LOCUS       NC_003197               5312 bp    DNA     linear   BCT 30-APR-2009
DEFINITION  Salmonella typhimurium LT2, complete genome.
ACCESSION   NC_003197 REGION: 4100132..4105443
VERSION     NC_003197.1  GI:16763390
DBLINK      Project:241
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
            Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica
            serovar Typhimurium.
REFERENCE   1  (bases 1 to 5312)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (bases 1 to 5312)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-SEP-2004) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 5312)
  CONSRTM   NCBI Microbial Genomes Annotation Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2001) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AE006468.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5312
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /mol_type="genomic DNA"
                     /strain="LT2; SGSC 1412; ATCC 700720"
                     /db_xref="ATCC:700720"
                     /db_xref="taxon:99287"
                     /focus
     misc_feature    <1..>5312
                     /note="REFSEQ gene predictions performed by GeneMark
                     2.4/GeneMark.hmm 2.0 with comparison to original submitter
                     provided annotation; tRNA sequences predicted using
                     tRNAscan-SE 1.21."
     gene            1..1544
                     /gene="rrsC"
                     /locus_tag="STM3889"
                     /db_xref="GeneID:1255416"
     rRNA            1..1544
                     /gene="rrsC"
                     /locus_tag="STM3889"
                     /product="16S ribosomal RNA"
                     /db_xref="GeneID:1255416"
     gene            1628..1703
                     /gene="gltU"
                     /locus_tag="STM3890"
                     /db_xref="GeneID:1255417"
     tRNA            1628..1703
                     /gene="gltU"
                     /locus_tag="STM3890"
                     /product="tRNA-Glu"
                     /db_xref="GeneID:1255417"
     gene            1897..4890
                     /gene="rrlC"
                     /locus_tag="STM3891"
                     /db_xref="GeneID:1255418"
     rRNA            1897..4890
                     /gene="rrlC"
                     /locus_tag="STM3891"
                     /product="23S ribosomal RNA"
                     /db_xref="GeneID:1255418"
     gene            4897..4995
                     /gene="9S"
                     /locus_tag="STM3893"
                     /db_xref="GeneID:1255419"
     misc_RNA        4897..4995
                     /gene="9S"
                     /locus_tag="STM3893"
                     /product="regulatory RNA"
                     /db_xref="GeneID:1255419"
     gene            4980..5099
                     /gene="rrfC"
                     /locus_tag="STM3894"
                     /db_xref="GeneID:1255420"
     rRNA            4980..5099
                     /gene="rrfC"
                     /locus_tag="STM3894"
                     /product="5S ribosomal RNA"
                     /db_xref="GeneID:1255420"
     gene            5152..5228
                     /gene="aspT"
                     /locus_tag="STM3895"
                     /db_xref="GeneID:1255421"
     tRNA            5152..5228
                     /gene="aspT"
                     /locus_tag="STM3895"
                     /product="tRNA-Asp"
                     /db_xref="GeneID:1255421"
     gene            5237..5312
                     /gene="trpT"
                     /locus_tag="STM3896"
                     /db_xref="GeneID:1255422"
     tRNA            5237..5312
                     /gene="trpT"
                     /locus_tag="STM3896"
                     /product="tRNA-Trp"
                     /db_xref="GeneID:1255422"
ORIGIN      
        1 aaattgaaga gtttgatcat ggctcagatt gaacgctggc ggcaggccta acacatgcaa
       61 gtcgaacggt aacaggaagc agcttgctgc ttcgctgacg agtggcggac gggtgagtaa
      121 tgtctgggaa actgcctgat ggagggggat aactactgga aacggtggct aataccgcat
      181 aacgtcgcaa gaccaaagag ggggaccttc gggcctcttg ccatcagatg tgcccagatg
      241 ggattagctt gttggtgagg taacggctca ccaaggcgac gatccctagc tggtctgaga
      301 ggatgaccag ccacactgga actgagacac ggtccagact cctacgggag gcagcagtgg
      361 ggaatattgc acaatgggcg caagcctgat gcagccatgc cgcgtgtatg aagaaggcct
      421 tcgggttgta aagtactttc agcggggagg aaggtgttgt ggttaataac cgcagcaatt
      481 gacgttaccc gcagaagaag caccggctaa ctccgtgcca gcagccgcgg taatacggag
      541 ggtgcaagcg ttaatcggaa ttactgggcg taaagcgcac gcaggcggtc tgtcaagtcg
      601 gatgtgaaat ccccgggctc aacctgggaa ctgcattcga aactggcagg cttgagtctt
      661 gtagaggggg gtagaattcc aggtgtagcg gtgaaatgcg tagagatctg gaggaatacc
      721 ggtggcgaag gcggccccct ggacaaagac tgacgctcag gtgcgaaagc gtggggagca
      781 aacaggatta gataccctgg tagtccacgc cgtaaacgat gtctacttgg aggttgtgcc
      841 cttgaggcgt ggcttccgga gctaacgcgt taagtagacc gcctggggag tacggccgca
      901 aggttaaaac tcaaatgaat tgacgggggc ccgcacaagc ggtggagcat gtggtttaat
      961 tcgatgcaac gcgaagaacc ttacctggtc ttgacatcca cagaagaatc cagagatgga
     1021 tttgtgcctt cgggaactgt gagacaggtg ctgcatggct gtcgtcagct cgtgttgtga
     1081 aatgttgggt taagtcccgc aacgagcgca acccttatcc tttgttgcca gcgattaggt
     1141 cgggaactca aaggagactg ccagtgataa actggaggaa ggtggggatg acgtcaagtc
     1201 atcatggccc ttacgaccag ggctacacac gtgctacaat ggcgcataca aagagaagcg
     1261 acctcgcgag agcaagcgga cctcataaag tgcgtcgtag tccggattgg agtctgcaac
     1321 tcgactccat gaagtcggaa tcgctagtaa tcgtggatca gaatgccacg gtgaatacgt
     1381 tcccgggcct tgtacacacc gcccgtcaca ccatgggagt gggttgcaaa agaagtaggt
     1441 agcttaacct tcgggagggc gcttaccact ttgtgattca tgactggggt gaagtcgtaa
     1501 caaggtaacc gtaggggaac ctgcggttgg atcacctcct taccttaaag aactgttctt
     1561 tgcagtgctc acacagattg tctgatgaaa agtaaatagc aaggcgtctt gcgaagcaga
     1621 ctgatacgtc cccttcgtct agaggcccag gacaccgccc tttcacggcg gtaacagggg
     1681 ttcgaatccc ctaggggacg ccacttgctg gtttgtgagt gaaagtcacc tgccttaata
     1741 tctcaaaact gacttacgag tcacgtttga gatatttgct ctttaaaaat ctggatcaag
     1801 ctgaaaattg aaacacagaa caacgaaagt tgttcgtgag tctctcaaat tttcgcaaca
     1861 cgacgatgaa tcgaaagaaa catcttcggg ttgtgaggtt aagcgactaa gcgtacacgg
     1921 tggatgccct ggcagtcaga ggcgatgaag ggcgtgctaa tctgcgataa gcgccggtaa
     1981 ggtgatatga accgttataa ccggcgatac ccgaatgggg aaacccagtg tgattcgtca
     2041 cactatcatt aactgaatcc ataggttaat gaggcgaacc gggggaactg aaacatctaa
     2101 gtaccccgag gaaaagaaat caaccgagat tcccccagta gcggcgagcg aacggggagg
     2161 agcccagagc ctgaatcagc atgtgtgtta gtggaagcgt ctggaaaggt gcgcgataca
     2221 gggtgacagc cccgtacaca aaagcgcatg tgctgtgagc tcgatgagta gggcgggaca
     2281 cgtggtatcc tgtctgaata tggggggacc atcctccaag gctaaatact cctgactgac
     2341 cgatagtgaa ccagtaccgt gagggaaagg cgaaaagaac cccggcgagg ggagtgaaaa
     2401 agaacctgaa accgtgtacg tacaagcagt gggagcacag gtttacctgt gtgactgcgt
     2461 accttttgta taatgggtca gcgacttata ttctgtagca aggttaaccg tataggggag
     2521 ccggagggaa accgagtctt aaccgggcgt taagttgcag ggtatagacc cgaaacccgg
     2581 tgatctagcc atgggcaggt tgaaggttgg gtaacactaa ctggaggacc gaaccgacta
     2641 atgttgaaaa attagcggat gacctgtggc tgggggtgaa aggccaatca aaccgggaga
     2701 tagctggttc tccccgaaag ctatttaggt agcgcctcgt gaattcatct ccgggggtag
     2761 agcactgttt cggctagggg gccatcccgg cttaccaacc cgatgcaaac tgcgaatacc
     2821 ggagaatgtt atcacgggag acacacggcg ggtgctaacg tccgtcgtga agagggaaac
     2881 aacccagacc gccagctaag gtcccaaagt catggttaag tgggaaacga tgtgggaagg
     2941 cccagacagc caggatgttg gcttagaagc agccatcatt taaagaaagc gtaatagctc
     3001 actggtcgag tcggcctgcg cggaagatgt aacggggcta aaccatgcac cgaagctgcg
     3061 gcagcgaacg tatcacccaa gacaacttta cggagttgac gattgacgga gcgaagcgac
     3121 gtcaaagcgt tcattaaagt cgagttggct tagggatacg ttcgttgggt aggggagcgt
     3181 tctgtaagcc tgtgaaggtg tgtcgtgagg catgctggag gtatcagaag tgcgaatgct
     3241 gacataagta acgataaagc gggtgaaaag cccgctcgcc ggaagaccaa gggttcctgt
     3301 ccaacgttaa tcggggcagg gtgagtcgac ccctaaggcg aggccgaaag gcgtagtcga
     3361 tgggaaacgg gttaatattc ccgtacttgg tgttactgcg aaggggggac ggagaaggct
     3421 atgttggccg ggcgacggtt gtcccggttt aagcgtgtag gtgtgtgttc caggtaaatc
     3481 cggttcactt taacactgag gcgtgacgac gaggcactac ggtgctgaag caacaaatgc
     3541 cctgcttcca ggaaaagcct ctaagcatca ggtaacacga aatcgtaccc caaaccgaca
     3601 caggtggtca ggtagagaat accaaggcgc ttgagagaac tcgggtgaag gaactaggca
     3661 aaatggtgcc gtaacttcgg gagaaggcac gctgacacgt aggtgaagtg atttactcat
     3721 ggagctgaag tcagtcgaag ataccagctg gctgcaactg tttattaaaa acacagcact
     3781 gtgcaaacac gaaagtggac gtatacggtg tgacgcctgc ccggtgccgg aaggttaatt
     3841 gatggggtca gcgtaagcga agctcctgat cgaagccccg gtaaacggcg gccgtaacta
     3901 taacggtcct aaggtagcga aattccttgt cgggtaagtt ccgacctgca cgaatggcgt
     3961 aatgatggcc aggctgtctc cacccgagac tcagtgaaat tgaactcgct gtgaagatgc
     4021 agtgtacccg cggcaagacg gaaagacccc gtgaaccttt actatagctt gacactgaac
     4081 attgagcctt gatgtgtagg ataggtggga ggctttgaag tgtggacgcc agtctgcatg
     4141 gagccgacct tgaaatacca ccctttaatg tttgatgttc taacgtggac ccgtaatccg
     4201 ggttgcggac agtgtctggt gggtagtttg actggggcgg tctcctccta aagagtaacg
     4261 gaggagcacg aaggttggct aatcctggtc ggacatcagg aggttagtgc aatggcataa
     4321 gccagcttga ctgcgagcgt gacggcgcga gcaggtgcga aagcaggtca tagtgatccg
     4381 gtggttctga atggaagggc catcgctcaa cggataaaag gtactccggg gataacaggc
     4441 tgataccgcc caagagttca tatcgacggc ggtgtttggc acctcgatgt cggctcatca
     4501 catcctgggg ctgaagtagg tcccaagggt atggctgttc gccatttaaa gtggtacgcg
     4561 agctgggttt agaacgtcgt gagacagttc ggtccctatc tgccgtgggc gctggagaac
     4621 tgaggggggc tgctcctagt acgagaggac cggagtggac gcatcactgg tgttcgggtt
     4681 gtcatgccaa tggcactgcc cggtagctaa atgcggaaga gataagtgct gaaagcatct
     4741 aagcacgaaa cttgccccga gatgagttct ccctgagact tagagtctcc tgaaggaacg
     4801 ttgaagacga cgacgttgat aggccgggtg tgtaagcgca gcgatgcgtt gagctaaccg
     4861 gtactaatga accgtgaggc ttaaccttac aacgccgaag atgttttggc ggttaagaga
     4921 agattttcag cactgattca gattacatca gaacgtaaaa acggtctgat aacagaattt
     4981 gcctggcggc actagcgcgg tggtcccacc tgaccccatg ccgaactcag aagtgaaacg
     5041 ccgtagcgcc gatggtagtg tggggtctcc ccatgcgaga gtagggaact gccaggcatc
     5101 aaattaagca gtaaactgat gtaaaaatca gtggttgtaa aagaattcgg tggagcggta
     5161 gttcagttgg ttagaatacc tgcctgtcac gcagggggtc gcgggttcga gtcccgtccg
     5221 ttccgccacc ctaattaggg gcgtagttca attggtagag caccggtctc caaaaccggg
     5281 tgttgggagt tcgagtctct ccgcccctgc ca
//

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Eric Kofoid eckofoid at ucdavis.edu