LOCUS       NC_003197               5716 bp    DNA     linear   BCT 30-APR-2009
DEFINITION  Salmonella typhimurium LT2, complete genome.
ACCESSION   NC_003197 REGION: complement(289189..294904)
VERSION     NC_003197.1  GI:16763390
DBLINK      Project:241
KEYWORDS    .
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
            Enterobacteriaceae; Salmonella; Salmonella enterica subsp. enterica
            serovar Typhimurium.
REFERENCE   1  (bases 1 to 5716)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (bases 1 to 5716)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (10-SEP-2004) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 5716)
  CONSRTM   NCBI Microbial Genomes Annotation Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-NOV-2001) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AE006468.
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5716
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /mol_type="genomic DNA"
                     /strain="LT2; SGSC 1412; ATCC 700720"
                     /db_xref="ATCC:700720"
                     /db_xref="taxon:99287"
                     /focus
     misc_feature    complement(<1..>5716)
                     /note="REFSEQ gene predictions performed by GeneMark
                     2.4/GeneMark.hmm 2.0 with comparison to original submitter
                     provided annotation; tRNA sequences predicted using
                     tRNAscan-SE 1.21."
     gene            complement(1..77)
                     /gene="aspU"
                     /locus_tag="STM0254"
                     /db_xref="GeneID:1251772"
     tRNA            complement(1..77)
                     /gene="aspU"
                     /locus_tag="STM0254"
                     /product="tRNA-Asp"
                     /db_xref="GeneID:1251772"
     gene            complement(265..386)
                     /gene="rrfH"
                     /locus_tag="STM0253"
                     /db_xref="GeneID:1251771"
     rRNA            complement(265..386)
                     /gene="rrfH"
                     /locus_tag="STM0253"
                     /product="5S ribosomal RNA"
                     /db_xref="GeneID:1251771"
     gene            complement(569..3661)
                     /gene="rrlH"
                     /locus_tag="STM0252"
                     /db_xref="GeneID:1251770"
     rRNA            complement(569..3661)
                     /gene="rrlH"
                     /locus_tag="STM0252"
                     /product="23S ribosomal RNA"
                     /db_xref="GeneID:1251770"
     gene            complement(3854..3929)
                     /gene="alaV"
                     /locus_tag="STM0251"
                     /db_xref="GeneID:1251769"
     tRNA            complement(3854..3929)
                     /gene="alaV"
                     /locus_tag="STM0251"
                     /product="tRNA-Ala"
                     /db_xref="GeneID:1251769"
     gene            complement(4039..4115)
                     /gene="ileV"
                     /locus_tag="STM0250"
                     /db_xref="GeneID:1251768"
     tRNA            complement(4039..4115)
                     /gene="ileV"
                     /locus_tag="STM0250"
                     /product="tRNA-Ile"
                     /db_xref="GeneID:1251768"
     gene            complement(4173..5716)
                     /gene="rrsH"
                     /locus_tag="STM0249"
                     /db_xref="GeneID:1251767"
     rRNA            complement(4173..5716)
                     /gene="rrsH"
                     /locus_tag="STM0249"
                     /product="16S ribosomal RNA"
                     /db_xref="GeneID:1251767"
ORIGIN      
        1 tggcggaacg gacgggactc gaacccgcga ccccctgcgt gacaggcagg tattctaacc
       61 aactgaacta ccgctccacc gaattctttt acaaccactg atttttacat cagtttactg
      121 cttaatttga tgcctggcag tttatgaatc acttcgtgat tcacccttcg ggccgttgct
      181 tcgcaacgtt caaaagcttt cgcttttgtc ctactctctg tcgagtagtg aactgccccg
      241 aaagttaatg ccatacttct aatttgatgc ctggcagttc cctactctcg catggggaga
      301 ccccacacta ccatcggcgc tacggcgttt cacttctgag ttcggcatgg ggtcaggtgg
      361 gaccaccgcg ctagtgccgc caggcaaatt ctttgtgctc cgtcctgtgt cttttacact
      421 gatacggcgt tggctgctct tgcgagcgtc agtcacatac ttctgtatgc tccttccgtc
      481 gctgcgtttg ccgccttgtc tcagcgtaaa atccttcgga ctctgaatct gagctgaaaa
      541 ttgttgtctt ctcaatccgc caaaacatct tcggcgttgt aaggttaagc ctcacggttc
      601 attagtaccg gttagctcaa cgcatcgctg cgcttacaca cccggcctat caacgtcgtc
      661 gtcttcaacg ttccttcagg agactctaag tctcagggag aactcatctc ggggcaagtt
      721 tcgtgcttag atgctttcag cacttatctc ttccgcattt agctaccggg cagtgccatt
      781 ggcatgacaa cccgaacacc agtgatgcgt ccactccggt cctctcgtac taggagcagc
      841 ccccctcagt tctccagcgc ccacggcaga tagggaccga actgtctcac gacgttctaa
      901 acccagctcg cgtaccactt taaatggcga acagccatac ccttgggacc tacttcagcc
      961 ccaggatgtg atgagccgac atcgaggtgc caaacaccgc cgtcgatatg aactcttggg
     1021 cggtatcagc ctgttatccc cggagtacct tttatccgtt gagcgatggc ccttccattc
     1081 agaaccaccg gatcactatg acctgctttc gcacctgctc gcgccgtcac gctcgcagtc
     1141 aagctggctt atgccattgc actaacctcc tgatgtccga ccaggattag ccaaccttcg
     1201 tgctcctccg ttactcttta ggaggagacc gccccagtca aactacccac cagacactgt
     1261 ccgcaacccg gattacgggt ccacgttaga acatcaaaca ttaaagggtg gtatttcaag
     1321 gtcggctcca tgcagactgg cgtccacact tcaaagcctc ccacctatcc tacacatcaa
     1381 ggctcaatgt tcagtgtcaa gctatagtaa aggttcacgg ggtctttccg tcttgccgcg
     1441 ggtacactgc atcttcacag cgagttcaat ttcactgagt ctcgggtgga gacagcctgg
     1501 ccatcattac gccattcgtg caggtcggaa cttacccgac aaggaatttc gctaccttag
     1561 gaccgttata gttacggccg ccgtttaccg gggcttcgat caggagcttc gcttgcgctg
     1621 accccatcaa ttaaccttcc ggcaccgggc aggcgtcaca ccgtatacgt ccactttcgt
     1681 gtttgcacag tgctgtgttt ttaataaaca gttgcagcca gctggtatct tcgactgact
     1741 tcagctccat gagtaaatca cttcacctac gtgtcagcgt gccttctccc gaagttacgg
     1801 caccattttg cctagttcct tcacccgagt tctctcaagc gccttggtat tctctacctg
     1861 accacctgtg tcggtttggg gtacgatttc gtgttacctg atgcttagag gcttttcctg
     1921 gaagcagggc atttgttgct tcagcaccgt agtgcctcgt cgtcacgcct cagtgttaaa
     1981 gtgaaccgga tttacctgga acacacacct acacgcttaa accgggacaa ccgtcgcccg
     2041 gccaacatag ccttctccgt ccccccttcg cagtaacacc aagtacggga atattaaccc
     2101 gtttcccatc gactacgcct ttcggcctcg ccttaggggt cgactcaccc tgccccgatt
     2161 aacgttggac aggaaccctt ggtcttccgg cgagcgggct tttcacccgc tttatcgtta
     2221 cttatgtcag cattcgcact tctgatacct ccagcatgcc tcacgacaca ccttcacagg
     2281 cttacagaac gctcccctac ccaacgaacg tatccctaag ccaactcgac tttaatgaac
     2341 gctttgacgt cgcttcgctc cgtcaatcgt caactccgta aagttgtctt gggtgatacg
     2401 ttcgctgccg cagcttcggt gcatggttta gccccgttac atcttccgcg caggccgact
     2461 cgaccagtga gctattacgc tttctttaaa tgatggctgc ttctaagcca acatcctggc
     2521 tgtctgggcc ttcccacatc gtttcccact taaccatgac tttgggacct tagctggcgg
     2581 tctgggttgt ttccctcttc acgacggacg ttagcacccg ccgtgtgtct cccgtgataa
     2641 cattctccgg tattcgcagt ttgcatcggg ttggtaagcc gggatggccc cctagccgaa
     2701 acagtgctct acccccggag atgaattcac gaggcgctac ctaaatagct ttcggggaga
     2761 accagctatc tcccggtttg attggccttt cacccccagc cacaggtcat ccgctaattt
     2821 ttcaacatta gtcggttcgg tcctccagtt agtgttaccc aaccttcaac ctgcccatgg
     2881 ctagatcacc gggtttcggg tctataccct gcaacttaac gcccaattaa gactcggttt
     2941 ccctccggct cccctattcg gttaaccttg ctacagaata taagtcgctg acccattata
     3001 caaaaggtac gcagtcaccc caccactaag ccccctctgc ttgttttgcg gttgaacgtc
     3061 gctttcgctc cgttaaccgt atcctcagca aaggatgcgg atgtggagtt caccactggc
     3121 ttagtggtgg ggctcccact gcttgtacgt acacggtttc aggttctttt tcactcccct
     3181 cgccggggtt cttttcgcct ttccctcacg gtactggttc actatcggtc agtcaggagt
     3241 atttagcctt ggaggatggt ccccccatat tcagacagga taccacgtgt cccgccctac
     3301 tcatcgagct cacagcacat gcgcttttgt gtacggggct gtcaccctgt atcgcgcgcc
     3361 tttccagacg cttccactaa cacacatgct gattcaggct ctgggctcct ccccgttcgc
     3421 tcgccgctac tgggggaatc tcggttgatt tcttttcctc ggggtactta gatgtttcag
     3481 ttcccccggt tcgcctcatt aacctatgga ttcagttaat gatagtgtga cgaatcacac
     3541 tgggtttccc cattcgggta tcgccggtta taacggttca tatcacctta ccggcgctta
     3601 tcgcagatta gcacgccctt catcgcctct gactgccagg gcatccaccg tgtacgctta
     3661 gtcgcttaac ctcacaaccc gaagatgttt cttacgattc atcatcgtgt tgcgaaaatt
     3721 tgagagactc acgaacaact ttcgttgttc tgtgtttcaa ttttcagctt gatccagatt
     3781 tttaaagagc aaaacttcgc agtgaaccct ttcaggtaca ctctgaagta ttttttcgta
     3841 aacactcacg agatggtgga gctatgcggg atcgaaccgc agacctcctg cgtgcaaagc
     3901 aggcgctctc ccagctgagc tatagcccca tcgtgtagtc agaacctctt acctttgatt
     3961 cgtttccggg cgcggcgtgg tgaagcgaag catactgaag tatgcgagct ttgccacaac
     4021 aaagcacggg agcgaatctg gtaggcctga gtggacttga accaccgacc tcacccttat
     4081 caggggtgcg ctctaaccac ctgagctaca agcctgtaga ggttttactg ctcgtttttc
     4141 atcagacaat ctgtgtgagc actgcaaagt acgcttcttt aaggtaagga ggtgatccaa
     4201 ccgcaggttc ccctacggtt accttgttac gacttcaccc cagtcatgaa tcacaaagtg
     4261 gtaagcgccc tcccgaaggt taagctacct acttcttttg caacccactc ccatggtgtg
     4321 acgggcggtg tgtacaaggc ccgggaacgt attcaccgtg gcattctgat ccacgattac
     4381 tagcgattcc gacttcatgg agtcgagttg cagactccaa tccggactac gacgcacttt
     4441 atgaggtccg cttgctctcg cgaggtcgct tctctttgta tgcgccattg tagcacgtgt
     4501 gtagccctgg tcgtaagggc catgatgact tgacgtcatc cccaccttcc tccagtttat
     4561 cactggcagt ctcctttgag ttcccggcct aaccgctggc aacaaaggat aagggttgcg
     4621 ctcgttgcgg gacttaaccc aacatttcac aacacgagct gacgacagcc atgcagcacc
     4681 tgtctcacag ttcccgaagg caccaatcca tctctggaaa gttctgtgga tgtcaagacc
     4741 aggtaaggtt cttcgcgttg catcgaatta aaccacatgc tccaccgctt gtgcgggccc
     4801 ccgtcaattc atttgagttt taaccttgcg gccgtactcc ccaggcggtc tacttaacgc
     4861 gttagctccg gaagccacgc ctcaagggca caacctccaa gtagacatcg tttacggcgt
     4921 ggactaccag ggtatctaat cctgtttgct ccccacgctt tcgcacctga gcgtcagtct
     4981 ttgtccaggg ggccgccttc gccaccggta ttcctccaga tctctacgca tttcaccgct
     5041 acacctggaa ttctaccccc ctctacaaga ctcaagcctg ccagtttcga atgcagttcc
     5101 caggttgagc ccggggattt cacatccgac ttgacagacc gcctgcgtgc gctttacgcc
     5161 cagtaattcc gattaacgct tgcaccctcc gtattaccgc ggctgctggc acggagttag
     5221 ccggtgcttc ttctgcgggt aacgtcaatt gctgcggtta ttaaccacaa caccttcctc
     5281 cccgctgaaa gtactttaca acccgaaggc cttcttcata cacgcggcat ggctgcatca
     5341 ggcttgcgcc cattgtgcaa tattccccac tgctgcctcc cgtaggagtc tggaccgtgt
     5401 ctcagttcca gtgtggctgg tcatcctctc agaccagcta gggatcgtcg ccttggtgag
     5461 ccgttacctc accaactagc taatcccatc tgggcacatc tgatggcaag aggcccgaag
     5521 gtccccctct ttggtcttgc gacgttatgc ggtattagcc accgtttcca gtagttatcc
     5581 ccctccatca ggcagtttcc cagacattac tcacccgtcc gccactcgtc agcgaagcag
     5641 caagctgctt cctgttaccg ttcgacttgc atgtgttagg cctgccgcca gcgttcaatc
     5701 tgagccatga tcaaac
//

Last Update: Wednesday, 23-Apr-2014 16:43:31 PDT
This page has been viewed 729 times.
Eric Kofoid eckofoid at ucdavis.edu