!!GENETIC_CODE 1.0
transl_table = 4
   This file contains the Mold, Protozoan, and Coelenterate
Mitochondrial and the Mycoplasma/Spiroplasma Code translation
table, specified in the Feature Definition, Version 1.08, formatted
for use with GCG programs.  It names amino acids in both one and
three-letter form and lists the codons which should translate into
them. All GCG translation programs may generate their translations
from the unambiguous codons in this table.
   Codons which are all lower case are start codons.

Alternative Initiation Codons:

Trypanosoma: UUA, UUG, CUG
Leishmania: AUU, AUA
Tertrahymena: AUU, AUA, AUG
Paramecium: AUU, AUA, AUG, AUC, GUG, GUA(?)
(Pritchard et al., 1990)

Systematic Range:

Mycoplasmatales: Mycoplasma, Spiroplasma (Bove et al., 1989);

Fungi: Emericella nidulans, Neurospora crassa, Podospora anserina, Acremonium
(Fox, 1987), Candida parapsilosis (Guelin et al., 1991), Trichophyton rubrum
(de Bievre and Dujon, 1992), Dekkera/Brettanomyces, Eeniella (Hoeben et al.,
1993), and probably Ascobolus immersus, Aspergillus amstelodami, Claviceps
purpurea, and Cochliobolus heterostrophus.

Protozoa: Trypanosoma brucei, Leishmania tarentolae, Paramecium tetraurelia,
Tetrahymena pyriformis and probably Plasmodium gallinaceum (Aldritt et al.,
1989)].

Metazoa: Coelenterata (Ctenophora and Cnidaria)

Comments:

* This code is also used for the kinetoplast DNA (maxicircles,
minicircles). Kinetoplasts are modified mitochondria (or their parts).

* This code is not used in the Acholeplasmataceae and plant-pathogenic
mycoplasma-like organisms (MLO) (Lim and Sears, 1992)

   This code differs from the standard code in the following codons:

               Mitochondrion     Standard

                 W Trp TGA       * End TGA

	The Mold, Protozoan, and Coelenterate Mitochondrial
	and Mycoplasma/Spiroplasma Code
         
Symbol   3-letter    Codons                    ! IUPAC     ..

 A        Ala         GCT GCC GCA GCG           ! GCX
 B        Asx                                   ! RAY
 C        Cys         TGT TGC                   ! TGY
 D        Asp         GAT GAC                   ! GAY
 E        Glu         GAA GAG                   ! GAR
 F        Phe         TTT TTC                   ! TTY
 G        Gly         GGT GGC GGA GGG           ! GGX
 H        His         CAT CAC                   ! CAY
 I        Ile         att atc ata               ! ATH
 J        ???         ...                       ! ...
 K        Lys         AAA AAG                   ! AAR
 L        Leu         tta ttg CTT CTC CTA ctg   ! TTR CTX YTR   
 M        Met         atg                       ! ATG
 N        Asn         AAT AAC                   ! AAY
 O        ???         ...                       ! ...
 P        Pro         CCT CCC CCA CCG           ! CCX
 Q        Gln         CAA CAG                   ! CAR
 R        Arg         CGT CGC CGA CGG AGA AGG   ! CGX AGR MGR   
 S        Ser         TCT TCC TCA TCG AGT AGC   ! TCX AGY       
 T        Thr         ACT ACC ACA ACG           ! ACX
 U        ???         ...                       ! ...
 V        Val         GTT GTC GTA gtg           ! GTX
 W        Trp         TGG TGA                   ! TGR
 X        Xxx                                   ! XXX
 Y        Tyr         TAT TAC                   ! TAY
 Z        Glx                                   ! SAR
 .        ...         ...                       ! ...
 *        End         TAA TAG                   ! TAR