!!AA_SCORING_MATRIX_RECT 1.0 This scoring matrix was generated by MEME version 2.1 (Release date: 1997/03/25 22:39:11). For further information or to get a copy of the MEME software please access http://www.sdsc.edu/MEME. MEME reference: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= arac_frags_2.seq (deleted by web version of MEME) ALPHABET= ACDEFGHIKLMNPQRSTVWY Sequence name Length Sequence name Length ------------- ------ ------------- ------ AARP_PROST 20 ADAA_BACSU 20 ADA_ECOLI 20 ADA_MYCTU 20 ADA_SALTY 20 ADIY_ECOLI 20 AGGR_ECOLI 20 APPY_ECOLI 20 ARAC_CITFR 20 ARAC_ECOLI 20 ARAC_ERWCH 20 ARAC_SALTY 20 ARAL_STRAT 20 ARAL_STRLI 20 CAFR_YERPE 20 CELD_ECOLI 20 CFAD_ECOLI 20 ENVY_ECOLI 20 EXSA_PSEAE 20 FAPR_ECOLI 20 HRPB_BURSO 20 INVF_SALTY 20 LCRF_YERPE 20 MARA_ECOLI 20 MELR_ECOLI 20 MMSR_PSEAE 20 MSMR_STRMU 20 MXIE_SHIFL 20 PCHR_PSEAE 20 PERA_ECOLI 20 POCR_SALTY 20 RAFR_PEDPE 20 RHAR_ECOLI 20 RHAS_ECOLI 20 RHAS_SALTY 20 RNS_ECOLI 20 ROB_ECOLI 20 SOXS_ECOLI 20 TCPN_VIBCH 20 TETD_ECOLI 20 THCR_RHOSO 20 URER_ECOLI 20 URER_PROMI 20 VIRF_SHIDY 20 VIRF_YEREN 20 XYLR_ECOLI 20 XYLR_HAEIN 20 XYLS_PSEPU 20 XYS1_PSEPU 20 XYS2_PSEPU 20 XYS3_PSEPU 20 XYS4_PSEPU 20 YA52_HAEIN 20 YBBB_BACSU 20 YCGK_ALTCA 20 YFEG_ECOLI 20 YFIF_BACSU 20 YHIW_ECOLI 20 YHIX_ECOLI 20 YIDL_ECOLI 20 YIJO_ECOLI 20 YISR_BACSU 20 YMCR_STRLA 20 ******************************************************************************** MOTIF 1 width = 20 sites = 63.0 ******************************************************************************** Simplified A :21:71121::11::11::: motif letter- C ::::::::1::::::::::: probability D :23::2:::::::::::::: matrix E :21::21::::2:::11::2 F :::1:::1::::::1:::7: G :1::::::3::::::::::: H ::::::2:1::::1:11::: I 2:12:::1:1::1:1::::: K :11::11::::1:::131:3 L 5::3::1212:1:17::32: M :::::::::2:::::::1:: N ::::::::1::::::::::: P :::::::::::3:::::::: Q ::1::11::::::::1:1:1 R :11::11::::221:232:2 S :11:11111:7:31:1:::: T :::::::::11:12::1::: V 2::4:::2:2:::::::::: W ::::::::::::1::::::: Y ::::::::11:::2:1:::: bits 7.1 6.4 5.7 5.0 Information 4.3 content 3.6 (27.2 bits) 2.9 2.1 * * 1.4 * ** * * * 0.7 ****** ********** ** 0.0 -------------------- Multilevel LEDVAExVGLSPSxLxRLFK consensus L L M R K L sequence log-odds matrix: alength= 20 w= 20 n= 63 bayes= -664.386 .. Width 20 Threshold 4.0 -4.021 -3.873 -6.268 -5.593 -3.311 -5.687 -4.642 1.664 -5.298 2.553 -0.250 -5.320 -5.574 -4.784 -1.732 -4.825 -0.899 1.223 1.682 -4.183 1.287 -4.553 1.873 1.746 -4.512 -0.196 -2.582 -4.386 -0.083 -2.284 -0.500 -0.385 -4.067 -2.166 0.310 0.556 -0.732 -3.952 -4.582 -3.853 -0.144 -0.294 2.476 -0.193 -1.349 -1.913 -2.579 0.373 0.244 -4.253 0.396 -1.116 -4.064 1.196 0.832 0.356 -0.732 -1.821 -4.576 -3.848 -1.989 -4.261 -6.957 -6.350 0.639 -6.248 -5.368 1.634 -6.046 1.830 -0.351 -5.938 -6.331 -5.646 -5.903 -5.416 -1.737 2.529 -5.050 -4.790 3.340 1.303 -4.444 -4.102 -1.682 -1.732 -4.063 -3.560 -4.112 -1.783 -2.860 -4.170 -5.186 -4.102 -4.065 0.137 -1.752 -1.372 -4.075 -4.369 0.133 -4.549 1.641 1.839 -1.349 -1.913 -0.334 -4.383 0.244 -1.480 -3.344 0.099 -4.064 1.398 0.595 0.732 -2.949 -3.948 -4.578 -3.849 0.899 -0.294 -1.303 1.001 -1.349 -3.990 2.818 -1.749 0.244 0.169 -0.500 -0.384 -4.064 0.960 -0.046 -0.153 -0.254 -3.946 -4.576 -0.107 1.314 0.769 -5.829 -5.179 1.895 -2.057 -4.139 -0.043 -4.848 1.137 1.071 -4.748 -5.214 -4.493 -4.696 -0.243 -3.367 1.653 -3.994 -0.045 -0.145 2.229 -2.943 -1.255 -0.426 1.892 1.722 -4.238 -1.126 -0.581 0.402 1.375 -1.573 -2.203 -1.237 -0.500 -1.454 -3.847 -4.551 1.407 -1.761 0.769 -5.829 -5.179 -1.106 -2.057 -4.139 0.574 -4.848 1.332 3.178 -4.748 -5.214 -4.493 -4.696 -1.984 0.649 1.301 -3.993 1.678 -2.814 -2.872 -3.818 -4.598 -4.453 -0.624 -0.924 -4.639 -3.881 -4.826 -3.792 -0.245 -4.275 -4.090 -3.858 3.343 0.891 -4.759 -4.604 -4.278 -0.490 -4.552 -1.308 1.419 -4.516 -1.917 -2.597 -1.749 0.733 -0.290 -3.354 -2.695 2.561 -0.823 1.647 -2.867 -2.964 -1.822 -4.589 -1.005 -0.496 -4.217 -1.378 -2.591 0.149 -4.144 -2.776 0.414 -1.219 -3.876 -0.450 -0.420 -4.226 -2.406 2.168 1.984 0.105 -3.459 2.419 -0.095 -0.960 -0.256 -3.252 -2.677 -4.053 -4.192 2.691 -1.574 -1.254 -0.001 -3.000 0.069 -4.276 -0.195 0.286 0.548 1.689 -1.650 0.150 2.277 -2.278 -4.217 -6.150 -5.415 1.641 -6.135 -4.712 0.339 -5.193 2.915 -0.177 -5.544 -5.348 -4.445 -4.776 -5.277 -4.473 -0.530 -4.351 -1.265 -0.489 -4.549 -2.908 -0.194 -4.509 -3.997 1.973 -0.870 1.254 -4.255 -0.499 -2.682 -4.071 1.733 1.768 0.732 -1.452 -0.996 -4.580 1.622 -0.488 -4.551 -2.902 0.137 -4.510 -1.914 1.722 -1.749 2.106 -2.283 -3.346 0.099 -4.066 -0.133 2.406 -0.946 0.104 -1.822 -4.579 -3.851 -1.640 -0.257 -3.240 -1.377 -4.105 -1.109 0.490 -0.254 0.199 1.796 1.368 -2.969 -4.270 0.940 1.879 -0.993 -0.740 -1.655 -4.415 -3.809 -5.416 0.590 -6.587 -6.542 4.052 -6.696 -4.757 -3.797 -6.474 1.366 -0.551 -6.128 -6.216 -6.063 -6.335 -2.319 -5.823 -4.322 -3.459 -0.672 -1.682 -4.740 -3.145 1.423 -4.743 -0.577 -0.352 -4.578 2.481 -1.488 -3.539 -0.408 -4.284 1.404 1.789 -0.988 -3.164 -4.151 -4.750 -4.052