!!AA_SCORING_MATRIX_RECT 1.0


Identity matrix for peptides.  This matrix is used as the default for
the consensus function for SeqLab protein consensus.  All identical
matches are scored as 10, and all others (including X-X, and .-.) are
scored as 0.  Ambiguous peptides (B,Z) match their possible peptides
with a score of 10 as well.


                     June 7, 1996 14:33   ..

{
GAP_CREATE 20
GAP_EXTEND 1
}

      A    B    C    D    E     F    G    H    I    K     L    M    N    P    Q     R    S    T    V    W     Y    Z 
A    10    0    0    0    0     0    0    0    0    0     0    0    0    0    0     0    0    0    0    0     0    0 
B     0   10    0   10    0     0    0    0    0    0     0    0   10    0    0     0    0    0    0    0     0    0 
C     0    0   10    0    0     0    0    0    0    0     0    0    0    0    0     0    0    0    0    0     0    0 
D     0   10    0   10    0     0    0    0    0    0     0    0    0    0    0     0    0    0    0    0     0    0 
E     0    0    0    0   10     0    0    0    0    0     0    0    0    0    0     0    0    0    0    0     0   10 

F     0    0    0    0    0    10    0    0    0    0     0    0    0    0    0     0    0    0    0    0     0    0 
G     0    0    0    0    0     0   10    0    0    0     0    0    0    0    0     0    0    0    0    0     0    0 
H     0    0    0    0    0     0    0   10    0    0     0    0    0    0    0     0    0    0    0    0     0    0 
I     0    0    0    0    0     0    0    0   10    0     0    0    0    0    0     0    0    0    0    0     0    0 
K     0    0    0    0    0     0    0    0    0   10     0    0    0    0    0     0    0    0    0    0     0    0 

L     0    0    0    0    0     0    0    0    0    0    10    0    0    0    0     0    0    0    0    0     0    0 
M     0    0    0    0    0     0    0    0    0    0     0   10    0    0    0     0    0    0    0    0     0    0 
N     0   10    0    0    0     0    0    0    0    0     0    0   10    0    0     0    0    0    0    0     0    0 
P     0    0    0    0    0     0    0    0    0    0     0    0    0   10    0     0    0    0    0    0     0    0 
Q     0    0    0    0    0     0    0    0    0    0     0    0    0    0   10     0    0    0    0    0     0   10 

R     0    0    0    0    0     0    0    0    0    0     0    0    0    0    0    10    0    0    0    0     0    0 
S     0    0    0    0    0     0    0    0    0    0     0    0    0    0    0     0   10    0    0    0     0    0 
T     0    0    0    0    0     0    0    0    0    0     0    0    0    0    0     0    0   10    0    0     0    0 
V     0    0    0    0    0     0    0    0    0    0     0    0    0    0    0     0    0    0   10    0     0    0 
W     0    0    0    0    0     0    0    0    0    0     0    0    0    0    0     0    0    0    0   10     0    0 

Y     0    0    0    0    0     0    0    0    0    0     0    0    0    0    0     0    0    0    0    0    10    0 
Z     0    0    0    0   10     0    0    0    0    0     0    0    0    0   10     0    0    0    0    0     0   10