!!GENETIC_CODE 1.0
transl_table = 12
  This file contains the standard translation table specified in the
feature table definition, Version 1.08, formatted for use with the GCG
programs (Data Files volume of the Data Reference Set). It names amino
acids in both one and three-letter form and lists the codons which
should translate into them.
   Codons which are all lower case are start codons.

Alternative Initiation Codons:

CAG may be used in Candida albicans (Santos et al., 1993).

Systematic Range:

Endomycetales (yeasts): Candida albicans, Candida cylindracea, Candida
melibiosica, Candida parapsilosis, and Candida rugosa (Ohama et al., 1993).

Comment:

* However, other yeast, including Saccharomyces cerevisiae, Candida
azyma, Candida diversa, Candida magnoliae, Candida rugopelliculosa,
Yarrowia lipolytica, and Zygoascus hellenicus, definitely use the
standard (nuclear) code (Ohama et al., 1993).


		Differences from the Standard Code:

		           Code 12      Standard

		 CUG       Ser          Leu

	The Alternative Yeast Nuclear Code

Symbol   3-letter    Codons                    ! IUPAC     ..

 A        Ala         GCT GCC GCA GCG           ! GCX
 B        Asx                                   ! RAY 
 C        Cys         TGT TGC                   ! TGY
 D        Asp         GAT GAC                   ! GAY
 E        Glu         GAA GAG                   ! GAR
 F        Phe         TTT TTC                   ! TTY
 G        Gly         GGT GGC GGA GGG           ! GGX
 H        His         CAT CAC                   ! CAY
 I        Ile         ATT ATC ATA               ! ATH
 J        ???         ...                       ! ...
 K        Lys         AAA AAG                   ! AAR
 L        Leu         TTG TTA CTT CTC CTA       ! TTR CTH    
 M        Met         atg                       ! ATG
 N        Asn         AAT AAC                   ! AAY
 O        ???         ...                       ! ...
 P        Pro         CCT CCC CCA CCG           ! CCX
 Q        Gln         CAA CAG                   ! CAR
 R        Arg         CGT CGC CGA CGG AGA AGG   ! CGX AGR MGR
 S        Ser         TCT TCC TCA TCG AGT AGC ctg   ! TCX AGY CTG
 T        Thr         ACT ACC ACA ACG           ! ACX
 U        ???         ...                       ! ...
 V        Val         GTT GTC GTA GTG           ! GTX
 W        Trp         TGG                       ! TGG
 X        Xxx                                   ! XXX
 Y        Tyr         TAT TAC                   ! TAY
 Z        Glx                                   ! SAR
 .        ...         ...                       ! ...
 *        End         TAA TAG TGA               ! TAR TRA