!!GENETIC_CODE 1.0
transl_table = 11
   This file contains the Bacterial Code translation table, specified
in the Feature Definition, Version 1.08, formatted for use with GCG
programs.  It names amino acids in both one and three-letter form and
lists the codons which should translate into them. All GCG translation
programs may generate their translations from the unambiguous codons
in this table.
    Codons which are all lower case are start codons.

Alternative Initiation Codons:

GUG, UUG, AUU, CUG

Systematic Range:

Prokaryotes including the eubacteria (Kozak, 1983) and archaebacteria (Brown et
al. 1989; Noelling et al., unpublished).

Comments:

* UGA codes at low efficiency for Trp in Bacillus subtilis and,
presumably, in Escherichia coli (Hatfiled and Diamond, 1993).

* CUG is known to function as an initiator for one plasmid-encoded
protein (RepA) in Escherichia coli (Spiers and Bergquist, 1992) and
possibly in Methanobacterium thermoautotrophicum (Noelling et al.,
unpublished)

* There is no record of AUU initition codon for the archaebacteria.

		The Bacterial Code

Symbol   3-letter    Codons                    ! IUPAC     ..

 A        Ala         GCT GCC GCA GCG           ! GCX
 B        Asx                                   ! RAY 
 C        Cys         TGT TGC                   ! TGY
 D        Asp         GAT GAC                   ! GAY
 E        Glu         GAA GAG                   ! GAR
 F        Phe         TTT TTC                   ! TTY
 G        Gly         GGT GGC GGA GGG           ! GGX
 H        His         CAT CAC                   ! CAY
 I        Ile         att ATC ATA               ! ATH
 J        ???         ...                       ! ...
 K        Lys         AAA AAG                   ! AAR
 L        Leu         ttg TTA CTT CTC CTA ctg   ! TTR CTX YTR    
 M        Met         atg                       ! ATG
 N        Asn         AAT AAC                   ! AAY
 O        ???         ...                       ! ...
 P        Pro         CCT CCC CCA CCG           ! CCX
 Q        Gln         CAA CAG                   ! CAR
 R        Arg         CGT CGC CGA CGG AGA AGG   ! CGX AGR MGR    
 S        Ser         TCT TCC TCA TCG AGT AGC   ! TCX AGY        
 T        Thr         ACT ACC ACA ACG           ! ACX
 U        ???         ...                       ! ...
 V        Val         GTT GTC GTA gtg           ! GTX
 W        Trp         TGG                       ! TGG
 X        Xxx                                   ! XXX
 Y        Tyr         TAT TAC                   ! TAY
 Z        Glx                                   ! SAR
 .        ...         ...                       ! ...
 *        End         TAA TAG TGA               ! TAR TRA