LOCUS       NC_003197               5365 bp    DNA     linear   BCT 30-APR-2009
DEFINITION  Salmonella typhimurium LT2, complete genome.
ACCESSION   NC_003197 REGION: 4196059..4201423
VERSION     NC_003197.1  GI:16763390
DBLINK      Project:241
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
            Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica
            serovar Typhimurium.
REFERENCE   1  (bases 1 to 5365)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (bases 1 to 5365)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-SEP-2004) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 5365)
  CONSRTM   NCBI Microbial Genomes Annotation Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2001) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AE006468.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5365
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /mol_type="genomic DNA"
                     /strain="LT2; SGSC 1412; ATCC 700720"
                     /db_xref="ATCC:700720"
                     /db_xref="taxon:99287"
                     /focus
     misc_feature    <1..>5365
                     /note="REFSEQ gene predictions performed by GeneMark
                     2.4/GeneMark.hmm 2.0 with comparison to original submitter
                     provided annotation; tRNA sequences predicted using
                     tRNAscan-SE 1.21."
     gene            1..1542
                     /gene="rrsA"
                     /locus_tag="STM3988"
                     /db_xref="GeneID:1255514"
     rRNA            1..1542
                     /gene="rrsA"
                     /locus_tag="STM3988"
                     /product="16S ribosomal RNA"
                     /db_xref="GeneID:1255514"
     gene            1612..1688
                     /gene="ileT"
                     /locus_tag="STM3989"
                     /db_xref="GeneID:1255515"
     tRNA            1612..1688
                     /gene="ileT"
                     /locus_tag="STM3989"
                     /product="tRNA-Ile"
                     /db_xref="GeneID:1255515"
     gene            1800..1875
                     /gene="alaT"
                     /locus_tag="STM3990"
                     /db_xref="GeneID:1255516"
     tRNA            1800..1875
                     /gene="alaT"
                     /locus_tag="STM3990"
                     /product="tRNA-Ala"
                     /db_xref="GeneID:1255516"
     gene            2058..5052
                     /gene="rrlA"
                     /locus_tag="STM3991"
                     /db_xref="GeneID:1255517"
     rRNA            2058..5052
                     /gene="rrlA"
                     /locus_tag="STM3991"
                     /product="23S ribosomal RNA"
                     /db_xref="GeneID:1255517"
     gene            5244..5365
                     /gene="rrfA"
                     /locus_tag="STM3992"
                     /db_xref="GeneID:1255518"
     rRNA            5244..5365
                     /gene="rrfA"
                     /locus_tag="STM3992"
                     /product="5S ribosomal RNA"
                     /db_xref="GeneID:1255518"
ORIGIN      
        1 aaattgaaga gtttgatcat ggctcagatt gaacgctggc ggcaggccta acacatgcaa
       61 gtcgaacggt aacaggaagc agcttgctgc ttcgctgacg agtggcggac gggtgagtaa
      121 tgtctgggaa actgcctgat ggagggggat aactactgga aacggtggct aataccgcat
      181 aacgtcgcaa gaccaaagag ggggaccttc gggcctcttg ccatcagatg tgcccagatg
      241 ggattagctt gttggtgagg taacggctca ccaaggcgac gatccctagc tggtctgaga
      301 ggatgaccag ccacactgga actgagacac ggtccagact cctacgggag gcagcagtgg
      361 ggaatattgc acaatgggcg caagcctgat gcagccatgc cgcgtgtatg aagaaggcct
      421 tcgggttgta aagtactttc agcggggagg aaggtgttgt ggttaataac cgcagcaatt
      481 gacgttaccc gcagaagaag caccggctaa ctccgtgcca gcagccgcgg taatacggag
      541 ggtgcaagcg ttaatcggaa ttactgggcg taaagcgcac gcaggcggtc tgtcaagtcg
      601 gatgtgaaat ccccgggctc aacctgggaa ctgcattcga aactggcagg cttgagtctt
      661 gtagaggggg gtagaattcc aggtgtagcg gtgaaatgcg tagagatctg gaggaatacc
      721 ggtggcgaag gcggccccct ggacaaagac tgacgctcag gtgcgaaagc gtggggagca
      781 aacaggatta gataccctgg tagtccacgc cgtaaacgat gtctacttgg aggttgtgcc
      841 cttgaggcgt ggcttccgga gctaacgcgt taagtagacc gcctggggag tacggccgca
      901 aggttaaaac tcaaatgaat tgacgggggc ccgcacaagc ggtggagcat gtggtttaat
      961 tcgatgcaac gcgaagaacc ttacctggtc ttgacatcca cagaagaatc cagagatgga
     1021 tttgtgcctt cgggaactgt gagacaggtg ctgcatggct gtcgtcagct cgtgttgtga
     1081 aatgttgggt taagtcccgc aacgagcgca acccttatcc tttgttgcca gcgattaggt
     1141 cgggaactca aaggagactg ccagtgataa actggaggaa ggtggggatg acgtcaagtc
     1201 atcatggccc ttacgaccag ggctacacac gtgctacaat ggcgcataca aagagaagcg
     1261 acctcgcgag agcaagcgga cctcataaag tgcgtcgtag tccggattgg agtctgcaac
     1321 tcgactccat gaagtcggaa tcgctagtaa tcgtggatca gaatgccacg gtgaatacgt
     1381 tcccgggcct tgtacacacc gcccgtcaca ccatgggagt gggttgcaaa agaagtaggt
     1441 agcttaacct tcgggagggc gcttaccact ttgtgattca tgactggggt gaagtcgtaa
     1501 caaggtaacc gtaggggaac ctgcggttgg atcacctcct taccttaaag aaacggtctt
     1561 tgaagtgctc acacagattg tctgatgaaa aacgagcagt aaaacctcta caggcttgta
     1621 gctcaggtgg ttagagcgca cccctgataa gggtgaggtc ggtggttcaa gtccactcag
     1681 gcctaccaaa ttttccctga atactgcgtt gtgaaataac tcacatactg atgtatgctt
     1741 cgttattcca cgccttgtct caggaaaaat tatcggtaaa gaggttctga ctacacgatg
     1801 gggctatagc tcagctggga gagcgcctgc tttgcacgca ggaggtctgc ggttcgatcc
     1861 cgcatagctc caccatctcg tgagtgttta cgaaaaaata cttcagagtg tacctgaaag
     1921 ggttcactgc gaagttttgc tctttaaaaa tctggatcaa gctgaaaatt gaaacacaga
     1981 acaacgaaag ttgttcgtga gtctctcaaa ttttcgcaac acgatgatga atcgtaagaa
     2041 acatcttcgg gttgtgaggt taagcgacta agcgtacacg gtggatgccc tggcagtcag
     2101 aggcgatgaa ggacgtgcta atctgcgata agcgccggta aggtgatatg aaccgttata
     2161 accggcgatt tccgaatggg gaaacccagt gtgattcgtc acactatcat taactgaatc
     2221 cataggttaa tgaggcgaac cgggggaact gaaacatcta agtaccccga ggaaaagaaa
     2281 tcaaccgaga ttcccccagt agcggcgagc gaacggggag gagcccagag cctgaatcag
     2341 catgtgtgtt agtggaagcg tctggaaagg cgcgcgatac agggtgacag ccccgtacac
     2401 aaaagcgcat gtgctgtgag ctcgatgagt agggcgggac acgtggtatc ctgtctgaat
     2461 atggggggac catcctccaa ggctaaatac tcctgactga ccgatagtga accagtaccg
     2521 tgagggaaag gcgaaaagaa ccccggcgag gggagtgaaa aagaacctga aaccgtgtac
     2581 gtacaagcag tgggagcaca ggtttacctg tgtgactgcg taccttttgt ataatgggtc
     2641 agcgacttat attctgtagc aaggttaacc gtatagggga gccggaggga aaccgagtct
     2701 taattgggcg ttaagttgca gggtatagac ccgaaacccg gtgatctagc catgggcagg
     2761 ttgaaggttg ggtaacacta actggaggac cgaaccgact aatgttgaaa aattagcgga
     2821 tgacctgtgg ctgggggtga aaggccaatc aaaccgggag atagctggtt ctccccgaaa
     2881 gctatttagg tagcgcctcg tgaattcatc tccgggggta gagcactgtt tcggctaggg
     2941 ggccatcccg gcttaccaac ccgatgcaaa ctgcgaatac cggagaatgt tatcacggga
     3001 gacacacggc gggtgctaac gtccgtcgtg aagagggaaa caacccagac cgccagctaa
     3061 ggtcccaaag tcatggttaa gtgggaaacg atgtgggaag gcccagacag ccaggatgtt
     3121 ggcttagaag cagccatcat ttaaagaaag cgtaatagct cactggtcga gtcggcctgc
     3181 gcggaagatg taacggggct aaaccatgca ccgaagctgc ggcagcgaac gtatcaccca
     3241 agacaacttt acggagttga cgattgacgg agcgaagcga cgtcaaagcg ttcattaaag
     3301 tcgagttggc ttagggatac gttcgttggg taggggagcg ttctgtaagc ctgtgaaggt
     3361 gtgtcgtgag gcatgctgga ggtatcagaa gtgcgaatgc tgacataagt aacgataaag
     3421 cgggtgaaaa gcccgctcgc cggaagacca agggttcctg tccaacgtta atcggggcag
     3481 ggtgagtcga cccctaaggc gaggccgaaa ggcgtagtcg atgggaaacg ggttaatatt
     3541 cccgtacttg gtgttactgc gaagggggga cggagaaggc tatgttggcc gggcgacggt
     3601 tgtcccggtt taagcgtgta ggtgtgtgtt ccaggtaaat ccggttcact ttaacactga
     3661 ggcgtgacga cgaggcacta cggtgctgaa gcaacaaatg ccctgcttcc aggaaaagcc
     3721 tctaagcatc aggtaacacg aaatcgtacc ccaaaccgac acaggtggtc aggtagagaa
     3781 taccaaggcg cttgagagaa ctcgggtgaa ggaactaggc aaaatggtgc cgtaacttcg
     3841 ggagaaggca cgctgacacg taggtgaagt gatttactca tggagctgaa gtcagtcgaa
     3901 gataccagct ggctgcaact gtttattaaa aacacagcac tgtgcaaaca cgaaagtgga
     3961 cgtatacggt gtgacgcctg cccggtgccg gaaggttaat tgatggggtc agcgtaagcg
     4021 aagctcctga tcgaagcccc ggtaaacggc ggccgtaact ataacggtcc taaggtagcg
     4081 aaattccttg tcgggtaagt tccgacctgc acgaatggcg taatgatggc caggctgtct
     4141 ccacccgaga ctcagtgaaa ttgaactcgc tgtgaagatg cagtgtaccc gcggcaagac
     4201 ggaaagaccc cgtgaacctt tactatagct tgacactgaa cattgagcct tgatgtgtag
     4261 gataggtggg aggctttgaa gtgtggacgc cagtctgcat ggagccgacc ttgaaatacc
     4321 accctttaat gtttgatgtt ctaacgtgga cccgtaatcc gggttgcgga cagtgtctgg
     4381 tgggtagttt gactggggcg gtctcctcct aaagagtaac ggaggagcac gaaggttggc
     4441 taatcctggt cggacatcag gaggttagtg caatggcata agccagcttg actgcgagcg
     4501 tgacggcgcg agcaggtgcg aaagcaggtc atagtgatcc ggtggttctg aatggaaggg
     4561 ccatcgctca acggataaaa ggtactccgg ggataacagg ctgataccgc ccaagagttc
     4621 atatcgacgg cggtgtttgg cacctcgatg tcggctcatc acatcctggg gctgaagtag
     4681 gtcccaaggg tatggctgtt cgccatttaa agtggtacgc gagctgggtt tagaacgtcg
     4741 tgagacagtt cggtccctat ctgccgtggg cgctggagaa ctgagggggg ctgctcctag
     4801 tacgagagga ccggagtgga cgcatcactg gtgttcgggt tgtcatgcca atggcactgc
     4861 ccggtagcta aatgcggaag agataagtgc tgaaagcatc taagcacgaa acttgccccg
     4921 agatgagttc tccctgagac ttagagtctc ctgaaggaac gttgaagacg acgacgttga
     4981 taggccgggt gtgtaagcgc agcgatgcgt tgagctaacc ggtactaatg aaccgtgagg
     5041 cttaacctta caacgccgaa gatgttttgg cggattgaga agacaacaat tttcagctca
     5101 gattcagagt ccgaaggatt ttacgctgag acaaggcggc aaacgcagcg acggaaggag
     5161 catacagaag tatgtgactg acgctcgcaa gagcagccaa cgccgtatca gtgtaaaaga
     5221 cacaggacgg agcacaaaga atttgcctgg cggcactagc gcggtggtcc cacctgaccc
     5281 catgccgaac tcagaagtga aacgccgtag cgccgatggt agtgtggggt ctccccatgc
     5341 gagagtaggg aactgccagg catca
//

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Eric Kofoid eckofoid at ucdavis.edu