LOCUS       NC_003197               5244 bp    DNA     linear   BCT 30-APR-2009
DEFINITION  Salmonella typhimurium LT2, complete genome.
ACCESSION   NC_003197 REGION: 4394675..4399918
VERSION     NC_003197.1  GI:16763390
DBLINK      Project:241
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
            Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica
            serovar Typhimurium.
REFERENCE   1  (bases 1 to 5244)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (bases 1 to 5244)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-SEP-2004) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 5244)
  CONSRTM   NCBI Microbial Genomes Annotation Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2001) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AE006468.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5244
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /mol_type="genomic DNA"
                     /strain="LT2; SGSC 1412; ATCC 700720"
                     /db_xref="ATCC:700720"
                     /db_xref="taxon:99287"
                     /focus
     misc_feature    <1..>5244
                     /note="REFSEQ gene predictions performed by GeneMark
                     2.4/GeneMark.hmm 2.0 with comparison to original submitter
                     provided annotation; tRNA sequences predicted using
                     tRNAscan-SE 1.21."
     gene            1..1545
                     /gene="rrsE"
                     /locus_tag="STM4177"
                     /db_xref="GeneID:1255703"
     rRNA            1..1545
                     /gene="rrsE"
                     /locus_tag="STM4177"
                     /product="16S ribosomal RNA"
                     /db_xref="GeneID:1255703"
     gene            1629..1704
                     /gene="gltV"
                     /locus_tag="STM4178"
                     /db_xref="GeneID:1255704"
     tRNA            1629..1704
                     /gene="gltV"
                     /locus_tag="STM4178"
                     /product="tRNA-Glu"
                     /db_xref="GeneID:1255704"
     gene            1937..4930
                     /gene="rrlE"
                     /locus_tag="STM4179"
                     /db_xref="GeneID:1255705"
     rRNA            1937..4930
                     /gene="rrlE"
                     /locus_tag="STM4179"
                     /product="23S ribosomal RNA"
                     /db_xref="GeneID:1255705"
     gene            5123..5244
                     /gene="rrfE"
                     /locus_tag="STM4180"
                     /db_xref="GeneID:1255706"
     rRNA            5123..5244
                     /gene="rrfE"
                     /locus_tag="STM4180"
                     /product="5S ribosomal RNA"
                     /db_xref="GeneID:1255706"
ORIGIN      
        1 aaattgaaga gtttgatcat ggctcagatt gaacgctggc ggcaggccta acacatgcaa
       61 gtcgaacggt aacaggaagc agcttgctgc ttcgctgacg agtggcggac gggtgagtaa
      121 tgtctgggaa actgcctgat ggagggggat aactactgga aacggtggct aataccgcat
      181 aacgtcgcaa gaccaaagag ggggaccttc gggcctcttg ccatcagatg tgcccagatg
      241 ggattagcta gttggtgagg taacggctca ccaaggcgac gatccctagc tggtctgaga
      301 ggatgaccag ccacactgga actgagacac ggtccagact cctacgggag gcagcagtgg
      361 ggaatattgc acaatgggcg caagcctgat gcagccatgc cgcgtgtatg aagaaggcct
      421 tcgggttgta aagtactttc agcggggagg aaggtgttgt ggttaataac cgcagcaatt
      481 gacgttaccc gcagaagaag caccggctaa ctccgtgcca gcagccgcgg taatacggag
      541 ggtgcaagcg ttaatcggaa ttactgggcg taaagcgcac gcaggcggtc tgtcaagtcg
      601 gatgtgaaat ccccgggctc aacctgggaa ctgcattcga aactggcagg cttgagtctt
      661 gtagaggggg gtagaattcc aggtgtagcg gtgaaatgcg tagagatctg gaggaatacc
      721 ggtggcgaag gcggccccct ggacaaagac tgacgctcag gtgcgaaagc gtggggagca
      781 aacaggatta gataccctgg tagtccacgc cgtaaacgat gtctacttgg aggttgtgcc
      841 cttgaggcgt ggcttccgga gctaacgcgt taagtagacc gcctggggag tacggccgca
      901 aggttaaaac tcaaatgaat tgacgggggc ccgcacaagc ggtggagcat gtggtttaat
      961 tcgatgcaac gcgaagaacc ttacctggtc ttgacatcca cagaactttc cagagatgga
     1021 ttggtgcctt cgggaactgt gagacaggtg ctgcatggct gtcgtcagct cgtgttgtga
     1081 aatgttgggt taagtcccgc aacgagcgca acccttatcc tttgttgcca gcgattaggt
     1141 cgggaactca aaggagactg ccagtgataa actggaggaa ggtggggatg acgtcaagtc
     1201 atcatggccc ttacgaccag ggctacacac gtgctacaat ggcgcataca aagagaagcg
     1261 acctcgcgag agcaagcgga cctcataaag tgcgtcgtag tccggattgg agtctgcaac
     1321 tcgactccat gaagtcggaa tcgctagtaa tcgtggatca gaatgccacg gtgaatacgt
     1381 tcccgggcct tgtacacacc gcccgtcaca ccatgggagt gggttgcaaa agaagtaggt
     1441 agcttaacct tcgggagggc gcttaccact ttgtgattca tgactggggt gaagtcgtaa
     1501 caaggtaacc gtaggggaaa cctgcggttg gatcacctcc ttaccttaaa gaagcgtact
     1561 ttgaagtgct cacacagatt gtctgatgaa aagtgaatag caaggcgtct tgcgattgag
     1621 acttcagtgt ccccttcgtc tagaggccca ggacaccgcc ctttcacggc ggtaacaggg
     1681 gttcgaatcc cctaggggac gccagcgttc aaactgatga ggtcaaacct ccaggggacg
     1741 ccacttgctg gtttgtgagt gaaagtcacc tgccttaata tctcaaaact gacttacgag
     1801 tcacgtttga gatatttgct ctttaaaaat ctggatcaag ctgaaaattg aaacacagaa
     1861 caacgaaagt tgttcgtgag tctctcaaat tttcgcaaca cgatgatgaa tcgtaagaaa
     1921 catcttcggg ttgtgaggtt aagcgactaa gcgtacacgg tggatgccct ggcagtcaga
     1981 ggcgatgaag ggcgtgctaa tctgcgataa gcgccggtaa ggtgatatga accgttataa
     2041 ccggcgatac ccgaatgggg aaacccagtg tgattcgtca cactatcatt aactgaatcc
     2101 ataggttaat gaggcgaacc gggggaactg aaacatctaa gtaccccgag gaaaagaaat
     2161 caaccgagat tcccccagta gcggcgagcg aacggggagg agcccagagc ctgaatcagc
     2221 atgtgtgtta gtggaagcgt ctggaaaggt gcgcgataca gggtgacagc cccgtacaca
     2281 aaagcgcatg tgctgtgagc tcgatgagta gggcgggaca cgtggtatcc tgtctgaata
     2341 tggggggacc atcctccaag gctaaatact cctgactgac cgatagtgaa ccagtaccgt
     2401 gagggaaagg cgaaaagaac cccggcgagg ggagtgaaaa agaacctgaa accgtgtacg
     2461 tacaagcagt gggagcacag gtttacctgt gtgactgcgt accttttgta taatgggtca
     2521 gcgacttata ttctgtagca aggttaaccg tataggggag ccgtagggaa accgagtctt
     2581 aaccgggcgt taagttgcag ggtatagacc cgaaacccgg tgatctagcc atgggcaggt
     2641 tgaaggttgg gtaacactaa ctggaggacc gaaccgacta atgttgaaaa attagcggat
     2701 gacctgtggc tgggggtgaa aggccaatca aaccgggaga tagctggttc tccccgaaag
     2761 ctatttaggt agcgcctcgt gaattcatct ccgggggtag agcactgttt cggctagggg
     2821 gccatcccgg cttaccaacc cgatgcaaac tgcgaatacc ggagaatgtt atcacgggag
     2881 acacacggcg ggtgctaacg tccgtcgtga agagggaaac aacccagacc gccagctaag
     2941 gtcccaaagt catggttaag tgggaaacga tgtgggaagg cccagacagc caggatgttg
     3001 gcttagaagc agccatcatt taaagaaagc gtaatagctc actggtcgag tcggcctgcg
     3061 cggaagatgt aacggggcta aaccatgcac cgaagctgcg gcagcgaacg tatcacccaa
     3121 gacaacttta cggagttgac gattgacgga gcgaagcgac gtcaaagcgt tcattaaagt
     3181 cgagttggct tagggatacg ttcgttgggt aggggagcgt tctgtaagcc tgtgaaggtg
     3241 tgtcgtgagg catgctggag gtatcagaag tgcgaatgct gacataagta acgataaagc
     3301 gggtgaaaag cccgctcgcc ggaagaccaa gggttcctgt ccaacgttaa tcggggcagg
     3361 gtgagtcgac ccctaaggcg aggccgaaag gcgtagtcga tgggaaacgg gttaatattc
     3421 ccgtacttgg tgttactgcg aaggggggac ggagaaggct atgttggccg ggcgacggtt
     3481 gtcccggttt aagcgtgtag gtgtgtgttc caggtaaatc cggttcactt taacactgag
     3541 gcgtgacgac gaggcactac ggtgctgaag caacaaatgc cctgcttcca ggaaaagcct
     3601 ctaagcatca ggtaacacga aatcgtaccc caaaccgaca caggtggtca ggtagagaat
     3661 accaaggcgc ttgagagaac tcgggtgaag gaactaggca aaatggtgcc gtaacttcgg
     3721 gagaaggcac gctgacacgt aggtgaagtg atttactcat ggagctgaag tcagtcgaag
     3781 ataccagctg gctgcaactg tttattaaaa acacagcact gtgcaaacac gaaagtggac
     3841 gtatacggtg tgacgcctgc ccggtgccgg aaggttaatt gatggggtca gcgcaagcga
     3901 agctcctgat cgaagccccg gtaaacggcg gccgtaacta taacggtcct aaggtagcga
     3961 aattccttgt cgggtaagtt ccgacctgca cgaatggcgt aatgatggcc aggctgtctc
     4021 cacccgagac tcagtgaaat tgaactcgct gtgaagatgc agtgtacccg cggcaagacg
     4081 gaaagacccc gtgaaccttt actatagctt gacactgaac attgagcctt gatgtgtagg
     4141 ataggtggga ggctttgaag tgtggacgcc agtctgcatg gagccgacct tgaaatacca
     4201 ccctttaatg tttgatgttc taacgtggac ccgtaatccg ggttgcggac agtgtctggt
     4261 gggtagtttg actggggcgg tctcctccta aagagtaacg gaggagcacg aaggttggct
     4321 aatcctggtc ggacatcagg aggttagtgc aatggcataa gccagcttga ctgcgagcgt
     4381 gacggcgcga gcaggtgcga aagcaggtca tagtgatccg gtggttctga atggaagggc
     4441 catcgctcaa cggataaaag gtactccggg gataacaggc tgataccgcc caagagttca
     4501 tatcgacggc ggtgtttggc acctcgatgt cggctcatca catcctgggg ctgaagtagg
     4561 tcccaagggt atggctgttc gccatttaaa gtggtacgcg agctgggttt agaacgtcgt
     4621 gagacagttc ggtccctatc tgccgtgggc gctggagaac tgaggggggc tgctcctagt
     4681 acgagaggac cggagtggac gcatcactgg tgttcgggtt gtcatgccaa tggcactgcc
     4741 cggtagctaa atgcggaaga gataagtgct gaaagcatct aagcacgaaa cttgccccga
     4801 gatgagttct ccctgagact tagagtctcc tgaaggaacg ttgaagacga cgacgttgat
     4861 aggccgggtg tgtaagcgca gcgatgcgtt gagctaaccg gtactaatga accgtgaggc
     4921 ttaaccttac aacgccgaag atgttttggc ggttaagaga agattttcag cactgattcc
     4981 ggattttcgg gaacgaaaga ttttacgctg aggcaaggcg gcaaatgaag gaaaggaagg
     5041 agcatacaga agtatgtgac tgactttgcg aatgcagcca acgcagcatc ggtgtaaaag
     5101 attcgtttct ggcaacagaa tttgcctggc ggccgtagcg cggtggtccc acctgacccc
     5161 atgccgaact cagaagtgaa acgccgtagc gccgatggta gtgtggggtc tccccatgcg
     5221 agagtaggga actgccaggc atca
//

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Eric Kofoid eckofoid at ucdavis.edu