LOCUS       NC_003197               5221 bp    DNA     linear   BCT 30-APR-2009
DEFINITION  Salmonella typhimurium LT2, complete genome.
ACCESSION   NC_003197 REGION: complement(2796440..2801660)
VERSION     NC_003197.1  GI:16763390
DBLINK      Project:241
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
            Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica
            serovar Typhimurium.
REFERENCE   1  (bases 1 to 5221)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (bases 1 to 5221)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-SEP-2004) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 5221)
  CONSRTM   NCBI Microbial Genomes Annotation Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2001) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AE006468.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5221
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /mol_type="genomic DNA"
                     /strain="LT2; SGSC 1412; ATCC 700720"
                     /db_xref="ATCC:700720"
                     /db_xref="taxon:99287"
                     /focus
     misc_feature    complement(<1..>5221)
                     /note="REFSEQ gene predictions performed by GeneMark
                     2.4/GeneMark.hmm 2.0 with comparison to original submitter
                     provided annotation; tRNA sequences predicted using
                     tRNAscan-SE 1.21."
     gene            1..1543
                     /gene="rrsG"
                     /locus_tag="STM2659"
                     /db_xref="GeneID:1254182"
     rRNA            1..1543
                     /gene="rrsG"
                     /locus_tag="STM2659"
                     /product="16S ribosomal RNA"
                     /db_xref="GeneID:1254182"
     gene            1628..1703
                     /gene="gltW"
                     /locus_tag="STM2658"
                     /db_xref="GeneID:1254181"
     tRNA            1628..1703
                     /gene="gltW"
                     /locus_tag="STM2658"
                     /product="tRNA-Glu"
                     /db_xref="GeneID:1254181"
     gene            1897..4906
                     /gene="rrlG"
                     /locus_tag="STM2657"
                     /db_xref="GeneID:1254180"
     rRNA            1897..4906
                     /gene="rrlG"
                     /locus_tag="STM2657"
                     /product="23S ribosomal RNA"
                     /db_xref="GeneID:1254180"
     gene            5100..5221
                     /gene="rrfG"
                     /locus_tag="STM2656"
                     /db_xref="GeneID:1254179"
     rRNA            5100..5221
                     /gene="rrfG"
                     /locus_tag="STM2656"
                     /product="5S ribosomal RNA"
                     /db_xref="GeneID:1254179"
ORIGIN      
        1 aaattgaaga gtttgatcat ggctcagatt gaacgctggc ggcaggccta acacatgcaa
       61 gtcgaacggt aacaggaagc agcttgctgc tttgctgacg agtggcggac gggtgagtaa
      121 tgtctgggaa actgcctgat ggagggggat aactactgga aacggtggct aataccgcat
      181 aacgtcgcaa gaccaaagag ggggaccttc gggcctcttg ccatcagatg tgcccagatg
      241 ggattagctt gttggtgagg taacggctca ccaaggcgac gatccctagc tggtctgaga
      301 ggatgaccag ccacactgga actgagacac ggtccagact cctacgggag gcagcagtgg
      361 ggaatattgc acaatgggcg caagcctgat gcagccatgc cgcgtgtatg aagaaggcct
      421 tcgggttgta aagtactttc agcggggagg aaggtgttgc ggttaataac cgcagcaatt
      481 gacgttaccc gcagaagaag caccggctaa ctccgtgcca gcagccgcgg taatacggag
      541 ggtgcaagcg ttaatcggaa ttactgggcg taaagcgcac gcaggcggtc tgtcaagtcg
      601 gatgtgaaat ccccgggctc aacctgggaa ctgcattcga aactggcagg cttgagtctt
      661 gtagaggggg gtagaattcc aggtgtagcg gtgaaatgcg tagagatctg gaggaatacc
      721 ggtggcgaag gcggccccct ggacaaagac tgacgctcag gtgcgaaagc gtggggagca
      781 aacaggatta gataccctgg tagtccacgc cgtaaacgat gtctacttgg aggttgtgcc
      841 cttgaggcgt ggcttccgga gctaacgcgt taagtagacc gcctggggag tacggccgca
      901 aggttaaaac tcaaatgaat tgacgggggc ccgcacaagc ggtggagcat gtggtttaat
      961 tcgatgcaac gcgaagaacc ttacctggtc ttgacatcca cagaactttc cagagatgga
     1021 ttggtgcctt cgggaactgt gagacaggtg ctgcatggct gtcgtcagct cgtgttgtga
     1081 aatgttgggt taagtcccgc aacgagcgca acccttatcc tttgttgcca gcgattaggt
     1141 cgggaactca aaggagactg ccagtgataa actggaggaa ggtggggatg acgtcaagtc
     1201 atcatggccc ttacgaccag ggctacacac gtgctacaat ggcgcataca aagagaagcg
     1261 acctcgcgag agcaagcgga cctcataaag tgcgtcgtag tccggattgg agtctgcaac
     1321 tcgactccat gaagtcggaa tcgctagtaa tcgtggatca gaatgccacg gtgaatacgt
     1381 tcccgggcct tgtacacacc gcccgtcaca ccatgggagt gggttgcaaa agaagtaggt
     1441 agcttaacct tcgggagggc gcttaccact ttgtgattca tgactggggt gaagtcgtaa
     1501 caaggtaacc gtaggggaac ctgcggttgg atcacctcct taccttaaag aagcgtactt
     1561 tgcagtgctc acacagattg tctgatgaaa agtaaatagc aaggcgtctt gcgaagcaga
     1621 ctgatacgtc cccttcgtct agaggcccag gacaccgccc tttcacggcg gtaacagggg
     1681 ttcgaatccc ctaggggacg ccacttgctg gtttgtgagt gaaagtcacc tgccctaata
     1741 tctcaaaact gacttacgag tcacgtttga gatatttgct ctttaaaaat ctggatcaag
     1801 ctgaaaattg aaacacagaa caacgaaagt tgttcgtgag tctctcaaat tttcgcagca
     1861 cgatgatgaa tcgtaagaaa catcttcggg ttgtgaggtt aagcgactaa gcgtacacgg
     1921 tggatgccct ggcagtcaga ggcgatgaag ggcgtgctaa tctgcgataa gcgccggtaa
     1981 ggtgatatga accgttataa ccggcgatac ccgaatgggg aaacccagtg tgactcgtca
     2041 cactatcatt aactgaatcc ataggttaat gaggcgaacc gggggaactg aaacatctaa
     2101 gtaccccgag gaaaagaaat caaccgagat tcccccagta gcggcgagcg aacggggagg
     2161 agcccagagc ctgaatcagc atgtgtgtta gtggaagcgt ctggaaaggc gcgcgataca
     2221 gggtgacagc cccgtacaca aaagcgcatg tgctgtgagc tcgatgagta gggcgggaca
     2281 cgtggtatcc tgtctgaata tggggggacc atcctccaag gctaaatact cctgactgac
     2341 cgatagtgaa ccagtaccgt gagggaaagg cgaaaagaac cccggcgagg ggagtgaaaa
     2401 agaacctgaa accgtgtacg tacaagcagt gggagcccca ccaccaaagc attctctggt
     2461 gttgaaggcc ctgcaaagca gcatcgcggt ggcggagcgt cgtttgcgac gcccaacaca
     2521 caaaacaagc ggtgaatgct ttggggtggg gtgactgcgt accttttgta taatgggtca
     2581 gcgacttata ttctgtagca aggttaaccg aataggggag ccggagggaa accgagtctt
     2641 aattgggcgt taagttgcag ggtatagacc cgaaacccgg tgatctagcc atgggcaggt
     2701 tgaaggttgg gtaacactaa ctggaggacc gaaccgacta atgttgaaaa attagcggat
     2761 gacctgtggc tgggggtgaa aggccaatca aaccgggaga tagctggttc tccccgaaag
     2821 ctatttaggt agcgcctcgt gaattcatct ccgggggtag agcactgttt cggctagggg
     2881 gccatcccgg cttaccaacc cgatgcaaac tgcgaatacc ggagaatgtt atcacgggag
     2941 acacacggcg ggtgctaacg tccgtcgtga agagggaaac aacccagacc gccagctaag
     3001 gtcccaaagt catggttaag tgggaaacga tgtgggaagg cccagacagc caggatgttg
     3061 gcttagaagc agccatcatt taaagaaagc gtaatagctc actggtcgag tcggcctgcg
     3121 cggaagatgt aacggggcta aaccatgcac cgaagctgcg gcagcgacgc tgatgcgttg
     3181 ttgggtaggg gagcgttctg taagcctgcg aaggtgacct gtgagggttg ctggaggtat
     3241 cagaagtgcg aatgctgaca taagtaacga taaagcgggt gaaaagcccg ctcgccggaa
     3301 gaccaagggt tcctgtccaa cgttaatcgg ggcagggtga gtcgacccct aaggcgaggc
     3361 cgaaaggcgt agtcgatggg aaacgggtta atattcccgt acttggtgtt actgcgaagg
     3421 ggggacggag aaggctatgt tggccgggcg acggttgtcc cggtttaagc gtgtaggtgt
     3481 gtgttccagg taaatccggt tcactttaac actgaggcgt gatgacgagg cactacggtg
     3541 ctgaagcaac aaatgccctg cttccaggaa aagcctctaa gcatcaggta acatcaaatc
     3601 gtaccccaaa ccgacacagg tggtcaggta gagaatacca aggcgcttga gagaactcgg
     3661 gtgaaggaac taggcaaaat ggtgccgtaa cttcgggaga aggcacgctg acacgtaggt
     3721 gaagtgattt actcacggag ctgaagtcag tcgaagatac cagctggctg caactgttta
     3781 ttaaaaacac agcactgtgc aaacacgaaa gtggacgtat acggtgtgac gcctgcccgg
     3841 tgccggaagg ttaattgatg gggtcagcgc aagcgaagct cctgatcgaa gccccggtaa
     3901 acggcggccg taactataac ggtcctaagg tagcgaaatt ccttgtcggg taagttccga
     3961 cctgcacgaa tggcgtaatg atggccaggc tgtctccacc cgagactcag tgaaattgaa
     4021 ctcgctgtga agatgcagtg tacccgcggc aagacggaaa gaccccgtga acctttacta
     4081 tagcttgaca ctgaacattg agccttgatg tgtaggatag gtgggaggct ttgaagtgtg
     4141 gacgccagtc tgcatggagc cgaccttgaa ataccaccct ttaatgtttg atgttctaac
     4201 gtggacccgt aatccgggtt gcggacagtg tctggtgggt agtttgactg gggcggtctc
     4261 ctcctaaaga gtaacggagg agcacgaagg ttggctaatc ctggtcggac atcaggaggt
     4321 tagtgcaatg gcataagcca gcttgactgc gagcgtgacg gcgcgagcag gtgcgaaagc
     4381 aggtcatagt gatccggtgg ttctgaatgg aagggccatc gctcaacgga taaaaggtac
     4441 tccggggata acaggctgat accgcccaag agttcatatc gacggcggtg tttggcacct
     4501 cgatgtcggc tcatcacatc ctggggctga agtaggtccc aagggtatgg ctgttcgcca
     4561 tttaaagtgg tacgcgagct gggtttagaa cgtcgtgaga cagttcggtc cctatctgcc
     4621 gtgggcgctg gagaactgag gggggctgct cctagtacga gaggaccgga gtggacgcat
     4681 cactggtgtt cgggttgtca tgccaatggc actgcccggt agctaaatgc ggaagagata
     4741 agtgctgaaa gcatctaagc acgaaacttg ccccgagatg agttctccct gagactttag
     4801 gtctcctgaa ggaacgttga agacgacgac gttgataggc cgggtgtgta agcgcagcga
     4861 tgcgttgagc taaccggtac taatgaaccg tgaggcttaa ccttacaacg ccgaagatgt
     4921 tttggcggat gagaagacga ttttcagcag tgattccgga ttttcgggaa cgaaagattt
     4981 tacgctgagg caaggcggca aatgaaggaa aggaaggagc atacagaagt atgtgactga
     5041 ctttacgaat gcagccaacg cagcatcggt gtaaaagatt cgtttctggc aacagaattt
     5101 gcctggcggc actagcgcgg tggtcccacc tgaccccatg ccgaactcag aagtgaaacg
     5161 ccgtagcgcc gatggtagtg tggggtctcc ccatgcgaga gtagggaact gccaggcatc
     5221 a
//

Last Update: Wednesday, 23-Apr-2014 16:41:54 PDT
This page has been viewed 605 times.
Eric Kofoid eckofoid at ucdavis.edu