!!GENETIC_CODE 1.0 transl_table = 6 This file contains the table for Ciliate, Dasycladacean and Hexamita nuclear codes specified in the Feature Table Definition, Version 1.08, formatted for use with the GCG programs. It names amino acids in both one and three-letter form and lists the codons which should translate into them. All GCG translation programs can generate their translations from the unambiguous codons in this table. Codons which are all lower case are start codons. Systematic Range: Ciliata: Oxytricha and Stylonychia (Hoffman et al. 1995), Paramecium, Tetrahymena, Oxytrichidae and probably Glaucoma chattoni. Dasycladaceae: Acetabularia (Schneider et al., 1989) and Batophora (Schneider and de Groot, 1991). Comment: * The ciliate macronuclear code has not been determined completely. The codon UAA is known to code for Gln only in the Oxytrichidae. This code differs from the standard code in the following codons: Ciliate Standard Q Gln TAG * End TAG Q Gln TAA * End TAA The Ciliate, Dasycladacean and Hexamita Nuclear Code Symbol 3-letter Codons ! IUPAC .. A Ala GCT GCC GCA GCG ! GCX B Asx ! RAY C Cys TGT TGC ! TGY D Asp GAT GAC ! GAY E Glu GAA GAG ! GAR F Phe TTT TTC ! TTY G Gly GGT GGC GGA GGG ! GGX H His CAT CAC ! CAY I Ile ATT ATC ATA ! ATH J ??? ... ! ... K Lys AAA AAG ! AAR L Leu TTG TTA CTT CTC CTA CTG ! TTR CTX YTR M Met atg ! ATG N Asn AAT AAC ! AAY O ??? ... ! ... P Pro CCT CCC CCA CCG ! CCX Q Gln CAA CAG TAA TAG ! CAR TAR R Arg CGT CGC CGA CGG AGA AGG ! CGX AGR MGR S Ser TCT TCC TCA TCG AGT AGC ! TCX AGY T Thr ACT ACC ACA ACG ! ACX U ??? ... ! ... V Val GTT GTC GTA GTG ! GTX W Trp TGG ! TGG X Xxx ! XXX Y Tyr TAT TAC ! TAY Z Glx ! SAR . ... ... ! ... * End TGA ! TGA