LOCUS       NC_003197               5385 bp    DNA     linear   BCT 30-APR-2009
DEFINITION  Salmonella typhimurium LT2, complete genome.
ACCESSION   NC_003197 REGION: complement(3566622..3572006)
VERSION     NC_003197.1  GI:16763390
DBLINK      Project:241
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
            Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica
            serovar Typhimurium.
REFERENCE   1  (bases 1 to 5385)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (bases 1 to 5385)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-SEP-2004) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 5385)
  CONSRTM   NCBI Microbial Genomes Annotation Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2001) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AE006468.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5385
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /mol_type="genomic DNA"
                     /strain="LT2; SGSC 1412; ATCC 700720"
                     /db_xref="ATCC:700720"
                     /db_xref="taxon:99287"
                     /focus
     misc_feature    complement(<1..>5385)
                     /note="REFSEQ gene predictions performed by GeneMark
                     2.4/GeneMark.hmm 2.0 with comparison to original submitter
                     provided annotation; tRNA sequences predicted using
                     tRNAscan-SE 1.21."
     gene            1..1544
                     /gene="rrsD"
                     /locus_tag="STM3398"
                     /db_xref="GeneID:1254921"
     rRNA            1..1544
                     /gene="rrsD"
                     /locus_tag="STM3398"
                     /product="16S ribosomal RNA"
                     /db_xref="GeneID:1254921"
     gene            1627..1702
                     /locus_tag="STM3397"
                     /db_xref="GeneID:1254920"
     tRNA            1627..1702
                     /locus_tag="STM3397"
                     /product="tRNA-Glu"
                     /db_xref="GeneID:1254920"
     gene            1936..4929
                     /gene="rrlD"
                     /locus_tag="STM3396"
                     /db_xref="GeneID:1254919"
     rRNA            1936..4929
                     /gene="rrlD"
                     /locus_tag="STM3396"
                     /product="23S ribosomal RNA"
                     /db_xref="GeneID:1254919"
     gene            5019..5140
                     /gene="rrfD"
                     /locus_tag="STM3395"
                     /db_xref="GeneID:1254918"
     rRNA            5019..5140
                     /gene="rrfD"
                     /locus_tag="STM3395"
                     /product="5S ribosomal RNA"
                     /db_xref="GeneID:1254918"
     gene            5150..5225
                     /gene="thrV"
                     /locus_tag="STM3394"
                     /db_xref="GeneID:1254917"
     tRNA            5150..5225
                     /gene="thrV"
                     /locus_tag="STM3394"
                     /product="tRNA-Thr"
                     /db_xref="GeneID:1254917"
     gene            5264..5385
                     /gene="rrfF"
                     /locus_tag="STM3393"
                     /db_xref="GeneID:1254916"
     rRNA            5264..5385
                     /gene="rrfF"
                     /locus_tag="STM3393"
                     /product="5S ribosomal RNA"
                     /db_xref="GeneID:1254916"
ORIGIN      
        1 aattgaagag tttgatcatg gctcagattg aacgctggcg gcaggcctaa cacatgcaag
       61 tcgaacggta acaggaagca gcttgctgct tcgctgacga gtggcggacg ggtgagtaat
      121 gtctgggaaa ctgcctgatg gagggggata actactggaa acggtggcta ataccgcata
      181 acgtcgcaag accaaagagg gggaccttcg ggcctcttgc catcagatgt gcccagatgg
      241 gattagcttg ttggtgaggt aacggctcac caaggcgacg atccctagct ggtctgagag
      301 gatgaccagc cacactggaa ctgagacacg gtccagactc ctacgggagg cagcagtggg
      361 gaatattgca caatgggcgc aagcctgatg cagccatgcc gcgtgtatga agaaggcctt
      421 cgggttgtaa agtactttca gcggggagga aggtgttgtg gttaataacc gcagcaattg
      481 acgttacccg cagaagaagc accggctaac tccgtgccag cagccgcggt aatacggagg
      541 gtgcaagcgt taatcggaat tactgggcgt aaagcgcacg caggcggtct gtcaagtcgg
      601 atgtgaaatc cccgggctca acctgggaac tgcattcgaa actggcaggc ttgagtcttg
      661 tagagggggg tagaattcca ggtgtagcgg tgaaatgcgt agagatctgg aggaataccg
      721 gtggcgaagg cggccccctg gacaaagact gacgctcagg tgcgaaagcg tggggagcaa
      781 acaggattag ataccctggt agtccacgcc gtaaacgatg tctacttgga ggttgtgccc
      841 ttgaggcgtg gcttccggag ctaacgcgtt aagtagaccg cctggggagt acggccgcaa
      901 ggttaaaact caaatgaatt gacgggggcc cgcacaagcg gtggagcatg tggtttaatt
      961 cgatgcaacg cgaagaacct tacctggtct tgacatccac agaactttcc agagatggat
     1021 tggtgccttc gggaactgtg agacaggtgc tgcatggctg tcgtcagctc gtgttgtgaa
     1081 atgttgggtt aagtcccgca acgagcgcaa cccttatcct ttgttgccag cgattaggtc
     1141 gggaactcaa aggagactgc cagtgataaa ctggaggaag gtggggatga cgtcaagtca
     1201 tcatggccct tacgaccagg gctacacacg tgctacaatg gcgcatacaa agagaagcga
     1261 cctcgcgaga gcaagcggac ctcataaagt gcgtcgtagt ccggattgga gtctgcaact
     1321 cgactccatg aagtcggaat cgctagtaat cgtggatcag aatgccacgg tgaatacgtt
     1381 cccgggcctt gtacacaccg cccgtcacac catgggagtg ggttgcaaaa gaagtaggta
     1441 gcttaacctt cgggagggcg cttaccactt tgtgattcat gactggggtg aagtcgtaac
     1501 aaggtaaccg taggggaacc tgcggttgga tcacctcctt accttaaaga agcgtacttt
     1561 gaagtgctca cacagattgt ctgatgaaaa gtgaatagca aggcgtcttg cgattgagac
     1621 ttcagtgtcc ccttcgtcta gaggcccagg acaccgccct ttcacggcgg taacaggggt
     1681 tcgaatcccc taggggacgc cagcgttcaa actgatgagg tcaaacctcc aggggacgcc
     1741 acttgctggt ttgtgagtga aagtcacctg ccttaatatc tcaaaactga cttacgagtc
     1801 acgtttgaga tatttgctct ttaaaaatct ggatcaagct gaaaattgaa acacagaaca
     1861 acgaaagttg ttcgtgagtc tctcaaattt tcgcaacacg atgatgaatc gtaagaaaca
     1921 tcttcgggtt gtgaggttaa gcgactaagc gtacacggtg gatgccctgg cagtcagagg
     1981 cgatgaaggg cgtgctaatc tgcgataagc gccggtaagg tgatatgaac cgttataacc
     2041 ggcgataccc gaatggggaa acccagtgtg attcgtcaca ctatcattaa ctgaatccat
     2101 aggttaatga ggcgaaccgg gggaactgaa acatctaagt accccgagga aaagaaatca
     2161 accgagattc ccccagtagc ggcgagcgaa cggggaggag cccagagcct gaatcagcat
     2221 gtgtgttagt ggaagcgtct ggaaaggtgc gcgatacagg gtgacagccc cgtacacaaa
     2281 agcgcatgtg ctgtgagctc gatgagtagg gcgggacacg tggtatcctg tctgaatatg
     2341 gggggaccat cctccaaggc taaatactcc tgactgaccg atagtgaacc agtaccgtga
     2401 gggaaaggcg aaaagaaccc cggcgagggg agtgaaaaag aacctgaaac cgtgtacgta
     2461 caagcagtgg gagcacaggt ttacctgtgt gactgcgtac cttttgtata atgggtcagc
     2521 gacttatatt ctgtagcaag gttaaccgta taggggagcc gtagggaaac cgagtcttaa
     2581 ccgggcgtta agttgcaggg tatagacccg aaacccggtg atctagccat gggcaggttg
     2641 aaggttgggt aacactaact ggaggaccga accgactaat gttgaaaaat tagcggatga
     2701 cctgtggctg ggggtgaaag gccaatcaaa ccgggagata gctggttctc cccgaaagct
     2761 atttaggtag cgcctcgtga attcatctcc gggggtagag cactgtttcg gctagggggc
     2821 catcccggct taccaacccg atgcaaactg cgaataccgg agaatgttat cacgggagac
     2881 acacggcggg tgctaacgtc cgtcgtgaag agggaaacaa cccagaccgc cagctaaggt
     2941 cccaaagtca tggttaagtg ggaaacgatg tgggaaggcc cagacagcca ggatgttggc
     3001 ttagaagcag ccatcattta aagaaagcgt aatagctcac tggtcgagtc ggcctgcgcg
     3061 gaagatgtaa cggggctaaa ccatgcaccg aagctgcggc agcgaacgta tcacccaaga
     3121 caactttacg gagttgacga ttgacggagc gaagcgacgt caaagcgttc attaaagtcg
     3181 agttggctta gggatacgtt cgttgggtag gggagcgttc tgtaagcctg tgaaggtgtg
     3241 tcgtgaggca tgctggaggt atcagaagtg cgaatgctga cataagtaac gataaagcgg
     3301 gtgaaaagcc cgctcgccgg aagaccaagg gttcctgtcc aacgttaatc ggggcagggt
     3361 gagtcgaccc ctaaggcgag gccgaaaggc gtagtcgatg ggaaacgggt taatattccc
     3421 gtacttggtg ttactgcgaa ggggggacgg agaaggctat gttggccggg cgacggttgt
     3481 cccggtttaa gcgtgtaggt gtgtgttcca ggtaaatccg gttcacttta acactgaggc
     3541 gtgacgacga ggcactacgg tgctgaagca acaaatgccc tgcttccagg aaaagcctct
     3601 aagcatcagg taacatcaaa tcgtacccca aaccgacaca ggtggtcagg tagagaatac
     3661 caaggcgctt gagagaactc gggtgaagga actaggcaaa atggtgccgt aacttcggga
     3721 gaaggcacgc tgacacgtag gtgaagtgat ttactcatgg agctgaagtc agtcgaagat
     3781 accagctggc tgcaactgtt tattaaaaac acagcactgt gcaaacacga aagtggacgt
     3841 atacggtgtg acgcctgccc ggtgccggaa ggttaattga tggggtcagc gcaagcgaag
     3901 ctcctgatcg aagccccggt aaacggcggc cgtaactata acggtcctaa ggtagcgaaa
     3961 ttccttgtcg ggtaagttcc gacctgcacg aatggcgtaa tgatggccag gctgtctcca
     4021 cccgagactc agtgaaattg aactcgctgt gaagatgcag tgtacccgcg gcaagacgga
     4081 aagaccccgt gaacctttac tatagcttga cactgaacat tgagccttga tgtgtaggat
     4141 aggtgggagg ctttgaagtg tggacgccag tctgcatgga gccgaccttg aaataccacc
     4201 ctttaatgtt tgatgttcta acgtggaccc gtaatccggg ttgcggacag tgtctggtgg
     4261 gtagtttgac tggggcggtc tcctcctaaa gagtaacgga ggagcacgaa ggttggctaa
     4321 tcctggtcgg acatcaggag gttagtgcaa tggcataagc cagcttgact gcgagcgtga
     4381 cggcgcgagc aggtgcgaaa gcaggtcata gtgatccggt ggttctgaat ggaagggcca
     4441 tcgctcaacg gataaaaggt actccgggga taacaggctg ataccgccca agagttcata
     4501 tcgacggcgg tgtttggcac ctcgatgtcg gctcatcaca tcctggggct gaagtaggtc
     4561 ccaagggtat ggctgttcgc catttaaagt ggtacgcgag ctgggtttag aacgtcgtga
     4621 gacagttcgg tccctatctg ccgtgggcgc tggagaactg aggggggctg ctcctagtac
     4681 gagaggaccg gagtggacgc atcactggtg ttcgggttgt catgccaatg gcactgcccg
     4741 gtagctaaat gcggaagaga taagtgctga aagcatctaa gcacgaaact tgccccgaga
     4801 tgagttctcc ctgagactta gagtctcctg aaggaacgtt gaagacgacg acgttgatag
     4861 gccgggtgtg taagcgcagc gatgcgttga gctaaccggt actaatgaac cgtgaggctt
     4921 aaccttacaa cgccgaagat gttttggcgg ttaagagaag attttcagca ctgattcaga
     4981 ttacatcaga acgtaaaaac ggtctgataa cagaatttgc ctggcggcac tagcgcggtg
     5041 gtcccacctg accccatgcc gaactcagaa gtgaaacgcc gtagcgccga tggtagtgtg
     5101 gggtctcccc atgcgagagt agggaactgc caggcatcaa atttagtgtg ctgatatggc
     5161 tcagttggta gagcgcaccc ttggtaaggg tgaggtcccc agttcgactc tgggtatcag
     5221 caccacttaa tacggttaaa gttcggtatt tgaaaaagaa tttgtctggc ggcagtagcg
     5281 cggtggtccc acctgacccc atgccgaact cagaagtgaa acgccgtagc gccgatggta
     5341 gtgtggggtc tccccatgcg agagtaggga actgccagac atcaa
//

Last Update: Wednesday, 23-Apr-2014 16:38:49 PDT
This page has been viewed 589 times.
Eric Kofoid eckofoid at ucdavis.edu