LOCUS NC_000913 4641652 bp DNA circular CON 08-AUG-2016 DEFINITION Escherichia coli str. K-12 substr. MG1655, complete genome. ACCESSION NC_000913 VERSION NC_000913.3 GI:556503834 DBLINK BioProject: PRJNA57779 BioSample: SAMN02604091 Assembly: GCF_000005845.2 KEYWORDS RefSeq. SOURCE Escherichia coli str. K-12 substr. MG1655 ORGANISM Escherichia coli str. K-12 substr. MG1655 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia. REFERENCE 1 (bases 1 to 4641652) AUTHORS Riley,M., Abe,T., Arnaud,M.B., Berlyn,M.K., Blattner,F.R., Chaudhuri,R.R., Glasner,J.D., Horiuchi,T., Keseler,I.M., Kosuge,T., Mori,H., Perna,N.T., Plunkett,G. III, Rudd,K.E., Serres,M.H., Thomas,G.H., Thomson,N.R., Wishart,D. and Wanner,B.L. TITLE Escherichia coli K-12: a cooperatively developed annotation snapshot--2005 JOURNAL Nucleic Acids Res. 34 (1), 1-9 (2006) PUBMED 16397293 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 4641652) AUTHORS Hayashi,K., Morooka,N., Yamamoto,Y., Fujita,K., Isono,K., Choi,S., Ohtsubo,E., Baba,T., Wanner,B.L., Mori,H. and Horiuchi,T. TITLE Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110 JOURNAL Mol. Syst. Biol. 2, 2006 (2006) PUBMED 16738553 REFERENCE 3 (bases 1 to 4641652) AUTHORS Blattner,F.R., Plunkett,G. III, Bloch,C.A., Perna,N.T., Burland,V., Riley,M., Collado-Vides,J., Glasner,J.D., Rode,C.K., Mayhew,G.F., Gregor,J., Davis,N.W., Kirkpatrick,H.A., Goeden,M.A., Rose,D.J., Mau,B. and Shao,Y. TITLE The complete genome sequence of Escherichia coli K-12 JOURNAL Science 277 (5331), 1453-1462 (1997) PUBMED 9278503 REFERENCE 4 (bases 1 to 4641652) AUTHORS Arnaud,M., Berlyn,M.K.B., Blattner,F.R., Galperin,M.Y., Glasner,J.D., Horiuchi,T., Kosuge,T., Mori,H., Perna,N.T., Plunkett,G. III, Riley,M., Rudd,K.E., Serres,M.H., Thomas,G.H. and Wanner,B.L. TITLE Workshop on Annotation of Escherichia coli K-12 JOURNAL Unpublished REMARK Woods Hole, Mass., on 14-18 November 2003 (sequence corrections) REFERENCE 5 (bases 1 to 4641652) AUTHORS Glasner,J.D., Perna,N.T., Plunkett,G. III, Anderson,B.D., Bockhorst,J., Hu,J.C., Riley,M., Rudd,K.E. and Serres,M.H. TITLE ASAP: Escherichia coli K-12 strain MG1655 version m56 JOURNAL Unpublished REMARK ASAP download 10 June 2004 (annotation updates) REFERENCE 6 (bases 1 to 4641652) AUTHORS Hayashi,K., Morooka,N., Mori,H. and Horiuchi,T. TITLE A more accurate sequence comparison between genomes of Escherichia coli K12 W3110 and MG1655 strains JOURNAL Unpublished REMARK GenBank accessions AG613214 to AG613378 (sequence corrections) REFERENCE 7 (bases 1 to 4641652) AUTHORS Perna,N.T. TITLE Escherichia coli K-12 MG1655 yqiK-rfaE intergenic region, genomic sequence correction JOURNAL Unpublished REMARK GenBank accession AY605712 (sequence corrections) REFERENCE 8 (bases 1 to 4641652) AUTHORS Rudd,K.E. TITLE A manual approach to accurate translation start site annotation: an E. coli K-12 case study JOURNAL Unpublished REFERENCE 9 (bases 1 to 4641652) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (26-AUG-2014) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 10 (bases 1 to 4641652) AUTHORS Blattner,F.R. and Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (30-JUL-2014) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA REMARK Protein update by submitter REFERENCE 11 (bases 1 to 4641652) AUTHORS Blattner,F.R. and Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (15-NOV-2013) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA REMARK Protein update by submitter REFERENCE 12 (bases 1 to 4641652) AUTHORS Blattner,F.R. and Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (26-SEP-2013) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA REMARK Sequence update by submitter REFERENCE 13 (bases 1 to 4641652) AUTHORS Rudd,K.E. TITLE Direct Submission JOURNAL Submitted (06-FEB-2013) Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, 118 Gautier Bldg., Miami, FL 33136, USA REMARK Sequence update by submitter REFERENCE 14 (bases 1 to 4641652) AUTHORS Rudd,K.E. TITLE Direct Submission JOURNAL Submitted (24-APR-2007) Department of Biochemistry and Molecular Biology, University of Miami Miller School of Medicine, 118 Gautier Bldg., Miami, FL 33136, USA REMARK Annotation update from ecogene.org as a multi-database collaboration REFERENCE 15 (bases 1 to 4641652) AUTHORS Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (07-FEB-2006) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA REMARK Protein updates by submitter REFERENCE 16 (bases 1 to 4641652) AUTHORS Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (10-JUN-2004) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA REMARK Sequence update by submitter REFERENCE 17 (bases 1 to 4641652) AUTHORS Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (13-OCT-1998) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA REFERENCE 18 (bases 1 to 4641652) AUTHORS Blattner,F.R. and Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (02-SEP-1997) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA REFERENCE 19 (bases 1 to 4641652) AUTHORS Blattner,F.R. and Plunkett,G. III. TITLE Direct Submission JOURNAL Submitted (16-JAN-1997) Laboratory of Genetics, University of Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence is identical to U00096. On Nov 3, 2013 this sequence version replaced NC_000913.2. RefSeq Category: Reference Genome FGS: First Genome sequenced MOD: Model Organism PHY: Based on Phylogenetics UPR: UniProt Genome Current U00096 annotation updates are derived from EcoGene http://ecogene.org. Suggestions for updates can be sent to Dr. Kenneth Rudd (krudd@miami.edu). These updates are being generated from a collaboration that also includes ASAP/ERIC, the Coli Genetic Stock Center, EcoliHub, EcoCyc, RegulonDB and UniProtKB/Swiss-Prot. COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..4641652 /organism="Escherichia coli str. K-12 substr. MG1655" /mol_type="genomic DNA" /strain="K-12" /sub_strain="MG1655" /db_xref="taxon:511145" gene 190..255 /gene="thrL" /locus_tag="b0001" /gene_synonym="ECK0001; JW4367" /db_xref="EcoGene:EG11277" /db_xref="GeneID:944742" CDS 190..255 /gene="thrL" /locus_tag="b0001" /gene_synonym="ECK0001; JW4367" /function="leader; Amino acid biosynthesis: Threonine" /GO_process="GO:0009088 - threonine biosynthetic process" /codon_start=1 /transl_table=11 /product="thr operon leader peptide" /protein_id="NP_414542.1" /db_xref="GI:16127995" /db_xref="ASAP:ABE-0000006" /db_xref="UniProtKB/Swiss-Prot:P0AD86" /db_xref="EcoGene:EG11277" /db_xref="GeneID:944742" /translation="MKRISTTITTTITITTGNGAG" gene 337..2799 /gene="thrA" /locus_tag="b0002" /gene_synonym="ECK0002; Hs; JW0001; thrA1; thrA2; thrD" /db_xref="EcoGene:EG10998" /db_xref="GeneID:945803" CDS 337..2799 /gene="thrA" /locus_tag="b0002" /gene_synonym="ECK0002; Hs; JW0001; thrA1; thrA2; thrD" /EC_number="1.1.1.3" /EC_number="2.7.2.4" /function="enzyme; Amino acid biosynthesis: Threonine" /experiment="N-terminus verified by Edman degradation: PMID 354697,4562989" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009090 - homoserine biosynthetic process; GO:0009086 - methionine biosynthetic process; GO:0009088 - threonine biosynthetic process" /note="bifunctional: aspartokinase I (N-terminal); homoserine dehydrogenase I (C-terminal)" /codon_start=1 /transl_table=11 /product="Bifunctional aspartokinase/homoserine dehydrogenase 1" /protein_id="NP_414543.1" /db_xref="GI:16127996" /db_xref="ASAP:ABE-0000008" /db_xref="UniProtKB/Swiss-Prot:P00561" /db_xref="EcoGene:EG10998" /db_xref="GeneID:945803" /translation="MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKIT NHLVAMIEKTISGQDALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIK HVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHY LESTVDIAESTRRIAASRIPADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACL RADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQF QIPCLIKNTGNPQAPGTLIGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAAR VFAAMSRARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAV TERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATT GVRVTHQMLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSWLKNKHIDLRVCGVANSKA LLTNVHGLNLENWQEELAQAKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYAD FLREGFHVVTPNKKANTSSMDYYHQLRYAAEKSRRKFLYDTNVGAGLPVIENLQNLLN AGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARK LLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARDEG KVLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAG NDVTAAGVFADLLRTLSWKLGV" gene 2801..3733 /gene="thrB" /locus_tag="b0003" /gene_synonym="ECK0003; JW0002" /db_xref="EcoGene:EG10999" /db_xref="GeneID:947498" CDS 2801..3733 /gene="thrB" /locus_tag="b0003" /gene_synonym="ECK0003; JW0002" /EC_number="2.7.1.39" /function="enzyme; Amino acid biosynthesis: Threonine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009088 - threonine biosynthetic process" /codon_start=1 /transl_table=11 /product="homoserine kinase" /protein_id="NP_414544.1" /db_xref="GI:16127997" /db_xref="ASAP:ABE-0000010" /db_xref="UniProtKB/Swiss-Prot:P00547" /db_xref="EcoGene:EG10999" /db_xref="GeneID:947498" /translation="MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETF SLNNLGRFADKLPSEPRENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACS VVAALMAMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDI ISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQ PELAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPETA QRVADWLGKNYLQNQEGFVHICRLDTAGARVLEN" gene 3734..5020 /gene="thrC" /locus_tag="b0004" /gene_synonym="ECK0004; JW0003" /db_xref="EcoGene:EG11000" /db_xref="GeneID:945198" CDS 3734..5020 /gene="thrC" /locus_tag="b0004" /gene_synonym="ECK0004; JW0003" /EC_number="4.2.3.1" /function="enzyme; Amino acid biosynthesis: Threonine" /experiment="N-terminus verified by Edman degradation: PMID 9298646,9600841,9740056" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009088 - threonine biosynthetic process" /codon_start=1 /transl_table=11 /product="L-threonine synthase" /protein_id="NP_414545.1" /db_xref="GI:16127998" /db_xref="ASAP:ABE-0000012" /db_xref="UniProtKB/Swiss-Prot:P00934" /db_xref="EcoGene:EG11000" /db_xref="GeneID:945198" /translation="MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEID EMLKLDFVTRSAKILSAFIGDEIPQEILEERVRAAFAFPAPVANVESDVGCLELFHGP TLAFKDFGGRFMAQMLTHIAGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRG KISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSANSINISR LLAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVN DTVPRFLHDGQWSPKATQATLSNAMDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDE TTQQTMRELKELGYTSEPHAAVAYRALRDQLNPGEYGLFLGTAHPAKFKESVEAILGE TLDLPKELAERADLPLLSHNLPADFAALRKLMMNHQ" gene 5234..5530 /gene="yaaX" /locus_tag="b0005" /gene_synonym="ECK0005; JW0004" /db_xref="EcoGene:EG14384" /db_xref="GeneID:944747" CDS 5234..5530 /gene="yaaX" /locus_tag="b0005" /gene_synonym="ECK0005; JW0004" /codon_start=1 /transl_table=11 /product="DUF2502 family putative periplasmic protein" /protein_id="NP_414546.1" /db_xref="GI:16127999" /db_xref="ASAP:ABE-0000015" /db_xref="UniProtKB/Swiss-Prot:P75616" /db_xref="EcoGene:EG14384" /db_xref="GeneID:944747" /translation="MKKMQSIVLALSLVLVAPMAAQAAEITLVPSVKLQIGDRDNRGY YWDGGHWRDHGWWKQHYEWRGNRWHLHGPPPPPRHHKKAPHDHHGGHGPGKHHR" repeat_region 5565..5669 /note="RIP1 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(5683..6459) /gene="yaaA" /locus_tag="b0006" /gene_synonym="ECK0006; JW0005" /db_xref="EcoGene:EG10011" /db_xref="GeneID:944749" CDS complement(5683..6459) /gene="yaaA" /locus_tag="b0006" /gene_synonym="ECK0006; JW0005" /codon_start=1 /transl_table=11 /product="peroxide resistance protein, lowers intracellular iron" /protein_id="NP_414547.1" /db_xref="GI:16128000" /db_xref="ASAP:ABE-0000018" /db_xref="UniProtKB/Swiss-Prot:P0A8I3" /db_xref="EcoGene:EG10011" /db_xref="GeneID:944749" /translation="MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPP QISTLMRISDKLAGINAARFHDWQPDFTPANARQAILAFKGDVYTGLQAETFSEDDFD FAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENARGKDLYQFWGDIITNKLNEALA AQGDNVVINLASDEYFKSVKPKKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLMSRF IIENRLTKPEQLTGFNSEGYFFDEDSSSNGELVFKRYEQR" gene complement(6529..7959) /gene="yaaJ" /locus_tag="b0007" /gene_synonym="ECK0007; JW0006" /db_xref="EcoGene:EG11555" /db_xref="GeneID:944745" CDS complement(6529..7959) /gene="yaaJ" /locus_tag="b0007" /gene_synonym="ECK0007; JW0006" /function="putative transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="inner membrane transport protein" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="NP_414548.1" /db_xref="GI:16128001" /db_xref="ASAP:ABE-0000020" /db_xref="UniProtKB/Swiss-Prot:P30143" /db_xref="EcoGene:EG11555" /db_xref="GeneID:944745" /translation="MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFG KSLKNSIHPQPGGLTSFQSLCTSLAARVGSGNLAGVALAITAGGPGAVFWMWVAAFIG MATSFAECSLAQLYKERDVNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSG VQANAVARALSFSFDFPPLVTGIILAVFTLLAITRGLHGVARLMQGFVPLMAIIWVLT SLVICVMNIGQLPHVIWSIFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMG STPNAAAAAASWPPHPAAQGIVQMIGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQ LIQKAMRVLMGSWGAEFVTLVVILFAFSSIVANYIYAENNLFFLRLNNPKAIWCLRIC TFATVIGGTLLSLPLMWQLADIIMACMAITNLTAILLLSPVVHTIASDYLRQRKLGVR PVFDPLRYPDIGRQLSPDAWDDVSQE" gene 8238..9191 /gene="talB" /locus_tag="b0008" /gene_synonym="ECK0008; JW0007; yaaK" /db_xref="EcoGene:EG11556" /db_xref="GeneID:944748" CDS 8238..9191 /gene="talB" /locus_tag="b0008" /gene_synonym="ECK0008; JW0007; yaaK" /EC_number="2.2.1.2" /function="enzyme; Central intermediary metabolism: Non-oxidative branch, pentose pathway" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009052 - pentose-phosphate shunt, non-oxidative branch" /codon_start=1 /transl_table=11 /product="transaldolase B" /protein_id="NP_414549.1" /db_xref="GI:16128002" /db_xref="ASAP:ABE-0000027" /db_xref="UniProtKB/Swiss-Prot:P0A870" /db_xref="EcoGene:EG11556" /db_xref="GeneID:944748" /translation="MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQ IPEYRKLIDDAVAWAKQQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLS YDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFS FAQARACAEAGVFLISPFVGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGY ETVVMGASFRNIGEILELAGCDRLTIAPALLKELAESEGAIERKLSYTGEVKARPARI TESEFLWQHNQDPMAVDKLAEGIRKFAIDQEKLEKMIGDLL" gene 9306..9893 /gene="mog" /locus_tag="b0009" /gene_synonym="bisD; chlG; ECK0009; JW0008; mogA; yaaG" /db_xref="EcoGene:EG11511" /db_xref="GeneID:944760" CDS 9306..9893 /gene="mog" /locus_tag="b0009" /gene_synonym="bisD; chlG; ECK0009; JW0008; mogA; yaaG" /function="transport; Biosynthesis of cofactors, carriers: Molybdopterin" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006777 - Mo-molybdopterin cofactor biosynthetic process" /note="putative molybdochetalase in molybdopterine biosynthesis" /codon_start=1 /transl_table=11 /product="molybdochelatase incorporating molybdenum into molybdopterin" /protein_id="NP_414550.1" /db_xref="GI:16128003" /db_xref="ASAP:ABE-0000030" /db_xref="UniProtKB/Swiss-Prot:P0AF03" /db_xref="EcoGene:EG11511" /db_xref="GeneID:944760" /translation="MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELET RLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQ MRQISLHFVPTAILSRQVGVIRKQALILNLPGQPKSIKETLEGVKDAEGNVVVHGIFA SVPYCIQLLEGPYVETAPEVVAAFRPKSARRDVSE" gene complement(9928..10494) /gene="satP" /locus_tag="b0010" /gene_synonym="ECK0010; JW0009; yaaH" /db_xref="EcoGene:EG11512" /db_xref="GeneID:944792" CDS complement(9928..10494) /gene="satP" /locus_tag="b0010" /gene_synonym="ECK0010; JW0009; yaaH" /codon_start=1 /transl_table=11 /product="succinate-acetate transporter" /protein_id="NP_414551.1" /db_xref="GI:16128004" /db_xref="ASAP:ABE-0000032" /db_xref="UniProtKB/Swiss-Prot:P0AC98" /db_xref="EcoGene:EG11512" /db_xref="GeneID:944792" /translation="MGNTKLANPAPLGLMGFGMTTILLNLHNVGYFALDGIILAMGIF YGGIAQIFAGLLEYKKGNTFGLTAFTSYGSFWLTLVAILLMPKLGLTDAPNAQFLGVY LGLWGVFTLFMFFGTLKGARVLQFVFFSLTVLFALLAIGNIAGNAAIIHFAGWIGLIC GASAIYLAMGEVLNEQFGRTVLPIGESH" gene complement(10643..11356) /gene="yaaW" /locus_tag="b0011" /gene_synonym="ECK0011; JW0010" /db_xref="EcoGene:EG14340" /db_xref="GeneID:944771" CDS complement(10643..11356) /gene="yaaW" /locus_tag="b0011" /gene_synonym="ECK0011; JW0010" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="UPF0174 family protein" /protein_id="NP_414552.1" /db_xref="GI:16128005" /db_xref="ASAP:ABE-0000037" /db_xref="UniProtKB/Swiss-Prot:P75617" /db_xref="EcoGene:EG14340" /db_xref="GeneID:944771" /translation="MNVNYLNDSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLM RNELFKSMEGHPEQHRRNWQLIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKL KADKEMSTFEIEQQLLEQFLRNTWKKMDEEHKQEFLHAVDARVNELEELLPLLMKDKL LAKGVSHLLSSQLTRILRTHAAMSVLGHGLLRGAGLGGPVGAALNGVKAVSGSAYRVT IPAVLQIACLRRMVSATQV" gene complement(11382..11786) /gene="yaaI" /locus_tag="b0013" /gene_synonym="ECK0013; JW0012" /db_xref="EcoGene:EG11513" /db_xref="GeneID:944751" CDS complement(11382..11786) /gene="yaaI" /locus_tag="b0013" /gene_synonym="ECK0013; JW0012" /codon_start=1 /transl_table=11 /product="UPF0412 family protein" /protein_id="NP_414554.1" /db_xref="GI:16128007" /db_xref="ASAP:ABE-0000043" /db_xref="UniProtKB/Swiss-Prot:P28696" /db_xref="EcoGene:EG11513" /db_xref="GeneID:944751" /translation="MKSVFTISASLAISLMLCCTAQANDHKLLGAIAMPRNETNDLAL KLPVCRIVKRIQLSADHGDLQLSGASVYFKAARSASQSLNIPSEIKEGQTTDWININS DNDNKRCVSKITFSGHTVNSSDMATLKIIGDD" gene 12163..14079 /gene="dnaK" /locus_tag="b0014" /gene_synonym="ECK0014; groPAB; groPC; groPF; grpC; grpF; JW0013; seg" /db_xref="EcoGene:EG10241" /db_xref="GeneID:944750" CDS 12163..14079 /gene="dnaK" /locus_tag="b0014" /gene_synonym="ECK0014; groPAB; groPC; groPF; grpC; grpF; JW0013; seg" /function="factor; Chaperones" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006457 - protein folding; GO:0006970 - response to osmotic stress" /note="chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins" /codon_start=1 /transl_table=11 /product="chaperone Hsp70, with co-chaperone DnaJ" /protein_id="NP_414555.1" /db_xref="GI:16128008" /db_xref="ASAP:ABE-0000052" /db_xref="UniProtKB/Swiss-Prot:P0A6Y8" /db_xref="EcoGene:EG10241" /db_xref="GeneID:944750" /translation="MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQ DGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAW VEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEV LATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSA QQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDI DDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLL DVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAAD NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN EDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE SALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHAQQQTAGADASANNAKDD DVVDAEFEEVKDKK" gene 14168..15298 /gene="dnaJ" /locus_tag="b0015" /gene_synonym="ECK0015; faa; groP; grpC; JW0014" /db_xref="EcoGene:EG10240" /db_xref="GeneID:944753" CDS 14168..15298 /gene="dnaJ" /locus_tag="b0015" /gene_synonym="ECK0015; faa; groP; grpC; JW0014" /function="factor; Chaperones" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006457 - protein folding" /note="chaperone with DnaK; heat shock protein" /codon_start=1 /transl_table=11 /product="chaperone Hsp40, DnaK co-chaperone" /protein_id="NP_414556.1" /db_xref="GI:16128009" /db_xref="ASAP:ABE-0000054" /db_xref="UniProtKB/Swiss-Prot:P08622" /db_xref="EcoGene:EG10240" /db_xref="GeneID:944753" /translation="MAKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAE AKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIF GGGRGRQRAARGADLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQT CPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPA GVDTGDRIRLAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAAL GGEIEVPTLDGRVKLKVPGETQTGKLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLN ERQKQLLQELQESFGGPTGEHNSPRSKSFFDGVKKFFDDLTR" mobile_element 15387..16731 /mobile_element_type="insertion sequence:IS186A" gene 15445..16557 /gene="insL1" /locus_tag="b0016" /gene_synonym="ECK0016" /db_xref="EcoGene:EG40012" /db_xref="GeneID:944754" CDS 15445..16557 /gene="insL1" /locus_tag="b0016" /gene_synonym="ECK0016" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS186 transposase" /protein_id="NP_414557.1" /db_xref="GI:16128010" /db_xref="ASAP:ABE-0000058" /db_xref="UniProtKB/Swiss-Prot:P0CF91" /db_xref="EcoGene:EG40012" /db_xref="GeneID:944754" /translation="MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLL RLGLAYGPGGMSLREVTAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAVRAAV TGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRFA QTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGL DCGKNGETTVMIGNSGNKKAGAPFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQA ETLEAAGHVLLLTSLPEDEYSAEQVADCYRLRWQIELAFKRLKSLLHLDALRAKEPEL AKAWIFANLLAAFLIDDIIQPSLDFPPRSAGSEKKN" gene complement(16751..16960) /gene="mokC" /locus_tag="b0018" /gene_synonym="ECK4466; gefL" /db_xref="EcoGene:EG12074" /db_xref="GeneID:944756" CDS complement(16751..16960) /gene="mokC" /locus_tag="b0018" /gene_synonym="ECK4466; gefL" /note="regulatory peptide whose translation enables hokC (gef) expression; completely contained in another CDS" /codon_start=1 /transl_table=11 /product="regulatory protein for HokC, overlaps CDS of hokC" /protein_id="NP_414559.1" /db_xref="GI:16128012" /db_xref="ASAP:ABE-0000064" /db_xref="UniProtKB/Swiss-Prot:P33236" /db_xref="EcoGene:EG12074" /db_xref="GeneID:944756" /translation="MLNTCRVPLTDRKVKEKRAMKQHKAMIVALIVICITAVVAALVT RKDLCEVHIRTGQTEVAVFTAYESE" gene complement(16751..16903) /gene="hokC" /locus_tag="b4412" /gene_synonym="ECK0018; gef; JW5879" /db_xref="EcoGene:EG10373" /db_xref="GeneID:2847744" CDS complement(16751..16903) /gene="hokC" /locus_tag="b4412" /gene_synonym="ECK0018; gef; JW5879" /note="small toxic membrane polypeptide; completely contained in another CDS" /codon_start=1 /transl_table=11 /product="toxic membrane protein, small" /protein_id="YP_025292.1" /db_xref="GI:49175991" /db_xref="ASAP:ABE-0047278" /db_xref="UniProtKB/Swiss-Prot:P0ACG4" /db_xref="EcoGene:EG10373" /db_xref="GeneID:2847744" /translation="MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF TAYESE" gene 16952..17006 /gene="sokC" /locus_tag="b4413" /gene_synonym="ECK0019; JWR0224; sof" /db_xref="EcoGene:EG31128" /db_xref="GeneID:2847745" ncRNA 16952..17006 /ncRNA_class="antisense_RNA" /gene="sokC" /locus_tag="b4413" /gene_synonym="ECK0019; JWR0224; sof" /product="sRNA antisense regulator blocking mokC, and hence hokC, translation" /note="IS186A interrupts hokC transcript downstream of hokC gene in K-12" /function="component of addiction module" /db_xref="ASAP:ABE-0047238" /db_xref="EcoGene:EG31128" /db_xref="GeneID:2847745" gene 17489..18655 /gene="nhaA" /locus_tag="b0019" /gene_synonym="ant; antA; ECK0020; JW0018" /db_xref="EcoGene:EG10652" /db_xref="GeneID:944758" CDS 17489..18655 /gene="nhaA" /locus_tag="b0019" /gene_synonym="ant; antA; ECK0020; JW0018" /function="transport; Transport of small molecules: Cations" /experiment="N-terminus verified by Edman degradation: PMID 8381959" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009268 - response to pH" /note="Na+/H antiporter, pH dependent" /codon_start=1 /transl_table=11 /product="sodium-proton antiporter" /protein_id="NP_414560.1" /db_xref="GI:16128013" /db_xref="ASAP:ABE-0000068" /db_xref="UniProtKB/Swiss-Prot:P13738" /db_xref="EcoGene:EG10652" /db_xref="GeneID:944758" /translation="MKHLHRFFSSDASGGIILIIAAILAMIMANSGATSGWYHDFLET PVQLRVGSLEINKNMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAI GGMIVPALLYLAFNYADPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALA IIDDLGAIIIIALFYTNDLSMASLGVAAVAIAVLAVLNLCGARRTGVYILVGVVLWTA VLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSL QGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGIL CGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRLRPSV" gene 18715..19620 /gene="nhaR" /locus_tag="b0020" /gene_synonym="antO; ECK0021; JW0019; yaaB" /db_xref="EcoGene:EG11078" /db_xref="GeneID:944757" CDS 18715..19620 /gene="nhaR" /locus_tag="b0020" /gene_synonym="antO; ECK0021; JW0019; yaaB" /function="regulator; Transport of small molecules: Cations" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0009268 - response to pH; GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="transcriptional activator of nhaA" /protein_id="NP_414561.1" /db_xref="GI:16128014" /db_xref="ASAP:ABE-0000072" /db_xref="UniProtKB/Swiss-Prot:P0A9G2" /db_xref="EcoGene:EG11078" /db_xref="GeneID:944757" /translation="MSMSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRAL EERLQGKLFKRKGRGLEPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVA DALSKRLVSSVLNAAVVEGEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQE GLFSVRIGECGVSFWCTNPPPEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNV EILGEFDDAALMKAFGAMHNAIFVAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAE RMIQHPAVQRICNTDYSALFSPAVR" mobile_element complement(19796..20563) /mobile_element_type="insertion sequence:IS1A" gene complement(19811..20314) /gene="insB1" /locus_tag="b0021" /gene_synonym="ECK0022" /db_xref="EcoGene:EG40002" /db_xref="GeneID:944743" CDS complement(19811..20314) /gene="insB1" /locus_tag="b0021" /gene_synonym="ECK0022" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS1 transposase B" /protein_id="NP_414562.1" /db_xref="GI:16128015" /db_xref="ASAP:ABE-0000075" /db_xref="UniProtKB/Swiss-Prot:P0CF25" /db_xref="EcoGene:EG40002" /db_xref="GeneID:944743" /translation="MPGNSPHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY LNIKHYQ" gene complement(20233..20508) /gene="insA" /locus_tag="b0022" /gene_synonym="ECK0023" /note="insA1" /db_xref="EcoGene:EG40001" /db_xref="GeneID:948449" CDS complement(20233..20508) /gene="insA" /locus_tag="b0022" /gene_synonym="ECK0023" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS1 repressor TnpA" /protein_id="NP_414563.1" /db_xref="GI:16128016" /db_xref="ASAP:ABE-0000078" /db_xref="UniProtKB/Swiss-Prot:P0CF07" /db_xref="EcoGene:EG40001" /db_xref="GeneID:948449" /translation="MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKNSGRSR" gene complement(20815..21078) /gene="rpsT" /locus_tag="b0023" /gene_synonym="ECK0024; JW0022; sup" /db_xref="EcoGene:EG10919" /db_xref="GeneID:944759" CDS complement(20815..21078) /gene="rpsT" /locus_tag="b0023" /gene_synonym="ECK0024; JW0022; sup" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S20" /protein_id="NP_414564.1" /db_xref="GI:16128017" /db_xref="ASAP:ABE-0000082" /db_xref="UniProtKB/Swiss-Prot:P0A7U7" /db_xref="EcoGene:EG10919" /db_xref="GeneID:944759" /translation="MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDK AAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA" gene 21181..21399 /gene="yaaY" /locus_tag="b0024" /gene_synonym="ECK0025; JW5003" /db_xref="EcoGene:EG14386" /db_xref="GeneID:949128" CDS 21181..21399 /gene="yaaY" /locus_tag="b0024" /gene_synonym="ECK0025; JW5003" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_414565.1" /db_xref="GI:16128018" /db_xref="ASAP:ABE-0000089" /db_xref="UniProtKB/Swiss-Prot:P75620" /db_xref="EcoGene:EG14386" /db_xref="GeneID:949128" /translation="MCRHSLRSDGAGFYQLAGCEYSFSAIKIAAGGQFLPVICAMAMK SHFFLISVLNRRLTLTAVQGILGRFSLF" gene 21407..22348 /gene="ribF" /locus_tag="b0025" /gene_synonym="ECK0026; JW0023; yaaC" /db_xref="EcoGene:EG11079" /db_xref="GeneID:949129" CDS 21407..22348 /gene="ribF" /locus_tag="b0025" /gene_synonym="ECK0026; JW0023; yaaC" /EC_number="2.7.1.26" /EC_number="2.7.7.2" /function="putative regulator; Not classified" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="bifunctional riboflavin kinase/FAD synthetase" /protein_id="NP_414566.1" /db_xref="GI:16128019" /db_xref="ASAP:ABE-0000091" /db_xref="UniProtKB/Swiss-Prot:P0AG40" /db_xref="EcoGene:EG11079" /db_xref="GeneID:949129" /translation="MKLIRGIHNLSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGR KRNLPVMVMLFEPQPLELFATDKAPARLTRLREKLRYLAECGVDYVLCVRFDRRFAAL TAQNFISDLLVKHLRVKFLAVGDDFRFGAGREGDFLLLQKAGMEYGFDITSTQTFCEG GVRISSTAVRQALADDNLALAESLLGHPFAISGRVVHGDELGRTIGFPTANVPLRRQV SPVKGVYAVEVLGLGEKPLPGVANIGTRPTVAGIRQQLEVHLLDVAMDLYGRHIQVVL RKKIRNEQRFASLDELKAQIARDELTAREFFGLTKPA" gene 22391..25207 /gene="ileS" /locus_tag="b0026" /gene_synonym="ECK0027; ilvS; JW0024" /db_xref="EcoGene:EG10492" /db_xref="GeneID:944761" CDS 22391..25207 /gene="ileS" /locus_tag="b0026" /gene_synonym="ECK0027; ilvS; JW0024" /EC_number="6.1.1.5" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="isoleucine tRNA synthetase" /codon_start=1 /transl_table=11 /product="isoleucyl-tRNA synthetase" /protein_id="NP_414567.1" /db_xref="GI:16128020" /db_xref="ASAP:ABE-0000094" /db_xref="UniProtKB/Swiss-Prot:P00956" /db_xref="EcoGene:EG10492" /db_xref="GeneID:944761" /translation="MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAA KKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPI ELKVEQEYGKPGEKFTAAEFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFK TEANIIRALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFQAVD QDALKAKFAVSNVNGPISLVIWTTTPWTLPANRAISIAPDFDYALVQIDGQAVILAKD LVESVMQRIGVTDYTILGTVKGAELELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHT APGHGPDDYVIGQKYGLETANPVGPDGTYLPGTYPTLDGVNVFKANDIVVALLQEKGA LLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDQKGLRAQSLKEIKGVQWIPDWGQA RIESMVANRPDWCISRQRTWGVPMSLFVHKDTEELHPRTLELMEEVAKRVEVDGIQAW WDLDAKEILGDEADQYVKVPDTLDVWFDSGSTHSSVVDVRPEFAGHAADMYLEGSDQH RGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGADI LRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNGFDPAKDMVKPEEMV VLDRWAVGCAKAAQEDILKAYEAYDFHEVVQRLMRFCSVEMGSFYLDIIKDRQYTAKA DSVARRSCQTALYHIAEALVRWMAPILSFTADEVWGYLPGEREKYVFTGEWYEGLFGL ADSEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAVTLYAEPELSAKLTALG DELRFVLLTSGATVADYNDAPADAQQSEVLKGLKVALSKAEGEKCPRCWHYTQDVGKV AEHAEICGRCVSNVAGDGEKRKFA" gene 25207..25701 /gene="lspA" /locus_tag="b0027" /gene_synonym="ECK0028; JW0025" /db_xref="EcoGene:EG10548" /db_xref="GeneID:944800" CDS 25207..25701 /gene="lspA" /locus_tag="b0027" /gene_synonym="ECK0028; JW0025" /EC_number="3.4.23.36" /function="enzyme; Protein, peptide secretion" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="prolipoprotein signal peptidase (SPase II)" /codon_start=1 /transl_table=11 /product="prolipoprotein signal peptidase (signal peptidase II)" /protein_id="NP_414568.1" /db_xref="GI:16128021" /db_xref="ASAP:ABE-0000096" /db_xref="UniProtKB/Swiss-Prot:P00804" /db_xref="EcoGene:EG10548" /db_xref="GeneID:944800" /translation="MSQSICSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVPLFP SLNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGISVILAVMMYRSKATQKLNNIAYA LIIGGALGNLFDRLWHGFVVDMIDFYVGDWHFATFNLADTAICVGAALIVLEGFLPSR AKKQ" repeat_region 25710..25795 /note="REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene 25826..26275 /gene="fkpB" /locus_tag="b0028" /gene_synonym="ECK0029; JW0026; slpA; yaaD" /db_xref="EcoGene:EG11080" /db_xref="GeneID:944807" CDS 25826..26275 /gene="fkpB" /locus_tag="b0028" /gene_synonym="ECK0029; JW0026; slpA; yaaD" /EC_number="5.2.1.8" /function="putative enzyme; Proteins - translation and modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006457 - protein folding" /codon_start=1 /transl_table=11 /product="FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)" /protein_id="NP_414569.1" /db_xref="GI:16128022" /db_xref="ASAP:ABE-0000101" /db_xref="UniProtKB/Swiss-Prot:P0AEM0" /db_xref="EcoGene:EG11080" /db_xref="GeneID:944807" /translation="MSESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASL SEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFT AMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPALEA" gene 26277..27227 /gene="ispH" /locus_tag="b0029" /gene_synonym="ECK0030; JW0027; lytB; yaaE" /db_xref="EcoGene:EG11081" /db_xref="GeneID:944777" CDS 26277..27227 /gene="ispH" /locus_tag="b0029" /gene_synonym="ECK0030; JW0027; lytB; yaaE" /EC_number="1.17.1.2" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0042493 - response to drug" /codon_start=1 /transl_table=11 /product="4-hydroxy-3-methylbut-2-enyl diphosphate reductase, 4Fe-4S protein" /protein_id="NP_414570.1" /db_xref="GI:16128023" /db_xref="ASAP:ABE-0000103" /db_xref="UniProtKB/Swiss-Prot:P62623" /db_xref="EcoGene:EG11081" /db_xref="GeneID:944777" /translation="MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRY VVDSLRERGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKV HMEVARASRRGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEK LSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVL VVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQ NVVARLQQLGGGEAIPLEGREENIVFEVPKELRVDIREVD" gene 27293..28207 /gene="rihC" /locus_tag="b0030" /gene_synonym="ECK0031; JW0028; yaaF" /db_xref="EcoGene:EG11082" /db_xref="GeneID:944796" CDS 27293..28207 /gene="rihC" /locus_tag="b0030" /gene_synonym="ECK0031; JW0028; yaaF" /EC_number="3.2.2.-" /GO_process="GO:0009226 - nucleotide-sugar biosynthetic process" /codon_start=1 /transl_table=11 /product="ribonucleoside hydrolase 3" /protein_id="NP_414571.1" /db_xref="GI:16128024" /db_xref="ASAP:ABE-0000109" /db_xref="UniProtKB/Swiss-Prot:P22564" /db_xref="EcoGene:EG11082" /db_xref="GeneID:944796" /translation="MRLPIFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEK TTRNALQLLHFWNAEIPLAQGAAVPLVRAPRDAASVHGESGMAGYDFVEHNRKPLGIP AFLAIRDALMRAPEPVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCTP NAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLSTLPQLNRTGKMLHALF SHYRSGSMQSGLRMHDLCAIAWLVRPDLFTLKPCFVAVETQGEFTSGTTVVDIDGCLG KPANVQVALDLDVKGFQQWVAEVLALAS" gene 28374..29195 /gene="dapB" /locus_tag="b0031" /gene_synonym="ECK0032; JW0029" /db_xref="EcoGene:EG10206" /db_xref="GeneID:944762" CDS 28374..29195 /gene="dapB" /locus_tag="b0031" /gene_synonym="ECK0032; JW0029" /EC_number="1.17.1.8" /function="enzyme; Amino acid biosynthesis: Lysine" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009089 - lysine biosynthetic process via diaminopimelate" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate reductase" /protein_id="NP_414572.1" /db_xref="GI:16128025" /db_xref="ASAP:ABE-0000112" /db_xref="UniProtKB/Swiss-Prot:P04036" /db_xref="EcoGene:EG10206" /db_xref="GeneID:944762" /translation="MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL LGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIG TTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHH RHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVG EHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNNL" gene 29651..30799 /gene="carA" /locus_tag="b0032" /gene_synonym="arg; cap; ECK0033; JW0030; pyrA" /db_xref="EcoGene:EG10134" /db_xref="GeneID:949025" CDS 29651..30799 /gene="carA" /locus_tag="b0032" /gene_synonym="arg; cap; ECK0033; JW0030; pyrA" /EC_number="6.3.5.5" /function="enzyme; Pyrimidine ribonucleotide biosynthesis" /experiment="N-terminus verified by Edman degradation: PMID 3894020,9298646,9740056" /GO_process="GO:0006526 - arginine biosynthetic process; GO:0006221 - pyrimidine nucleotide biosynthetic process" /codon_start=1 /transl_table=11 /product="carbamoyl phosphate synthetase small subunit, glutamine amidotransferase" /protein_id="NP_414573.1" /db_xref="GI:16128026" /db_xref="ASAP:ABE-0000118" /db_xref="UniProtKB/Swiss-Prot:P0A6F1" /db_xref="EcoGene:EG10134" /db_xref="GeneID:949025" /translation="MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILT DPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYL KRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAK EVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTI VPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLA LASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFD GTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK" gene 30817..34038 /gene="carB" /locus_tag="b0033" /gene_synonym="cap; ECK0034; JW0031; pyrA" /db_xref="EcoGene:EG10135" /db_xref="GeneID:944775" CDS 30817..34038 /gene="carB" /locus_tag="b0033" /gene_synonym="cap; ECK0034; JW0031; pyrA" /EC_number="6.3.5.5" /function="enzyme; Pyrimidine ribonucleotide biosynthesis" /GO_process="GO:0006526 - arginine biosynthetic process; GO:0006221 - pyrimidine nucleotide biosynthetic process" /codon_start=1 /transl_table=11 /product="carbamoyl-phosphate synthase large subunit" /protein_id="NP_414574.1" /db_xref="GI:16128027" /db_xref="ASAP:ABE-0000121" /db_xref="UniProtKB/Swiss-Prot:P00968" /db_xref="EcoGene:EG10135" /db_xref="GeneID:944775" /translation="MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRV ILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL ERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAA DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEM EVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIG VETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDE LMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQ ESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVD GVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAKLAGV REAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLG GGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLE DVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAV ERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQT AVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPA YTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKA TGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRST GEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELD ATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIR RSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK" gene 34300..34695 /gene="caiF" /locus_tag="b0034" /gene_synonym="ECK0035; JW0033" /db_xref="EcoGene:EG13451" /db_xref="GeneID:944795" CDS 34300..34695 /gene="caiF" /locus_tag="b0034" /gene_synonym="ECK0035; JW0033" /function="regulator; Central intermediary metabolism: Pool, multipurpose conversions" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0009310 - amine catabolic process; GO:0006350 - transcription" /note="transcriptional regulator of cai operon" /codon_start=1 /transl_table=11 /product="cai operon transcriptional activator" /protein_id="NP_414576.4" /db_xref="GI:90111079" /db_xref="ASAP:ABE-0000125" /db_xref="UniProtKB/Swiss-Prot:P0AE58" /db_xref="EcoGene:EG13451" /db_xref="GeneID:944795" /translation="MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNT LTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVR KTPRIPAVPLTELNREQKWQMMLSKSMRR" repeat_region 34727..34762 /note="REP3 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(34781..35371) /gene="caiE" /locus_tag="b0035" /gene_synonym="ECK0036; JW5004" /db_xref="EcoGene:EG12608" /db_xref="GeneID:948999" CDS complement(34781..35371) /gene="caiE" /locus_tag="b0035" /gene_synonym="ECK0036; JW5004" /function="putative enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_process="GO:0009310 - amine catabolic process; GO:0042413 - carnitine catabolic process" /note="possible synthesis of cofactor for carnitine racemase and dehydratase" /codon_start=1 /transl_table=11 /product="stimulator of CaiD and CaiB enzyme activities" /protein_id="NP_414577.2" /db_xref="GI:90111080" /db_xref="ASAP:ABE-0000128" /db_xref="UniProtKB/Swiss-Prot:P39206" /db_xref="EcoGene:EG12608" /db_xref="GeneID:948999" /translation="MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLR GDYGRLIVQAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCLIGRDALVGMNSV IMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRNVSDDELHWKRLNTKEYQ DLVGRCHVSLHETQPLRQMEENRPRLQGTTDVTPKR" gene complement(35377..36162) /gene="caiD" /locus_tag="b0036" /gene_synonym="ECK0037; JW0035; yaaL" /db_xref="EcoGene:EG11557" /db_xref="GeneID:948995" CDS complement(35377..36162) /gene="caiD" /locus_tag="b0036" /gene_synonym="ECK0037; JW0035; yaaL" /EC_number="4.2.1.-" /function="enzyme; Degradation of small molecules: Amines" /GO_process="GO:0009310 - amine catabolic process; GO:0042413 - carnitine catabolic process" /note="carnitine racemase" /codon_start=1 /transl_table=11 /product="carnitinyl-CoA dehydratase" /protein_id="NP_414578.2" /db_xref="GI:221800779" /db_xref="ASAP:ABE-0000130" /db_xref="UniProtKB/Swiss-Prot:P31551" /db_xref="EcoGene:EG11557" /db_xref="GeneID:948995" /translation="MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDD PQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVN GYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVM TGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMP VEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR" gene complement(36271..37824) /gene="caiC" /locus_tag="b0037" /gene_synonym="ECK0038; JW0036; yaaM" /db_xref="EcoGene:EG11558" /db_xref="GeneID:944886" CDS complement(36271..37824) /gene="caiC" /locus_tag="b0037" /gene_synonym="ECK0038; JW0036; yaaM" /EC_number="6.3.2.-" /function="putative enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009310 - amine catabolic process" /note="probable crotonobetaine/carnitine-CoA ligase" /codon_start=1 /transl_table=11 /product="putative crotonobetaine/carnitine-CoA ligase" /protein_id="NP_414579.4" /db_xref="GI:221800780" /db_xref="ASAP:ABE-0000133" /db_xref="UniProtKB/Swiss-Prot:P31552" /db_xref="EcoGene:EG11558" /db_xref="GeneID:944886" /translation="MDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELN QEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLCEESA WILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQ PATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYL TVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATVTECIPMMIRTL MVQPPSANDQQHRLREVMFYLNLSEQEKDAFCERFGVRLLTSYGMTETIVGIIGDRPG DKRRWPSIGRVGFCYEAEIRDDHNRPLPAGEIGEICIKGIPGKTIFKEYFLNPQATAK VLEADGWLHTGDTGYRDEEDFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIV VVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCS GKIIRKNLK" gene complement(37898..39115) /gene="caiB" /locus_tag="b0038" /gene_synonym="ECK0039; JW0037; yaaN" /db_xref="EcoGene:EG11559" /db_xref="GeneID:948997" CDS complement(37898..39115) /gene="caiB" /locus_tag="b0038" /gene_synonym="ECK0039; JW0037; yaaN" /EC_number="2.8.3.-" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /experiment="N-terminus verified by Edman degradation: PMID 8188598,10209289" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009310 - amine catabolic process; GO:0042413 - carnitine catabolic process" /note="l-carnitine dehydratase" /codon_start=1 /transl_table=11 /product="crotonobetainyl CoA:carnitine CoA transferase" /protein_id="NP_414580.1" /db_xref="GI:16128032" /db_xref="ASAP:ABE-0000136" /db_xref="UniProtKB/Swiss-Prot:P31572" /db_xref="EcoGene:EG11559" /db_xref="GeneID:948997" /translation="MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIE NVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFA RRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQP MPAFPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNG GEMCPRMSKGKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLGTPEIPE GTQLIHRIECPYGPLVEEKLDAWLATHTIAEVKERFAELNIACAKVLTVPELESNPQY VARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDI QELVSKGLAKVED" repeat_region 39151..39232 /note="REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(39244..40386) /gene="caiA" /locus_tag="b0039" /gene_synonym="ECK0040; JW0038; yaaO" /db_xref="EcoGene:EG11560" /db_xref="GeneID:949064" CDS complement(39244..40386) /gene="caiA" /locus_tag="b0039" /gene_synonym="ECK0040; JW0038; yaaO" /EC_number="1.3.99.-" /function="putative regulator; Central intermediary metabolism: Pool, multipurpose conversions" /experiment="N-terminus verified by Edman degradation: PMID 10209289" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009310 - amine catabolic process; GO:0042413 - carnitine catabolic process; GO:0006097 - glyoxylate cycle" /note="probable carnitine operon oxidoreductase" /codon_start=1 /transl_table=11 /product="crotonobetaine reductase subunit II, FAD-binding" /protein_id="NP_414581.1" /db_xref="GI:16128033" /db_xref="ASAP:ABE-0000139" /db_xref="UniProtKB/Swiss-Prot:P60584" /db_xref="EcoGene:EG11560" /db_xref="GeneID:949064" /translation="MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVK ALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGT QEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSA YTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELD EKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRF QLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQ VLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR" gene complement(40417..41931) /gene="caiT" /locus_tag="b0040" /gene_synonym="ECK0041; JW0039; yaaP" /db_xref="EcoGene:EG11561" /db_xref="GeneID:944765" CDS complement(40417..41931) /gene="caiT" /locus_tag="b0040" /gene_synonym="ECK0041; JW0039; yaaP" /function="putative transport; Central intermediary metabolism: Pool, multipurpose conversions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="probable carnitine transporter" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="NP_414582.1" /db_xref="GI:16128034" /db_xref="ASAP:ABE-0000141" /db_xref="UniProtKB/Swiss-Prot:P31553" /db_xref="EcoGene:EG11561" /db_xref="GeneID:944765" /translation="MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVF SYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSA AVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYF FFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTEC MQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIV SGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIF LARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVAR AIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRI GWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD" gene 42403..43173 /gene="fixA" /locus_tag="b0041" /gene_synonym="ECK0042; JW0040; yaaQ" /db_xref="EcoGene:EG11562" /db_xref="GeneID:947316" CDS 42403..43173 /gene="fixA" /locus_tag="b0041" /gene_synonym="ECK0042; JW0040; yaaQ" /function="putative enzyme; Energy metabolism, carbon: Electron transport" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="probable flavoprotein subunit, carnitine metabolism" /codon_start=1 /transl_table=11 /product="anaerobic carnitine reduction putative electron transfer flavoprotein subunit" /protein_id="NP_414583.2" /db_xref="GI:90111081" /db_xref="ASAP:ABE-0000145" /db_xref="UniProtKB/Swiss-Prot:P60566" /db_xref="EcoGene:EG11562" /db_xref="GeneID:947316" /translation="MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEA ACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTAS ALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVE RELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAA WSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI" gene 43188..44129 /gene="fixB" /locus_tag="b0042" /gene_synonym="ECK0043; JW0041; yaaR" /db_xref="EcoGene:EG11563" /db_xref="GeneID:948939" CDS 43188..44129 /gene="fixB" /locus_tag="b0042" /gene_synonym="ECK0043; JW0041; yaaR" /function="putative enzyme; Energy metabolism, carbon: Electron transport" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="probable flavoprotein subunit, carnitine metabolism" /codon_start=1 /transl_table=11 /product="putative electron transfer flavoprotein, NAD/FAD-binding domain and ETFP adenine nucleotide-binding domain-like protein" /protein_id="NP_414584.1" /db_xref="GI:16128036" /db_xref="ASAP:ABE-0000147" /db_xref="UniProtKB/Swiss-Prot:P31574" /db_xref="EcoGene:EG11563" /db_xref="GeneID:948939" /translation="MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQA IQLGANHVWKLNGKPDDRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYR LKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDAS RTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLC KAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQT IFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR" gene 44180..45466 /gene="fixC" /locus_tag="b0043" /gene_synonym="ECK0044; JW0042; yaaS" /db_xref="EcoGene:EG11564" /db_xref="GeneID:948958" CDS 44180..45466 /gene="fixC" /locus_tag="b0043" /gene_synonym="ECK0044; JW0042; yaaS" /function="putative carrier; Energy metabolism, carbon: Electron transport" /GO_process="GO:0042413 - carnitine catabolic process" /note="flavoprotein; electron transport" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_414585.1" /db_xref="GI:16128037" /db_xref="ASAP:ABE-0000149" /db_xref="UniProtKB/Swiss-Prot:P68644" /db_xref="EcoGene:EG11564" /db_xref="GeneID:948958" /translation="MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKN VTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRS YSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILAD GVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTD GLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEY SAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSA MKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFT IDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL" gene 45463..45750 /gene="fixX" /locus_tag="b0044" /gene_synonym="ECK0045; JW0043; yaaT" /db_xref="EcoGene:EG11565" /db_xref="GeneID:948590" CDS 45463..45750 /gene="fixX" /locus_tag="b0044" /gene_synonym="ECK0045; JW0043; yaaT" /function="putative carrier; Not classified" /GO_process="GO:0042413 - carnitine catabolic process" /note="putative ferredoxin" /codon_start=1 /transl_table=11 /product="putative 4Fe-4S ferredoxin-type protein" /protein_id="NP_414586.1" /db_xref="GI:16128038" /db_xref="ASAP:ABE-0000151" /db_xref="UniProtKB/Swiss-Prot:P68646" /db_xref="EcoGene:EG11565" /db_xref="GeneID:948590" /translation="MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACP AGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG" gene 45807..47138 /gene="yaaU" /locus_tag="b0045" /gene_synonym="ECK0046; JW0044; yabE" /db_xref="EcoGene:EG11566" /db_xref="GeneID:944766" CDS 45807..47138 /gene="yaaU" /locus_tag="b0045" /gene_synonym="ECK0046; JW0044; yabE" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative MFS sugar transporter; membrane protein" /protein_id="NP_414587.1" /db_xref="GI:16128039" /db_xref="ASAP:ABE-0000156" /db_xref="UniProtKB/Swiss-Prot:P31679" /db_xref="EcoGene:EG11566" /db_xref="GeneID:944766" /translation="MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQL TPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMF VSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADL VGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFG EPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLG VGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGI WLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPI FINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG" gene 47246..47776 /gene="kefF" /locus_tag="b0046" /gene_synonym="ECK0047; JW0045; yabF" /db_xref="EcoGene:EG11568" /db_xref="GeneID:944767" CDS 47246..47776 /gene="kefF" /locus_tag="b0046" /gene_synonym="ECK0047; JW0045; yabF" /function="putative enzyme; Not classified" /note="putative NAD(P)H oxidoreductase" /codon_start=1 /transl_table=11 /product="potassium-efflux system ancillary protein for KefC, glutathione-regulated; quinone oxidoreductase, FMN-dependent" /protein_id="NP_414588.1" /db_xref="GI:16128040" /db_xref="ASAP:ABE-0000159" /db_xref="UniProtKB/Swiss-Prot:P0A754" /db_xref="EcoGene:EG11568" /db_xref="GeneID:944767" /translation="MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNI DIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLW AVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQA RHYKQRLLEWQEAHHG" gene 47769..49631 /gene="kefC" /locus_tag="b0047" /gene_synonym="ECK0048; JW0046; trkC" /db_xref="EcoGene:EG10521" /db_xref="GeneID:944773" CDS 47769..49631 /gene="kefC" /locus_tag="b0047" /gene_synonym="ECK0048; JW0046; trkC" /function="transport; Transport of small molecules: Cations" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0015386 - potassium:hydrogen antiporter activity" /note="K+ efflux antiporter, glutathione-regulated" /codon_start=1 /transl_table=11 /product="potassium:proton antiporter" /protein_id="NP_414589.1" /db_xref="GI:16128041" /db_xref="ASAP:ABE-0000161" /db_xref="UniProtKB/Swiss-Prot:P03819" /db_xref="EcoGene:EG10521" /db_xref="GeneID:944773" /translation="MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPW GLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGCGALQMVICGGLLG LFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAI PLVAMIPLLATSSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREV FSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLF FIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQ GSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREA DEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDA TRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQ AGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTK ARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS" gene 49823..50302 /gene="folA" /locus_tag="b0048" /gene_synonym="ECK0049; JW0047; tmrA" /db_xref="EcoGene:EG10326" /db_xref="GeneID:944790" CDS 49823..50302 /gene="folA" /locus_tag="b0048" /gene_synonym="ECK0049; JW0047; tmrA" /EC_number="1.5.1.3" /function="enzyme; Biosynthesis of cofactors, carriers: Folic acid" /experiment="N-terminus verified by Edman degradation: PMID 350268,4610415" /GO_process="GO:0046656 - folic acid biosynthetic process" /note="dihydrofolate reductase type I; trimethoprim resistance" /codon_start=1 /transl_table=11 /product="dihydrofolate reductase" /protein_id="NP_414590.1" /db_xref="GI:16128042" /db_xref="ASAP:ABE-0000164" /db_xref="UniProtKB/Swiss-Prot:P0ABQ4" /db_xref="EcoGene:EG10326" /db_xref="GeneID:944790" /translation="MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGR HTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQ FLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR" repeat_region 50327..50363 /note="REP5 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(50380..51222) /gene="apaH" /locus_tag="b0049" /gene_synonym="cfcB; ECK0050; JW0048" /db_xref="EcoGene:EG10048" /db_xref="GeneID:944770" CDS complement(50380..51222) /gene="apaH" /locus_tag="b0049" /gene_synonym="cfcB; ECK0050; JW0048" /EC_number="3.6.1.41" /function="enzyme; Salvage of nucleosides and nucleotides" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="diadenosine tetraphosphatase" /protein_id="NP_414591.1" /db_xref="GI:16128043" /db_xref="ASAP:ABE-0000167" /db_xref="UniProtKB/Swiss-Prot:P05637" /db_xref="EcoGene:EG10048" /db_xref="GeneID:944770" /translation="MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPG SLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWL RRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMP NNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVA EEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLGE AAAS" gene complement(51229..51606) /gene="apaG" /locus_tag="b0050" /gene_synonym="corD; ECK0051; JW0049; temP" /db_xref="EcoGene:EG10047" /db_xref="GeneID:944772" CDS complement(51229..51606) /gene="apaG" /locus_tag="b0050" /gene_synonym="corD; ECK0051; JW0049; temP" /codon_start=1 /transl_table=11 /product="protein associated with Co2+ and Mg2+ efflux" /protein_id="NP_414592.1" /db_xref="GI:16128044" /db_xref="ASAP:ABE-0000169" /db_xref="UniProtKB/Swiss-Prot:P62672" /db_xref="EcoGene:EG10047" /db_xref="GeneID:944772" /translation="MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQ LLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMI DENGVPFSIDIPVFRLAVPTLIH" gene complement(51609..52430) /gene="rsmA" /locus_tag="b0051" /gene_synonym="ECK0052; JW0050; ksgA" /db_xref="EcoGene:EG10523" /db_xref="GeneID:944939" CDS complement(51609..52430) /gene="rsmA" /locus_tag="b0051" /gene_synonym="ECK0052; JW0050; ksgA" /EC_number="2.1.1.-" /function="enzyme; rRNA modification; drug/analog sensitivity" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0042493 - response to drug; GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="16S rRNA m(6)A1518, m(6)A1519 dimethyltransferase, SAM-dependent" /protein_id="NP_414593.1" /db_xref="GI:16128045" /db_xref="ASAP:ABE-0000175" /db_xref="UniProtKB/Swiss-Prot:P06992" /db_xref="EcoGene:EG10523" /db_xref="GeneID:944939" /translation="MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEI GPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE KMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRL SVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAF NQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPLQES" gene complement(52427..53416) /gene="pdxA" /locus_tag="b0052" /gene_synonym="ECK0053; JW0051" /db_xref="EcoGene:EG10691" /db_xref="GeneID:944919" CDS complement(52427..53416) /gene="pdxA" /locus_tag="b0052" /gene_synonym="ECK0053; JW0051" /EC_number="1.1.1.262" /function="enzyme; Biosynthesis of cofactors, carriers: Pyridoxine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0008615 - pyridoxine biosynthetic process" /note="pyridoxine biosynthesis" /codon_start=1 /transl_table=11 /product="4-hydroxy-L-threonine phosphate dehydrogenase, NAD-dependent" /protein_id="NP_414594.1" /db_xref="GI:16128046" /db_xref="ASAP:ABE-0000178" /db_xref="UniProtKB/Swiss-Prot:P19624" /db_xref="EcoGene:EG10691" /db_xref="GeneID:944919" /translation="MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLT NRAAMLGLPLTLRPYSPNSPAQPQTAGTLTLLPVALRAPVTAGQLAVENGHYVVETLA RACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRV ALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHM GTEEIDTIIPVLNELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQ GFGRGVNITLGLPFIRTSVDHGTALELAGRGKADVGSFITALNLAIKMIVNTQ" gene complement(53416..54702) /gene="surA" /locus_tag="b0053" /gene_synonym="ECK0054; JW0052" /db_xref="EcoGene:EG10985" /db_xref="GeneID:944812" CDS complement(53416..54702) /gene="surA" /locus_tag="b0053" /gene_synonym="ECK0054; JW0052" /EC_number="5.2.1.8" /function="phenotype; Not classified" /GO_component="GO:0009279 - cell outer membrane" /GO_process="GO:0006457 - protein folding" /note="survival protein" /codon_start=1 /transl_table=11 /product="peptidyl-prolyl cis-trans isomerase (PPIase)" /protein_id="NP_414595.1" /db_xref="GI:16128047" /db_xref="ASAP:ABE-0000180" /db_xref="UniProtKB/Swiss-Prot:P0ABZ6" /db_xref="EcoGene:EG10985" /db_xref="GeneID:944812" /translation="MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDG LMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIAN IAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESL AQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIA HSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGE SKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGS ANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAA QKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN" gene complement(54755..57109) /gene="lptD" /locus_tag="b0054" /gene_synonym="ECK0055; imp; JW0053; ostA; yabG" /db_xref="EcoGene:EG11569" /db_xref="GeneID:945011" CDS complement(54755..57109) /gene="lptD" /locus_tag="b0054" /gene_synonym="ECK0055; imp; JW0053; ostA; yabG" /function="phenotype; Adaptations, atypical conditions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="organic solvent tolerance" /codon_start=1 /transl_table=11 /product="LPS assembly OM complex LptDE, beta-barrel component" /protein_id="NP_414596.1" /db_xref="GI:16128048" /db_xref="ASAP:ABE-0000183" /db_xref="UniProtKB/Swiss-Prot:P31554" /db_xref="EcoGene:EG11569" /db_xref="GeneID:945011" /translation="MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQ GDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVR TVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGEN RYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQL PVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEF RYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKV SDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEP QLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTE AKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTL EPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRI YDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRG GIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGI SQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWD NDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL" gene 57364..58179 /gene="djlA" /locus_tag="b0055" /gene_synonym="ECK0056; JW0054; yabH" /db_xref="EcoGene:EG11570" /db_xref="GeneID:948992" CDS 57364..58179 /gene="djlA" /locus_tag="b0055" /gene_synonym="ECK0056; JW0054; yabH" /function="factor; Chaperones" /GO_process="GO:0006457 - protein folding" /codon_start=1 /transl_table=11 /product="membrane-anchored DnaK co-chaperone, DNA-binding protein" /protein_id="NP_414597.1" /db_xref="GI:16128049" /db_xref="ASAP:ABE-0000187" /db_xref="UniProtKB/Swiss-Prot:P31680" /db_xref="EcoGene:EG11570" /db_xref="GeneID:948992" /translation="MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWF ANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFR VGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEE LGISRAQFDQFLRMMQGGAQFGGGYQQQTGGGNWQQAQRGPTLEDACNVLGVKPTDDA TTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK" gene 58474..59279 /gene="yabP" /locus_tag="b4659" /gene_synonym="ECK0057; JW0055; yabQ" /pseudo /db_xref="EcoGene:EG12610" /db_xref="GeneID:944776" CDS join(58474..59052,59052..59279) /gene="yabP" /locus_tag="b4659" /gene_synonym="ECK0057; JW0055; yabQ" /note="pseudogene, pentapeptide repeats-containing" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0000192" /db_xref="ASAP:ABE-0000194" /db_xref="UniProtKB/Swiss-Prot:P39220" /db_xref="EcoGene:EG12610" /db_xref="GeneID:944776" gene complement(59687..60346) /gene="rluA" /locus_tag="b0058" /gene_synonym="ECK0059; JW0057; yabO" /db_xref="EcoGene:EG12609" /db_xref="GeneID:946262" CDS complement(59687..60346) /gene="rluA" /locus_tag="b0058" /gene_synonym="ECK0059; JW0057; yabO" /EC_number="4.2.1.70" /function="enzyme; rRNA modification; tRNA modification" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="dual specificity 23S rRNA pseudouridine(746), tRNA pseudouridine(32) synthase, SAM-dependent" /protein_id="NP_414600.1" /db_xref="GI:16128052" /db_xref="ASAP:ABE-0000196" /db_xref="UniProtKB/Swiss-Prot:P0AA37" /db_xref="EcoGene:EG12609" /db_xref="GeneID:946262" /translation="MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKD SVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWG HPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGR SHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD F" gene complement(60358..63264) /gene="rapA" /locus_tag="b0059" /gene_synonym="ECK0060; hepA; JW0058; yabA" /db_xref="EcoGene:EG11083" /db_xref="GeneID:948523" CDS complement(60358..63264) /gene="rapA" /locus_tag="b0059" /gene_synonym="ECK0060; hepA; JW0058; yabA" /EC_number="3.6.1.-" /function="putative enzyme; RNA synthesis, modification, DNA transcription" /GO_process="GO:0009451 - RNA modification" /note="probable ATP-dependent RNA helicase" /codon_start=1 /transl_table=11 /product="RNA polymerase remodeling/recycling factor ATPase; RNA polymerase-associated, ATP-dependent RNA translocase" /protein_id="NP_414601.1" /db_xref="GI:16128053" /db_xref="ASAP:ABE-0000198" /db_xref="UniProtKB/Swiss-Prot:P60240" /db_xref="EcoGene:EG11083" /db_xref="GeneID:948523" /translation="MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYA RSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFL DSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLN IAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVE MLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDL LVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPN RFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSD SEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKV SGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLV ICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIG SEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRW YHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLE QGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVL TPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGS STISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQV EFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKL SAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ" gene complement(63429..65780) /gene="polB" /locus_tag="b0060" /gene_synonym="dinA; ECK0061; JW0059" /db_xref="EcoGene:EG10747" /db_xref="GeneID:944779" CDS complement(63429..65780) /gene="polB" /locus_tag="b0060" /gene_synonym="dinA; ECK0061; JW0059" /EC_number="2.7.7.7" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006281 - DNA repair; GO:0006261 - DNA-dependent DNA replication; GO:0009314 - response to radiation; GO:0009432 - SOS response" /codon_start=1 /transl_table=11 /product="DNA polymerase II" /protein_id="NP_414602.1" /db_xref="GI:16128054" /db_xref="ASAP:ABE-0000202" /db_xref="UniProtKB/Swiss-Prot:P21189" /db_xref="EcoGene:EG10747" /db_xref="GeneID:944779" /translation="MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAF IPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVT VYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETT RHGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPD VIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIID GIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLK DCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLG EVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHS TEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTAC RFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIG RALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEG DKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGELDARL VYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPL DYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF" gene complement(65855..66550) /gene="araD" /locus_tag="b0061" /gene_synonym="ECK0062; JW0060" /db_xref="EcoGene:EG10055" /db_xref="GeneID:945294" CDS complement(65855..66550) /gene="araD" /locus_tag="b0061" /gene_synonym="ECK0062; JW0060" /EC_number="5.1.3.4" /function="enzyme; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 3549454,8520491" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="L-ribulose-5-phosphate 4-epimerase" /protein_id="NP_414603.1" /db_xref="GI:16128055" /db_xref="ASAP:ABE-0000209" /db_xref="UniProtKB/Swiss-Prot:P08203" /db_xref="EcoGene:EG10055" /db_xref="GeneID:945294" /translation="MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPS GVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHAT IWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDA AQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKH YLRKHGAKAYYGQ" repeat_region 66565..66812 /note="REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences" gene complement(66835..68337) /gene="araA" /locus_tag="b0062" /gene_synonym="ECK0063; JW0061" /db_xref="EcoGene:EG10052" /db_xref="GeneID:947511" CDS complement(66835..68337) /gene="araA" /locus_tag="b0062" /gene_synonym="ECK0063; JW0061" /EC_number="5.3.1.4" /function="enzyme; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 3549454" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="L-arabinose isomerase" /protein_id="NP_414604.1" /db_xref="GI:16128056" /db_xref="ASAP:ABE-0000221" /db_xref="UniProtKB/Swiss-Prot:P08202" /db_xref="EcoGene:EG10052" /db_xref="GeneID:947511" /translation="MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKL PCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQ FHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERI GSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVV NSISDGDVNALVDEYESCYTMTPATQIHGKKRQNVLEAARIELGMKRFLEQGGFHAFT TTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMED YTYHFEKGNDLVLGSHMLEVCPSIAAEEKPILDVQHLGIGGKDDPARLIFNTQTGPAI VASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHH TVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR" gene complement(68348..70048) /gene="araB" /locus_tag="b0063" /gene_synonym="ECK0064; JW0062" /db_xref="EcoGene:EG10053" /db_xref="GeneID:946017" CDS complement(68348..70048) /gene="araB" /locus_tag="b0063" /gene_synonym="ECK0064; JW0062" /EC_number="2.7.1.16" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="L-ribulokinase" /protein_id="NP_414605.1" /db_xref="GI:16128057" /db_xref="ASAP:ABE-0000223" /db_xref="UniProtKB/Swiss-Prot:P08204" /db_xref="EcoGene:EG10053" /db_xref="GeneID:946017" /translation="MAIAIGLDFGSDSVRALAVDCATGEEIATSVEWYPRWQKGQFCD APNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVL ALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKI LHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLP PASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCH MGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAG QSAFGDIYAWFGRVLGWPLEQLAAQHPELKTQINASQKQLLPALTEAWAKNPSLDHLP VVLDWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGI AVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIP SAQQKMASAVEKTLQPCSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVATL " gene 70387..71265 /gene="araC" /locus_tag="b0064" /gene_synonym="ECK0065; JW0063" /db_xref="EcoGene:EG10054" /db_xref="GeneID:944780" CDS 70387..71265 /gene="araC" /locus_tag="b0064" /gene_synonym="ECK0065; JW0063" /function="regulator; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006350 - transcription" /note="transcriptional regulator for ara operon" /codon_start=1 /transl_table=11 /product="ara regulon transcriptional activator; autorepressor" /protein_id="NP_414606.1" /db_xref="GI:16128058" /db_xref="ASAP:ABE-0000236" /db_xref="UniProtKB/Swiss-Prot:P0A9E0" /db_xref="EcoGene:EG10054" /db_xref="GeneID:944780" /translation="MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKG YILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRA YWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLL LRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ LGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEF RAGCEEKVNDVAVKLS" gene 71351..72115 /gene="yabI" /locus_tag="b0065" /gene_synonym="ECK0066; JW5005" /db_xref="EcoGene:EG11571" /db_xref="GeneID:944783" CDS 71351..72115 /gene="yabI" /locus_tag="b0065" /gene_synonym="ECK0066; JW5005" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="DedA family inner membrane protein" /protein_id="NP_414607.1" /db_xref="GI:16128059" /db_xref="ASAP:ABE-0000241" /db_xref="UniProtKB/Swiss-Prot:P30149" /db_xref="EcoGene:EG11571" /db_xref="GeneID:944783" /translation="MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAG LGALIGSGELSFWHAWLAGIIGCLMGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTE HALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGI LAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLL WLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGV" repeat_region 72136..72220 /note="REP7 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(72229..72927) /gene="thiQ" /locus_tag="b0066" /gene_synonym="ECK0067; JW0065; sfuC; yabJ" /db_xref="EcoGene:EG11572" /db_xref="GeneID:944785" CDS complement(72229..72927) /gene="thiQ" /locus_tag="b0066" /gene_synonym="ECK0067; JW0065; sfuC; yabJ" /function="transport; Transport of small molecules: Other" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009228 - thiamin biosynthetic process" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="thiamine/thiamine pyrophosphate ABC transporter ATPase" /protein_id="NP_414608.1" /db_xref="GI:16128060" /db_xref="ASAP:ABE-0000244" /db_xref="UniProtKB/Swiss-Prot:P31548" /db_xref="EcoGene:EG11572" /db_xref="GeneID:944785" /translation="MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNL IAGFLTPASGSLTIDGVDHTTMPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKL NAVQQGKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSAL DPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGMTNELL SGKASASALLGITG" gene complement(72911..74521) /gene="thiP" /locus_tag="b0067" /gene_synonym="ECK0068; JW0066; sfuB; yabK" /db_xref="EcoGene:EG11573" /db_xref="GeneID:944784" CDS complement(72911..74521) /gene="thiP" /locus_tag="b0067" /gene_synonym="ECK0068; JW0066; sfuB; yabK" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009228 - thiamin biosynthetic process" /codon_start=1 /transl_table=11 /product="thiamine/thiamine pyrophosphate ABC transporter permease" /protein_id="NP_414609.1" /db_xref="GI:16128061" /db_xref="ASAP:ABE-0000246" /db_xref="UniProtKB/Swiss-Prot:P31549" /db_xref="EcoGene:EG11573" /db_xref="GeneID:944784" /translation="MATRRQPLIPGWLIPGVSATTLVVAVALAAFLALWWNAPQDDWV AVWQDSYLWHVVRFSFWQAFLSALLSVIPAIFLARALYRRRFPGRLALLRLCAMTLIL PVLVAVFGILSVYGRQGWLATLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQ ALENIPGEQRQLAAQLGMRSWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLG GGPQATTIELAIYQALSYDYDPARAAMLALLQMVCCLGLVLLSQRLSKAIAPGTTLLQ GWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTS LRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQVLEMSGMLILAMPGIVLATGFFL LLNNTIGLPQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRL KVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGA VTALILLLLCFLLFTVIEKLPGRNVKTD" gene complement(74497..75480) /gene="thiB" /locus_tag="b0068" /gene_synonym="ECK0069; JW0067; sfuA; tbpA; yabL" /db_xref="EcoGene:EG11574" /db_xref="GeneID:946306" CDS complement(74497..75480) /gene="thiB" /locus_tag="b0068" /gene_synonym="ECK0069; JW0067; sfuA; tbpA; yabL" /function="transport; Transport of small molecules: Other" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0009228 - thiamin biosynthetic process" /note="thiamin-binding periplasmic protein; periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="thiamine/thiamine pyrophosphate/thiamine monophosphate ABC transporter periplasmic binding protein" /protein_id="NP_414610.1" /db_xref="GI:16128062" /db_xref="ASAP:ABE-0000249" /db_xref="UniProtKB/Swiss-Prot:P31550" /db_xref="EcoGene:EG11574" /db_xref="GeneID:946306" /translation="MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPVVKKAF EADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVA ADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRT STPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTS PAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIP TGNWMYPVANVTLPAGFEKLTKPATTLEFTPAEVAAQRQAWISEWQRAVSR" gene complement(75644..77299) /gene="sgrR" /locus_tag="b0069" /gene_synonym="ECK0070; JW0068; yabN" /db_xref="EcoGene:EG12094" /db_xref="GeneID:944788" CDS complement(75644..77299) /gene="sgrR" /locus_tag="b0069" /gene_synonym="ECK0070; JW0068; yabN" /function="transport; Not classified" /GO_component="GO:0042597 - periplasmic space" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="transcriptional DNA-binding transcriptional activator of sgrS sRNA" /protein_id="NP_414611.1" /db_xref="GI:16128063" /db_xref="ASAP:ABE-0000251" /db_xref="UniProtKB/Swiss-Prot:P33595" /db_xref="EcoGene:EG12094" /db_xref="GeneID:944788" /translation="MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLL NTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKAT VRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEE NGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIA DIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRN STNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEG CYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHART IKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLKIKEIDYDQWHTGEIES DIWLNSANFTLPLDFSVFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVA SKAMVPLLHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP" gene 77367..77593 /gene="sgrS" /locus_tag="b4577" /gene_synonym="ECK0071; JWR0259; ryaA" /db_xref="EcoGene:EG31149" /db_xref="GeneID:4056038" ncRNA 77367..77593 /ncRNA_class="antisense_RNA" /gene="sgrS" /locus_tag="b4577" /gene_synonym="ECK0071; JWR0259; ryaA" /product="sRNA antisense regulator destabilzes ptsG mRNA, Hfq-dependent; regulated by sgrR" /db_xref="ASAP:ABE-0285090" /db_xref="EcoGene:EG31149" /db_xref="GeneID:4056038" gene 77388..77519 /gene="sgrT" /locus_tag="b4662" /gene_synonym="ECK4477" /db_xref="EcoGene:EG14467" /db_xref="GeneID:7751624" CDS 77388..77519 /gene="sgrT" /locus_tag="b4662" /gene_synonym="ECK4477" /codon_start=1 /transl_table=11 /product="inhibitor of glucose uptake" /protein_id="YP_002791237.1" /db_xref="GI:226524697" /db_xref="UniProtKB/Swiss-Prot:C1P5Z7" /db_xref="EcoGene:EG14467" /db_xref="GeneID:7751624" /translation="MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES" gene 77621..78799 /gene="setA" /locus_tag="b0070" /gene_synonym="ECK0072; JW0069; yabM" /db_xref="EcoGene:EG11754" /db_xref="GeneID:944793" CDS 77621..78799 /gene="setA" /locus_tag="b0070" /gene_synonym="ECK0072; JW0069; yabM" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0015543 - lactose/glucose efflux transporter activity" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="broad specificity sugar efflux system" /protein_id="YP_025293.1" /db_xref="GI:49175994" /db_xref="ASAP:ABE-0000257" /db_xref="UniProtKB/Swiss-Prot:P31675" /db_xref="EcoGene:EG11754" /db_xref="GeneID:944793" /translation="MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREV GAQPFWIGLFYTVNAIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNALLFAFNRH YLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSSVMRAQLSLAWVIGPPL AFMLALNYGFTVMFSIAAGIFTLSLVLIAFMLPSVARVELPSENALSMQGGWQDSNVR MLFVASTLMWTCNTMYIIDMPLWISSELGLPDKLAGFLMGTAAGLEIPAMILAGYYVK RYGKRRMMVIAVAAGVLFYTGLIFFNSRMALMTLQLFNAVFIGIVAGIGMLWFQDLMP GRAGAATTLFTNSISTGVILAGVIQGAIAQSWGHFAVYWVIAVISVVALFLTAKVKDV " gene complement(78848..79453) /gene="leuD" /locus_tag="b0071" /gene_synonym="ECK0073; JW0070" /db_xref="EcoGene:EG11575" /db_xref="GeneID:945642" CDS complement(78848..79453) /gene="leuD" /locus_tag="b0071" /gene_synonym="ECK0073; JW0070" /EC_number="4.2.1.33" /function="enzyme; Amino acid biosynthesis: Leucine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009098 - leucine biosynthetic process" /note="isopropylmalate isomerase subunit" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydratase small subunit" /protein_id="NP_414613.1" /db_xref="GI:16128065" /db_xref="ASAP:ABE-0000259" /db_xref="UniProtKB/Swiss-Prot:P30126" /db_xref="EcoGene:EG11575" /db_xref="GeneID:945642" /translation="MAEKFIKHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLF NDWRFLDEKGQQPNPDFVLNFPQYQGASILLARENFGCGSSREHAPWALTDYGFKVVI APSFADIFYGNSFNNQLLPVKLSDAEVDELFALVKANPGIHFDVDLEAQEVKAGEKTY RFTIDAFRRHCMMNGLDSIGLTLQHDDAIAAYEAKQPAFMN" gene complement(79464..80864) /gene="leuC" /locus_tag="b0072" /gene_synonym="ECK0074; JW0071" /db_xref="EcoGene:EG11576" /db_xref="GeneID:945076" CDS complement(79464..80864) /gene="leuC" /locus_tag="b0072" /gene_synonym="ECK0074; JW0071" /EC_number="4.2.1.33" /function="enzyme; Amino acid biosynthesis: Leucine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009098 - leucine biosynthetic process" /note="3-isopropylmalate isomerase (dehydratase) subunit" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydratase large subunit" /protein_id="NP_414614.1" /db_xref="GI:16128066" /db_xref="ASAP:ABE-0000261" /db_xref="UniProtKB/Swiss-Prot:P0A6A6" /db_xref="EcoGene:EG11576" /db_xref="GeneID:945076" /translation="MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGL RAHGRPVRQPGKTFATMDHNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNH PYQGIVHVMGPEQGVTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQ GRAKTMKIEVQGKAAPGITAKDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMT LCNMAIEMGAKAGLVAPDETTFNYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTV VTLQAEEISPQVTWGTNPGQVISVNDNIPDPASFADPVERASAEKALAYMGLKPGIPL TEVAIDKVFIGSCTNSRIEDLRAAAEIAKGRKVAPGVQALVVPGSGPVKAQAEAEGLD KIFIEAGFEWRLPGCSMCLAMNNDRLNPGERCASTSNRNFEGRQGRGGRTHLVSPAMA AAAAVTGHFADIRNIK" gene complement(80867..81958) /gene="leuB" /locus_tag="b0073" /gene_synonym="ECK0075; JW5807" /db_xref="EcoGene:EG11577" /db_xref="GeneID:944798" CDS complement(80867..81958) /gene="leuB" /locus_tag="b0073" /gene_synonym="ECK0075; JW5807" /EC_number="1.1.1.85" /function="enzyme; Amino acid biosynthesis: Leucine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009098 - leucine biosynthetic process" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydrogenase, NAD(+)-dependent" /protein_id="NP_414615.4" /db_xref="GI:90111082" /db_xref="ASAP:ABE-0000265" /db_xref="UniProtKB/Swiss-Prot:P30125" /db_xref="EcoGene:EG11577" /db_xref="GeneID:944798" /translation="MSKNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYD VGGAAIDNHGQPLPPATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHF KLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK AFDTEVYHRFEIERIARIAFESARKRRHKVTSIDKANVLQSSILWREIVNEIATEYPD VELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG FGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDADDAACAIERAINRALEEGI RTGDLARGAAAVSTDEMGDIIARYVAEGV" gene complement(81958..83529) /gene="leuA" /locus_tag="b0074" /gene_synonym="ECK0076; JW0073" /db_xref="EcoGene:EG11226" /db_xref="GeneID:947465" CDS complement(81958..83529) /gene="leuA" /locus_tag="b0074" /gene_synonym="ECK0076; JW0073" /EC_number="2.3.3.13" /function="enzyme; Amino acid biosynthesis: Leucine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009098 - leucine biosynthetic process" /codon_start=1 /transl_table=11 /product="2-isopropylmalate synthase" /protein_id="NP_414616.1" /db_xref="GI:16128068" /db_xref="ASAP:ABE-0000267" /db_xref="UniProtKB/Swiss-Prot:P09151" /db_xref="EcoGene:EG11226" /db_xref="GeneID:947465" /translation="MSQQVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVME VGFPVSSPGDFESVQTIARQVKNSRVCALARCVEKDIDVAAESLKVAEAFRIHTFIAT SPMHIATKLRSTLDEVIERAIYMVKRARNYTDDVEFSCEDAGRTPIADLARVVEAAIN AGATTINIPDTVGYTMPFEFAGIISGLYERVPNIDKAIISVHTHDDLGLAVGNSLAAV HAGARQVEGAMNGIGERAGNCSLEEVIMAIKVRKDILNVHTAINHQEIWRTSQLVSQI CNMPIPANKAIVGSGAFAHSSGIHQDGVLKNRENYEIMTPESIGLNQIQLNLTSRSGR AAVKHRMDEMGYKESEYNLDNLYDAFLKLADKKGQVFDYDLEALAFIGKQQEEPEHFR LDYFSVQSGSNDIATAAVKLACGEEVKAEAANGNGPVDAVYQAINRITEYNVELVKYS LTAKGHGKDALGQVDIVANYNGRRFHGVGLATDIVESSAKAMVHVLNNIWRAAEVEKE LQRKAQHNENNKETV" gene complement(83622..83708) /gene="leuL" /locus_tag="b0075" /gene_synonym="ECK0077; JW0074; leuLP" /db_xref="EcoGene:EG11280" /db_xref="GeneID:946072" CDS complement(83622..83708) /gene="leuL" /locus_tag="b0075" /gene_synonym="ECK0077; JW0074; leuLP" /function="leader; Amino acid biosynthesis: Leucine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009098 - leucine biosynthetic process" /codon_start=1 /transl_table=11 /product="leu operon leader peptide" /protein_id="NP_414617.1" /db_xref="GI:16128069" /db_xref="ASAP:ABE-0000269" /db_xref="UniProtKB/Swiss-Prot:P0AD79" /db_xref="EcoGene:EG11280" /db_xref="GeneID:946072" /translation="MTHIVRFIGLLLLNASSLRGRRVSGIQH" gene 84368..85312 /gene="leuO" /locus_tag="b0076" /gene_synonym="ECK0078; JW0075" /db_xref="EcoGene:EG10531" /db_xref="GeneID:949034" CDS 84368..85312 /gene="leuO" /locus_tag="b0076" /gene_synonym="ECK0078; JW0075" /function="putative regulator; Amino acid biosynthesis: Leucine" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0009098 - leucine biosynthetic process; GO:0006350 - transcription" /note="probable transcriptional activator for leuABCD operon" /codon_start=1 /transl_table=11 /product="global transcription factor" /protein_id="NP_414618.4" /db_xref="GI:90111083" /db_xref="ASAP:ABE-0000280" /db_xref="UniProtKB/Swiss-Prot:P10151" /db_xref="EcoGene:EG10531" /db_xref="GeneID:949034" /translation="MPEVQTDHPETAELSKPQLRMVDLNLLTVFDAVMQEQNITRAAH VLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPG SGFEPASSERVFHLCVCSPLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQ ETEFVISYEDFHRPEFTSVPLFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAVSLDR FASFSQPWYDTVDKQASIAYQGMAMMSVLSVVSQTHLVAIAPRWLAEEFAESLELQVL PLPLKQNSRTCYLSWHEAAGRDKGHQWMEEQLVSICKR" gene 85630..87354 /gene="ilvI" /locus_tag="b0077" /gene_synonym="ECK0079; JW0076" /db_xref="EcoGene:EG10500" /db_xref="GeneID:948793" CDS 85630..87354 /gene="ilvI" /locus_tag="b0077" /gene_synonym="ECK0079; JW0076" /EC_number="2.2.1.6" /function="enzyme; Amino acid biosynthesis: Isoleucine, Valine" /experiment="N-terminus verified by Edman degradation: PMID 3881131,9298646" /note="acetolactate synthase III, valine sensitive, large subunit" /codon_start=1 /transl_table=11 /product="acetolactate synthase 3 large subunit" /protein_id="YP_025294.2" /db_xref="GI:90111084" /db_xref="ASAP:ABE-0000290" /db_xref="UniProtKB/Swiss-Prot:P00893" /db_xref="EcoGene:EG10500" /db_xref="GeneID:948793" /translation="MEMLSGAEMVVRSLIDQGVKQVFGYPGGAVLDIYDALHTVGGID HVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQ VATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVD LPKDILNPANKLPYVWPESVSMRSYNPTTTGHKGQIKRALQTLVAAKKPVVYVGGGAI TAGCHQQLKETVEALNLPVVCSLMGLGAFPATHRQALGMLGMHGTYEANMTMHNADVI FAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSISKTVTADIPIVGDARQVLEQMLEL LSQESAHQPLDEIRDWWQQIEQWRARQCLKYDTHSEKIKPQAVIETLWRLTKGDAYVT SDVGQHQMFAALYYPFDKPRRWINSGGLGTMGFGLPAALGVKMALPEETVVCVTGDGS IQMNIQELSTALQYELPVLVVNLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLA EAYGHVGIQISHPHELESKLSEALEQVRNNRLVFVDVTVDGSEHVYPMQIRGGGMDEM WLSKTERT" gene 87357..87848 /gene="ilvH" /locus_tag="b0078" /gene_synonym="brnP; ECK0080; JW0077" /db_xref="EcoGene:EG10499" /db_xref="GeneID:947267" CDS 87357..87848 /gene="ilvH" /locus_tag="b0078" /gene_synonym="brnP; ECK0080; JW0077" /EC_number="2.2.1.6" /function="enzyme; Amino acid biosynthesis: Isoleucine, Valine" /note="acetolactate synthase III, valine sensitive, small subunit" /codon_start=1 /transl_table=11 /product="acetolactate synthase 3, small subunit, valine-sensitive" /protein_id="NP_414620.1" /db_xref="GI:16128071" /db_xref="ASAP:ABE-0000294" /db_xref="UniProtKB/Swiss-Prot:P00894" /db_xref="EcoGene:EG10499" /db_xref="GeneID:947267" /translation="MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLS RMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVK RNTEIFRGQIIDVTPSLYTVQLAGTSGKLDAFLASIRDVAKIVEVARSGVVGLSRGDK IMR" gene 88028..89032 /gene="cra" /locus_tag="b0080" /gene_synonym="ECK0081; fruC; fruR; fruS?; JW0078; serR?; shl" /db_xref="EcoGene:EG10338" /db_xref="GeneID:944804" CDS 88028..89032 /gene="cra" /locus_tag="b0080" /gene_synonym="ECK0081; fruC; fruR; fruS?; JW0078; serR?; shl" /function="regulator; Energy metabolism, carbon: Glycolysis" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006096 - glycolysis; GO:0006350 - transcription" /note="transcriptional repressor of fru operon and others" /codon_start=1 /transl_table=11 /product="transcriptional repressor-activator for carbon metabolism" /protein_id="NP_414622.1" /db_xref="GI:16128073" /db_xref="ASAP:ABE-0000299" /db_xref="UniProtKB/Swiss-Prot:P0ACP1" /db_xref="EcoGene:EG10338" /db_xref="GeneID:944804" /translation="MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVRE HNYHPNAVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQ PDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVV GADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYAN SYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDN ELLDFLQCPVLAVAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS " gene 89634..90092 /gene="mraZ" /locus_tag="b0081" /gene_synonym="ECK0082; JW0079; yabB" /db_xref="EcoGene:EG11084" /db_xref="GeneID:944810" CDS 89634..90092 /gene="mraZ" /locus_tag="b0081" /gene_synonym="ECK0082; JW0079; yabB" /codon_start=1 /transl_table=11 /product="RsmH methytransferase inhibitor" /protein_id="NP_414623.1" /db_xref="GI:16128074" /db_xref="ASAP:ABE-0000302" /db_xref="UniProtKB/Swiss-Prot:P22186" /db_xref="EcoGene:EG11084" /db_xref="GeneID:944810" /translation="MFRGATLVNLDSKGRLSVPTRYREQLLENAAGQMVCTIDIYHPC LLLYPLPEWEIIEQKLSRLSSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHA GLTKEVMLVGQFNKFELWDETTWHQQVKEDIDAEQLATGDLSERLQDLSL" gene 90094..91035 /gene="rsmH" /locus_tag="b0082" /gene_synonym="ECK0083; JW0080; mraW; yabC" /db_xref="EcoGene:EG11085" /db_xref="GeneID:944806" CDS 90094..91035 /gene="rsmH" /locus_tag="b0082" /gene_synonym="ECK0083; JW0080; mraW; yabC" /EC_number="2.1.1.-" /function="enzyme; rRNA modification" /experiment="N-terminus verified by Edman degradation: PMID 10572301" /GO_process="GO:0042158 - lipoprotein biosynthetic process" /note="putative apolipoprotein" /codon_start=1 /transl_table=11 /product="16S rRNA m(4)C1402 methyltransferase, SAM-dependent" /protein_id="NP_414624.1" /db_xref="GI:16128075" /db_xref="ASAP:ABE-0000304" /db_xref="UniProtKB/Swiss-Prot:P60390" /db_xref="EcoGene:EG11085" /db_xref="GeneID:944806" /translation="MMENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQ LGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDL GVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERF AKRIARAIVERNREQPMTRTKELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEE IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKL GGRQLRALGKLMPGEEEVAENPRARSSVLRIAERTNA" gene 91032..91397 /gene="ftsL" /locus_tag="b0083" /gene_synonym="ECK0084; JW0081; mraR; yabD" /db_xref="EcoGene:EG11086" /db_xref="GeneID:944803" CDS 91032..91397 /gene="ftsL" /locus_tag="b0083" /gene_synonym="ECK0084; JW0081; mraR; yabD" /function="phenotype; Cell division" /note="cell division protein; ingrowth of wall at septum" /codon_start=1 /transl_table=11 /product="membrane bound cell division leucine zipper septum protein" /protein_id="NP_414625.1" /db_xref="GI:16128076" /db_xref="ASAP:ABE-0000306" /db_xref="UniProtKB/Swiss-Prot:P0AEN4" /db_xref="EcoGene:EG11086" /db_xref="GeneID:944803" /translation="MISRVTEALSKVKGSMGSHERHALPGVIGDDLLRFGKLPLCLFI CIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIAT EKLQMQHVDPSQENIVVQK" gene 91413..93179 /gene="ftsI" /locus_tag="b0084" /gene_synonym="ECK0085; JW0082; pbpB; sep" /db_xref="EcoGene:EG10341" /db_xref="GeneID:944799" CDS 91413..93179 /gene="ftsI" /locus_tag="b0084" /gene_synonym="ECK0085; JW0082; pbpB; sep" /function="enzyme; Cell division" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process; GO:0042493 - response to drug" /note="septum formation; penicillin-binding protein 3; peptidoglycan synthetase" /codon_start=1 /transl_table=11 /product="transpeptidase involved in septal peptidoglycan synthesis; penicillin-binding protein 3" /protein_id="NP_414626.1" /db_xref="GI:16128077" /db_xref="ASAP:ABE-0000309" /db_xref="UniProtKB/Swiss-Prot:P0AD68" /db_xref="EcoGene:EG10341" /db_xref="GeneID:944799" /translation="MKAAAKTQKPKRQEEHANFISWRFALLCGCILLALAFLLGRVAW LQVISPDMLVKEGDMRSLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAG GISVGDRWKALANALNIPLDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIH LREESRRYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVI EDISSTDSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMA NSPSYNPNNLSGTPKEAMRNRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPY RINGHEIKDVARYSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLG LVGERSGLYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVD PPVPGERVFPESIVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRYI NKYIAYTAGVAPASQPRFALVVVINDPQAGKYYGGAVSAPVFGAIMGGVLRTMNIEPD ALTTGDKNEFVINQGEGTGGRS" gene 93166..94653 /gene="murE" /locus_tag="b0085" /gene_synonym="ECK0086; JW0083" /db_xref="EcoGene:EG10621" /db_xref="GeneID:944791" CDS 93166..94653 /gene="murE" /locus_tag="b0085" /gene_synonym="ECK0086; JW0083" /EC_number="6.3.2.13" /function="enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate:meso- diaminopimelate ligase" /protein_id="NP_414627.1" /db_xref="GI:16128078" /db_xref="ASAP:ABE-0000311" /db_xref="UniProtKB/Swiss-Prot:P22188" /db_xref="EcoGene:EG10621" /db_xref="GeneID:944791" /translation="MADRNLRDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGH QADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFY HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTG SAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDM EHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKA TEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAA RLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDK GKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTC AVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGVIA" gene 94650..96008 /gene="murF" /locus_tag="b0086" /gene_synonym="ECK0087; JW0084; mra" /db_xref="EcoGene:EG10622" /db_xref="GeneID:944813" CDS 94650..96008 /gene="murF" /locus_tag="b0086" /gene_synonym="ECK0087; JW0084; mra" /EC_number="6.3.2.10" /function="enzyme; Murein sacculus, peptidoglycan" /experiment="N-terminus verified by Edman degradation: PMID 2186811" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process; GO:0000270 - peptidoglycan metabolic process" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D- alanine ligase" /protein_id="NP_414628.1" /db_xref="GI:16128079" /db_xref="ASAP:ABE-0000313" /db_xref="UniProtKB/Swiss-Prot:P11880" /db_xref="EcoGene:EG10622" /db_xref="GeneID:944813" /translation="MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALK GERFDAHDFADQAKAGGAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQVPARV VALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELG ANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMN ADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYN ANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGK QSHAISTASGVGEHFADKTALITRLKLLIAEQQVITILVKGSRSAAMEEVVRALQENG TC" gene 96002..97084 /gene="mraY" /locus_tag="b0087" /gene_synonym="ECK0088; JW0085; murX" /db_xref="EcoGene:EG10604" /db_xref="GeneID:944814" CDS 96002..97084 /gene="mraY" /locus_tag="b0087" /gene_synonym="ECK0088; JW0085; murX" /EC_number="2.7.8.13" /function="enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /note="phospho-N-acetylmuramoyl-pentapeptide transferase?" /codon_start=1 /transl_table=11 /product="phospho-N-acetylmuramoyl-pentapeptide transferase" /protein_id="NP_414629.1" /db_xref="GI:16128080" /db_xref="ASAP:ABE-0000316" /db_xref="UniProtKB/Swiss-Prot:P0A6W3" /db_xref="EcoGene:EG10604" /db_xref="GeneID:944814" /translation="MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRM IAHLQKLSFGQVVRNDGPESHFSKRGTPTMGGIMILTAIVISVLLWAYPSNPYVWCVL VVLVGYGVIGFVDDYRKVVRKDTKGLIARWKYFWMSVIALGVAFALYLAGKDTPATQL VVPFFKDVMPQLGLFYILLAYFVIVGTGNAVNLTDGLDGLAIMPTVFVAGGFALVAWA TGNMNFASYLHIPYLRHAGELVIVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGA LGIIAVLLRQEFLLVIMGGVFVVETLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWP EPRVIVRFWIISLMLVLIGLATLKVR" gene 97087..98403 /gene="murD" /locus_tag="b0088" /gene_synonym="ECK0089; JW0086" /db_xref="EcoGene:EG10620" /db_xref="GeneID:944818" CDS 97087..98403 /gene="murD" /locus_tag="b0088" /gene_synonym="ECK0089; JW0086" /EC_number="6.3.2.9" /function="enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase" /protein_id="NP_414630.1" /db_xref="GI:16128081" /db_xref="ASAP:ABE-0000318" /db_xref="UniProtKB/Swiss-Prot:P14900" /db_xref="EcoGene:EG10620" /db_xref="GeneID:944818" /translation="MADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL DKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCRE AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDECELYVLELS SFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALT MPIRGADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAA LALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGL HVDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVAEQTETME QAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKELG" gene 98403..99647 /gene="ftsW" /locus_tag="b0089" /gene_synonym="ECK0090; JW0087" /db_xref="EcoGene:EG10344" /db_xref="GeneID:946322" CDS 98403..99647 /gene="ftsW" /locus_tag="b0089" /gene_synonym="ECK0090; JW0087" /function="membrane; Cell division" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="cell division; membrane protein involved in shape determination" /codon_start=1 /transl_table=11 /product="putative lipid II flippase; integral membrane protein; FtsZ ring stabilizer" /protein_id="NP_414631.1" /db_xref="GI:16128082" /db_xref="ASAP:ABE-0000320" /db_xref="UniProtKB/Swiss-Prot:P0ABG4" /db_xref="EcoGene:EG10344" /db_xref="GeneID:946322" /translation="MRLSLPRLKMPRLPGFSILVWISTALKGWVMGSREKDTDSLIMY DRTLLWLTFGLAAIGFIMVTSASMPIGQRLTNDPFFFAKRDGVYLILAFILAIITLRL PMEFWQRYSATMLLGSIILLMIVLVVGSSVKGASRWIDLGLLRIQPAELTKLSLFCYI ANYLVRKGDEVRNNLRGFLKPMGVILVLAVLLLAQPDLGTVVVLFVTTLAMLFLAGAK LWQFIAIIGMGISAVVLLILAEPYRIRRVTAFWNPWEDPFGSGYQLTQSLMAFGRGEL WGQGLGNSVQKLEYLPEAHTDFIFAIIGEELGYVGVVLALLMVFFVAFRAMSIGRKAL EIDHRFSGFLACSIGIWFSFQALVNVGAAAGMLPTKGLTLPLISYGGSSLLIMSTAIM MLLRIDYETRLEKAQAFVRGSR" gene 99644..100711 /gene="murG" /locus_tag="b0090" /gene_synonym="ECK0091; JW0088" /db_xref="EcoGene:EG10623" /db_xref="GeneID:946321" CDS 99644..100711 /gene="murG" /locus_tag="b0090" /gene_synonym="ECK0091; JW0088" /EC_number="2.4.1.227" /function="enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /codon_start=1 /transl_table=11 /product="N-acetylglucosaminyl transferase" /protein_id="NP_414632.1" /db_xref="GI:16128083" /db_xref="ASAP:ABE-0000322" /db_xref="UniProtKB/Swiss-Prot:P17443" /db_xref="EcoGene:EG10623" /db_xref="GeneID:946321" /translation="MSGQGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADR MEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGM GGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGN PVRTDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQS GKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPA LFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERAR AASIPDATERVANEVSRVARA" gene 100765..102240 /gene="murC" /locus_tag="b0091" /gene_synonym="ECK0092; JW0089" /db_xref="EcoGene:EG10619" /db_xref="GeneID:946153" CDS 100765..102240 /gene="murC" /locus_tag="b0091" /gene_synonym="ECK0092; JW0089" /EC_number="6.3.2.8" /function="enzyme; Murein sacculus, peptidoglycan" /experiment="N-terminus verified by Edman degradation: PMID 7601127" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramate:L-alanine ligase" /protein_id="NP_414633.1" /db_xref="GI:16128084" /db_xref="ASAP:ABE-0000324" /db_xref="UniProtKB/Swiss-Prot:P17952" /db_xref="EcoGene:EG10619" /db_xref="GeneID:946153" /translation="MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGY QISGSDLAPNPVTQQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEAR IPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAG VHARLGHGRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFL HNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLR QDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEF PLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYD DFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRGRGKIDPILVPDPARVAEML APVLTGNDLILVQGAGNIGKIARSLAEIKLKPQTPEEEQHD" gene 102233..103153 /gene="ddlB" /locus_tag="b0092" /gene_synonym="ddl; ECK0093; JW0090" /db_xref="EcoGene:EG10214" /db_xref="GeneID:946324" CDS 102233..103153 /gene="ddlB" /locus_tag="b0092" /gene_synonym="ddl; ECK0093; JW0090" /EC_number="6.3.2.4" /function="enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /note="D-alanine-D-alanine ligase B, affects cell division" /codon_start=1 /transl_table=11 /product="D-alanine:D-alanine ligase" /protein_id="NP_414634.1" /db_xref="GI:16128085" /db_xref="ASAP:ABE-0000326" /db_xref="UniProtKB/Swiss-Prot:P07862" /db_xref="EcoGene:EG10214" /db_xref="GeneID:946324" /translation="MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE VDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL LWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE NALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLS DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPG MTSHSLVPMAARQAGMSFSQLVVRILELAD" gene 103155..103985 /gene="ftsQ" /locus_tag="b0093" /gene_synonym="ECK0094; JW0091" /db_xref="EcoGene:EG10342" /db_xref="GeneID:944823" CDS 103155..103985 /gene="ftsQ" /locus_tag="b0093" /gene_synonym="ECK0094; JW0091" /function="phenotype; Cell division" /GO_component="GO:0019866 - organelle inner membrane" /note="cell division protein; ingrowth of wall at septum" /codon_start=1 /transl_table=11 /product="divisome assembly protein, membrane anchored protein involved in growth of wall at septum" /protein_id="NP_414635.1" /db_xref="GI:16128086" /db_xref="ASAP:ABE-0000329" /db_xref="UniProtKB/Swiss-Prot:P06136" /db_xref="EcoGene:EG10342" /db_xref="GeneID:944823" /translation="MSQAALNTRNSEEEVSSRRNNGTRLAGILFLLTVLTTVLVSGWV VLGWMEDAQRLPLSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQR LPWIKQVSVRKQWPDELKIHLVEYVPIARWNDQHMVDAEGNTFSVPPERTSKQVLPML YGPEGSANEVLQGYREMGQMLAKDRFTLKEAAMTARRSWQLTLNNDIKLNLGRGDTMK RLARFVELYPVLQQQAQTDGKRISYVDLRYDSGAAVGWAPLPPEESTQQQNQAQAEQQ " gene 103982..105244 /gene="ftsA" /locus_tag="b0094" /gene_synonym="divA; ECK0095; JW0092" /db_xref="EcoGene:EG10339" /db_xref="GeneID:944778" CDS 103982..105244 /gene="ftsA" /locus_tag="b0094" /gene_synonym="divA; ECK0095; JW0092" /function="phenotype; Cell division" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="ATP-binding cell division protein, septation process, complexes with FtsZ, associated with junctions of inner and outer membranes" /codon_start=1 /transl_table=11 /product="ATP-binding cell division FtsK recruitment protein" /protein_id="NP_414636.1" /db_xref="GI:16128087" /db_xref="ASAP:ABE-0000331" /db_xref="UniProtKB/Swiss-Prot:P0ABH0" /db_xref="EcoGene:EG10339" /db_xref="GeneID:944778" /translation="MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSR GMDKGGVNDLESVVKCVQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEE EVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHL ITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYSVLTEDERELGVCVVDIGGGTMDI AVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVE VPSVGGRPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEKLRQQGVKHHLAAGIVL TGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKESHLN GEAEVEKRVTASVGSWIKRLNSWLRKEF" gene 105305..106456 /gene="ftsZ" /locus_tag="b0095" /gene_synonym="ECK0096; JW0093; sfiB; sulB" /db_xref="EcoGene:EG10347" /db_xref="GeneID:944786" CDS 105305..106456 /gene="ftsZ" /locus_tag="b0095" /gene_synonym="ECK0096; JW0093; sfiB; sulB" /function="enzyme; Cell division" /experiment="N-terminus verified by Edman degradation: PMID 9298646" /GO_component="GO:0005737 - cytoplasm" /note="cell division; forms circumferential ring; tubulin-like GTP-binding protein and GTPase" /codon_start=1 /transl_table=11 /product="GTP-binding tubulin-like cell division protein" /protein_id="NP_414637.1" /db_xref="GI:16128088" /db_xref="ASAP:ABE-0000333" /db_xref="UniProtKB/Swiss-Prot:P0A9A6" /db_xref="EcoGene:EG10347" /db_xref="GeneID:944786" /translation="MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNT DAQALRKTAVGQTIQIGSGITKGLGAGANPEVGRNAADEDRDALRAALEGADMVFIAA GMGGGTGTGAAPVVAEVAKDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSL ITIPNDKLLKVLGRGISLLDAFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMS EMGYAMMGSGVASGEDRAEEAAEMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFE TVGNTIRAFASDNATVVIGTSLDPDMNDELRVTVVATGIGMDKRPEITLVTNKQVQQP VMDRYQQHGMAPLTQEQKPVAKVVNDNAPQTAKEPDYLDIPAFLRKQAD" gene 106557..107474 /gene="lpxC" /locus_tag="b0096" /gene_synonym="asmB; ECK0097; envA; JW0094" /db_xref="EcoGene:EG10265" /db_xref="GeneID:944816" CDS 106557..107474 /gene="lpxC" /locus_tag="b0096" /gene_synonym="asmB; ECK0097; envA; JW0094" /EC_number="3.5.1.-" /function="enzyme; Surface polysaccharides & antigens" /experiment="N-terminus verified by Edman degradation: PMID 8530464" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009245 - lipid A biosynthetic process" /note="UDP-3-O-acyl N-acetylglucosamine deacetylase; lipid A biosynthesis" /codon_start=1 /transl_table=11 /product="UDP-3-O-acyl N-acetylglucosamine deacetylase" /protein_id="NP_414638.1" /db_xref="GI:16128089" /db_xref="ASAP:ABE-0000336" /db_xref="UniProtKB/Swiss-Prot:P0A725" /db_xref="EcoGene:EG10265" /db_xref="GeneID:944816" /translation="MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDL NPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIP IMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTID FNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVV DDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVL AKQEAWEYVTFQDDAELPLAFKAPSAVLA" gene 107705..108217 /gene="secM" /locus_tag="b0097" /gene_synonym="ECK0098; JW5007; srrA; yacA" /db_xref="EcoGene:EG11087" /db_xref="GeneID:944831" CDS 107705..108217 /gene="secM" /locus_tag="b0097" /gene_synonym="ECK0098; JW5007; srrA; yacA" /codon_start=1 /transl_table=11 /product="regulator of secA translation" /protein_id="NP_414639.2" /db_xref="GI:90111085" /db_xref="ASAP:ABE-0000340" /db_xref="UniProtKB/Swiss-Prot:P62395" /db_xref="EcoGene:EG11087" /db_xref="GeneID:944831" /translation="MSGILTRWRQFGKRYFWPHLLLGMVAASLGLPALSNAAEPNAPA KATTRNHEPSAKVNFGQLALLEANTRRPNSNYSVDYWHQHAIRTVIRHLSFAMAPQTL PVAEESLPLQAQHLALLDTLSALLTQEGTPSEKGYRIDYAHFTPQAKFSTPVWISQAQ GIRAGPQRLT" gene 108279..110984 /gene="secA" /locus_tag="b0098" /gene_synonym="azi; ECK0099; JW0096; pea; prlD" /db_xref="EcoGene:EG10936" /db_xref="GeneID:944821" CDS 108279..110984 /gene="secA" /locus_tag="b0098" /gene_synonym="azi; ECK0099; JW0096; pea; prlD" /function="transport; Protein, peptide secretion" /experiment="N-terminus verified by Edman degradation: PMID 2841285" /GO_component="GO:0005737 - cytoplasm" /note="preprotein translocase; secretion protein" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit, ATPase" /protein_id="NP_414640.1" /db_xref="GI:16128091" /db_xref="ASAP:ABE-0000343" /db_xref="UniProtKB/Swiss-Prot:P10408" /db_xref="EcoGene:EG10936" /db_xref="GeneID:944821" /translation="MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELK GKTAEFRARLEKGEVLENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEM RTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPG MPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDE ARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTE RGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVI IVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTG TADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQ PVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAAVTIATNMAG RGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRR IDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVT KAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDVSDVSETINSIRED VFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIAEWLDKEPELHEETLRERIL AQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKD PKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEELEQQRRMEAERLAQMQQ LSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHGRLQ" gene 111044..111433 /gene="mutT" /locus_tag="b0099" /gene_synonym="ECK0100; JW0097; nudA" /db_xref="EcoGene:EG10626" /db_xref="GeneID:944824" CDS 111044..111433 /gene="mutT" /locus_tag="b0099" /gene_synonym="ECK0100; JW0097; nudA" /EC_number="3.6.1.-" /function="enzyme; 2'-Deoxyribonucleotide metabolism" /experiment="N-terminus verified by Edman degradation: PMID 3288626" /GO_component="GO:0005737 - cytoplasm" /note="7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP, causes AT-GC transversions" /codon_start=1 /transl_table=11 /product="dGTP-preferring nucleoside triphosphate pyrophosphohydrolase" /protein_id="NP_414641.1" /db_xref="GI:16128092" /db_xref="ASAP:ABE-0000346" /db_xref="UniProtKB/Swiss-Prot:P08337" /db_xref="EcoGene:EG10626" /db_xref="GeneID:944824" /translation="MKKLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGE TPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWLVERWEGEPWGKEGQPG EWMSLVGLNADDFPPANEPVIAKLKRL" repeat_region 111430..111629 /note="RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site" gene complement(111649..111846) /gene="yacG" /locus_tag="b0101" /gene_synonym="ECK0101; JW5008" /db_xref="EcoGene:EG12314" /db_xref="GeneID:945630" CDS complement(111649..111846) /gene="yacG" /locus_tag="b0101" /gene_synonym="ECK0101; JW5008" /codon_start=1 /transl_table=11 /product="DNA gyrase inhibitor" /protein_id="NP_414643.1" /db_xref="GI:16128094" /db_xref="ASAP:ABE-0000351" /db_xref="UniProtKB/Swiss-Prot:P0A8H8" /db_xref="EcoGene:EG12314" /db_xref="GeneID:945630" /translation="MSETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEE KRIPSSGDLSESDDWSEEPKQ" gene complement(111856..112599) /gene="zapD" /locus_tag="b0102" /gene_synonym="ECK0102; JW0099; yacF" /db_xref="EcoGene:EG12313" /db_xref="GeneID:944873" CDS complement(111856..112599) /gene="zapD" /locus_tag="b0102" /gene_synonym="ECK0102; JW0099; yacF" /codon_start=1 /transl_table=11 /product="FtsZ stabilizer" /protein_id="NP_414644.1" /db_xref="GI:16128095" /db_xref="ASAP:ABE-0000355" /db_xref="UniProtKB/Swiss-Prot:P36680" /db_xref="EcoGene:EG12313" /db_xref="GeneID:944873" /translation="MQTQVLFEHPLNEKMRTWLRIEFLIQQLTVNLPIVDHAGALHFF RNVSELLDVFERGEVRTELLKELDRQQRKLQTWIGVPGVDQSRIEALIQQLKAAGSVL ISAPRIGQFLREDRLIALVRQRLSIPGGCCSFDLPTLHIWLHLPQAQRDSQVETWIAS LNPLTQALTMVLDLIRQSAPFRKQTSLNGFYQDNGGDADLLRLNLSLDSQLYPQISGH KSRFAIRFMPLDTENGQVPERLDFELACC" gene complement(112599..113219) /gene="coaE" /locus_tag="b0103" /gene_synonym="ECK0103; JW0100; yacE" /db_xref="EcoGene:EG12312" /db_xref="GeneID:949060" CDS complement(112599..113219) /gene="coaE" /locus_tag="b0103" /gene_synonym="ECK0103; JW0100; yacE" /EC_number="2.7.1.24" /function="orf; Not classified" /note="putative DNA repair protein" /codon_start=1 /transl_table=11 /product="dephospho-CoA kinase" /protein_id="NP_414645.1" /db_xref="GI:16128096" /db_xref="ASAP:ABE-0000357" /db_xref="UniProtKB/Swiss-Prot:P0A6I9" /db_xref="EcoGene:EG12312" /db_xref="GeneID:949060" /translation="MRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGA PALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQ ATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQA TREARLAVADDVIDNNGAPDAIASDVARLHAHYLQLASQFVSQEKP" gene 113444..114487 /gene="guaC" /locus_tag="b0104" /gene_synonym="ECK0104; JW0101" /db_xref="EcoGene:EG10422" /db_xref="GeneID:948986" CDS 113444..114487 /gene="guaC" /locus_tag="b0104" /gene_synonym="ECK0104; JW0101" /EC_number="1.7.1.7" /function="enzyme; Purine ribonucleotide biosynthesis" /experiment="N-terminus verified by Edman degradation: PMID 9298646" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion; GO:0009152 - purine ribonucleotide biosynthetic process" /codon_start=1 /transl_table=11 /product="GMP reductase" /protein_id="NP_414646.1" /db_xref="GI:16128097" /db_xref="ASAP:ABE-0000362" /db_xref="UniProtKB/Swiss-Prot:P60560" /db_xref="EcoGene:EG10422" /db_xref="GeneID:948986" /translation="MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSW SGVPIIAANMDTVGTFSMASALASFDILTAVHKHYSVEEWQAFINNSSADVLKHVMVS TGTSDADFEKTKQILDLNPALNFVCIDVANGYSEHFVQFVAKAREAWPTKTICAGNVV TGEMCEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIVS DGGCTTPGDVAKAFGGGADFVMLGGMLAGHEESGGRIVEENGEKFMLFYGMSSESAMK RHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFI RVQEQENRIFNNL" gene complement(114522..115724) /gene="hofC" /locus_tag="b0106" /gene_synonym="ECK0105; hopC; JW0102; yacD" /db_xref="EcoGene:EG11798" /db_xref="GeneID:945806" CDS complement(114522..115724) /gene="hofC" /locus_tag="b0106" /gene_synonym="ECK0105; hopC; JW0102; yacD" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake" /codon_start=1 /transl_table=11 /product="assembly protein in type IV pilin biogenesis, transmembrane protein" /protein_id="NP_414648.1" /db_xref="GI:16128099" /db_xref="ASAP:ABE-0000366" /db_xref="UniProtKB/Swiss-Prot:P36646" /db_xref="EcoGene:EG11798" /db_xref="GeneID:945806" /translation="MASKQLWRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLS LKRIAINSAQWRGDKSAEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAH DLEQGIAFSNALLPWSEVFPPLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVK SALRYPIIILAMAIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSW LLVLFGFLLAIANKLLMRRPTWLIVRQKLLLRIPIMGSLMRGQKLTQIFTILALTQSA GITFLQGVESVRETMRCPYWVQLLTQIQHDISNGQPIWLALKNTGEFSPLCLQLVRTG EASGSLDLMLDNLAHHHRENTMALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHL GDAMSGMG" gene complement(115714..117099) /gene="hofB" /locus_tag="b0107" /gene_synonym="ECK0106; hopB; JW0103" /db_xref="EcoGene:EG12106" /db_xref="GeneID:947481" CDS complement(115714..117099) /gene="hofB" /locus_tag="b0107" /gene_synonym="ECK0106; hopB; JW0103" /function="putative transport; Not classified" /GO_component="GO:0009289 - pilus" /note="putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake" /codon_start=1 /transl_table=11 /product="T2SE secretion family protein; P-loop ATPase superfamily protein" /protein_id="NP_414649.1" /db_xref="GI:16128100" /db_xref="ASAP:ABE-0000370" /db_xref="UniProtKB/Swiss-Prot:P36645" /db_xref="EcoGene:EG12106" /db_xref="GeneID:947481" /translation="MNIPQLTALCLRYHGVLLDASEEVVHVAVVDAPSHELLDALHFA TTKRIEITCWTRQQMEGHASRTQQTLPVAVQEKHQPKAELLTRTLQSALEQRASDIHI EPADNAYRIRLRIDGVLHPLPDVSPDAGVALTARLKVLGNLDIAEHRLPQDGQFTVEL AGNAVSFRIATLPCRGGEKVVLRLLQQVGQALDVNTLGMQPLQLADFAHALQQPQGLV LVTGPTGSGKTVTLYSALQKLNTADINICSVEDPVEIPIAGLNQTQIHPRAGLTFQGV LRALLRQDPDVIMIGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTCETLVRLQQMGVA RWMLSSALTLVIAQRLVRKLCPHCRRQQGEPIHIPDNVWPSPLPHWQAPGCVHCYHGF YGRTALFEVLPITPVIRQLISANTDVESLETHARQAGMRTLFENGCLAVEQGLTTFEE LIRVLGMPHGE" gene complement(117109..117549) /gene="ppdD" /locus_tag="b0108" /gene_synonym="ECK0107; JW0104" /db_xref="EcoGene:EG12107" /db_xref="GeneID:945817" CDS complement(117109..117549) /gene="ppdD" /locus_tag="b0108" /gene_synonym="ECK0107; JW0104" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="prelipin peptidase dependent protein" /codon_start=1 /transl_table=11 /product="putative prepilin peptidase-dependent pilin" /protein_id="NP_414650.1" /db_xref="GI:16128101" /db_xref="ASAP:ABE-0000372" /db_xref="UniProtKB/Swiss-Prot:P36647" /db_xref="EcoGene:EG12107" /db_xref="GeneID:945817" /translation="MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQ TFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTRYVSAMSVAKGVVSLTGQESLNG LSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN" gene complement(117752..118645) /gene="nadC" /locus_tag="b0109" /gene_synonym="ECK0108; JW0105" /db_xref="EcoGene:EG11546" /db_xref="GeneID:948869" CDS complement(117752..118645) /gene="nadC" /locus_tag="b0109" /gene_synonym="ECK0108; JW0105" /EC_number="2.4.2.19" /function="enzyme; Biosynthesis of cofactors, carriers: Pyridine nucleotide" /GO_process="GO:0009435 - NAD biosynthetic process" /codon_start=1 /transl_table=11 /product="quinolinate phosphoribosyltransferase" /protein_id="NP_414651.1" /db_xref="GI:16128102" /db_xref="ASAP:ABE-0000374" /db_xref="UniProtKB/Swiss-Prot:P30011" /db_xref="EcoGene:EG11546" /db_xref="GeneID:948869" /translation="MPPRRYNPDTRRDELLERINLDIPGAVAQALREDLGGTVDANND ITAKLLPENSRSHATVITRENGVFCGKRWVEEVFIQLAGDDVTIIWHVDDGDVINANQ SLFELEGPSRVLLTGERTALNFVQTLSGVASKVRHYVELLEGTNTQLLDTRKTLPGLR SALKYAVLCGGGANHRLGLSDAFLIKENHIIASGSVRQAVEKASWLHPDAPVEVEVEN LEELDEALKAGADIIMLDNFETEQMREAVKRTNGKALLEVSGNVTDKTLREFAETGVD FISVGALTKHVQALDLSMRFR" gene 118733..119284 /gene="ampD" /locus_tag="b0110" /gene_synonym="ECK0109; JW0106" /db_xref="EcoGene:EG10041" /db_xref="GeneID:948877" CDS 118733..119284 /gene="ampD" /locus_tag="b0110" /gene_synonym="ECK0109; JW0106" /EC_number="3.5.1.28" /function="regulator; Not classified" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0000270 - peptidoglycan metabolic process" /note="regulates ampC" /codon_start=1 /transl_table=11 /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase" /protein_id="NP_414652.1" /db_xref="GI:16128103" /db_xref="ASAP:ABE-0000380" /db_xref="UniProtKB/Swiss-Prot:P13016" /db_xref="EcoGene:EG10041" /db_xref="GeneID:948877" /translation="MLLEQGWLVGARRVPSPHYDCRPDDETPTLLVVHNISLPPGEFG GPWIDALFTGTIDPQAHPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSQY QGRERCNDFSIGIELEGTDTLAYTDAQYQQLAAVTRALIDCYPDIAKNMTGHCDIAPD RKTDPGPAFDWARFRVLVSKETT" gene 119281..120135 /gene="ampE" /locus_tag="b0111" /gene_synonym="ECK0110; JW0107" /db_xref="EcoGene:EG10042" /db_xref="GeneID:946678" CDS 119281..120135 /gene="ampE" /locus_tag="b0111" /gene_synonym="ECK0110; JW0107" /function="regulator; Drug/analog sensitivity" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042493 - response to drug" /note="regulates ampC" /codon_start=1 /transl_table=11 /product="ampicillin resistance inner membrane protein; putative signaling protein in beta-lactamase regulation" /protein_id="NP_414653.1" /db_xref="GI:16128104" /db_xref="ASAP:ABE-0000382" /db_xref="UniProtKB/Swiss-Prot:P0AE14" /db_xref="EcoGene:EG10042" /db_xref="GeneID:946678" /translation="MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTL GMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRND SHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPV TLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKAL PAWFASLGDFHTSQYQVLTRLAQFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIAL LTIYGALV" gene complement(120178..121551) /gene="aroP" /locus_tag="b0112" /gene_synonym="ECK0111; JW0108" /db_xref="EcoGene:EG10084" /db_xref="GeneID:946018" CDS complement(120178..121551) /gene="aroP" /locus_tag="b0112" /gene_synonym="ECK0111; JW0108" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009094 - L-phenylalanine biosynthetic process; GO:0006571 - tyrosine biosynthetic process" /note="aromatic amino acid transport protein" /codon_start=1 /transl_table=11 /product="aromatic amino acid transporter" /protein_id="NP_414654.1" /db_xref="GI:16128105" /db_xref="ASAP:ABE-0000384" /db_xref="UniProtKB/Swiss-Prot:P15993" /db_xref="EcoGene:EG10084" /db_xref="GeneID:946018" /translation="MMEGQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSA GPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVL YVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIK VIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLE LVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIF HELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPV NTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQG VVTRFPALLYPLGNWICLLFMAAVLVIMLMTPGMAISVYLIPVWLIVLGIGYLFKEKT AKAVKAH" gene 122092..122856 /gene="pdhR" /locus_tag="b0113" /gene_synonym="aceC; ECK0112; genA; JW0109; yacB" /db_xref="EcoGene:EG11088" /db_xref="GeneID:944827" CDS 122092..122856 /gene="pdhR" /locus_tag="b0113" /gene_synonym="aceC; ECK0112; genA; JW0109; yacB" /function="regulator; Energy metabolism, carbon: Pyruvate dehydrogenase" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006096 - glycolysis; GO:0006350 - transcription" /note="transcriptional regulator for pyruvate dehydrogenase complex" /codon_start=1 /transl_table=11 /product="pyruvate dehydrogenase complex repressor; autorepressor" /protein_id="NP_414655.1" /db_xref="GI:16128106" /db_xref="ASAP:ABE-0000394" /db_xref="UniProtKB/Swiss-Prot:P0ACL9" /db_xref="EcoGene:EG11088" /db_xref="GeneID:944827" /translation="MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQF DVSRPSLREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQYDLLE TRHALEGIAAYYAALRSTDEDKERIRELHHAIELAQQSGDLDAESNAVLQYQIAVTEA AHNVVLLHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAR EASHRHLAFIEEILLDRSREESRRERSLRRLEQRKN" gene 123017..125680 /gene="aceE" /locus_tag="b0114" /gene_synonym="ECK0113; JW0110" /db_xref="EcoGene:EG10024" /db_xref="GeneID:944834" CDS 123017..125680 /gene="aceE" /locus_tag="b0114" /gene_synonym="ECK0113; JW0110" /EC_number="1.2.4.1" /function="enzyme; Energy metabolism, carbon: Pyruvate dehydrogenase" /GO_process="GO:0006086 - acetyl-CoA biosynthetic process from pyruvate; GO:0009061 - anaerobic respiration; GO:0016052 - carbohydrate catabolic process; GO:0006096 - glycolysis; GO:0009436 - glyoxylate catabolic process" /note="pyruvate dehydrogenase (decarboxylase component)" /codon_start=1 /transl_table=11 /product="pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate-binding" /protein_id="NP_414656.1" /db_xref="GI:16128107" /db_xref="ASAP:ABE-0000397" /db_xref="UniProtKB/Swiss-Prot:P0AFG8" /db_xref="EcoGene:EG10024" /db_xref="GeneID:944834" /translation="MSERFPNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEA RKGGVNVAAGTGISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDL ELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQ EQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLK DTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKII NELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYV REHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVILAHTI KGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHT YLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLK NKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQIL QEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFL IGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEK QENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETIEGSKGKVQLLGSGSILRHVR EAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMNDAPA VASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGE LAKRGEIDKKVVADAIAKFNIDADKVNPRLA" gene 125695..127587 /gene="aceF" /locus_tag="b0115" /gene_synonym="ECK0114; JW0111" /db_xref="EcoGene:EG10025" /db_xref="GeneID:944794" CDS 125695..127587 /gene="aceF" /locus_tag="b0115" /gene_synonym="ECK0114; JW0111" /EC_number="2.3.1.12" /function="enzyme; Energy metabolism, carbon: Pyruvate dehydrogenase" /GO_process="GO:0006086 - acetyl-CoA biosynthetic process from pyruvate; GO:0009061 - anaerobic respiration; GO:0016052 - carbohydrate catabolic process; GO:0006096 - glycolysis; GO:0009436 - glyoxylate catabolic process" /note="pyruvate dehydrogenase (dihydrolipoyltransacetylase component)" /codon_start=1 /transl_table=11 /product="pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2" /protein_id="NP_414657.1" /db_xref="GI:16128108" /db_xref="ASAP:ABE-0000400" /db_xref="UniProtKB/Swiss-Prot:P06959" /db_xref="EcoGene:EG10025" /db_xref="GeneID:944794" /translation="MAIEIKVPDIGADEVEITEILVKVGDKVEAEQSLITVEGDKASM EVPSPQAGIVKEIKVSVGDKTQTGALIMIFDSADGAADAAPAQAEEKKEAAPAAAPAA AAAKDVNVPDIGSDEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEI KVNVGDKVSTGSLIMVFEVAGEAGAAAPAAKQEAAPAAAPAPAAGVKEVNVPDIGGDE VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIM IFEVEGAAPAAAPAKQEAAAPAPAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLIR RLAREFGVNLAKVKGTGRKGRILREDVQAYVKEAIKRAEAAPAATGGGIPGMLPWPKV DFSKFGEIEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITELEAFRKQQNEEAAK RKLDVKITPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYINIGVAVDTPNGLVV PVFKDVNKKGIIELSRELMTISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVN APEVAILGVSKSAMEPVWNGKEFVPRLMLPISLSFDHRVIDGADGARFITIINNTLSD IRRLVM" gene 127912..129336 /gene="lpd" /locus_tag="b0116" /gene_synonym="dhl; ECK0115; JW0112; lpdA" /db_xref="EcoGene:EG10543" /db_xref="GeneID:944854" CDS 127912..129336 /gene="lpd" /locus_tag="b0116" /gene_synonym="dhl; ECK0115; JW0112; lpdA" /EC_number="1.8.1.4" /function="enzyme; Energy metabolism, carbon: Pyruvate dehydrogenase" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006086 - acetyl-CoA biosynthetic process from pyruvate; GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration; GO:0016052 - carbohydrate catabolic process; GO:0009063 - cellular amino acid catabolic process; GO:0006096 - glycolysis; GO:0009436 - glyoxylate catabolic process; GO:0006099 - tricarboxylic acid cycle" /note="lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex" /codon_start=1 /transl_table=11 /product="dihydrolipoyl dehydrogenase; E3 component of pyruvate and 2-oxoglutarate dehydrogenases complexes; glycine cleavage system L protein; dihydrolipoamide dehydrogenase" /protein_id="NP_414658.1" /db_xref="GI:16128109" /db_xref="ASAP:ABE-0000404" /db_xref="UniProtKB/Swiss-Prot:P0A9P0" /db_xref="EcoGene:EG10543" /db_xref="GeneID:944854" /translation="MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGV CLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLA GMAKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDP RIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDI VKVFTKRISKKFNLMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPN GKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEV IAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDC ADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE SVGLAAEVFEGSITDLPNPKAKKK" repeat_region 129347..129361 /note="REP9 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(129407..131260) /gene="yacH" /locus_tag="b0117" /gene_synonym="ECK0116; JW0113" /db_xref="EcoGene:EG12315" /db_xref="GeneID:944868" CDS complement(129407..131260) /gene="yacH" /locus_tag="b0117" /gene_synonym="ECK0116; JW0113" /function="putative membrane; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /note="putative membrane protein" /codon_start=1 /transl_table=11 /product="DUF3300 family protein" /protein_id="NP_414659.1" /db_xref="GI:16128110" /db_xref="ASAP:ABE-0000406" /db_xref="UniProtKB/Swiss-Prot:P36682" /db_xref="EcoGene:EG12315" /db_xref="GeneID:944868" /translation="MKMTLPFKPHVLALICSAGLCAASTGLYIKSRTVEAPVEPQSTQ LAVSDAAAVTFPATVSAPPVTPAVVKSAFSTAQIDQWVAPVALYPDALLSQVLMASTY PTNVAQAVQWSHDNPLKQGDAAIQAVSDQPWDASVKSLVAFPQLMALMGENPQWVQNL GDAFLAQPQDVMDSVQRLRQLAQQTGSLKSSTEQKVITTTKKAVPVKQTVTAPVIPSN TVLTANPVITEPATTVISIEPANPDVVYIPNYNPTVVYGNWANTAYPPVYLPPPAGEP FVDSFVRGFGYSMGVATTYALFSSIDWDDDDHDHHHHDNDDYHHHDGGHRDGNGWQHN GDNINIDVNNFNRITGEHLTDKNMAWRHNPNYRNGVPYHDQDMAKRFHQTDVNGGMSA TQLPAPTRDSQRQAAANQFQQRTHAAPVITRDTQRQAAAQRFNEAEHYGSYDDFHDFS RRQPLTQQQKDAARQRYQSASPEQRQAVRERMQTNPKIQQRREAARERIQSASPEQRQ AVREKMQTNPQNQQRRDAARERIQSASPEQRQVFKEKVQQRPLNQQQRDNARQRVQSA SPEQRQVFREKVQESRPQRLNDSNHTVRLNNEQRSAVCERLSERGARRLER" gene 131615..134212 /gene="acnB" /locus_tag="b0118" /gene_synonym="ECK0117; JW0114; yacI; yacJ" /db_xref="EcoGene:EG12316" /db_xref="GeneID:944864" CDS 131615..134212 /gene="acnB" /locus_tag="b0118" /gene_synonym="ECK0117; JW0114; yacI; yacJ" /EC_number="4.2.1.3" /EC_number="4.2.1.99" /function="enzyme; Energy metabolism, carbon: TCA cycle" /experiment="N-terminus verified by Edman degradation: PMID 8932712,9298646,12473114" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration; GO:0006099 - tricarboxylic acid cycle" /note="aconitate hydrase B" /codon_start=1 /transl_table=11 /product="aconitate hydratase 2; aconitase B; 2-methyl-cis-aconitate hydratase" /protein_id="NP_414660.1" /db_xref="GI:16128111" /db_xref="ASAP:ABE-0000411" /db_xref="UniProtKB/Swiss-Prot:P36683" /db_xref="EcoGene:EG12316" /db_xref="GeneID:944864" /translation="MLEEYRKHVAERAAEGIAPKPLDANQMAALVELLKNPPAGEEEF LLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKSPLLTPEKAIELLGTMQGGYNIHPL IDALDDAKLAPIAAKALSHTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRP ALAEKLTVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVG PIKQIEALQQKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGG KIAPIFFNTMEDAGALPIEVDVSNLNMGDVIDVYPYKGEVRNHETGELLATFELKTDV LIDEVRAGGRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESDRGFSLAQKMVGRA CGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPK PVDVNTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISF PAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVE KKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNI VLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADADAEYAAVIDIDLADIKEPIL CAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRAAGKLLDAHKGQLPTRLWVAPP TRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLG TGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDTYRYLNFNQLSQYTEKA DGVIFQTAV" gene 134388..134750 /gene="yacL" /locus_tag="b0119" /gene_synonym="ECK0118; JW0115" /db_xref="EcoGene:EG12605" /db_xref="GeneID:944809" CDS 134388..134750 /gene="yacL" /locus_tag="b0119" /gene_synonym="ECK0118; JW0115" /codon_start=1 /transl_table=11 /product="UPF0231 family protein" /protein_id="NP_414661.2" /db_xref="GI:90111086" /db_xref="ASAP:ABE-0000414" /db_xref="UniProtKB/Swiss-Prot:P0A8E5" /db_xref="EcoGene:EG12605" /db_xref="GeneID:944809" /translation="MDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQ AAHALKGSERSWQRAGHEYTLWMDGEEVMVRANQLEFAGDEMEEGMNYYDEESLSLCG VEDFLQVVAAYRNFVQQK" gene complement(134788..135582) /gene="speD" /locus_tag="b0120" /gene_synonym="ECK0119; JW0116" /db_xref="EcoGene:EG10962" /db_xref="GeneID:947719" CDS complement(134788..135582) /gene="speD" /locus_tag="b0120" /gene_synonym="ECK0119; JW0116" /EC_number="4.1.1.50" /function="enzyme; Central intermediary metabolism: Polyamine biosynthesis" /experiment="N-terminus verified by Edman degradation: PMID 3546296" /GO_process="GO:0006596 - polyamine biosynthetic process" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine decarboxylase" /protein_id="NP_414662.1" /db_xref="GI:16128113" /db_xref="ASAP:ABE-0000416" /db_xref="UniProtKB/Swiss-Prot:P0A7F6" /db_xref="EcoGene:EG10962" /db_xref="GeneID:947719" /translation="MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYN ANRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLP ETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDI VTIDYRVRGFTRDINGMKHFIDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKML LKEFDLKHYMFHTKPEDLTDSERQEITAALWKEMREIYYGRNMPAV" gene complement(135598..136464) /gene="speE" /locus_tag="b0121" /gene_synonym="ECK0120; JW0117" /db_xref="EcoGene:EG10963" /db_xref="GeneID:947726" CDS complement(135598..136464) /gene="speE" /locus_tag="b0121" /gene_synonym="ECK0120; JW0117" /EC_number="2.5.1.16" /function="enzyme; Central intermediary metabolism: Polyamine biosynthesis" /GO_process="GO:0006596 - polyamine biosynthetic process" /note="spermidine synthase = putrescine aminopropyltransferase" /codon_start=1 /transl_table=11 /product="spermidine synthase (putrescine aminopropyltransferase)" /protein_id="NP_414663.1" /db_xref="GI:16128114" /db_xref="ASAP:ABE-0000418" /db_xref="UniProtKB/Swiss-Prot:P09158" /db_xref="EcoGene:EG10963" /db_xref="GeneID:947726" /translation="MAEKKQWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFG RVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVE SITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCT DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGF YQAAIPTYYGGIMTFAWATDNDALRHLSTEIIQARFLASGLKCRYYNPAIHTAAFALP QYLQDALASQPS" gene complement(136570..136917) /gene="yacC" /locus_tag="b0122" /gene_synonym="ECK0121; gspS; JW0118" /db_xref="EcoGene:EG11089" /db_xref="GeneID:948472" CDS complement(136570..136917) /gene="yacC" /locus_tag="b0122" /gene_synonym="ECK0121; gspS; JW0118" /codon_start=1 /transl_table=11 /product="PulS_OutS family protein" /protein_id="NP_414664.4" /db_xref="GI:90111087" /db_xref="ASAP:ABE-0000423" /db_xref="UniProtKB/Swiss-Prot:P0AA95" /db_xref="EcoGene:EG11089" /db_xref="GeneID:948472" /translation="MKTFFRTVLFGSLMAVCANSYALSESEAEDMADLTAVFVFLKND CGYQNLPNGQIRRALVFFAQQNQWDLSNYDTFDMKALGEDSYRDLSGIGIPVAKKCKA LARDSLSLLAYVK" gene 137083..138633 /gene="cueO" /locus_tag="b0123" /gene_synonym="cuiD; ECK0122; JW0119; yacK" /db_xref="EcoGene:EG12318" /db_xref="GeneID:947736" CDS 137083..138633 /gene="cueO" /locus_tag="b0123" /gene_synonym="cuiD; ECK0122; JW0119; yacK" /codon_start=1 /transl_table=11 /product="multicopper oxidase (laccase)" /protein_id="NP_414665.1" /db_xref="GI:16128116" /db_xref="ASAP:ABE-0000430" /db_xref="UniProtKB/Swiss-Prot:P36649" /db_xref="EcoGene:EG12318" /db_xref="GeneID:947736" /translation="MQRRDFLKYSVALGVASALPLWSRAVFAAERPTLPIPDLLTTDA RNRIQLTIGAGQSTFGGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHW HGLEVPGEVDGGPQGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLV VIEDDEILKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNG AIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVL MGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALPDTL SSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGN MNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAKGQYERWVISGVGDMMLHPFHIHGT QFRILSENGKPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDT GMMLGFTV" repeat_region 138699..138796 /note="RIP10 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(138835..141225) /gene="gcd" /locus_tag="b0124" /gene_synonym="ECK0123; JW0120" /db_xref="EcoGene:EG10369" /db_xref="GeneID:944830" CDS complement(138835..141225) /gene="gcd" /locus_tag="b0124" /gene_synonym="ECK0123; JW0120" /EC_number="1.1.5.2" /function="enzyme; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 8509415" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006006 - glucose metabolic process" /codon_start=1 /transl_table=11 /product="glucose dehydrogenase" /protein_id="NP_414666.1" /db_xref="GI:16128117" /db_xref="ASAP:ABE-0000433" /db_xref="UniProtKB/Swiss-Prot:P15877" /db_xref="EcoGene:EG10369" /db_xref="GeneID:944830" /translation="MAINNTGSRRLLVTLTALFAALCGLYLLIGGGWLVAIGGSWYYP IAGLVMLGVAWMLWRSKRAALWLYAALLLGTMIWGVWEVGFDFWALTPRSDILVFFGI WLILPFVWRRLVIPASGAVAALVVALLISGGILTWAGFNDPQEINGTLSADATPAEAI SPVADQDWPAYGRNQEGQRFSPLKQINADNVHNLKEAWVFRTGDVKQPNDPGEITNEV TPIKVGDTLYLCTAHQRLFALDAASGKEKWHYDPELKTNESFQHVTCRGVSYHEAKAE TASPEVMADCPRRIILPVNDGRLIAINAENGKLCETFANKGVLNLQSNMPDTKPGLYE PTSPPIITDKTIVMAGSVTDNFSTRETSGVIRGFDVNTGELLWAFDPGAKDPNAIPSD EHTFTFNSPNSWAPAAYDAKLDLVYLPMGVTTPDIWGGNRTPEQERYASSILALNATT GKLAWSYQTVHHDLWDMDLPAQPTLADITVNGQKVPVIYAPAKTGNIFVLDRRNGELV VPAPEKPVPQGAAKGDYVTPTQPFSELSFRPTKDLSGADMWGATMFDQLVCRVMFHQM RYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPNREVAIANPMALPFVSKLIPRGPGN PMEQPKDAKGTGTESGIQPQYGVPYGVTLNPFLSPFGLPCKQPAWGYISALDLKTNEV VWKKRIGTPQDSMPFPMPVPVPFNMGMPMLGGPISTAGNVLFIAATADNYLRAYNMSN GEKLWQGRLPAGGQATPMTYEVNGKQYVVISAGGHGSFGTKMGDYIVAYALPDDVK" gene 141431..141967 /gene="hpt" /locus_tag="b0125" /gene_synonym="ECK0124; JW5009" /db_xref="EcoGene:EG20098" /db_xref="GeneID:946624" CDS 141431..141967 /gene="hpt" /locus_tag="b0125" /gene_synonym="ECK0124; JW5009" /EC_number="2.4.2.8" /function="enzyme; Salvage of nucleosides and nucleotides" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="hypoxanthine phosphoribosyltransferase" /protein_id="NP_414667.4" /db_xref="GI:90111088" /db_xref="ASAP:ABE-0000440" /db_xref="UniProtKB/Swiss-Prot:P0A9M2" /db_xref="EcoGene:EG20098" /db_xref="GeneID:946624" /translation="MKHTVEVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRG SFMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDII DSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDY AQRYRHLPYIGKVILLDE" repeat_region 141978..141998 /note="REP11 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(142008..142670) /gene="can" /locus_tag="b0126" /gene_synonym="ECK0125; JW0122; yadF" /db_xref="EcoGene:EG12319" /db_xref="GeneID:944832" CDS complement(142008..142670) /gene="can" /locus_tag="b0126" /gene_synonym="ECK0125; JW0122; yadF" /EC_number="4.2.1.1" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /note="putative carbonic anhdrase" /codon_start=1 /transl_table=11 /product="carbonic anhydrase" /protein_id="NP_414668.1" /db_xref="GI:16128119" /db_xref="ASAP:ABE-0000442" /db_xref="UniProtKB/Swiss-Prot:P61517" /db_xref="EcoGene:EG12319" /db_xref="GeneID:944832" /translation="MKDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSD SRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHYGCG GVQAAVENPELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYNLGH STIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNRETLEQRYRHGISNLKLKHAN HK" gene 142779..143705 /gene="yadG" /locus_tag="b0127" /gene_synonym="ECK0126; JW0123" /db_xref="EcoGene:EG12320" /db_xref="GeneID:944833" CDS 142779..143705 /gene="yadG" /locus_tag="b0127" /gene_synonym="ECK0126; JW0123" /function="putative transport; Not classified" /GO_component="GO:0005737 - cytoplasm" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="putative ABC transporter ATPase" /protein_id="NP_414669.1" /db_xref="GI:16128120" /db_xref="ASAP:ABE-0000447" /db_xref="UniProtKB/Swiss-Prot:P36879" /db_xref="EcoGene:EG12320" /db_xref="GeneID:944833" /translation="MTIALELQQLKKTYPGGVQALRGIDLQVEAGDFYALLGPNGAGK STTIGIISSLVNKTSGRVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQ AGYYGVERKEAYIRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLIL DEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENT SMKALLAKLKSETFILDLAPKSPLPKLDGYQYRLVDTATLEVEVLREQGINSVFTQLS EQGIQVLSMRNKANRLEELFVSLVNEKQGDRA" gene 143702..144472 /gene="yadH" /locus_tag="b0128" /gene_synonym="ECK0127; JW0124" /db_xref="EcoGene:EG12321" /db_xref="GeneID:944836" CDS 143702..144472 /gene="yadH" /locus_tag="b0128" /gene_synonym="ECK0127; JW0124" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative ABC transporter permease" /protein_id="NP_414670.1" /db_xref="GI:16128121" /db_xref="ASAP:ABE-0000450" /db_xref="UniProtKB/Swiss-Prot:P0AFN6" /db_xref="EcoGene:EG12321" /db_xref="GeneID:944836" /translation="MMHLYWVALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGN LIGSRIGDMHGFSYMQFIVPGLIMMSVITNAYANVASSFFGAKFQRNIEELLVAPVPT HVIIAGYVGGGVARGLFVGILVTAISLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLN GVFAKTFDDISLVPTFVLTPLTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGF LGINDVPLVTTFGVLVVFIVAFYLICWSLIQRGRGLRS" gene 144577..145017 /gene="yadI" /locus_tag="b0129" /gene_synonym="agaX; ECK0128; JW0125" /db_xref="EcoGene:EG12322" /db_xref="GeneID:947397" CDS 144577..145017 /gene="yadI" /locus_tag="b0129" /gene_synonym="agaX; ECK0128; JW0125" /function="putative transport; Not classified" /GO_process="GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system" /note="putative PTS enzyme II B component" /codon_start=1 /transl_table=11 /product="putative PTS Enzyme IIA" /protein_id="NP_414671.1" /db_xref="GI:16128122" /db_xref="ASAP:ABE-0000453" /db_xref="UniProtKB/Swiss-Prot:P36881" /db_xref="EcoGene:EG12322" /db_xref="GeneID:947397" /translation="MLGWVITCHDDRAQEILDALEKKHGALLQCRAVNFWRGLSSNML SRMMCDALHEADSGEGVIFLTDIAGAPPYRVASLLSHKHSRCEVISGVTLPLIEQMMA CRETMTSSEFRERIVELGAPEVSSLWHQQQKNPPFVLKHNLYEY" gene 145081..146310 /gene="yadE" /locus_tag="b0130" /gene_synonym="ECK0129; JW0126" /db_xref="EcoGene:EG11749" /db_xref="GeneID:946536" CDS 145081..146310 /gene="yadE" /locus_tag="b0130" /gene_synonym="ECK0129; JW0126" /note="conserved hypothetical protein" /codon_start=1 /transl_table=11 /product="putative polysaccharide deacetylase lipoprotein" /protein_id="NP_414672.1" /db_xref="GI:16128123" /db_xref="ASAP:ABE-0000457" /db_xref="UniProtKB/Swiss-Prot:P31666" /db_xref="EcoGene:EG11749" /db_xref="GeneID:946536" /translation="MYKQAVILLLMLFTASVSAALPARYMQTIENAAVWAQIGDKMVT VGNIRAGQIIAVEPTAASYYAFNFGFGKGFIDKGHLEPVQGRQKVEDGLGDLNKPLSN QNLVTWKDTPVYNAPSAGSAPFGVLADNLRYPILHKLKDRLNQTWYQIRIGDRLAYIS ALDAQPDNGLSVLTYHHILRDEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMVQ LEGYVKNKINLPARAVVITFDDGLKSVSRYAYPVLKQYGMKATAFIVTSRIKRHPQKW NPKSLQFMSVSELNEIRDVFDFQSHTHFLHRVDGYRRPILLSRSEHNILFDFARSRRA LAQFNPHVWYLSYPFGGFNDNAVKAANDAGFHLAVTTMKGKVKPGDNPLLLKRLYILR TDSLETMSRLVSNQPQG" gene complement(146314..146694) /gene="panD" /locus_tag="b0131" /gene_synonym="ECK0130; JW0127" /db_xref="EcoGene:EG11747" /db_xref="GeneID:945686" CDS complement(146314..146694) /gene="panD" /locus_tag="b0131" /gene_synonym="ECK0130; JW0127" /EC_number="4.1.1.11" /function="enzyme; Biosynthesis of cofactors, carriers: Pantothenate" /experiment="N-terminus verified by Edman degradation: PMID 9169598" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015937 - coenzyme A biosynthetic process" /codon_start=1 /transl_table=11 /product="aspartate 1-decarboxylase" /protein_id="NP_414673.1" /db_xref="GI:16128124" /db_xref="ASAP:ABE-0000459" /db_xref="UniProtKB/Swiss-Prot:P0A790" /db_xref="EcoGene:EG11747" /db_xref="GeneID:945686" /translation="MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAI DIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWR PNVAYFEGDNEMKRTAKAIPVQVA" gene 146968..147870 /gene="yadD" /locus_tag="b0132" /gene_synonym="ECK0131; JW5010" /db_xref="EcoGene:EG11748" /db_xref="GeneID:944781" CDS 146968..147870 /gene="yadD" /locus_tag="b0132" /gene_synonym="ECK0131; JW5010" /codon_start=1 /transl_table=11 /product="transposase_31 family protein" /protein_id="NP_414674.1" /db_xref="GI:16128125" /db_xref="ASAP:ABE-0000463" /db_xref="UniProtKB/Swiss-Prot:P31665" /db_xref="EcoGene:EG11748" /db_xref="GeneID:944781" /translation="MDAPSTTPHDAVFKQFLMHAETARDFLEIHLPVELRELCDLNTL HLESGSFIEESLKGHSTDVLYSVQMQGNPGYLHVVIEHQSKPDKKMAFRMMRYSIAAM HRHLEADHDKLPLVVPILFYQGEATPYPLSMCWFDMFYSPELARRVYNSPFPLVDITI TPDDEIMQHRRIAILELLQKHIRQRDLMLLLEQLVTLIDEGYTSGSQLVAMQNYMLQR GHTEQADLFYGVLRDRETGGESMMTLAQWFEEKGIEKGIQQGRQEVSQEFAQRLLSKG MSREDVAEMANLPLAEIDKVINLI" gene complement(147944..148795) /gene="panC" /locus_tag="b0133" /gene_synonym="ECK0132; JW0129" /db_xref="EcoGene:EG11746" /db_xref="GeneID:944958" CDS complement(147944..148795) /gene="panC" /locus_tag="b0133" /gene_synonym="ECK0132; JW0129" /EC_number="6.3.2.1" /function="enzyme; Biosynthesis of cofactors, carriers: Pantothenate" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015937 - coenzyme A biosynthetic process" /codon_start=1 /transl_table=11 /product="pantothenate synthetase" /protein_id="NP_414675.1" /db_xref="GI:16128126" /db_xref="ASAP:ABE-0000465" /db_xref="UniProtKB/Swiss-Prot:P31663" /db_xref="EcoGene:EG11746" /db_xref="GeneID:944958" /translation="MLIIETLPLLRQQIRRLRMEGKRVALVPTMGNLHDGHMKLVDEA KARADVVVVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKRKVDLVFAPSVKEIYPNG TETHTYVDVPGLSTMLEGASRPGHFRGVSTIVSKLFNLVQPDIACFGEKDFQQLALIR KMVADMGFDIEIVGVPIMRAKDGLALSSRNGYLTAEQRKIAPGLYKVLSSIADKLQAG ERDLDEIITIAGQELNEKGFRADDIQIRDADTLLEVSETSKRAVILVAAWLGDARLID NKMVELA" gene complement(148807..149601) /gene="panB" /locus_tag="b0134" /gene_synonym="ECK0133; JW0130; panA" /db_xref="EcoGene:EG11675" /db_xref="GeneID:944839" CDS complement(148807..149601) /gene="panB" /locus_tag="b0134" /gene_synonym="ECK0133; JW0130; panA" /EC_number="2.1.2.11" /function="enzyme; Biosynthesis of cofactors, carriers: Pantothenate" /experiment="N-terminus verified by Edman degradation: PMID 8096212,9298646" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015937 - coenzyme A biosynthetic process" /codon_start=1 /transl_table=11 /product="3-methyl-2-oxobutanoate hydroxymethyltransferase" /protein_id="NP_414676.1" /db_xref="GI:16128127" /db_xref="ASAP:ABE-0000467" /db_xref="UniProtKB/Swiss-Prot:P31057" /db_xref="EcoGene:EG11675" /db_xref="GeneID:944839" /translation="MKPTTISLLQKYKQEKKRFATITAYDYSFAKLFADEGLNVMLVG DSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAAT VMRAGANMVKIEGGEWLVETVQMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAG DQLLSDALALEAAGAQLLVLECVPVELAKRITEALAIPVIGIGAGNVTDGQILVMHDA FGITGGHIPKFAKNFLAETGDIRAAVRQYMAEVESGVYPGEEHSFH" gene complement(149715..150953) /gene="yadC" /locus_tag="b0135" /gene_synonym="ECK0134; JW0131" /db_xref="EcoGene:EG11678" /db_xref="GeneID:944837" CDS complement(149715..150953) /gene="yadC" /locus_tag="b0135" /gene_synonym="ECK0134; JW0131" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="putative fimbrial-like protein" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_414677.1" /db_xref="GI:16128128" /db_xref="ASAP:ABE-0000470" /db_xref="UniProtKB/Swiss-Prot:P31058" /db_xref="EcoGene:EG11678" /db_xref="GeneID:944837" /translation="MKTIFRYILFLALYSCCNTVSAYTSFIVGNNAGVDNYRGPSTAA QMTFNYTSTASNLVFYKPTQLGPTGVKMYWSYLDTGTGGGILYCNTSGRANPGPITIE NAMVYSGKDYGGHKLFNTSVPGLYYTMLISRVWSAYDTITDIQSPGIYIGDPSNQEFF FSVTDSDLQTKGCNKADDYDKFWAIGGIVHNITVEFYTDTNFDPTLNQQVQLSSSSNY LYSFKAYSPGTKVVDHSNHIYVNFTLNNVKLTLPTCFTSILTGPSVNGSTVRMGEYSS GTIKNGASPVPFDISLQNCIRVRNIETKLVTGKVGTQNTQLLGNTLTGSTAAKGVGVL IEGLATSKNPLMTLKPNDTNSVYIDYETEDDTSDGVYPNQGNGTSQPLHFQATLKQDG NIAIEPGEFKATSTFQVTYP" gene complement(151003..151599) /gene="yadK" /locus_tag="b0136" /gene_synonym="ECK0135; JW0132" /db_xref="EcoGene:EG12325" /db_xref="GeneID:944835" CDS complement(151003..151599) /gene="yadK" /locus_tag="b0136" /gene_synonym="ECK0135; JW0132" /function="putative structural component; Surface structures" /note="putative fimbrial protein" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_414678.1" /db_xref="GI:16128129" /db_xref="ASAP:ABE-0000472" /db_xref="UniProtKB/Swiss-Prot:P37016" /db_xref="EcoGene:EG12325" /db_xref="GeneID:944835" /translation="MHPTQRKLMKRIILFLSLLFCIACPAIAGQDIDLVANVKNSTCK SGISNQGNIDLGVVGVGYFSGNVTPESYQPGGKEFTITVSDCALQGTGDVLNQLHIDF RALSGVMAAGSRQIFANEISSGASNVGVVIFSTQDSANTFNVLNASGGSRSVYPVMSD DMNGSSWKFSTRMQKIDPALSVTSGQLMSHVLVDIYYE" gene complement(151626..152231) /gene="yadL" /locus_tag="b0137" /gene_synonym="ECK0136; JW0133" /db_xref="EcoGene:EG12326" /db_xref="GeneID:944829" CDS complement(151626..152231) /gene="yadL" /locus_tag="b0137" /gene_synonym="ECK0136; JW0133" /function="putative structural component; Surface structures" /note="putative fimbrial protein" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_414679.1" /db_xref="GI:16128130" /db_xref="ASAP:ABE-0000475" /db_xref="UniProtKB/Swiss-Prot:P37017" /db_xref="EcoGene:EG12326" /db_xref="GeneID:944829" /translation="MMTFKNLRYGLSSSVVLAASLFSVLSYAATDSIGLTVITTVEMG TCTATLVNDSDQDISVVDFGDVYISEINAKTKVKTFKLKFKDCAGIPNKKAQIKLTKR ATCEGTANDGAGFANGSTAADKASAVAVEVWSTVTPATGSATQFSCVTPASQEVTIST AANAVVYYPMSARLVVEKNKTVNNVTAGKFSAPATFTVTYN" gene complement(152243..152812) /gene="yadM" /locus_tag="b0138" /gene_synonym="ECK0137; JW0134" /db_xref="EcoGene:EG12327" /db_xref="GeneID:944828" CDS complement(152243..152812) /gene="yadM" /locus_tag="b0138" /gene_synonym="ECK0137; JW0134" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="putative fimbrial-like protein" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_414680.4" /db_xref="GI:90111089" /db_xref="ASAP:ABE-0000477" /db_xref="UniProtKB/Swiss-Prot:P37018" /db_xref="EcoGene:EG12327" /db_xref="GeneID:944828" /translation="MIKTTPHKIVILMGILLSPSVFATDINVEFTATVKATTCNITLT GNNVTNDGNNNYTLRIPKMGLDKIANKTTESQADFKLVASGCSSGISWIDTTLTGNAS SSSPKLIIPQSGDSSSTTSNIGMGFKKRTTDDATFLKPNSAEKIRWSTDEMQPDKGLE MTVALRETDAGQGVPGNFRALATFNFIYQ" gene complement(152829..155426) /gene="htrE" /locus_tag="b0139" /gene_synonym="ECK0138; JW0135" /db_xref="EcoGene:EG11972" /db_xref="GeneID:944819" CDS complement(152829..155426) /gene="htrE" /locus_tag="b0139" /gene_synonym="ECK0138; JW0135" /function="putative membrane; Surface structures" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="probable outer membrane porin protein involved in fimbrial assembly" /codon_start=1 /transl_table=11 /product="putative outer membrane usher protein" /protein_id="NP_414681.1" /db_xref="GI:16128132" /db_xref="ASAP:ABE-0000479" /db_xref="UniProtKB/Swiss-Prot:P33129" /db_xref="EcoGene:EG11972" /db_xref="GeneID:944819" /translation="MTIEYTKNYHHLTRIATFCALLYCNTAFSAELVEYDHTFLMGQN ASNIDLSRYSEGNPAIPGVYDVSVYVNDQPIINQSITFVAIEGKKNAQACITLKNLLQ FHINSPDINNEKAVLLARDETLGNCLNLTEIIPQASVRYDVNDQRLDIDVPQAWVMKN YQNYVDPSLWENGINAAMLSYNLNGYHSETPGRKNESIYAAFNGGMNLGAWRLRASGN YNWMTDSGSNYDFKNRYVQRDIASLRSQLILGESYTTGETFDSVSIRGIRLYSDSRML PPTLASFAPIIHGVANTNAKVTITQGGYKIYETTVPPGAFVIDDLSPSGYGSDLIVTI EESDGSKRTFSQPFSSVVQMLRPGVGRWDISGGQVLKDDIQDEPNLFQASYYYGLNNY LTGYTGIQITDNNYTAGLLGLGLNTSVGAFSFDVTHSNVRIPDDKTYQGQSYRVSWNK LFEETSTSLNIAAYRYSTQNYLGLNDALTLIDEVKHPEQDLEPKSMRNYSRMKNQVTV SINQPLKFEKKDYGSFYLSGSWSDYWASGQNRSNYSIGYSNSTSWGSYSVSAQRSWNE DGDTDDSVYLSFTIPIEKLLGTEQRTSGFQSIDTQISSDFKGNNQLNVSSSGYSDNAR VSYSVNTGYTMNKASKDLSYVGGYASYESPWGTLAGSISANSDNSRQVSLSTDGGFVL HSGGLTFSNDSFSDSDTLAVVQAPGAQGARINYGNSTIDRWGYGVTSALSPYHENRIA LDINDLENDVELKSTSAVAVPRQGSVVFADFETVQGQSAIMNITRSDGKNIPFAADIY DEQGNVIGNVGQGGQAFVRGIEQQGNISIKWLEQSKPVSCLAHYQQSPEAEKIAQSII LNGIRCQIQ" gene complement(155461..156201) /gene="yadV" /locus_tag="b0140" /gene_synonym="ECK0139; ecpD; JW0136" /db_xref="EcoGene:EG11973" /db_xref="GeneID:944859" CDS complement(155461..156201) /gene="yadV" /locus_tag="b0140" /gene_synonym="ECK0139; ecpD; JW0136" /function="putative factor; Surface structures" /GO_component="GO:0019866 - organelle inner membrane" /GO_process="GO:0006457 - protein folding" /note="probable pilin chaperone similar to PapD" /codon_start=1 /transl_table=11 /product="putative periplasmic pilin chaperone" /protein_id="NP_414682.1" /db_xref="GI:16128133" /db_xref="ASAP:ABE-0000482" /db_xref="UniProtKB/Swiss-Prot:P33128" /db_xref="EcoGene:EG11973" /db_xref="GeneID:944859" /translation="MFFNTKHTTALCFVTCMAFSSSSIADIVISGTRVIYKSDQKSVN VRLENKGNNPLLVQSWLDTGDDNAEPGSITVPFTATPPVSRIDAKRGQTIKLMYTAST SLPKDRESVFWFNVLEVPPKPDAEKVANQSLLQLAFRTRIKLFYRPDGLKGNPSEAPL ALKWFWSGSEGKASLRVTNPTPYYVSFSSGDLEASGKRYPIDVKMIAPFSDEVMKVNG LNGKANSAKVHFYAINDFGGAIEGNARL" gene complement(156299..156883) /gene="yadN" /locus_tag="b0141" /gene_synonym="ECK0140; JW0137" /db_xref="EcoGene:EG12328" /db_xref="GeneID:944841" CDS complement(156299..156883) /gene="yadN" /locus_tag="b0141" /gene_synonym="ECK0140; JW0137" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="putative fimbrial-like protein" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_414683.1" /db_xref="GI:16128134" /db_xref="ASAP:ABE-0000487" /db_xref="UniProtKB/Swiss-Prot:P37050" /db_xref="EcoGene:EG12328" /db_xref="GeneID:944841" /translation="MSKKLGFALSGLMLAMVAGTASADMDGGQLNISGLVVDNTCETR VDGGNKDGLILLQTATVGEIDAGVLNDTVGAKAKPFSITVDCSKANPNPGSTAKMTFG SVFFGNSKGTLNNDMSINNPSDGVNIALHNIDGSTIKQVQINNPGDVYTKALDATTKS AVYDFKASYVRAVADQTATAGYVKTNTAYTITYQ" gene complement(157253..157732) /gene="folK" /locus_tag="b0142" /gene_synonym="ECK0141; JW0138" /db_xref="EcoGene:EG11374" /db_xref="GeneID:948792" CDS complement(157253..157732) /gene="folK" /locus_tag="b0142" /gene_synonym="ECK0141; JW0138" /EC_number="2.7.6.3" /function="enzyme; Biosynthesis of cofactors, carriers: Folic acid" /GO_process="GO:0046656 - folic acid biosynthetic process" /note="7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase" /codon_start=1 /transl_table=11 /product="2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase" /protein_id="NP_414684.1" /db_xref="GI:16128135" /db_xref="ASAP:ABE-0000491" /db_xref="UniProtKB/Swiss-Prot:P26281" /db_xref="EcoGene:EG11374" /db_xref="GeneID:948792" /translation="MTVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTP PLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLF GNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELVFPDGEMLRQILHTRAFDKLNKW" gene complement(157729..159126) /gene="pcnB" /locus_tag="b0143" /gene_synonym="ECK0142; JW5808" /db_xref="EcoGene:EG10690" /db_xref="GeneID:947318" CDS complement(157729..159126) /gene="pcnB" /locus_tag="b0143" /gene_synonym="ECK0142; JW5808" /EC_number="2.7.7.19" /function="enzyme; RNA synthesis, modification, DNA transcription" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="poly(A) polymerase" /protein_id="NP_414685.4" /db_xref="GI:162135892" /db_xref="ASAP:ABE-0000493" /db_xref="UniProtKB/Swiss-Prot:P0ABF1" /db_xref="EcoGene:EG10690" /db_xref="GeneID:947318" /translation="MFTRVANFCRKVLSREESEAEQAVARPQVTVIPREQHAISRKDI SENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRLV GRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQR RDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAK LGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLF PTITRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIA QESGLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLL EHPKFRAAYDLLALRAEVERNAELQRLVKWWGEFQVSAPPDQKGMLNELDEEPSPRRR TRRPRKRAPRREGTA" gene complement(159186..160112) /gene="gluQ" /locus_tag="b0144" /gene_synonym="ECK0143; JW5892; yadB" /db_xref="EcoGene:EG11362" /db_xref="GeneID:944846" CDS complement(159186..160112) /gene="gluQ" /locus_tag="b0144" /gene_synonym="ECK0143; JW5892; yadB" /EC_number="6.1.1.-" /function="putative enzyme; Aminoacyl tRNA synthetases, tRNA modification" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="putative tRNA synthetase" /codon_start=1 /transl_table=11 /product="glutamyl-Q tRNA(Asp) synthetase" /protein_id="NP_414686.3" /db_xref="GI:226524698" /db_xref="ASAP:ABE-0000497" /db_xref="UniProtKB/Swiss-Prot:P27305" /db_xref="EcoGene:EG11362" /db_xref="GeneID:944846" /translation="MLPPYFLFKEMTDTQYIGRFAPSPSGELHFGSLIAALGSYLQAR ARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWL HEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGII HADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLF GWKVPDYIHLPLALNPQGAKLSKQNHAPALPKGDPRPVLIAALQFLGQQAEAHWQDFS VEQILQSAVKNWRLTAVPESAIVNSTFSNASC" gene complement(160149..160604) /gene="dksA" /locus_tag="b0145" /gene_synonym="ECK0144; JW0141; msmA" /db_xref="EcoGene:EG10230" /db_xref="GeneID:944850" CDS complement(160149..160604) /gene="dksA" /locus_tag="b0145" /gene_synonym="ECK0144; JW0141; msmA" /function="phenotype; DNA - replication, repair, restriction/modification" /experiment="N-terminus verified by Edman degradation: PMID 9298646,9600841,9740056" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006457 - protein folding" /note="dnaK suppressor protein" /codon_start=1 /transl_table=11 /product="transcriptional regulator of rRNA transcription; DnaK suppressor protein" /protein_id="NP_414687.1" /db_xref="GI:16128138" /db_xref="ASAP:ABE-0000499" /db_xref="UniProtKB/Swiss-Prot:P0ABS1" /db_xref="EcoGene:EG10230" /db_xref="GeneID:944850" /translation="MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRIL EAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKT LKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG" gene complement(160782..161486) /gene="sfsA" /locus_tag="b0146" /gene_synonym="ECK0145; JW0142; sfs; sfs1" /db_xref="EcoGene:EG10949" /db_xref="GeneID:944855" CDS complement(160782..161486) /gene="sfsA" /locus_tag="b0146" /gene_synonym="ECK0145; JW0142; sfs; sfs1" /function="putative regulator; Degradation of small molecules: Carbon compounds" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="probable regulator for maltose metabolism" /codon_start=1 /transl_table=11 /product="sugar fermentation stimulation protein A" /protein_id="NP_414688.1" /db_xref="GI:16128139" /db_xref="ASAP:ABE-0000503" /db_xref="UniProtKB/Swiss-Prot:P0A823" /db_xref="EcoGene:EG10949" /db_xref="GeneID:944855" /translation="MEFSPPLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGC ATPGDTVWYSTSDNTKRKYPHTWELTQSQSGAFICVNTLWANRLTKEAILNESISELS GYSSLKSEVKYGAERSRIDFMLQADSRPDCYIEVKSVTLAENEQGYFPDAVTERGQKH LRELMSVAAEGQRAVIFFAVLHSAITRFSPARHIDEKYAQLLSEAQQRGVEILAYKAE ISAEGMALKKSLPVTL" gene complement(161501..162031) /gene="ligT" /locus_tag="b0147" /gene_synonym="ECK0146; JW5011; yadP" /db_xref="EcoGene:EG12330" /db_xref="GeneID:944848" CDS complement(161501..162031) /gene="ligT" /locus_tag="b0147" /gene_synonym="ECK0146; JW5011; yadP" /EC_number="6.5.1.-" /function="enzyme; tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="2'-5' RNA ligase" /protein_id="NP_414689.4" /db_xref="GI:90111091" /db_xref="ASAP:ABE-0000505" /db_xref="UniProtKB/Swiss-Prot:P37025" /db_xref="EcoGene:EG12330" /db_xref="GeneID:944848" /translation="MSEPQRLFFAIDLPAEIREQIIHWRATHFPPEAGRPVAADNLHL TLAFLGEVSAEKEKALSLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQL ANMLRSQAARSGCFQSNRPFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSFA RGRTRYTPLKRWALTQ" gene 162105..164534 /gene="hrpB" /locus_tag="b0148" /gene_synonym="ECK0147; JW0144; yadO" /db_xref="EcoGene:EG12329" /db_xref="GeneID:944845" CDS 162105..164534 /gene="hrpB" /locus_tag="b0148" /gene_synonym="ECK0147; JW0144; yadO" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication" /note="helicase, ATP-dependent" /codon_start=1 /transl_table=11 /product="putative ATP-dependent helicase" /protein_id="NP_414690.4" /db_xref="GI:162135893" /db_xref="ASAP:ABE-0000510" /db_xref="UniProtKB/Swiss-Prot:P37024" /db_xref="EcoGene:EG12329" /db_xref="GeneID:944845" /translation="MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH PGINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEG VLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD NDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLF LPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAE TSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGISLH LIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPVVNLLAAKRL LQMLGALEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG NSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDG RYQLANGMGAMLDANDALSRHEWLIAPLLLQGSASPDARILLALLVDIDELVQRCPQL VQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVL NWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLAALETWLLPHMTGVHSLRGLKSLD IYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATN PTIAQGRVPLVLELLSPAQRPLQITRDLSDFWKGAYREVQKEMKGRYPKHVWPDDPAN TAPTRRTKKYS" gene 164730..167264 /gene="mrcB" /locus_tag="b0149" /gene_synonym="ECK0148; JW0145; pbpF; ponB" /db_xref="EcoGene:EG10605" /db_xref="GeneID:944843" CDS 164730..167264 /gene="mrcB" /locus_tag="b0149" /gene_synonym="ECK0148; JW0145; pbpF; ponB" /EC_number="2.4.1.129" /EC_number="3.4.-.-" /function="enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0046349 - amino sugar biosynthetic process; GO:0009252 - peptidoglycan biosynthetic process; GO:0042493 - response to drug" /note="peptidoglycan synthetase; penicillin-binding protein 1B" /codon_start=1 /transl_table=11 /product="fused glycosyl transferase and transpeptidase" /protein_id="NP_414691.1" /db_xref="GI:16128142" /db_xref="ASAP:ABE-0000516" /db_xref="UniProtKB/Swiss-Prot:P02919" /db_xref="EcoGene:EG10605" /db_xref="GeneID:944843" /translation="MAGNDREPIGRKGKPTRPVKQKVSRRRYEDDDDYDDYDDYEDEE PMPRKGKGKGKGRKPRGKRGWLWLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQL PAAVYGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFD FPDSKEGQVRARLTFDGDHLATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPR SGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNL FLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYY FGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYD MLSARPLGVQPRGGVISPQPAFMQLVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAA EKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSI GSLAKPATYLTALSQPKIYRLNTWIADAPIALRQPNGQVWSPQNDDRRYSESGRVMLV DALTRSMNVPTVNLGMALGLPAVTETWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQA FQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGT GRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTITWVGRDNNQPTKLYGASGAM SIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGMRILPVWTSDPQSLCQQSE MQQQPSGNPFDQSSQPQQQPQQQPAQQEQKDSDGVAGWIKDMFGSN" repeat_region 167281..167305 /note="REP12 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 167484..169727 /gene="fhuA" /locus_tag="b0150" /gene_synonym="ECK0149; JW0146; T1; tonA" /db_xref="EcoGene:EG10302" /db_xref="GeneID:944856" CDS 167484..169727 /gene="fhuA" /locus_tag="b0150" /gene_synonym="ECK0149; JW0146; T1; tonA" /function="membrane; Outer membrane constituents" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="outer membrane protein receptor for ferrichrome, colicin M, and phages T1, T5, and phi80" /codon_start=1 /transl_table=11 /product="ferrichrome outer membrane transporter" /protein_id="NP_414692.1" /db_xref="GI:16128143" /db_xref="ASAP:ABE-0000520" /db_xref="UniProtKB/Swiss-Prot:P06971" /db_xref="EcoGene:EG10302" /db_xref="GeneID:944856" /translation="MARSKTAQPKHSLRKIAVVVATAVSGMSVYAQAAVEPKEDTITV TAAPAPQESAWGPAATIAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEA LSYTPGVSVGTRGASNTYDHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLE RAEIMRGPVSVLYGKSSPGGLLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDSLD DDGVYSYRLTGLARSANAQQKGSEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGY YGWLPKEGTVEPLPNGKRLPTDFNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLR FAENKTSQNSVYGYGVCSDPANAYSKQCAALAPADKGHYLARKYVVDDEKLQNFSVDT QLQSKFATGDIDHTLLTGVDFMRMRNDINAWFGYDDSVPLLNLYNPVNTDFDFNAKDP ANSGPYRILNKQKQTGVYVQDQAQWDKVLVTLGGRYDWADQESLNRVAGTTDKRDDKQ FTWRGGVNYLFDNGVTPYFSYSESFEPSSQVGKDGNIFAPSKGKQYEVGVKYVPEDRP IVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYT DAEYTTDTTYKGNTPAQVPKHMASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANS FKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDREYVASCFNTYGCFWGAERQVV ATATFRF" gene 169778..170575 /gene="fhuC" /locus_tag="b0151" /gene_synonym="ECK0150; JW0147" /db_xref="EcoGene:EG10304" /db_xref="GeneID:945250" CDS 169778..170575 /gene="fhuC" /locus_tag="b0151" /gene_synonym="ECK0150; JW0147" /function="transport; Transport of small molecules: Cations" /GO_component="GO:0005737 - cytoplasm" /note="ATP-binding component of hydroxymate-dependent iron transport" /codon_start=1 /transl_table=11 /product="iron(3+)-hydroxamate import ABC transporter ATPase" /protein_id="NP_414693.1" /db_xref="GI:16128144" /db_xref="ASAP:ABE-0000522" /db_xref="UniProtKB/Swiss-Prot:P07821" /db_xref="EcoGene:EG10304" /db_xref="GeneID:945250" /translation="MQEYTNHSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIG HNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTV RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM LVAQDSRCLLLDEPTSALDIAHQVDVLSLVHRLSQERGLTVIAVLHDINMAARYCDYL VALRGGEMIAQGTPAEIMRGETLEMIYGIPMGILPHPAGAAPVSFVY" gene 170575..171465 /gene="fhuD" /locus_tag="b0152" /gene_synonym="ECK0151; JW0148" /db_xref="EcoGene:EG10305" /db_xref="GeneID:947510" CDS 170575..171465 /gene="fhuD" /locus_tag="b0152" /gene_synonym="ECK0151; JW0148" /function="transport; Transport of small molecules: Cations" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006826 - iron ion transport" /note="hydroxamate-dependent iron uptake, cytoplasmic membrane component; periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="iron(3+)-hydroxamate import ABC transporter periplasmic binding protein" /protein_id="NP_414694.1" /db_xref="GI:16128145" /db_xref="ASAP:ABE-0000524" /db_xref="UniProtKB/Swiss-Prot:P07822" /db_xref="EcoGene:EG10305" /db_xref="GeneID:947510" /translation="MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWL PVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVW SAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYED FIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWG STAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYG ATLSAMHFVRVLDNAIGGKA" gene 171462..173444 /gene="fhuB" /locus_tag="b0153" /gene_synonym="ECK0152; JW0149" /db_xref="EcoGene:EG10303" /db_xref="GeneID:946890" CDS 171462..173444 /gene="fhuB" /locus_tag="b0153" /gene_synonym="ECK0152; JW0149" /function="transport; Transport of small molecules: Cations" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="iron(3+)-hydroxamate import ABC transporter permease" /protein_id="NP_414695.1" /db_xref="GI:16128146" /db_xref="ASAP:ABE-0000526" /db_xref="UniProtKB/Swiss-Prot:P06972" /db_xref="EcoGene:EG10303" /db_xref="GeneID:946890" /translation="MSKRIALFPALLLALLVIVATALTWMNFSQALPRSQWAQAAWSP DIDVIEQMIFHYSLLPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLG ITVTTLWAIPGAMASQFAAQAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGAI NQLLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLD DGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPR LMLASLIGALILWLSDQIILWLTRVWMEVSTGSVTALIGAPLLLWLLPRLRSISAPDM KVNDRVAAERQHVLAFALAGGVLLLMAVVVALSFGRDAHGWTWASGALLEDLMPWRWP RIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWL LPAGSLGAAVTLLIIMIAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQV LTWISGSTYNATDAQVWRTGIVMVILLAITPLCRRWLTILPLGGDTARAVGMALTPTR IALLLLAACLTATATMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFA DWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR" repeat_region 173504..173588 /note="REP13 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(173602..174882) /gene="hemL" /locus_tag="b0154" /gene_synonym="ECK0153; gsa?; JW0150; popC" /db_xref="EcoGene:EG10432" /db_xref="GeneID:946892" CDS complement(173602..174882) /gene="hemL" /locus_tag="b0154" /gene_synonym="ECK0153; gsa?; JW0150; popC" /EC_number="5.4.3.8" /function="enzyme; Biosynthesis of cofactors, carriers: Heme, porphyrin" /codon_start=1 /transl_table=11 /product="glutamate-1-semialdehyde aminotransferase (aminomutase)" /protein_id="NP_414696.1" /db_xref="GI:16128147" /db_xref="ASAP:ABE-0000529" /db_xref="UniProtKB/Swiss-Prot:P23893" /db_xref="EcoGene:EG10432" /db_xref="GeneID:946892" /translation="MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYL YDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTEL VPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTL GQPNSPGVPADFAKYTLTCTYNDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPLPE FLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAF GGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLDELTTRLAEG LLEAAEEAGIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVY LAPSAFEAGFMSVAHSMEDINNTIDAARRVFAKL" gene 175107..176528 /gene="clcA" /locus_tag="b0155" /gene_synonym="ECK0154; eriC; JW5012; yadQ" /db_xref="EcoGene:EG12331" /db_xref="GeneID:946715" CDS 175107..176528 /gene="clcA" /locus_tag="b0155" /gene_synonym="ECK0154; eriC; JW5012; yadQ" /function="transport; Not classified" /note="putative channel transporter" /codon_start=1 /transl_table=11 /product="H(+)/Cl(-) exchange transporter" /protein_id="NP_414697.1" /db_xref="GI:16128148" /db_xref="ASAP:ABE-0000533" /db_xref="UniProtKB/Swiss-Prot:P37019" /db_xref="EcoGene:EG12331" /db_xref="GeneID:946715" /translation="MKTDTPSLETPQAARLRRRQLIRQLLERDKTPLAILFMAAVVGT LVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAP EAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGR MVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAV FIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGM QDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLV FIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIA GMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILA RTLAKQEAEQLARSKAASASENT" gene 176610..176954 /gene="erpA" /locus_tag="b0156" /gene_synonym="ECK0155; JW0152; yadR" /db_xref="EcoGene:EG12332" /db_xref="GeneID:944857" CDS 176610..176954 /gene="erpA" /locus_tag="b0156" /gene_synonym="ECK0155; JW0152; yadR" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster insertion protein" /protein_id="NP_414698.1" /db_xref="GI:16128149" /db_xref="ASAP:ABE-0000538" /db_xref="UniProtKB/Swiss-Prot:P0ACC3" /db_xref="EcoGene:EG12332" /db_xref="GeneID:944857" /translation="MSDDVALPLEFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSG FQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNA KSTCGCGSSFSI" repeat_region 176969..176987 /note="REP14 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(177001..177624) /gene="yadS" /locus_tag="b0157" /gene_synonym="ECK0156; JW0153" /db_xref="EcoGene:EG12333" /db_xref="GeneID:949062" CDS complement(177001..177624) /gene="yadS" /locus_tag="b0157" /gene_synonym="ECK0156; JW0153" /codon_start=1 /transl_table=11 /product="UPF0126 family inner membrane protein" /protein_id="NP_414699.1" /db_xref="GI:16128150" /db_xref="ASAP:ABE-0000540" /db_xref="UniProtKB/Swiss-Prot:P0AFP0" /db_xref="EcoGene:EG12333" /db_xref="GeneID:949062" /translation="MLVYWLDIVGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGG TIRDMALDHGPVFWVKDPTDLVVAMVTSMLTIVLVRQPRRLPKWMLPVLDAVGLAVFV GIGVNKAFNAEAGPLIAVCMGVITGVGGGIIRDVLAREIPMILRTEIYATACIIGGIV HATAYYTFSVPLETASMMGMVVTLLIRLAAIRWHLKLPTFALDENGR" gene complement(177662..178462) /gene="btuF" /locus_tag="b0158" /gene_synonym="ECK0157; JW0154; yadT" /db_xref="EcoGene:EG12334" /db_xref="GeneID:947574" CDS complement(177662..178462) /gene="btuF" /locus_tag="b0158" /gene_synonym="ECK0157; JW0154; yadT" /GO_component="GO:0042597 - periplasmic space" /codon_start=1 /transl_table=11 /product="vitamin B12 ABC transporter periplasmic binding protein" /protein_id="NP_414700.1" /db_xref="GI:16128151" /db_xref="ASAP:ABE-0000542" /db_xref="UniProtKB/Swiss-Prot:P37028" /db_xref="EcoGene:EG12334" /db_xref="GeneID:947574" /translation="MAKSLFRALVALSFLAPLWLNAAPRVITLSPANTELAFAAGITP VGVSSYSDYPPQAQKIEQVSTWQGMNLERIVALKPDLVIAWRGGNAERQVDQLASLGI KVMWVDATSIEQIANALRQLAPWSPQPDKAEQAAQSLLDQYAQLKAQYADKPKKRVFL QFGINPPFTSGKESIQNQVLEVCGGENIFKDSRVPWPQVSREQVLARSPQAIVITGGP DQIPKIKQYWGEQLKIPVIPLTSDWFERASPRIILAAQQLCNALSQVD" gene complement(178455..179153) /gene="mtn" /locus_tag="b0159" /gene_synonym="ECK0158; JW0155; mtnN; pfs; yadA" /db_xref="EcoGene:EG11090" /db_xref="GeneID:948542" CDS complement(178455..179153) /gene="mtn" /locus_tag="b0159" /gene_synonym="ECK0158; JW0155; mtnN; pfs; yadA" /EC_number="3.2.2.16" /EC_number="3.2.2.9" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase" /protein_id="NP_414701.1" /db_xref="GI:16128152" /db_xref="ASAP:ABE-0000545" /db_xref="UniProtKB/Swiss-Prot:P0AF12" /db_xref="EcoGene:EG11090" /db_xref="GeneID:948542" /translation="MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVA LLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADV TAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAK IRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQS SLMVESLVQKLAHG" gene 179237..180754 /gene="dgt" /locus_tag="b0160" /gene_synonym="ECK0159; JW0156; optA" /db_xref="EcoGene:EG10225" /db_xref="GeneID:947177" CDS 179237..180754 /gene="dgt" /locus_tag="b0160" /gene_synonym="ECK0159; JW0156; optA" /EC_number="3.1.5.1" /function="enzyme; Central intermediary metabolism: Nucleotide hydrolysis" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="deoxyguanosine triphosphate triphosphohydrolase" /protein_id="NP_414702.1" /db_xref="GI:16128153" /db_xref="ASAP:ABE-0000548" /db_xref="UniProtKB/Swiss-Prot:P15723" /db_xref="EcoGene:EG10225" /db_xref="GeneID:947177" /translation="MAQIDFRKKINWHRRYRSPQGVKTEHEILRIFESDRGRIINSPA IRRLQQKTQVFPLERNAAVRTRLTHSMEVQQVGRYIAKEILSRLKELKLLEAYGLDEL TGPFESIVEMSCLMHDIGNPPFGHFGEAAINDWFRQRLHPEDAESQPLTDDRCSVAAL RLRDGEEPLNELRRKIRQDLCHFEGNAQGIRLVHTLMRMNLTWAQVGGILKYTRPAWW RGETPETHHYLMKKPGYYLSEEAYIARLRKELNLALYSRFPLTWIMEAADDISYCVAD LEDAVEKRIFTVEQLYHHLHEAWGQHEKGSLFSLVVENAWEKSRSNSLSRSTEDQFFM YLRVNTLNKLVPYAAQRFIDNLPAIFAGTFNHALLEDASECSDLLKLYKNVAVKHVFS HPDVERLELQGYRVISGLLEIYRPLLSLSLSDFTELVEKERVKRFPIESRLFHKLSTR HRLAYVEAVSKLPSDSPEFPLWEYYYRCRLLQDYISGMTDLYAWDEYRRLMAVEQ" gene 180884..182308 /gene="degP" /locus_tag="b0161" /gene_synonym="ECK0160; htrA; JW0157; ptd" /db_xref="EcoGene:EG10463" /db_xref="GeneID:947139" CDS 180884..182308 /gene="degP" /locus_tag="b0161" /gene_synonym="ECK0160; htrA; JW0157; ptd" /EC_number="3.4.21.-" /function="enzyme; Degradation of proteins, peptides, glycopeptides" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0009266 - response to temperature stimulus" /note="periplasmic serine protease Do; heat shock protein HtrA" /codon_start=1 /transl_table=11 /product="serine endoprotease (protease Do), membrane-associated" /protein_id="NP_414703.1" /db_xref="GI:16128154" /db_xref="ASAP:ABE-0000551" /db_xref="UniProtKB/Swiss-Prot:P0C0V0" /db_xref="EcoGene:EG10463" /db_xref="GeneID:947139" /translation="MKKTTLALSALALSLGLALSPLSATAAETSSATTAQQMPSLAPM LEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGN GGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRS DIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNA ENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNL TSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGD VITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSS IFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKV LDSKPSVLALNIQRGDSTIYLLMQ" gene 182463..183620 /gene="cdaR" /locus_tag="b0162" /gene_synonym="ECK0161; JW5013; sdaR; yaeG" /db_xref="EcoGene:EG12335" /db_xref="GeneID:944860" CDS 182463..183620 /gene="cdaR" /locus_tag="b0162" /gene_synonym="ECK0161; JW5013; sdaR; yaeG" /function="regulator; Not classified" /codon_start=1 /transl_table=11 /product="carbohydrate diacid regulon transcriptional regulator; autoregulator" /protein_id="NP_414704.4" /db_xref="GI:90111093" /db_xref="ASAP:ABE-0000554" /db_xref="UniProtKB/Swiss-Prot:P37047" /db_xref="EcoGene:EG12335" /db_xref="GeneID:944860" /translation="MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERI GELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLR KYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDL NQPRVVAIVEVDSGQLGVDSAMAELQQLQNALTTPERNNLVAIVSLTEMVVLKPALNS FGRWDAEDHRKRVEQLITRMKEYGQLRFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQ RMPESRCYFYQDLMLPVLLDSLRGDWQANELARPLARLKTMDNNGLLRRTLAAWFRHN VQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEER" gene complement(183709..184095) /gene="yaeH" /locus_tag="b0163" /gene_synonym="ECK0162; JW0159" /db_xref="EcoGene:EG12336" /db_xref="GeneID:947044" CDS complement(183709..184095) /gene="yaeH" /locus_tag="b0163" /gene_synonym="ECK0162; JW0159" /function="putative structure; Not classified" /note="putative structural protein" /codon_start=1 /transl_table=11 /product="UPF0325 family protein" /protein_id="NP_414705.1" /db_xref="GI:16128156" /db_xref="ASAP:ABE-0000556" /db_xref="UniProtKB/Swiss-Prot:P62768" /db_xref="EcoGene:EG12336" /db_xref="GeneID:947044" /translation="MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDKGEFFAK SVKFKYPRQRKTVVADGVGQGYKEVQEISPNLRYIIDELDQICQRDRSEVDLKRKILD DLRHLESVVTNKISEIEADLEKLTRK" gene complement(184257..185069) /gene="yaeI" /locus_tag="b0164" /gene_synonym="ECK0163; JW5014" /db_xref="EcoGene:EG12337" /db_xref="GeneID:945002" CDS complement(184257..185069) /gene="yaeI" /locus_tag="b0164" /gene_synonym="ECK0163; JW5014" /codon_start=1 /transl_table=11 /product="phosphodiesterase with model substrate bis-pNPP" /protein_id="NP_414706.2" /db_xref="GI:90111094" /db_xref="ASAP:ABE-0000559" /db_xref="UniProtKB/Swiss-Prot:P37049" /db_xref="EcoGene:EG12337" /db_xref="GeneID:945002" /translation="MISRRRFLQATAATIATSSGFGYMHYCEPGWFELIRHRLAFFKD NAAPFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMSLNFSAFS DVLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSAGITVLFNQATVIATPNRQFE LVGTGDLWAGQCKPPPASEANLPRLVLAHNPDSKEVMRDEPWDLMLCGHTHGGQLRVP LVGEPFAPVEDKRYVAGLNAFGERHIYTTRGVGSLYGLRLNCRPEVTMLELV" gene complement(185123..185947) /gene="dapD" /locus_tag="b0166" /gene_synonym="ECK0164; JW0161; ssa" /db_xref="EcoGene:EG10207" /db_xref="GeneID:944862" CDS complement(185123..185947) /gene="dapD" /locus_tag="b0166" /gene_synonym="ECK0164; JW0161; ssa" /EC_number="2.3.1.117" /function="enzyme; Amino acid biosynthesis: Lysine" /experiment="N-terminus verified by Edman degradation: PMID 8740179,9298646" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009089 - lysine biosynthetic process via diaminopimelate" /codon_start=1 /transl_table=11 /product="2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase" /protein_id="NP_414708.1" /db_xref="GI:16128159" /db_xref="ASAP:ABE-0000565" /db_xref="UniProtKB/Swiss-Prot:P0A9D8" /db_xref="EcoGene:EG10207" /db_xref="GeneID:944862" /translation="MQQLQNIIETAFERRAEITPANADTVTREAVNQVIALLDSGALR VAEKIDGQWVTHQWLKKAVLLSFRINDNQVIEGAESRYFDKVPMKFADYDEARFQKEG FRVVPPAAVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSG GVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRE TGEIHYGRVPAGSVVVSGNLPSKDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID" gene complement(185978..188650) /gene="glnD" /locus_tag="b0167" /gene_synonym="ECK0165; JW0162" /db_xref="EcoGene:EG11411" /db_xref="GeneID:944863" CDS complement(185978..188650) /gene="glnD" /locus_tag="b0167" /gene_synonym="ECK0165; JW0162" /EC_number="2.7.7.59" /function="enzyme; Amino acid biosynthesis: Glutamine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006542 - glutamine biosynthetic process; GO:0006807 - nitrogen compound metabolic process; GO:0006464 - protein modification process" /note="protein PII; uridylyltransferase acts on regulator of glnA" /codon_start=1 /transl_table=11 /product="uridylyltransferase" /protein_id="NP_414709.1" /db_xref="GI:16128160" /db_xref="ASAP:ABE-0000568" /db_xref="UniProtKB/Swiss-Prot:P27249" /db_xref="EcoGene:EG11411" /db_xref="GeneID:944863" /translation="MNTLPEQYANTALPTLPGQPQNPCVWPRDELTVGGIKAHIDTFQ RWLGDAFDNGISAEQLIEARTEFIDQLLQRLWIEAGFSQIADLALVAVGGYGRGELHP LSDVDLLILSRKKLPDDQAQKVGELLTLLWDVKLEVGHSVRTLEECMLEGLSDLTVAT NLIESRLLIGDVALFLELQKHIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPD IKSSPGGLRDIHTLQWVARRHFGATSLDEMVGFGFLTSAERAELNECLHILWRIRFAL HLVVSRYDNRLLFDRQLSVAQRLNYSGEGNEPVERMMKDYFRVTRRVSELNQMLLQLF DEAILALPADEKPRPIDDEFQLRGTLIDLRDETLFMRQPEAILRMFYTMVHNSAITGI YSTTLRQLRHARRHLQQPLCNIPEARKLFLSILRHPGAVRRGLLPMHRHSVLGAYMPQ WSHIVGQMQFDLFHAYTVDEHTIRVMLKLESFASEETRQRHPLCVDVWPRLPSTELIF IAALFHDIAKGRGGDHSILGAQDVVHFAELHGLNSRETQLVAWLVRQHLLMSVTAQRR DIQDPEVIKQFAEEVQTENRLRYLVCLTVADICATNETLWNSWKQSLLRELYFATEKQ LRRGMQNTPDMRERVRHHQLQALALLRMDNIDEEALHQIWSRCRANYFVRHSPNQLAW HARHLLQHDLSKPLVLLSPQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQI FTTRDGMAMDTFIVLEPDGNPLSADRHEVIRFGLEQVLTQSSWQPPQPRRQPAKLRHF TVETEVTFLPTHTDRKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVED LFIIATADRRALNNELQQEVHQRLTEALNPNDKG" gene complement(188712..189506) /gene="map" /locus_tag="b0168" /gene_synonym="ECK0166; JW0163; pepM" /db_xref="EcoGene:EG10570" /db_xref="GeneID:947882" CDS complement(188712..189506) /gene="map" /locus_tag="b0168" /gene_synonym="ECK0166; JW0163; pepM" /EC_number="3.4.11.18" /function="enzyme; Proteins - translation and modification" /GO_process="GO:0006457 - protein folding" /codon_start=1 /transl_table=11 /product="methionine aminopeptidase" /protein_id="NP_414710.1" /db_xref="GI:16128161" /db_xref="ASAP:ABE-0000571" /db_xref="UniProtKB/Swiss-Prot:P0AE18" /db_xref="EcoGene:EG10570" /db_xref="GeneID:947882" /translation="MAISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRI CNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIK DGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAE GFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMK DGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIISHDE" gene 189712..189847 /gene="tff" /locus_tag="b4414" /gene_synonym="ECK0167; JWR0225; t44" /db_xref="EcoGene:EG31135" /db_xref="GeneID:2847773" ncRNA 189712..189847 /ncRNA_class="other" /gene="tff" /locus_tag="b4414" /gene_synonym="ECK0167; JWR0225; t44" /product="novel sRNA, function unknown" /note="identified in a large scale screen" /db_xref="ASAP:ABE-0047239" /db_xref="EcoGene:EG31135" /db_xref="GeneID:2847773" gene 189874..190599 /gene="rpsB" /locus_tag="b0169" /gene_synonym="ECK0168; JW0164" /db_xref="EcoGene:EG10901" /db_xref="GeneID:947874" CDS 189874..190599 /gene="rpsB" /locus_tag="b0169" /gene_synonym="ECK0168; JW0164" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S2" /protein_id="NP_414711.1" /db_xref="GI:16128162" /db_xref="ASAP:ABE-0000575" /db_xref="UniProtKB/Swiss-Prot:P0A7V0" /db_xref="EcoGene:EG10901" /db_xref="GeneID:947874" /translation="MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLE KTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLT NWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDA LFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVA ATVREGRSQDLASQAEESFVEAE" gene 190857..191708 /gene="tsf" /locus_tag="b0170" /gene_synonym="ECK0169; JW0165" /db_xref="EcoGene:EG11033" /db_xref="GeneID:944866" CDS 190857..191708 /gene="tsf" /locus_tag="b0170" /gene_synonym="ECK0169; JW0165" /function="factor; Proteins - translation and modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="translation elongation factor EF-Ts" /protein_id="NP_414712.1" /db_xref="GI:16128163" /db_xref="ASAP:ABE-0000579" /db_xref="UniProtKB/Swiss-Prot:P0A6P1" /db_xref="EcoGene:EG11033" /db_xref="GeneID:944866" /translation="MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKS GAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVA GKITDVEVLKAQFEEERVALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKG ADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEG RMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEV AAMSKQS" gene 191855..192580 /gene="pyrH" /locus_tag="b0171" /gene_synonym="ECK0170; JW0166; smbA; umk" /db_xref="EcoGene:EG11539" /db_xref="GeneID:944989" CDS 191855..192580 /gene="pyrH" /locus_tag="b0171" /gene_synonym="ECK0170; JW0166; smbA; umk" /EC_number="2.7.4.-" /function="enzyme; Central intermediary metabolism: Nucleotide interconversions" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="uridylate kinase" /protein_id="NP_414713.1" /db_xref="GI:16128164" /db_xref="ASAP:ABE-0000582" /db_xref="UniProtKB/Swiss-Prot:P0A7E9" /db_xref="EcoGene:EG11539" /db_xref="GeneID:944989" /translation="MATNAKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKEL VELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNA RLMSAIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADV VLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVF NMNKPGALRRVVMGEKEGTLITE" gene 192872..193429 /gene="frr" /locus_tag="b0172" /gene_synonym="ECK0171; JW0167; rrf" /db_xref="EcoGene:EG10335" /db_xref="GeneID:946122" CDS 192872..193429 /gene="frr" /locus_tag="b0172" /gene_synonym="ECK0171; JW0167; rrf" /function="factor; Proteins - translation and modification" /experiment="N-terminus verified by Edman degradation: PMID 2684966,8740179,9298646" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006412 - translation; GO:0009386 - translational attenuation" /note="ribosome releasing factor" /codon_start=1 /transl_table=11 /product="ribosome recycling factor" /protein_id="NP_414714.1" /db_xref="GI:16128165" /db_xref="ASAP:ABE-0000588" /db_xref="UniProtKB/Swiss-Prot:P0A805" /db_xref="EcoGene:EG10335" /db_xref="GeneID:946122" /translation="MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEY YGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPL PPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDV QKLTDAAIKKIEAALADKEAELMQF" gene 193521..194717 /gene="dxr" /locus_tag="b0173" /gene_synonym="ECK0172; ispC; JW0168; yaeM" /db_xref="EcoGene:EG12715" /db_xref="GeneID:945019" CDS 193521..194717 /gene="dxr" /locus_tag="b0173" /gene_synonym="ECK0172; ispC; JW0168; yaeM" /EC_number="1.1.1.267" /function="putative transport; Not classified" /codon_start=1 /transl_table=11 /product="1-deoxy-D-xylulose 5-phosphate reductoisomerase" /protein_id="NP_414715.1" /db_xref="GI:16128166" /db_xref="ASAP:ABE-0000592" /db_xref="UniProtKB/Swiss-Prot:P45568" /db_xref="EcoGene:EG12715" /db_xref="GeneID:945019" /translation="MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVE QCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIV GAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSL PQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKI SVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDM RTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTA LNAANEITVAAFLAQQIRFTDIAALNLSVLEKMDMREPQCVDDVLSVDANAREVARKE VMRLAS" gene 194903..195664 /gene="ispU" /locus_tag="b0174" /gene_synonym="ECK0173; JW0169; rth; uppS; yaeS" /db_xref="EcoGene:EG13329" /db_xref="GeneID:944874" CDS 194903..195664 /gene="ispU" /locus_tag="b0174" /gene_synonym="ECK0173; JW0169; rth; uppS; yaeS" /EC_number="2.5.1.31" /experiment="N-terminus verified by Edman degradation: PMID 9882662" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /note="undecaprenyl pyrophosphate synthetase (di-trans,poly-cis-decaprenylcistransferase)" /codon_start=1 /transl_table=11 /product="undecaprenyl pyrophosphate synthase" /protein_id="NP_414716.1" /db_xref="GI:16128167" /db_xref="ASAP:ABE-0000595" /db_xref="UniProtKB/Swiss-Prot:P60472" /db_xref="EcoGene:EG13329" /db_xref="GeneID:944874" /translation="MMLSATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHK AGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHR HNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAE KVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTD VLWPDFDEQDFEGALNAFANRERRFGGTEPGDETA" gene 195677..196534 /gene="cdsA" /locus_tag="b0175" /gene_synonym="ECK0174; JW5810" /db_xref="EcoGene:EG10139" /db_xref="GeneID:944876" CDS 195677..196534 /gene="cdsA" /locus_tag="b0175" /gene_synonym="ECK0174; JW5810" /EC_number="2.7.7.41" /function="enzyme; Fatty acid and phosphatidic acid biosynthesis" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0008654 - phospholipid biosynthetic process" /note="CDP-diglyceride synthetase" /codon_start=1 /transl_table=11 /product="CDP-diglyceride synthase" /protein_id="NP_414717.2" /db_xref="GI:90111095" /db_xref="ASAP:ABE-0000600" /db_xref="UniProtKB/Swiss-Prot:P0ABG1" /db_xref="EcoGene:EG10139" /db_xref="GeneID:944876" /translation="MLKYRLISAFVLIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWG QLSGFTTRSQRVWLAVLCGLLLALMLFLLPEYHRNIHQPLVEISLWASLGWWIVALLL VLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDENHYSGAIWLLYVMIL VWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLDVAPV TLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFAC LLLLVFRTL" gene 196546..197898 /gene="rseP" /locus_tag="b0176" /gene_synonym="ecfE; ECK0175; JW0171; yaeL" /db_xref="EcoGene:EG12436" /db_xref="GeneID:944871" CDS 196546..197898 /gene="rseP" /locus_tag="b0176" /gene_synonym="ecfE; ECK0175; JW0171; yaeL" /EC_number="3.4.24.-" /codon_start=1 /transl_table=11 /product="inner membrane zinc RIP metalloprotease; RpoE activator, by degrading RseA; cleaved signal peptide endoprotease" /protein_id="NP_414718.1" /db_xref="GI:16128169" /db_xref="ASAP:ABE-0000603" /db_xref="UniProtKB/Swiss-Prot:P0AEH1" /db_xref="EcoGene:EG12436" /db_xref="GeneID:944871" /translation="MLSFLWDLASFIVALGVLITVHEFGHFWVARRCGVRVERFSIGF GKALWRRTDKLGTEYVIALIPLGGYVKMLDERAEPVVPELRHHAFNNKSVGQRAAIIA AGPVANFIFAIFAYWLVFIIGVPGVRPVVGEIAANSIAAEAQIAPGTELKAVDGIETP DWDAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLRHWAFEPDKEDPVSSLGIRPR GPQIEPVLENVQPNSAASKAGLQAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEI ERQGSPLSLTLIPESKPGNGKAIGFVGIEPKVIPLPDEYKVVRQYGPFNAIVEATDKT WQLMKLTVSMLGKLITGDVKLNNLSGPISIAKGAGMTAELGVVYYLPFLALISVNLGI INLFPLPVLDGGHLLFLAIEKIKGGPVSERVQDFCYRIGSILLVLLMGLALFNDFSRL " gene 197928..200360 /gene="bamA" /locus_tag="b0177" /gene_synonym="ecfK; ECK0176; JW0172; omp85; yaeT; yzzN; yzzY" /db_xref="EcoGene:EG12676" /db_xref="GeneID:944870" CDS 197928..200360 /gene="bamA" /locus_tag="b0177" /gene_synonym="ecfK; ECK0176; JW0172; omp85; yaeT; yzzN; yzzY" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative outer membrane antigen" /codon_start=1 /transl_table=11 /product="BamABCDE complex OM biogenesis outer membrane pore-forming assembly factor" /protein_id="NP_414719.1" /db_xref="GI:16128170" /db_xref="ASAP:ABE-0000605" /db_xref="UniProtKB/Swiss-Prot:P0A940" /db_xref="EcoGene:EG12676" /db_xref="GeneID:944870" /translation="MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALL SMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGN KSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPR NRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQK LAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGN LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKT VKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRL GFFETVDTDTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWL GTGYAVGINGTKNDYQTYAELSVTNPYFTVDGVSLGGRLFYNDFQADDADLSDYTNKS YGTDVTLGFPINEYNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGEHPSTSDQDNSFK TDDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVTLDTATYVPIDDD HKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYFPHQASNY DPDYDYECATQDGAKDLCKSDDAVGGNAMAVASLEFITPTPFISDKYANSVRTSFFWD MGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDK AEQFQFNIGKTW" gene 200482..200967 /gene="skp" /locus_tag="b0178" /gene_synonym="ECK0177; hlpA; JW0173; ompH" /db_xref="EcoGene:EG10455" /db_xref="GeneID:944861" CDS 200482..200967 /gene="skp" /locus_tag="b0178" /gene_synonym="ECK0177; hlpA; JW0173; ompH" /function="factor; Basic proteins - synthesis, modification" /GO_component="GO:0009274 - peptidoglycan-based cell wall; GO:0042597 - periplasmic space" /GO_process="GO:0006457 - protein folding" /note="periplasmic molecular chaperone for outer membrane proteins" /codon_start=1 /transl_table=11 /product="periplasmic chaperone" /protein_id="NP_414720.1" /db_xref="GI:16128171" /db_xref="ASAP:ABE-0000608" /db_xref="UniProtKB/Swiss-Prot:P0AEU7" /db_xref="EcoGene:EG10455" /db_xref="GeneID:944861" /translation="MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQQVAQKTGVSN TLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFE QDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQV K" gene 200971..201996 /gene="lpxD" /locus_tag="b0179" /gene_synonym="ECK0178; firA; JW0174; omsA; ssc" /db_xref="EcoGene:EG10316" /db_xref="GeneID:944882" CDS 200971..201996 /gene="lpxD" /locus_tag="b0179" /gene_synonym="ECK0178; firA; JW0174; omsA; ssc" /EC_number="2.3.1.-" /function="enzyme; Surface polysaccharides & antigens" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009245 - lipid A biosynthetic process" /codon_start=1 /transl_table=11 /product="UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase" /protein_id="NP_414721.1" /db_xref="GI:16128172" /db_xref="ASAP:ABE-0000610" /db_xref="UniProtKB/Swiss-Prot:P21645" /db_xref="EcoGene:EG10316" /db_xref="GeneID:944882" /translation="MPSIRLADLAQQLDAELHGDGDIVITGVASMQSAQTGHITFMVN PKYREHLGLCQASAVVMTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAP SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTI YHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRG ALDDTIIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGH MEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDDMSKRLKSLE RKVNQQD" gene 202101..202556 /gene="fabZ" /locus_tag="b0180" /gene_synonym="ECK0179; JW0175; sabA; sefA; sfhC; yaeA" /db_xref="EcoGene:EG11284" /db_xref="GeneID:944888" CDS 202101..202556 /gene="fabZ" /locus_tag="b0180" /gene_synonym="ECK0179; JW0175; sabA; sefA; sfhC; yaeA" /EC_number="4.2.1.-" /function="enzyme; Fatty acid and phosphatidic acid biosynthesis" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="(3R)-hydroxymyristol acyl carrier protein dehydratase" /protein_id="NP_414722.1" /db_xref="GI:16128173" /db_xref="ASAP:ABE-0000613" /db_xref="UniProtKB/Swiss-Prot:P0A6Q6" /db_xref="EcoGene:EG11284" /db_xref="GeneID:944888" /translation="MTTNTHTLQIEEILELLPHRFPFLLVDRVLDFEEGRFLRAVKNV SVNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFK RPVVPGDQMIMEVTFEKTRRGLTRFKGVALVDGKVVCEATMMCARSREA" gene 202560..203348 /gene="lpxA" /locus_tag="b0181" /gene_synonym="ECK0180; JW0176" /db_xref="EcoGene:EG10545" /db_xref="GeneID:944849" CDS 202560..203348 /gene="lpxA" /locus_tag="b0181" /gene_synonym="ECK0180; JW0176" /EC_number="2.3.1.129" /function="enzyme; Surface polysaccharides & antigens" /experiment="N-terminus verified by Edman degradation: PMID 8366124" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009245 - lipid A biosynthetic process" /note="UDP-N-acetylglucosamine acetyltransferase; lipid A biosynthesis" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine acetyltransferase" /protein_id="NP_414723.1" /db_xref="GI:16128174" /db_xref="ASAP:ABE-0000618" /db_xref="UniProtKB/Swiss-Prot:P0A722" /db_xref="EcoGene:EG10545" /db_xref="GeneID:944849" /translation="MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVL KSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGT VQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVH QFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNA YKLIYRSGKTLDEVKPEIAELAETYPEVKAFTDFFARSTRGLIR" gene 203348..204496 /gene="lpxB" /locus_tag="b0182" /gene_synonym="ECK0181; JW0177; pgsB" /db_xref="EcoGene:EG10546" /db_xref="GeneID:944838" CDS 203348..204496 /gene="lpxB" /locus_tag="b0182" /gene_synonym="ECK0181; JW0177; pgsB" /EC_number="2.4.1.182" /function="enzyme; Macromolecule metabolism: Lipopolysaccharide" /experiment="N-terminus verified by Edman degradation: PMID 3049593" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009245 - lipid A biosynthetic process" /note="tetraacyldisaccharide-1-P; lipid A biosynthesis, penultimate step" /codon_start=1 /transl_table=11 /product="tetraacyldisaccharide-1-P synthase" /protein_id="NP_414724.1" /db_xref="GI:16128175" /db_xref="ASAP:ABE-0000620" /db_xref="UniProtKB/Swiss-Prot:P10441" /db_xref="EcoGene:EG10546" /db_xref="GeneID:944838" /translation="MTEQRPLTIALVAGETSGDILGAGLIRALKEHVPNARFVGVAGP RMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTKRFGELKPDVFVGIDAPDF NITLEGNLKKQGIKTIHYVSPSVWAWRQKRVFKIGRATDLVLAFLPFEKAFYDKYNVP CRFIGHTMADAMPLDPDKNAARDVLGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQL LRQTYPDLEIVVPLVNAKRREQFERIKAEVAPDLSVHLLDGMGREAMVASDAALLASG TAALECMLAKCPMVVGYRMKPFTFWLAKRLVKTDYVSLPNLLAGRELVKELLQEECEP QKLAAALLPLLANGKTSHAMHDTFRELHQQIRCNADEQAAQAVLELAQ" gene 204493..205089 /gene="rnhB" /locus_tag="b0183" /gene_synonym="ECK0182; JW0178" /db_xref="EcoGene:EG10861" /db_xref="GeneID:944852" CDS 204493..205089 /gene="rnhB" /locus_tag="b0183" /gene_synonym="ECK0182; JW0178" /EC_number="3.1.26.4" /function="enzyme; Degradation of RNA" /experiment="N-terminus verified by Edman degradation: PMID 2172991" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006401 - RNA catabolic process" /note="RNAse HII, degrades RNA of DNA-RNA hybrids" /codon_start=1 /transl_table=11 /product="ribonuclease HII, degrades RNA of DNA-RNA hybrids" /protein_id="NP_414725.1" /db_xref="GI:16128176" /db_xref="ASAP:ABE-0000622" /db_xref="UniProtKB/Swiss-Prot:P10442" /db_xref="EcoGene:EG10861" /db_xref="GeneID:944852" /translation="MIEFVYPHTQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLN DSKKLSEKRRLALYEEIKEKALSWSLGRAEPHEIDELNILHATMLAMQRAVAGLHIAP EYVLIDGNRCPKLPMPAMAVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFA QHKGYPTAFHLEKLAEHGATEHHRRSFGPVKRALGLAS" gene 205126..208608 /gene="dnaE" /locus_tag="b0184" /gene_synonym="ECK0183; JW0179; polC; sdgC" /db_xref="EcoGene:EG10238" /db_xref="GeneID:944877" CDS 205126..208608 /gene="dnaE" /locus_tag="b0184" /gene_synonym="ECK0183; JW0179; polC; sdgC" /EC_number="2.7.7.7" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication" /note="DNA polymerase III, alpha subunit" /codon_start=1 /transl_table=11 /product="DNA polymerase III alpha subunit" /protein_id="NP_414726.1" /db_xref="GI:16128177" /db_xref="ASAP:ABE-0000624" /db_xref="UniProtKB/Swiss-Prot:P10443" /db_xref="EcoGene:EG10238" /db_xref="GeneID:944877" /translation="MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDF TNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLIS KAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEE HFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVA IHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEY FLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQ MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFL NPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG HPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNA GKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIN WALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYG IILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAEL AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVV GLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKG GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKE IERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVML FTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISL TDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDL RGLIGSEQVELEFD" gene 208621..209580 /gene="accA" /locus_tag="b0185" /gene_synonym="ECK0184; JW0180" /db_xref="EcoGene:EG11647" /db_xref="GeneID:944895" CDS 208621..209580 /gene="accA" /locus_tag="b0185" /gene_synonym="ECK0184; JW0180" /EC_number="6.4.1.2" /function="enzyme; Fatty acid and phosphatidic acid biosynthesis" /GO_component="GO:0005737 - cytoplasm" /note="acetylCoA carboxylase, carboxytransferase component, alpha subunit" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase, carboxytransferase, alpha subunit" /protein_id="NP_414727.1" /db_xref="GI:16128178" /db_xref="ASAP:ABE-0000630" /db_xref="UniProtKB/Swiss-Prot:P0ABD5" /db_xref="EcoGene:EG11647" /db_xref="GeneID:944895" /translation="MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLR EKSVELTRKIFADLGAWQIAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIV GGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITF IDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVN MLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSIIPEPLGGAH RNPEAMAASLKAQLLADLADLDVLSTEDLKNRRYQRLMSYGYA" gene 209679..211820 /gene="ldcC" /locus_tag="b0186" /gene_synonym="ECK0185; JW0181; ldc; LDC2; ldcH" /db_xref="EcoGene:EG13219" /db_xref="GeneID:944887" CDS 209679..211820 /gene="ldcC" /locus_tag="b0186" /gene_synonym="ECK0185; JW0181; ldc; LDC2; ldcH" /EC_number="4.1.1.18" /function="enzyme; Energy metabolism, carbon: Pyruvate dehydrogenase" /experiment="N-terminus verified by Edman degradation: PMID 9226257,9339543" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006096 - glycolysis" /codon_start=1 /transl_table=11 /product="lysine decarboxylase 2, constitutive" /protein_id="NP_414728.1" /db_xref="GI:16128179" /db_xref="ASAP:ABE-0000633" /db_xref="UniProtKB/Swiss-Prot:P52095" /db_xref="EcoGene:EG13219" /db_xref="GeneID:944887" /translation="MNIIAIMGPHGVFYKDEPIKELESALVAQGFQIIWPQNSVDLLK FIEHNPRICGVIFDWDEYSLDLCSDINQLNEYLPLYAFINTHSTMDVSVQDMRMALWF FEYALGQAEDIAIRMRQYTDEYLDNITPPFTKALFTYVKERKYTFCTPGHMGGTAYQK SPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYIVTN GTSTSNKIVGMYAAPSGSTLLIDRNCHKSLAHLLMMNDVVPVWLKPTRNALGILGGIP RREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQTLDVPSIHFDSAWV PYTHFHPIYQGKSGMSGERVAGKVIFETQSTHKMLAALSQASLIHIKGEYDEEAFNEA FMMHTTTSPSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWF FDIWQPPQVDEAECWPVAPGEQWHGFNDADADHMFLDPVKVTILTPGMDEQGNMSEEG IPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKRSYDLNLRI KNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRKHDLPGLMLRAFDTLPEMIMTPHQAW QRQIKGEVETIALEQLVGRVSANMILPYPPGVPLLMPGEMLTKESRTVLDFLLMLCSV GQHYPGFETDIHGAKQDEDGVYRVRVLKMAG" gene 211877..212266 /gene="yaeR" /locus_tag="b0187" /gene_synonym="ECK0186; JW0182" /db_xref="EcoGene:EG13224" /db_xref="GeneID:944875" CDS 211877..212266 /gene="yaeR" /locus_tag="b0187" /gene_synonym="ECK0186; JW0182" /codon_start=1 /transl_table=11 /product="putative lyase" /protein_id="NP_414729.4" /db_xref="GI:90111096" /db_xref="ASAP:ABE-0000635" /db_xref="UniProtKB/Swiss-Prot:P52096" /db_xref="EcoGene:EG13224" /db_xref="GeneID:944875" /translation="MLGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSW KGDLALNGQYVIELFSFPFPPERPSRPEACGLRHLAFSVDDIDAAVAHLESHNVKCET IRVDPYTQKRFTFFNDPDGLPLELYEQ" gene 212331..213629 /gene="tilS" /locus_tag="b0188" /gene_synonym="ECK0187; JW0183; mesJ; yaeN" /db_xref="EcoGene:EG13220" /db_xref="GeneID:944889" CDS 212331..213629 /gene="tilS" /locus_tag="b0188" /gene_synonym="ECK0187; JW0183; mesJ; yaeN" /EC_number="6.1.1.5" /function="enzyme; tRNA modification" /codon_start=1 /transl_table=11 /product="tRNA(Ile)-lysidine synthetase" /protein_id="NP_414730.1" /db_xref="GI:16128181" /db_xref="ASAP:ABE-0000638" /db_xref="UniProtKB/Swiss-Prot:P52097" /db_xref="EcoGene:EG13220" /db_xref="GeneID:944889" /translation="MTLTLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVAL RAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFA RTLLPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTR GELVQWARQYDLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAE QESLLDELLADDLAHCQSPQGTLQIVPMLAMSDARRAAIIRRWLAGQNAPMPSRDALV RIWQEVALAREDASPCLRLGAFEIRRYQSQLWWIKSVTGQSENIVPWQTWLQPLELPA GLGSVQLNAGGDIRPPRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRD TTPLLFYGETLIAAAGVFVTQEGVAEGENGVSFVWQKTLS" repeat_region 213632..213668 /note="REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(213678..213932) /gene="rof" /locus_tag="b0189" /gene_synonym="ECK0188; JW0184; mesJ; yaeO" /db_xref="EcoGene:EG13221" /db_xref="GeneID:944891" CDS complement(213678..213932) /gene="rof" /locus_tag="b0189" /gene_synonym="ECK0188; JW0184; mesJ; yaeO" /experiment="N-terminus verified by Edman degradation: PMID 10739205" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="modulator of Rho-dependent transcription termination" /protein_id="NP_414731.2" /db_xref="GI:90111097" /db_xref="ASAP:ABE-0000641" /db_xref="UniProtKB/Swiss-Prot:P0AFW8" /db_xref="EcoGene:EG13221" /db_xref="GeneID:944891" /translation="MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASDLV SRKNVEYLVVEAAGETRELRLDKITSFSHPEIGTVVVSES" gene complement(213925..214125) /gene="yaeP" /locus_tag="b4406" /gene_synonym="ECK0189; JW0185" /db_xref="EcoGene:EG13222" /db_xref="GeneID:1450233" CDS complement(213925..214125) /gene="yaeP" /locus_tag="b4406" /gene_synonym="ECK0189; JW0185" /note="conserved hypothetical protein" /codon_start=1 /transl_table=11 /product="UPF0253 family protein" /protein_id="YP_026160.1" /db_xref="GI:49176004" /db_xref="ASAP:ABE-0047214" /db_xref="UniProtKB/Swiss-Prot:P0A8K5" /db_xref="EcoGene:EG13222" /db_xref="GeneID:1450233" /translation="MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALS EAVREKAAYAAANLLVSDYVNE" gene 214291..214836 /gene="yaeQ" /locus_tag="b0190" /gene_synonym="ECK0190; JW0186" /db_xref="EcoGene:EG13223" /db_xref="GeneID:946809" CDS 214291..214836 /gene="yaeQ" /locus_tag="b0190" /gene_synonym="ECK0190; JW0186" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="PDDEXK superfamily protein" /protein_id="NP_414732.1" /db_xref="GI:16128183" /db_xref="ASAP:ABE-0000648" /db_xref="UniProtKB/Swiss-Prot:P0AA97" /db_xref="EcoGene:EG13223" /db_xref="GeneID:946809" /translation="MALKATIYKATVNVADLDRNQFLDASLTLARHPSETQERMMLRL LAWLKYADERLQFTRGLCADDEPEAWLRNDHLGIDLWIELGLPDERRIKKACTQAAEV ALFTYNSRAAQIWWQQNQSKCVQFANLSVWYLDDEQLAKVSAFADRTMTLQATIQDGV IWLSDDKNNLEVNLTAWQQPS" gene 214833..215255 /gene="arfB" /locus_tag="b0191" /gene_synonym="ECK0191; JW0187; yaeJ" /db_xref="EcoGene:EG12354" /db_xref="GeneID:946046" CDS 214833..215255 /gene="arfB" /locus_tag="b0191" /gene_synonym="ECK0191; JW0187; yaeJ" /codon_start=1 /transl_table=11 /product="alternative stalled-ribosome rescue factor B; peptidyl-tRNA hydrolase, ribosome-attached" /protein_id="NP_414733.1" /db_xref="GI:16128184" /db_xref="ASAP:ABE-0000650" /db_xref="UniProtKB/Swiss-Prot:P40711" /db_xref="EcoGene:EG12354" /db_xref="GeneID:946046" /translation="MIVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIR ASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAMIKELTTEK KARRPTRPTRASKERRLASKAQKSSVKAMRGKVRSGRE" gene 215269..215979 /gene="nlpE" /locus_tag="b0192" /gene_synonym="cutF; ECK0192; JW0188" /db_xref="EcoGene:EG12137" /db_xref="GeneID:946782" CDS 215269..215979 /gene="nlpE" /locus_tag="b0192" /gene_synonym="cutF; ECK0192; JW0188" /function="putative transport; Detoxification" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006805 - xenobiotic metabolic process" /note="copper homeostasis protein (lipoprotein)" /codon_start=1 /transl_table=11 /product="lipoprotein involved with copper homeostasis and adhesion" /protein_id="NP_414734.1" /db_xref="GI:16128185" /db_xref="ASAP:ABE-0000652" /db_xref="UniProtKB/Swiss-Prot:P40710" /db_xref="EcoGene:EG12137" /db_xref="GeneID:946782" /translation="MVKKAIVTAMAVISLFTLMGCNNRAEVDTLSPAQAAELKPMPQS WRGVLPCADCEGIETSLFLEKDGTWVMNERYLGAREEPSSFASYGTWARTADKLVLTD SKGEKSYYRAKGDALEMLDREGNPIESQFNYTLEAAQSSLPMTPMTLRGMYFYMADAA TFTDCATGKRFMVANNAELERSYLAARGHSEKPVLLSVEGHFTLEGNPDTGAPTKVLA PDTAGKFYPNQDCSSLGQ" repeat_region 216027..216137 /note="RIP16 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(216179..217003) /gene="yaeF" /locus_tag="b0193" /gene_synonym="ECK0193; JW5016; yaeK" /db_xref="EcoGene:EG12138" /db_xref="GeneID:944892" CDS complement(216179..217003) /gene="yaeF" /locus_tag="b0193" /gene_synonym="ECK0193; JW5016; yaeK" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="NP_414735.4" /db_xref="GI:90111098" /db_xref="ASAP:ABE-0000655" /db_xref="UniProtKB/Swiss-Prot:P37056" /db_xref="EcoGene:EG12138" /db_xref="GeneID:944892" /translation="MDKPKAYCRLFLPSFLLLSACTVDISQPDPSATAVDAEAKTWAV KFQHQSSFTEQSIKEITAPDLKPGDLLFSSSLGVTSFGIRVFSTSSVSHVAIFLGDNN VAEATGAGVQIVSLKKAMKHSDKLFVLRVPDLTPQQATDITAFANKIKDSGYNYRGIV EFIPFMVTRQMCSLNPFSEDFRQQCVSGLAKAQLSSVGEGDKKSWFCSEFVTDAFAKA GHPLTLAQSGWISPADLMHMRIGDVSAFKPETQLQYVGHLKPGIYIKAGRFVGLTR" gene complement(217057..218775) /gene="proS" /locus_tag="b0194" /gene_synonym="drpA; ECK0194; JW0190" /db_xref="EcoGene:EG10770" /db_xref="GeneID:949116" CDS complement(217057..218775) /gene="proS" /locus_tag="b0194" /gene_synonym="drpA; ECK0194; JW0190" /EC_number="6.1.1.15" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /experiment="N-terminus verified by Edman degradation: PMID 2203971,9298646" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="proline tRNA synthetase" /codon_start=1 /transl_table=11 /product="prolyl-tRNA synthetase" /protein_id="NP_414736.1" /db_xref="GI:16128187" /db_xref="ASAP:ABE-0000657" /db_xref="UniProtKB/Swiss-Prot:P16659" /db_xref="EcoGene:EG10770" /db_xref="GeneID:949116" /translation="MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLP TGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGER PFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDA YSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGE DDVVFSDTSDYAANIELAEAIAPKEPRAAATQEMTLVDTPNAKTIAELVEQFNLPIEK TVKTLLVKAVEGSSFPQVALLVRGDHELNEVKAEKLPQVASPLTFATEEEIRAVVKAG PGSLGPVNMPIPVVIDRTVAAMSDFAAGANIDGKHYFGINWDRDVATPEVADIRNVVA GDPSPDGQGRLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCYGIGVTR VVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQGIEVL LDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVEYL VKQIKG" gene complement(218887..219594) /gene="tsaA" /locus_tag="b0195" /gene_synonym="ECK0195; JW0191; yaeB" /db_xref="EcoGene:EG11503" /db_xref="GeneID:949112" CDS complement(218887..219594) /gene="tsaA" /locus_tag="b0195" /gene_synonym="ECK0195; JW0191; yaeB" /function="enzyme; tRNA modification" /codon_start=1 /transl_table=11 /product="tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase, SAM-dependent" /protein_id="NP_414737.1" /db_xref="GI:16128188" /db_xref="ASAP:ABE-0000661" /db_xref="UniProtKB/Swiss-Prot:P28634" /db_xref="EcoGene:EG11503" /db_xref="GeneID:949112" /translation="MSSFQFEQIGVIRSPYKEKFAVPRQPGLVKSANGELHLIAPYNQ ADAVRGLEAFSHLWILFVFHQTMEGGWRPTVRPPRLGGNARMGVFATRSTFRPNPIGM SLVELKEVVCHKDSVILKLGSLDLVDGTPVVDIKPYLPFAESLPDASASYAQSAPAAE MAVSFTAEVEKQLLTLEKRYPQLTLFIREVLAQDPRPAYRKGEETGKTYAVWLHDFNV RWRVTDAGFEVFALEPR" gene complement(219591..219995) /gene="rcsF" /locus_tag="b0196" /gene_synonym="ECK0196; JW0192" /db_xref="EcoGene:EG11502" /db_xref="GeneID:949113" CDS complement(219591..219995) /gene="rcsF" /locus_tag="b0196" /gene_synonym="ECK0196; JW0192" /function="regulator; Surface polysaccharides & antigens" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009242 - colanic acid biosynthetic process" /note="regulator in colanic acid synthesis; interacts with RcsB" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_414738.1" /db_xref="GI:16128189" /db_xref="ASAP:ABE-0000663" /db_xref="UniProtKB/Swiss-Prot:P69411" /db_xref="EcoGene:EG11502" /db_xref="GeneID:949113" /translation="MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAP RATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKAN AVLLHSCEVTSGTPGCYRQAVCIGSALNITAK" gene complement(220113..220928) /gene="metQ" /locus_tag="b0197" /gene_synonym="ECK0197; JW0193; metD; yaeC" /db_xref="EcoGene:EG11504" /db_xref="GeneID:944893" CDS complement(220113..220928) /gene="metQ" /locus_tag="b0197" /gene_synonym="ECK0197; JW0193; metD; yaeC" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0009274 - peptidoglycan-based cell wall; GO:0042597 - periplasmic space" /note="D-methionine transport protein (ABC superfamily, peri_bind)" /codon_start=1 /transl_table=11 /product="DL-methionine transporter subunit" /protein_id="NP_414739.1" /db_xref="GI:16128190" /db_xref="ASAP:ABE-0000666" /db_xref="UniProtKB/Swiss-Prot:P28635" /db_xref="EcoGene:EG11504" /db_xref="GeneID:944893" /translation="MAFKFKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQ VAEVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYK LVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDG VGLLPTVLDVVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGI FVEDKESPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKVFNGGAVKGW" gene complement(220968..221621) /gene="metI" /locus_tag="b0198" /gene_synonym="ECK0198; JW0194; metD; yaeE" /db_xref="EcoGene:EG11737" /db_xref="GeneID:944894" CDS complement(220968..221621) /gene="metI" /locus_tag="b0198" /gene_synonym="ECK0198; JW0194; metD; yaeE" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="D- and L-methionine transport protein (ABC superfamily, membrane)" /codon_start=1 /transl_table=11 /product="DL-methionine transporter subunit" /protein_id="NP_414740.1" /db_xref="GI:16128191" /db_xref="ASAP:ABE-0000668" /db_xref="UniProtKB/Swiss-Prot:P31547" /db_xref="EcoGene:EG11737" /db_xref="GeneID:944894" /translation="MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPG QIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAP FIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK" gene complement(221614..222645) /gene="metN" /locus_tag="b0199" /gene_synonym="abc; ECK0199; JW0195; metD" /db_xref="EcoGene:EG11621" /db_xref="GeneID:944896" CDS complement(221614..222645) /gene="metN" /locus_tag="b0199" /gene_synonym="abc; ECK0199; JW0195; metD" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0005737 - cytoplasm" /note="D- and L-methionine transport protein (ABC superfamily, atp_bind)" /codon_start=1 /transl_table=11 /product="DL-methionine transporter subunit" /protein_id="NP_414741.1" /db_xref="GI:16128192" /db_xref="ASAP:ABE-0000671" /db_xref="UniProtKB/Swiss-Prot:P30750" /db_xref="EcoGene:EG11621" /db_xref="GeneID:944896" /translation="MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGK STLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGN VALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE LIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQERLQAEPFTDCVPMLRLEFTGQ SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHH VKVEVLGYV" gene 222833..223408 /gene="gmhB" /locus_tag="b0200" /gene_synonym="ECK0200; gmbC; gmbX; gmhX; JW0196; wcbN; yaeD" /db_xref="EcoGene:EG11736" /db_xref="GeneID:944879" CDS 222833..223408 /gene="gmhB" /locus_tag="b0200" /gene_synonym="ECK0200; gmbC; gmbX; gmhX; JW0196; wcbN; yaeD" /function="enzyme; Surface polysaccharides and antigens" /codon_start=1 /transl_table=11 /product="D,D-heptose 1,7-bisphosphate phosphatase" /protein_id="NP_414742.1" /db_xref="GI:16128193" /db_xref="ASAP:ABE-0000675" /db_xref="UniProtKB/Swiss-Prot:P63228" /db_xref="EcoGene:EG11736" /db_xref="GeneID:944879" /translation="MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKK MGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEE FRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKP ITPEAENAADWVLNSLADLPQAIKKQQKPAQ" gene 223771..225312 /gene="rrsH" /locus_tag="b0201" /gene_synonym="ECK0201; JWR0001" /db_xref="EcoGene:EG30090" /db_xref="GeneID:944897" rRNA 223771..225312 /gene="rrsH" /locus_tag="b0201" /gene_synonym="ECK0201; JWR0001" /product="16S ribosomal RNA of rrnH operon" /db_xref="ASAP:ABE-0000677" /db_xref="EcoGene:EG30090" /db_xref="GeneID:944897" gene 225381..225457 /gene="ileV" /locus_tag="b0202" /gene_synonym="ECK0202; JWR0002" /db_xref="EcoGene:EG30045" /db_xref="GeneID:944884" tRNA 225381..225457 /gene="ileV" /locus_tag="b0202" /gene_synonym="ECK0202; JWR0002" /product="tRNA-Ile" /note="anticodon: GAU" /db_xref="ASAP:ABE-0000679" /db_xref="EcoGene:EG30045" /db_xref="GeneID:944884" gene 225500..225575 /gene="alaV" /locus_tag="b0203" /gene_synonym="ECK0203; JWR0003" /db_xref="EcoGene:EG30010" /db_xref="GeneID:944890" tRNA 225500..225575 /gene="alaV" /locus_tag="b0203" /gene_synonym="ECK0203; JWR0003" /product="tRNA-Ala" /note="anticodon: UGC" /db_xref="ASAP:ABE-0000682" /db_xref="EcoGene:EG30010" /db_xref="GeneID:944890" gene 225759..228662 /gene="rrlH" /locus_tag="b0204" /gene_synonym="ECK0204; JWR0004" /db_xref="EcoGene:EG30083" /db_xref="GeneID:944900" rRNA 225759..228662 /gene="rrlH" /locus_tag="b0204" /gene_synonym="ECK0204; JWR0004" /product="23S ribosomal RNA of rrnH operon" /db_xref="ASAP:ABE-0000684" /db_xref="EcoGene:EG30083" /db_xref="GeneID:944900" gene 228756..228875 /gene="rrfH" /locus_tag="b0205" /gene_synonym="ECK0205; JWR0005" /db_xref="EcoGene:EG30076" /db_xref="GeneID:944898" rRNA 228756..228875 /gene="rrfH" /locus_tag="b0205" /gene_synonym="ECK0205; JWR0005" /product="5S ribosomal RNA of rrnH operon" /db_xref="ASAP:ABE-0000686" /db_xref="EcoGene:EG30076" /db_xref="GeneID:944898" gene 228928..229004 /gene="aspU" /locus_tag="b0206" /gene_synonym="ECK0206; JWR0006" /db_xref="EcoGene:EG30024" /db_xref="GeneID:944880" tRNA 228928..229004 /gene="aspU" /locus_tag="b0206" /gene_synonym="ECK0206; JWR0006" /product="tRNA-Asp" /note="anticodon: GUC" /db_xref="ASAP:ABE-0000688" /db_xref="EcoGene:EG30024" /db_xref="GeneID:944880" gene 229167..229970 /gene="dkgB" /locus_tag="b0207" /gene_synonym="ECK0207; JW0197; yafB" /db_xref="EcoGene:EG11648" /db_xref="GeneID:944901" CDS 229167..229970 /gene="dkgB" /locus_tag="b0207" /gene_synonym="ECK0207; JW0197; yafB" /EC_number="1.1.1.274" /function="putative enzyme; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="2,5-diketo-D-gluconate reductase B" /protein_id="NP_414743.1" /db_xref="GI:16128194" /db_xref="ASAP:ABE-0000692" /db_xref="UniProtKB/Swiss-Prot:P30863" /db_xref="EcoGene:EG11648" /db_xref="GeneID:944901" /translation="MAIPAFGLGTFRLKDDVVISSVITALELGYRAIDTAQIYDNEAA VGQAIAESGVPRHELYITTKIWIENLSKDKLIPSLKESLQKLRTDYVDLTLIHWPSPN DEVSVEEFMQALLEAKKQGLTREIGISNFTIPLMEKAIAAVGAENIATNQIELSPYLQ NRKVVAWAKQHGIHITSYMTLAYGKALKDEVIARIAAKHNATPAQVILAWAMGEGYSV IPSSTKRKNLESNLKAQNLQLDAEDKKAIAALDCNDRLVSPEGLAPEWD" gene complement(229967..230881) /gene="yafC" /locus_tag="b0208" /gene_synonym="ECK0208; JW0198" /db_xref="EcoGene:EG11649" /db_xref="GeneID:947507" CDS complement(229967..230881) /gene="yafC" /locus_tag="b0208" /gene_synonym="ECK0208; JW0198" /function="putative transport; Not classified" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="LysR family putative transcriptional regulator" /protein_id="NP_414744.1" /db_xref="GI:16128195" /db_xref="ASAP:ABE-0000694" /db_xref="UniProtKB/Swiss-Prot:P30864" /db_xref="EcoGene:EG11649" /db_xref="GeneID:947507" /translation="MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMK LGVSLLNRTTRQLSLTEEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATP VVLHFLMPLIKPFRERYPEVTLSLVSSETIINLIERKVDVAIRAGTLTDSSLRARPLF NSYRKIIASPDYISRYGKPETIDDLKQHICLGFTEPASLNTWPIARSDGQLHEVKYGL SSNSGETLKQLCLSGNGIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDR AVSTRIRAFIDFLSEHVKTAPGGAVREA" gene 231122..231922 /gene="yafD" /locus_tag="b0209" /gene_synonym="ECK0209; JW5017" /db_xref="EcoGene:EG11650" /db_xref="GeneID:946286" CDS 231122..231922 /gene="yafD" /locus_tag="b0209" /gene_synonym="ECK0209; JW5017" /codon_start=1 /transl_table=11 /product="endo/exonuclease/phosphatase family protein" /protein_id="NP_414745.1" /db_xref="GI:16128196" /db_xref="ASAP:ABE-0000700" /db_xref="UniProtKB/Swiss-Prot:P0A8U2" /db_xref="EcoGene:EG11650" /db_xref="GeneID:946286" /translation="MRKNTYAMRYVAGQPAERILPPGSFASIGQALPPGEPLSTEERI RILVWNIYKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFV LPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNF SLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTD DQRRRAFGRPLDFVFYRGLNVSEASVLVTRASDHNPLLVEFSPGKPDK" gene 231926..232549 /gene="yafE" /locus_tag="b0210" /gene_synonym="ECK0210; JW0200" /db_xref="EcoGene:EG11651" /db_xref="GeneID:946197" CDS 231926..232549 /gene="yafE" /locus_tag="b0210" /gene_synonym="ECK0210; JW0200" /function="putative enzyme; Not classified" /GO_process="GO:0009102 - biotin biosynthetic process" /note="putative biotin synthesis protein" /codon_start=1 /transl_table=11 /product="putative S-adenosyl-L-methionine-dependent methyltransferase" /protein_id="NP_414746.1" /db_xref="GI:16128197" /db_xref="ASAP:ABE-0000702" /db_xref="UniProtKB/Swiss-Prot:P30866" /db_xref="EcoGene:EG11651" /db_xref="GeneID:946197" /translation="MSGLPQGRPTFGAAQNVSAVVAYDLSAHMLDVVAQAAEARQLKN ITTRQGYAESLPFADNAFDIVISRYSAHHWHDVGAALREVNRILKPGGRLIVMDVMSP GHPVRDIWLQTVEALRDTSHVRNYASGEWLTLINEANLIVDNLITDKLPLEFSSWVAR MRTPEALVDAIRIYQQSASTEVRTYFALQNDGFFTSDIIMVDAHKAA" gene complement(232597..233955) /gene="mltD" /locus_tag="b0211" /gene_synonym="dniR; ECK0211; JW5018; yafG" /db_xref="EcoGene:EG10246" /db_xref="GeneID:945694" CDS complement(232597..233955) /gene="mltD" /locus_tag="b0211" /gene_synonym="dniR; ECK0211; JW5018; yafG" /EC_number="3.2.1.-" /function="regulator; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0009061 - anaerobic respiration; GO:0017004 - cytochrome complex assembly; GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="putative membrane-bound lytic murein transglycosylase D" /protein_id="NP_414747.1" /db_xref="GI:16128198" /db_xref="ASAP:ABE-0000704" /db_xref="UniProtKB/Swiss-Prot:P0AEZ7" /db_xref="EcoGene:EG10246" /db_xref="GeneID:945694" /translation="MKAKAILLASVLLVGCQSTGNVQQHAQSLSAAGQGEAAKFTSQA RWMDDGTSIAPDGDLWAFIGDELKMGIPENDRIREQKQKYLRNKSYLHDVTLRAEPYM YWIAGQVKKRNMPMELVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQTRNY DARRDVVASTTAALNMMQRLNKMFDGDWLLTVAAYNSGEGRVMKAIKTNKARGKSTDF WSLPLPQETKQYVPKMLALSDILKNSKRYGVRLPTTDESRALARVHLSSPVEMAKVAD MAGISVSKLKTFNAGVKGSTLGASGPQYVMVPKKHADQLRESLASGEIAAVQSTLVAD NTPLNSRVYTVRSGDTLSSIASRLGVSTKDLQQWNKLRGSKLKPGQSLTIGAGSSAQR LANNSDSITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVKNNNMP DS" gene complement(234027..234782) /gene="gloB" /locus_tag="b0212" /gene_synonym="ECK0212; JW0202; yafR" /db_xref="EcoGene:EG13330" /db_xref="GeneID:944902" CDS complement(234027..234782) /gene="gloB" /locus_tag="b0212" /gene_synonym="ECK0212; JW0202; yafR" /function="putative enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_process="GO:0009438 - methylglyoxal metabolic process" /note="probable hydroxyacylglutathione hydrolase" /codon_start=1 /transl_table=11 /product="hydroxyacylglutathione hydrolase" /protein_id="NP_414748.1" /db_xref="GI:16128199" /db_xref="ASAP:ABE-0000707" /db_xref="UniProtKB/Swiss-Prot:P0AC84" /db_xref="EcoGene:EG13330" /db_xref="GeneID:944902" /translation="MNLNSIPAFDDNYIWVLNDEAGRCLIVDPGDAEPVLNAIAANNW QPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQDKGTTQVVKDGETAFVLGHEF SVIATPGHTLGHICYFSKPYLFCGDTLFSGGCGRLFEGTASQMYQSLKKLSALPDDTL VCCAHEYTLSNMKFALSILPHDLSINDYYRKVKELRAKNQITLPVILKNERQINVFLR TEDIDLINVINEETLLQQPEERFAWLRSKKDRF" gene 234816..235538 /gene="yafS" /locus_tag="b0213" /gene_synonym="ECK0213; JW0203" /db_xref="EcoGene:EG13331" /db_xref="GeneID:944903" CDS 234816..235538 /gene="yafS" /locus_tag="b0213" /gene_synonym="ECK0213; JW0203" /codon_start=1 /transl_table=11 /product="putative S-adenosyl-L-methionine-dependent methyltransferase" /protein_id="NP_414749.2" /db_xref="GI:90111099" /db_xref="ASAP:ABE-0000713" /db_xref="UniProtKB/Swiss-Prot:P75672" /db_xref="EcoGene:EG13331" /db_xref="GeneID:944903" /translation="MKPARVPQTVVAPDCWGDLPWGKLYRKALERQLNPWFTKMYGFH LLKIGNLSAEINCEACAVSHQVNVSAQGMPVQVQADPLHLPFADKSVDVCLLAHTLPW CTDPHRLLREADRVLIDDGWLVISGFNPISFMGLRKLVPVLRKTSPYNSRMFTLMRQL DWLSLLNFEVLHASRFHVLPWNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMKQ SKNKPRIRQAVGATRQCRKPQA" gene complement(235535..236002) /gene="rnhA" /locus_tag="b0214" /gene_synonym="cer; dasF; ECK0214; herA; JW0204; rnh; sdrA; sin" /db_xref="EcoGene:EG10860" /db_xref="GeneID:946955" CDS complement(235535..236002) /gene="rnhA" /locus_tag="b0214" /gene_synonym="cer; dasF; ECK0214; herA; JW0204; rnh; sdrA; sin" /EC_number="3.1.26.4" /function="enzyme; Degradation of RNA" /experiment="N-terminus verified by Edman degradation: PMID 2171503" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication; GO:0006508 - proteolysis; GO:0006401 - RNA catabolic process" /note="RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replication" /codon_start=1 /transl_table=11 /product="ribonuclease HI, degrades RNA of DNA-RNA hybrids" /protein_id="NP_414750.1" /db_xref="GI:16128201" /db_xref="ASAP:ABE-0000717" /db_xref="UniProtKB/Swiss-Prot:P0A7Y4" /db_xref="EcoGene:EG10860" /db_xref="GeneID:946955" /translation="MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTN NRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVD LWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV" gene 236067..236798 /gene="dnaQ" /locus_tag="b0215" /gene_synonym="ECK0215; JW0205; mutD" /db_xref="EcoGene:EG10243" /db_xref="GeneID:946441" CDS 236067..236798 /gene="dnaQ" /locus_tag="b0215" /gene_synonym="ECK0215; JW0205; mutD" /EC_number="2.7.7.7" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication; GO:0006457 - protein folding" /note="DNA polymerase III, epsilon subunit" /codon_start=1 /transl_table=11 /product="DNA polymerase III epsilon subunit" /protein_id="NP_414751.1" /db_xref="GI:16128202" /db_xref="ASAP:ABE-0000722" /db_xref="UniProtKB/Swiss-Prot:P03007" /db_xref="EcoGene:EG10243" /db_xref="GeneID:946441" /translation="MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLT GNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAF DIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRT LHGALLDAQILAEVYLAMTGGQTSMAFAMEGETQQQQGEATIQRIVRQASKLRVVFAT DEEIAAHEARLDLVQKKGGSCLWRA" gene 236931..237007 /gene="aspV" /locus_tag="b0216" /gene_synonym="ECK0216; JWR0007" /db_xref="EcoGene:EG30025" /db_xref="GeneID:947541" tRNA 236931..237007 /gene="aspV" /locus_tag="b0216" /gene_synonym="ECK0216; JWR0007" /product="tRNA-Asp" /note="anticodon: GUC" /db_xref="ASAP:ABE-0000724" /db_xref="EcoGene:EG30025" /db_xref="GeneID:947541" gene 237335..238120 /gene="yafT" /locus_tag="b0217" /gene_synonym="ECK0217; JW0206" /db_xref="EcoGene:EG13332" /db_xref="GeneID:949009" CDS 237335..238120 /gene="yafT" /locus_tag="b0217" /gene_synonym="ECK0217; JW0206" /function="putative enzyme; Not classified" /note="putative aminopeptidase" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_414752.1" /db_xref="GI:16128203" /db_xref="ASAP:ABE-0000727" /db_xref="UniProtKB/Swiss-Prot:P77339" /db_xref="EcoGene:EG13332" /db_xref="GeneID:949009" /translation="MNSKKLCCICVLFSLLAGCASESSIDEKKKKAQVTQSNINKNTP QQLTDKDLFGNETTLAVSEEDIQAALDGDEFRVPLNSPVILVQSGNRAPETIMQEEMR KYYTVSTFSGIPDRQKPLTCNKNKDKNENEDVASAENMNWMQALRFVAAKGHQKAIIV YQDMLQTGKYDSALKSTVWSDYKNDKLTDAISLRYLVRFTLVDVATGEWATWSPVNYE YKVLPPLPDKNEASTTDMTEQQIMQLKQKTYKAMVKDLVNRYQ" gene complement(238257..238736) /gene="ykfM" /locus_tag="b4586" /gene_synonym="ECK4397" /db_xref="EcoGene:EG14451" /db_xref="GeneID:5061498" CDS complement(238257..238736) /gene="ykfM" /locus_tag="b4586" /gene_synonym="ECK4397" /codon_start=1 /transl_table=11 /product="lethality reduction protein, putative inner membrane protein" /protein_id="YP_001165307.1" /db_xref="GI:145698220" /db_xref="UniProtKB/Swiss-Prot:A5A605" /db_xref="EcoGene:EG14451" /db_xref="GeneID:5061498" /translation="MRLHVKLKEFLSMFFMAILFFPAFNASLFFTGVKPLYSIIKCST EIFYDWRMLILCFGFMSFSFLNIHVILLTIIKSFLIKKTKVVNFATDITIQLTLIFLL IAIVIAPLIAPFVTGYVNTNYHPCGNNTGIFPGAIYIKNGMKCNNGYISRKEDSAVK" gene complement(238746..239102) /gene="yafU" /locus_tag="b0218" /gene_synonym="ECK0218; JW0207" /pseudo /db_xref="EcoGene:EG13333" /db_xref="GeneID:946644" CDS complement(238746..239102) /gene="yafU" /locus_tag="b0218" /gene_synonym="ECK0218; JW0207" /note="pseudogene" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0000729" /db_xref="UniProtKB/Swiss-Prot:P77354" /db_xref="EcoGene:EG13333" /db_xref="GeneID:946644" gene 239106..239378 /gene="yafF" /locus_tag="b4503" /gene_synonym="ECK0219; JW0208" /pseudo /db_xref="EcoGene:EG11772" /db_xref="GeneID:1450235" CDS 239106..239378 /gene="yafF" /locus_tag="b4503" /gene_synonym="ECK0219; JW0208" /GO_component="GO:0005737 - cytoplasm" /note="pseudogene, H repeat-associated protein" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0285024" /db_xref="UniProtKB/Swiss-Prot:Q2EEP9" /db_xref="EcoGene:EG11772" /db_xref="GeneID:1450235" gene complement(239419..240189) /gene="yafV" /locus_tag="b0219" /gene_synonym="ECK0220; JW5019" /db_xref="EcoGene:EG13334" /db_xref="GeneID:946585" CDS complement(239419..240189) /gene="yafV" /locus_tag="b0219" /gene_synonym="ECK0220; JW5019" /function="putative enzyme; Not classified" /note="putative EC 3.5. amidase-type enzyme" /codon_start=1 /transl_table=11 /product="putative NAD(P)-binding C-N hydrolase family amidase" /protein_id="NP_414754.1" /db_xref="GI:16128205" /db_xref="ASAP:ABE-0000734" /db_xref="UniProtKB/Swiss-Prot:Q47679" /db_xref="EcoGene:EG13334" /db_xref="GeneID:946585" /translation="MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMF TSGFAMEAAASSLAQDDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTV HFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLAL YVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIA TADAHQATRIDAELSMAALREYREKFPAWQDADEFRLW" gene 240343..240816 /gene="ivy" /locus_tag="b0220" /gene_synonym="ECK0221; JW0210; ykfE" /db_xref="EcoGene:EG13547" /db_xref="GeneID:946530" CDS 240343..240816 /gene="ivy" /locus_tag="b0220" /gene_synonym="ECK0221; JW0210; ykfE" /note="inhibitor of vertebrate C-type lysozyme, periplasmic" /codon_start=1 /transl_table=11 /product="inhibitor of c-type lysozyme, periplasmic" /protein_id="NP_414755.1" /db_xref="GI:16128206" /db_xref="ASAP:ABE-0000740" /db_xref="UniProtKB/Swiss-Prot:P0AD59" /db_xref="EcoGene:EG13547" /db_xref="GeneID:946530" /translation="MGRISSGGMMFKAITTVAALVIATSAMAQDDLTISSLAKGETTK AAFNQMVQGHKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEK SNQMTGLFSTIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK" gene complement(240859..243303) /gene="fadE" /locus_tag="b0221" /gene_synonym="ECK0222; fadF; JW5020; yafH" /db_xref="EcoGene:EG13145" /db_xref="GeneID:949007" CDS complement(240859..243303) /gene="fadE" /locus_tag="b0221" /gene_synonym="ECK0222; fadF; JW5020; yafH" /EC_number="1.3.99.-" /function="putative enzyme; Not classified" /GO_process="GO:0019395 - fatty acid oxidation" /codon_start=1 /transl_table=11 /product="acyl coenzyme A dehydrogenase" /protein_id="NP_414756.2" /db_xref="GI:90111100" /db_xref="ASAP:ABE-0000743" /db_xref="UniProtKB/Swiss-Prot:Q47146" /db_xref="EcoGene:EG13145" /db_xref="GeneID:949007" /translation="MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWS AWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDL FQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLK EHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGT DEQKDHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWN KRYITLAPIATVLGLAFKLSDPEKLLGGAEDLGITCALIPTTTPGVEIGRRHFPLNVP FQNGPTRGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALA TGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAI VKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITVEGANILTRSMMI FGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLTSST PTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLASAV LKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLLQNFPNRVVAGLLNVVIFPTGRH YLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHNPVGLLEEALVDVIAADPIHQ RICKELGKNLPFTRLDELAHNALVKGLIDKDEAAILVKAEESRLRSINVDDFDPEELA TKPVKLPEKVRKVEAA" gene 243543..244121 /gene="gmhA" /locus_tag="b0222" /gene_synonym="ECK0223; isn; JW0212; lpcA; tfrA; yafI" /db_xref="EcoGene:EG13146" /db_xref="GeneID:949134" CDS 243543..244121 /gene="gmhA" /locus_tag="b0222" /gene_synonym="ECK0223; isn; JW0212; lpcA; tfrA; yafI" /EC_number="5.-.-.-" /function="enzyme; Surface polysaccharides & antigens" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009244 - lipopolysaccharide core region biosynthetic process" /note="phosphoheptose isomerase" /codon_start=1 /transl_table=11 /product="D-sedoheptulose 7-phosphate isomerase" /protein_id="NP_414757.1" /db_xref="GI:16128208" /db_xref="ASAP:ABE-0000751" /db_xref="UniProtKB/Swiss-Prot:P63224" /db_xref="EcoGene:EG13146" /db_xref="GeneID:949134" /translation="MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAG GKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFS RYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEI RVPHFGYADRIQEIHIKVIHILIQLIEKEMVK" repeat_region 244129..244263 /note="REP17 (repetitive extragenic palindromic) element; contains 3 REP sequences" gene 244327..245094 /gene="yafJ" /locus_tag="b0223" /gene_synonym="ECK0224; JW0213" /db_xref="EcoGene:EG13147" /db_xref="GeneID:944906" CDS 244327..245094 /gene="yafJ" /locus_tag="b0223" /gene_synonym="ECK0224; JW0213" /function="putative enzyme; Not classified" /note="putative amidotransferase" /codon_start=1 /transl_table=11 /product="type 2 glutamine amidotransferase family protein" /protein_id="NP_414758.1" /db_xref="GI:16128209" /db_xref="ASAP:ABE-0000755" /db_xref="UniProtKB/Swiss-Prot:Q47147" /db_xref="EcoGene:EG13147" /db_xref="GeneID:944906" /translation="MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGK GCRTFKDPQPSFNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRN WTYAHNGQLTGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIA SLADELRQKGVFNMLLSDGRYVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTT PNDVVTVIATQPLTGNETWQKIMPGEWRLFCLGERVV" gene complement(245065..245805) /gene="yafK" /locus_tag="b0224" /gene_synonym="ECK0225; JW0214" /db_xref="EcoGene:EG13148" /db_xref="GeneID:944910" CDS complement(245065..245805) /gene="yafK" /locus_tag="b0224" /gene_synonym="ECK0225; JW0214" /codon_start=1 /transl_table=11 /product="L,D-transpeptidase-related protein" /protein_id="NP_414759.1" /db_xref="GI:16128210" /db_xref="ASAP:ABE-0000757" /db_xref="UniProtKB/Swiss-Prot:P0AA99" /db_xref="EcoGene:EG13148" /db_xref="GeneID:944910" /translation="MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPV YIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQ LKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTG ALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVN GRYVVSKPLSHEVVQPQLASNYTLPEAK" gene complement(245961..246239) /gene="yafQ" /locus_tag="b0225" /gene_synonym="ECK0226; JW0215" /db_xref="EcoGene:EG13154" /db_xref="GeneID:944911" CDS complement(245961..246239) /gene="yafQ" /locus_tag="b0225" /gene_synonym="ECK0226; JW0215" /codon_start=1 /transl_table=11 /product="mRNA interferase toxin of toxin-antitoxin pair YafQ/DinJ" /protein_id="NP_414760.1" /db_xref="GI:16128211" /db_xref="ASAP:ABE-0000761" /db_xref="UniProtKB/Swiss-Prot:Q47149" /db_xref="EcoGene:EG13154" /db_xref="GeneID:944911" /translation="MIQRDIEYSGQYSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLP AVYKDHPLQGSWKGYRDAHVEPDWILIYKLTDKLLRFERTGTHAALFG" gene complement(246242..246502) /gene="dinJ" /locus_tag="b0226" /gene_synonym="ECK0227; JW0216; sosA" /db_xref="EcoGene:EG13142" /db_xref="GeneID:944914" CDS complement(246242..246502) /gene="dinJ" /locus_tag="b0226" /gene_synonym="ECK0227; JW0216; sosA" /function="phenotype; Not classified" /GO_process="GO:0006281 - DNA repair" /note="damage-inducible protein J" /codon_start=1 /transl_table=11 /product="antitoxin of YafQ-DinJ toxin-antitoxin system" /protein_id="NP_414761.1" /db_xref="GI:16128212" /db_xref="ASAP:ABE-0000764" /db_xref="UniProtKB/Swiss-Prot:Q47150" /db_xref="EcoGene:EG13142" /db_xref="GeneID:944914" /translation="MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVARE KALPFDLREPNQLTIQSIKNSEAGIDVHKAKDADDLFDKLGI" gene 246712..247461 /gene="yafL" /locus_tag="b0227" /gene_synonym="ECK0228; JW0217" /db_xref="EcoGene:EG13149" /db_xref="GeneID:944899" CDS 246712..247461 /gene="yafL" /locus_tag="b0227" /gene_synonym="ECK0228; JW0217" /function="putative membrane; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /note="putative lipoprotein" /codon_start=1 /transl_table=11 /product="putative lipoprotein and C40 family peptidase" /protein_id="NP_414762.1" /db_xref="GI:16128213" /db_xref="ASAP:ABE-0000775" /db_xref="UniProtKB/Swiss-Prot:Q47151" /db_xref="EcoGene:EG13149" /db_xref="GeneID:944899" /translation="MSLPSIPSFVLSGLLLICLPFSSFASATTSHISFSYAARQRMQN RARLLKQYQTHLKKQASYIVEGNAESKRALRQHNREQIKQHPEWFPAPLKASDRRWQA LAENNHFLSSDHLHNITEVAIHRLEQQLGKPYVWGGTRPDKGFDCSGLVFYAYNKILE AKLPRTANEMYHYRRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRT GETIRISRLAEPFWQDHFLGARRILTEETIL" repeat_region 247458..247541 /note="REP18 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene 247637..248134 /gene="rayT" /locus_tag="b0228" /gene_synonym="ECK0229; JW0218; tnpAREP; yafM" /db_xref="EcoGene:EG13150" /db_xref="GeneID:944913" CDS 247637..248134 /gene="rayT" /locus_tag="b0228" /gene_synonym="ECK0229; JW0218; tnpAREP; yafM" /codon_start=1 /transl_table=11 /product="RAYT REP element-mobilizing transposase; TnpA(REP)" /protein_id="NP_414763.1" /db_xref="GI:16128214" /db_xref="ASAP:ABE-0000779" /db_xref="UniProtKB/Swiss-Prot:Q47152" /db_xref="EcoGene:EG13150" /db_xref="GeneID:944913" /translation="MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRHAIIKVKR DRPFEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHA IRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDVTDFSAG ERIIS" repeat_region 248147..248334 /note="REP19 (repetitive extragenic palindromic) element; contains 4 REP sequences" gene complement(248358..250070) /gene="lfhA" /locus_tag="b0229" /gene_synonym="ECK0230; fhiA; JW5811" /pseudo /db_xref="EcoGene:EG13144" /db_xref="GeneID:944908" CDS complement(248358..250070) /gene="lfhA" /locus_tag="b0229" /gene_synonym="ECK0230; fhiA; JW5811" /GO_component="GO:0019861 - flagellum; GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="pseudogene, flagellar system protein, promoterless fragment; flagellar biosynthesis" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0000782" /db_xref="UniProtKB/Swiss-Prot:Q47153" /db_xref="EcoGene:EG13144" /db_xref="GeneID:944908" gene 250072..250827 /gene="lafU" /locus_tag="b0230" /gene_synonym="ECK0231; JW5812; mbhA" /pseudo /db_xref="EcoGene:EG13143" /db_xref="GeneID:944921" CDS 250072..250827 /gene="lafU" /locus_tag="b0230" /gene_synonym="ECK0231; JW5812; mbhA" /GO_process="GO:0042330 - taxis" /note="pseudogene, lateral flagellar motor protein fragment" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0000785" /db_xref="UniProtKB/Swiss-Prot:Q47154" /db_xref="EcoGene:EG13143" /db_xref="GeneID:944921" gene 250898..251953 /gene="dinB" /locus_tag="b0231" /gene_synonym="dinP; ECK0232; JW0221" /db_xref="EcoGene:EG13141" /db_xref="GeneID:944922" CDS 250898..251953 /gene="dinB" /locus_tag="b0231" /gene_synonym="dinP; ECK0232; JW0221" /EC_number="2.7.7.7" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication; GO:0009432 - SOS response" /note="DNA polymerase IV; DNA polymerase IV, devoid of proofreading, damage-inducible protein P" /codon_start=1 /transl_table=11 /product="DNA polymerase IV" /protein_id="NP_414766.1" /db_xref="GI:16128217" /db_xref="ASAP:ABE-0000789" /db_xref="UniProtKB/Swiss-Prot:Q47155" /db_xref="EcoGene:EG13141" /db_xref="GeneID:944922" /translation="MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTA NYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSL DEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNG QFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRFGKF GRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAK VKPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGL HVTLLDPQMERQLVLGL" gene 252005..252298 /gene="yafN" /locus_tag="b0232" /gene_synonym="ECK0233; JW0222" /db_xref="EcoGene:EG13151" /db_xref="GeneID:944920" CDS 252005..252298 /gene="yafN" /locus_tag="b0232" /gene_synonym="ECK0233; JW0222" /codon_start=1 /transl_table=11 /product="antitoxin of the YafO-YafN toxin-antitoxin system" /protein_id="NP_414767.1" /db_xref="GI:16128218" /db_xref="ASAP:ABE-0000793" /db_xref="UniProtKB/Swiss-Prot:Q47156" /db_xref="EcoGene:EG13151" /db_xref="GeneID:944920" /translation="MHRILAEKSVNITELRKNPAKYFIDQPVAVLSNNRPAGYLLSAS AFEALMDMLAEQEEKKPIKARFRPSAARLEEITRRAEQYLNDMTDDDFNDFKE" gene 252301..252699 /gene="yafO" /locus_tag="b0233" /gene_synonym="ECK0234; JW0223" /db_xref="EcoGene:EG13152" /db_xref="GeneID:944916" CDS 252301..252699 /gene="yafO" /locus_tag="b0233" /gene_synonym="ECK0234; JW0223" /codon_start=1 /transl_table=11 /product="mRNA interferase toxin of the YafO-YafN toxin-antitoxin system" /protein_id="NP_414768.1" /db_xref="GI:16128219" /db_xref="ASAP:ABE-0000795" /db_xref="UniProtKB/Swiss-Prot:Q47157" /db_xref="EcoGene:EG13152" /db_xref="GeneID:944916" /translation="MRVFKTKLIRLQLTAEELDALTADFISYKRDGVLPDIFGRDALY DDSFTWPLIKFERVAHIHLANENNPFPPQLRQFSRTNDEAHLVYCQGAFDEQAWLLIA ILKPEPHKLARDNNQMHKIGKMAEAFRMRF" gene 252709..253161 /gene="yafP" /locus_tag="b0234" /gene_synonym="ECK0235; JW0224" /db_xref="EcoGene:EG13153" /db_xref="GeneID:944912" CDS 252709..253161 /gene="yafP" /locus_tag="b0234" /gene_synonym="ECK0235; JW0224" /codon_start=1 /transl_table=11 /product="GNAT family putative N-acetyltransferase" /protein_id="NP_414769.1" /db_xref="GI:16128220" /db_xref="ASAP:ABE-0000801" /db_xref="UniProtKB/Swiss-Prot:Q47158" /db_xref="EcoGene:EG13153" /db_xref="GeneID:944912" /translation="MNNIQIRNYQPGDFQQLCAIFIRAVTMTASQHYSPQQISAWAQI DESRWKEKLAKSQVWVAIINAQPVGFISRIEHYIDMLFVDPEYTRRGVASALLKPLIK SESELTVDASITAKPFFERYGFQTVKQQRVECRGAWFTNFYMRYKPQH" gene 253479..253685 /gene="ykfJ" /locus_tag="b0235" /gene_synonym="ECK0236; JW0225" /pseudo /db_xref="EcoGene:EG14368" /db_xref="GeneID:944924" CDS 253479..253685 /gene="ykfJ" /locus_tag="b0235" /gene_synonym="ECK0236; JW0225" /note="pseudogene" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0000805" /db_xref="UniProtKB/Swiss-Prot:P75675" /db_xref="EcoGene:EG14368" /db_xref="GeneID:944924" gene 253702..254202 /gene="prfH" /locus_tag="b0236" /gene_synonym="ECK0237; JW0226" /pseudo /db_xref="EcoGene:EG11496" /db_xref="GeneID:947374" CDS 253702..254202 /gene="prfH" /locus_tag="b0236" /gene_synonym="ECK0237; JW0226" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006412 - translation" /note="pseudogene, RF-1 domain family; probable peptide chain release factor" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0000807" /db_xref="UniProtKB/Swiss-Prot:P28369" /db_xref="EcoGene:EG11496" /db_xref="GeneID:947374" repeat_region 254217..254244 /note="REP20 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(254259..255716) /gene="pepD" /locus_tag="b0237" /gene_synonym="ECK0238; JW0227; pepH" /db_xref="EcoGene:EG10695" /db_xref="GeneID:945013" CDS complement(254259..255716) /gene="pepD" /locus_tag="b0237" /gene_synonym="ECK0238; JW0227; pepH" /EC_number="3.4.13.18" /function="enzyme; Degradation of proteins, peptides, glyco" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="aminoacyl-histidine dipeptidase (peptidase D)" /protein_id="NP_414772.1" /db_xref="GI:16128223" /db_xref="ASAP:ABE-0000809" /db_xref="UniProtKB/Swiss-Prot:P15288" /db_xref="EcoGene:EG10695" /db_xref="GeneID:945013" /translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKG FHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDG EWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQGNWL QADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGG EIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDVL KSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRN SDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA KGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIG PTITGPHSPDEQVHIESVGHYWTLLTELLKEIPAK" gene 255977..256435 /gene="gpt" /locus_tag="b0238" /gene_synonym="ECK0239; gpp; gxu; JW0228" /db_xref="EcoGene:EG10414" /db_xref="GeneID:944817" CDS 255977..256435 /gene="gpt" /locus_tag="b0238" /gene_synonym="ECK0239; gpp; gxu; JW0228" /EC_number="2.4.2.22" /function="enzyme; Salvage of nucleosides and nucleotides" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="xanthine phosphoribosyltransferase; xanthine-guanine phosphoribosyltransferase" /protein_id="NP_414773.1" /db_xref="GI:16128224" /db_xref="ASAP:ABE-0000814" /db_xref="UniProtKB/Swiss-Prot:P0A9M5" /db_xref="EcoGene:EG10414" /db_xref="GeneID:944817" /translation="MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGA LLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIRE MYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR" gene 256527..257771 /gene="frsA" /locus_tag="b0239" /gene_synonym="ECK0240; JW0229; yafA" /db_xref="EcoGene:EG11091" /db_xref="GeneID:946039" CDS 256527..257771 /gene="frsA" /locus_tag="b0239" /gene_synonym="ECK0240; JW0229; yafA" /codon_start=1 /transl_table=11 /product="fermentation-respiration switch protein; PTS Enzyme IIA(Glc)-binding protein; pNP-butyrate esterase activity" /protein_id="NP_414774.1" /db_xref="GI:16128225" /db_xref="ASAP:ABE-0000817" /db_xref="UniProtKB/Swiss-Prot:P04335" /db_xref="EcoGene:EG11091" /db_xref="GeneID:946039" /translation="MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTI PHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWA TQAMVWQQKACAEDDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEA AQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYF APRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGA NVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDEA LRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFN PVYRNFDKGLQEITDWIEKRLC" gene join(257829..257899,258676..259006) /gene="crl" /locus_tag="b0240" /gene_synonym="ECK0241; JW0230" /pseudo /db_xref="EcoGene:EG11092" /db_xref="GeneID:945077" CDS join(257829..257899,258676..259006) /gene="crl" /locus_tag="b0240" /gene_synonym="ECK0241; JW0230" /GO_component="GO:0005737 - cytoplasm; GO:0009289 - pilus" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="pseudogene, sigma factor-binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0000821" /db_xref="UniProtKB/Swiss-Prot:P24251" /db_xref="EcoGene:EG11092" /db_xref="GeneID:945077" mobile_element complement(257908..258675) /mobile_element_type="insertion sequence:IS1I" repeat_region 259016..259036 /note="REP21 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(259045..260100) /gene="phoE" /locus_tag="b0241" /gene_synonym="ECK0242; JW0231; ompE" /db_xref="EcoGene:EG10729" /db_xref="GeneID:944926" CDS complement(259045..260100) /gene="phoE" /locus_tag="b0241" /gene_synonym="ECK0242; JW0231; ompE" /function="membrane; Outer membrane constituents" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="outer membrane pore protein E (E,Ic,NmpAB)" /codon_start=1 /transl_table=11 /product="outer membrane phosphoporin protein E" /protein_id="NP_414776.1" /db_xref="GI:16128227" /db_xref="ASAP:ABE-0000823" /db_xref="UniProtKB/Swiss-Prot:P02932" /db_xref="EcoGene:EG10729" /db_xref="GeneID:944926" /translation="MKKSTLALVVMGIVASASVQAAEIYNKDGNKLDVYGKVKAMHYM SDNASKDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGL KYKDLGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFF GVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQN LQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQF DFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNK LNINNDDIVAVGMTYQF" gene 260388..261491 /gene="proB" /locus_tag="b0242" /gene_synonym="ECK0243; JW0232; pro" /db_xref="EcoGene:EG10768" /db_xref="GeneID:946425" CDS 260388..261491 /gene="proB" /locus_tag="b0242" /gene_synonym="ECK0243; JW0232; pro" /EC_number="2.7.2.11" /function="enzyme; Amino acid biosynthesis: Proline" /experiment="N-terminus verified by Edman degradation: PMID 6089111" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006561 - proline biosynthetic process" /codon_start=1 /transl_table=11 /product="gamma-glutamate kinase" /protein_id="NP_414777.1" /db_xref="GI:16128228" /db_xref="ASAP:ABE-0000830" /db_xref="UniProtKB/Swiss-Prot:P0A7B5" /db_xref="EcoGene:EG10768" /db_xref="GeneID:946425" /translation="MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHR IVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQML LTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILA GADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKL QAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAG EITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDA LRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR" gene 261503..262756 /gene="proA" /locus_tag="b0243" /gene_synonym="ECK0244; JW0233; pro" /db_xref="EcoGene:EG10767" /db_xref="GeneID:946680" CDS 261503..262756 /gene="proA" /locus_tag="b0243" /gene_synonym="ECK0244; JW0233; pro" /EC_number="1.2.1.41" /function="enzyme; Amino acid biosynthesis: Proline" /experiment="N-terminus verified by Edman degradation: PMID 6089111" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006561 - proline biosynthetic process" /codon_start=1 /transl_table=11 /product="gamma-glutamylphosphate reductase" /protein_id="NP_414778.1" /db_xref="GI:16128229" /db_xref="ASAP:ABE-0000832" /db_xref="UniProtKB/Swiss-Prot:P07004" /db_xref="EcoGene:EG10767" /db_xref="GeneID:946680" /translation="MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILN ANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSG LRLERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQ DALKSCGLPAGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVI TGGIGVCHIYVDESVEIAEALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQ MAESGVTLHADAAALAQLQAGPAKVVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIR EHGTQHSDAILTRDMRNAQRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLH ARGPMGLEALTTYKWIGIGDYTIRA" gene 262871..262946 /gene="thrW" /locus_tag="b0244" /gene_synonym="ECK0245; JWR0008" /db_xref="EcoGene:EG30104" /db_xref="GeneID:947202" tRNA 262871..262946 /gene="thrW" /locus_tag="b0244" /gene_synonym="ECK0245; JWR0008" /product="tRNA-Thr" /note="anticodon: CGU" /db_xref="ASAP:ABE-0000834" /db_xref="EcoGene:EG30104" /db_xref="GeneID:947202" misc_feature 262958..297265 /note="cryptic prophage CP4-6" gene complement(263150..263212) /gene="ykfN" /locus_tag="b4626" /gene_synonym="ECK4458" /pseudo /db_xref="EcoGene:EG14454" /db_xref="GeneID:5625552" CDS complement(263150..263212) /gene="ykfN" /locus_tag="b4626" /gene_synonym="ECK4458" /note="pseudogene, YdiA family" /pseudo /codon_start=1 /transl_table=11 /db_xref="EcoGene:EG14454" /db_xref="GeneID:5625552" gene complement(263328..263669) /gene="ykfI" /locus_tag="b0245" /gene_synonym="ECK0246; JW0234" /db_xref="EcoGene:EG14333" /db_xref="GeneID:946726" CDS complement(263328..263669) /gene="ykfI" /locus_tag="b0245" /gene_synonym="ECK0246; JW0234" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; toxin of the YkfI-YafW toxin-antitoxin system" /protein_id="NP_414779.1" /db_xref="GI:16128230" /db_xref="ASAP:ABE-0000836" /db_xref="UniProtKB/Swiss-Prot:P77692" /db_xref="EcoGene:EG14333" /db_xref="GeneID:946726" /translation="MKTLPAITQRAVKPCLSPVAVWQMLLTRLLEQHYGLTINDTPFC NEAVIKEHIDAGITLADAVNFLVEKYELVRIDRKGFSWQEQSPYLRAADILRARQATG LLRQSRNNVVR" gene complement(263690..264007) /gene="yafW" /locus_tag="b0246" /gene_synonym="ECK0247; JW0235" /db_xref="EcoGene:EG13335" /db_xref="GeneID:944929" CDS complement(263690..264007) /gene="yafW" /locus_tag="b0246" /gene_synonym="ECK0247; JW0235" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; antitoxin of the YkfI-YafW toxin-antitoxin system" /protein_id="NP_414780.1" /db_xref="GI:16128231" /db_xref="ASAP:ABE-0000838" /db_xref="UniProtKB/Swiss-Prot:Q47684" /db_xref="EcoGene:EG13335" /db_xref="GeneID:944929" /translation="MSNPTRGLQREITLRLGARLVQEGNRLHYLADRASITGKFSDIE CRKLDETFPHFILQMESMLTTGELSPHHAHCVTLYHNDLTCEADTLGSCGYVYIAIYP TQR" gene complement(264026..264247) /gene="ykfH" /locus_tag="b4504" /gene_synonym="ECK0248; JW5956" /db_xref="EcoGene:EG14332" /db_xref="GeneID:1450236" CDS complement(264026..264247) /gene="ykfH" /locus_tag="b4504" /gene_synonym="ECK0248; JW5956" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_588435.1" /db_xref="GI:94541094" /db_xref="ASAP:ABE-0285025" /db_xref="UniProtKB/Swiss-Prot:Q9XB42" /db_xref="EcoGene:EG14332" /db_xref="GeneID:1450236" /translation="MKIISKRRAMTIYRQHPESRIFRYCTGKYQWHGSVCHYTGRDVP DIAGVLAVYAERRQDRNGPYTCLMSITLN" gene complement(264256..264732) /gene="ykfG" /locus_tag="b0247" /gene_synonym="ECK0249; JW0236" /db_xref="EcoGene:EG14331" /db_xref="GeneID:944930" CDS complement(264256..264732) /gene="ykfG" /locus_tag="b0247" /gene_synonym="ECK0249; JW0236" /function="Phage or Prophage Related" /note="putative DNA repair protein" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; RadC-like JAB domain protein" /protein_id="NP_414781.1" /db_xref="GI:16128232" /db_xref="ASAP:ABE-0000841" /db_xref="UniProtKB/Swiss-Prot:Q47685" /db_xref="EcoGene:EG14331" /db_xref="GeneID:944930" /translation="MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVR EWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGTINRTEVHPREVVKRALHFNAAA VILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL" gene complement(264748..265206) /gene="yafX" /locus_tag="b0248" /gene_synonym="ECK0250; JW5022" /db_xref="EcoGene:EG13336" /db_xref="GeneID:944931" CDS complement(264748..265206) /gene="yafX" /locus_tag="b0248" /gene_synonym="ECK0250; JW5022" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; uncharacterized protein" /protein_id="NP_414782.1" /db_xref="GI:16128233" /db_xref="ASAP:ABE-0000843" /db_xref="UniProtKB/Swiss-Prot:P75676" /db_xref="EcoGene:EG13336" /db_xref="GeneID:944931" /translation="MTTQTQHDLAPANQPEFELTVTPVPDEQRIDFWPQYFGAIPQWL LLEPHIFAWMDRFCEGYSGGIWSFYTLSNGGAFMSPEPDNDETWRLFNCLNGNDAQMS AEAAGIAVCLIAYSHHACRTECDAMTAHYYRLREYAMQHPEAHAILRIID" gene complement(265304..265543) /gene="ykfF" /locus_tag="b0249" /gene_synonym="ECK0251; JW5023" /db_xref="EcoGene:EG14283" /db_xref="GeneID:948839" CDS complement(265304..265543) /gene="ykfF" /locus_tag="b0249" /gene_synonym="ECK0251; JW5023" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; uncharacterized protein" /protein_id="NP_414783.1" /db_xref="GI:16128234" /db_xref="ASAP:ABE-0000846" /db_xref="UniProtKB/Swiss-Prot:P75677" /db_xref="EcoGene:EG14283" /db_xref="GeneID:948839" /translation="MTQSVLLPPGPFTRRQAQAVTTTYSNITLEDDQGSHFRLVVRDT EGRMVWRAWNFEPDAGEGLNRYIRTSGIRTDTATR" gene complement(265620..266087) /gene="ykfB" /locus_tag="b0250" /gene_synonym="ECK0252; JW0239" /db_xref="EcoGene:EG13548" /db_xref="GeneID:946846" CDS complement(265620..266087) /gene="ykfB" /locus_tag="b0250" /gene_synonym="ECK0252; JW0239" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; uncharacterized protein" /protein_id="NP_414784.1" /db_xref="GI:16128235" /db_xref="ASAP:ABE-0000851" /db_xref="UniProtKB/Swiss-Prot:P77162" /db_xref="EcoGene:EG13548" /db_xref="GeneID:946846" /translation="MTILSLSRFMLAGVLLASFNASAIPGFWQQGYGQGNTEYSVTEA SGKTFTINCTGNPDQNGFYQHSVFLTLADDKMVSSHDDDTTITVVMDHQQYIIPSSLG WRNGDNAWFDFISNISEAGQFDVYVNDHKAGTFTADRKNAEKVLSTLGDCSND" gene complement(266110..266553) /gene="yafY" /locus_tag="b0251" /gene_synonym="ECK0253; JW0240" /db_xref="EcoGene:EG13337" /db_xref="GeneID:944934" CDS complement(266110..266553) /gene="yafY" /locus_tag="b0251" /gene_synonym="ECK0253; JW0240" /function="Phage or Prophage Related" /note="hypothetical transcriptional regulator" /codon_start=1 /transl_table=11 /product="lipoprotein, inner membrane; degP regulator; CP4-6 prophage" /protein_id="NP_414785.4" /db_xref="GI:145698221" /db_xref="ASAP:ABE-0000853" /db_xref="UniProtKB/Swiss-Prot:P77365" /db_xref="EcoGene:EG13337" /db_xref="GeneID:944934" /translation="MKRKTLPLLALVATTLFLIACDDRSDDLKAISKFKDLTPPRFSD VVSHQDDVSEEWSQVDYLSGPTLQVLRTRQSPDGCEDGSYYYLVDMQEKTVQPLMNAL CIADNIKLEYQEVTDPYTKEKYFEYAHDGKLMGQLLIPSNPDNQE" gene complement(266553..266774) /gene="ykfL" /locus_tag="b4627" /gene_synonym="ECK4445" /pseudo /db_xref="EcoGene:EG14378" /db_xref="GeneID:5625553" CDS complement(266553..266774) /gene="ykfL" /locus_tag="b4627" /gene_synonym="ECK4445" /note="pseudogene, CP4-6 putative prophage remnant;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="EcoGene:EG14378" /db_xref="GeneID:5625553" gene complement(266776..266967) /gene="ykfK" /locus_tag="b4628" /gene_synonym="ECK4444; yafY" /pseudo /db_xref="EcoGene:EG14377" /db_xref="GeneID:5625554" CDS complement(266776..266967) /gene="ykfK" /locus_tag="b4628" /gene_synonym="ECK4444; yafY" /note="CP4-6 prophage; putative DNA-binding transcriptional regulator;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="EcoGene:EG14377" /db_xref="GeneID:5625554" gene complement(267184..268005) /gene="yafZ" /locus_tag="b0252" /gene_synonym="ECK0254; JW0242" /db_xref="EcoGene:EG13338" /db_xref="GeneID:945373" CDS complement(267184..268005) /gene="yafZ" /locus_tag="b0252" /gene_synonym="ECK0254; JW0242" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; conserved protein" /protein_id="NP_414786.4" /db_xref="GI:90111102" /db_xref="ASAP:ABE-0000856" /db_xref="UniProtKB/Swiss-Prot:P77206" /db_xref="EcoGene:EG13338" /db_xref="GeneID:945373" /translation="MTRLASRFGAANLIRRDRPLTREELFRVVPSVFSEDKHESRSER YTYIPTISLLDSLQREGFQPFFACQTRVRDPGRREHTKHMLRLRREGQITGKQVPEII LLNSHDGTSSYQMLPGLFRAVCQNGLVCGESFGEVRVPHKGDVVSQVIEGAYEVLGIF DRVEEKRDAMQSLLLPPPAQQALAKAALTYRFGEDHQPVTESQILSPRRWQDESNDLW TTYQRIQENLIKGGLSGRNAKGGRSHTRAVRGIDGDVKLNRALWVMAEALLTQLQ" gene complement(268097..268960) /gene="ykfA" /locus_tag="b0253" /gene_synonym="ECK0255; JW0243" /db_xref="EcoGene:EG13339" /db_xref="GeneID:949004" CDS complement(268097..268960) /gene="ykfA" /locus_tag="b0253" /gene_synonym="ECK0255; JW0243" /function="Phage or Prophage Related" /note="putative GTP-binding protein" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; putative GTP-binding protein" /protein_id="NP_414787.4" /db_xref="GI:90111103" /db_xref="ASAP:ABE-0000858" /db_xref="UniProtKB/Swiss-Prot:P75678" /db_xref="EcoGene:EG13339" /db_xref="GeneID:949004" /translation="MNNSEGLKSFQQSLADLPQWVSERLLQQINQLTNYEPVIGIMGK TGVGKSSLCNALFAGDISPVSDVAACTREPLRFRLQVGDRYITLMDLPGVGESGARDT EYAALYREQLPRLDLVLWLIKADDRALTVDEHFYHQVIGEVYRHKVLFVISQSDKAEP TSGGGQLSTAQKQNISRKICLLHELFQPVHPVCAVSVRLQWGLKVMAERMIKCLPREA TSPVVSQLHPSFRTTVVREQARSDFGETVGAVLDSISAFPLIPAPVRAVIQAVRTTVV SVARAVWDFFF" gene complement(269289..270182) /gene="perR" /locus_tag="b0254" /gene_synonym="ECK0256; JW0244" /db_xref="EcoGene:EG13340" /db_xref="GeneID:945417" CDS complement(269289..270182) /gene="perR" /locus_tag="b0254" /gene_synonym="ECK0256; JW0244" /function="Phage or Prophage Related" /note="peroxide resistance protein" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; putative DNA-binding transcriptional regulator" /protein_id="NP_414788.1" /db_xref="GI:16128239" /db_xref="ASAP:ABE-0000862" /db_xref="UniProtKB/Swiss-Prot:Q57083" /db_xref="EcoGene:EG13340" /db_xref="GeneID:945417" /translation="MKLLAKAPLNLLRAFEAAGRTGAFALAASELELSPSAISHAIRK LENLLDVRLFQRSTREITLTKEGEILLEHIQRGFNELQQGLALVTADESRPLRLHTAP SFAHQWLLPRLGKFIRENPSIDLRLSASTEYARFEQDDFDLDIVYGEPRPSPYEKIPL AVEELTPLCSPQLAERLKKPEDLYALTLIQCDVQLYQWKGWFEANKMTPPNNYGLRFD RSFMAIAAAVDGLGVVLESKLLAEREIASGKLVCPLVNSTSEIHYIGHYLVFPQHQHM HSALDVFKTWLLNELNLGKIR" mobile_element 270206..270540 /mobile_element_type="insertion sequence:IS911A" gene join(270278..270535,271764..272189) /gene="insN" /locus_tag="b4587" /gene_synonym="ECK0257; insN1; insO; ORFAB" /pseudo /db_xref="EcoGene:EG40014" /db_xref="GeneID:5061501" CDS join(270278..270535,271764..272189) /gene="insN" /locus_tag="b4587" /gene_synonym="ECK0257; insN1; insO; ORFAB" /experiment="N-terminus verified by Edman degradation: PMID 1660923" /note="pseudogene, IS911 transposase A;IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0000867" /db_xref="UniProtKB/Swiss-Prot:P75679" /db_xref="EcoGene:EG40014" /db_xref="GeneID:5061501" mobile_element 270541..271761 /mobile_element_type="insertion sequence:IS30A" gene 270603..271754 /gene="insI1" /locus_tag="b0256" /gene_synonym="ECK0258" /db_xref="EcoGene:EG40009" /db_xref="GeneID:949005" CDS 270603..271754 /gene="insI1" /locus_tag="b0256" /gene_synonym="ECK0258" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS30 transposase" /protein_id="NP_414790.1" /db_xref="GI:16128241" /db_xref="ASAP:ABE-0000871" /db_xref="UniProtKB/Swiss-Prot:P0CF88" /db_xref="EcoGene:EG40009" /db_xref="GeneID:949005" /translation="MRRTFTAEEKASVFELWKNGTGFSEIANILGSKPGTIFTMLRDT GGIKPHERKRAVAHLTLSEREEIRAGLSAKMSIRAIATALNRSPSTISREVQRNRGRR YYKAVDANNRANRMAKRPKPCLLDQNLPLRKLVLEKLEMKWSPEQISGWLRRTKPRQK TLRISPETIYKTLYFRSREALHHLNIQHLRRSHSLRHGRRHTRKGERGTINIVNGTPI HERSRNIDNRRSLGHWEGDLVSGTKNSHIATLVDRKSRYTIIVRLRGKDSVSVNQALT DKFLSLPSELRKSLTWDRGMELARHLEFTVSTGVKVYFCDPQSPWQRGTNENTNGLIR QYFPKKTCLAQYTQHELDLVAAQLNNRPRKTLKFKTPKEIIERGVALTD" mobile_element 271762..272190 /mobile_element_type="insertion sequence:IS911A" gene 272580..272654 /gene="eyeA" /locus_tag="b4690" /gene_synonym="ECK4506; I001" /db_xref="EcoGene:EG31183" /db_xref="GeneID:7751631" ncRNA 272580..272654 /ncRNA_class="other" /gene="eyeA" /locus_tag="b4690" /gene_synonym="ECK4506; I001" /product="novel sRNA, function unknown, CP4-6 propahge" /db_xref="EcoGene:EG31183" /db_xref="GeneID:7751631" gene 272847..273954 /gene="ykfC" /locus_tag="b0258" /gene_synonym="ECK0260; JW5813" /pseudo /db_xref="EcoGene:EG13341" /db_xref="GeneID:944940" CDS 272847..273954 /gene="ykfC" /locus_tag="b0258" /gene_synonym="ECK0260; JW5813" /note="CP4-6 prophage; conserved protein;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0000885" /db_xref="UniProtKB/Swiss-Prot:Q47688" /db_xref="EcoGene:EG13341" /db_xref="GeneID:944940" mobile_element complement(273955..275149) /mobile_element_type="insertion sequence:IS5A" gene complement(274101..275117) /gene="insH1" /locus_tag="b0259" /gene_synonym="ECK0261" /db_xref="EcoGene:EG40008" /db_xref="GeneID:944941" CDS complement(274101..275117) /gene="insH1" /locus_tag="b0259" /gene_synonym="ECK0261" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS5 transposase and trans-activator" /protein_id="NP_414793.1" /db_xref="GI:16128244" /db_xref="ASAP:ABE-0000888" /db_xref="UniProtKB/Swiss-Prot:P0CE49" /db_xref="EcoGene:EG40008" /db_xref="GeneID:944941" /translation="MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQIL PWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLF ARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIE APSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQL GNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINI EYMKASIRARVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRADQMIRQW ERSH" gene 275325..276728 /gene="mmuP" /locus_tag="b0260" /gene_synonym="ECK0262; JW5027; ykfD" /db_xref="EcoGene:EG13342" /db_xref="GeneID:946284" CDS 275325..276728 /gene="mmuP" /locus_tag="b0260" /gene_synonym="ECK0262; JW5027; ykfD" /function="Phage or Prophage Related" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009086 - methionine biosynthetic process" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; putative S-methylmethionine transporter" /protein_id="NP_414794.4" /db_xref="GI:90111105" /db_xref="ASAP:ABE-0000893" /db_xref="UniProtKB/Swiss-Prot:Q47689" /db_xref="EcoGene:EG13342" /db_xref="GeneID:946284" /translation="MQTTQQNAPLKRTMKTRHLIMLSLGGVIGTGLFFNTGYIISTTG AAGTLLAYLIGALVVWLVMQCLGELSVAMPETGAFHVYAARYLGPATGYTVAWLYWLT WTVALGSSFTAAGFCMQYWFPQVPVWVWCVVFCAIIFGLNVISTRFFAEGEFWFSLVK VVTIIAFIILGGAAIFGFIPMQDGSPAPGLSNITAEGWFPHGGLPILMTMVAVNFAFS GTELIGIAAGETENPRKVIPVAIRTTIARLIIFFIGTVFVLAALIPMQQVGVEKSPFV LVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNERTLPACFARVTKNG VPLTALSVSMLGGVLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFVFRRRHL QQGKALSELHYRAPWYPLVPVLGFVLCLVACVGLAFDPAQRIALWCGLPFVALCYGAY FLTQPRNAKQEPEHVAE" gene 276715..277647 /gene="mmuM" /locus_tag="b0261" /gene_synonym="ECK0263; JW0253; yagD" /db_xref="EcoGene:EG13343" /db_xref="GeneID:946143" CDS 276715..277647 /gene="mmuM" /locus_tag="b0261" /gene_synonym="ECK0263; JW0253; yagD" /EC_number="2.1.1.10" /function="Phage or Prophage Related" /GO_process="GO:0006071 - glycerol metabolic process; GO:0009086 - methionine biosynthetic process" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; S-methylmethionine:homocysteine methyltransferase" /protein_id="NP_414795.1" /db_xref="GI:16128246" /db_xref="ASAP:ABE-0000895" /db_xref="UniProtKB/Swiss-Prot:Q47690" /db_xref="EcoGene:EG13343" /db_xref="GeneID:946143" /translation="MSQNNPLRALLDKQDILLLDGAMATELEARGCNLADSLWSAKVL VENPELIREVHLDYYRAGAQCAITASYQATPAGFAARGLDEAQSKALIGKSVELARKA REAYLAENPQAGTLLVAGSVGPYGAYLADGSEYRGDYHCSVEAFQAFHRPRVEALLDA GADLLACETLPNFSEIEALAELLTAYPRARAWFSFTLRDSEHLSDGTPLRDVVALLAG YPQVVALGINCIALENTTAALQHLHGLTVLPLVVYPNSGEHYDAVSKTWHHHGEHCAQ LADYLPQWQAAGARLIGGCCRTTPADIAALKARS" repeat_region 277675..277741 /note="REP22 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(277756..278802) /gene="afuC" /locus_tag="b0262" /gene_synonym="ECK0264; fbpC; JW0254; yagC" /db_xref="EcoGene:EG12340" /db_xref="GeneID:947676" CDS complement(277756..278802) /gene="afuC" /locus_tag="b0262" /gene_synonym="ECK0264; fbpC; JW0254; yagC" /function="putative transport; Not classified; Phage or Prophage Related" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; putative ferric transporter subunit" /protein_id="NP_414796.2" /db_xref="GI:90111106" /db_xref="ASAP:ABE-0000898" /db_xref="UniProtKB/Swiss-Prot:P37009" /db_xref="EcoGene:EG12340" /db_xref="GeneID:947676" /translation="MTQKNFVELRNVTKRFGSNTVIDNINLTIPQGQMVTLLGPSGCG KTTILRLVAGLEKPSEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYG LKMLGVPRAELKARVKEALAMVDLEGFEDRFVDQISGGQQQRVALARALILKPKVLLF DEPLSNLDANLRRSMRDKIRELQKQFDITSLYVTHDQSEAFAVSDTVLVMNKGHIMQI GSPQDLYRQPASRFMASFMGDANLFPATFSDGYVDIYGYHLPRPLHFGTQGEGMVGVR PEAITLSDRGEESQRCVIRHVAYMGPQYEVTVEWHGQEILLQVNATRLQPDVGEQYYL EIHPYGMFVLADAA" gene complement(278814..279161) /gene="afuB" /locus_tag="b0263" /gene_synonym="ECK0265; fbpB; JW0255" /pseudo /db_xref="EcoGene:EG14277" /db_xref="GeneID:947073" CDS complement(278814..279161) /gene="afuB" /locus_tag="b0263" /gene_synonym="ECK0265; fbpB; JW0255" /note="pseudogene, CP4-6 prophage; ferric iron ABC transporter permease gene fragment;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0000900" /db_xref="UniProtKB/Swiss-Prot:P75681" /db_xref="EcoGene:EG14277" /db_xref="GeneID:947073" mobile_element complement(279163..279930) /mobile_element_type="insertion sequence:IS1B" gene complement(279178..279681) /gene="insB1" /locus_tag="b0264" /gene_synonym="ECK0022" /db_xref="EcoGene:EG40002" /db_xref="GeneID:947698" CDS complement(279178..279681) /gene="insB1" /locus_tag="b0264" /gene_synonym="ECK0022" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS1 transposase B" /protein_id="NP_414798.1" /db_xref="GI:16128249" /db_xref="ASAP:ABE-0000906" /db_xref="UniProtKB/Swiss-Prot:P0CF26" /db_xref="EcoGene:EG40002" /db_xref="GeneID:947698" /translation="MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMD EQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVEQHDKVIGHY LNIKHYQ" gene complement(279600..279875) /gene="insA" /locus_tag="b0265" /gene_synonym="ECK4521" /note="insA2" /db_xref="EcoGene:EG40001" /db_xref="GeneID:944946" CDS complement(279600..279875) /gene="insA" /locus_tag="b0265" /gene_synonym="ECK4521" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS1 repressor TnpA" /protein_id="NP_414799.1" /db_xref="GI:16128250" /db_xref="ASAP:ABE-0000909" /db_xref="UniProtKB/Swiss-Prot:P0CF08" /db_xref="EcoGene:EG40001" /db_xref="GeneID:944946" /translation="MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSR" mobile_element 279931..280111 /mobile_element_type="insertion sequence:IS30B" gene 279931..280104 /gene="insI1" /locus_tag="b4708" /gene_synonym="ECK0258" /pseudo /db_xref="EcoGene:EG40009" /db_xref="GeneID:14678508" CDS 279931..280104 /gene="insI1" /locus_tag="b4708" /gene_synonym="ECK0258" /note="IS30 transposase;IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /pseudo /codon_start=1 /transl_table=11 /db_xref="EcoGene:EG40009" /db_xref="GeneID:14678508" mobile_element complement(280114..280425) /mobile_element_type="insertion sequence:ISX" gene complement(280114..280362) /gene="insX" /locus_tag="b4505" /gene_synonym="ECK4473; ykgN" /pseudo /db_xref="EcoGene:EG14418" /db_xref="GeneID:1450237" CDS complement(280114..280362) /gene="insX" /locus_tag="b4505" /gene_synonym="ECK4473; ykgN" /note="pseudogene, IS3 family transposase family" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0285026" /db_xref="UniProtKB/Swiss-Prot:Q79E92" /db_xref="EcoGene:EG14418" /db_xref="GeneID:1450237" gene complement(280427..280735) /gene="yagB" /locus_tag="b0266" /gene_synonym="ECK0267; JW0259" /pseudo /db_xref="EcoGene:EG12339" /db_xref="GeneID:944944" CDS complement(280427..280735) /gene="yagB" /locus_tag="b0266" /gene_synonym="ECK0267; JW0259" /note="pseudogene, CP4-6 prophage;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0000912" /db_xref="UniProtKB/Swiss-Prot:P37008" /db_xref="EcoGene:EG12339" /db_xref="GeneID:944944" gene complement(280829..281983) /gene="yagA" /locus_tag="b0267" /gene_synonym="ECK0268; JW0260" /db_xref="EcoGene:EG12338" /db_xref="GeneID:944937" CDS complement(280829..281983) /gene="yagA" /locus_tag="b0267" /gene_synonym="ECK0268; JW0260" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; putative DNA-binding transcriptional regulator" /protein_id="NP_414801.1" /db_xref="GI:16128252" /db_xref="ASAP:ABE-0000915" /db_xref="UniProtKB/Swiss-Prot:P37007" /db_xref="EcoGene:EG12338" /db_xref="GeneID:944937" /translation="MESLMPWDARDTMSLRTEFVLFASQDGANIRSLCRRFGISPATG YKWLQRWAQEGAAGLQDRPRIPHHSPNRSSDDITALLRMAHDRHERWGARKIKRWLED QGHTMPAFSTVHNLMARHGLLPGASPGIPATGRFEHDAPNRLWQMDFKGHFPFGGGRC HPLTLLDDHSRFSLCLAHCTDERRETVQQQLVSVFERYGLPDRMTMDNGSPWGDTTGT WTALELWLMRLGIRVGHSRPYHPQTQGKLERFHRSLKAEVLQGKWFADSGELQRAFDH WRTVYNLERPHEALDMAVPGSRYQPSARQYSGNTTPPEYDEGVMVRKVDISGKLSVKG VSLSAGKAFRGERVGLKEMQEDGSYEVWWYSTKVGVIDLKKKSITMGKGC" gene 282278..283186 /gene="yagE" /locus_tag="b0268" /gene_synonym="ECK0269; JW0261" /db_xref="EcoGene:EG13344" /db_xref="GeneID:944925" CDS 282278..283186 /gene="yagE" /locus_tag="b0268" /gene_synonym="ECK0269; JW0261" /function="Phage or Prophage Related" /note="putative lyase/synthase" /codon_start=1 /transl_table=11 /product="2-keto-3-deoxy gluconate (KDG) aldolase; CP4-6 prophage" /protein_id="NP_414802.2" /db_xref="GI:345452715" /db_xref="ASAP:ABE-0000921" /db_xref="UniProtKB/Swiss-Prot:P75682" /db_xref="EcoGene:EG13344" /db_xref="GeneID:944925" /translation="MPQSALFTGIIPPVSTIFTADGQLDKPGTAALIDDLIKAGVDGL FFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGA DGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADSR SNIIGIKDTIDSVAHLRSMIHTVKGAHPHFTVLCGYDDHLFNTLLLGGDGAISASGNF APQVSVNLLKAWRDGDVAKAAGYHQTLLQIPQMYQLDTPFVNVIKEAIVLCGRPVSTH VLPPASPLDEPRKAQLKTLLQQLKLC" gene 283201..285168 /gene="yagF" /locus_tag="b0269" /gene_synonym="ECK0270; JW0262" /db_xref="EcoGene:EG13345" /db_xref="GeneID:944928" CDS 283201..285168 /gene="yagF" /locus_tag="b0269" /gene_synonym="ECK0270; JW0262" /function="Phage or Prophage Related" /note="putative dehydratase" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; dehydratase family protein" /protein_id="NP_414803.1" /db_xref="GI:16128254" /db_xref="ASAP:ABE-0000923" /db_xref="UniProtKB/Swiss-Prot:P77596" /db_xref="EcoGene:EG13345" /db_xref="GeneID:944928" /translation="MTIEKIFTPQDDAFYAVITHAAGPQGALPLTPQMLMESPSGNLF GMTQNAGMGWDANKLTGKEVLIIGTQGGIRAGDGRPIALGYHTGHWEIGMQMQAAAKE ITRNGGIPFAAFVSDPCDGRSQGTHGMFDSLPYRNDAAIVFRRLIRSLPTRRAVIGVA TCDKGLPATMIALAAMHDLPTILVPGGATLPPTVGEDAGKVQTIGARFANHELSLQEA AELGCRACASPGGGCQFLGTAGTSQVVAEALGLALPHSALAPSGQAVWLEIARQSARA VSELDSRGITTRDILSDKAIENAMVIHAAFGGSTNLLLHIPAIAHAAGCTIPDVEHWT RINRKVPRLVSVLPNGPDYHPTVRAFLAGGVPEVMLHLRDLGLLHLDAMTVTGQTVGE NLEWWQASERRARFRQCLREQDGVEPDDVILPPEKAKAKGLTSTVCFPTGNIAPEGSV IKATAIDPSVVGEDGVYHHTGRVRVFVSEAQAIKAIKREEIVQGDIMVVIGGGPSGTG MEETYQLTSALKHISWGKTVSLITDARFSGVSTGACFGHVSPEALAGGPIGKLRDNDI IEIAVDRLTLTGSVNFIGTADNPLTPEEGARELARRQTHPDLHAHDFLPDDTRLWAAL QSVSGGTWKGCIYDTDKIIEVINAGKKALGI" gene 285395..286777 /gene="yagG" /locus_tag="b0270" /gene_synonym="ECK0271; JW0263" /db_xref="EcoGene:EG13346" /db_xref="GeneID:944947" CDS 285395..286777 /gene="yagG" /locus_tag="b0270" /gene_synonym="ECK0271; JW0263" /function="Phage or Prophage Related" /note="putative permease" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; putative sugar transporter" /protein_id="NP_414804.1" /db_xref="GI:16128255" /db_xref="ASAP:ABE-0000929" /db_xref="UniProtKB/Swiss-Prot:P75683" /db_xref="EcoGene:EG13346" /db_xref="GeneID:944947" /translation="MTQLTMKDKIGYGLGDTACGFVWQATMFLLAYFYTDVFGLSAGI MGTLFLVSRVLDAVTDPLMGLLVDRTRTRHGQFRPFLLWGAIPFGIVCVLTFYTPDFS AQGKIIYACVTYILLTLVYTFVNVPYCAMPGVITADPKERHALQSWRFFLAAAGSLAI SGIALPLVSIIGKGDEQVGYFGAMCVLGLSGVVLLYVCFFTTKERYTFEVQPGSSVAK DLKLLLGNSQWRIMCAFKMMATCSNVVRGGATLYFVKYVMDHPELATQFLLYGSLATM FGSLCSSRLLGRFDRVTAFKWIIVAYSLISLLIFVTPAEHIALIFALNILFLFVFNTT TPLQWLMASDVVDYEESRSGRRLDGLVFSTYLFSLKIGLAIGGAVVGWILAYVNYSAS SSVQPVEVLTTIKILFCVVPVVLYAGMFIMLSLYKLTDARVEAISRQLIKHRAAQGEA VPDAATAASH" gene 286789..288399 /gene="yagH" /locus_tag="b0271" /gene_synonym="ECK0272; JW0264" /db_xref="EcoGene:EG13347" /db_xref="GeneID:944949" CDS 286789..288399 /gene="yagH" /locus_tag="b0271" /gene_synonym="ECK0272; JW0264" /function="Phage or Prophage Related" /note="putative beta-xylosidase" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; putative xylosidase/arabinosidase" /protein_id="NP_414805.1" /db_xref="GI:16128256" /db_xref="ASAP:ABE-0000931" /db_xref="UniProtKB/Swiss-Prot:P77713" /db_xref="EcoGene:EG13347" /db_xref="GeneID:944949" /translation="MEITNPILTGFNPDPSLCRQGEDYYIATSTFEWFPGVRIYHSRD LKNWSLVSTPLDRVSMLDMKGNPDSGGIWAPCLSYADGKFWLLYTDVKIVDSPWKNGR NFLVTAPSIEGPWSEPIPMGNGGFDPSLFHDDDGRKYYIYRPWGPRHHSNPHNTIVLQ AFDPQTGTLSPERKTLFTGTPLCYTEGAHLYRHAGWYYLMAAEGGTSYEHAVVVLRSK NIDGPYELHPDVTMMTSWHLPENPLQKSGHGSLLQTHTGEWYMAYLTSRPLRLPGVPL LASGGRGYCPLGRETGIARIEWRDGWPYVEGGKHAQLTVKGPQVAEQPAAVPGNWRDD FDASSLDPELQTLRIPFDDTLGSLTARPGFLRLYGNDSLNSTFTQSTVARRWQHFAFR AETRMEFSPVHFQQSAGLTCYYNSKNWSYCFVDYEEGQGRTIKVIQLDHNVPSWPLHE QPIPVPEHAESVWLRVDVDTLVYRYSYSFDGETWHTVPVTYEAWKLSDDYIGGRGFFT GAFVGLHCEDISGDGCYADFDYFTYEPV" gene complement(288404..289162) /gene="yagI" /locus_tag="b0272" /gene_synonym="ECK0273; JW0265" /db_xref="EcoGene:EG13349" /db_xref="GeneID:945016" CDS complement(288404..289162) /gene="yagI" /locus_tag="b0272" /gene_synonym="ECK0273; JW0265" /function="Phage or Prophage Related" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative regulator" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; putative DNA-binding transcriptional regulator" /protein_id="NP_414806.1" /db_xref="GI:16128257" /db_xref="ASAP:ABE-0000933" /db_xref="UniProtKB/Swiss-Prot:P77300" /db_xref="EcoGene:EG13349" /db_xref="GeneID:945016" /translation="MPIIQSVERALQILDLFNEQATELKITDISKLMGLSKSTLHSLL KTLQLHGYIDQNPENGKYRLGMKLVERGHFVVGSIDIRQKAKGWLTELSRRTGQTTHL GILDGREGVYIEKIEGKLAAIAYSRIGRRLPVHATAIGKVLIAWLGEAELNALLEGYQ YTTFTPATLASREALMSALAQTREQGYALDSEENEQGVRCVAVPVWNHESRVIAALSL STLTSRVDDAELANFREQLQQAGLALSRALGYPA" gene complement(289301..290305) /gene="argF" /locus_tag="b0273" /gene_synonym="Arg5; argD; ECK0274; JW0266" /db_xref="EcoGene:EG10067" /db_xref="GeneID:944844" CDS complement(289301..290305) /gene="argF" /locus_tag="b0273" /gene_synonym="Arg5; argD; ECK0274; JW0266" /EC_number="2.1.3.3" /function="enzyme; Amino acid biosynthesis: Arginine; Phage or Prophage Related" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006526 - arginine biosynthetic process" /note="ornithine carbamoyltransferase 2, chain F" /codon_start=1 /transl_table=11 /product="ornithine carbamoyltransferase 2, chain F; CP4-6 prophage" /protein_id="NP_414807.1" /db_xref="GI:16128258" /db_xref="ASAP:ABE-0000939" /db_xref="UniProtKB/Swiss-Prot:P06960" /db_xref="EcoGene:EG10067" /db_xref="GeneID:944844" /translation="MSDLYKKHFLKLLDFTPAQFTSLLTLAAQLKADKKNGKEVQKLT GKNIALIFEKDSTRTRCSFEVAAFDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYD GIQYRGHGQEVVETLAQYAGVPVWNGLTNEFHPTQLLADLMTMQEHLPGKAFNEMTLV YAGDARNNMGNSMLEAAALTGLDLRLLAPKACWPEESLVAECSALAEKHGGKITLTED VAAGVKGADFIYTDVWVSMGEAKEKWAERIALLRGYQVNAQMMALTDNPNVKFLHCLP AFHDDQTTLGKQMAKEFDLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMMATLGE " gene 290429..290633 /gene="ykgS" /locus_tag="b4688" /gene_synonym="ECK4504" /pseudo /db_xref="EcoGene:EG14492" /db_xref="GeneID:7751632" CDS 290429..290633 /gene="ykgS" /locus_tag="b4688" /gene_synonym="ECK4504" /note="pseudogene" /pseudo /codon_start=1 /transl_table=11 /db_xref="EcoGene:EG14492" /db_xref="GeneID:7751632" mobile_element complement(290634..291401) /mobile_element_type="insertion sequence:IS1C" gene complement(290649..291152) /gene="insB1" /locus_tag="b0274" /gene_synonym="ECK0022" /db_xref="EcoGene:EG40002" /db_xref="GeneID:944950" CDS complement(290649..291152) /gene="insB1" /locus_tag="b0274" /gene_synonym="ECK0022" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS1 transposase B" /protein_id="NP_414808.1" /db_xref="GI:16128259" /db_xref="ASAP:ABE-0000948" /db_xref="UniProtKB/Swiss-Prot:P0CF27" /db_xref="EcoGene:EG40002" /db_xref="GeneID:944950" /translation="MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMD EQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVEQHDKVIGHY LNIKHYQ" gene complement(291071..291346) /gene="insA" /locus_tag="b0275" /gene_synonym="ECK4523" /note="insA3" /db_xref="EcoGene:EG40001" /db_xref="GeneID:944951" CDS complement(291071..291346) /gene="insA" /locus_tag="b0275" /gene_synonym="ECK4523" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS1 repressor TnpA" /protein_id="NP_414809.1" /db_xref="GI:16128260" /db_xref="ASAP:ABE-0000951" /db_xref="UniProtKB/Swiss-Prot:P0CF09" /db_xref="EcoGene:EG40001" /db_xref="GeneID:944951" /translation="MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSR" gene 291404..292231 /gene="yagJ" /locus_tag="b0276" /gene_synonym="ECK0275; JW0270" /pseudo /db_xref="EcoGene:EG13549" /db_xref="GeneID:949094" CDS 291404..292231 /gene="yagJ" /locus_tag="b0276" /gene_synonym="ECK0275; JW0270" /note="CP4-6 prophage; uncharacterized protein;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0000963" /db_xref="UniProtKB/Swiss-Prot:P77169" /db_xref="EcoGene:EG13549" /db_xref="GeneID:949094" gene complement(292322..292948) /gene="yagK" /locus_tag="b0277" /gene_synonym="ECK0276; JW0271" /db_xref="EcoGene:EG13550" /db_xref="GeneID:945847" CDS complement(292322..292948) /gene="yagK" /locus_tag="b0277" /gene_synonym="ECK0276; JW0271" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; conserved protein" /protein_id="NP_414811.1" /db_xref="GI:16128262" /db_xref="ASAP:ABE-0000965" /db_xref="UniProtKB/Swiss-Prot:P77657" /db_xref="EcoGene:EG13550" /db_xref="GeneID:945847" /translation="MKTYQGTHGVHILEYQSKINKLLCYLTNRYPRLIAVRVDLHYPK IVDNGDNICCFPNLEPGVISRMRESLRAKLEADRTRKVREDKRIYRCPLFIIWAKEYS ESGKCHYHICLLFNKDAYYHLGDYDQDDNLRGMITGAWYSALRLERDDHPGLVHFPEN CKYVLDTNSTDFQQNYQALLTRLDYLTKVESKVFGEGDRNFGCSQIEL" gene complement(293220..293918) /gene="yagL" /locus_tag="b0278" /gene_synonym="ECK0277; JW0272" /db_xref="EcoGene:EG13551" /db_xref="GeneID:945845" CDS complement(293220..293918) /gene="yagL" /locus_tag="b0278" /gene_synonym="ECK0277; JW0272" /function="Phage or Prophage Related" /note="DNA-binding protein" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; DNA-binding protein" /protein_id="NP_414812.1" /db_xref="GI:16128263" /db_xref="ASAP:ABE-0000970" /db_xref="UniProtKB/Swiss-Prot:P77607" /db_xref="EcoGene:EG13551" /db_xref="GeneID:945845" /translation="MRGKILLYQLKYRWQSLSIFGCFLCKMTLFRYQKIIYDTGVHQM RSFFYTICSSEQQESITDHHSLAEICQKFNILPEHVVIEQVDIKEVVSEQRLLRQLIH HEMNRQDTLVIPDLSCLGRTVEDLQNILFFCLQKEMFIYSYHPASRIEPSAESCLSFL IARQDTIDIHNLKSTKSRYRHVKKKLGRKEGSKYRRDITILKKGGFTQAEIAKKLSIS LSTVKRHWNNGIIG" gene complement(293945..294799) /gene="yagM" /locus_tag="b0279" /gene_synonym="ECK0278; JW0273" /db_xref="EcoGene:EG13552" /db_xref="GeneID:944959" CDS complement(293945..294799) /gene="yagM" /locus_tag="b0279" /gene_synonym="ECK0278; JW0273" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; uncharacterized protein" /protein_id="NP_414813.1" /db_xref="GI:16128264" /db_xref="ASAP:ABE-0000972" /db_xref="UniProtKB/Swiss-Prot:P71296" /db_xref="EcoGene:EG13552" /db_xref="GeneID:944959" /translation="MSNSVTNFEMSSVLPGKKPCQGKNNESQVVQTTPIKKHSVTFKN QSSLGVIDHYARLTNKSHSSVIAEVVDLAIPILEKCNRHNWSINEIKNDLLKFSIKES INRSRGKTEVTLEEYCSLIWKTNIMSPLKIPIADYFQLNANDEFMGKDEKTVIRERLS SLRENYDMEKAIYIYNQRHFDVKHQSVSGYSNIILIHRTTFEGYYFDAGQALLLSTSQ LIIFGINEVLRRKGIVMPYPVVCWIDIYHVNEMVVMLPVLRKTDVSNRVNVPDDIIIN PYSQESRT" gene complement(295139..295579) /gene="yagN" /locus_tag="b0280" /gene_synonym="ECK0279; JW0274" /db_xref="EcoGene:EG13553" /db_xref="GeneID:945349" CDS complement(295139..295579) /gene="yagN" /locus_tag="b0280" /gene_synonym="ECK0279; JW0274" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; uncharacterized protein" /protein_id="NP_414814.1" /db_xref="GI:16128265" /db_xref="ASAP:ABE-0000976" /db_xref="UniProtKB/Swiss-Prot:P71297" /db_xref="EcoGene:EG13553" /db_xref="GeneID:945349" /translation="MATPATVSIEPTLAAIRARWCINSSKTTQSFNDPASMEEVVEYL KGTYSALRKSVACAKLKILHLKQRMQNATNFLARLMSCKNQASRSHHSTAKSAKSALS SDSGDGSDPDPEPETFPSAFITTPTNSIMLKAFFANISITEVAK" gene complement(295696..297096) /gene="intF" /locus_tag="b0281" /gene_synonym="ECK0280; JW0275; yagO" /db_xref="EcoGene:EG13554" /db_xref="GeneID:947351" CDS complement(295696..297096) /gene="intF" /locus_tag="b0281" /gene_synonym="ECK0280; JW0275; yagO" /function="Phage or Prophage Related" /note="putative phage integrase" /codon_start=1 /transl_table=11 /product="CP4-6 prophage; putative phage integrase" /protein_id="NP_414815.1" /db_xref="GI:16128266" /db_xref="ASAP:ABE-0000979" /db_xref="UniProtKB/Swiss-Prot:P71298" /db_xref="EcoGene:EG13554" /db_xref="GeneID:947351" /translation="MFIPSIYLHQQLHYCKTAILNWSRKMALSRQKFTFERLRRFTLP EGKKQTFLWDADVTTLACRATSGAKAFVFQSVYAGKTLRMTIGNINDWKIDDARAEAR RLQTLIDTGIDPRIAKAVKIAEAESLQAESRKTKVTFSVAWEDYLQELRTGISAKTKR PYSTRYIADHINLSSRGGESKKRGQGPTSAGPLASLLNLPLSELTPDYIAAWLSTERQ NRPTVTAHAYRLLRAFIKWSNYQKKYQGIIPGDLAQDYNVRKMVPVSASKADDCLQKE QLKSWFSAVRSLNNPIASAYLQVLLLTGARREEIASLRWSDVDFKWSSMRIKDKIEGE RIIPLTPYVSELLNVLAQSPNSDVNKEGWVFRSNSKSGKIIEPRSAHNRALVLAELPH ISLHGLRRSFGTLAEWVEVPTGIVAQIMGHKPSALAEKHYRRRPLDLLRKWHEKIETW ILNEAGITIKNNVDMR" gene 297206..297254 /gene="ptwF" /locus_tag="b4629" /gene_synonym="ECK4462" /pseudo /db_xref="EcoGene:EG31171" /db_xref="GeneID:5625555" tRNA 297206..297254 /gene="ptwF" /locus_tag="b4629" /gene_synonym="ECK4462" /product="tRNA-OTHER" /pseudo /db_xref="EcoGene:EG31171" /db_xref="GeneID:5625555" gene complement(297381..297719) /gene="yagP" /locus_tag="b4694" /gene_synonym="ECK0281; JW0276" /pseudo /db_xref="EcoGene:EG13555" /db_xref="GeneID:7751633" CDS complement(297381..297719) /gene="yagP" /locus_tag="b4694" /gene_synonym="ECK0281; JW0276" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent" /note="pseudogene, LysR family, fragment;putative regulator; Not classified; putative transcriptional regulator LYSR-type" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0000982" /db_xref="UniProtKB/Swiss-Prot:P75684" /db_xref="EcoGene:EG13555" /db_xref="GeneID:7751633" gene complement(297714..297791) /gene="ykgT" /locus_tag="b4695" /gene_synonym="ECK4508; yagP" /pseudo /db_xref="EcoGene:EG14496" /db_xref="GeneID:7751634" CDS complement(297714..297791) /gene="ykgT" /locus_tag="b4695" /gene_synonym="ECK4508; yagP" /note="pseudogene, MobA-related" /pseudo /codon_start=1 /transl_table=11 /db_xref="EcoGene:EG14496" /db_xref="GeneID:7751634" gene complement(297770..298726) /gene="paoD" /locus_tag="b0283" /gene_synonym="ECK0282; JW0277; yagQ" /db_xref="EcoGene:EG13556" /db_xref="GeneID:945010" CDS complement(297770..298726) /gene="paoD" /locus_tag="b0283" /gene_synonym="ECK0282; JW0277; yagQ" /codon_start=1 /transl_table=11 /product="moco insertion factor for PaoABC aldehyde oxidoreductase" /protein_id="NP_414817.1" /db_xref="GI:16128268" /db_xref="ASAP:ABE-0000984" /db_xref="UniProtKB/Swiss-Prot:P77183" /db_xref="EcoGene:EG13556" /db_xref="GeneID:945010" /translation="MSYPLFDKDEHWHKPEQAFLTDDHRTILRFAVEALMSGKGAVLV TLVEIRGGAARPLGAQMVVREDGRYCGFVSGGCVEAAAAFEALEMMGSGRDREIRYGE GSPWFDIVLPCGGGITLTLHKLRSAQPLLAVLNRLEQRKPVGLRYDPQAQSLVCLPTQ TRTGWNLNGFEVGFRPCVRLMIYGRSLEAQATASLAAATGYDSHIFDLFPASASAQID TDTAVILLCHDLNRELPVLQAAREAKPFYLGALGSYRTHTLRLQKLHELGWSREETTQ IRAPVGIFPKARDAHTLALSVLAEVASVRLHQEEDSCLPPSS" gene complement(298736..300934) /gene="paoC" /locus_tag="b0284" /gene_synonym="ECK0283; hsm; JW0278; yagR" /db_xref="EcoGene:EG13557" /db_xref="GeneID:944961" CDS complement(298736..300934) /gene="paoC" /locus_tag="b0284" /gene_synonym="ECK0283; hsm; JW0278; yagR" /function="enzyme; Not classified" /codon_start=1 /transl_table=11 /product="PaoABC aldehyde oxidoreductase, Moco-containing subunit" /protein_id="NP_414818.1" /db_xref="GI:16128269" /db_xref="ASAP:ABE-0000988" /db_xref="UniProtKB/Swiss-Prot:P77489" /db_xref="EcoGene:EG13557" /db_xref="GeneID:944961" /translation="MKFDKPAGENPIDQLKVVGRPHDRIDGPLKTTGTARYAYEWHEE APNAAYGYIVGSAIAKGRLTALDTDAAQKAPGVLAVITASNAGALGKGDKNTARLLGG PTIEHYHQAIALVVAETFEQARAAASLVQAHYRRNKGAYSLADEKQAVNQPPEDTPDK NVGDFDGAFTSAAVKIDATYTTPDQSHMAMEPHASMAVWDGNKLTLWTSNQMIDWCRT DLAKTLKVPVENVRIISPYIGGGFGGKLFLRSDALLAALAARAVKRPVKVMLPRPSIP NNTTHRPATLQHLRIGADQSGKITAISHESWSGNLPGGTPETAVQQSELLYAGANRHT GLRLATLDLPEGNAMRAPGEAPGLMALEIAIDELAEKAGIDPVEFRILNDTQVDPADP TRCFSRRQLIECLRTGADKFGWKQRNATPGQVRDGEWLVGHGVAAGFRNNLLEKSGAR VHLEQNGTVTVETDMTDIGTGSYTILAQTAAEMLGVPLEQVAVHLGDSSFPVSAGSGG QWGANTSTSGVYAACMKLREMIASAVGFDPEQSQFADGKITNGTRSATLHEATAGGRL TAEESIEFGTLSKEYQQSTFAGHFVEVGVHSATGEVRVRRMLAVCAAGRILNPKTARS QVIGAMTMGMGAALMEELAVDDRLGYFVNHDMAGYEVPVHADIPKQEVIFLDDTDPIS SPMKAKGVGELGLCGVSAAIANAVYNATGIRVRDYPITLDKLLDKLPDVV" gene complement(300931..301887) /gene="paoB" /locus_tag="b0285" /gene_synonym="ECK0284; JW0279; yagS" /db_xref="EcoGene:EG13558" /db_xref="GeneID:945710" CDS complement(300931..301887) /gene="paoB" /locus_tag="b0285" /gene_synonym="ECK0284; JW0279; yagS" /function="enzyme; Not classified" /codon_start=1 /transl_table=11 /product="PaoABC aldehyde oxidoreductase, FAD-containing subunit" /protein_id="NP_414819.1" /db_xref="GI:16128270" /db_xref="ASAP:ABE-0000990" /db_xref="UniProtKB/Swiss-Prot:P77324" /db_xref="EcoGene:EG13558" /db_xref="GeneID:945710" /translation="MKAFTYERVNTPAEAALSAQRVPGAKFIAGGTNLLDLMKLEIET PTHLIDVNGLGLDKIEVTDAGGLRIGALVRNTDLAAHERVRRDYAVLSRALLAGASGQ LRNQATTAGNLLQRTRCPYFYDTNQPCNKRLPGSGCAALEGFSRQHAVVGVSEACIAT HPSDMAVAMRLLDAVVETITPEGKTRSITLADFYHPPGKTPHIETALLPGELIVAVTL PPPLGGKHIYRKVRDRASYAFALVSVAAIIQPDGSGRVALGGVAHKPWRIEAADAQLS QGAQAVYDTLFASAHPTAENTFKLLLAKRTLASVLAEARAQA" gene complement(301884..302573) /gene="paoA" /locus_tag="b0286" /gene_synonym="ECK0285; JW0280; yagT" /db_xref="EcoGene:EG13559" /db_xref="GeneID:945330" CDS complement(301884..302573) /gene="paoA" /locus_tag="b0286" /gene_synonym="ECK0285; JW0280; yagT" /function="enzyme; Not classified" /note="putative xanthine dehydrogenase" /codon_start=1 /transl_table=11 /product="PaoABC aldehyde oxidoreductase, 2Fe-2S subunit" /protein_id="NP_414820.1" /db_xref="GI:16128271" /db_xref="ASAP:ABE-0000992" /db_xref="UniProtKB/Swiss-Prot:P77165" /db_xref="EcoGene:EG13559" /db_xref="GeneID:945330" /translation="MSNQGEYPEDNRVGKHEPHDLSLTRRDLIKVSAATAATAVVYPH STLAASVPAATPAPEIMPLTLKVNGKTEQLEVDTRTTLLDTLRENLHLIGTKKGCDHG QCGACTVLVNGRRLNACLTLAVMHQGAEITTIEGLGSPDNLHPMQAAFIKHDGFQCGY CTSGQICSSVAVLKEIQDGIPSHVTVDLVSAPETTADEIRERMSGNICRCGAYANILA AIEDAAGEIKS" gene 302991..303605 /gene="yagU" /locus_tag="b0287" /gene_synonym="ECK0286; JW0281" /db_xref="EcoGene:EG13560" /db_xref="GeneID:945677" CDS 302991..303605 /gene="yagU" /locus_tag="b0287" /gene_synonym="ECK0286; JW0281" /codon_start=1 /transl_table=11 /product="DUF1440 family inner membrane acid resistance protein" /protein_id="NP_414821.1" /db_xref="GI:16128272" /db_xref="ASAP:ABE-0000995" /db_xref="UniProtKB/Swiss-Prot:P0AAA1" /db_xref="EcoGene:EG13560" /db_xref="GeneID:945677" /translation="MNIFEQTPPNRRRYGLAAFIGLIAGVVSAFVKWGAEVPLPPRSP VDMFNAACGPESLIRAAGQIDCSRNFLNPPYIFLRDWLGLTDPNAAVYTFAGHVFNWV GVTHIIFSIVFAVGYCVVAEVFPKIKLWQGLLAGALAQLFVHMISFPLMGLTPPLFDL PWYENVSEIFGHLVWFWSIEIIRRDLRNRITHEPDPEIPLGSNR" gene complement(303853..304182) /gene="ykgJ" /locus_tag="b0288" /gene_synonym="ECK0287; JW0282" /db_xref="EcoGene:EG14323" /db_xref="GeneID:945905" CDS complement(303853..304182) /gene="ykgJ" /locus_tag="b0288" /gene_synonym="ECK0287; JW0282" /function="putative carrier; Not classified" /GO_function="GO:0009055 - electron carrier activity" /note="putative ferredoxin" /codon_start=1 /transl_table=11 /product="UPF0153 cysteine cluster protein" /protein_id="NP_414822.1" /db_xref="GI:16128273" /db_xref="ASAP:ABE-0000997" /db_xref="UniProtKB/Swiss-Prot:P0AAL9" /db_xref="EcoGene:EG14323" /db_xref="GeneID:945905" /translation="MSNLNPCMTCGACCAFFRVSFYWAEADDAGGTIPARLTEQISPF HRCMSGTNQKNPRCIALAGTPGKNACCTIYKNRSSTCREFAMSGENGVVNEACNRARA KYGLTPL" gene complement(304495..305205) /gene="ecpE" /locus_tag="b0289" /gene_synonym="ECK0288; JW5030; matF; yagV" /db_xref="EcoGene:EG13561" /db_xref="GeneID:946631" CDS complement(304495..305205) /gene="ecpE" /locus_tag="b0289" /gene_synonym="ECK0288; JW5030; matF; yagV" /function="factor; Surface structures" /codon_start=1 /transl_table=11 /product="ECP production pilus chaperone" /protein_id="NP_414823.2" /db_xref="GI:90111108" /db_xref="ASAP:ABE-0001000" /db_xref="UniProtKB/Swiss-Prot:P77263" /db_xref="EcoGene:EG13561" /db_xref="GeneID:946631" /translation="MFRRRGVTLTKALLTAVCMLAAPLTQAISVGNLTFSLPSETDFV SKRVVNNNKSARIYRIAISAIDSPGSSELRTRPVDGELLFAPRQLALQAGESEYFKFY YHGPRDNRERYYRVSFREVPTRNHTRRSPTGGVVSTEPVVVMDTILVVRPRQVQFKWS FDKVTGTVSNTGNTWFKLLIKPGCDSTEEEGDAWYLRPGDVVHQPELRQPGNHYLVYN DKFIKISDSCPAKPPSAD" gene complement(305174..306817) /gene="ecpD" /locus_tag="b0290" /gene_synonym="ECK0289; JW0284; matE; yagW" /db_xref="EcoGene:EG13562" /db_xref="GeneID:947349" CDS complement(305174..306817) /gene="ecpD" /locus_tag="b0290" /gene_synonym="ECK0289; JW0284; matE; yagW" /function="structural component; Surface structures" /note="putative receptor" /codon_start=1 /transl_table=11 /product="polymerized tip adhesin of ECP fibers" /protein_id="NP_414824.1" /db_xref="GI:16128275" /db_xref="ASAP:ABE-0001002" /db_xref="UniProtKB/Swiss-Prot:P77694" /db_xref="EcoGene:EG13562" /db_xref="GeneID:947349" /translation="MRVNLLITMIIFALIWPVTALRAAVSKTTWADAPAREFVFVENN SDDNFFVTPGGALDPRLTGANRWTGLKYTGSGTIYQQSLGYIDNGYNTGLYTNWKFDM WLENSPVSSPLTGLRCINWYAGCNMTTSLILPQTTDASGFYGATVTSGGAKWMHGMLS DAFYQYMQQMPVGSSFTMTINACQTSVNYDASSGARCKDQASGNWYVRNVTHTKAANL RLINTHSLAEVFINSDGVPTLGEGNADCRTQTIGSRSGLSCKMVNYTLQTNGLSNTSI HIFPAIANSSLASAVGAYDMQFSLNGSSWKPVSNTAYYYTFNEMKSADSIYVFFSSNF FKQMVNLGISDINTKDLFNFRFQNTTSPESGWYEFSTSNTLIIKPRDFSISIISDEYT QTPSREGYVGSGESALDFGYIVTTSGKTAADEVLIKVTGPAQVIGGRSYCVFSSDDGK AKVPFPATLSFITRNGATKTYDAGCDDSWRDMTDALWLTTPWTDISGEVGQMDKTTVK FSIPMDNAISLRTVDDNGWFGEVSASGEIHVQATWRNIN" gene complement(306807..309332) /gene="ecpC" /locus_tag="b0291" /gene_synonym="ECK0290; JW0285; matD; yagX" /db_xref="EcoGene:EG13563" /db_xref="GeneID:947606" CDS complement(306807..309332) /gene="ecpC" /locus_tag="b0291" /gene_synonym="ECK0290; JW0285; matD; yagX" /function="membrane; Outer membrane constituents" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="ECP production outer membrane protein" /protein_id="NP_414825.1" /db_xref="GI:16128276" /db_xref="ASAP:ABE-0001005" /db_xref="UniProtKB/Swiss-Prot:P77802" /db_xref="EcoGene:EG13563" /db_xref="GeneID:947606" /translation="MPLRRFSPGLKAQFAFGMVFLFVQPDASAADISAQQIGGVIIPQ AFSQALQDGMSVPLYIHLAGSQGRQDDQRIGSAFIWLDDGQLRIRKIQLEESEDNASV SEQTRQQLMALANAPFNEALTIPLTDNAQLDLSLRQLLLQLVVKREALGTVLRSRSED IGQSSVNTLSSNLSYNLGVYNNQLRNGGSNTSSYLSLNNVTALREHHVVLDGSLYGIG SGQQDSELYKAMYERDFAGHRFAGGMLDTWNLQSLGPMTAISAGKIYGLSWGNQASST IFDSSQSATPVIAFLPAAGEVHLTRDGRLLSVQNFTMGNHEVDTRGLPYGIYDVEVEV IVNGRVISKRTQRVNKLFSRGRGVGAPLAWQVWGGSFHMDRWSENGKKTRPAKESWLA GASTSGSLSTLSWAATGYGYDNQAVGETRLTLPLGGAINVNLQNMLASDSSWSSIGSI SATLPGGFSSLWVNQEKTRIGNQLRRSDADNRAIGGTLNLNSLWSKLGTFSISYNDDR RYNSHYYTADYYQNVYSGTFGSLGLRAGIQRYNNGDSNANTGKYIALDLSLPLGNWFS AGMTHQNGYTMANLSARKQFDEGTIRTVGANLSRAISGDTGDDKTLSGGAYAQFDARY ASGTLNVNSAADGYVNTNLTANGSVGWQGKNIAASGRTDGNAGVIFNTGLEDDGQISA KINGRIFPLNGKRNYLPLSPYGRYEVELQNSKNSLDSYDIVSGRKSRLTLYPGNVAVI EPEVKQMVTVSGRIRAEDGTLLANARINNHIGRTRTDENGEFVMDVDKKYPTIDFRYS GNKTCEVALELNQARGAVWVGDVVCSGLSSWAAVTQTGEENES" gene complement(309358..310026) /gene="ecpB" /locus_tag="b0292" /gene_synonym="ECK0291; JW0286; matC; yagY" /db_xref="EcoGene:EG13564" /db_xref="GeneID:948806" CDS complement(309358..310026) /gene="ecpB" /locus_tag="b0292" /gene_synonym="ECK0291; JW0286; matC; yagY" /function="factor; Surface structures" /codon_start=1 /transl_table=11 /product="ECP production pilus chaperone" /protein_id="NP_414826.1" /db_xref="GI:16128277" /db_xref="ASAP:ABE-0001007" /db_xref="UniProtKB/Swiss-Prot:P77188" /db_xref="EcoGene:EG13564" /db_xref="GeneID:948806" /translation="MKKHLLPLALLFSGISPAQALDVGDISSFMNSDSSTLSKTIKNS TDSGRLINIRLERLSSPLDDGQVISMDKPDELLLTPASLLLPAQASEVIRFFYKGPAD EKERYYRIVWFDQALSDAQRDNANRSAVATASARIGTILVVAPRQANYHFQYANGSLT NTGNATLRILAYGPCLKAANGKECKENYYLMPGKSRRFTRVDTADNKGRVALWQGDKF IPVK" gene complement(310084..310671) /gene="ecpA" /locus_tag="b0293" /gene_synonym="ECK0292; JW0287; matB; yagZ" /db_xref="EcoGene:EG13565" /db_xref="GeneID:948759" CDS complement(310084..310671) /gene="ecpA" /locus_tag="b0293" /gene_synonym="ECK0292; JW0287; matB; yagZ" /function="structural component; Surface structures" /codon_start=1 /transl_table=11 /product="ECP pilin" /protein_id="NP_414827.1" /db_xref="GI:16128278" /db_xref="ASAP:ABE-0001009" /db_xref="UniProtKB/Swiss-Prot:P0AAA3" /db_xref="EcoGene:EG13565" /db_xref="GeneID:948759" /translation="MKKKVLAIALVTVFTGMGVAQAADVTAQAVATWSATAKKDTTSK LVVTPLGSLAFQYAEGIKGFNSQKGLFDVAIEGDSTATAFKLTSRLITNTLTQLDTSG STLNVGVDYNGAAVEKTGDTVMIDTANGVLGGNLSPLANGYNASNRTTAQDGFTFSII SGTTNGTTAVTDYSTLPEGIWSGDVSVQFDATWTS" gene complement(310746..311336) /gene="ecpR" /locus_tag="b0294" /gene_synonym="ECK0293; JW5031; matA; ykgK" /db_xref="EcoGene:EG14324" /db_xref="GeneID:944966" CDS complement(310746..311336) /gene="ecpR" /locus_tag="b0294" /gene_synonym="ECK0293; JW5031; matA; ykgK" /function="putative regulator; Not classified" /note="putative regulator" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator for the ecp operon" /protein_id="NP_414828.1" /db_xref="GI:16128279" /db_xref="ASAP:ABE-0001011" /db_xref="UniProtKB/Swiss-Prot:P71301" /db_xref="EcoGene:EG14324" /db_xref="GeneID:944966" /translation="MTWQSDYSRDYEVKNHMECQNRSDKYIWSPHDAYFYKGLSELIV DIDRLIYLSLEKIRKDFVFINLSTDSLSEFINRDNEWLSAVKGKQVVLIAARKSEALA NYWYYNSNIRGVVYAGLSRDIRKELVYVINGRFLRKDIKKDKITDREMEIIRMTAQGM QPKSIARIENCSVKTVYTHRRNAEAKLYSKIYKLVQ" gene 312112..312339 /gene="ykgL" /locus_tag="b0295" /gene_synonym="ECK0294; JW5033" /db_xref="EcoGene:EG14325" /db_xref="GeneID:944962" CDS 312112..312339 /gene="ykgL" /locus_tag="b0295" /gene_synonym="ECK0294; JW5033" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_414829.1" /db_xref="GI:16128280" /db_xref="ASAP:ABE-0001019" /db_xref="UniProtKB/Swiss-Prot:P56257" /db_xref="EcoGene:EG14325" /db_xref="GeneID:944962" /translation="MQAAPQREETEWRVQSKRGLMPAYRGEAGQQVNIKIMEYSERNV RQLASNEQEEYIPRKINVGVINTPTLIRSDY" gene complement(312374..312514) /gene="ykgO" /locus_tag="b4506" /gene_synonym="ECK0295; JW5034; rpmJ2" /db_xref="EcoGene:EG14432" /db_xref="GeneID:1450238" CDS complement(312374..312514) /gene="ykgO" /locus_tag="b4506" /gene_synonym="ECK0295; JW5034; rpmJ2" /codon_start=1 /transl_table=11 /product="RpmJ-like protein" /protein_id="YP_588437.1" /db_xref="GI:94541137" /db_xref="ASAP:ABE-0285027" /db_xref="UniProtKB/Swiss-Prot:Q2EEQ2" /db_xref="EcoGene:EG14432" /db_xref="GeneID:1450238" /translation="MKVLNSLRTAKERHPDCQIVKRKGRLYVICKSNPRFKAVQGRKK KR" gene complement(312514..312777) /gene="ykgM" /locus_tag="b0296" /gene_synonym="ECK0296; JW5035; rpmE2" /db_xref="EcoGene:EG14326" /db_xref="GeneID:944960" CDS complement(312514..312777) /gene="ykgM" /locus_tag="b0296" /gene_synonym="ECK0296; JW5035; rpmE2" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L31 type B; alternative zinc-limitation L31 protein" /protein_id="NP_414830.1" /db_xref="GI:16128281" /db_xref="ASAP:ABE-0001021" /db_xref="UniProtKB/Swiss-Prot:P0A7N1" /db_xref="EcoGene:EG14326" /db_xref="GeneID:944960" /translation="MKPNIHPEYRTVVFHDTSVDEYFKIGSTIKTDREIELDGVTYPY VTIDVSSKSHPFYTGKLRTVASEGNVARFTQRFGRFVSTKKGA" gene complement(313141..313242) /gene="ykgR" /locus_tag="b4671" /gene_synonym="ECK4486" /db_xref="EcoGene:EG14476" /db_xref="GeneID:7751635" CDS complement(313141..313242) /gene="ykgR" /locus_tag="b4671" /gene_synonym="ECK4486" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_002791238.1" /db_xref="GI:226524699" /db_xref="UniProtKB/Swiss-Prot:C1P5Z8" /db_xref="EcoGene:EG14476" /db_xref="GeneID:7751635" /translation="MKENKVQQISHKLINIVVFVAIVEYAYLFLHFY" gene complement(313716..313805) /gene="ykgP" /locus_tag="b4630" /gene_synonym="ECK4446" /pseudo /db_xref="EcoGene:EG14433" /db_xref="GeneID:5625556" CDS complement(313716..313805) /gene="ykgP" /locus_tag="b4630" /gene_synonym="ECK4446" /note="pseudogene, oxidoreductase family" /pseudo /codon_start=1 /transl_table=11 /db_xref="EcoGene:EG14433" /db_xref="GeneID:5625556" gene 314357..315228 /gene="eaeH" /locus_tag="b0297" /gene_synonym="ECK0297; JW0291" /pseudo /db_xref="EcoGene:EG12161" /db_xref="GeneID:944957" CDS 314357..315228 /gene="eaeH" /locus_tag="b0297" /gene_synonym="ECK0297; JW0291" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="pseudogene, attaching and effacing protein homology;factor; Not classified" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0001025" /db_xref="UniProtKB/Swiss-Prot:P36943" /db_xref="EcoGene:EG12161" /db_xref="GeneID:944957" mobile_element 315229..316483 /mobile_element_type="insertion sequence:IS3A" gene 315291..315590 /gene="insE1" /locus_tag="b0298" /gene_synonym="ECK0298" /db_xref="EcoGene:EG40005" /db_xref="GeneID:944952" CDS 315291..315590 /gene="insE1" /locus_tag="b0298" /gene_synonym="ECK0298" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS3 transposase A" /protein_id="NP_414832.2" /db_xref="GI:226524700" /db_xref="ASAP:ABE-0001028" /db_xref="UniProtKB/Swiss-Prot:P0CF66" /db_xref="EcoGene:EG40005" /db_xref="GeneID:944952" /translation="MTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYES QLYNWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATYFAKRLK" gene 315587..316453 /gene="insF1" /locus_tag="b0299" /gene_synonym="ECK0299" /db_xref="EcoGene:EG40006" /db_xref="GeneID:944948" CDS 315587..316453 /gene="insF1" /locus_tag="b0299" /gene_synonym="ECK0299" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS3 transposase B" /protein_id="NP_414833.1" /db_xref="GI:16128284" /db_xref="ASAP:ABE-0001030" /db_xref="UniProtKB/Swiss-Prot:P0CF79" /db_xref="EcoGene:EG40006" /db_xref="GeneID:944948" /translation="MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQ FRQHCDSVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKF SPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVI GWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSM SAKGCCYDNACVESFFHSLKVECIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGG LSPEQFENKNLA" gene complement(316486..317169) /gene="ykgA" /locus_tag="b0300" /gene_synonym="ECK0300; JW5037" /pseudo /db_xref="EcoGene:EG13381" /db_xref="GeneID:944956" CDS complement(316486..317169) /gene="ykgA" /locus_tag="b0300" /gene_synonym="ECK0300; JW5037" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="pseudogene, AraC family;putative regulator; Not classified; putative ARAC-type regulatory protein" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0001032" /db_xref="UniProtKB/Swiss-Prot:P77601" /db_xref="EcoGene:EG13381" /db_xref="GeneID:944956" gene 317439..317567 /gene="ykgQ" /locus_tag="b4631" /gene_synonym="ECK4454" /pseudo /db_xref="EcoGene:EG14443" /db_xref="GeneID:5625557" CDS 317439..317567 /gene="ykgQ" /locus_tag="b4631" /gene_synonym="ECK4454" /note="pseudogene, putative dehydrogenase" /pseudo /codon_start=1 /transl_table=11 /db_xref="EcoGene:EG14443" /db_xref="GeneID:5625557" gene complement(317726..318319) /gene="rclC" /locus_tag="b0301" /gene_synonym="ECK0301; JW5038" /db_xref="EcoGene:EG13579" /db_xref="GeneID:944974" CDS complement(317726..318319) /gene="rclC" /locus_tag="b0301" /gene_synonym="ECK0301; JW5038" /codon_start=1 /transl_table=11 /product="reactive chlorine species (RCS) stress resistance inner membrane protein" /protein_id="NP_414835.2" /db_xref="GI:90111110" /db_xref="ASAP:ABE-0001038" /db_xref="UniProtKB/Swiss-Prot:P75685" /db_xref="EcoGene:EG13579" /db_xref="GeneID:944974" /translation="MEKYLHLLSRGDKIGLTLIRLSIAIVFMWIGLLKFVPYEADSIT PFVANSPLMSFFYEHPEDYKQYLTHEGEYKPEARAWQTANNTYGFSNGLGVVEVIIAL LVLANPVNRWLGLLGGLMAFTTPLVTLSFLITTPEAWVPALGDAHHGFPYLSGAGRLV LKDTLMLAGAVMIMADSAREILKQRSNESSSTLKTEY" gene complement(318331..318567) /gene="rclB" /locus_tag="b0303" /gene_synonym="ECK0302; JW5039; ykgB; ykgI" /db_xref="EcoGene:EG14278" /db_xref="GeneID:945658" CDS complement(318331..318567) /gene="rclB" /locus_tag="b0303" /gene_synonym="ECK0302; JW5039; ykgB; ykgI" /note="the overlapping ORF b0302 on the opposite strand is no longer thought to be an actual gene, and has been deaccessioned" /codon_start=1 /transl_table=11 /product="reactive chlorine species (RCS) stress resistance periplasmic protein" /protein_id="NP_414837.2" /db_xref="GI:90111111" /db_xref="ASAP:ABE-0001043" /db_xref="UniProtKB/Swiss-Prot:P75687" /db_xref="EcoGene:EG14278" /db_xref="GeneID:945658" /translation="MFKKSVLFATLLSGVMAFSTNADDKIILKHISVSSVSASPTVLE DTIADIARKYNASSWKVTSMRIDNNSTATAVLYK" gene complement(318676..320001) /gene="rclA" /locus_tag="b0304" /gene_synonym="ECK0303; JW5040; ykgC" /db_xref="EcoGene:EG13580" /db_xref="GeneID:946092" CDS complement(318676..320001) /gene="rclA" /locus_tag="b0304" /gene_synonym="ECK0303; JW5040; ykgC" /function="putative enzyme; Not classified" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="reactive chlorine stress species (RCS) resistance protein; pyridine nucleotide-dependent disulfide oxidoreductase family" /protein_id="NP_414838.2" /db_xref="GI:90111112" /db_xref="ASAP:ABE-0001048" /db_xref="UniProtKB/Swiss-Prot:P77212" /db_xref="EcoGene:EG13580" /db_xref="GeneID:946092" /translation="MNKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI NIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDGQAEFI NNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGH LGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIIL NAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVV DKRLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFM TPPLSRVGMTEEQARESGADIQVVTLPVAAIPRARVMNDTRGVLKAIVDNKTQRMLGA SLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFSLVK" gene 320227..321081 /gene="rclR" /locus_tag="b0305" /gene_synonym="ECK0304; JW0298; ykgD" /db_xref="EcoGene:EG13581" /db_xref="GeneID:945616" CDS 320227..321081 /gene="rclR" /locus_tag="b0305" /gene_synonym="ECK0304; JW0298; ykgD" /function="regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="putative ARAC-type regulatory protein" /codon_start=1 /transl_table=11 /product="reactive chlorine species (RCS)-specific activator of the rcl genes" /protein_id="NP_414839.1" /db_xref="GI:16128290" /db_xref="ASAP:ABE-0001054" /db_xref="UniProtKB/Swiss-Prot:P77379" /db_xref="EcoGene:EG13581" /db_xref="GeneID:945616" /translation="MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHAL TQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFL TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREW IAQVNTEKNILSLLLHPRLGAVIQQMLEMPGHAWTVESLASIAHMSRASFAQLFRDVS GTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR ERVRQLAP" gene 321608..322327 /gene="ykgE" /locus_tag="b0306" /gene_synonym="ECK0305; JW5041" /db_xref="EcoGene:EG13582" /db_xref="GeneID:948438" CDS 321608..322327 /gene="ykgE" /locus_tag="b0306" /gene_synonym="ECK0305; JW5041" /function="putative carrier; Energy metabolism, carbon: Electron transport" /note="putative dehydrogenase subunit" /codon_start=1 /transl_table=11 /product="cysteine-rich LutA family protein; putative electron transport chain YkgEFG component" /protein_id="NP_414840.1" /db_xref="GI:16128291" /db_xref="ASAP:ABE-0001058" /db_xref="UniProtKB/Swiss-Prot:P77252" /db_xref="EcoGene:EG13582" /db_xref="GeneID:948438" /translation="MNVNFFVTCIGDALKSRMARDSVLLLEKLGCRVNFPEKQGCCGQ PAINSGYIKEAIPGMKNLIAALEDNDDPIISPAGSCTYAVKSYPTYLADEPEWASRAA KVAARMQDLTSFIVNKLGVVDVGASLQGRAVYHPSCSLARKLGVKDEPLTLLKNVRGL ELLTFAEQDTCCGFGGTFSVKMAEISGEMVKEKVAHLMEVRPEYLIGADVSCLLNISG RLQREGQKVKVMHIAEVLMSR" gene 322338..323765 /gene="ykgF" /locus_tag="b0307" /gene_synonym="ECK0306; JW0300" /db_xref="EcoGene:EG13583" /db_xref="GeneID:944980" CDS 322338..323765 /gene="ykgF" /locus_tag="b0307" /gene_synonym="ECK0306; JW0300" /function="putative carrier; Energy metabolism, carbon: Electron transport" /codon_start=1 /transl_table=11 /product="ferridoxin-like LutB family protein; putative electron transport chain YkgEFG component" /protein_id="NP_414841.1" /db_xref="GI:16128292" /db_xref="ASAP:ABE-0001060" /db_xref="UniProtKB/Swiss-Prot:P77536" /db_xref="EcoGene:EG13583" /db_xref="GeneID:944980" /translation="MSIKTSNTDFKTRIRQQIEDPIMRKAVANAQQRIGANRQKMVDE LGHWEEWRDRAAQIRDHVLSNLDAYLYQLSEKVTQNGGHVYFARTKEDATRYILQVAQ RKNARKVVKSKSMVTEEIGVNHVLQDAGIQVIETDLGEYILQLDQDPPSHVVVPAIHK DRHQIRRVLHERLGYEGPETPEAMTLFIRQKIREDFLSAEIGITGCNFAVAETGSVCL VTNEGNARMCTTLPKTHIAVMGMERIAPTFAEVDVLITMLARSAVGARLTGYNTWLTG PREAGHVDGPEEFHLVIVDNGRSEVLASEFRDVLRCIRCGACMNTCPAYRHIGGHGYG SIYPGPIGAVISPLLGGYKDFKDLPYACSLCTACDNVCPVRIPLSKLILRHRRVMAEK GITAKAEQRAIKMFAYANSHPGLWKVGMMAGAHAASWFINGGKTPLKFGAISDWMEAR DLPEADGESFRSWFKKHQAQEKKNG" gene 323758..324453 /gene="ykgG" /locus_tag="b0308" /gene_synonym="ECK0307; JW5042" /db_xref="EcoGene:EG13584" /db_xref="GeneID:945906" CDS 323758..324453 /gene="ykgG" /locus_tag="b0308" /gene_synonym="ECK0307; JW5042" /function="putative carrier; Energy metabolism, carbon: Electron transport" /note="putative transporter" /codon_start=1 /transl_table=11 /product="LutC family protein; putative electron transport chain YkgEFG component" /protein_id="NP_414842.4" /db_xref="GI:90111113" /db_xref="ASAP:ABE-0001062" /db_xref="UniProtKB/Swiss-Prot:P77433" /db_xref="EcoGene:EG13584" /db_xref="GeneID:945906" /translation="MDNRGEFLNNVAQALGRPLRLEPQAEDAPLNNYANERLTQLNQQ QRCDAFIQFASDVMLTRCELTSEAKAAEAAIRLCKELGDQSVVISGDTRLEELGISER LQQECNAVVWDPAKGAENISQAEQAKVGVVYAEYGLTESGGVVLFSAAERGRSLSLLP EYSLFILRKSTILPRVAQLAEKLHQKAQAGERMPSCINIISGPSSTADIELIKVVGVH GPVKAVYLIIEDC" gene complement(324696..325364) /gene="ykgH" /locus_tag="b0310" /gene_synonym="ECK0308; JW0302" /db_xref="EcoGene:EG13585" /db_xref="GeneID:947513" CDS complement(324696..325364) /gene="ykgH" /locus_tag="b0310" /gene_synonym="ECK0308; JW0302" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_414844.1" /db_xref="GI:16128295" /db_xref="ASAP:ABE-0001066" /db_xref="UniProtKB/Swiss-Prot:P77180" /db_xref="EcoGene:EG13585" /db_xref="GeneID:947513" /translation="MREQIKQDIDLIEILFYLKKKIRVILFIMAICMAMVLLFLYINK DNIKVIYSLKINQTTPGILVSCDSNNNFACQTTMTEDVIQRITTFFHTSPDVKNREIR LEWSGDKRALPTAEEEISRVQASIIKWYASEYHNGRQVLDEIQTPSAINSELYTKMIY LTRNWSLYPNGDGCVTISSPEIKNKYPAAICLALGFFLSIVISVMFCLVKKMVDEYQQ NSGQ" gene complement(325577..327247) /gene="betA" /locus_tag="b0311" /gene_synonym="ECK0309; JW0303" /db_xref="EcoGene:EG10109" /db_xref="GeneID:945716" CDS complement(325577..327247) /gene="betA" /locus_tag="b0311" /gene_synonym="ECK0309; JW0303" /EC_number="1.1.99.1" /function="enzyme; Osmotic adaptation" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006578 - betaine biosynthetic process; GO:0006970 - response to osmotic stress" /codon_start=1 /transl_table=11 /product="choline dehydrogenase, a flavoprotein" /protein_id="NP_414845.1" /db_xref="GI:16128296" /db_xref="ASAP:ABE-0001070" /db_xref="UniProtKB/Swiss-Prot:P17444" /db_xref="EcoGene:EG10109" /db_xref="GeneID:945716" /translation="MQFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGGPDYRFDFR TQMPAALAFPLQGKRYNWAYETEPEPFMNNRRMECGRGKGLGGSSLINGMCYIRGNAL DLDNWAQEPGLENWSYLDCLPYYRKAETRDMGENDYHGGDGPVSVTTSKPGVNPLFEA MIEAGVQAGYPRTDDLNGYQQEGFGPMDRTVTPQGRRASTARGYLDQAKSRPNLTIRT HAMTDHIIFDGKRAVGVEWLEGDSTIPTRATANKEVLLCAGAIASPQILQRSGVGNAE LLAEFDIPLVHELPGVGENLQDHLEMYLQYECKEPVSLYPALQWWNQPKIGAEWLFGG TGVGASNHFEAGGFIRSREEFAWPNIQYHFLPVAINYNGSNAVKEHGFQCHVGSMRSP SRGHVRIKSRDPHQHPAILFNYMSHEQDWQEFRDAIRITREIMHQPALDQYRGREISP GVECQTDEQLDEFVRNHAETAFHPCGTCKMGYDEMSVVDGEGRVHGLEGLRVVDASIM PQIITGNLNATTIMIGEKIADMIRGQEALPRSTAGYFVANGMPVRAKK" gene complement(327261..328733) /gene="betB" /locus_tag="b0312" /gene_synonym="ECK0310; JW0304" /db_xref="EcoGene:EG10110" /db_xref="GeneID:947376" CDS complement(327261..328733) /gene="betB" /locus_tag="b0312" /gene_synonym="ECK0310; JW0304" /EC_number="1.2.1.8" /function="enzyme; Osmotic adaptation" /GO_process="GO:0006578 - betaine biosynthetic process; GO:0006970 - response to osmotic stress" /note="NAD+-dependent betaine aldehyde dehydrogenase" /codon_start=1 /transl_table=11 /product="betaine aldehyde dehydrogenase, NAD-dependent" /protein_id="NP_414846.1" /db_xref="GI:16128297" /db_xref="ASAP:ABE-0001072" /db_xref="UniProtKB/Swiss-Prot:P17445" /db_xref="EcoGene:EG10110" /db_xref="GeneID:947376" /translation="MSRMAEQQLYIHGGYTSATSGRTFETINPANGNVLATVQAAGRE DVDRAVKSAQQGQKIWASMTAMERSRILRRAVDILRERNDELAKLETLDTGKAYSETS TVDIVTGADVLEYYAGLIPALEGSQIPLRETSFVYTRREPLGVVAGIGAWNYPIQIAL WKSAPALAAGNAMIFKPSEVTPLTALKLAEIYSEAGLPDGVFNVLPGVGAETGQYLTE HPGIAKVSFTGGVASGKKVMANSAASSLKEVTMELGGKSPLIVFDDADLDLAADIAMM ANFFSSGQVCTNGTRVFVPAKCKAAFEQKILARVERIRAGDVFDPQTNFGPLVSFPHR DNVLRYIAKGKEEGARVLCGGDVLKGDGFDNGAWVAPTVFTDCSDDMTIVREEIFGPV MSILTYESEDEVIRRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAE MPVGGYKHSGIGRENGVMTLQSYTQVKSIQVEMAKFQSIF" gene complement(328747..329334) /gene="betI" /locus_tag="b0313" /gene_synonym="ECK0311; JW0305" /db_xref="EcoGene:EG10111" /db_xref="GeneID:944981" CDS complement(328747..329334) /gene="betI" /locus_tag="b0313" /gene_synonym="ECK0311; JW0305" /function="putative regulator; Osmotic adaptation" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006970 - response to osmotic stress; GO:0006350 - transcription" /note="probably transcriptional repressor of bet genes" /codon_start=1 /transl_table=11 /product="choline-inducible betIBA-betT divergent operon transcriptional repressor" /protein_id="NP_414847.3" /db_xref="GI:49176011" /db_xref="ASAP:ABE-0001076" /db_xref="UniProtKB/Swiss-Prot:P17446" /db_xref="EcoGene:EG10111" /db_xref="GeneID:944981" /translation="MPKLGMQSIRRRQLIDATLEAINEVGMHDATIAQIARRAGVSTG IISHYFRDKNGLLEATMRDITSQLRDAVLNRLHALPQGSAEQRLQAIVGGNFDETQVS SAAMKAWLAFWASSMHQPMLYRLQQVSSRRLLSNLVSEFRRELPREQAQEAGYGLAAL IDGLWLRAALSGKPLDKTRANSLTRHFITQHLPTD" gene 329463..331496 /gene="betT" /locus_tag="b0314" /gene_synonym="ECK0312; JW0306" /db_xref="EcoGene:EG10112" /db_xref="GeneID:945079" CDS 329463..331496 /gene="betT" /locus_tag="b0314" /gene_synonym="ECK0312; JW0306" /function="transport; Transport of small molecules: Other" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006578 - betaine biosynthetic process" /note="high-affinity choline transport" /codon_start=1 /transl_table=11 /product="choline transporter of high affinity" /protein_id="NP_414848.1" /db_xref="GI:16128299" /db_xref="ASAP:ABE-0001080" /db_xref="UniProtKB/Swiss-Prot:P0ABC9" /db_xref="EcoGene:EG10112" /db_xref="GeneID:945079" /translation="MTDLSHSREKDKINPVVFYTSAGLILLFSLTTILFRDFSALWIG RTLDWVSKTFGWYYLLAATLYIVFVVCIACSRFGSVKLGPEQSKPEFSLLSWAAMLFA AGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMA LGYFSYRYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLN YGLSVLFDIPDSMAAKAALIALSVIIATISVTSGVDKGIRVLSELNVALALGLILFVL FMGDTSFLLNALVLNVGDYVNRFMGMTLNSFAFDRPVEWMNNWTLFFWAWWVAWSPFV GLFLARISRGRTIRQFVLGTLIIPFTFTLLWLSVFGNSALYEIIHGGAAFAEEAMVHP ERGFYSLLAQYPAFTFSASVATITGLLFYVTSADSGALVLGNFTSQLKDINSDAPGWL RVFWSVAIGLLTLGMLMTNGISALQNTTVIMGLPFSFVIFFVMAGLYKSLKVEDYRRE SANRDTAPRPLGLQDRLSWKKRLSRLMNYPGTRYTKQMMETVCYPAMEEVAQELRLRG AYVELKSLPPEEGQQLGHLDLLVHMGEEQNFVYQIWPQQYSVPGFTYRARSGKSTYYR LETFLLEGSQGNDLMDYSKEQVITDILDQYERHLNFIHLHREAPGHSVMFPDA" gene 332371..333459 /gene="yahA" /locus_tag="b0315" /gene_synonym="ECK0313; JW0307" /db_xref="EcoGene:EG11236" /db_xref="GeneID:947459" CDS 332371..333459 /gene="yahA" /locus_tag="b0315" /gene_synonym="ECK0313; JW0307" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent" /codon_start=1 /transl_table=11 /product="c-di-GMP-specific phosphodiesterase" /protein_id="NP_414849.1" /db_xref="GI:16128300" /db_xref="ASAP:ABE-0001086" /db_xref="UniProtKB/Swiss-Prot:P21514" /db_xref="EcoGene:EG11236" /db_xref="GeneID:947459" /translation="MNSCDFRVFLQEFGTTVHLSLPGSVSEKERLLLKLLMQGMSVTE ISQYRNRSAKTISHQKKQLFEKLGIQSDITFWRDIFFQYNPEIISATGSNSHRYINDN HYHHIVTPEAISLALENHEFKPWIQPVFCAQTGVLTGCEVLVRWEHPQTGIIPPDQFI PLAESSGLIVIMTRQLMKQTADILMPVKHLLPDNFHIGINVSAGCFLAAGFEKECLNL VNKLGNDKIKLVLELTERNPIPVTPEARAIFDSLHQHNITFALDDFGTGYATYRYLQA FPVDFIKIDKSFVQMASVDEISGHIVDNIVELARKPGLSIVAEGVETQEQADLMIGKG VHFLQGYLYSPPVPGNKFISEWVMKAGG" gene complement(333501..334433) /gene="yahB" /locus_tag="b0316" /gene_synonym="ECK0314; JW0308" /db_xref="EcoGene:EG13586" /db_xref="GeneID:945278" CDS complement(333501..334433) /gene="yahB" /locus_tag="b0316" /gene_synonym="ECK0314; JW0308" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="putative DNA-bindng transcriptional regulator" /protein_id="NP_414850.1" /db_xref="GI:16128301" /db_xref="ASAP:ABE-0001088" /db_xref="UniProtKB/Swiss-Prot:P77700" /db_xref="EcoGene:EG13586" /db_xref="GeneID:945278" /translation="MNSIFTEENLLAFTTAARFGSFSKAAEELGLTTSAISYTIKRME TGLDVVLFTRSTRSIELTESGRYFFRKATDLLNDFYAIKRRIDTISQGIEARVRICIN QLLYTPKHTARLLQVLKKQFPTCQITVTTEVYNGVWDAIINNQANIAIGAPDTLLDGG GIDYTEIGAIRWAFAIAPDHPLAFVPEPIAESQLRLYPNIMVEDTAHTINKKVGWLLH GQESILVPDFNTKCQCQILGEGIGFLPDYMVREAMTQSLLVTRQIHNPRQDSRMLLAT QHSATGQVTQWIKKQFAPNGILTGIYQDLLHREN" gene complement(334525..335022) /gene="yahC" /locus_tag="b0317" /gene_synonym="ECK0315; JW0309" /db_xref="EcoGene:EG13587" /db_xref="GeneID:947337" CDS complement(334525..335022) /gene="yahC" /locus_tag="b0317" /gene_synonym="ECK0315; JW0309" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_414851.1" /db_xref="GI:16128302" /db_xref="ASAP:ABE-0001091" /db_xref="UniProtKB/Swiss-Prot:P77219" /db_xref="EcoGene:EG13587" /db_xref="GeneID:947337" /translation="MNGLTATGVTVGICAGLWQLVSSHVGLSQGWELLGTIGFVAFCS FYAAGGGKSGFIRSLAVNYSGMVWAFFAALTAGWLASVSGLSAFWASVITTVPFSAVV VWQGRFWLLSFIPGGFLGMTLFFASGMNWTVTLLGFLAGNCVGVISEYGGQKLSEATT KRDGY" gene 335280..335885 /gene="yahD" /locus_tag="b0318" /gene_synonym="ECK0316; JW0310" /db_xref="EcoGene:EG13588" /db_xref="GeneID:947681" CDS 335280..335885 /gene="yahD" /locus_tag="b0318" /gene_synonym="ECK0316; JW0310" /function="putative regulator; Not classified" /note="putative transcription factor" /codon_start=1 /transl_table=11 /product="ankyrin repeat protein" /protein_id="NP_414852.1" /db_xref="GI:16128303" /db_xref="ASAP:ABE-0001095" /db_xref="UniProtKB/Swiss-Prot:P77736" /db_xref="EcoGene:EG13588" /db_xref="GeneID:947681" /translation="MSIKNLPADYLLAAQQGDIDKVKTCLALGVDINTCDRQGKTAIT LASLYQQYACVQALIDAGADINKQDHTCLNPFLISCLNDDLTLLRIILPAKPDLNCVT RFGGVGLTPACEKGHLSIVKELLAHTEINVNQTNHVGWTPLLEAIVLNDGGIKQQAIV QLLLEHGASPHLTDKYGKTPLELARERGFEEIAQLLIAAGA" gene 335925..336788 /gene="yahE" /locus_tag="b0319" /gene_synonym="ECK0317; JW0311" /db_xref="EcoGene:EG13589" /db_xref="GeneID:947134" CDS 335925..336788 /gene="yahE" /locus_tag="b0319" /gene_synonym="ECK0317; JW0311" /codon_start=1 /transl_table=11 /product="DUF2877 family protein" /protein_id="NP_414853.1" /db_xref="GI:16128304" /db_xref="ASAP:ABE-0001097" /db_xref="UniProtKB/Swiss-Prot:P77297" /db_xref="EcoGene:EG13589" /db_xref="GeneID:947134" /translation="MWALTADADFLAQRGQGQVEQVFARAVNIALPARQQLLTLLCEE YDNAPNSCRLALTHFDDLFRHGDKVQFDDQGITVGQHLHIEMSRCRRWLSPTLQMTAV NFHLIAWLQWHDIIHQHLGENETLFNYRGDNPFYQALNKELHIKRRAVIQAVNDKQNI ASAVASMMGLGIGLTPSADDYLTGLALILFIPGHPAEKYKEEFYLGLQRGKNNTTLLS AITLEAALQQRCRENIHRFIHNIIYDIPGNATQAIEKIKHIGSSSGCDMLYGMADGCA LSQTYGGNYVS" gene 336778..338325 /gene="yahF" /locus_tag="b0320" /gene_synonym="ECK0318; JW0312" /db_xref="EcoGene:EG13590" /db_xref="GeneID:947298" CDS 336778..338325 /gene="yahF" /locus_tag="b0320" /gene_synonym="ECK0318; JW0312" /function="putative enzyme; Not classified" /note="putative oxidoreductase subunit" /codon_start=1 /transl_table=11 /product="putative NAD(P)-binding succinyl-CoA synthase" /protein_id="NP_414854.1" /db_xref="GI:16128305" /db_xref="ASAP:ABE-0001099" /db_xref="UniProtKB/Swiss-Prot:P77187" /db_xref="EcoGene:EG13590" /db_xref="GeneID:947298" /translation="MSVKIVIKPNTYFDSVSLMSISTRANKLDGVEQAFVAMATEMNK GVLKNLGLLTPELEQAKNGDLMIVINGKSGADNEQLLVEIEELFNTKAQSGSHEARYA TIGSAKKHIPESNLAVISVNGLFAAREARQALQNDLNVMLFSDNVSVEDELALKQLAH EKGLLMMGPDCGTAIINGAALCFGNAVRRGNIGIVGASGTGSQELSVRIHEFGGGVSQ LIGTGGRDLSEKIGGLMMLDAIGMLENDPQTEIIALISKPPAPAVARKVLERARACRK PVVVCFLDRGETPVDEQGLQFARGTKEAALKAVMLSGVKQENLDLHTLNQPLIADVRA RLQPQQKYIRGLFCGGTLCDETMFAVMEKHGDVYSNIQPDPEFRLKDINRSIKHTFLD FGDDDFTNGKPHPMIDPTNRISRLIEEARDPEVAVIVMDFVLGFGSHEDPVGSTIETI KEAKAIAAAEGRELIILAYVLGTDLDTPSLEQQSQMLLDAGVILASSSTNTGLLAREF ICKGEEA" gene 338325..339743 /gene="yahG" /locus_tag="b0321" /gene_synonym="ECK0319; JW0313" /db_xref="EcoGene:EG13591" /db_xref="GeneID:945379" CDS 338325..339743 /gene="yahG" /locus_tag="b0321" /gene_synonym="ECK0319; JW0313" /codon_start=1 /transl_table=11 /product="DUF1116 family protein" /protein_id="NP_414855.1" /db_xref="GI:16128306" /db_xref="ASAP:ABE-0001101" /db_xref="UniProtKB/Swiss-Prot:P77221" /db_xref="EcoGene:EG13591" /db_xref="GeneID:945379" /translation="MSQSLFSQPLNVINVGIAMFSDDLKKQHVEVTQLDWTPPGQGNM QVVQALDNIADSPLADKIAAANQQALERIIQSHPVLIGFDQAINVVPGMTAKTILHAG PPITWEKMCGAMKGAVTGALVFEGLAKDLDEAAELAASGEITFSPCHEHDCVGSMAGV TSASMFMHIVKNKTYGNIAYTNMSEQMAKILRMGANDQSVIDRLNWMRDVQGPILRDA MKIIGEIDLRLMLAQALHMGDECHNRNNAGTTLLIQALTPGIIQAGYSVEQQREVFEF VASSDYFSGPTWMAMCKAAMDAAHGIEYSTVVTTMARNGVEFGLRVSGLPGQWFTGPA QQVIGPMFAGYKPEDSGLDIGDSAITETYGIGGFAMATAPAIVALVGGTVEEAIDFSR QMREITLGENPNVTIPLLGFMGVPSAIDITRVGSSGILPVINTAIAHKDAGVGMIGAG IVHPPFACFEKAILGWCERYGV" repeat_region 339757..340114 /note="REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences" gene 340165..341115 /gene="yahI" /locus_tag="b0323" /gene_synonym="ECK0321; JW0315" /db_xref="EcoGene:EG13593" /db_xref="GeneID:944984" CDS 340165..341115 /gene="yahI" /locus_tag="b0323" /gene_synonym="ECK0321; JW0315" /function="putative enzyme; Not classified" /GO_process="GO:0006526 - arginine biosynthetic process; GO:0006221 - pyrimidine nucleotide biosynthetic process" /note="putative kinase" /codon_start=1 /transl_table=11 /product="carbamate kinase-like protein" /protein_id="NP_414857.1" /db_xref="GI:16128308" /db_xref="ASAP:ABE-0001107" /db_xref="UniProtKB/Swiss-Prot:P77624" /db_xref="EcoGene:EG13593" /db_xref="GeneID:944984" /translation="MKELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASD YDIVLTHGNGPQVGLDLRRAEIAHKREGLPLTPLANCVADTQGGIGYLIQQALNNRLA RHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSDSQRDELQKANPDWCFVEDAGRG YRRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDL STALLAREIHADILVITTGVEKVCIHFGKPQQQALDRVDIATMTRYMQEGHFPPGSML PKIIASLTFLEQGGKEVIITTPECLPAALRGETGTHIIKT" gene 341125..342507 /gene="yahJ" /locus_tag="b0324" /gene_synonym="ECK0322; JW0316" /db_xref="EcoGene:EG13594" /db_xref="GeneID:944976" CDS 341125..342507 /gene="yahJ" /locus_tag="b0324" /gene_synonym="ECK0322; JW0316" /function="putative enzyme; Not classified" /GO_process="GO:0009310 - amine catabolic process" /note="putative deaminase" /codon_start=1 /transl_table=11 /product="putative metallo-dependent hydrolase domain deaminase" /protein_id="NP_414858.1" /db_xref="GI:16128309" /db_xref="ASAP:ABE-0001109" /db_xref="UniProtKB/Swiss-Prot:P77554" /db_xref="EcoGene:EG13594" /db_xref="GeneID:944976" /translation="MKESNSRREFLSQSGKMVTAAALFGTSVPLAHAAVAGTLNCEAN NTMKITDPHYYLDNVLLETGFDYENGVAVQTRTARQTVEIQDGKIVALRENKLHPDAT LPHYDAGGKLMLPTTRDMHIHLDKTFYGGPWRSLNRPAGTTIQDMIKLEQKMLPELQP YTQERAEKLIDLLQSKGTTIARSHCNIEPVSGLKNLQNLQAVLARRQAGFECEIVAFP QHGLLLSKSEPLMREAMQAGAHYVGGLDPTSVDGAMEKSLDTMFQIALDYDKGVDIHL HETTPAGVAAINYMVETVEKTPQLKGKLTISHAFALATLNEQQVDELANRMVVQQISI ASTVPIGTLHMPLKQLHDKGVKVMTGTDSVIDHWSPYGLGDMLEKANLYAQLYIRPNE QNLSRSLFLATGDVLPLNEKGERVWPKAQDDASFVLVDASCSAEAVARISPRTATFHK GQLVWGSVAG" gene 342884..343933 /gene="yahK" /locus_tag="b0325" /gene_synonym="ECK0323; JW0317" /db_xref="EcoGene:EG13595" /db_xref="GeneID:944975" CDS 342884..343933 /gene="yahK" /locus_tag="b0325" /gene_synonym="ECK0323; JW0317" /function="enzyme; Degradation of small molecules: Carbon compounds" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="broad specificity NADPH-dependent aldehyde reductase, Zn-containing" /protein_id="NP_414859.1" /db_xref="GI:16128310" /db_xref="ASAP:ABE-0001113" /db_xref="UniProtKB/Swiss-Prot:P75691" /db_xref="EcoGene:EG13595" /db_xref="GeneID:944975" /translation="MKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDL HQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDG LENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAG ITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALG ADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKS PEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGIVADIEMIRADQINEAYERMLRG DVKYRFVIDNRTLTD" gene 344176..344991 /gene="yahL" /locus_tag="b0326" /gene_synonym="ECK0324; JW0318" /db_xref="EcoGene:EG13596" /db_xref="GeneID:944970" CDS 344176..344991 /gene="yahL" /locus_tag="b0326" /gene_synonym="ECK0324; JW0318" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_414860.1" /db_xref="GI:16128311" /db_xref="ASAP:ABE-0001117" /db_xref="UniProtKB/Swiss-Prot:P77393" /db_xref="EcoGene:EG13596" /db_xref="GeneID:944970" /translation="MISLKAPHNNLMPYTQQSILNTVKNNQLPEDIKSSLVSCVDIFK VLIKQYYDYPYDCRDDLVDDDKLIHLMAAVRDCEWSDDNALTINVQFNDFPGFYDWMD YPDHPVKFVFHILENQKGTVWVYDQDDAFLDIKANVQAGRFTGLKKLVQFIDSVRTDC KCILLEYHMPLLRIFPKGKECMHVEKWLREMSSIPETDAPIKQALAHGLLLHLKNIYP VFPESLVMLLLSVLDVKTYRDDARLNEWISNRVQELGDRYYPVNKHVKIRYTL" gene 345404..345649 /gene="yahM" /locus_tag="b0327" /gene_synonym="ECK0325; JW5044" /db_xref="EcoGene:EG13597" /db_xref="GeneID:944969" CDS 345404..345649 /gene="yahM" /locus_tag="b0327" /gene_synonym="ECK0325; JW5044" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_414861.2" /db_xref="GI:90111114" /db_xref="ASAP:ABE-0001120" /db_xref="UniProtKB/Swiss-Prot:P75692" /db_xref="EcoGene:EG13597" /db_xref="GeneID:944969" /translation="MAVQLFKTLLNQIPLLSSLQSGTLPLFGYSGWGRPMKKAHTGES GLKWEAKDSSKLIGNKDHALRGLSSPMAVIRQIRLIT" gene complement(345666..346337) /gene="yahN" /locus_tag="b0328" /gene_synonym="ECK0326; JW0320" /db_xref="EcoGene:EG13598" /db_xref="GeneID:944968" CDS complement(345666..346337) /gene="yahN" /locus_tag="b0328" /gene_synonym="ECK0326; JW0320" /function="transport; Not classified" /note="putative cytochrome subunit of dehydrogenase" /codon_start=1 /transl_table=11 /product="amino acid exporter for proline, lysine, glutamate, homoserine" /protein_id="NP_414862.1" /db_xref="GI:16128313" /db_xref="ASAP:ABE-0001122" /db_xref="UniProtKB/Swiss-Prot:P75693" /db_xref="EcoGene:EG13598" /db_xref="GeneID:944968" /translation="MMQLVHLFMDEITMDPLHAVYLTVGLFVITFFNPGANLFVVVQT SLASGRRAGVLTGLGVALGDAFYSGLGLFGLATLITQCEEIFSLIRIVGGAYLLWFAW CSMRRQSTPQMSTLQQPISAPWYVFFRRGLITDLSNPQTVLFFISIFSVTLNAETPTW ARLMAWAGIVLASIIWRVFLSQAFSLPAVRRAYGRMQRVASRVIGAIIGVFALRLIYE GVTQR" gene 346484..346759 /gene="yahO" /locus_tag="b0329" /gene_synonym="ECK0327; JW0321" /db_xref="EcoGene:EG13599" /db_xref="GeneID:944985" CDS 346484..346759 /gene="yahO" /locus_tag="b0329" /gene_synonym="ECK0327; JW0321" /codon_start=1 /transl_table=11 /product="periplasmic protein, function unknown, YhcN family" /protein_id="NP_414863.1" /db_xref="GI:16128314" /db_xref="ASAP:ABE-0001130" /db_xref="UniProtKB/Swiss-Prot:P75694" /db_xref="EcoGene:EG13599" /db_xref="GeneID:944985" /translation="MKIISKMLVGALALAVTNVYAAELMTKAEFEKVESQYEKIGDIS TSNEMSTADAKEDLIKKADEKGADVLVLTSGQTDNKIHGTANIYKKK" repeat_region 346824..346853 /note="REP24 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(346857..348443) /gene="prpR" /locus_tag="b0330" /gene_synonym="ECK0328; JW0322; yahP" /db_xref="EcoGene:EG13600" /db_xref="GeneID:944987" CDS complement(346857..348443) /gene="prpR" /locus_tag="b0330" /gene_synonym="ECK0328; JW0322; yahP" /function="regulator; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0019395 - fatty acid oxidation; GO:0006350 - transcription" /note="regulator for prp operon" /codon_start=1 /transl_table=11 /product="propionate catabolism operon regulatory protein" /protein_id="NP_414864.1" /db_xref="GI:16128315" /db_xref="ASAP:ABE-0001133" /db_xref="UniProtKB/Swiss-Prot:P77743" /db_xref="EcoGene:EG13600" /db_xref="GeneID:944987" /translation="MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQL GFEKAVTYIRKKLANERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDVLQALAKAGK LTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAG LITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDM LGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSH PFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP LQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGRFRRDLFYRLSILR LQLPPLRERVADILPLAESFLKVSLAALSAPFSAALRQGLQASETVLLHYDWPGNIRE LRNMMERLALFLSVEPTPDLTPQFMQLLLPELARESAKTPAPRLLTPQQALEKFNGDK TAAANYLGISRTTFWRRLKS" gene 348682..349572 /gene="prpB" /locus_tag="b0331" /gene_synonym="ECK0329; JW0323; yahQ" /db_xref="EcoGene:EG13601" /db_xref="GeneID:944990" CDS 348682..349572 /gene="prpB" /locus_tag="b0331" /gene_synonym="ECK0329; JW0323; yahQ" /EC_number="4.1.3.30" /function="putative enzyme; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0019395 - fatty acid oxidation" /note="putative phosphonomutase 2" /codon_start=1 /transl_table=11 /product="2-methylisocitrate lyase" /protein_id="NP_414865.1" /db_xref="GI:16128316" /db_xref="ASAP:ABE-0001138" /db_xref="UniProtKB/Swiss-Prot:P77541" /db_xref="EcoGene:EG13601" /db_xref="GeneID:944990" /translation="MSLHSPGKAFRAALTKENPLQIVGTINANHALLAQRAGYQAIYL SGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVK SMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTD ALAVEGLDAAIERAQAYVEAGAEMLFPEAITELAMYRQFADAVQVPILANITEFGATP LFTTDELRSAHVAMALYPLSAFRAMNRAAEHVYNVLRQEGTQKSVIDTMQTRNELYES INYYQYEEKLDNLFARSQVK" repeat_region 349605..349969 /note="REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences" gene 350012..351181 /gene="prpC" /locus_tag="b0333" /gene_synonym="ECK0330; JW0324; yahS; yzzD" /db_xref="EcoGene:EG11756" /db_xref="GeneID:947528" CDS 350012..351181 /gene="prpC" /locus_tag="b0333" /gene_synonym="ECK0330; JW0324; yahS; yzzD" /EC_number="2.3.3.1" /function="putative enzyme; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0019395 - fatty acid oxidation" /note="putative citrate synthase; propionate metabolism?" /codon_start=1 /transl_table=11 /product="2-methylcitrate synthase" /protein_id="NP_414867.1" /db_xref="GI:16128318" /db_xref="ASAP:ABE-0001148" /db_xref="UniProtKB/Swiss-Prot:P31660" /db_xref="EcoGene:EG11756" /db_xref="GeneID:947528" /translation="MSDTTILQNSTHVIKPKKSVALSGVPAGNTALCTVGKSGNDLHY RGYDILDLAKHCEFEEVAHLLIHGKLPTRDELAAYKTKLKALRGLPANVRTVLEALPA ASHPMDVMRTGVSALGCTLPEKEGHTVSGARDIADKLLASLSSILLYWYHYSHNGERI QPETDDDSIGGHFLHLLHGEKPSQSWEKAMHISLVLYAEHEFNASTFTSRVIAGTGSD MYSAIIGAIGALRGPKHGGANEVSLEIQQRYETPDEAEADIRKRVENKEVVIGFGHPV YTIADPRHQVIKRVAKQLSQEGGSLKMYNIADRLETVMWESKKMFPNLDWFSAVSYNM MGVPTEMFTPLFVIARVTGWAAHIIEQRQDNKIIRPSANYVGPEDRPFVALDKRQ" gene 351215..352666 /gene="prpD" /locus_tag="b0334" /gene_synonym="acnC; ECK0331; JW0325; yahT" /db_xref="EcoGene:EG13603" /db_xref="GeneID:945931" CDS 351215..352666 /gene="prpD" /locus_tag="b0334" /gene_synonym="acnC; ECK0331; JW0325; yahT" /EC_number="4.2.1.79" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="2-methylcitrate dehydratase" /protein_id="NP_414868.1" /db_xref="GI:16128319" /db_xref="ASAP:ABE-0001152" /db_xref="UniProtKB/Swiss-Prot:P77243" /db_xref="EcoGene:EG13603" /db_xref="GeneID:945931" /translation="MSAQINNIRPEFDREIVDIVDYVMNYEISSKVAYDTAHYCLLDT LGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIGAMIRWLDFN DTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLTMKQVLTAMIKAHEIQGCIAL ENSFNRVGLDHVLLVKVASTAVVAEMLGLTREEILNAVSLAWVDGQSLRTYRHAPNTG TRKSWAAGDATSRAVRLALMAKTGEMGYPSALTAPVWGFYDVSFKGESFRFQRPYGSY VMENVLFKISFPAEFHSQTAVEAAMTLYEQMQAAGKTAADIEKVTIRTHEACIRIIDK KGPLNNPADRDHCIQYMVAIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFT ADYHDPEKRAIANAITLEFTDGTRFEEVVVEYPIGHARRRQDGIPKLVDKFKINLARQ FPTRQQQRILEVSLDRARLEQMPVNEYLDLYVI" gene 352706..354592 /gene="prpE" /locus_tag="b0335" /gene_synonym="ECK0332; JW0326; yahU" /db_xref="EcoGene:EG13604" /db_xref="GeneID:946891" CDS 352706..354592 /gene="prpE" /locus_tag="b0335" /gene_synonym="ECK0332; JW0326; yahU" /function="putative enzyme; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0019395 - fatty acid oxidation" /note="putative propionyl-CoA synthetase" /codon_start=1 /transl_table=11 /product="propionate--CoA ligase" /protein_id="NP_414869.1" /db_xref="GI:16128320" /db_xref="ASAP:ABE-0001154" /db_xref="UniProtKB/Swiss-Prot:P77495" /db_xref="EcoGene:EG13604" /db_xref="GeneID:946891" /translation="MSFSEFYQRSINEPEQFWAEQARRIDWQTPFTQTLDHSNPPFAR WFCEGRTNLCHNAIDRWLEKQPEALALIAVSSETEEERTFTFRQLHDEVNAVASMLRS LGVQRGDRVLVYMPMIAEAHITLLACARIGAIHSVVFGGFASHSVAARIDDAKPVLIV SADAGARGGKIIPYKKLLDDAISQAQHQPRHVLLVDRGLAKMARVSGRDVDFASLRHQ HIGARVPVAWLESNETSCILYTSGTTGKPKGVQRDVGGYAVALATSMDTIFGGKAGSV FFCASDIGWVVGHSYIVYAPLLAGMATIVYEGLPTWPDCGVWWTIVEKYQVSRMFSAP TAIRVLKKFPTAEIRKHDLSSLEVLYLAGEPLDEPTASWVSNTLDVPVIDNYWQTESG WPIMAIARGLDDRPTRLGSPGVPMYGYNVQLLNEVTGEPCGVNEKGMLVVEGPLPPGC IQTIWGDDGRFVKTYWSLFSRPVYATFDWGIRDADGYHFILGRTDDVINVAGHRLGTR EIEESISSHPGVAEVAVVGVKDALKGQVAVAFVIPKESDSLEDRDVAHSQEKAIMALV DSQIGNFGRPAHVWFVSQLPKTRSGKMLRRTIQAICEGRDPGDLTTIDDPASLDQIRQ AMEE" repeat_region 354599..354769 /note="REP26 (repetitive extragenic palindromic) element; contains 4 REP sequences" gene 354922..356181 /gene="codB" /locus_tag="b0336" /gene_synonym="ECK0333; JW0327" /db_xref="EcoGene:EG11327" /db_xref="GeneID:944994" CDS 354922..356181 /gene="codB" /locus_tag="b0336" /gene_synonym="ECK0333; JW0327" /function="transport; Transport of small molecules: Nucleosides, purines, pyrimidines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /note="cytosine permease/transport" /codon_start=1 /transl_table=11 /product="cytosine transporter" /protein_id="NP_414870.1" /db_xref="GI:16128321" /db_xref="ASAP:ABE-0001159" /db_xref="UniProtKB/Swiss-Prot:P0AA82" /db_xref="EcoGene:EG11327" /db_xref="GeneID:944994" /translation="MSQDNNFSQGPVPQSARKGVLALTFVMLGLTFFSASMWTGGTLG TGLSYHDFFLAVLIGNLLLGIYTSFLGYIGAKTGLTTHLLARFSFGVKGSWLPSLLLG GTQVGWFGVGVAMFAIPVGKATGLDINLLIAVSGLLMTVTVFFGISALTVLSVIAVPA IACLGGYSVWLAVNGMGGLDALKAVVPAQPLDFNVALALVVGSFISAGTLTADFVRFG RNAKLAVLVAMVAFFLGNSLMFIFGAAGAAALGMADISDVMIAQGLLLPAIVVLGLNI WTTNDNALYASGLGFANITGMSSKTLSVINGIIGTVCALWLYNNFVGWLTFLSAAIPP VGGVIIADYLMNRRRYEHFATTRMMSVNWVAILAVALGIAAGHWLPGIVPVNAVLGGA LSYLILNPILNRKTTAAMTHVEANSVE" gene 356171..357454 /gene="codA" /locus_tag="b0337" /gene_synonym="ECK0334; JW0328" /db_xref="EcoGene:EG11326" /db_xref="GeneID:944996" CDS 356171..357454 /gene="codA" /locus_tag="b0337" /gene_synonym="ECK0334; JW0328" /EC_number="3.5.4.1" /function="enzyme; Salvage of nucleosides and nucleotides" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="cytosine/isoguanine deaminase" /protein_id="NP_414871.1" /db_xref="GI:16128322" /db_xref="ASAP:ABE-0001161" /db_xref="UniProtKB/Swiss-Prot:P25524" /db_xref="EcoGene:EG11326" /db_xref="GeneID:944996" /translation="MSNNALQTIINARLPGEEGLWQIHLQDGKISAIDAQSGVMPITE NSLDAEQGLVIPPFVEPHIHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVK QRAWQTLKWQIANGIQHVRTHVDVSDATLTALKAMLEVKQEVAPWIDLQIVAFPQEGI LSYPNGEALLEEALRLGADVVGAIPHFEFTREYGVESLHKTFALAQKYDRLIDVHCDE IDDEQSRFVETVAALAHHEGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVAN PLVNIHLQGRFDTYPKRRGITRVKEMLESGINVCFGHDDVFDPWYPLGTANMLQVLHM GLHVCQLMGYGQINDGLNLITHHSARTLNLQDYGIAAGNSANLIILPAENGFDALRRQ VPVRYSVRGGKVIASTQPAQTTVYLEQPEAIDYKR" repeat_region 357484..357562 /note="REP27 (repetitive extragenic palindromic) element; contains 2 REP sequences" repeat_region 357684..357762 /note="REP28 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(357791..358690) /gene="cynR" /locus_tag="b0338" /gene_synonym="ECK0335; JW5894" /db_xref="EcoGene:EG11421" /db_xref="GeneID:945001" CDS complement(357791..358690) /gene="cynR" /locus_tag="b0338" /gene_synonym="ECK0335; JW5894" /function="regulator; Central intermediary metabolism: Pool, multipurpose conversions" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription; GO:0006805 - xenobiotic metabolic process" /note="cyn operon positive regulator" /codon_start=1 /transl_table=11 /product="transcriptional activator of cyn operon; autorepressor" /protein_id="NP_414872.3" /db_xref="GI:157783149" /db_xref="ASAP:ABE-0001165" /db_xref="UniProtKB/Swiss-Prot:P27111" /db_xref="EcoGene:EG11421" /db_xref="GeneID:945001" /translation="MLSRHINYFLAVAEHGSFTRAASALHVSQPALSQQIRQLEESLG VPLFDRSGRTIRLTDAGEVWRQYASRALQELGAGKRAIHDVADLTRGSLRIAVTPTFT SYFIGPLMADFYARYPSITLQLQEMSQEKIEDMLCRDELDVGIAFAPVHSPELEAIPL LTESLALVVAQHHPLAVHEQVALSRLHDEKLVLLSAEFATREQIDHYCEKAGLHPQVV IEANSISAVLELIRRTSLSTLLPAAIATQHDGLKAISLAPPLLERTAVLLRRKNSWQT AAAKAFLHMALDKCAVVGGNESR" gene 358799..359458 /gene="cynT" /locus_tag="b0339" /gene_synonym="ECK0336; JW0330" /db_xref="EcoGene:EG10176" /db_xref="GeneID:946548" CDS 358799..359458 /gene="cynT" /locus_tag="b0339" /gene_synonym="ECK0336; JW0330" /EC_number="4.2.1.1" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /experiment="N-terminus verified by Edman degradation: PMID 1740425" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009440 - cyanate catabolic process; GO:0006805 - xenobiotic metabolic process" /codon_start=1 /transl_table=11 /product="carbonic anhydrase" /protein_id="NP_414873.1" /db_xref="GI:16128324" /db_xref="ASAP:ABE-0001171" /db_xref="UniProtKB/Swiss-Prot:P0ABE9" /db_xref="EcoGene:EG10176" /db_xref="GeneID:946548" /translation="MKEIIDGFLKFQREAFPKREALFKQLATQQSPRTLFISCSDSRL VPELVTQREPGDLFVIRNAGNIVPSYGPEPGGVSASVEYAVAALRVSDIVICGHSNCG AMTAIASCQCMDHMPAVSHWLRYADSARVVNEARPHSDLPSKAAAMVRENVIAQLANL QTHPSVRLALEEGRIALHGWVYDIESGSIAAFDGATRQFVPLAANPRVCAIPLRQPTA A" gene 359489..359959 /gene="cynS" /locus_tag="b0340" /gene_synonym="cnt; ECK0337; JW0331" /db_xref="EcoGene:EG10175" /db_xref="GeneID:948998" CDS 359489..359959 /gene="cynS" /locus_tag="b0340" /gene_synonym="cnt; ECK0337; JW0331" /EC_number="4.2.1.104" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /experiment="N-terminus verified by Edman degradation: PMID 6336748" /GO_process="GO:0009440 - cyanate catabolic process; GO:0006807 - nitrogen compound metabolic process; GO:0006805 - xenobiotic metabolic process" /note="cyanate aminohydrolase, cyanase" /codon_start=1 /transl_table=11 /product="cyanate aminohydrolase" /protein_id="NP_414874.1" /db_xref="GI:16128325" /db_xref="ASAP:ABE-0001173" /db_xref="UniProtKB/Swiss-Prot:P00816" /db_xref="EcoGene:EG10175" /db_xref="GeneID:948998" /translation="MIQSQINRNIRLDLADAILLSKAKKDLSFAEIADGTGLAEAFVT AALLGQQALPADAARLVGAKLDLDEDSILLLQMIPLRGCIDDRIPTDPTMYRFYEMLQ VYGTTLKALVHEKFGDGIISAINFKLDVKKVADPEGGERAVITLDGKYLPTKPF" gene 359992..361146 /gene="cynX" /locus_tag="b0341" /gene_synonym="ECK0338; JW0332" /db_xref="EcoGene:EG10177" /db_xref="GeneID:946770" CDS 359992..361146 /gene="cynX" /locus_tag="b0341" /gene_synonym="ECK0338; JW0332" /function="transport; Transport of small molecules: Anions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009440 - cyanate catabolic process; GO:0006805 - xenobiotic metabolic process" /note="cyanate transport" /codon_start=1 /transl_table=11 /product="putative cyanate transporter" /protein_id="NP_414875.1" /db_xref="GI:16128326" /db_xref="ASAP:ABE-0001175" /db_xref="UniProtKB/Swiss-Prot:P17583" /db_xref="EcoGene:EG10177" /db_xref="GeneID:946770" /translation="MLLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALP VVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGI GIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWW ALPAVVALFAWWWQSAREVASSHKTTTTPVRVVFTPRAWTLGVYFGLINGGYASLIAW LPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFC GFIWLPMQLPVLWAMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAG LAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPVRFPQLWVKEA" repeat_region 361208..361236 /note="REP29 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(361249..361860) /gene="lacA" /locus_tag="b0342" /gene_synonym="ECK0339; JW0333" /db_xref="EcoGene:EG10524" /db_xref="GeneID:945674" CDS complement(361249..361860) /gene="lacA" /locus_tag="b0342" /gene_synonym="ECK0339; JW0333" /EC_number="2.3.1.18" /function="enzyme; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 3922433" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="thiogalactoside acetyltransferase" /protein_id="NP_414876.1" /db_xref="GI:16128327" /db_xref="ASAP:ABE-0001177" /db_xref="UniProtKB/Swiss-Prot:P07464" /db_xref="EcoGene:EG10524" /db_xref="GeneID:945674" /translation="MNMPMTERIRAGKLFTDMCEGLPEKRLRGKTLMYEFNHSHPSEV EKRESLIKEMFATVGENAWVEPPVYFSYGSNIHIGRNFYANFNLTIVDDYTVTIGDNV LIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGDNSVIGA GSIVTKDIPPNVVAAGVPCRVIREINDRDKHYYFKDYKVESSV" repeat_region 361883..361916 /note="REP30 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(361926..363179) /gene="lacY" /locus_tag="b0343" /gene_synonym="ECK0340; JW0334" /db_xref="EcoGene:EG10526" /db_xref="GeneID:949083" CDS complement(361926..363179) /gene="lacY" /locus_tag="b0343" /gene_synonym="ECK0340; JW0334" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="galactoside permease (lactose permease, M protein) (MFS family)" /codon_start=1 /transl_table=11 /product="lactose permease" /protein_id="NP_414877.1" /db_xref="GI:16128328" /db_xref="ASAP:ABE-0001181" /db_xref="UniProtKB/Swiss-Prot:P02920" /db_xref="EcoGene:EG10526" /db_xref="GeneID:949083" /translation="MYYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSD TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYN ILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALCASIVGI MFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFR QPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCF KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGF TLISVFTLSGPGPLSLLRRQVNEVA" gene complement(363231..366305) /gene="lacZ" /locus_tag="b0344" /gene_synonym="ECK0341; JW0335" /db_xref="EcoGene:EG10527" /db_xref="GeneID:945006" CDS complement(363231..366305) /gene="lacZ" /locus_tag="b0344" /gene_synonym="ECK0341; JW0335" /EC_number="3.2.1.23" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="beta-D-galactosidase" /protein_id="NP_414878.1" /db_xref="GI:16128329" /db_xref="ASAP:ABE-0001183" /db_xref="UniProtKB/Swiss-Prot:P00722" /db_xref="EcoGene:EG10527" /db_xref="GeneID:945006" /translation="MTMITDSLAVVLQRRDWENPGVTQLNRLAAHPPFASWRNSEEAR TDRPSQQLRSLNGEWRFAWFPAPEAVPESWLECDLPEADTVVVPSNWQMHGYDAPIYT NVTYPITVNPPFVPTENPTGCYSLTFNVDESWLQEGQTRIIFDGVNSAFHLWCNGRWV GYGQDSRLPSEFDLSAFLRAGENRLAVMVLRWSDGSYLEDQDMWRMSGIFRDVSLLHK PTTQISDFHVATRFNDDFSRAVLEAEVQMCGELRDYLRVTVSLWQGETQVASGTAPFG GEIIDERGGYADRVTLRLNVENPKLWSAEIPNLYRAVVELHTADGTLIEAEACDVGFR EVRIENGLLLLNGKPLLIRGVNRHEHHPLHGQVMDEQTMVQDILLMKQNNFNAVRCSH YPNHPLWYTLCDRYGLYVVDEANIETHGMVPMNRLTDDPRWLPAMSERVTRMVQRDRN HPSVIIWSLGNESGHGANHDALYRWIKSVDPSRPVQYEGGGADTTATDIICPMYARVD EDQPFPAVPKWSIKKWLSLPGETRPLILCEYAHAMGNSLGGFAKYWQAFRQYPRLQGG FVWDWVDQSLIKYDENGNPWSAYGGDFGDTPNDRQFCMNGLVFADRTPHPALTEAKHQ QQFFQFRLSGQTIEVTSEYLFRHSDNELLHWMVALDGKPLASGEVPLDVAPQGKQLIE LPELPQPESAGQLWLTVRVVQPNATAWSEAGHISAWQQWRLAENLSVTLPAASHAIPH LTTSEMDFCIELGNKRWQFNRQSGFLSQMWIGDKKQLLTPLRDQFTRAPLDNDIGVSE ATRIDPNAWVERWKAAGHYQAEAALLQCTADTLADAVLITTAHAWQHQGKTLFISRKT YRIDGSGQMAITVDVEVASDTPHPARIGLNCQLAQVAERVNWLGLGPQENYPDRLTAA CFDRWDLPLSDMYTPYVFPSENGLRCGTRELNYGPHQWRGDFQFNISRYSQQQLMETS HRHLLHAEEGTWLNIDGFHMGIGGDDSWSPSVSAEFQLSAGRYHYQLVWCQK" gene complement(366428..367510) /gene="lacI" /locus_tag="b0345" /gene_synonym="ECK0342; JW0336" /db_xref="EcoGene:EG10525" /db_xref="GeneID:945007" CDS complement(366428..367510) /gene="lacI" /locus_tag="b0345" /gene_synonym="ECK0342; JW0336" /function="regulator; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 1107032,4554534,4557395,4571224" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006350 - transcription" /note="transcriptional repressor of the lac operon" /codon_start=1 /transl_table=11 /product="lactose-inducible lac operon transcriptional repressor" /protein_id="NP_414879.3" /db_xref="GI:49176012" /db_xref="ASAP:ABE-0001189" /db_xref="UniProtKB/Swiss-Prot:P03023" /db_xref="EcoGene:EG10525" /db_xref="GeneID:945007" /translation="MKPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAE LNYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVAAIKSRADQLGASVVVSMVERS GVEACKAAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSII FSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREG DWSAMSGFQQTMQMLNEGIVPTAMLVANDQMALGAMRAITESGLRVGADISVVGYDDT EDSSCYIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPVSLVKRKTTLAPNT QTASPRALADSLMQLARQVSRLESGQ" gene complement(367587..368420) /gene="mhpR" /locus_tag="b0346" /gene_synonym="ECK0343; JW0337" /db_xref="EcoGene:EG20276" /db_xref="GeneID:945938" CDS complement(367587..368420) /gene="mhpR" /locus_tag="b0346" /gene_synonym="ECK0343; JW0337" /function="regulator; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 12748194" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0019395 - fatty acid oxidation; GO:0006350 - transcription" /note="transcriptional regulator for mhp operon" /codon_start=1 /transl_table=11 /product="mhp operon transcriptional activator" /protein_id="NP_414880.2" /db_xref="GI:145698223" /db_xref="ASAP:ABE-0001191" /db_xref="UniProtKB/Swiss-Prot:P77569" /db_xref="EcoGene:EG20276" /db_xref="GeneID:945938" /translation="MQNNEQTEYKTVRGLTRGLMLLNMLNKLDGGASVGLLAELSGLH RTTVRRLLETLQEEGYVRRSPSDDSFRLTIKVRQLSEGFRDEQWISALAAPLLGDLLR EVVWPTDVSTLDVDAMVVRETTHRFSRLSFHRAMVGRRLPLLKTASGLTWLAFCPEQD RKELIEMLASRPGDDYQLAREPLKLEAILARARKEGYGQNYRGWDQEEKIASIAVPLR SEQRVIGCLNLVYMASAMTIEQAAEKHLPALQRVAKQIEEGVESQAILVAGRRSGMHL R" gene 368611..370275 /gene="mhpA" /locus_tag="b0347" /gene_synonym="ECK0344; JW0338" /db_xref="EcoGene:EG20273" /db_xref="GeneID:945197" CDS 368611..370275 /gene="mhpA" /locus_tag="b0347" /gene_synonym="ECK0344; JW0338" /EC_number="1.14.13.-" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0019395 - fatty acid oxidation" /codon_start=1 /transl_table=11 /product="3-(3-hydroxyphenyl)propionate hydroxylase" /protein_id="NP_414881.1" /db_xref="GI:16128332" /db_xref="ASAP:ABE-0001196" /db_xref="UniProtKB/Swiss-Prot:P77397" /db_xref="EcoGene:EG20273" /db_xref="GeneID:945197" /translation="MAIQHPDIQPAVNHSVQVAIAGAGPVGLMMANYLGQMGIDVLVV EKLDKLIDYPRAIGIDDEALRTMQSVGLVDDVLPHTTPWHAMRFLTPKGRCFADIQPM TDEFGWPRRNAFIQPQVDAVMLEGVSRFPNVRCLFSRELEAFSQQDDEVTLHLKTAEG QREIVKAQWLVACDGGASFVRRTLNVPFEGKTAPNQWIVVDIANDPLSTPHIYLCCDP VRPYVSAALPHAVRRFEFMVMPGETEEQLREPQNMRKLLSKVLPNPDNVELIRQRVYT HNARLAQRFRIDRVLLAGDAAHIMPVWQGQGYNSGMRDAFNLAWKLALVIQGKARDAL LDTYQQERRDHAKAMIDLSVTAGNVLAPPKRWQGTLRDGVSWLLNYLPPVKRYFLEMR FKPMPQYYGGALMREGEAKHSPVGKMFIQPKVTLENGDVTLLDNAIGANFAVIGWGCN PLWGMSDEQIQQWRALGTRFIQVVPEVQIHTAQDNHDGVLRVGDTQGRLRSWFAQHNA SLVVMRPDRFVAATAIPQTLGKTLNKLASVMTLTRPDADVSVEKVA" gene 370277..371221 /gene="mhpB" /locus_tag="b0348" /gene_synonym="ECK0345; JW0339" /db_xref="EcoGene:EG20274" /db_xref="GeneID:945047" CDS 370277..371221 /gene="mhpB" /locus_tag="b0348" /gene_synonym="ECK0345; JW0339" /EC_number="1.13.11.-" /function="enzyme; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 8399388" /GO_process="GO:0019395 - fatty acid oxidation" /codon_start=1 /transl_table=11 /product="2,3-dihydroxyphenylpropionate 1,2-dioxygenase" /protein_id="NP_414882.1" /db_xref="GI:16128333" /db_xref="ASAP:ABE-0001198" /db_xref="UniProtKB/Swiss-Prot:P0ABR9" /db_xref="EcoGene:EG20274" /db_xref="GeneID:945047" /translation="MHAYLHCLSHSPLVGYVDPAQEVLDEVNGVIASARERIAAFSPE LVVLFAPDHYNGFFYDVMPPFCLGVGATAIGDFGSAAGELPVPVELAEACAHAVMKSG IDLAVSYCMQVDHGFAQPLEFLLGGLDKVPVLPVFINGVATPLPGFQRTRMLGEAIGR FTSTLNKRVLFLGSGGLSHQPPVPELAKADAHMRDRLLGSGKDLPASERELRQQRVIS AAEKFVEDQRTLHPLNPIWDNQFMTLLEQGRIQELDAVSNEELSAIAGKSTHEIKTWV AAFAAISAFGNWRSEGRYYRPIPEWIAGFGSLSARTEN" gene 371239..372105 /gene="mhpC" /locus_tag="b0349" /gene_synonym="ECK0346; JW0340" /db_xref="EcoGene:EG20275" /db_xref="GeneID:944954" CDS 371239..372105 /gene="mhpC" /locus_tag="b0349" /gene_synonym="ECK0346; JW0340" /EC_number="3.7.1.-" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0019395 - fatty acid oxidation" /codon_start=1 /transl_table=11 /product="2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase" /protein_id="NP_414883.5" /db_xref="GI:459201369" /db_xref="ASAP:ABE-0001201" /db_xref="UniProtKB/Swiss-Prot:P77044" /db_xref="EcoGene:EG20275" /db_xref="GeneID:944954" /translation="MSYQPQTEAATSRFLNVEEAGKTLRIHFNDCGQGDETVVLLHGS GPGATGWANFSRNIDPLVEAGYRVILLDCPGWGKSDSVVNSGSRSDLNARILKSVVDQ LDIAKIHLLGNSMGGHSSVAFTLKWPERVGKLVLMGGGTGGMSLFTPMPTEGIKRLNQ LYRQPTIENLKLMMDIFVFDTSDLTDALFEARLNNMLSRRDHLENFVKSLEANPKQFP DFGPRLAEIKAQTLIVWGRNDRFVPMDAGLRLLSGIAGSELHIFRDCGHWAQWEHADA FNQLVLNFLARP" gene 372115..372924 /gene="mhpD" /locus_tag="b0350" /gene_synonym="ECK0347; JW0341; mhpS" /db_xref="EcoGene:EG14274" /db_xref="GeneID:944768" CDS 372115..372924 /gene="mhpD" /locus_tag="b0350" /gene_synonym="ECK0347; JW0341; mhpS" /EC_number="4.2.1.80" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0019395 - fatty acid oxidation" /codon_start=1 /transl_table=11 /product="2-keto-4-pentenoate hydratase" /protein_id="NP_414884.2" /db_xref="GI:90111116" /db_xref="ASAP:ABE-0001205" /db_xref="UniProtKB/Swiss-Prot:P77608" /db_xref="EcoGene:EG14274" /db_xref="GeneID:944768" /translation="MTKHTLEQLAADLRRAAEQGEAIAPLRDLIGIDNAEAAYAIQHI NVQHDVAQGRRVVGRKVGLTHPKVQQQLGVDQPDFGTLFADMCYGDNEIIPFSRVLQP RIEAEIALVLNRDLPATDITFDELYNAIEWVLPALEVVGSRIRDWSIQFVDTVADNAS CGVYVIGGPAQRPAGLDLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASL GEPLRTGDIILTGALGPMVAVNAGDRFEAHIEGIGSVAATFSSAAPKGSLS" gene 372921..373871 /gene="mhpF" /locus_tag="b0351" /gene_synonym="ECK0348; JW0342" /db_xref="EcoGene:EG13625" /db_xref="GeneID:945008" CDS 372921..373871 /gene="mhpF" /locus_tag="b0351" /gene_synonym="ECK0348; JW0342" /EC_number="1.2.1.10" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0019395 - fatty acid oxidation" /note="acetaldehyde dehydrogenase" /codon_start=1 /transl_table=11 /product="acetaldehyde-CoA dehydrogenase II, NAD-binding" /protein_id="NP_414885.1" /db_xref="GI:16128336" /db_xref="ASAP:ABE-0001207" /db_xref="UniProtKB/Swiss-Prot:P77580" /db_xref="EcoGene:EG13625" /db_xref="GeneID:945008" /translation="MSKRKVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGL ARARRMGVATTHEGVIGLMNMPEFADIDIVFDATSAGAHVKNDAALREAKPDIRLIDL TPAAIGPYCVPVVNLEANVDQLNVNMVTCGGQATIPMVAAVSRVARVHYAEIIASIAS KSAGPGTRANIDEFTETTSRAIEVVGGAAKGKAIIVLNPAEPPLMMRDTVYVLSDEAS QDDIEASINEMAEAVQAYVPGYRLKQRVQFEVIPQDKPVNLPGVGQFSGLKTAVWLEV EGAAHYLPAYAGNLDIMTSSALATAEKMAQSLARKAGEAA" gene 373868..374881 /gene="mhpE" /locus_tag="b0352" /gene_synonym="ECK0349; JW0343" /db_xref="EcoGene:EG13292" /db_xref="GeneID:945012" CDS 373868..374881 /gene="mhpE" /locus_tag="b0352" /gene_synonym="ECK0349; JW0343" /EC_number="4.1.3.-" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0019395 - fatty acid oxidation" /note="4-hydroxy-2-ketovalerate aldolase" /codon_start=1 /transl_table=11 /product="4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase, class I" /protein_id="NP_414886.1" /db_xref="GI:16128337" /db_xref="ASAP:ABE-0001209" /db_xref="UniProtKB/Swiss-Prot:P51020" /db_xref="EcoGene:EG13292" /db_xref="GeneID:945012" /translation="MNGKKLYISDVTLRDGMHAIRHQYSLENVRQIAKALDDARVDSI EVAHGDGLQGSSFNYGFGAHSDLEWIEAAADVVKHAKIATLLLPGIGTIHDLKNAWQA GARVVRVATHCTEADVSAQHIQYARELGMDTVGFLMMSHMTTPENLAKQAKLMEGYGA TCIYVVDSGGAMNMSDIRDRFRALKAELKPETQTGMHAHHNLSLGVANSIAAVEEGCD RIDASLAGMGAGAGNAPLEVFIAAADKLGWQHGTDLYALMDAADDLVRPLQDRPVRVD RETLALGYAGVYSSFLRHCETAAARYGLSAVDILVELGKRRMVGGQEDMIVDVALDLR NNK" repeat_region 374930..375365 /note="REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences" gene 375459..376670 /gene="mhpT" /locus_tag="b0353" /gene_synonym="ECK0350; JW5046; yaiK" /db_xref="EcoGene:EG13293" /db_xref="GeneID:944997" CDS 375459..376670 /gene="mhpT" /locus_tag="b0353" /gene_synonym="ECK0350; JW5046; yaiK" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0019395 - fatty acid oxidation" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="3-hydroxyphenylpropionic transporter" /protein_id="NP_414887.2" /db_xref="GI:90111117" /db_xref="ASAP:ABE-0001213" /db_xref="UniProtKB/Swiss-Prot:P77589" /db_xref="EcoGene:EG13293" /db_xref="GeneID:944997" /translation="MSTRTPSSSSSRLMLTIGLCFLVALMEGLDLQAAGIAAGGIAQA FALDKMQMGWIFSAGILGLLPGALVGGMLADRYGRKRILIGSVALFGLFSLATAIAWD FPSLVFARLMTGVGLGAALPNLIALTSEAAGPRFRGTAVSLMYCGVPIGAALAATLGF AGANLAWQTVFWVGGVVPLILVPLLMRWLPESAVFAGEKQSAPPLRALFAPETATATL LLWLCYFFTLLVVYMLINWLPLLLVEQGFQPSQAAGVMFALQMGAASGTLMLGALMDK LRPVTMSLLIYSGMLASLLALGTVSSFNGMLLAGFVAGLFATGGQSVLYALAPLFYSS QIRATGVGTAVAVGRLGAMSGPLLAGKMLALGTGTVGVMAASAPGILVAGLAVFILMS RRSRIQPCADA" gene 376772..377311 /gene="yaiL" /locus_tag="b0354" /gene_synonym="ECK0351; JW0345" /db_xref="EcoGene:EG13294" /db_xref="GeneID:944993" CDS 376772..377311 /gene="yaiL" /locus_tag="b0354" /gene_synonym="ECK0351; JW0345" /function="putative enzyme; Not classified" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="DUF2058 family protein" /protein_id="NP_414888.4" /db_xref="GI:90111118" /db_xref="ASAP:ABE-0001216" /db_xref="UniProtKB/Swiss-Prot:P51024" /db_xref="EcoGene:EG13294" /db_xref="GeneID:944993" /translation="MAKLTLQEQLLKAGLVTSKKAAKVERTAKKSRVQAREARAAVEE NKKAQLERDKQLSEQQKQAALAKEYKAQVKQLIEMNRITIANGDIGFNFTDGNLIKKI FVDKLTQAQLINGRLAIARLLVDNNSEGEYAIIPASVADKIAQRDASSIVLHSALSAE EQDEDDPYADFKVPDDLMW" repeat_region 377335..377521 /note="REP32 (repetitive extragenic palindromic) element; contains 4 REP sequences" gene complement(377535..378368) /gene="frmB" /locus_tag="b0355" /gene_synonym="ECK0352; JW0346; yaiM" /db_xref="EcoGene:EG13295" /db_xref="GeneID:944991" CDS complement(377535..378368) /gene="frmB" /locus_tag="b0355" /gene_synonym="ECK0352; JW0346; yaiM" /function="enzyme; Formaldehyde degradation" /note="putative S-formylglutathione hydrolase" /codon_start=1 /transl_table=11 /product="S-formylglutathione hydrolase" /protein_id="NP_414889.1" /db_xref="GI:16128340" /db_xref="ASAP:ABE-0001219" /db_xref="UniProtKB/Swiss-Prot:P51025" /db_xref="EcoGene:EG13295" /db_xref="GeneID:944991" /translation="MELIEKHVSFGGWQNMYRHYSQSLKCEMNVGVYLPPKAANEKLP VLYWLSGLTCNEQNFITKSGMQRYAAEHNIIVVAPDTSPRGSHVADADRYDLGQGAGF YLNATQAPWNEHYKMYDYIRNELPDLVMHHFPATAKKSISGHSMGGLGALVLALRNPD EYVSVSAFSPIVSPSQVPWGQQAFAAYLAENKDAWLDYDPVSLISQGQRVAEIMVDQG LSDDFYAEQLRTPNLEKICQEMNIKTLIRYHEGYDHSYYFVSSFIGEHIAYHANKLNM R" gene complement(378462..379571) /gene="frmA" /locus_tag="b0356" /gene_synonym="adhC; ECK0353; JW0347" /db_xref="EcoGene:EG50010" /db_xref="GeneID:944988" CDS complement(378462..379571) /gene="frmA" /locus_tag="b0356" /gene_synonym="adhC; ECK0353; JW0347" /EC_number="1.1.1.1" /EC_number="1.1.1.284" /function="enzyme; Energy metabolism, carbon: Fermentation" /experiment="N-terminus verified by Edman degradation: PMID 1731906" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006113 - fermentation" /note="alcohol dehydrogenase class III; formaldehyde dehydrogenase, glutathione-dependent" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase class III; glutathione-dependent formaldehyde dehydrogenase" /protein_id="NP_414890.1" /db_xref="GI:16128341" /db_xref="ASAP:ABE-0001221" /db_xref="UniProtKB/Swiss-Prot:P25437" /db_xref="EcoGene:EG50010" /db_xref="GeneID:944988" /translation="MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDA FTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGK TNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEAN HEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAID TNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALES AHRGWGQSVIIGVAVAGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGD IDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVIRY" gene complement(379606..379881) /gene="frmR" /locus_tag="b0357" /gene_synonym="ECK0354; JW0348; yaiN" /db_xref="EcoGene:EG13296" /db_xref="GeneID:944986" CDS complement(379606..379881) /gene="frmR" /locus_tag="b0357" /gene_synonym="ECK0354; JW0348; yaiN" /note="repressor of frmRAB" /codon_start=1 /transl_table=11 /product="regulator protein that represses frmRAB operon" /protein_id="NP_414891.4" /db_xref="GI:162135894" /db_xref="ASAP:ABE-0001226" /db_xref="UniProtKB/Swiss-Prot:P0AAP3" /db_xref="EcoGene:EG13296" /db_xref="GeneID:944986" /translation="MPSTPEEKKKVLTRVRRIRGQIDALERSLEGDAECRAILQQIAA VRGAANGLMAEVLESHIRETFDRNDCYSREVSQSVDDTIELVRAYLK" gene complement(380069..380842) /gene="yaiO" /locus_tag="b0358" /gene_synonym="ECK0355; JW0349" /db_xref="EcoGene:EG13297" /db_xref="GeneID:945014" CDS complement(380069..380842) /gene="yaiO" /locus_tag="b0358" /gene_synonym="ECK0355; JW0349" /codon_start=1 /transl_table=11 /product="outer membrane protein" /protein_id="NP_414892.1" /db_xref="GI:16128343" /db_xref="ASAP:ABE-0001230" /db_xref="UniProtKB/Swiss-Prot:Q47534" /db_xref="EcoGene:EG13297" /db_xref="GeneID:945014" /translation="MIKRTLLAAAIFSALPAYAGLTSITAGYDFTDYSGDHGNRNLAY AELVAKVENATLLFNLSQGRRDYETEHFNATRGQGAVWYKWNNWLTTRTGIAFADNTP VFARQDFRQDINLALLPKTLFTTGYRYTKYYDDVEVDAWQGGVSLYTGPVITSYRYTH YDSSDAGGSYSNMISVRLNDPRGTGYTQLWLSRGTGAYTYDWTPETRYGSMKSVSLQR IQPLTEQLNLGLTAGKVWYDTPTDDFNGLQLAARLTWKF" gene complement(join(380844..381260,382591..382872)) /gene="yaiX" /locus_tag="b4579" /gene_synonym="ECK0356; JW0350; yaiF" /pseudo /db_xref="EcoGene:EG14236" /db_xref="GeneID:4056039" CDS complement(join(380844..381260,382591..382872)) /gene="yaiX" /locus_tag="b4579" /gene_synonym="ECK0356; JW0350; yaiF" /note="pseudogene, interrupted by IS2A; hexapeptide transferase superfamily; putative transferase" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0001232" /db_xref="ASAP:ABE-0001241" /db_xref="ASAP:ABE-0285111" /db_xref="UniProtKB/Swiss-Prot:P75697" /db_xref="EcoGene:EG14236" /db_xref="GeneID:4056039" mobile_element 381260..382590 /mobile_element_type="insertion sequence:IS2A" gene 381351..381716 /gene="insC1" /locus_tag="b0360" /gene_synonym="ECK0357" /db_xref="EcoGene:EG40003" /db_xref="GeneID:945025" CDS 381351..381716 /gene="insC1" /locus_tag="b0360" /gene_synonym="ECK0357" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_414894.2" /db_xref="GI:145698224" /db_xref="ASAP:ABE-0001237" /db_xref="UniProtKB/Swiss-Prot:P0CF40" /db_xref="EcoGene:EG40003" /db_xref="GeneID:945025" /translation="MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAAS QLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVE YGRAKKWIAHAPLLPGDGE" gene 381674..382579 /gene="insD1" /locus_tag="b0361" /gene_synonym="ECK0358" /db_xref="EcoGene:EG40004" /db_xref="GeneID:945203" CDS 381674..382579 /gene="insD1" /locus_tag="b0361" /gene_synonym="ECK0358" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_414895.1" /db_xref="GI:16128346" /db_xref="ASAP:ABE-0001239" /db_xref="UniProtKB/Swiss-Prot:P0CF53" /db_xref="EcoGene:EG40004" /db_xref="GeneID:945203" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" gene complement(382739..383935) /gene="yaiP" /locus_tag="b0363" /gene_synonym="ECK0360; JW0355" /db_xref="EcoGene:EG13298" /db_xref="GeneID:945308" CDS complement(382739..383935) /gene="yaiP" /locus_tag="b0363" /gene_synonym="ECK0360; JW0355" /function="putative enzyme; Not classified" /GO_process="GO:0000271 - polysaccharide biosynthetic process" /note="polysaccharide metabolism" /codon_start=1 /transl_table=11 /product="putative family 2 glycosyltransferase" /protein_id="NP_414897.1" /db_xref="GI:16128348" /db_xref="ASAP:ABE-0001243" /db_xref="UniProtKB/Swiss-Prot:Q47536" /db_xref="EcoGene:EG13298" /db_xref="GeneID:945308" /translation="MKTWIFICMSIAMLLWFLSTLRRKPSQKKGCIDAIIPAYNEGPC LAQSLDNLLRNPYFCRVICVNDGSTDNTEAVMAEVKRKWGDRFVAVTQKNTGKGGALM NGLNYATCDQVFLSDADTYVPPDQDGMGYMLAEIERGADAVGGIPSTALKGAGLLPHI RATVKLPMIVMKRTLQQLLGGAPFIISGACGMFRTDVLRKFGFSDRTKVEDLDLTWTL VANGYRIRQANRCIVYPQECNSPREEWRRWRRWIVGYAVCMRLHKRLLFSRFGIFSIF PMLLVVLYGVGIYLTTWFNEFITTGPHGVVLAMFPLIWVGVVCVIGAFSAWFHRCWLL VPLAPLSVVYVLLAYAIWIIYGLIAFFTGREPQRDKPTRYSALVEASTAYSQPSVTGT EKLSEA" gene complement(384059..384616) /gene="yaiS" /locus_tag="b0364" /gene_synonym="ECK0361; JW0356" /db_xref="EcoGene:EG13302" /db_xref="GeneID:946967" CDS complement(384059..384616) /gene="yaiS" /locus_tag="b0364" /gene_synonym="ECK0361; JW0356" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative PIG-L family deacetylase" /protein_id="NP_414898.4" /db_xref="GI:90111121" /db_xref="ASAP:ABE-0001249" /db_xref="UniProtKB/Swiss-Prot:P71311" /db_xref="EcoGene:EG13302" /db_xref="GeneID:946967" /translation="MDKVLDSALLSSANKRKGILAIGAHPDDIELGCGASLARLAQKG IYIAAVVMTTGNSGTDGIIDRHEESRNALKILGCHQTIHLNFADTRAHLQLNDMISAL EDIIKNQIPSDVEIMRVYTMHDADRHQDHLAVYQASMVACRTIPQILGYETPSTWLSF MPQVFESVKEEYFTVKLAALKKHKS" gene 385232..386194 /gene="tauA" /locus_tag="b0365" /gene_synonym="ECK0362; JW0357; ssiA; yaiR" /db_xref="EcoGene:EG13300" /db_xref="GeneID:945030" CDS 385232..386194 /gene="tauA" /locus_tag="b0365" /gene_synonym="ECK0362; JW0357; ssiA; yaiR" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0009310 - amine catabolic process; GO:0006790 - sulfur metabolic process" /note="taurine transport system periplasmic protein" /codon_start=1 /transl_table=11 /product="taurine ABC transporter periplasmic binding protein" /protein_id="NP_414899.2" /db_xref="GI:90111122" /db_xref="ASAP:ABE-0001256" /db_xref="UniProtKB/Swiss-Prot:Q47537" /db_xref="EcoGene:EG13300" /db_xref="GeneID:945030" /translation="MAISSRNTLLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQADNT FAKESGATVDWRKFDSGASIVRALASGDVQIGNLGSSPLAVAASQQVPIEVFLLASKL GNSEALVVKKTISKPEDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPPA IIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHP EVVKAFAKSAIDAQQPYIANPDVWLKQPENISKLARLSGVPEGDVPGLVKGNTYLTPQ QQTAELTGPVNKAIIDTAQFLKEQGKVPAVANDYSQYVTSRFVQ" gene 386207..386974 /gene="tauB" /locus_tag="b0366" /gene_synonym="ECK0363; JW0358; ssiB; yaiQ" /db_xref="EcoGene:EG13299" /db_xref="GeneID:945027" CDS 386207..386974 /gene="tauB" /locus_tag="b0366" /gene_synonym="ECK0363; JW0358; ssiB; yaiQ" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009310 - amine catabolic process; GO:0006790 - sulfur metabolic process" /note="taurine ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="taurine ABC transporter ATPase" /protein_id="NP_414900.1" /db_xref="GI:16128351" /db_xref="ASAP:ABE-0001259" /db_xref="UniProtKB/Swiss-Prot:Q47538" /db_xref="EcoGene:EG13299" /db_xref="GeneID:945027" /translation="MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLL NLIAGFVPYQHGSIQLAGKRIEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGIEK MQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD AFTRDQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSSGPGRVLERLPLNFA RRFVAGESSRSIKSDPQFIAMREYVLSRVFEQREAFS" gene 386971..387798 /gene="tauC" /locus_tag="b0367" /gene_synonym="ECK0364; JW0359; ssiC; yaiJ" /db_xref="EcoGene:EG13301" /db_xref="GeneID:945026" CDS 386971..387798 /gene="tauC" /locus_tag="b0367" /gene_synonym="ECK0364; JW0359; ssiC; yaiJ" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009310 - amine catabolic process; GO:0006790 - sulfur metabolic process" /note="taurine transport system permease protein" /codon_start=1 /transl_table=11 /product="taurine ABC transporter permease" /protein_id="NP_414901.1" /db_xref="GI:16128352" /db_xref="ASAP:ABE-0001261" /db_xref="UniProtKB/Swiss-Prot:Q47539" /db_xref="EcoGene:EG13301" /db_xref="GeneID:945026" /translation="MSVLINEKLHSRRLKWRWPLSRQVTLSIGTLAVLLTVWWTVATL QLISPLFLPPPQQVLEKLLTIAGPQGFMDATLWQHLAASLTRIMLALFAAVLFGIPVG IAMGLSPTVRGILDPIIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMS ALAGVKSVQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAE LIAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRLTPWHGEVQ" gene 387795..388646 /gene="tauD" /locus_tag="b0368" /gene_synonym="ECK0365; JW0360; ssiD; yaiG" /db_xref="EcoGene:EG12423" /db_xref="GeneID:945021" CDS 387795..388646 /gene="tauD" /locus_tag="b0368" /gene_synonym="ECK0365; JW0360; ssiD; yaiG" /EC_number="1.14.11.17" /function="putative enzyme; Not classified" /GO_process="GO:0009310 - amine catabolic process; GO:0006790 - sulfur metabolic process" /codon_start=1 /transl_table=11 /product="taurine dioxygenase, 2-oxoglutarate-dependent" /protein_id="NP_414902.1" /db_xref="GI:16128353" /db_xref="ASAP:ABE-0001263" /db_xref="UniProtKB/Swiss-Prot:P37610" /db_xref="EcoGene:EG12423" /db_xref="GeneID:945021" /translation="MSERLSITPLGPYIGAQISGADLTRPLSDNQFEQLYHAVLRHQV VFLRDQAITPQQQRALAQRFGELHIHPVYPHAEGVDEIIVLDTHNDNPPDNDNWHTDV TFIETPPAGAILAAKELPSTGGDTLWTSGIAAYEALSVPFRQLLSGLRAEHDFRKSFP EYKYRKTEEEHQRWREAVAKNPPLLHPVVRTHPVSGKQALFVNEGFTTRIVDVSEKES EALLSFLFAHITKPEFQVRWRWQPNDIAIWDNRVTQHYANADYLPQRRIMHRATILGD KPFYRAG" gene complement(388753..389727) /gene="hemB" /locus_tag="b0369" /gene_synonym="ECK0366; JW0361; ncf" /db_xref="EcoGene:EG10428" /db_xref="GeneID:945017" CDS complement(388753..389727) /gene="hemB" /locus_tag="b0369" /gene_synonym="ECK0366; JW0361; ncf" /EC_number="4.2.1.24" /function="enzyme; Biosynthesis of cofactors, carriers: Heme, porphyrin" /note="5-aminolevulinate dehydratase = porphobilinogen synthase" /codon_start=1 /transl_table=11 /product="5-aminolevulinate dehydratase (porphobilinogen synthase)" /protein_id="NP_414903.4" /db_xref="GI:90111123" /db_xref="ASAP:ABE-0001266" /db_xref="UniProtKB/Swiss-Prot:P0ACB2" /db_xref="EcoGene:EG10428" /db_xref="GeneID:945017" /translation="MTDLIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDY KAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDGLVARM SRICKQTVPEMIVMSDTCFCEYTSHGHCGVLCEHGVDNDATLENLGKQAVVAAAAGAD FIAPSAAMDGQVQAIRQALDAAGFKDTAIMSYSTKFASSFYGPFREAAGSALKGDRKS YQMNPMNRREAIRESLLDEAQGADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEY AMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYFALDLAEKKILR" gene join(390251..391708,392970..394418) /gene="yaiT" /locus_tag="b4580" /gene_synonym="ECK0368; JW0362; yaiU" /pseudo /db_xref="EcoGene:EG13605" /db_xref="GeneID:4056040" CDS join(390251..391708,392970..394418) /gene="yaiT" /locus_tag="b4580" /gene_synonym="ECK0368; JW0362; yaiU" /note="pseudogene, autotransporter family;putative structure; Not classified; interrupted by IS3; putative flagellin structural protein" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0001274" /db_xref="ASAP:ABE-0001288" /db_xref="ASAP:ABE-0285112" /db_xref="UniProtKB/Swiss-Prot:P77199" /db_xref="EcoGene:EG13605" /db_xref="GeneID:4056040" mobile_element complement(391709..392966) /mobile_element_type="insertion sequence:IS3B" gene complement(391739..392605) /gene="insF1" /locus_tag="b0372" /gene_synonym="ECK0299" /db_xref="EcoGene:EG40006" /db_xref="GeneID:945036" CDS complement(391739..392605) /gene="insF1" /locus_tag="b0372" /gene_synonym="ECK0299" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS3 transposase B" /protein_id="NP_414906.1" /db_xref="GI:16128357" /db_xref="ASAP:ABE-0001277" /db_xref="UniProtKB/Swiss-Prot:P0CF80" /db_xref="EcoGene:EG40006" /db_xref="GeneID:945036" /translation="MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQ FRQHCDSVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKF SPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVI GWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSM SAKGCCYDNACVESFFHSLKVECIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGG LSPEQFENKNLA" gene complement(392602..392901) /gene="insE1" /locus_tag="b0373" /gene_synonym="ECK0298" /db_xref="EcoGene:EG40005" /db_xref="GeneID:946900" CDS complement(392602..392901) /gene="insE1" /locus_tag="b0373" /gene_synonym="ECK0298" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS3 transposase A" /protein_id="NP_414907.2" /db_xref="GI:226524701" /db_xref="ASAP:ABE-0001279" /db_xref="UniProtKB/Swiss-Prot:P0CF67" /db_xref="EcoGene:EG40005" /db_xref="GeneID:946900" /translation="MTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYES QLYNWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATYFAKRLK" gene 394506..395129 /gene="yaiV" /locus_tag="b0375" /gene_synonym="ECK0370; JW0366" /db_xref="EcoGene:EG13607" /db_xref="GeneID:946902" CDS 394506..395129 /gene="yaiV" /locus_tag="b0375" /gene_synonym="ECK0370; JW0366" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_414909.2" /db_xref="GI:226524702" /db_xref="ASAP:ABE-0001290" /db_xref="UniProtKB/Swiss-Prot:P0AAP5" /db_xref="EcoGene:EG13607" /db_xref="GeneID:946902" /translation="MLSVVKPLQEFGKLDKCLSRYGTRFEFNNEKQVIFSSDVNNEDT FVILEGVISLRREENVLIGITQAPYIMGLADGLMKNDIPYKLISEGNCTGYHLPAKQT ITLIEQNQLWRDAFYWLAWQNRILELRDVQLIGHNSYEQIRATLLSMIDWNEELRSRI GVMNYIHQRTRISRSVVAEVLAALRKGGYIEMNKGKLVAINRLPSEY" gene complement(395130..396287) /gene="ampH" /locus_tag="b0376" /gene_synonym="ECK0371; JW5052; yaiH" /db_xref="EcoGene:EG12867" /db_xref="GeneID:946904" CDS complement(395130..396287) /gene="ampH" /locus_tag="b0376" /gene_synonym="ECK0371; JW5052; yaiH" /EC_number="3.4.17.8" /EC_number="3.5.2.6" /function="enzyme; Murein recycling" /GO_process="GO:0042493 - response to drug" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine- carboxypeptidase/endopeptidase; penicillin-binding protein; weak beta-lactamase" /protein_id="NP_414910.1" /db_xref="GI:16128361" /db_xref="ASAP:ABE-0001292" /db_xref="UniProtKB/Swiss-Prot:P0AD70" /db_xref="EcoGene:EG12867" /db_xref="GeneID:946904" /translation="MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFY GSGATGMALVVIDGNQRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLD QGTVKLNDPLSKYAPPGARVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPT REQRWKYLSTAKLKAAPGSQAAYSNLAFDLLADALANASGKPYTQLFEEQITRPLGMK DTTYTPSPDQCRRLMVAERGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQR SNQADRMQTLIYQRAQFTKVIGMDVPGKADALGLGWVYMAPKEGRPGIIQKTGGGGGF ITYMAMIPQKNIGAFVVVTRSPLTRFKNMSDGINDLVTELSGNKPLVIPAS" gene 396639..397859 /gene="sbmA" /locus_tag="b0377" /gene_synonym="ECK0372; JW0368" /db_xref="EcoGene:EG10928" /db_xref="GeneID:946884" CDS 396639..397859 /gene="sbmA" /locus_tag="b0377" /gene_synonym="ECK0372; JW0368" /function="putative membrane; Drug/analog sensitivity" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042493 - response to drug" /note="sensitivity to microcin B17, possibly envelop protein" /codon_start=1 /transl_table=11 /product="peptide antibiotic transporter" /protein_id="NP_414911.1" /db_xref="GI:16128362" /db_xref="ASAP:ABE-0001297" /db_xref="UniProtKB/Swiss-Prot:P0AFY6" /db_xref="EcoGene:EG10928" /db_xref="GeneID:946884" /translation="MFKSFFPKPGTFFLSAFVWALIAVIFWQAGGGDWVARITGASGQ IPISAARFWSLDFLIFYAYYIVCVGLFALFWFIYSPHRWQYWSILGTALIIFVTWFLV EVGVAVNAWYAPFYDLIQTALSSPHKVTIEQFYREVGVFLGIALIAVVISVLNNFFVS HYVFRWRTAMNEYYMANWQQLRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLIA FLPVLVTLSAHVPELPIIGHIPYGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVE AAYRKELVYGEDDATRATPPTVRELFSAVRKNYFRLYFHYMYFNIARILYLQVDNVFG LFLLFPSIVAGTITLGLMTQITNVFGQVRGAFQYLINSWTTLVELMSIYKRLRSFEHE LDGDKIQEVTHTLS" gene 397872..398966 /gene="yaiW" /locus_tag="b0378" /gene_synonym="ECK0373; JW0369" /db_xref="EcoGene:EG13608" /db_xref="GeneID:945038" CDS 397872..398966 /gene="yaiW" /locus_tag="b0378" /gene_synonym="ECK0373; JW0369" /codon_start=1 /transl_table=11 /product="microcin Bac7 uptake protein; outer membrane surface-exposed lipoprotein" /protein_id="NP_414912.1" /db_xref="GI:16128363" /db_xref="ASAP:ABE-0001299" /db_xref="UniProtKB/Swiss-Prot:P77562" /db_xref="EcoGene:EG13608" /db_xref="GeneID:945038" /translation="MSRVNPLSSLSLLAVLVLAGCSSQAPQPLKKGEKAIDVASVVRQ KMPASVKDRDAWAKDLATTFESQGLAPTLENVCSVLAVAQQESNYQADPAVPGLSKIA WQEIDRRAERMHIPAFLVHTALKIKSPNGKSYSERLDSVRTEKQLSAIFDDLINMVPM GQTLFGSLNPVRTGGPMQVSIAFAEQHTKGYPWKMDGTVRQEVFSRRGGLWFGTYHLL NYPASYSAPIYRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYDSKEPGKTE LATRKLAAKLGMSDSEIRRQLEKGDSFSFEETALYKKVYQLAETKTGKSLPREMLPGI QLESPKITRNLTTAWFAKRVDERRARCMKQ" repeat_region 398980..399014 /note="REP33 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(399025..399333) /gene="yaiY" /locus_tag="b0379" /gene_synonym="ECK0374; JW0370" /db_xref="EcoGene:EG14279" /db_xref="GeneID:945223" CDS complement(399025..399333) /gene="yaiY" /locus_tag="b0379" /gene_synonym="ECK0374; JW0370" /codon_start=1 /transl_table=11 /product="DUF2755 family inner membrane protein" /protein_id="NP_414913.1" /db_xref="GI:16128364" /db_xref="ASAP:ABE-0001302" /db_xref="UniProtKB/Swiss-Prot:P0AAP7" /db_xref="EcoGene:EG14279" /db_xref="GeneID:945223" /translation="MADFTLSKSLFSGKYRNASSTPGNIAYALFVLFCFWAGAQLLNL LVHAPGVYERLMQVQETGRPRVEIGLGVGTIFGLIPFLVGCLIFAVVALWLHWRHRRQ " gene 399593..399805 /gene="yaiZ" /locus_tag="b0380" /gene_synonym="ECK0375; JW5053" /db_xref="EcoGene:EG14280" /db_xref="GeneID:947355" CDS 399593..399805 /gene="yaiZ" /locus_tag="b0380" /gene_synonym="ECK0375; JW5053" /codon_start=1 /transl_table=11 /product="DUF2754 family putative inner membrane protein" /protein_id="NP_414914.2" /db_xref="GI:90111125" /db_xref="ASAP:ABE-0001307" /db_xref="UniProtKB/Swiss-Prot:P0AAQ0" /db_xref="EcoGene:EG14280" /db_xref="GeneID:947355" /translation="MNLPVKIRRDWHYYAFAIGLIFILNGVVGLLGFEAKGWQTYAVG LVTWVISFWLAGLIIRRRDEETENAQ" gene complement(399829..400923) /gene="ddlA" /locus_tag="b0381" /gene_synonym="ECK0376; JW0372" /db_xref="EcoGene:EG10213" /db_xref="GeneID:945313" CDS complement(399829..400923) /gene="ddlA" /locus_tag="b0381" /gene_synonym="ECK0376; JW0372" /EC_number="6.3.2.4" /function="enzyme; Murein sacculus, peptidoglycan" /experiment="N-terminus verified by Edman degradation: PMID 1993184" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /codon_start=1 /transl_table=11 /product="D-alanine-D-alanine ligase A" /protein_id="NP_414915.1" /db_xref="GI:16128366" /db_xref="ASAP:ABE-0001309" /db_xref="UniProtKB/Swiss-Prot:P0A6J8" /db_xref="EcoGene:EG10213" /db_xref="GeneID:945313" /translation="MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGID KQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVI FPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFIT LTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKV IVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAP EINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQA SGLGYTDLITRLIELALERHAADNALKTTM" gene 401386..401646 /gene="iraP" /locus_tag="b0382" /gene_synonym="ECK0377; JW0373; yaiB" /db_xref="EcoGene:EG11256" /db_xref="GeneID:947709" CDS 401386..401646 /gene="iraP" /locus_tag="b0382" /gene_synonym="ECK0377; JW0373; yaiB" /codon_start=1 /transl_table=11 /product="anti-RssB factor, RpoS stabilzer during Pi starvation; anti-adapter protein" /protein_id="NP_414916.1" /db_xref="GI:16128367" /db_xref="ASAP:ABE-0001313" /db_xref="UniProtKB/Swiss-Prot:P0AAN9" /db_xref="EcoGene:EG11256" /db_xref="GeneID:947709" /translation="MKNLIAELLFKLAQKEEESKELCAQVEALEIIVTAMLRNMAQND QQRLIDQVEGALYEVKPDASIPDDDTELLRDYVKKLLKHPRQ" gene 401747..403162 /gene="phoA" /locus_tag="b0383" /gene_synonym="ECK0378; JW0374; psiA" /db_xref="EcoGene:EG10727" /db_xref="GeneID:945041" CDS 401747..403162 /gene="phoA" /locus_tag="b0383" /gene_synonym="ECK0378; JW0374; psiA" /EC_number="3.1.3.1" /function="enzyme; Central intermediary metabolism: Phosphorus compounds" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006793 - phosphorus metabolic process" /note="alkaline phosphatase; start codon corrected" /codon_start=1 /transl_table=11 /product="bacterial alkaline phosphatase" /protein_id="NP_414917.2" /db_xref="GI:49176017" /db_xref="ASAP:ABE-0001328" /db_xref="UniProtKB/Swiss-Prot:P00634" /db_xref="EcoGene:EG10727" /db_xref="GeneID:945041" /translation="MKQSTIALALLPLLFTPVTKARTPEMPVLENRAAQGDITAPGGA RRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPL TGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKA AGLATGNVSTAELQDATPAALVAHVTSRKCYGPSATSEKCPGNALEKGGKGSITEQLL NARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKP LLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSK NEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADH AHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAAN VVGLTDQTDLFYTMKAALGLK" gene 403281..403601 /gene="psiF" /locus_tag="b0384" /gene_synonym="ECK0379; JW5054" /db_xref="EcoGene:EG11401" /db_xref="GeneID:945040" CDS 403281..403601 /gene="psiF" /locus_tag="b0384" /gene_synonym="ECK0379; JW5054" /function="phenotype; Central intermediary metabolism: Phosphorus compounds" /GO_process="GO:0006793 - phosphorus metabolic process; GO:0042594 - response to starvation" /note="induced by phosphate starvation" /codon_start=1 /transl_table=11 /product="PsiF family protein" /protein_id="NP_414918.4" /db_xref="GI:162135895" /db_xref="ASAP:ABE-0001330" /db_xref="UniProtKB/Swiss-Prot:P0AFM4" /db_xref="EcoGene:EG11401" /db_xref="GeneID:945040" /translation="MKITLLVTLLFGLVFLTTVGAAERTLTPQQQRMTSCNQQATAQA LKGDARKTYMSDCLKNSKSAPGEKSLTPQQQKMRECNNQATQQSLKGDDRNKFMSACL KKAA" gene 403703..404818 /gene="yaiC" /locus_tag="b0385" /gene_synonym="adrA; ECK0380; JW0376" /db_xref="EcoGene:EG11257" /db_xref="GeneID:945037" CDS 403703..404818 /gene="yaiC" /locus_tag="b0385" /gene_synonym="adrA; ECK0380; JW0376" /codon_start=1 /transl_table=11 /product="diguanylate cyclase, cellulose regualtor" /protein_id="NP_414919.1" /db_xref="GI:16128370" /db_xref="ASAP:ABE-0001336" /db_xref="UniProtKB/Swiss-Prot:P0AAP1" /db_xref="EcoGene:EG11257" /db_xref="GeneID:945037" /translation="MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLP RAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNL KTDAVLAGMWVGVMGVNVLPSTAMLMIMCLNLMGAGGPRLFVAGLVLMVVSCLVTLEL TGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGV YNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQ ITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVHEGLNTLRLPNTPQVTLRISVG VAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA" gene complement(404835..405644) /gene="proC" /locus_tag="b0386" /gene_synonym="ECK0381; JW0377; pro; Pro2" /db_xref="EcoGene:EG10769" /db_xref="GeneID:945034" CDS complement(404835..405644) /gene="proC" /locus_tag="b0386" /gene_synonym="ECK0381; JW0377; pro; Pro2" /EC_number="1.5.1.2" /function="enzyme; Amino acid biosynthesis: Proline" /experiment="N-terminus verified by Edman degradation: PMID 6089111" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006561 - proline biosynthetic process" /note="pyrroline-5-carboxylate reductase" /codon_start=1 /transl_table=11 /product="pyrroline-5-carboxylate reductase, NAD(P)-binding" /protein_id="NP_414920.1" /db_xref="GI:16128371" /db_xref="ASAP:ABE-0001338" /db_xref="UniProtKB/Swiss-Prot:P0A9L8" /db_xref="EcoGene:EG10769" /db_xref="GeneID:945034" /translation="MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAA LHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTL DQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVI AEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLET GEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS" gene 405764..406222 /gene="yaiI" /locus_tag="b0387" /gene_synonym="ECK0382; JW0378" /db_xref="EcoGene:EG13176" /db_xref="GeneID:945033" CDS 405764..406222 /gene="yaiI" /locus_tag="b0387" /gene_synonym="ECK0382; JW0378" /codon_start=1 /transl_table=11 /product="UPF0178 family protein" /protein_id="NP_414921.2" /db_xref="GI:90111127" /db_xref="ASAP:ABE-0001344" /db_xref="UniProtKB/Swiss-Prot:P0A8D3" /db_xref="EcoGene:EG13176" /db_xref="GeneID:945033" /translation="MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRF IRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAALNPRGERYTPATI RERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG" gene 406405..406929 /gene="aroL" /locus_tag="b0388" /gene_synonym="ECK0383; JW0379" /db_xref="EcoGene:EG10082" /db_xref="GeneID:945031" CDS 406405..406929 /gene="aroL" /locus_tag="b0388" /gene_synonym="ECK0383; JW0379" /EC_number="2.7.1.71" /function="enzyme; Amino acid biosynthesis: Chorismate" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009423 - chorismate biosynthetic process" /codon_start=1 /transl_table=11 /product="shikimate kinase II" /protein_id="NP_414922.1" /db_xref="GI:16128373" /db_xref="ASAP:ABE-0001353" /db_xref="UniProtKB/Swiss-Prot:P0A6E1" /db_xref="EcoGene:EG10082" /db_xref="GeneID:945031" /translation="MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMT VAEIVEREEWAGFRARETAALEAVTAPSTVIATGGGIILTEFNRHFMQNNGIVVYLCA PVSVLVNRLQAAPEEDLRPTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQV ISEIRSALAQTINC" gene 406979..407170 /gene="yaiA" /locus_tag="b0389" /gene_synonym="ECK0384; JW0380" /db_xref="EcoGene:EG11093" /db_xref="GeneID:945043" CDS 406979..407170 /gene="yaiA" /locus_tag="b0389" /gene_synonym="ECK0384; JW0380" /codon_start=1 /transl_table=11 /product="OxyR-regulated conserved protein" /protein_id="NP_414923.1" /db_xref="GI:16128374" /db_xref="ASAP:ABE-0001355" /db_xref="UniProtKB/Swiss-Prot:P0AAN5" /db_xref="EcoGene:EG11093" /db_xref="GeneID:945043" /translation="MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEH PTAQEAMDAKKRYEDPDKE" gene 407428..408105 /gene="aroM" /locus_tag="b0390" /gene_synonym="ECK0385; JW0381" /db_xref="EcoGene:EG10083" /db_xref="GeneID:945045" CDS 407428..408105 /gene="aroM" /locus_tag="b0390" /gene_synonym="ECK0385; JW0381" /note="protein of aro operon, regulated by aroR" /codon_start=1 /transl_table=11 /product="AroM family protein" /protein_id="NP_414924.1" /db_xref="GI:16128375" /db_xref="ASAP:ABE-0001357" /db_xref="UniProtKB/Swiss-Prot:P0AE28" /db_xref="EcoGene:EG10083" /db_xref="GeneID:945045" /translation="MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREE VMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANI SSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSL GNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIAR LAAELLV" gene 408177..408461 /gene="yaiE" /locus_tag="b0391" /gene_synonym="ECK0386; JW0382" /db_xref="EcoGene:EG12159" /db_xref="GeneID:945048" CDS 408177..408461 /gene="yaiE" /locus_tag="b0391" /gene_synonym="ECK0386; JW0382" /codon_start=1 /transl_table=11 /product="UPF0345 family protein" /protein_id="NP_414925.1" /db_xref="GI:16128376" /db_xref="ASAP:ABE-0001360" /db_xref="UniProtKB/Swiss-Prot:P0C037" /db_xref="EcoGene:EG12159" /db_xref="GeneID:945048" /translation="MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEE MTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL" gene 408609..408950 /gene="ykiA" /locus_tag="b0392" /gene_synonym="ECK0387; JW0383" /pseudo /db_xref="EcoGene:EG14282" /db_xref="GeneID:945423" CDS 408609..408950 /gene="ykiA" /locus_tag="b0392" /gene_synonym="ECK0387; JW0383" /note="pseudogene" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0001363" /db_xref="UniProtKB/Swiss-Prot:P75704" /db_xref="EcoGene:EG14282" /db_xref="GeneID:945423" repeat_region 409052..409088 /note="REP34 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(409108..410019) /gene="rdgC" /locus_tag="b0393" /gene_synonym="ECK0388; JW0384; yaiD" /db_xref="EcoGene:EG12158" /db_xref="GeneID:948585" CDS complement(409108..410019) /gene="rdgC" /locus_tag="b0393" /gene_synonym="ECK0388; JW0384; yaiD" /experiment="N-terminus verified by Edman degradation: PMID 10368163" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication" /codon_start=1 /transl_table=11 /product="nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function" /protein_id="NP_414927.1" /db_xref="GI:16128378" /db_xref="ASAP:ABE-0001366" /db_xref="UniProtKB/Swiss-Prot:P36767" /db_xref="EcoGene:EG12158" /db_xref="GeneID:948585" /translation="MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMG WVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKT EKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGS LPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEE ITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFD ADFILMTGELAALIQNLIEGLGGEAQR" gene 410144..411052 /gene="mak" /locus_tag="b0394" /gene_synonym="ECK0389; JW0385; yajF" /db_xref="EcoGene:EG11288" /db_xref="GeneID:949086" CDS 410144..411052 /gene="mak" /locus_tag="b0394" /gene_synonym="ECK0389; JW0385; yajF" /EC_number="2.7.1.4" /function="putative regulator; Not classified" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="possible NAGC-like transcriptional regulator" /codon_start=1 /transl_table=11 /product="manno(fructo)kinase" /protein_id="NP_414928.2" /db_xref="GI:90111128" /db_xref="ASAP:ABE-0001372" /db_xref="UniProtKB/Swiss-Prot:P23917" /db_xref="EcoGene:EG11288" /db_xref="GeneID:949086" /translation="MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIA TLVDMAEQATGQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRL ANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHIGGNGTAGEWGHNPL PWMDEDELRYREEVPCYCGKQGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESD PVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGMSNVDRLYQTVGQLIKQFVFGGE CETPVRKAKHGDSSGVRGAAWLWPQE" repeat_region 411078..411268 /note="REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences" gene complement(411297..412481) /gene="araJ" /locus_tag="b0396" /gene_synonym="ECK0390; JW0386" /db_xref="EcoGene:EG10060" /db_xref="GeneID:949077" CDS complement(411297..412481) /gene="araJ" /locus_tag="b0396" /gene_synonym="ECK0390; JW0386" /function="transport; Degradation of small molecules: Carbon compounds" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="involved in either transport or processing of arabinose polymers" /codon_start=1 /transl_table=11 /product="L-arabinose-inducible putative transporter, MFS family" /protein_id="NP_414930.3" /db_xref="GI:49176018" /db_xref="ASAP:ABE-0001378" /db_xref="UniProtKB/Swiss-Prot:P23910" /db_xref="EcoGene:EG10060" /db_xref="GeneID:949077" /translation="MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMI SYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSG FPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTF LLIAVFNIAVMASVYFWVPDIRDEAKGNLREQFHFLRSPAPWLIFAATMFGNAGVFAW FSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIV LALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFN LGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKP LG" gene complement(412607..415753) /gene="sbcC" /locus_tag="b0397" /gene_synonym="ECK0391; JW0387; rmuA" /db_xref="EcoGene:EG10927" /db_xref="GeneID:949076" CDS complement(412607..415753) /gene="sbcC" /locus_tag="b0397" /gene_synonym="ECK0391; JW0387; rmuA" /function="enzyme; Degradation of DNA" /experiment="N-terminus verified by Edman degradation: PMID 9242643" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006308 - DNA catabolic process" /note="ATP-dependent dsDNA exonuclease" /codon_start=1 /transl_table=11 /product="exonuclease, dsDNA, ATP-dependent" /protein_id="NP_414931.1" /db_xref="GI:16128382" /db_xref="ASAP:ABE-0001381" /db_xref="UniProtKB/Swiss-Prot:P13458" /db_xref="EcoGene:EG10927" /db_xref="GeneID:949076" /translation="MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKT TLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRAR NQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAA FLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVTLLTPEQV QSLTASLQVLTDEEKQLITAQQQEQQSLNWLTRQDELQQEASRRQQALQQALAEEEKA QPQLAALSLAQPARNLRPHWERIAEHSAALAHIRQQIEEVNTRLQSTMALRASIRHHA AKQSAELQQQQQSLNTWLQEHDRFRQWNNEPAGWRAQFSQQTSDREHLRQWQQQLTHA EQKLNALAAITLTLTADEVATALAQHAEQRPLRQHLVALHGQIVPQQKRLAQLQVAIQ NVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPL CGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGATLRGQLDAITKQLQRDENE AQSLRQDEQALTQQWQAVTASLNITLQPLDDIQPWLDAQDEHERQLRLLSQRHELQGQ IAAHNQQIIQYQQQIEQRQQLLLTTLTGYALTLPQEDEEESWLATRQQEAQSWQQRQN ELTALQNRIQQLTPILETLPQSDELPHCEETVVLENWRQVHEQCLALHSQQQTLQQQD VLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQT LVTQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQD ADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQ LTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVS HKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKV KKINGLGYSKLESTFAVK" gene complement(415750..416952) /gene="sbcD" /locus_tag="b0398" /gene_synonym="ECK0392; JW0388; yajA" /db_xref="EcoGene:EG11094" /db_xref="GeneID:945049" CDS complement(415750..416952) /gene="sbcD" /locus_tag="b0398" /gene_synonym="ECK0392; JW0388; yajA" /function="enzyme; Degradation of DNA" /experiment="N-terminus verified by Edman degradation: PMID 9242643" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006308 - DNA catabolic process" /note="ATP-dependent dsDNA exonuclease" /codon_start=1 /transl_table=11 /product="exonuclease, dsDNA, ATP-dependent" /protein_id="NP_414932.1" /db_xref="GI:16128383" /db_xref="ASAP:ABE-0001383" /db_xref="UniProtKB/Swiss-Prot:P0AG76" /db_xref="EcoGene:EG11094" /db_xref="GeneID:945049" /translation="MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAII VAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNT TVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIITSQAGLNGIEKQQHLLAAITDY YQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYI ALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVT QPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVE VLLVRRSREQRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLH TLAGEHEA" gene 417142..417831 /gene="phoB" /locus_tag="b0399" /gene_synonym="ECK0393; JW0389; phoRc" /db_xref="EcoGene:EG10728" /db_xref="GeneID:945046" CDS 417142..417831 /gene="phoB" /locus_tag="b0399" /gene_synonym="ECK0393; JW0389; phoRc" /function="regulator; Global regulatory functions" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006793 - phosphorus metabolic process; GO:0006350 - transcription" /note="positive response regulator for pho regulon, sensor is PhoR (or CreC)" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with PhoR" /protein_id="NP_414933.1" /db_xref="GI:16128384" /db_xref="ASAP:ABE-0001389" /db_xref="UniProtKB/Swiss-Prot:P0AFJ5" /db_xref="EcoGene:EG10728" /db_xref="GeneID:945046" /translation="MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDY ITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEF KLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTV RGTGYRFSTRF" gene 417889..419184 /gene="phoR" /locus_tag="b0400" /gene_synonym="ECK0394; JW0390; nmpB; phoR1; R1pho" /db_xref="EcoGene:EG10733" /db_xref="GeneID:945044" CDS 417889..419184 /gene="phoR" /locus_tag="b0400" /gene_synonym="ECK0394; JW0390; nmpB; phoR1; R1pho" /EC_number="2.7.3.-" /function="enzyme; Global regulatory functions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006793 - phosphorus metabolic process; GO:0006464 - protein modification process" /note="positive and negative sensor protein for pho regulon" /codon_start=1 /transl_table=11 /product="sensory histidine kinase in two-component regulatory system with PhoB" /protein_id="NP_414934.1" /db_xref="GI:16128385" /db_xref="ASAP:ABE-0001391" /db_xref="UniProtKB/Swiss-Prot:P08400" /db_xref="EcoGene:EG10733" /db_xref="GeneID:945044" /translation="MLERLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLI WHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRS GAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRD FSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTP LTVLQGYLEMMNEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNE KVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTP EGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLA IVKHAVNHHESRLNIESTVGKGTRFSFVIPERLIAKNSD" gene 419591..420910 /gene="brnQ" /locus_tag="b0401" /gene_synonym="ECK0395; hrbA; JW0391" /db_xref="EcoGene:EG12168" /db_xref="GeneID:945042" CDS 419591..420910 /gene="brnQ" /locus_tag="b0401" /gene_synonym="ECK0395; hrbA; JW0391" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009063 - cellular amino acid catabolic process; GO:0009098 - leucine biosynthetic process" /note="branched chain amino acid transport system II carrier protein" /codon_start=1 /transl_table=11 /product="branched-chain amino acid transport system 2 carrier protein; LIV-II transport system for Ile, Leu, and Val" /protein_id="NP_414935.1" /db_xref="GI:16128386" /db_xref="ASAP:ABE-0001394" /db_xref="UniProtKB/Swiss-Prot:P0AD99" /db_xref="EcoGene:EG12168" /db_xref="GeneID:945042" /translation="MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTA AFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRT ATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALV ILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGV TEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFG GGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLS QLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAF SDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH" gene 420986..422359 /gene="proY" /locus_tag="b0402" /gene_synonym="ECK0396; hisY; JW5055; yajM" /db_xref="EcoGene:EG13609" /db_xref="GeneID:945050" CDS 420986..422359 /gene="proY" /locus_tag="b0402" /gene_synonym="ECK0396; hisY; JW5055; yajM" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006526 - arginine biosynthetic process; GO:0009063 - cellular amino acid catabolic process" /note="proline permease transport protein" /codon_start=1 /transl_table=11 /product="proline-specific permease" /protein_id="NP_414936.1" /db_xref="GI:16128387" /db_xref="ASAP:ABE-0001398" /db_xref="UniProtKB/Swiss-Prot:P0AAE2" /db_xref="EcoGene:EG13609" /db_xref="GeneID:945050" /translation="MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSV LLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIV AIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATI IIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEII GITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQH MGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVT VLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVK ALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHD RQLAENQ" repeat_region 422372..422404 /note="REP36 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 422518..424332 /gene="malZ" /locus_tag="b0403" /gene_synonym="ECK0397; JW0393" /db_xref="EcoGene:EG10565" /db_xref="GeneID:949131" CDS 422518..424332 /gene="malZ" /locus_tag="b0403" /gene_synonym="ECK0397; JW0393" /EC_number="3.2.1.20" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0000272 - polysaccharide catabolic process" /codon_start=1 /transl_table=11 /product="maltodextrin glucosidase" /protein_id="NP_414937.2" /db_xref="GI:345452716" /db_xref="ASAP:ABE-0001402" /db_xref="UniProtKB/Swiss-Prot:P21517" /db_xref="EcoGene:EG10565" /db_xref="GeneID:949131" /translation="MLNAWHLPVPPFVKQSKDQLLITLWLTGEDPPQRIMLRTEHDNE EMSVPMHKQRSQPQPGVTAWRAAIDLSSGQPRRRYSFKLLWHDRQRWFTPQGFSRMPP ARLEQFAVDVPDIGPQWAADQIFYQIFPDRFARSLPREAEQDHVYYHHAAGQEIILRD WDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPVFKAPSVHKYDTEDYRH VDPQFGGDGALLRLRHNTQQLGMRLVLDGVFNHSGDSHAWFDRHNRGTGGACHNPESP WRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLKAPWNMDGWR LDVVHMLGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDARQWLQADVEDAAMN YRGFTFPLWGFLANTDISYDPQQIDAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDTA RFKTLLGRDIARLPLAVVWLFTWPGVPCIYYGDEVGLDGKNDPFCRKPFPWQVEKQDT ALFALYQRMIALRKKSQALRHGGCQVLYAEDNVVVFVRVLNQQRVLVAINRGEACEVV LPASPFLNAVQWQCKEGHGQLTDGILALPAISATVWMN" gene complement(424337..424918) /gene="acpH" /locus_tag="b0404" /gene_synonym="acpD; ECK0398; JW0394; yajB" /db_xref="EcoGene:EG11095" /db_xref="GeneID:949132" CDS complement(424337..424918) /gene="acpH" /locus_tag="b0404" /gene_synonym="acpD; ECK0398; JW0394; yajB" /function="enzyme; Not classified" /note="putative glycoprotein" /codon_start=1 /transl_table=11 /product="acyl carrier protein (ACP) phosphodiesterase; ACP hydrolyase" /protein_id="NP_414938.1" /db_xref="GI:16128389" /db_xref="ASAP:ABE-0001404" /db_xref="UniProtKB/Swiss-Prot:P21515" /db_xref="EcoGene:EG11095" /db_xref="GeneID:949132" /translation="MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHM HRRIDVLTDNLPEVREAREWFRSETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFV CYAREQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALR DSWYDLDAHYDALETRFWQFYPRMMAQASRKAL" gene 425011..426081 /gene="queA" /locus_tag="b0405" /gene_synonym="ECK0399; JW0395" /db_xref="EcoGene:EG10812" /db_xref="GeneID:944905" CDS 425011..426081 /gene="queA" /locus_tag="b0405" /gene_synonym="ECK0399; JW0395" /EC_number="5.-.-.-" /function="enzyme; Queuosine biosynthesis" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /note="synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine:tRNA ribosyltransferase-isomerase" /protein_id="NP_414939.1" /db_xref="GI:16128390" /db_xref="ASAP:ABE-0001411" /db_xref="UniProtKB/Swiss-Prot:P0A7F9" /db_xref="EcoGene:EG10812" /db_xref="GeneID:944905" /translation="MRVTDFSFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFT DLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPK PGAELLLGDDESINATMTARHGALFEVEFNDERSVLDILNSIGHMPLPPYIDRPDEDA DRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVD TIEDHIMHSEYAEVPQDVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPF FDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRF FSYGDAMFITYNPQAINERVGE" gene 426137..427264 /gene="tgt" /locus_tag="b0406" /gene_synonym="ECK0400; JW0396; vacC" /db_xref="EcoGene:EG10996" /db_xref="GeneID:949130" CDS 426137..427264 /gene="tgt" /locus_tag="b0406" /gene_synonym="ECK0400; JW0396; vacC" /EC_number="2.4.2.29" /function="enzyme; tRNA modification" /experiment="N-terminus verified by Edman degradation: PMID 8323579" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="tRNA-guanine transglycosylase" /protein_id="NP_414940.1" /db_xref="GI:16128391" /db_xref="ASAP:ABE-0001413" /db_xref="UniProtKB/Swiss-Prot:P0A847" /db_xref="EcoGene:EG10996" /db_xref="GeneID:949130" /translation="MKFELDTTDGRARRGRLVFDRGVVETPCFMPVGTYGTVKGMTPE EVEATGAQIILGNTFHLWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIR KITEQGVHFRNPINGDPIFLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSME MSLRWAKRSRERFDSLGNKNALFGIIQGSVYEDLRDISVKGLVDIGFDGYAVGGLAVG EPKADMHRILEHVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGH LFVTDGVVKIRNAKYKSDTGPLDPECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHN LRYYQRLMAGLRKAIEEGKLESFVTDFYQRQGREVPPLNVD" gene 427287..427619 /gene="yajC" /locus_tag="b0407" /gene_synonym="ECK0401; JW0397" /db_xref="EcoGene:EG11096" /db_xref="GeneID:945374" CDS 427287..427619 /gene="yajC" /locus_tag="b0407" /gene_synonym="ECK0401; JW0397" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="SecYEG protein translocase auxillary subunit" /protein_id="NP_414941.1" /db_xref="GI:16128392" /db_xref="ASAP:ABE-0001415" /db_xref="UniProtKB/Swiss-Prot:P0ADZ7" /db_xref="EcoGene:EG11096" /db_xref="GeneID:945374" /translation="MSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQK RTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAENGYIAIALNDTTEVVIKRDFVAAVL PKGTMKAL" gene 427647..429494 /gene="secD" /locus_tag="b0408" /gene_synonym="ECK0402; JW0398" /db_xref="EcoGene:EG10938" /db_xref="GeneID:949133" CDS 427647..429494 /gene="secD" /locus_tag="b0408" /gene_synonym="ECK0402; JW0398" /function="transport; Protein, peptide secretion" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="protein secretion; membrane protein, part of the channel" /codon_start=1 /transl_table=11 /product="SecYEG protein translocase auxillary subunit" /protein_id="NP_414942.1" /db_xref="GI:16128393" /db_xref="ASAP:ABE-0001417" /db_xref="UniProtKB/Swiss-Prot:P0AG90" /db_xref="EcoGene:EG10938" /db_xref="GeneID:949133" /translation="MLNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVA ASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDSTDTQLRAREALMGVMGDKYVVA LNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLRE KGIPYTTVRKENNYGLSITFRDAKARDEAIAYLSKRHPDLVISSQGSNQLRAVMSDAR LSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGAT ATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQD EYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEV INIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNI EQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIA GIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVII LYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI" gene 429505..430476 /gene="secF" /locus_tag="b0409" /gene_synonym="ECK0403; JW0399" /db_xref="EcoGene:EG10940" /db_xref="GeneID:949120" CDS 429505..430476 /gene="secF" /locus_tag="b0409" /gene_synonym="ECK0403; JW0399" /function="transport; Protein, peptide secretion" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="protein secretion, membrane protein" /codon_start=1 /transl_table=11 /product="SecYEG protein translocase auxillary subunit" /protein_id="NP_414943.1" /db_xref="GI:16128394" /db_xref="ASAP:ABE-0001419" /db_xref="UniProtKB/Swiss-Prot:P0AG93" /db_xref="EcoGene:EG10940" /db_xref="GeneID:949120" /translation="MAQEYTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVR GFNWGLDFTGGTVIEITLEKPAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAE GETGGQVLGSQVLKVINESTNQNAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVY VGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVS DRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLMVILMLYLFGGPVLEGFSLT MLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPSILP" gene 430605..430952 /gene="yajD" /locus_tag="b0410" /gene_synonym="ECK0404; JW0400" /db_xref="EcoGene:EG11097" /db_xref="GeneID:945051" CDS 430605..430952 /gene="yajD" /locus_tag="b0410" /gene_synonym="ECK0404; JW0400" /codon_start=1 /transl_table=11 /product="HNH nuclease family protein" /protein_id="NP_414944.1" /db_xref="GI:16128395" /db_xref="ASAP:ABE-0001422" /db_xref="UniProtKB/Swiss-Prot:P0AAQ2" /db_xref="EcoGene:EG11097" /db_xref="GeneID:945051" /translation="MAIIPKNYARLESGYREKALKIYPWVCGRCSREFVYSNLRELTV HHIDHDHTNNPEDGSNWELLCLYCHDHEHSKYTEADQYGTTVIAGEDAQKDVGEAKYN PFADLKAMMNKKK" repeat_region 430968..431065 /note="REP37 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(431129..432013) /gene="tsx" /locus_tag="b0411" /gene_synonym="ECK0405; JW0401; nupA; T6rec" /db_xref="EcoGene:EG11035" /db_xref="GeneID:946242" CDS complement(431129..432013) /gene="tsx" /locus_tag="b0411" /gene_synonym="ECK0405; JW0401; nupA; T6rec" /function="transport; Transport of small molecules: Nucleosides, purines, pyrimidines" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /note="nucleoside channel; receptor of phage T6 and colicin K" /codon_start=1 /transl_table=11 /product="nucleoside channel, receptor of phage T6 and colicin K" /protein_id="NP_414945.1" /db_xref="GI:16128396" /db_xref="ASAP:ABE-0001425" /db_xref="UniProtKB/Swiss-Prot:P0A927" /db_xref="EcoGene:EG11035" /db_xref="GeneID:946242" /translation="MKKTLLAAGAVLALSSSFTVNAAENDKPQYLSDWWHQSVNVVGS YHTRFGPQIRNDTYLEYEAFAKKDWFDFYGYADAPVFFGGNSDAKGIWNHGSPLFMEI EPRFSIDKLTNTDLSFGPFKEWYFANNYIYDMGRNKDGRQSTWYMGLGTDIDTGLPMS LSMNVYAKYQWQNYGAANENEWDGYRFKIKYFVPITDLWGGQLSYIGFTNFDWGSDLG DDSGNAINGIKTRTNNSIASSHILALNYDHWHYSVVARYWHDGGQWNDDAELNFGNGN FNVRSTGWGGYLVVGYNF" gene complement(432312..432851) /gene="yajI" /locus_tag="b0412" /gene_synonym="ECK0406; JW5056" /db_xref="EcoGene:EG12874" /db_xref="GeneID:947233" CDS complement(432312..432851) /gene="yajI" /locus_tag="b0412" /gene_synonym="ECK0406; JW5056" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="NP_414946.4" /db_xref="GI:90111129" /db_xref="ASAP:ABE-0001433" /db_xref="UniProtKB/Swiss-Prot:P46122" /db_xref="EcoGene:EG12874" /db_xref="GeneID:947233" /translation="MNTNVFRLLLLGSLFSLSACVQQSEVRQMKHSVSTLNQEMTQLN QETVKITQQNRLNAKSSSGVYLLPGAKTPARLESQIGTLRMSLVNITPDADGTTLTLR IQGESNDPLPAFSGTVEYGQIQGTIDNFQEINVQNQLINAPASVLAPSDVDIPLQLKG ISVDQLGFVRIHDIQPVMQ" gene 433002..433451 /gene="nrdR" /locus_tag="b0413" /gene_synonym="ECK0407; JW0403; ribX; ybaD" /db_xref="EcoGene:EG11320" /db_xref="GeneID:947437" CDS 433002..433451 /gene="nrdR" /locus_tag="b0413" /gene_synonym="ECK0407; JW0403; ribX; ybaD" /codon_start=1 /transl_table=11 /product="Nrd regulon repressor" /protein_id="NP_414947.1" /db_xref="GI:16128398" /db_xref="ASAP:ABE-0001437" /db_xref="UniProtKB/Swiss-Prot:P0A8D0" /db_xref="EcoGene:EG11320" /db_xref="GeneID:947437" /translation="MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVA ELVMPRVVKSNDVREPFNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGERE VPSKMIGNLVMEQLKKLDKVAYIRFASVYRSFEDIKEFGEEIARLED" gene 433455..434558 /gene="ribD" /locus_tag="b0414" /gene_synonym="ECK0408; JW0404; ribG; ybaE" /db_xref="EcoGene:EG11321" /db_xref="GeneID:945620" CDS 433455..434558 /gene="ribD" /locus_tag="b0414" /gene_synonym="ECK0408; JW0404; ribG; ybaE" /EC_number="1.1.1.193" /EC_number="3.5.4.26" /function="enzyme; Biosynthesis of cofactors, carriers: Riboflavin" /codon_start=1 /transl_table=11 /product="fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase" /protein_id="NP_414948.1" /db_xref="GI:16128399" /db_xref="ASAP:ABE-0001441" /db_xref="UniProtKB/Swiss-Prot:P25539" /db_xref="EcoGene:EG11321" /db_xref="GeneID:945620" /translation="MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQ RAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQD PNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGR TAMASGESQWITSPQARRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQAL YPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHK GHLDLVVLMMQLGKQQINSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLC TLPGLEKLADAPQFKFKEIRHVGPDVCLHLVGA" gene 434647..435117 /gene="ribE" /locus_tag="b0415" /gene_synonym="ECK0409; JW0405; ribH; ybaF" /db_xref="EcoGene:EG11322" /db_xref="GeneID:946453" CDS 434647..435117 /gene="ribE" /locus_tag="b0415" /gene_synonym="ECK0409; JW0405; ribH; ybaF" /EC_number="2.5.1.9" /function="enzyme; Biosynthesis of cofactors, carriers: Riboflavin" /note="riboflavin synthase, beta chain" /codon_start=1 /transl_table=11 /product="riboflavin synthase beta chain" /protein_id="NP_414949.1" /db_xref="GI:16128400" /db_xref="ASAP:ABE-0001444" /db_xref="UniProtKB/Swiss-Prot:P61714" /db_xref="EcoGene:EG11322" /db_xref="GeneID:946453" /translation="MNIIEANVATPDARVAITIARFNNFINDSLLEGAIDALKRIGQV KDENITVVWVPGAYELPLAAGALAKTGKYDAVIALGTVIRGGTAHFEYVAGGASNGLA HVAQDSEIPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA" gene 435137..435556 /gene="nusB" /locus_tag="b0416" /gene_synonym="ECK0410; groNB; JW0406; ssaD; ssyB" /db_xref="EcoGene:EG10666" /db_xref="GeneID:945054" CDS 435137..435556 /gene="nusB" /locus_tag="b0416" /gene_synonym="ECK0410; groNB; JW0406; ssaD; ssyB" /function="factor; RNA synthesis, modification, DNA transcription" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006350 - transcription" /note="transcription termination; L factor" /codon_start=1 /transl_table=11 /product="transcription antitermination protein" /protein_id="NP_414950.1" /db_xref="GI:16128401" /db_xref="ASAP:ABE-0001447" /db_xref="UniProtKB/Swiss-Prot:P0A780" /db_xref="EcoGene:EG10666" /db_xref="GeneID:945054" /translation="MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD VLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKV AINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK" gene 435634..436611 /gene="thiL" /locus_tag="b0417" /gene_synonym="ECK0411; JW0407" /db_xref="EcoGene:EG20227" /db_xref="GeneID:947387" CDS 435634..436611 /gene="thiL" /locus_tag="b0417" /gene_synonym="ECK0411; JW0407" /EC_number="2.7.4.16" /function="enzyme; Biosynthesis of cofactors, carriers: Thiamine" /GO_process="GO:0009228 - thiamin biosynthetic process" /codon_start=1 /transl_table=11 /product="thiamine monophosphate kinase" /protein_id="NP_414951.1" /db_xref="GI:16128402" /db_xref="ASAP:ABE-0001452" /db_xref="UniProtKB/Swiss-Prot:P0AGG0" /db_xref="EcoGene:EG20227" /db_xref="GeneID:947387" /translation="MACGEFSLIARYFDRVRSSRLDVELGIGDDCALLNIPEKQTLAI STDTLVAGNHFLPDIDPADLAYKALAVNLSDLAAMGADPAWLTLALTLPDVDEAWLES FSDSLFDLLNYYDMQLIGGDTTRGPLSMTLGIHGFVPMGRALTRSGAKPGDWIYVTGT PGDSAAGLAILQNRLQVADAKDADYLIKRHLRPSPRILQGQALRDLANSAIDLSDGLI SDLGHIVKASDCGARIDLALLPFSDALSRHVEPEQALRWALSGGEDYELCFTVPELNR GALDVALGHLGVPFTCIGQMTADIEGLCFIRDGEPVTLDWKGYDHFATP" gene 436589..437107 /gene="pgpA" /locus_tag="b0418" /gene_synonym="ECK0412; JW0408; yajN" /db_xref="EcoGene:EG10704" /db_xref="GeneID:947542" CDS 436589..437107 /gene="pgpA" /locus_tag="b0418" /gene_synonym="ECK0412; JW0408; yajN" /EC_number="3.1.3.27" /function="enzyme; Macromolecule synthesis, modification: Phospholipids" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0008654 - phospholipid biosynthetic process" /note="phosphatidylglycerophosphatase" /codon_start=1 /transl_table=11 /product="phosphatidylglycerophosphatase A" /protein_id="NP_414952.1" /db_xref="GI:16128403" /db_xref="ASAP:ABE-0001454" /db_xref="UniProtKB/Swiss-Prot:P18200" /db_xref="EcoGene:EG10704" /db_xref="GeneID:947542" /translation="MTILPRHKDVAKSRLKMSNPWHLLAVGFGSGLSPIVPGTMGSLA AIPFWYLMTFLPWQLYSLVVMLGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITL MALPTNDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILY FIGHHWPLGILS" repeat_region 437120..437156 /note="REP38 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(437161..438135) /gene="yajO" /locus_tag="b0419" /gene_synonym="ECK0413; JW0409" /db_xref="EcoGene:EG13611" /db_xref="GeneID:946903" CDS complement(437161..438135) /gene="yajO" /locus_tag="b0419" /gene_synonym="ECK0413; JW0409" /note="putative NAD(P)H-dependent xylose reductase" /codon_start=1 /transl_table=11 /product="2-carboxybenzaldehyde reductase" /protein_id="NP_414953.2" /db_xref="GI:90111130" /db_xref="ASAP:ABE-0001457" /db_xref="UniProtKB/Swiss-Prot:P77735" /db_xref="EcoGene:EG13611" /db_xref="GeneID:946903" /translation="MQYNPLGKTDLRVSRLCLGCMTFGEPDRGNHAWTLPEESSRPII KRALEGGINFFDTANSYSDGSSEEIVGRALRDFARREDVVVATKVFHRVGDLPEGLSR AQILRSIDDSLRRLGMDYVDILQIHRWDYNTPIEETLEALNDVVKAGKARYIGASSMH ASQFAQALELQKQHGWAQFVSMQDHYNLIYREEEREMLPLCYQEGVAVIPWSPLARGR LTRPWGETTARLVSDEVGKNLYKESDENDAQIAERLTGVSEELGATRAQVALAWLLSK PGIAAPIIGTSREEQLDELLNAVDITLKPEQIAELETPYKPHPVVGFK" gene complement(438315..440177) /gene="dxs" /locus_tag="b0420" /gene_synonym="ECK0414; JW0410; yajP" /db_xref="EcoGene:EG13612" /db_xref="GeneID:945060" CDS complement(438315..440177) /gene="dxs" /locus_tag="b0420" /gene_synonym="ECK0414; JW0410; yajP" /EC_number="2.2.1.7" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_process="GO:0008615 - pyridoxine biosynthetic process; GO:0009228 - thiamin biosynthetic process" /note="1-deoxyxylulose-5-phosphate synthase; flavoprotein" /codon_start=1 /transl_table=11 /product="1-deoxyxylulose-5-phosphate synthase, thiamine triphosphate-binding, FAD-requiring" /protein_id="NP_414954.1" /db_xref="GI:16128405" /db_xref="ASAP:ABE-0001461" /db_xref="UniProtKB/Swiss-Prot:P77488" /db_xref="EcoGene:EG13612" /db_xref="GeneID:945060" /translation="MSFDIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVS RSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKG GLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMA FEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSG VPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDLKGPQ FLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPSYSKIFGDWLCETAA KDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIY STFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMT PSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEKLPIGKGIVKRRGEKLAI LNFGTLMPEAAKVAESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAG SGVNEVLMAHRKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWLA" gene complement(440202..441101) /gene="ispA" /locus_tag="b0421" /gene_synonym="ECK0415; JW0411" /db_xref="EcoGene:EG10508" /db_xref="GeneID:945064" CDS complement(440202..441101) /gene="ispA" /locus_tag="b0421" /gene_synonym="ECK0415; JW0411" /EC_number="2.5.1.1" /EC_number="2.5.1.10" /function="enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone" /experiment="N-terminus verified by Edman degradation: PMID 9740056" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="geranyltranstransferase" /protein_id="NP_414955.1" /db_xref="GI:16128406" /db_xref="ASAP:ABE-0001463" /db_xref="UniProtKB/Swiss-Prot:P22939" /db_xref="EcoGene:EG10508" /db_xref="GeneID:945064" /translation="MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGG KRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCH VKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQAL DLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLA FQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQ LAEQSLDTSALEALADYIIQRNK" gene complement(441101..441343) /gene="xseB" /locus_tag="b0422" /gene_synonym="ECK0416; JW0412; yajE" /db_xref="EcoGene:EG11098" /db_xref="GeneID:945069" CDS complement(441101..441343) /gene="xseB" /locus_tag="b0422" /gene_synonym="ECK0416; JW0412; yajE" /EC_number="3.1.11.6" /function="enzyme; Degradation of DNA" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006308 - DNA catabolic process; GO:0006281 - DNA repair" /note="exonuclease VII, small subunit" /codon_start=1 /transl_table=11 /product="exonuclease VII small subunit" /protein_id="NP_414956.1" /db_xref="GI:16128407" /db_xref="ASAP:ABE-0001466" /db_xref="UniProtKB/Swiss-Prot:P0A8G9" /db_xref="EcoGene:EG11098" /db_xref="GeneID:945069" /translation="MPKKNEAPASFEKALSELEQIVTRLESGDLPLEEALNEFERGVQ LARQGQAKLQQAEQRVQILLSDNEDASLTPFTPDNE" gene 441549..442997 /gene="thiI" /locus_tag="b0423" /gene_synonym="ECK0417; JW0413; nuvA; yajJ; yajK" /db_xref="EcoGene:EG13273" /db_xref="GeneID:945067" CDS 441549..442997 /gene="thiI" /locus_tag="b0423" /gene_synonym="ECK0417; JW0413; nuvA; yajJ; yajK" /function="enzyme; tRNA modification" /GO_process="GO:0009451 - RNA modification; GO:0009228 - thiamin biosynthetic process" /codon_start=1 /transl_table=11 /product="tRNA s(4)U8 sulfurtransferase" /protein_id="NP_414957.1" /db_xref="GI:16128408" /db_xref="ASAP:ABE-0001470" /db_xref="UniProtKB/Swiss-Prot:P77718" /db_xref="EcoGene:EG13273" /db_xref="GeneID:945067" /translation="MKFIIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVV RHWDNIEVRAKDENQRLAIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALVQYRDQL EGKTFCVRVKRRGKHDFSSIDVERYVGGGLNQHIESARVKLTNPDVTVHLEVEDDRLL LIKGRYEGIGGFPIGTQEDVLSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEI GVRQVAHYLWNRFGSSHRVRFVAINFEPVVGEILEKIDDGQMGVILKRMMVRAASKVA ERYGVQALVTGEALGQVSSQTLTNLRLIDNVSDTLILRPLISYDKEHIINLARQIGTE DFARTMPEYCGVISKSPTVKAVKSKIEAEEEKFDFSILDKVVEEANNVDIREIAQQTE QEVVEVETVNGFGPNDVILDIRSIDEQEDKPLKVEGIDVVSLPFYKLSTKFGDLDQNK TWLLWCERGVMSRLQALYLREQGFNNVKVYRP" repeat_region 443018..443049 /note="REP39 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(443051..443641) /gene="yajL" /locus_tag="b0424" /gene_synonym="ECK0418; JW5057; thiJ" /db_xref="EcoGene:EG13272" /db_xref="GeneID:945066" CDS complement(443051..443641) /gene="yajL" /locus_tag="b0424" /gene_synonym="ECK0418; JW5057; thiJ" /GO_process="GO:0009102 - biotin biosynthetic process" /codon_start=1 /transl_table=11 /product="oxidative-stress-resistance chaperone" /protein_id="NP_414958.4" /db_xref="GI:90111131" /db_xref="ASAP:ABE-0001472" /db_xref="UniProtKB/Swiss-Prot:Q46948" /db_xref="EcoGene:EG13272" /db_xref="GeneID:945066" /translation="MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLA ITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIV AAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDARVKLLTSQGPGT AIDFGLKIIDLLVGREKAHEVASQLVMAAGIYNYYE" gene complement(443604..444515) /gene="panE" /locus_tag="b0425" /gene_synonym="apbA; ECK0419; JW0415" /db_xref="EcoGene:EG13271" /db_xref="GeneID:945065" CDS complement(443604..444515) /gene="panE" /locus_tag="b0425" /gene_synonym="apbA; ECK0419; JW0415" /EC_number="1.1.1.169" /function="phenotype; Not classified" /GO_process="GO:0006221 - pyrimidine nucleotide biosynthetic process" /note="2-dehydropantoate 2-reductase" /codon_start=1 /transl_table=11 /product="2-dehydropantoate reductase, NADPH-specific" /protein_id="NP_414959.1" /db_xref="GI:16128410" /db_xref="ASAP:ABE-0001474" /db_xref="UniProtKB/Swiss-Prot:P0A9J4" /db_xref="EcoGene:EG13271" /db_xref="GeneID:945065" /translation="MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVET DGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGT IEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVL PDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIERE GHHTSAEDLRDYVMQVIDATAENISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVP ENTRLFEMVKRKESEYERIGTGLPRPW" gene 444683..445174 /gene="yajQ" /locus_tag="b0426" /gene_synonym="ECK0420; JW5058" /db_xref="EcoGene:EG13613" /db_xref="GeneID:945063" CDS 444683..445174 /gene="yajQ" /locus_tag="b0426" /gene_synonym="ECK0420; JW5058" /codon_start=1 /transl_table=11 /product="phage Phi6 host factor, ATP/GTP binding protein" /protein_id="NP_414960.2" /db_xref="GI:90111132" /db_xref="ASAP:ABE-0001478" /db_xref="UniProtKB/Swiss-Prot:P0A8E7" /db_xref="EcoGene:EG13613" /db_xref="GeneID:945063" /translation="MPSFDIVSEVDLQEARNAVDNASREVESRFDFRNVEASFELNDA SKTIKVLSESDFQVNQLLDILRAKLLKRGIEGSSLDVPENIVHSGKTWFVEAKLKQGI ESATQKKIVKMIKDSKLKVQAQIQGDEIRVTGKSRDDLQAVMAMVRGGDLGQPFQFKN FRD" repeat_region 445200..445286 /note="REP40 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(445302..446666) /gene="yajR" /locus_tag="b0427" /gene_synonym="ECK0421; JW5059" /db_xref="EcoGene:EG13614" /db_xref="GeneID:945058" CDS complement(445302..446666) /gene="yajR" /locus_tag="b0427" /gene_synonym="ECK0421; JW5059" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042493 - response to drug" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="NP_414961.4" /db_xref="GI:90111133" /db_xref="ASAP:ABE-0001481" /db_xref="UniProtKB/Swiss-Prot:P77726" /db_xref="EcoGene:EG13614" /db_xref="GeneID:945058" /translation="MNDYKMTPGERRATWGLGTVFSLRMLGMFMVLPVLTTYGMALQG ASEALIGIAIGIYGLTQAVFQIPFGLLSDRIGRKPLIVGGLAVFAAGSVIAALSDSIW GIILGRALQGSGAIAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITH KLGLHALFWMIAILATTGIALTIWVVPNSSTHVLNRESGMVKGSFSKVLAEPRLLKLN FGIMCLHILLMSTFVALPGQLADAGFPAAEHWKVYLATMLIAFGSVVPFIIYAEVKRK MKQVFVFCVGLIVVAEIVLWNAQTQFWQLVVGVQLFFVAFNLMEALLPSLISKESPAG YKGTAMGVYSTSQFLGVAIGGSLGGWINGMFDGQGVFLAGAMLAAVWLTVASTMKEPP YVSSLRIEIPANIAANEALKVRLLETEGIKEVLIAEEEHSAYVKIDSKVTNRFEIEQA IRQA" gene complement(446815..447705) /gene="cyoE" /locus_tag="b0428" /gene_synonym="ECK0422; JW0418" /db_xref="EcoGene:EG10182" /db_xref="GeneID:945073" CDS complement(446815..447705) /gene="cyoE" /locus_tag="b0428" /gene_synonym="ECK0422; JW0418" /EC_number="2.5.1.-" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009060 - aerobic respiration" /note="protoheme IX farnesyltransferase (haeme O biosynthesis)" /codon_start=1 /transl_table=11 /product="protoheme IX farnesyltransferase" /protein_id="NP_414962.1" /db_xref="GI:16128413" /db_xref="ASAP:ABE-0001484" /db_xref="UniProtKB/Swiss-Prot:P0AEA5" /db_xref="EcoGene:EG10182" /db_xref="GeneID:945073" /translation="MMFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLV GVSLVVASGCVFNNYIDRDIDRKMERTKNRVLVKGLISPAVSLVYATLLGIAGFMLLW FGANPLACWLGVMGFVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGEFDS GAAILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKNHITLYIIAFAV ATLMLSLGGYAGYKYLVVAAAVSVWWLGMALRGYKVADDRIWARKLFGFSIIAITALS VMMSVDFMVPDSHTLLAAVW" gene complement(447717..448046) /gene="cyoD" /locus_tag="b0429" /gene_synonym="ECK0423; JW0419" /db_xref="EcoGene:EG10181" /db_xref="GeneID:944918" CDS complement(447717..448046) /gene="cyoD" /locus_tag="b0429" /gene_synonym="ECK0423; JW0419" /EC_number="1.10.3.-" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009060 - aerobic respiration" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit IV" /protein_id="NP_414963.1" /db_xref="GI:16128414" /db_xref="ASAP:ABE-0001487" /db_xref="UniProtKB/Swiss-Prot:P0ABJ6" /db_xref="EcoGene:EG10181" /db_xref="GeneID:944918" /translation="MSHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPA VILGTILAMAVVQVLVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNL NYNMMMH" gene complement(448046..448660) /gene="cyoC" /locus_tag="b0430" /gene_synonym="ECK0424; JW0420" /db_xref="EcoGene:EG10180" /db_xref="GeneID:946897" CDS complement(448046..448660) /gene="cyoC" /locus_tag="b0430" /gene_synonym="ECK0424; JW0420" /EC_number="1.10.3.-" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009060 - aerobic respiration" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit III" /protein_id="NP_414964.1" /db_xref="GI:16128415" /db_xref="ASAP:ABE-0001491" /db_xref="UniProtKB/Swiss-Prot:P0ABJ3" /db_xref="EcoGene:EG10180" /db_xref="GeneID:946897" /translation="MATDTLTHATAHAHEHGHHDAGGTKIFGFWIYLMSDCILFSILF ATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWL ALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVL MVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM" gene complement(448650..450641) /gene="cyoB" /locus_tag="b0431" /gene_synonym="ECK0425; JW0421" /db_xref="EcoGene:EG10179" /db_xref="GeneID:945615" CDS complement(448650..450641) /gene="cyoB" /locus_tag="b0431" /gene_synonym="ECK0425; JW0421" /EC_number="1.10.3.-" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009060 - aerobic respiration" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit I" /protein_id="NP_414965.1" /db_xref="GI:16128416" /db_xref="ASAP:ABE-0001493" /db_xref="UniProtKB/Swiss-Prot:P0ABI8" /db_xref="EcoGene:EG10179" /db_xref="GeneID:945615" /translation="MFGKLSLDAVPFHEPIVMVTIAGIILGGLALVGLITYFGKWTYL WKEWLTSVDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQI FTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSL GVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAP GMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYI NLIWAWGHPEVYILILPVFGVFSEIAATFSRKRLFGYTSLVWATVCITVLSFIVWLHH FFTMGAGANVNAFFGITTMIIAIPTGVKIFNWLFTMYQGRIVFHSAMLWTIGFIVTFS VGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAFGFKLNE TWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQIDPQFHTMLMIAASGAVLIALG ILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWATSSPPPFYNFAVVPHVHERDAFWE MKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMIWHIWWLAIVGFAGMIIT WIVKSFDEDVDYYVPVAEIEKLENQHFDEITKAGLKNGN" gene complement(450663..451610) /gene="cyoA" /locus_tag="b0432" /gene_synonym="ECK0426; JW0422" /db_xref="EcoGene:EG10178" /db_xref="GeneID:945080" CDS complement(450663..451610) /gene="cyoA" /locus_tag="b0432" /gene_synonym="ECK0426; JW0422" /EC_number="1.10.3.-" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009060 - aerobic respiration" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit II" /protein_id="NP_414966.1" /db_xref="GI:16128417" /db_xref="ASAP:ABE-0001495" /db_xref="UniProtKB/Swiss-Prot:P0ABJ1" /db_xref="EcoGene:EG10178" /db_xref="GeneID:945080" /translation="MRLRKYNKSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLI LTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIF LAVLTWKTTHALEPSKPLAHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTP VYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGM KFKAIATPDRAAFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFAD VINKFMAHGKSMDMTQPEGEHSAHEGMEGMDMSHAESAH" gene complement(452070..453545) /gene="ampG" /locus_tag="b0433" /gene_synonym="ECK0427; JW0423" /db_xref="EcoGene:EG12183" /db_xref="GeneID:946438" CDS complement(452070..453545) /gene="ampG" /locus_tag="b0433" /gene_synonym="ECK0427; JW0423" /function="regulator; Drug/analog sensitivity" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0000270 - peptidoglycan metabolic process" /note="regulates beta-lactamase synthesis" /codon_start=1 /transl_table=11 /product="muropeptide transporter" /protein_id="NP_414967.1" /db_xref="GI:16128418" /db_xref="ASAP:ABE-0001501" /db_xref="UniProtKB/Swiss-Prot:P0AE16" /db_xref="EcoGene:EG12183" /db_xref="GeneID:946438" /translation="MSSQYLRIFQQPRSAILLILGFASGLPLALTSGTLQAWMTVENI DLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFFGRRRGWLLATQILLLVAIAAMGFLE PGTQLRWMAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSG GLALWLADKWLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDF FGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGA LYGGILMQRLSLFRALLIFGILQGASNAGYWLLSITDKHLYSMGAAVFFENLCGGMGT SAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWSTFYLFSVAAA VPGLILLLVCRQTLEYTRVNDNFISRTAYPAGYAFAMWTLAAGVSLLAVWLLLLTMDA LDLTHFSFLPALLEVGVLVALSGVVLGGLLDYLALRKTHLT" gene complement(453589..454167) /gene="yajG" /locus_tag="b0434" /gene_synonym="ECK0428; JW0424" /db_xref="EcoGene:EG12182" /db_xref="GeneID:945521" CDS complement(453589..454167) /gene="yajG" /locus_tag="b0434" /gene_synonym="ECK0428; JW0424" /function="putative enzyme; Not classified" /note="putative polymerase/proteinase" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="NP_414968.4" /db_xref="GI:90111134" /db_xref="ASAP:ABE-0001504" /db_xref="UniProtKB/Swiss-Prot:P0ADA5" /db_xref="EcoGene:EG12182" /db_xref="GeneID:945521" /translation="MFKKILFPLVALFMLAGCAKPPTTIEVSPTITLPQQDPSLMGVT VSINGADQRTDQALAKVTRDNQIVTLTASRDLRFLLQEVLEKQMTARGYMVGPNGPVN LQIIVSQLYADVSQGNVRYNIATKADIAIIATAQNGNKMTKNYRASYNVEGAFQASNK NIADAVNSVLTDTIADMSQDTSIHEFIKQNAR" gene 454472..454789 /gene="bolA" /locus_tag="b0435" /gene_synonym="ECK0429; JW5060" /db_xref="EcoGene:EG10125" /db_xref="GeneID:947043" CDS 454472..454789 /gene="bolA" /locus_tag="b0435" /gene_synonym="ECK0429; JW5060" /function="putative regulator; Murein sacculus, peptidoglycan" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006970 - response to osmotic stress" /note="possible regulator of murein genes" /codon_start=1 /transl_table=11 /product="stationary-phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC" /protein_id="NP_414969.4" /db_xref="GI:90111135" /db_xref="ASAP:ABE-0001508" /db_xref="UniProtKB/Swiss-Prot:P0ABE2" /db_xref="EcoGene:EG10125" /db_xref="GeneID:947043" /translation="MMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLV SDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTYTIKEWEGLQDTVFASPPCRGAG SIA" gene 455133..456431 /gene="tig" /locus_tag="b0436" /gene_synonym="ECK0430; JW0426" /db_xref="EcoGene:EG11003" /db_xref="GeneID:945081" CDS 455133..456431 /gene="tig" /locus_tag="b0436" /gene_synonym="ECK0430; JW0426" /function="factor; Cell division" /experiment="N-terminus verified by Edman degradation: PMID 2211496,2843289,9298646,9600841,9868784" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006457 - protein folding" /note="trigger factor; a molecular chaperone involved in cell division" /codon_start=1 /transl_table=11 /product="peptidyl-prolyl cis/trans isomerase (trigger factor)" /protein_id="NP_414970.1" /db_xref="GI:16128421" /db_xref="ASAP:ABE-0001511" /db_xref="UniProtKB/Swiss-Prot:P0A850" /db_xref="EcoGene:EG11003" /db_xref="GeneID:945081" /translation="MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGF RKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLGED FTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDADVDGMLDTLRKQQATWKEKDGAVEA EDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFP EEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMER ELKSAIRNRVKSQAIEGLVKANDIDVPAALIDSEIDVLRRQAAQRFGGNEKQALELPR ELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKGLIEEMASAYEDPKEVIEFYSKNK ELMDNMRNVALEEQAVEAVLAKAKVTEKETTFNELMNQQA" gene 456677..457300 /gene="clpP" /locus_tag="b0437" /gene_synonym="ECK0431; JW0427; lopP; wseA" /db_xref="EcoGene:EG10158" /db_xref="GeneID:945082" CDS 456677..457300 /gene="clpP" /locus_tag="b0437" /gene_synonym="ECK0431; JW0427; lopP; wseA" /EC_number="3.4.21.92" /function="enzyme; Degradation of proteins, peptides, glyco" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0008233 - peptidase activity" /GO_process="GO:0009266 - response to temperature stimulus" /note="ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5" /codon_start=1 /transl_table=11 /product="proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases" /protein_id="NP_414971.1" /db_xref="GI:16128422" /db_xref="ASAP:ABE-0001515" /db_xref="UniProtKB/Swiss-Prot:P0A6G7" /db_xref="EcoGene:EG10158" /db_xref="GeneID:945082" /translation="MSYSGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIF LTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVS TICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVK GRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN" gene 457426..458700 /gene="clpX" /locus_tag="b0438" /gene_synonym="ECK0432; JW0428; lopC" /db_xref="EcoGene:EG10159" /db_xref="GeneID:945083" CDS 457426..458700 /gene="clpX" /locus_tag="b0438" /gene_synonym="ECK0432; JW0428; lopC" /function="enzyme; Degradation of proteins, peptides, glyco" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006457 - protein folding" /note="ATP-dependent specificity component of clpP serine protease, chaperone" /codon_start=1 /transl_table=11 /product="ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease" /protein_id="NP_414972.1" /db_xref="GI:16128423" /db_xref="ASAP:ABE-0001517" /db_xref="UniProtKB/Swiss-Prot:P0A6H1" /db_xref="EcoGene:EG10159" /db_xref="GeneID:945083" /translation="MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLC NDIIREEIKEVAPHRERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG DTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN IIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKA KSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALT KQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMED VEKVVIDESVIDGQSKPLLIYGKPEAQQASGE" gene 458888..461242 /gene="lon" /locus_tag="b0439" /gene_synonym="capR; deg; dir; ECK0433; JW0429; lonA; lopA; muc" /db_xref="EcoGene:EG10542" /db_xref="GeneID:945085" CDS 458888..461242 /gene="lon" /locus_tag="b0439" /gene_synonym="capR; deg; dir; ECK0433; JW0429; lonA; lopA; muc" /EC_number="3.4.21.53" /function="enzyme; Global regulatory functions" /experiment="N-terminus verified by Edman degradation: PMID 2984174,8294008" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0008233 - peptidase activity" /note="DNA-binding, ATP-dependent protease La; heat shock K-protein" /codon_start=1 /transl_table=11 /product="DNA-binding ATP-dependent protease La" /protein_id="NP_414973.1" /db_xref="GI:16128424" /db_xref="ASAP:ABE-0001521" /db_xref="UniProtKB/Swiss-Prot:P0A9M0" /db_xref="EcoGene:EG10542" /db_xref="GeneID:945085" /translation="MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAM DHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISA LSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSID DPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVK KQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQ KLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRI LEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR GHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNV AFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLP KQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLK HIEINGDNLHDYLGVQRFDYGRADNENRVGQVTGLAWTEVGGDLLTIETACVPGKGKL TYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGI AMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFEN KRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGMQVVTAK" gene 461451..461723 /gene="hupB" /locus_tag="b0440" /gene_synonym="dpeA; ECK0434; hopD; JW0430" /db_xref="EcoGene:EG10467" /db_xref="GeneID:949095" CDS 461451..461723 /gene="hupB" /locus_tag="b0440" /gene_synonym="dpeA; ECK0434; hopD; JW0430" /function="factor; Basic proteins - synthesis, modification" /experiment="N-terminus verified by Edman degradation: PMID 215461,350619,6987059,9298646" /GO_component="GO:0005737 - cytoplasm" /note="DNA-binding protein HU-beta, NS1 (HU-1)" /codon_start=1 /transl_table=11 /product="HU, DNA-binding transcriptional regulator, beta subunit" /protein_id="NP_414974.1" /db_xref="GI:16128425" /db_xref="ASAP:ABE-0001527" /db_xref="UniProtKB/Swiss-Prot:P0ACF4" /db_xref="EcoGene:EG10467" /db_xref="GeneID:949095" /translation="MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVAL VGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN" gene 461915..463786 /gene="ppiD" /locus_tag="b0441" /gene_synonym="ECK0435; JW0431; ybaU" /db_xref="EcoGene:EG13249" /db_xref="GeneID:946056" CDS 461915..463786 /gene="ppiD" /locus_tag="b0441" /gene_synonym="ECK0435; JW0431; ybaU" /EC_number="5.2.1.8" /function="putative factor; Not classified" /GO_process="GO:0006457 - protein folding" /codon_start=1 /transl_table=11 /product="periplasmic folding chaperone, has an inactive PPIase domain" /protein_id="NP_414975.1" /db_xref="GI:16128426" /db_xref="ASAP:ABE-0001531" /db_xref="UniProtKB/Swiss-Prot:P0ADY1" /db_xref="EcoGene:EG13249" /db_xref="GeneID:946056" /translation="MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNYAAK VNDQEISRGQFENAFNSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLD QYARELKLGISDEQVKQAIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQL TTQQLINGVAGTDFMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYY EQNKNNFMTPEQFRVSYIKLDAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQT KTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKE KGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVS DAASNDTESLAGAEQAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPG INSDIITVDGDRAFVLRISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLV DLKAGKGAEAMQAAGLKFGEPKTLSRSGRDPISQAAFALPLPAKDKPSYGMATDMQGN VVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ" gene 463937..464308 /gene="ybaV" /locus_tag="b0442" /gene_synonym="ECK0436; JW0432" /db_xref="EcoGene:EG13250" /db_xref="GeneID:945884" CDS 463937..464308 /gene="ybaV" /locus_tag="b0442" /gene_synonym="ECK0436; JW0432" /codon_start=1 /transl_table=11 /product="putative competence-suppressing periplasmic helix-hairpin-helix DNA-binding protein" /protein_id="NP_414976.1" /db_xref="GI:16128427" /db_xref="ASAP:ABE-0001534" /db_xref="UniProtKB/Swiss-Prot:P0AAR8" /db_xref="EcoGene:EG13250" /db_xref="GeneID:945884" /translation="MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAA QSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVED LKQVPGMGNSLVERNLAVLTL" gene 464402..464800 /gene="fadM" /locus_tag="b0443" /gene_synonym="ECK0437; JW0433; tesC; ybaW" /db_xref="EcoGene:EG13251" /db_xref="GeneID:945812" CDS 464402..464800 /gene="fadM" /locus_tag="b0443" /gene_synonym="ECK0437; JW0433; tesC; ybaW" /function="enzyme; fatty acid degradation" /codon_start=1 /transl_table=11 /product="long-chain acyl-CoA thioesterase III" /protein_id="NP_414977.1" /db_xref="GI:16128428" /db_xref="ASAP:ABE-0001537" /db_xref="UniProtKB/Swiss-Prot:P77712" /db_xref="EcoGene:EG13251" /db_xref="GeneID:945812" /translation="MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWM TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITLEPEGQVVADA LITFVCIDLKTQKALALEGELREKLEQMVK" repeat_region 464813..464837 /note="REP41 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(464852..465547) /gene="queC" /locus_tag="b0444" /gene_synonym="ECK0438; JW0434; ybaX" /db_xref="EcoGene:EG13252" /db_xref="GeneID:947034" CDS complement(464852..465547) /gene="queC" /locus_tag="b0444" /gene_synonym="ECK0438; JW0434; ybaX" /function="enzyme; Queuosine biosynthesis" /GO_process="GO:0006805 - xenobiotic metabolic process" /codon_start=1 /transl_table=11 /product="7-cyano-7-deazaguanine (preQ0) synthase; queuosine biosynthesis" /protein_id="NP_414978.1" /db_xref="GI:16128429" /db_xref="ASAP:ABE-0001539" /db_xref="UniProtKB/Swiss-Prot:P77756" /db_xref="EcoGene:EG13252" /db_xref="GeneID:947034" /translation="MKRAVVVFSGGQDSTTCLVQALQQYDEVHCVTFDYGQRHRAEID VARELALKLGARAHKVLDVTLLNELAVSSLTRDSIPVPDYEPEADGIPNTFVPGRNIL FLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVSLGMAKDIRFETPL MWIDKAETWALADYYGKLDLVRNETLTCYNGFKGDGCGHCAACNLRANGLNHYLADKP TVMAAMKQKTGLR" gene complement(465612..467312) /gene="ybaE" /locus_tag="b0445" /gene_synonym="ECK0439; JW0435" /db_xref="EcoGene:EG13217" /db_xref="GeneID:949093" CDS complement(465612..467312) /gene="ybaE" /locus_tag="b0445" /gene_synonym="ECK0439; JW0435" /GO_component="GO:0042597 - periplasmic space" /codon_start=1 /transl_table=11 /product="putative ABC transporter periplasmic binding protein" /protein_id="NP_414979.1" /db_xref="GI:16128430" /db_xref="ASAP:ABE-0001542" /db_xref="UniProtKB/Swiss-Prot:P46890" /db_xref="EcoGene:EG13217" /db_xref="GeneID:949093" /translation="MRLLNRLNQYQRLWQPSAGKPQTVTVSELAERCFCSERHVRTLL RQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQALETGKQQDVLELAQLAPG ELRTLLQPFMGGQWQNDTPTLRIPYYRPLEPLQPGFLPGRAEQHLAGQIFSGLTRFDN NTQRPIGDLAHHWETSTDGLRWDFYLRSTLHWHNGDAVKASHLHQRLLMLLQLPALDQ LFISVKRIEVTHPQCLTFFLHRPDYWLAHRLASYCSHLAHPQFPLIGTGPFRLTQFTA ELVRLESHDYYHLRHPLLKAVEYWITPPLFEKDLGTSCRHPVQITIGKPEELQRVSQV SSGISLGFCYLTLRKSPRLSLWQARKVISIIHQSGLLQTLEVGENLITASHALLPGWT IPHWQVPDEVKLPKTLTLVYHLPIELHTMAERLQATLAAEGCELTIIFHNAKNWDDTT LQAHADLMMGDRLIGEAPEYTLEQWLRCDPLWPHVFDAPAYAHLQSTLDAVQIMPDEE NRFNALKAVFSQLMTDATLTPLFNYHYRISAPPGVNGVRLTPRGWFEFTEAWLPAPSQ " gene 467412..468230 /gene="cof" /locus_tag="b0446" /gene_synonym="ECK0440; JW0436" /db_xref="EcoGene:EG13216" /db_xref="GeneID:945089" CDS 467412..468230 /gene="cof" /locus_tag="b0446" /gene_synonym="ECK0440; JW0436" /codon_start=1 /transl_table=11 /product="thiamine pyrimidine pyrophosphate hydrolase; HMP-PP phosphatase" /protein_id="NP_414980.2" /db_xref="GI:90111136" /db_xref="ASAP:ABE-0001548" /db_xref="UniProtKB/Swiss-Prot:P46891" /db_xref="EcoGene:EG13216" /db_xref="GeneID:945089" /translation="MARLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGR HALEMQHILGALSLDAYLITGNGTRVHSLEGELLHRDDLPADVAELVLYQQWDTRASM HIFNDDGWFTGKEIPALLQAFVYSGFRYQIIDVKKMPLGSVTKICFCGDHDDLTRLQI QLYEALGERAHLCFSATDCLEVLPVGCNKGAALTVLTQHLGLSLRDCMAFGDAMNDRE MLVSVGSGFIMGNAMPQLRAELPHLPVIGHCRNQAVSHYLTHWLDYPHLPYSPE" gene 468383..468841 /gene="ybaO" /locus_tag="b0447" /gene_synonym="ECK0441; grp?; JW0437" /db_xref="EcoGene:EG13218" /db_xref="GeneID:945091" CDS 468383..468841 /gene="ybaO" /locus_tag="b0447" /gene_synonym="ECK0441; grp?; JW0437" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative LRP-like transcriptional regulator" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator" /protein_id="NP_414981.4" /db_xref="GI:90111137" /db_xref="ASAP:ABE-0001553" /db_xref="UniProtKB/Swiss-Prot:P0ACJ5" /db_xref="EcoGene:EG13218" /db_xref="GeneID:945091" /translation="MLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLED DGILIGKVALLDPEKIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGE YDYLMRVQVADMKRYDEFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE" gene 468871..470643 /gene="mdlA" /locus_tag="b0448" /gene_synonym="ECK0442; JW0438; mdl" /db_xref="EcoGene:EG11622" /db_xref="GeneID:945092" CDS 468871..470643 /gene="mdlA" /locus_tag="b0448" /gene_synonym="ECK0442; JW0438; mdl" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042493 - response to drug" /codon_start=1 /transl_table=11 /product="putative multidrug ABC transporter ATPase" /protein_id="NP_414982.1" /db_xref="GI:16128433" /db_xref="ASAP:ABE-0001555" /db_xref="UniProtKB/Swiss-Prot:P77265" /db_xref="EcoGene:EG11622" /db_xref="GeneID:945092" /translation="MRLFAQLSWYFRREWRRYLGAVALLVIIAMLQLVPPKVVGIVVD GVTEQHFTTGQILMWIATMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDYYRQLSR QHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIMMSTQISWQL TLFSLLPMPVMAIMIKRNGDALHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR QSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVQGSLTLGQ LTSFMMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVNDGSEPVPEGRGE LDVNIHQFTYPQTDHPALENVNFALKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGD IRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGCPNATQQEIEHVARLAS VHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLVNAEILILDDALSAVDGRTE HQILHNLRQWGQGRTVIISAHRLSALTEASEIIVMQHGHIAQRGNHDVLAQQSGWYRD MYRYQQLEAALDDAPENREEAVDA" gene 470636..472417 /gene="mdlB" /locus_tag="b0449" /gene_synonym="ECK0443; JW5061; mdl" /db_xref="EcoGene:EG14374" /db_xref="GeneID:945088" CDS 470636..472417 /gene="mdlB" /locus_tag="b0449" /gene_synonym="ECK0443; JW5061; mdl" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative multidrug ABC transporter ATPase" /protein_id="NP_414983.1" /db_xref="GI:16128434" /db_xref="ASAP:ABE-0001557" /db_xref="UniProtKB/Swiss-Prot:P0AAG5" /db_xref="EcoGene:EG14374" /db_xref="GeneID:945088" /translation="MRSFSQLWPTLKRLLAYGSPWRKPLGIAVLMMWVAAAAEVSGPL LISYFIDNMVAKNNLPLKVVAGLAAAYVGLQLFAAGLHYAQSLLFNRAAVGVVQQLRT DVMDAALRQPLSEFDTQPVGQVISRVTNDTEVIRDLYVTVVATVLRSAALVGAMLVAM FSLDWRMALVAIMIFPVVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEIINGMSVIQ QFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSSLILCGLLMLFGFSAS GTIEVGVLYAFISYLGRLNEPLIELTTQQAMLQQAVVAGERVFELMDGPRQQYGNDDR PLQSGTIEVDNVSFAYRDDNLVLKNINLSVPSRNFVALVGHTGSGKSTLASLLMGYYP LTEGEIRLDGRPLSSLSHSALRQGVAMVQQDPVVLADTFLANVTLGRDISEERVWQAL ETVQLAELARSMSDGIYTPLGEQGNNLSVGQKQLLALARVLVETPQILILDEATASID SGTEQAIQHALAAVREHTTLVVIAHRLSTIVDADTILVLHRGQAVEQGTHQQLLAAQG RYWQMYQLQLAGEELAASVREEESLSA" gene 472598..472936 /gene="glnK" /locus_tag="b0450" /gene_synonym="ECK0444; JW0440; ybaI" /db_xref="EcoGene:EG12191" /db_xref="GeneID:945087" CDS 472598..472936 /gene="glnK" /locus_tag="b0450" /gene_synonym="ECK0444; JW0440; ybaI" /function="regulator; Central intermediary metabolism: Pool, multipurpose conversions" /GO_process="GO:0006807 - nitrogen compound metabolic process" /note="nitrogen regulatory protein P-II 2" /codon_start=1 /transl_table=11 /product="nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB" /protein_id="NP_414984.1" /db_xref="GI:16128435" /db_xref="ASAP:ABE-0001562" /db_xref="UniProtKB/Swiss-Prot:P0AC55" /db_xref="EcoGene:EG12191" /db_xref="GeneID:945087" /translation="MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAE LYRGAEYSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRI RTGEADEAAL" gene 472966..474252 /gene="amtB" /locus_tag="b0451" /gene_synonym="ECK0445; JW0441; ybaG" /db_xref="EcoGene:EG11821" /db_xref="GeneID:945084" CDS 472966..474252 /gene="amtB" /locus_tag="b0451" /gene_synonym="ECK0445; JW0441; ybaG" /function="putative transport; Central intermediary metabolism: Pool, multipurpose conversions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="probable ammonium transporter" /codon_start=1 /transl_table=11 /product="ammonium transporter" /protein_id="NP_414985.1" /db_xref="GI:16128436" /db_xref="ASAP:ABE-0001564" /db_xref="UniProtKB/Swiss-Prot:P69681" /db_xref="EcoGene:EG11821" /db_xref="GeneID:945084" /translation="MKIATIKTGLASLAMLPGLVMAAPAVADKADNAFMMICTALVLF MTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEGNNFFGNINW LMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTL SYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPH NLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRG KPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPC DVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA FIGYKLADLTVGLRVPEEQEREGLDVNSHGENAYNA" repeat_region 474271..474293 /note="REP42 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(474301..475161) /gene="tesB" /locus_tag="b0452" /gene_synonym="ECK0446; JW0442" /db_xref="EcoGene:EG10995" /db_xref="GeneID:945074" CDS complement(474301..475161) /gene="tesB" /locus_tag="b0452" /gene_synonym="ECK0446; JW0442" /EC_number="3.1.2.-" /function="enzyme; Fatty acid and phosphatidic acid biosynthesis" /codon_start=1 /transl_table=11 /product="acyl-CoA thioesterase 2" /protein_id="NP_414986.1" /db_xref="GI:16128437" /db_xref="ASAP:ABE-0001566" /db_xref="UniProtKB/Swiss-Prot:P0AGG2" /db_xref="EcoGene:EG10995" /db_xref="GeneID:945074" /translation="MSQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQAL YAAKETVPEERLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIF YMTASFQAPEAGFEHQKTMPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEV RPVEFHNPLKGHVAEPHRQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIG FLEPGIQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVAST VQEGVMRNHN" gene 475379..475951 /gene="ybaY" /locus_tag="b0453" /gene_synonym="ECK0447; JW0443" /db_xref="EcoGene:EG13253" /db_xref="GeneID:945070" CDS 475379..475951 /gene="ybaY" /locus_tag="b0453" /gene_synonym="ECK0447; JW0443" /function="phenotype; Not classified" /GO_process="GO:0009101 - glycoprotein biosynthetic process; GO:0042158 - lipoprotein biosynthetic process" /note="glycoprotein/polysaccharide metabolism" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein" /protein_id="NP_414987.3" /db_xref="GI:49176025" /db_xref="ASAP:ABE-0001574" /db_xref="UniProtKB/Swiss-Prot:P77717" /db_xref="EcoGene:EG13253" /db_xref="GeneID:945070" /translation="MKLVHMASGLAVAIALAACADKSADIQTPAPAANTSISATQQPA IQQPNVSGTVWIRQKVALPPDAVLTVTLSDASLADAPSKVLAQKAVRTEGKQSPFSFV LSFNPADVQPNARILLSAAITVNDKLVFITDTVQPVINQGGTKADLTLVPVQQTAVPV QASGGATTTVPSTSPTQVNPSSAVPAPTQY" gene complement(475982..476371) /gene="ybaZ" /locus_tag="b0454" /gene_synonym="ECK0448; JW0444" /db_xref="EcoGene:EG13254" /db_xref="GeneID:945094" CDS complement(475982..476371) /gene="ybaZ" /locus_tag="b0454" /gene_synonym="ECK0448; JW0444" /codon_start=1 /transl_table=11 /product="excision repair protein, alkyltransferase-like protein ATL" /protein_id="NP_414988.1" /db_xref="GI:16128439" /db_xref="ASAP:ABE-0001576" /db_xref="UniProtKB/Swiss-Prot:P0AFP2" /db_xref="EcoGene:EG13254" /db_xref="GeneID:945094" /translation="MLVSCAMRLHSGVFPDYAEKLPQEEKMEKEDSFPQRVWQIVAAI PEGYVTTYGDVAKLAGSPRAARQVGGVLKRLPEGSTLPWHRVVNRHGTISLTGPDLQR QRQALLAEGVMVSGSGQIDLQRYRWNY" gene 476448..476561 /gene="ffs" /locus_tag="b0455" /gene_synonym="ECK0449; JWR0009" /db_xref="EcoGene:EG30027" /db_xref="GeneID:944909" ncRNA 476448..476561 /ncRNA_class="SRP_RNA" /gene="ffs" /locus_tag="b0455" /gene_synonym="ECK0449; JWR0009" /product="4.5S sRNA component of Signal Recognition Particle (SRP)" /note="4.5S RNA; component of ribonucleoprotein particle; works with the Ffh protein; adjusted endpoints to reflect the mature 4.5S RNA (114 nt)" /function="2.2.6 information transfer; RNA related; rRNA, stable RNA" /function="2.3.2 information transfer; protein related; translation" /function="7.1 location of gene products; cytoplasm" /function="component of Signal Recognition Particle (SRP) with the Ffh protein; involved in co-translational targeting of proteins to membranes" /function="RNA; Ribosomal and stable RNAs" /db_xref="ASAP:ABE-0001579" /db_xref="EcoGene:EG30027" /db_xref="GeneID:944909" gene 476672..477025 /gene="ybaA" /locus_tag="b0456" /gene_synonym="ECK0450; JW0445" /db_xref="EcoGene:EG11099" /db_xref="GeneID:948863" CDS 476672..477025 /gene="ybaA" /locus_tag="b0456" /gene_synonym="ECK0450; JW0445" /codon_start=1 /transl_table=11 /product="DUF1428 family protein" /protein_id="NP_414989.1" /db_xref="GI:16128440" /db_xref="ASAP:ABE-0001582" /db_xref="UniProtKB/Swiss-Prot:P0AAQ6" /db_xref="EcoGene:EG11099" /db_xref="GeneID:948863" /translation="MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWAS DVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFD GKRMIYGGFESIIDE" gene complement(477067..478617) /gene="ylaB" /locus_tag="b0457" /gene_synonym="ECK0451; JW5062" /db_xref="EcoGene:EG14237" /db_xref="GeneID:948951" CDS complement(477067..478617) /gene="ylaB" /locus_tag="b0457" /gene_synonym="ECK0451; JW5062" /codon_start=1 /transl_table=11 /product="putative membrane-anchored cyclic-di-GMP phosphodiesterase" /protein_id="NP_414990.2" /db_xref="GI:90111138" /db_xref="ASAP:ABE-0001584" /db_xref="UniProtKB/Swiss-Prot:P77473" /db_xref="EcoGene:EG14237" /db_xref="GeneID:948951" /translation="MRTRHLVGLISGVLILSVLLPVGLSIWLAHQQVETSFIEELDTY SSRVAIRANKVATQGKDALQELERWQGAACSEAHLMEMRRVSYSYRYIQEVAYIDNNV PQCSSLEHESPPDTFPEPGKISKDGYRVWLTSHNDLGIIRYMVAMGTAHYVVMIDPAS FIDVIPYSSWQIDAAIIGNAHNVVITSSDEIAQGIITRLQKTPGEHIENNGIIYDILP LPEMNISIITWASTKMLQKGWHRQVFIWLPLGLVIGLLAAMFVLRILRRIQSPHHRLQ DAIENRDICVHYQPIVSLANGKIVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSEPL TLLIIRSVFEDMGDWLRQHPQQHISINLESPVLTSEKIPQLLRDMINHYQVNPRQIAL ELTEREFADPKTSAPIISRYREAGHEIYLDDFGTGYSSLSYLQDLDVDILKIDKSFVD ALEYKNVTPHIIEMAKTLKLKMVAEGIETSKQEEWLRQHGVHYGQGWLYSKALPKEDF LRWAEQHL" gene complement(478781..479251) /gene="ylaC" /locus_tag="b0458" /gene_synonym="ECK0452; JW5063" /db_xref="EcoGene:EG14238" /db_xref="GeneID:948876" CDS complement(478781..479251) /gene="ylaC" /locus_tag="b0458" /gene_synonym="ECK0452; JW5063" /codon_start=1 /transl_table=11 /product="DUF1449 family inner membrane protein" /protein_id="NP_414991.4" /db_xref="GI:90111139" /db_xref="ASAP:ABE-0001587" /db_xref="UniProtKB/Swiss-Prot:P0AAS0" /db_xref="EcoGene:EG14238" /db_xref="GeneID:948876" /translation="MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYV AFFATLAVMLQSETLSGSVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGE WYNTRFVPAALVEAILNSPRVADVHKEQLQKMIVRKGELSFYDIFTLARAESTS" gene complement(479367..479918) /gene="maa" /locus_tag="b0459" /gene_synonym="ECK0453; JW0448; ylaD" /db_xref="EcoGene:EG14239" /db_xref="GeneID:945096" CDS complement(479367..479918) /gene="maa" /locus_tag="b0459" /gene_synonym="ECK0453; JW0448; ylaD" /EC_number="2.3.1.79" /function="putative enzyme; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="maltose O-acetyltransferase" /protein_id="NP_414992.1" /db_xref="GI:16128443" /db_xref="ASAP:ABE-0001591" /db_xref="UniProtKB/Swiss-Prot:P77791" /db_xref="EcoGene:EG14239" /db_xref="GeneID:945096" /translation="MSTEKEKMIAGELYRSADETLSRDRLRARQLIHRYNHSLAEEHT LRQQILADLFGQVTEAYIEPTFRCDYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCML APGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGA VVTKDVPDNVVVGGNPARIIKKL" gene complement(480090..480308) /gene="hha" /locus_tag="b0460" /gene_synonym="ECK0454; JW0449" /db_xref="EcoGene:EG10439" /db_xref="GeneID:945098" CDS complement(480090..480308) /gene="hha" /locus_tag="b0460" /gene_synonym="ECK0454; JW0449" /function="regulator; Proteins - translation and modification" /GO_process="GO:0006350 - transcription" /note="haemolysin expression modulating protein" /codon_start=1 /transl_table=11 /product="modulator of gene expression, with H-NS" /protein_id="NP_414993.1" /db_xref="GI:16128444" /db_xref="ASAP:ABE-0001594" /db_xref="UniProtKB/Swiss-Prot:P0ACE3" /db_xref="EcoGene:EG10439" /db_xref="GeneID:945098" /translation="MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFY SAADHRLAELTMNKLYDKIPSSVWKFIR" gene complement(480334..480708) /gene="tomB" /locus_tag="b0461" /gene_synonym="ECK0455; JW0450; ybaJ" /db_xref="EcoGene:EG12429" /db_xref="GeneID:945106" CDS complement(480334..480708) /gene="tomB" /locus_tag="b0461" /gene_synonym="ECK0455; JW0450; ybaJ" /codon_start=1 /transl_table=11 /product="Hha toxicity attenuator; conjugation-related protein" /protein_id="NP_414994.1" /db_xref="GI:16128445" /db_xref="ASAP:ABE-0001596" /db_xref="UniProtKB/Swiss-Prot:P0AAR0" /db_xref="EcoGene:EG12429" /db_xref="GeneID:945106" /translation="MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAI NLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYLDDTFMLFSSYGINMQDLQKWRK SGNRLFRCFVNATKENPASLSC" gene complement(481254..484403) /gene="acrB" /locus_tag="b0462" /gene_synonym="acrE; ECK0456; JW0451" /db_xref="EcoGene:EG11704" /db_xref="GeneID:945108" CDS complement(481254..484403) /gene="acrB" /locus_tag="b0462" /gene_synonym="acrE; ECK0456; JW0451" /function="transport; Drug/analog sensitivity" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042493 - response to drug" /note="acridine efflux pump" /codon_start=1 /transl_table=11 /product="multidrug efflux system protein" /protein_id="NP_414995.1" /db_xref="GI:16128446" /db_xref="ASAP:ABE-0001601" /db_xref="UniProtKB/Swiss-Prot:P31224" /db_xref="EcoGene:EG11704" /db_xref="GeneID:945108" /translation="MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVT ISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADI AQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAA NMKDAISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQ LGGTPPVKGQQLNASIIAQTRLTSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYD IIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVK ISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINT LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLS AVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEG KKGFFGWFNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPD EDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNT GIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDF ELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNGLEDTPQFKIDIDQEKAQALG VSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDWYVRAADGQM VPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASKLPTGVG YDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALL AATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRL RPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVR RRFSRKNEDIEHSHTVDHH" gene complement(484426..485619) /gene="acrA" /locus_tag="b0463" /gene_synonym="ECK0457; JW0452; lir; Mb; mbl; mtcA; nbsA; sipB" /db_xref="EcoGene:EG11703" /db_xref="GeneID:945112" CDS complement(484426..485619) /gene="acrA" /locus_tag="b0463" /gene_synonym="ECK0457; JW0452; lir; Mb; mbl; mtcA; nbsA; sipB" /function="transport; Drug/analog sensitivity" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042493 - response to drug" /note="acridine efflux pump" /codon_start=1 /transl_table=11 /product="multidrug efflux system" /protein_id="NP_414996.1" /db_xref="GI:16128447" /db_xref="ASAP:ABE-0001603" /db_xref="UniProtKB/Swiss-Prot:P0AE06" /db_xref="EcoGene:EG11703" /db_xref="GeneID:945112" /translation="MNKNRGFTPLAVVLMLSGSLALTGCDDKQAQQGGQQMPAVGVVT VKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQ ATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAA KAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQ SSNDFLRLKQELANGTLKQENGKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITL RAIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQQGVTRTPRGDATVLVVGADDKVET RPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKAQEVTADNNQQAASGAQP EQSKS" gene 485761..486408 /gene="acrR" /locus_tag="b0464" /gene_synonym="ECK0458; JW0453; ybaH" /db_xref="EcoGene:EG12116" /db_xref="GeneID:945516" CDS 485761..486408 /gene="acrR" /locus_tag="b0464" /gene_synonym="ECK0458; JW0453; ybaH" /function="regulator; Drug/analog sensitivity" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0042493 - response to drug; GO:0006350 - transcription" /note="acrAB operon repressor" /codon_start=1 /transl_table=11 /product="transcriptional repressor" /protein_id="NP_414997.1" /db_xref="GI:16128448" /db_xref="ASAP:ABE-0001608" /db_xref="UniProtKB/Swiss-Prot:P0ACS9" /db_xref="EcoGene:EG12116" /db_xref="GeneID:945516" /translation="MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVT RGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVT EERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMT RRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE" gene 486536..489898 /gene="mscK" /locus_tag="b0465" /gene_synonym="aefA; ECK0459; JW0454; kefA; pnuH" /db_xref="EcoGene:EG14240" /db_xref="GeneID:945132" CDS 486536..489898 /gene="mscK" /locus_tag="b0465" /gene_synonym="aefA; ECK0459; JW0454; kefA; pnuH" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="mechanosensitive channel protein" /codon_start=1 /transl_table=11 /product="mechanosensitive channel protein, intermediate conductance, K+ regulated" /protein_id="NP_414998.1" /db_xref="GI:16128449" /db_xref="ASAP:ABE-0001613" /db_xref="UniProtKB/Swiss-Prot:P77338" /db_xref="EcoGene:EG14240" /db_xref="GeneID:945132" /translation="MTMFQYYKRSRHFVFSAFIAFVFVLLCQNTAFARASSNGDLPTK ADLQAQLDSLNKQKDLSAQDKLVQQDLTDTLATLDKIDRIKEETVQLRQKVAEAPEKM RQATAALTALSDVDNDEETRKILSTLSLRQLETRVAQALDDLQNAQNDLASYNSQLVS LQTQPERVQNAMYNASQQLQQIRSRLDGTDVGETALRPSQKVLMQAQQALLNAEIDQQ RKSLEGNTVLQDTLQKQRDYVTANSARLEHQLQLLQEAVNSKRLTLTEKTAQEAVSPD EAARIQANPLVKQELEINQQLSQRLITATENGNQLMQQNIKVKNWLERALQSERNIKE QIAVLKGSLLLSRILYQQQQTLPSADELENMTNRIADLRLEQFEVNQQRDALFQSDAF VNKLEEGHTNEVNSEVHDALLQVVDMRRELLDQLNKQLGNQLMMAINLQINQQQLMSV SKNLKSILTQQIFWVNSNRPMDWDWIKAFPQSLKDEFKSMKITVNWQKAWPAVFIAFL AGLPLLLIAGLIHWRLGWLKAYQQKLASAVGSLRNDSQLNTPKAILIDLIRALPVCLI ILAVGLILLTMQLNISELLWSFSKKLAIFWLVFGLCWKVLEKNGVAVRHFGMPEQQTS HWRRQIVRISLALLPIHFWSVVAELSPLHLMDDVLGQAMIFFNLLLIAFLVWPMCRES WRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLAGRWIETVYLVIIWNLLYQ TVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIALEQVNQQTLRITMLLM FALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTMGSLLFAIIASMVA WALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFGSLGVSWDKLQW LAAALSVGLGFGLQEIFGNFVSGLIILFERPVRIGDTVTIGSFSGTVSKIRIRATTIT DFDRKEVIIPNKAFVTERLINWSLTDTTTRLVIRLGVAYGSDLEKVRKVLLKAATEHP RVMHEPMPEVFFTAFGASTLDHELRLYVRELRDRSRTVDELNRTIDQLCRENDINIAF NQLEVHLHNEKGDEVTEVKRDYKGDDPTPAVG" repeat_region 489959..490056 /note="RIP43 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(490110..490271) /gene="ybaM" /locus_tag="b0466" /gene_synonym="ECK0460; JW0455" /db_xref="EcoGene:EG12830" /db_xref="GeneID:945144" CDS complement(490110..490271) /gene="ybaM" /locus_tag="b0466" /gene_synonym="ECK0460; JW0455" /codon_start=1 /transl_table=11 /product="DUF2496 family protein" /protein_id="NP_414999.1" /db_xref="GI:16128450" /db_xref="ASAP:ABE-0001616" /db_xref="UniProtKB/Swiss-Prot:P45807" /db_xref="EcoGene:EG12830" /db_xref="GeneID:945144" /translation="MSLENAPDDVKLAVDLIVLLEENQIPASTVLRALDIVKRDYEKK LTRDDEAEK" gene complement(490285..490812) /gene="priC" /locus_tag="b0467" /gene_synonym="ECK0461; JW0456" /db_xref="EcoGene:EG10765" /db_xref="GeneID:945071" CDS complement(490285..490812) /gene="priC" /locus_tag="b0467" /gene_synonym="ECK0461; JW0456" /function="factor; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication" /codon_start=1 /transl_table=11 /product="primosomal replication protein N''" /protein_id="NP_415000.1" /db_xref="GI:16128451" /db_xref="ASAP:ABE-0001619" /db_xref="UniProtKB/Swiss-Prot:P23862" /db_xref="EcoGene:EG10765" /db_xref="GeneID:945071" /translation="MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRAT TLQACLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAP PKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCR HALEKIENRLARLTR" gene 490882..491259 /gene="ybaN" /locus_tag="b0468" /gene_synonym="ECK0462; JW0457" /db_xref="EcoGene:EG12843" /db_xref="GeneID:945558" CDS 490882..491259 /gene="ybaN" /locus_tag="b0468" /gene_synonym="ECK0462; JW0457" /function="orf; Not classified" /note="putative gene 58" /codon_start=1 /transl_table=11 /product="DUF454 family inner membrane protein" /protein_id="NP_415001.1" /db_xref="GI:16128452" /db_xref="ASAP:ABE-0001625" /db_xref="UniProtKB/Swiss-Prot:P0AAR5" /db_xref="EcoGene:EG12843" /db_xref="GeneID:945558" /translation="MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSP RFHAWLLYRSWFGSYLRFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLL VILACLLFYMWRIPVIDEKQEKH" gene 491412..491963 /gene="apt" /locus_tag="b0469" /gene_synonym="ECK0463; JW0458" /db_xref="EcoGene:EG10051" /db_xref="GeneID:945113" CDS 491412..491963 /gene="apt" /locus_tag="b0469" /gene_synonym="ECK0463; JW0458" /EC_number="2.4.2.7" /function="enzyme; Salvage of nucleosides and nucleotides" /experiment="N-terminus verified by Edman degradation: PMID 9573169" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="adenine phosphoribosyltransferase" /protein_id="NP_415002.1" /db_xref="GI:16128453" /db_xref="ASAP:ABE-0001628" /db_xref="UniProtKB/Swiss-Prot:P69503" /db_xref="EcoGene:EG10051" /db_xref="GeneID:945113" /translation="MTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALS IDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDL EYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFD LGGEQRLEKQGITSYSLVPFPGH" gene 492092..494023 /gene="dnaX" /locus_tag="b0470" /gene_synonym="dnaZ; ECK0464; JW0459" /db_xref="EcoGene:EG10245" /db_xref="GeneID:945105" CDS 492092..494023 /gene="dnaX" /locus_tag="b0470" /gene_synonym="dnaZ; ECK0464; JW0459" /EC_number="2.7.7.7" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication" /note="DNA polymerase III, tau and gamma subunits; DNA elongation factor III" /codon_start=1 /transl_table=11 /product="DNA polymerase III/DNA elongation factor III, tau and gamma subunits" /protein_id="NP_415003.1" /db_xref="GI:16128454" /db_xref="ASAP:ABE-0001633" /db_xref="UniProtKB/Swiss-Prot:P06710" /db_xref="EcoGene:EG10245" /db_xref="GeneID:945105" /translation="MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFS GTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVE DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL SLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGI EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI GRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTQVPPQ PQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERL ASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPE LAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNR GAQQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNI QTLRRFFDAELDEESIRPI" gene 494076..494405 /gene="ybaB" /locus_tag="b0471" /gene_synonym="ECK0465; efbC; JW0460" /db_xref="EcoGene:EG11100" /db_xref="GeneID:945104" CDS 494076..494405 /gene="ybaB" /locus_tag="b0471" /gene_synonym="ECK0465; efbC; JW0460" /function="factor; DNA - replication, repair, restriction/modification" /codon_start=1 /transl_table=11 /product="DNA-binding protein, putative nucleoid-associated protein" /protein_id="NP_415004.1" /db_xref="GI:16128455" /db_xref="ASAP:ABE-0001636" /db_xref="UniProtKB/Swiss-Prot:P0A8B5" /db_xref="EcoGene:EG11100" /db_xref="GeneID:945104" /translation="MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKV TINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLP PGFKMPF" gene 494405..495010 /gene="recR" /locus_tag="b0472" /gene_synonym="ECK0466; JW0461" /db_xref="EcoGene:EG10834" /db_xref="GeneID:945100" CDS 494405..495010 /gene="recR" /locus_tag="b0472" /gene_synonym="ECK0466; JW0461" /function="putative enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006310 - DNA recombination; GO:0006281 - DNA repair" /note="recombination and repair" /codon_start=1 /transl_table=11 /product="gap repair protein" /protein_id="NP_415005.1" /db_xref="GI:16128456" /db_xref="ASAP:ABE-0001638" /db_xref="UniProtKB/Swiss-Prot:P0A7H6" /db_xref="EcoGene:EG10834" /db_xref="GeneID:945100" /translation="MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLA QALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQENGQICVVESPADIYAIEQTGQFS GRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF" gene 495120..496994 /gene="htpG" /locus_tag="b0473" /gene_synonym="ECK0467; JW0462" /db_xref="EcoGene:EG10461" /db_xref="GeneID:945099" CDS 495120..496994 /gene="htpG" /locus_tag="b0473" /gene_synonym="ECK0467; JW0462" /function="factor; Chaperones" /experiment="N-terminus verified by Edman degradation: PMID 9298646" /GO_process="GO:0006457 - protein folding" /note="chaperone Hsp90, heat shock protein C 62.5" /codon_start=1 /transl_table=11 /product="protein refolding molecular co-chaperone Hsp90, Hsp70-dependent; heat-shock protein; ATPase" /protein_id="NP_415006.1" /db_xref="GI:16128457" /db_xref="ASAP:ABE-0001642" /db_xref="UniProtKB/Swiss-Prot:P0A6Z3" /db_xref="EcoGene:EG10461" /db_xref="GeneID:945099" /translation="MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAAD KLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGT KSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG EYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDG ETVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTS LLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNV SREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFAN QEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELL RKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKAL TPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQKVPEVKY IFELNPDHVLVKRAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLVS " repeat_region 497001..497026 /note="REP44 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 497175..497819 /gene="adk" /locus_tag="b0474" /gene_synonym="dnaW; ECK0468; JW0463; plsA" /db_xref="EcoGene:EG10032" /db_xref="GeneID:945097" CDS 497175..497819 /gene="adk" /locus_tag="b0474" /gene_synonym="dnaW; ECK0468; JW0463; plsA" /EC_number="2.7.4.3" /function="enzyme; Purine ribonucleotide biosynthesis" /experiment="N-terminus verified by Edman degradation: PMID 3027060,8650159,9298646,9600841" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion; GO:0009152 - purine ribonucleotide biosynthetic process" /note="adenylate kinase activity; pleiotropic effects on glycerol-3-phosphate acyltransferase activity" /codon_start=1 /transl_table=11 /product="adenylate kinase" /protein_id="NP_415007.1" /db_xref="GI:16128458" /db_xref="ASAP:ABE-0001645" /db_xref="UniProtKB/Swiss-Prot:P69441" /db_xref="EcoGene:EG10032" /db_xref="GeneID:945097" /translation="MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSE LGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIN VDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQ EETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG" repeat_region 497916..497933 /note="REP45 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 498055..499017 /gene="hemH" /locus_tag="b0475" /gene_synonym="ECK0469; JW0464; popA; visA" /db_xref="EcoGene:EG10431" /db_xref="GeneID:947532" CDS 498055..499017 /gene="hemH" /locus_tag="b0475" /gene_synonym="ECK0469; JW0464; popA; visA" /EC_number="4.99.1.1" /function="enzyme; Biosynthesis of cofactors, carriers: Heme, porphyrin" /experiment="N-terminus verified by Edman degradation: PMID 8056770" /note="ferrochelatase: final enzyme of heme biosynthesis" /codon_start=1 /transl_table=11 /product="ferrochelatase" /protein_id="NP_415008.1" /db_xref="GI:16128459" /db_xref="ASAP:ABE-0001649" /db_xref="UniProtKB/Swiss-Prot:P23871" /db_xref="EcoGene:EG10431" /db_xref="GeneID:947532" /translation="MRQTKTGILLANLGTPDAPTPEAVKRYLKQFLSDRRVVDTSRLL WWPLLRGVILPLRSPRVAKLYASVWMEGGSPLMVYSRQQQQALAQRLPEMPVALGMSY GSPSLESAVDELLAEHVDHIVVLPLYPQFSCSTVGAVWDELARILARKRSIPGISFIR DYADNHDYINALANSVRASFAKHGEPDLLLLSYHGIPQRYADEGDDYPQRCRTTTREL ASALGMAPEKVMMTFQSRFGREPWLMPYTDETLKMLGEKGVGHIQVMCPGFAADCLET LEEIAEQNREVFLGAGGKKYEYIPALNATPEHIEMMANLVAAYR" gene complement(499014..499973) /gene="aes" /locus_tag="b0476" /gene_synonym="ECK0470; JW0465; ybaC" /db_xref="EcoGene:EG11101" /db_xref="GeneID:947514" CDS complement(499014..499973) /gene="aes" /locus_tag="b0476" /gene_synonym="ECK0470; JW0465; ybaC" /EC_number="3.1.1.-" /function="orf; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 9576853" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="acetyl esterase" /protein_id="NP_415009.1" /db_xref="GI:16128460" /db_xref="ASAP:ABE-0001651" /db_xref="UniProtKB/Swiss-Prot:P23872" /db_xref="EcoGene:EG11101" /db_xref="GeneID:947514" /translation="MKPENKLPVLDLISAEMKTVVNTLQPDLPPWPATGTIAEQRQYY TLERRFWNAGAPEMATRAYMVPTKYGQVETRLFCPQPDSPATLFYLHGGGFILGNLDT HDRIMRLLASYSQCTVIGIDYTLSPEARFPQAIEEIVAACCYFHQQAEDYQINMSRIG FAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDSVTRRLLGGVWDGLTQ QDLQMYEEAYLSNDADRESPYYCLFNNDLTREVPPCFIAGAEFDPLLDDSRLLYQTLA AHQQPCEFKLYPGTLHAFLHYSRMMKTADEALRDGAQFFTAQL" gene 500125..501429 /gene="gsk" /locus_tag="b0477" /gene_synonym="ECK0471; JW0466" /db_xref="EcoGene:EG11102" /db_xref="GeneID:946584" CDS 500125..501429 /gene="gsk" /locus_tag="b0477" /gene_synonym="ECK0471; JW0466" /EC_number="2.7.1.73" /function="enzyme; Salvage of nucleosides and nucleotides" /experiment="N-terminus verified by Edman degradation: PMID 7721718" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /note="inosine-guanosine kinase" /codon_start=1 /transl_table=11 /product="inosine/guanosine kinase" /protein_id="NP_415010.1" /db_xref="GI:16128461" /db_xref="ASAP:ABE-0001655" /db_xref="UniProtKB/Swiss-Prot:P0AEW6" /db_xref="EcoGene:EG11102" /db_xref="GeneID:946584" /translation="MKFPGKRKSKHYFPVNARDPLLQQFQPENETSAAWVVGIDQTLV DIEAKVDDEFIERYGLSAGHSLVIEDDVAEALYQELKQKNLITHQFAGGTIGNTMHNY SVLADDRSVLLGVMCSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLIGESG ERTFAISPGHMNQLRAESIPEDVIAGASALVLTSYLVRCKPGEPMPEATMKAIEYAKK YNVPVVLTLGTKFVIAENPQWWQQFLKDHVSILAMNEDEAEALTGESDPLLASDKALD WVDLVLCTAGPIGLYMAGFTEDEAKRKTQHPLLPGAIAEFNQYEFSRAMRHKDCQNPL RVYSHIAPYMGGPEKIMNTNGAGDGALAALLHDITANSYHRSNVPNSSKHKFTWLTYS SLAQVCKYANRVSYQVLNQHSPRLTRGLPEREDSLEESYWDR" repeat_region 501444..501527 /note="REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(501562..503238) /gene="ybaL" /locus_tag="b0478" /gene_synonym="ECK0472; JW0467; ylaA" /db_xref="EcoGene:EG12623" /db_xref="GeneID:946576" CDS complement(501562..503238) /gene="ybaL" /locus_tag="b0478" /gene_synonym="ECK0472; JW0467; ylaA" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="inner membrane putative NAD(P)-binding transporter" /protein_id="NP_415011.1" /db_xref="GI:16128462" /db_xref="ASAP:ABE-0001658" /db_xref="UniProtKB/Swiss-Prot:P39830" /db_xref="EcoGene:EG12623" /db_xref="GeneID:946576" /translation="MHHATPLITTIVGGLVLAFILGMLANKLRISPLVGYLLAGVLAG PFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKAIAIPGAIAQIAVATLL GMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLV MVLTLVLLPAVAGMMEQGDVGFATLAVDMGITIGKVIAFIAIMMLVGRRLVPWIMARS AATGSRELFTLSVLALALGVAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLP LRDAFAVLFFVSVGMLFDPLILIQQPLAVLATLAIILFGKSLAAFFLVRLFGHSQRTA LTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFALLEKYLA KTETLEEQTLEEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR TRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPD IEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLETPPAGEVVTG" gene complement(503476..504696) /gene="fsr" /locus_tag="b0479" /gene_synonym="ECK0473; JW0468" /db_xref="EcoGene:EG13268" /db_xref="GeneID:945119" CDS complement(503476..504696) /gene="fsr" /locus_tag="b0479" /gene_synonym="ECK0473; JW0468" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042493 - response to drug" /note="fosmidomycin resistance protein" /codon_start=1 /transl_table=11 /product="putative fosmidomycin efflux system protein" /protein_id="NP_415012.1" /db_xref="GI:16128463" /db_xref="ASAP:ABE-0001661" /db_xref="UniProtKB/Swiss-Prot:P52067" /db_xref="EcoGene:EG13268" /db_xref="GeneID:945119" /translation="MAMSEQPQPVAGAAASTTKARTSFGILGAISLSHLLNDMIQSLI LAIYPLLQSEFSLTFMQIGMITLTFQLASSLLQPVVGYWTDKYPMPWSLPIGMCFTLS GLVLLALAGSFGAVLLAAALVGTGSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFG SSLGPLLAAVIIAPYGKGNVAWFVLAALLAIVVLAQISRWYSAQHRMNKGKPKATIIN PLPRNKVVLAVSILLILIFSKYFYMASISSYYTFYLMQKFGLSIQNAQLHLFAFLFAV AAGTVIGGPVGDKIGRKYVIWGSILGVAPFTLILPYASLHWTGVLTVIIGFILASAFS AILVYAQELLPGRIGMVSGLFFGFAFGMGGLGAAVLGLIADHTSIELVYKICAFLPLL GMLTIFLPDNRHKD" gene 504914..506566 /gene="ushA" /locus_tag="b0480" /gene_synonym="ECK0474; JW0469" /db_xref="EcoGene:EG11060" /db_xref="GeneID:947331" CDS 504914..506566 /gene="ushA" /locus_tag="b0480" /gene_synonym="ECK0474; JW0469" /EC_number="3.6.1.45" /function="enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009226 - nucleotide-sugar biosynthetic process" /note="UDP-sugar hydrolase (5'-nucleotidase)" /codon_start=1 /transl_table=11 /product="bifunctional UDP-sugar hydrolase/5'-nucleotidase" /protein_id="NP_415013.1" /db_xref="GI:16128464" /db_xref="ASAP:ABE-0001668" /db_xref="UniProtKB/Swiss-Prot:P07024" /db_xref="EcoGene:EG11060" /db_xref="GeneID:947331" /translation="MKLLQRGVALALLTTFTLASETALAYEQDKTYKITVLHTNDHHG HFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFR GMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKR QDLKIAVIGLTTDDTAKIGNPEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHM GHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCK PDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVTWEDGKSERVL YTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGDRDKVRFVQTNMGRLILAA QMDRTGADFAVMSGGGIRDSIEAGDISYKNVLKVQPFGNVVVYADMTGKEVIDYLTAV AQMKPDSGAYPQFANVSFVAKDGKLNDLKIKGEPVDPAKTYRMATLNFNATGGDGYPR LDNKPGYVNTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSWQ" repeat_region 506576..506595 /note="REP47 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(506603..507082) /gene="ybaK" /locus_tag="b0481" /gene_synonym="ECK0475; JW0470; proX" /db_xref="EcoGene:EG12454" /db_xref="GeneID:947083" CDS complement(506603..507082) /gene="ybaK" /locus_tag="b0481" /gene_synonym="ECK0475; JW0470; proX" /codon_start=1 /transl_table=11 /product="Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase" /protein_id="NP_415014.1" /db_xref="GI:16128465" /db_xref="ASAP:ABE-0001670" /db_xref="UniProtKB/Swiss-Prot:P0AAR3" /db_xref="EcoGene:EG12454" /db_xref="GeneID:947083" /translation="MTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQV YKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAKKVEMADPMVAQRSTGYLVGG ISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARRD" gene 507204..507287 /gene="chiX" /locus_tag="b4585" /gene_synonym="ECK4396; er13; micM; rybC; sroB" /db_xref="EcoGene:EG31175" /db_xref="GeneID:5061500" ncRNA 507204..507287 /ncRNA_class="antisense_RNA" /gene="chiX" /locus_tag="b4585" /gene_synonym="ECK4396; er13; micM; rybC; sroB" /product="sRNA antisense regulator of OM chitoporin ChiP(YbfM), Hfq-dependent" /db_xref="EcoGene:EG31175" /db_xref="GeneID:5061500" gene complement(507286..508080) /gene="ybaP" /locus_tag="b0482" /gene_synonym="ECK0476; JW0471" /db_xref="EcoGene:EG13244" /db_xref="GeneID:945124" CDS complement(507286..508080) /gene="ybaP" /locus_tag="b0482" /gene_synonym="ECK0476; JW0471" /note="putative ligase" /codon_start=1 /transl_table=11 /product="TraB family protein" /protein_id="NP_415015.1" /db_xref="GI:16128466" /db_xref="ASAP:ABE-0001673" /db_xref="UniProtKB/Swiss-Prot:P77301" /db_xref="EcoGene:EG13244" /db_xref="GeneID:945124" /translation="MDLLYRVKTLWAALRGNHYTWPAIDITLPGNRHFHLIGSIHMGS HDMAPLPTRLLKKLKNADALIVEADVSTSDTPFANLPACEALEERISEEQLQNLQHIS QEMGISPSLFSTQPLWQIAMVLQATQAQKLGLRAEYGIDYQLLQAAKQQHKPVIELEG AENQIAMLLQLPDKGLALLDDTLTHWHTNARLLQQMMSWWLNAPPQNNDITLPNTFSQ SLYDVLMHQRNLAWRDKLRAMPPGRYVVAVGALHLYGEGNLPQMLR" gene 508218..508559 /gene="ybaQ" /locus_tag="b0483" /gene_synonym="ECK0477; JW0472" /db_xref="EcoGene:EG13245" /db_xref="GeneID:948800" CDS 508218..508559 /gene="ybaQ" /locus_tag="b0483" /gene_synonym="ECK0477; JW0472" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator" /protein_id="NP_415016.4" /db_xref="GI:90111140" /db_xref="ASAP:ABE-0001677" /db_xref="UniProtKB/Swiss-Prot:P0A9T6" /db_xref="EcoGene:EG13245" /db_xref="GeneID:948800" /translation="MKQATRKPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSAL INNNRKLTTEMAFRLAKVFDTTVDFWLNLQAAVDLWEVENNMRTQEELGRIETVAEYL ARREERAKKVA" repeat_region 508582..508817 /note="REP48 (repetitive extragenic palindromic) element; contains 5 REP sequences" gene complement(508875..511379) /gene="copA" /locus_tag="b0484" /gene_synonym="ECK0478; JW0473; ybaR" /db_xref="EcoGene:EG13246" /db_xref="GeneID:946106" CDS complement(508875..511379) /gene="copA" /locus_tag="b0484" /gene_synonym="ECK0478; JW0473; ybaR" /EC_number="3.6.3.4" /function="putative enzyme; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism" /codon_start=1 /transl_table=11 /product="copper transporter" /protein_id="NP_415017.1" /db_xref="GI:16128468" /db_xref="ASAP:ABE-0001681" /db_xref="UniProtKB/Swiss-Prot:Q59385" /db_xref="EcoGene:EG13246" /db_xref="GeneID:946106" /translation="MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSITEAHVT GTASAEQLIETIKQAGYDASVSHPKAKPLAESSIPSEALTAVSEALPAATADDDDSQQ LLLSGMSCASCVTRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYG AEAIEDDAKRRERQQETAVATMKRFRWQAIVALAVGIPVMVWGMIGDNMMVTADNRSL WLVIGLITLAVMVFAGGHFYRSAWKSLLNGAATMDTLVALGTGVAWLYSMSVNLWPQW FPMEARHLYYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARLVTDEGEK SVPLAEVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGEPIPQQKGEGDSVHAGT VVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALV SAAIWYFFGPAPQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDA DALQRASTLDTVVFDKTGTLTEGKPQVVAVKTFADVDEAQALRLAAALEQGSSHPLAR AILDKAGDMQLPQVNGFRTLRGLGVSGEAEGHALLLGNQALLNEQQVGTKAIEAEITA QASQGATPVLLAVDGKAVALLAVRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANA IAKEAGIDEVIAGVLPDGKAEAIKHLQSEGRQVAMVGDGINDAPALAQADVGIAMGGG SDVAIETAAITLMRHSLMGVADALAISRATLHNMKQNLLGAFIYNSIGIPVAAGILWP FTGTLLNPVVAGAAMALSSITVVSNANRLLRFKPKE" gene 511641..512573 /gene="glsA" /locus_tag="b0485" /gene_synonym="ECK0479; glsA1; JW0474; ybaS" /db_xref="EcoGene:EG13247" /db_xref="GeneID:946187" CDS 511641..512573 /gene="glsA" /locus_tag="b0485" /gene_synonym="ECK0479; glsA1; JW0474; ybaS" /function="enzyme; l-glutamine catabolism" /GO_process="GO:0009063 - cellular amino acid catabolic process" /note="putative glutaminase" /codon_start=1 /transl_table=11 /product="glutaminase 1" /protein_id="NP_415018.1" /db_xref="GI:16128469" /db_xref="ASAP:ABE-0001688" /db_xref="UniProtKB/Swiss-Prot:P77454" /db_xref="EcoGene:EG13247" /db_xref="GeneID:946187" /translation="MLDANKLQQAVDQAYTQFHSLNGGQNADYIPFLANVPGQLAAVA IVTCDGNVYSAGDSDYRFALESISKVCTLALALEDVGPQAVQDKIGADPTGLPFNSVI ALELHGGKPLSPLVNAGAIATTSLINAENVEQRWQRILHIQQQLAGEQVALSDEVNQS EQTTNFHNRAIAWLLYSAGYLYCDAMEACDVYTRQCSTLLNTIELATLGATLAAGGVN PLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGI AAFSPPLDEDGNSVRGQKMVASVAKQLGYNVFKG" gene 512576..513868 /gene="ybaT" /locus_tag="b0486" /gene_synonym="ECK0480; JW0475" /db_xref="EcoGene:EG13248" /db_xref="GeneID:945363" CDS 512576..513868 /gene="ybaT" /locus_tag="b0486" /gene_synonym="ECK0480; JW0475" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009063 - cellular amino acid catabolic process" /note="putative amino acid/amine transport protein" /codon_start=1 /transl_table=11 /product="putative amino acid transporter" /protein_id="NP_415019.1" /db_xref="GI:16128470" /db_xref="ASAP:ABE-0001690" /db_xref="UniProtKB/Swiss-Prot:P77400" /db_xref="EcoGene:EG13248" /db_xref="GeneID:945363" /translation="MMNTEGNNGNKPLGLWNVVSIGIGAMVGAGIFALLGQAALLMEA STWVAFAFGGIVAMFSGYAYARLGASYPSNGGIIDFFRRGLGNGVFSLALSLLYLLTL AVSIAMVARAFGAYAVQFLHEGSQEEHLILLYALGIIAVMTLFNSLSNHAVGRLEVIL VGIKMMILLLLIIAGVWSLQPAHISVSAPPSSGAFFSCIGITFLAYAGFGMMANAADK VKDPQVIMPRAFLVAIGVTTLLYISLALVLLSDVSALELEKYADTAVAQAASPLLGHV GYVIVVIGALLATASAINANLFAVFNIMDNMGSERELPKLMNKSLWRQSTWGNIIVVV LIMLMTAALNLGSLASVASATFLICYLAVFVVAIRLRHDIHASLPILIVGTLVMLLVI VGFIYSLWSQGSRALIWIIGSLLLSLIVAMVMKRNKTV" gene 513993..514400 /gene="cueR" /locus_tag="b0487" /gene_synonym="ECK0481; JW0476; ybbI" /db_xref="EcoGene:EG13256" /db_xref="GeneID:945332" CDS 513993..514400 /gene="cueR" /locus_tag="b0487" /gene_synonym="ECK0481; JW0476; ybbI" /function="putative transport; Not classified" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="copper-responsive regulon transcriptional regulator" /protein_id="NP_415020.1" /db_xref="GI:16128471" /db_xref="ASAP:ABE-0001693" /db_xref="UniProtKB/Swiss-Prot:P0A9G4" /db_xref="EcoGene:EG13256" /db_xref="GeneID:945332" /translation="MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHL NELTLLRQARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMR DQLLALANACPGDDSADCPIIENLSGCCHHRAG" gene complement(514401..514859) /gene="ybbJ" /locus_tag="b0488" /gene_synonym="ECK0482; JW5065" /db_xref="EcoGene:EG13257" /db_xref="GeneID:945126" CDS complement(514401..514859) /gene="ybbJ" /locus_tag="b0488" /gene_synonym="ECK0482; JW5065" /codon_start=1 /transl_table=11 /product="inner membrane protein; stimulator of the QmcA suppressor of ftsH-htpX" /protein_id="NP_415021.2" /db_xref="GI:145698226" /db_xref="ASAP:ABE-0001695" /db_xref="UniProtKB/Swiss-Prot:P0AAS3" /db_xref="EcoGene:EG13257" /db_xref="GeneID:945126" /translation="MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGL VVWLVPLGWEWQGVMFAILTLLAAWLWWKWLSRRVREQKHSDSHLNQRGQQLIGRRFV LESPLVNGRGHMRVGDSSWPVSASEDLGAGTHVEVIAIEGITLHIRAVSS" gene complement(514856..515773) /gene="qmcA" /locus_tag="b0489" /gene_synonym="ECK0483; JW0478; ybbK" /db_xref="EcoGene:EG13258" /db_xref="GeneID:947257" CDS complement(514856..515773) /gene="qmcA" /locus_tag="b0489" /gene_synonym="ECK0483; JW0478; ybbK" /function="putative enzyme; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /note="putative protease" /codon_start=1 /transl_table=11 /product="PHB domain membrane-anchored putative protease" /protein_id="NP_415022.1" /db_xref="GI:16128473" /db_xref="ASAP:ABE-0001697" /db_xref="UniProtKB/Swiss-Prot:P0AA53" /db_xref="EcoGene:EG13258" /db_xref="GeneID:947257" /translation="MLIFIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPG LSLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVS NLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEATNPWGIKVTRIEIR DVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQILKAEGERQSA FLQAEARERSAEAEARATKMVSEAIASGDIQAVNYFVAQKYTEALQQIGSSSNSKVVM MPLEASSLMGSIAGIAELVKDSANKRTQP" gene 515919..516596 /gene="fetA" /locus_tag="b0490" /gene_synonym="ECK0484; JW0479; ybbL" /db_xref="EcoGene:EG13259" /db_xref="GeneID:946990" CDS 515919..516596 /gene="fetA" /locus_tag="b0490" /gene_synonym="ECK0484; JW0479; ybbL" /function="transport; Transport of small molecules: Cations" /GO_component="GO:0005737 - cytoplasm" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="iron export ABC transporter ATPase; peroxide resistance protein" /protein_id="NP_415023.1" /db_xref="GI:16128474" /db_xref="ASAP:ABE-0001703" /db_xref="UniProtKB/Swiss-Prot:P77279" /db_xref="EcoGene:EG13259" /db_xref="GeneID:946990" /translation="MQENSPLLQLQNVGYLAGDAKILNNINFSLRAGEFKLITGPSGC GKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEIYRQQVSYCAQTPTLFGDTVYDNLI FPWQIRNRQPDPAIFLDFLERFALPDSILTKNIAELSGGEKQRISLIRNLQFMPKVLL LDEITSALDESNKHNVNEMIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQ EARYELA" gene 516583..517362 /gene="fetB" /locus_tag="b0491" /gene_synonym="ECK0485; JW5066; ybbM" /db_xref="EcoGene:EG13260" /db_xref="GeneID:945137" CDS 516583..517362 /gene="fetB" /locus_tag="b0491" /gene_synonym="ECK0485; JW5066; ybbM" /function="transport; Transport of small molecules: Cations" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042493 - response to drug" /note="putative metal resistance protein" /codon_start=1 /transl_table=11 /product="iron export ABC transporter permease; peroxide resistance protein" /protein_id="NP_415024.4" /db_xref="GI:90111141" /db_xref="ASAP:ABE-0001705" /db_xref="UniProtKB/Swiss-Prot:P77307" /db_xref="EcoGene:EG13260" /db_xref="GeneID:945137" /translation="MNSHNITNESLALALMLVVVAILISHKEKLALEKDILWSVGRAI IQLIIVGYVLKYIFSVDDASLTLLMVLFICFNAAWNAQKRSKYIAKAFISSFIAITVG AGITLAVLILSGSIEFIPMQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKL SLGATPKQASAILIRDSIRAALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQ IMVTFMLLSTASLSTIIACYLTYRKFYNSRHQLVVTQLKKK" repeat_region 517369..517394 /note="REP49 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(517425..518279) /gene="ybbN" /locus_tag="b0492" /gene_synonym="ECK0486; JW5067" /db_xref="EcoGene:EG13261" /db_xref="GeneID:947119" CDS complement(517425..518279) /gene="ybbN" /locus_tag="b0492" /gene_synonym="ECK0486; JW5067" /function="putative enzyme; Not classified" /note="putative thioredoxin-like protein" /codon_start=1 /transl_table=11 /product="DnaK co-chaperone, thioredoxin-like protein" /protein_id="NP_415025.4" /db_xref="GI:90111142" /db_xref="ASAP:ABE-0001707" /db_xref="UniProtKB/Swiss-Prot:P77395" /db_xref="EcoGene:EG13261" /db_xref="GeneID:947119" /translation="MSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPI LESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAI RALLDKVLPREEELKAQQAMQLMQESNYTDALPLLKDAWQLSNQNGEIGLLLAETLIA LNRSEDAEAVLKTIPLQDQDTRYQGLVAQIELLKQAADTPEIQQLQQQVAENPEDAAL ATQLALQLHQVGRNEEALELLFGHLRKDLTAADGQTRKTFQEILAALGTGDALASKYR RQLYALLY" gene complement(518340..519149) /gene="ybbO" /locus_tag="b0493" /gene_synonym="ECK0487; JW0482" /db_xref="EcoGene:EG13262" /db_xref="GeneID:945337" CDS complement(518340..519149) /gene="ybbO" /locus_tag="b0493" /gene_synonym="ECK0487; JW0482" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_415026.1" /db_xref="GI:16128477" /db_xref="ASAP:ABE-0001709" /db_xref="UniProtKB/Swiss-Prot:P0AFP4" /db_xref="EcoGene:EG13262" /db_xref="GeneID:945337" /translation="MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLA GCRKPDDVERMNSMGFTGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGP LSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYA ASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARF TLGPEAVVDKVRHAFISEKPKMRYPVTLVTWAVMVLKRLLPGRVMDKILQG" gene complement(519139..519765) /gene="tesA" /locus_tag="b0494" /gene_synonym="apeA; ECK0488; JW0483; pldC" /db_xref="EcoGene:EG11542" /db_xref="GeneID:945127" CDS complement(519139..519765) /gene="tesA" /locus_tag="b0494" /gene_synonym="apeA; ECK0488; JW0483; pldC" /EC_number="3.1.1.5" /EC_number="3.1.2.-" /function="enzyme; Fatty acid and phosphatidic acid biosynthesis" /GO_component="GO:0042597 - periplasmic space" /note="acyl-CoA thioesterase I; also functions as protease I" /codon_start=1 /transl_table=11 /product="acyl-CoA thioesterase 1 and protease I and lysophospholipase L1" /protein_id="NP_415027.1" /db_xref="GI:16128478" /db_xref="ASAP:ABE-0001713" /db_xref="UniProtKB/Swiss-Prot:P0ADA1" /db_xref="EcoGene:EG11542" /db_xref="GeneID:945127" /translation="MMNFNNVFRWHLPFLFLVLLTFRAAAADTLLILGDSLSAGYRMS ASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGL RGFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDV PLLPFFMEEVYLKPQWMQDDGIHPNRDAQPFIADWMAKQLQPLVNHDS" gene 519733..520419 /gene="ybbA" /locus_tag="b0495" /gene_synonym="ECK0489; JW0484" /db_xref="EcoGene:EG11657" /db_xref="GeneID:945122" CDS 519733..520419 /gene="ybbA" /locus_tag="b0495" /gene_synonym="ECK0489; JW0484" /function="putative transport; Not classified" /GO_component="GO:0005737 - cytoplasm" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="putative ABC transporter ATPase" /protein_id="NP_415028.1" /db_xref="GI:16128479" /db_xref="ASAP:ABE-0001717" /db_xref="UniProtKB/Swiss-Prot:P0A9T8" /db_xref="EcoGene:EG11657" /db_xref="GeneID:945122" /translation="MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALVGE SGSGKSTLLAILAGLDDGSSGEVSLVGQPLHNMDEEARAKLRAKHVGFVFQSFMLIPT LNALENVELPALLRGESSAESRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIMVTHDLQLAARCDRCLR LVNGQLQEEA" gene 520416..522830 /gene="ybbP" /locus_tag="b0496" /gene_synonym="ECK0490; JW0485" /db_xref="EcoGene:EG13263" /db_xref="GeneID:945118" CDS 520416..522830 /gene="ybbP" /locus_tag="b0496" /gene_synonym="ECK0490; JW0485" /function="putative enzyme; Not classified" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="putative ABC transporter permease" /protein_id="NP_415029.1" /db_xref="GI:16128480" /db_xref="ASAP:ABE-0001720" /db_xref="UniProtKB/Swiss-Prot:P77504" /db_xref="EcoGene:EG13263" /db_xref="GeneID:945118" /translation="MIARWFWREWRSPSLLIVWLALSLAVACVLALGNISDRMEKGLS QQSREFMAGDRALRSSREVPQAWLEEAQKRGLKVGKQLTFATMTFAGDTPQLANVKAV DDIYPMYGDLQTNPPGLKPQAGSVLLAPRLMALLNLKTGDTIDVGDATLRIAGEVIQE PDSGFNPFQMAPRLMMNLADVDKTGAVQPGSRVTWRYKFGGNENQLDGYEKWLLPQLK PEQRWYGLEQDEGALGRSMERSQQFLLLSALLTLLLAVAAVAVAMNHYCRSRYDLVAI LKTLGAGRAQLRKLIVGQWLMVLTLSAVTGGAIGLLFENVLMVLLKPVLPAALPPASL WPWLWALGTMTVISLLVGLRPYRLLLATQPLRVLRNDVVANVWPLKFYLPIVSVVVVL LLAGLMGGSMLLWAVLAGAVVLALLCGVLGWMLLNVLRRMTLKSLPLRLAVSRLLRQP WSTLSQLSAFSLSFMLLALLLVLRGDLLDRWQQQLPPESPNYFLINIATEQVAPLKAF LAEHQIVPESFYPVVRARLTAINDKPTEGNEDEALNRELNLTWQNTRPDHNPIVAGNW PPKADEVSMEEGLAKRLNVALGDTVTFMGDTQEFRAKVTSLRKVDWESLRPNFYFIFP EGALDGQPQSWLTSFRWENGNGMLTQLNRQFPTISLLDIGAILKQVGQVLEQVSRALE VMVVLVTACGMLLLLAQVQVGMRQRHQELVVWRTLGAGKKLLRTTLWCEFAMLGFVSG LVAAIGAETALAVLQAKVFDFPWEPDWRLWIVLPCSGALLLSLFGGWLGARLVKGKAL FRQFAG" gene 523261..527541 /gene="rhsD" /locus_tag="b0497" /gene_synonym="ECK0491; JW0486" /db_xref="EcoGene:EG10849" /db_xref="GeneID:945116" CDS 523261..527541 /gene="rhsD" /locus_tag="b0497" /gene_synonym="ECK0491; JW0486" /note="rhsD protein in rhs element" /codon_start=1 /transl_table=11 /product="Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor" /protein_id="NP_415030.1" /db_xref="GI:16128481" /db_xref="ASAP:ABE-0001724" /db_xref="UniProtKB/Swiss-Prot:P16919" /db_xref="EcoGene:EG10849" /db_xref="GeneID:945116" /translation="MSGKPAARQGDMTQYGGPIVQGSAGVRIGAPTGVACSVCPGGMT SGNPVNPLLGAKVLPGETDLALPGPLPFILSRTYSSYRTKTPAPVGVFGPGWKAPSDI RLQLRDDGLILNDNGGRSIHFEPLLPGEAVYSRSESMWLVRGGKAAQPDGHTLARLWG ALPPDIRLSPHLYLATNSAQGPWWILGWSERVPGAEDVLPAPLPPYRVLTGMADRFGR TLTYRREAAGDLAGEITGVTDGAGREFRLVLTTQAQRAEEARTSSLSSSDSSRPLSAS AFPDTLPGTEYGPDRGIRLSAVWLMHDPAYPESLPAAPLVRYTYTEAGELLAVYDRSN TQVRAFTYDAQHPGRMVAHRYAGRPEMRYRYDDTGRVVEQLNPAGLSYRYLYEQDRIT VTDSLNRREVLHTEGGAGLKRVVKKELADGSVTRSGYDAAGRLTAQTDAAGRRTEYGL NVVSGDITDITTPDGRETKFYYNDGNQLTAVVSPDGLESRREYDEPGRLVSETSRSGE TVRYRYDDAHSELPATTTDATGSTRQMTWSRYGQLLAFTDCSGYQTRYEYDRFGQMTA VHREEGISLYRRYDNRGRLTSVKDAQGRETRYEYNAAGDLTAVITPDGNRSETQYDAW GKAVSTTQGGLTRSMEYDAAGRVISLTNENGSHSVFSYDALDRLVQQGGFDGRTQRYH YDLTGKLTQSEDEGLVILWYYDESDRITHRTVNGEPAEQWQYDGHGWLTDISHLSEGH RVAVHYGYDDKGRLTGECQTVENPETGELLWQHETKHAYNEQGLANRVTPDSLPPVEW LTYGSGYLAGMKLGGTPLVEYTRDRLHRETVRSFGSMAGSNAAYELTSTYTPAGQLQS QHLNSLVYDRDYGWSDNGDLVRISGPRQTREYGYSATGRLESVRTLAPDLDIRIPYAT DPAGNRLPDPELHPDSTLTVWPDNRIAEDAHYVYRHDEYGRLTEKTDRIPAGVIRTDD ERTHHYHYDSQHRLVFYTRIQHGEPLVESRYLYDPLGRRMAKRVWRRERDLTGWMSLS RKPEVTWYGWDGDRLTTVQTDTTRIQTVYEPGSFTPLIRVETENGEREKAQRRSLAET LQQEGSENGHGVVFPAELVRLLDRLEEEIRADRVSSESRAWLAQCGLTVEQLARQVEP EYTPARKAHLYHCDHRGLPLALISEDGNTAWSAEYDEWGNQLNEENPHHVYQPYRLPG QQHDEESGLYYNRHRYYDPLQGRYITQDPMGLKGGWNLYQYPLNPLQQIDPMGLLQTW DDARSGACTGGVCGVLSRIIGPSKFDSTADAALDALKETQNRSLCNDMEYSGIVCKDT NGKYFASKAETDNLRKESYPLKRKCPTGTDRVAAYHTHGADSHGDYVDEFFSSSDKNL VRSKDNNLEAFYLATPDGRFEALNNKGEYIFIRNSVPGLSSVCIPYHD" gene 527581..527949 /gene="ybbC" /locus_tag="b0498" /gene_synonym="ECK0492; JW0487" /db_xref="EcoGene:EG11769" /db_xref="GeneID:945115" CDS 527581..527949 /gene="ybbC" /locus_tag="b0498" /gene_synonym="ECK0492; JW0487" /codon_start=1 /transl_table=11 /product="putative immunity protein" /protein_id="NP_415031.1" /db_xref="GI:16128482" /db_xref="ASAP:ABE-0001726" /db_xref="UniProtKB/Swiss-Prot:P33668" /db_xref="EcoGene:EG11769" /db_xref="GeneID:945115" /translation="MKYSSIFSMLSFFILFACNETAVYGSDENIIFMRYVEKLHLDKY SVKNTVKTETMAIQLAEIYVRYRYGERIAEEEKPYLITELPDSWVVEGAKLPYEVAGG VFIIEINKKNGCVLNFLHSK" gene 527952..528659 /gene="rhsH" /locus_tag="b0499" /gene_synonym="ECK0493; JW0488; ylbH" /pseudo /db_xref="EcoGene:EG14327" /db_xref="GeneID:945114" CDS 527952..528659 /gene="rhsH" /locus_tag="b0499" /gene_synonym="ECK0493; JW0488; ylbH" /note="pseudogene, Rhs family C-terminal fragment with unique putative toxin domain" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0001729" /db_xref="UniProtKB/Swiss-Prot:P77759" /db_xref="EcoGene:EG14327" /db_xref="GeneID:945114" gene 528640..529130 /gene="ybbD" /locus_tag="b0501" /gene_synonym="ECK0494; JW0489" /pseudo /db_xref="EcoGene:EG11770" /db_xref="GeneID:945133" CDS 528640..529130 /gene="ybbD" /locus_tag="b0501" /gene_synonym="ECK0494; JW0489" /note="pseudogene" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0001731" /db_xref="UniProtKB/Swiss-Prot:P33669" /db_xref="EcoGene:EG11770" /db_xref="GeneID:945133" gene 529500..529592 /gene="ylbI" /locus_tag="b4632" /gene_synonym="ECK4441" /pseudo /db_xref="EcoGene:EG14349" /db_xref="GeneID:5625558" CDS 529500..529592 /gene="ylbI" /locus_tag="b4632" /gene_synonym="ECK4441" /note="pseudogene, Rhs family protein" /pseudo /codon_start=1 /transl_table=11 /db_xref="EcoGene:EG14349" /db_xref="GeneID:5625558" gene complement(529595..530016) /gene="ylbG" /locus_tag="b0502" /gene_synonym="ECK0495; JW5880" /pseudo /db_xref="EcoGene:EG14285" /db_xref="GeneID:946803" CDS complement(join(529595..529660,529660..530016)) /gene="ylbG" /locus_tag="b0502" /gene_synonym="ECK0495; JW5880" /note="pseudogene, DNA-binding transcriptional regulator homology" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0001736" /db_xref="UniProtKB/Swiss-Prot:P77688" /db_xref="EcoGene:EG14285" /db_xref="GeneID:946803" gene complement(530132..531226) /gene="mnmH" /locus_tag="b0503" /gene_synonym="ECK0496; JW0491; selE; selU; ybbB" /db_xref="EcoGene:EG11768" /db_xref="GeneID:947063" CDS complement(530132..531226) /gene="mnmH" /locus_tag="b0503" /gene_synonym="ECK0496; JW0491; selE; selU; ybbB" /function="enzyme; tRNA modification" /note="putative capsule anchoring protein" /codon_start=1 /transl_table=11 /product="tRNA 2-selenouridine synthase, selenophosphate-dependent" /protein_id="NP_415036.1" /db_xref="GI:16128487" /db_xref="ASAP:ABE-0001740" /db_xref="UniProtKB/Swiss-Prot:P33667" /db_xref="EcoGene:EG11768" /db_xref="GeneID:947063" /translation="MQERHTEQDYRALLIADTPIIDVRAPIEFEHGAMPAAINLPLMN NDERAAVGTCYKQQGSDAALALGHKLVAGEIRQQRMDAWRAACLQNPQGILCCARGGQ RSHIVQSWLHAAGIDYPLVEGGYKALRQTAIQATIELAQKPIVLIGGCTGSGKTLLVQ QQPNGVDLEGLARHRGSAFGRTLQPQLSQASFENLLAAEMLKTDARQNLRLWVLEDES RMIGSNHLPECLRERMTQAAIAVVEDPFEIRLERLNEEYFLRMHHDFTHAYGDEQGWQ EYCEYLHHGLSAIKRRLGLQRYNELAARLDAALTTQLTTGSTDGHLAWLVPLLEEYYD PMYRYQLEKKAEKVVFRGEWAEVAEWVKAR" gene complement(531295..532221) /gene="allS" /locus_tag="b0504" /gene_synonym="ECK0497; glxA1; JW0492; ybbS" /db_xref="EcoGene:EG13267" /db_xref="GeneID:945139" CDS complement(531295..532221) /gene="allS" /locus_tag="b0504" /gene_synonym="ECK0497; glxA1; JW0492; ybbS" /function="regulator; Purine nitrogen catabolism" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="allD operon transcriptional activator" /protein_id="NP_415037.1" /db_xref="GI:16128488" /db_xref="ASAP:ABE-0001742" /db_xref="UniProtKB/Swiss-Prot:P0ACR0" /db_xref="EcoGene:EG13267" /db_xref="GeneID:945139" /translation="MFDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENT GVALFFRTTRSVTLTAAGEHLLSQARDWLSWLESMPSELQQVNDGVERQVNIVINNLL YNPQAVAQLLAWLNERYPFTQFHISRQIYMGVWDSLLYEGFSLAIGVTGTEALANTFS LDPLGSVQWRFVMAADHPLANVEEPLTEAQLRRFPAVNIEDSARTLTKRVAWRLPGQK EIIVPDMETKIAAHLAGVGIGFLPKSLCQSMIDNQQLVSRVIPTMRPPSPLSLAWRKF GSGKAVEDIVTLFTQRRPEISGFLEIFGNPRS" gene 532451..532933 /gene="allA" /locus_tag="b0505" /gene_synonym="ECK0498; glxA2; JW0493; ybbT" /db_xref="EcoGene:EG13615" /db_xref="GeneID:945141" CDS 532451..532933 /gene="allA" /locus_tag="b0505" /gene_synonym="ECK0498; glxA2; JW0493; ybbT" /EC_number="4.3.2.3" /function="enzyme; Purine nitrogen catabolism" /GO_process="GO:0009442 - allantoin assimilation pathway; GO:0006807 - nitrogen compound metabolic process" /codon_start=1 /transl_table=11 /product="ureidoglycolate lyase, releasing urea" /protein_id="NP_415038.1" /db_xref="GI:16128489" /db_xref="ASAP:ABE-0001747" /db_xref="UniProtKB/Swiss-Prot:P77731" /db_xref="EcoGene:EG13615" /db_xref="GeneID:945141" /translation="MKLQVLPLSQEAFSAYGDVIETQQRDFFHINNGLVERYHDLALV EILEQDCTLISINRAQPANLPLTIHELERHPLGTQAFIPMKGEVFVVVVALGDDKPDL STLRAFITNGEQGVNYHRNVWHHPLFAWQRVTDFLTIDRGGSDNCDVESIPEQELCFA " gene 533011..533826 /gene="allR" /locus_tag="b0506" /gene_synonym="ECK0499; gclR; glxA3; JW0494; ybbU" /db_xref="EcoGene:EG13616" /db_xref="GeneID:945333" CDS 533011..533826 /gene="allR" /locus_tag="b0506" /gene_synonym="ECK0499; gclR; glxA3; JW0494; ybbU" /function="regulator; Purine nitrogen catabolism" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="glyoxylate-inducible transcriptional repressor of all and gcl operons" /protein_id="NP_415039.1" /db_xref="GI:16128490" /db_xref="ASAP:ABE-0001750" /db_xref="UniProtKB/Swiss-Prot:P0ACN4" /db_xref="EcoGene:EG13616" /db_xref="GeneID:945333" /translation="MTEVRRRGRPGQAEPVAQKGAQALERGIAILQYLEKSGGSSSVS DISLNLDLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVFNVGAAYIHNRDVLSVA GPFMRRLMLLSGETVNVAIRNGNEAVLIGQLECKSMVRMCAPLGSRLPLHASGAGKAL LYPLAEEELMSIILQTGLQQFTPTTLVDMPTLLKDLEQARELGYTVDKEEHVVGLNCI ASAIYDDVGSVVAAISISGPSSRLTEDRFVSQGELVRDTARDISTALGLKAHP" gene 533916..535697 /gene="gcl" /locus_tag="b0507" /gene_synonym="ECK0500; JW0495" /db_xref="EcoGene:EG11583" /db_xref="GeneID:945394" CDS 533916..535697 /gene="gcl" /locus_tag="b0507" /gene_synonym="ECK0500; JW0495" /EC_number="4.1.1.47" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_process="GO:0009442 - allantoin assimilation pathway; GO:0009441 - glycolate metabolic process" /codon_start=1 /transl_table=11 /product="glyoxylate carboligase" /protein_id="NP_415040.1" /db_xref="GI:16128491" /db_xref="ASAP:ABE-0001754" /db_xref="UniProtKB/Swiss-Prot:P0AEP7" /db_xref="EcoGene:EG11583" /db_xref="GeneID:945394" /translation="MAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIR HILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITG QAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLV DLPFDVQVAEIEFDPDMYEPLPVYKPAASRMQIEKAVEMLIQAERPVIVAGGGVINAD AAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFG IGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQ EMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTT IGLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQ FLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYG VDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVILERVTNISMGSE LDNVMEFEDIADNAADAPTETCFMHYE" gene 535710..536486 /gene="hyi" /locus_tag="b0508" /gene_synonym="ECK0501; gip; JW0496; ybbG" /db_xref="EcoGene:EG11584" /db_xref="GeneID:946186" CDS 535710..536486 /gene="hyi" /locus_tag="b0508" /gene_synonym="ECK0501; gip; JW0496; ybbG" /EC_number="5.3.1.22" /function="phenotype; Not classified" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="hydroxypyruvate isomerase" /protein_id="NP_415041.1" /db_xref="GI:16128492" /db_xref="ASAP:ABE-0001756" /db_xref="UniProtKB/Swiss-Prot:P30147" /db_xref="EcoGene:EG11584" /db_xref="GeneID:946186" /translation="MLRFSANLSMLFGEYDFLARFEKAAQCGFRGVEFMFPYDYDIEE LKHVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALGNKKI NCLVGKTPAGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGFHLTGTRQ ALKLIDDVGCCNLKIQYDIYHMQRMEGELTNTMTQWADKIGHLQIADNPHRGEPGTGE INYDYLFKVIENSDYNGWVGCEYKPQTTTEAGLRWMDPYR" gene 536586..537464 /gene="glxR" /locus_tag="b0509" /gene_synonym="ECK0502; glxB1; JW0497; ybbQ" /db_xref="EcoGene:EG13265" /db_xref="GeneID:945146" CDS 536586..537464 /gene="glxR" /locus_tag="b0509" /gene_synonym="ECK0502; glxB1; JW0497; ybbQ" /EC_number="1.1.1.60" /function="putative enzyme; Not classified" /GO_process="GO:0009442 - allantoin assimilation pathway; GO:0016052 - carbohydrate catabolic process; GO:0009441 - glycolate metabolic process" /codon_start=1 /transl_table=11 /product="tartronate semialdehyde reductase, NADH-dependent" /protein_id="NP_415042.1" /db_xref="GI:16128493" /db_xref="ASAP:ABE-0001759" /db_xref="UniProtKB/Swiss-Prot:P77161" /db_xref="EcoGene:EG13265" /db_xref="GeneID:945146" /translation="MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAV SVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKR FARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVG GNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHG ERMIKRTFNPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDH SALVQALELMANHKLA" gene 537633..539087 /gene="ybbW" /locus_tag="b0511" /gene_synonym="allP; ECK0504; glxB2; JW0499" /db_xref="EcoGene:EG13618" /db_xref="GeneID:945138" CDS 537633..539087 /gene="ybbW" /locus_tag="b0511" /gene_synonym="allP; ECK0504; glxB2; JW0499" /function="putative transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative allantoin transporter" /protein_id="NP_415044.4" /db_xref="GI:90111144" /db_xref="ASAP:ABE-0001764" /db_xref="UniProtKB/Swiss-Prot:P75712" /db_xref="EcoGene:EG13618" /db_xref="GeneID:945138" /translation="MEHQRKLFQQRGYSEDLLPKTQSQRTWKTFNYFTLWMGSVHNVP NYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVR GALFPGLLRGGIAAIMWFGLQCYAGSLACLILIGKIWPGFLTLGGDFTLLGLSLPGLI TFLIFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSG IQKAENGGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFREQALGQTLGLVVAYILFA VAGVCIIAGASIHYGADTWNVLDIVQRWDSLFASFFAVLVILMTTISTNATGNIIPAG YQIAAIAPTKLTYKNGVLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMM AHYFVVMRGQINLDELYTAPGDYKYYDNGFNLTAFSVTLVAVILSLGGKFIHFMEPLS RVSWFVGVIVAFAAYALLKKRTTAEKTGEQKTIG" gene 539147..540508 /gene="allB" /locus_tag="b0512" /gene_synonym="ECK0505; glxB3; JW0500; ybbX" /db_xref="EcoGene:EG13619" /db_xref="GeneID:945134" CDS 539147..540508 /gene="allB" /locus_tag="b0512" /gene_synonym="ECK0505; glxB3; JW0500; ybbX" /EC_number="3.5.2.5" /function="enzyme; Purine nitrogen catabolism" /GO_process="GO:0009442 - allantoin assimilation pathway; GO:0006807 - nitrogen compound metabolic process" /codon_start=1 /transl_table=11 /product="allantoinase" /protein_id="NP_415045.1" /db_xref="GI:16128496" /db_xref="ASAP:ABE-0001768" /db_xref="UniProtKB/Swiss-Prot:P77671" /db_xref="EcoGene:EG13619" /db_xref="GeneID:945134" /translation="MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVM DASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDR ASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDND FRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVF TEVEAIRRVLYLAKVAGCRLHVCHVSSPEGVEEVTRARQEGQDVTCESCPHYFVLDTD QFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMKAWGG IAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQ PNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILK HQQ" gene 540565..541866 /gene="ybbY" /locus_tag="b0513" /gene_synonym="ECK0506; glxB4; JW0501" /db_xref="EcoGene:EG13620" /db_xref="GeneID:945131" CDS 540565..541866 /gene="ybbY" /locus_tag="b0513" /gene_synonym="ECK0506; glxB4; JW0501" /function="putative transport; Not classified" /codon_start=1 /transl_table=11 /product="putative uracil/xanthine transporter" /protein_id="NP_415046.4" /db_xref="GI:90111145" /db_xref="ASAP:ABE-0001771" /db_xref="UniProtKB/Swiss-Prot:P77328" /db_xref="EcoGene:EG13620" /db_xref="GeneID:945131" /translation="MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLL TLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATS LAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFG IADPNFKIQLPPFALSVAVMCLVLAMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSH SLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTR YRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVP ALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMA LPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE" gene 541888..543033 /gene="glxK" /locus_tag="b0514" /gene_synonym="ECK0507; glxB5; JW0502; ybbZ" /db_xref="EcoGene:EG13621" /db_xref="GeneID:945129" CDS 541888..543033 /gene="glxK" /locus_tag="b0514" /gene_synonym="ECK0507; glxB5; JW0502; ybbZ" /EC_number="2.7.1.31" /GO_process="GO:0009442 - allantoin assimilation pathway; GO:0016052 - carbohydrate catabolic process; GO:0009441 - glycolate metabolic process" /codon_start=1 /transl_table=11 /product="glycerate kinase II" /protein_id="NP_415047.1" /db_xref="GI:16128498" /db_xref="ASAP:ABE-0001773" /db_xref="UniProtKB/Swiss-Prot:P77364" /db_xref="EcoGene:EG13621" /db_xref="GeneID:945129" /translation="MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADG GEGTVDAMVAATGGNIVTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPE KRNPLLASSFGTGELIRHALDNDIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQA LAANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEM VEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAV NLAQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVH QYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN" repeat_region 543087..543183 /note="RIP50 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(543261..544046) /gene="allE" /locus_tag="b0515" /gene_synonym="ECK0508; glxB6; JW0503; ughY; ylbA" /db_xref="EcoGene:EG13622" /db_xref="GeneID:945149" CDS complement(543261..544046) /gene="allE" /locus_tag="b0515" /gene_synonym="ECK0508; glxB6; JW0503; ughY; ylbA" /function="enzyme; Purine nitrogen catabolism" /codon_start=1 /transl_table=11 /product="S-ureidoglycine aminohydrolase" /protein_id="NP_415048.1" /db_xref="GI:16128499" /db_xref="ASAP:ABE-0001775" /db_xref="UniProtKB/Swiss-Prot:P75713" /db_xref="EcoGene:EG13622" /db_xref="GeneID:945149" /translation="MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFEN CDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFA LSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYE GMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNN WIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI" gene complement(544057..545292) /gene="allC" /locus_tag="b0516" /gene_synonym="ECK0509; glxB7; JW0504; ylbB" /db_xref="EcoGene:EG13623" /db_xref="GeneID:945150" CDS complement(544057..545292) /gene="allC" /locus_tag="b0516" /gene_synonym="ECK0509; glxB7; JW0504; ylbB" /EC_number="3.5.3.4" /function="enzyme; Purine nitrogen catabolism" /GO_process="GO:0009442 - allantoin assimilation pathway; GO:0006807 - nitrogen compound metabolic process" /codon_start=1 /transl_table=11 /product="allantoate amidohydrolase" /protein_id="NP_415049.1" /db_xref="GI:16128500" /db_xref="ASAP:ABE-0001777" /db_xref="UniProtKB/Swiss-Prot:P77425" /db_xref="EcoGene:EG13623" /db_xref="GeneID:945150" /translation="MITHFRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFK KRMAASGLETRFDEVGNLYGRLNGTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWL AIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNS FVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTV TLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPRPNTVNV VPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKEL VATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITD LAEGVKTLALMLYQLAWQK" gene complement(545314..546363) /gene="allD" /locus_tag="b0517" /gene_synonym="ECK0510; glxB8; JW0505; ylbC" /db_xref="EcoGene:EG13624" /db_xref="GeneID:948342" CDS complement(545314..546363) /gene="allD" /locus_tag="b0517" /gene_synonym="ECK0510; glxB8; JW0505; ylbC" /EC_number="1.1.1.154" /function="enzyme; Purine nitrogen catabolism" /GO_process="GO:0009442 - allantoin assimilation pathway; GO:0006807 - nitrogen compound metabolic process" /codon_start=1 /transl_table=11 /product="ureidoglycolate dehydrogenase" /protein_id="NP_415050.1" /db_xref="GI:16128501" /db_xref="ASAP:ABE-0001780" /db_xref="UniProtKB/Swiss-Prot:P77555" /db_xref="EcoGene:EG13624" /db_xref="GeneID:948342" /translation="MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSH GAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQ QNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLA FAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALL PAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSS ELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISD ALYNTSYETKNPFAQ" gene 546680..548347 /gene="fdrA" /locus_tag="b0518" /gene_synonym="ECK0511; JW0506; ylbD" /db_xref="EcoGene:EG13399" /db_xref="GeneID:946298" CDS 546680..548347 /gene="fdrA" /locus_tag="b0518" /gene_synonym="ECK0511; JW0506; ylbD" /function="transport; Protein, peptide secretion" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="involved in protein transport; multicopy suppressor of dominant negative ftsH mutants" /codon_start=1 /transl_table=11 /product="putative NAD(P)-binding acyl-CoA synthetase" /protein_id="NP_415051.1" /db_xref="GI:16128502" /db_xref="ASAP:ABE-0001784" /db_xref="UniProtKB/Swiss-Prot:Q47208" /db_xref="EcoGene:EG13399" /db_xref="GeneID:946298" /translation="MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKA LLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQAL TQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLK TRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGE GITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMK ATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFIC GLYTGGTLAAEAAGLLAGHLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMI DPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARLDNQPLYA IATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIHPLSPAAQQHTPSLL ENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ" gene 548357..549616 /gene="ylbE" /locus_tag="b4572" /gene_synonym="ECK0512; JW0507; JW0508" /db_xref="EcoGene:EG13398" /db_xref="GeneID:4056025" CDS 548357..549616 /gene="ylbE" /locus_tag="b4572" /gene_synonym="ECK0512; JW0507; JW0508" /codon_start=1 /transl_table=11 /product="NO-induced DUF1116 protein" /protein_id="YP_009029994.1" /db_xref="GI:635341461" /db_xref="ASAP:ABE-0001787" /db_xref="ASAP:ABE-0285028" /db_xref="ASAP:ABE-0285105" /db_xref="UniProtKB/Swiss-Prot:P77129" /db_xref="EcoGene:EG13398" /db_xref="GeneID:4056025" /translation="MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNEGKTLLH AGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMG GITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLS AALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEV MDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFT APVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAAR AVSEEMAEIYLERNMQLQIPSWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQ IGAGTVRAPLACFEQALEALAESMGIG" gene 549627..550442 /gene="ylbF" /locus_tag="b0520" /gene_synonym="ECK0513; JW0509" /db_xref="EcoGene:EG13626" /db_xref="GeneID:945195" CDS 549627..550442 /gene="ylbF" /locus_tag="b0520" /gene_synonym="ECK0513; JW0509" /function="putative enzyme; Purine nitrogen catabolism" /note="putative carboxylase" /codon_start=1 /transl_table=11 /product="putative anaerobic allantoin catabolic oxamate carbamoyltransferase; DUF2877 family protein" /protein_id="NP_415053.1" /db_xref="GI:16128504" /db_xref="ASAP:ABE-0001789" /db_xref="UniProtKB/Swiss-Prot:P0AAS5" /db_xref="EcoGene:EG13626" /db_xref="GeneID:945195" /translation="MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHR QGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPP AHPQPLAAAWMQRAEETGLFGPLALAASDPLPAELRQFRHCFQAALNGVKTDWRHWLG KGPGLTPSHDDTLSGMLLAAWYYGALDARSGRPFFACSDNLQLVTTAVSVSYLRYAAQ GYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP" gene 550439..551332 /gene="ybcF" /locus_tag="b0521" /gene_synonym="arcC; ECK0514; JW0510" /db_xref="EcoGene:EG12384" /db_xref="GeneID:944972" CDS 550439..551332 /gene="ybcF" /locus_tag="b0521" /gene_synonym="arcC; ECK0514; JW0510" /function="putative enzyme; Purine nitrogen catabolism" /GO_process="GO:0006526 - arginine biosynthetic process; GO:0006221 - pyrimidine nucleotide biosynthetic process" /note="putative carbamate kinase" /codon_start=1 /transl_table=11 /product="putative carbonate kinase" /protein_id="NP_415054.1" /db_xref="GI:16128505" /db_xref="ASAP:ABE-0001791" /db_xref="UniProtKB/Swiss-Prot:P37306" /db_xref="EcoGene:EG12384" /db_xref="GeneID:944972" /translation="MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYR LAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVT TVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQP RKILDSEAIELLLKEGHVVICSGGGGVPVTDDGAGSEAVIDKDLAAALLAEQINADGL VILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPNVTAVSGYVRSRGKPAW IGALSRIEETLAGEAGTCISL" repeat_region 551354..551510 /note="REP52 (repetitive extragenic palindromic) element; contains 4 REP sequences" gene complement(551527..552594) /gene="purK" /locus_tag="b0522" /gene_synonym="ECK0515; JW0511; purE2" /db_xref="EcoGene:EG10796" /db_xref="GeneID:945153" CDS complement(551527..552594) /gene="purK" /locus_tag="b0522" /gene_synonym="ECK0515; JW0511; purE2" /EC_number="4.1.1.21" /function="enzyme; Purine ribonucleotide biosynthesis" /experiment="N-terminus verified by Edman degradation: PMID 1534690" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006164 - purine nucleotide biosynthetic process" /note="phosphoribosylaminoimidazole carboxylase = AIR carboxylase, CO(2)-fixing subunit" /codon_start=1 /transl_table=11 /product="N5-carboxyaminoimidazole ribonucleotide synthase" /protein_id="NP_415055.1" /db_xref="GI:16128506" /db_xref="ASAP:ABE-0001794" /db_xref="UniProtKB/Swiss-Prot:P09029" /db_xref="EcoGene:EG10796" /db_xref="GeneID:945153" /translation="MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQS VITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAE RSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINFSG EVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELG YVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVV NNPSVMINLIGSDVNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEA LIPLLPPEYASGVIWAQSKFG" gene complement(552591..553100) /gene="purE" /locus_tag="b0523" /gene_synonym="ade; ade3; ECK0516; JW0512; Pur2" /db_xref="EcoGene:EG10793" /db_xref="GeneID:949031" CDS complement(552591..553100) /gene="purE" /locus_tag="b0523" /gene_synonym="ade; ade3; ECK0516; JW0512; Pur2" /EC_number="4.1.1.21" /function="enzyme; Purine ribonucleotide biosynthesis" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006164 - purine nucleotide biosynthetic process" /note="phosphoribosylaminoimidazole carboxylase = AIR carboxylase, catalytic subunit" /codon_start=1 /transl_table=11 /product="N5-carboxyaminoimidazole ribonucleotide mutase" /protein_id="NP_415056.1" /db_xref="GI:16128507" /db_xref="ASAP:ABE-0001796" /db_xref="UniProtKB/Swiss-Prot:P0AG18" /db_xref="EcoGene:EG10793" /db_xref="GeneID:949031" /translation="MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSA HRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVD SLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVL ENPDPRGAA" gene complement(553218..553940) /gene="lpxH" /locus_tag="b0524" /gene_synonym="ECK0517; JW0513; ybbF" /db_xref="EcoGene:EG12666" /db_xref="GeneID:949053" CDS complement(553218..553940) /gene="lpxH" /locus_tag="b0524" /gene_synonym="ECK0517; JW0513; ybbF" /EC_number="3.6.1.-" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009245 - lipid A biosynthetic process" /codon_start=1 /transl_table=11 /product="UDP-2,3-diacylglucosamine pyrophosphohydrolase" /protein_id="NP_415057.1" /db_xref="GI:16128508" /db_xref="ASAP:ABE-0001804" /db_xref="UniProtKB/Swiss-Prot:P43341" /db_xref="EcoGene:EG12666" /db_xref="GeneID:949053" /translation="MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFE AWIGDDDPNPLHRKMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKV LELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQTLFLALPLFVRKRIAARMRANS KEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGA WHTEGSMVKVTADDVELIHFPF" gene complement(553943..554437) /gene="ppiB" /locus_tag="b0525" /gene_synonym="ECK0518; JW0514" /db_xref="EcoGene:EG10758" /db_xref="GeneID:949038" CDS complement(553943..554437) /gene="ppiB" /locus_tag="b0525" /gene_synonym="ECK0518; JW0514" /EC_number="5.2.1.8" /function="enzyme; Proteins - translation and modification" /experiment="N-terminus verified by Edman degradation: PMID 9298646,9600841,9740056" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006457 - protein folding" /codon_start=1 /transl_table=11 /product="peptidyl-prolyl cis-trans isomerase B (rotamase B)" /protein_id="NP_415058.1" /db_xref="GI:16128509" /db_xref="ASAP:ABE-0001806" /db_xref="UniProtKB/Swiss-Prot:P23869" /db_xref="EcoGene:EG10758" /db_xref="GeneID:949038" /translation="MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRV INGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINV VDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESV TVSE" gene 554611..555996 /gene="cysS" /locus_tag="b0526" /gene_synonym="ECK0519; JW0515" /db_xref="EcoGene:EG10196" /db_xref="GeneID:946969" CDS 554611..555996 /gene="cysS" /locus_tag="b0526" /gene_synonym="ECK0519; JW0515" /EC_number="6.1.1.16" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /experiment="N-terminus verified by Edman degradation: PMID 2014166" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="cysteine tRNA synthetase" /codon_start=1 /transl_table=11 /product="cysteinyl-tRNA synthetase" /protein_id="NP_415059.1" /db_xref="GI:16128510" /db_xref="ASAP:ABE-0001810" /db_xref="UniProtKB/Swiss-Prot:P21888" /db_xref="EcoGene:EG10196" /db_xref="GeneID:946969" /translation="MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTF VAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDA LNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDL DQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLG NHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFT VRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAG GEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLG LLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLE DGPQGTTWRRK" repeat_region 556007..556032 /note="REP53 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(556032..556553) /gene="ybcI" /locus_tag="b0527" /gene_synonym="ECK0520; JW0516" /db_xref="EcoGene:EG12708" /db_xref="GeneID:945155" CDS complement(556032..556553) /gene="ybcI" /locus_tag="b0527" /gene_synonym="ECK0520; JW0516" /codon_start=1 /transl_table=11 /product="DUF457 family inner membrane protein" /protein_id="NP_415060.1" /db_xref="GI:16128511" /db_xref="ASAP:ABE-0001812" /db_xref="UniProtKB/Swiss-Prot:P45570" /db_xref="EcoGene:EG12708" /db_xref="GeneID:945155" /translation="MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLS FKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVFIGRRWFRAGLIRCWLFLTVSLLSHSL LDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLP GMLLMGMLWWRRR" gene complement(556661..556873) /gene="ybcJ" /locus_tag="b0528" /gene_synonym="ECK0521; JW5070" /db_xref="EcoGene:EG12879" /db_xref="GeneID:945158" CDS complement(556661..556873) /gene="ybcJ" /locus_tag="b0528" /gene_synonym="ECK0521; JW5070" /codon_start=1 /transl_table=11 /product="ribosome-associated protein; putative RNA-binding protein" /protein_id="NP_415061.2" /db_xref="GI:90111146" /db_xref="ASAP:ABE-0001816" /db_xref="UniProtKB/Swiss-Prot:P0AAS7" /db_xref="EcoGene:EG12879" /db_xref="GeneID:945158" /translation="MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGA VETRKRCKIVAGQTVSFAGHSVQVVA" gene complement(556875..557741) /gene="folD" /locus_tag="b0529" /gene_synonym="ads; ECK0522; JW0518" /db_xref="EcoGene:EG10328" /db_xref="GeneID:945221" CDS complement(556875..557741) /gene="folD" /locus_tag="b0529" /gene_synonym="ads; ECK0522; JW0518" /EC_number="1.5.1.5" /EC_number="3.5.4.9" /function="enzyme; Biosynthesis of cofactors, carriers: Folic acid" /GO_process="GO:0046656 - folic acid biosynthetic process" /note="5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase" /codon_start=1 /transl_table=11 /product="bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase" /protein_id="NP_415062.1" /db_xref="GI:16128513" /db_xref="ASAP:ABE-0001818" /db_xref="UniProtKB/Swiss-Prot:P24186" /db_xref="EcoGene:EG10328" /db_xref="GeneID:945221" /translation="MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSN PASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLP AGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGL NAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPG DWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTL QACVEYHDPQDE" gene 558212..558754 /gene="sfmA" /locus_tag="b0530" /gene_synonym="ECK0523; fimA; JW0519" /db_xref="EcoGene:EG13881" /db_xref="GeneID:945522" CDS 558212..558754 /gene="sfmA" /locus_tag="b0530" /gene_synonym="ECK0523; fimA; JW0519" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="putative fimbrial-like protein" /codon_start=1 /transl_table=11 /product="FimA homolog, function unknown" /protein_id="NP_415063.4" /db_xref="GI:90111147" /db_xref="ASAP:ABE-0001825" /db_xref="UniProtKB/Swiss-Prot:P0ABW5" /db_xref="EcoGene:EG13881" /db_xref="GeneID:945522" /translation="MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVN TDSADQVVTLGQYRTDIFNAVGNTSALIPFTIQLNDCDPVVAANAAVAFSGQADAIND NLLAIASSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGT GTSASAGQANADATFIMRYE" gene 558974..559666 /gene="sfmC" /locus_tag="b0531" /gene_synonym="ECK0524; fimC; JW0520" /db_xref="EcoGene:EG13882" /db_xref="GeneID:945367" CDS 558974..559666 /gene="sfmC" /locus_tag="b0531" /gene_synonym="ECK0524; fimC; JW0520" /function="putative factor; Surface structures" /GO_process="GO:0006457 - protein folding" /note="putative chaperone" /codon_start=1 /transl_table=11 /product="putative periplasmic pilus chaperone" /protein_id="NP_415064.1" /db_xref="GI:16128515" /db_xref="ASAP:ABE-0001828" /db_xref="UniProtKB/Swiss-Prot:P77249" /db_xref="EcoGene:EG13882" /db_xref="GeneID:945367" /translation="MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTA VWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAAD RESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSR SGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVNSQIPLPSGVQGKLKFQTVNDY GSVTPVREVNLN" gene 559697..562300 /gene="sfmD" /locus_tag="b0532" /gene_synonym="ECK0525; fimD; JW0521" /db_xref="EcoGene:EG13883" /db_xref="GeneID:945160" CDS 559697..562300 /gene="sfmD" /locus_tag="b0532" /gene_synonym="ECK0525; fimD; JW0521" /function="membrane; Outer membrane constituents" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative outer membrane protein, export function" /codon_start=1 /transl_table=11 /product="putative outer membrane export usher protein" /protein_id="NP_415065.1" /db_xref="GI:16128516" /db_xref="ASAP:ABE-0001830" /db_xref="UniProtKB/Swiss-Prot:P77468" /db_xref="EcoGene:EG13883" /db_xref="GeneID:945160" /translation="MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFL LENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMP CFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIAL LSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSW NYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDN MYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDV TIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTALGGL PQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGDSIRFL YAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEPIIVNYHNL RFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSF SWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLA GVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDVNWQL SGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRY NRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGS LVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVT VISAVCTHPGS" gene 562336..563319 /gene="sfmH" /locus_tag="b0533" /gene_synonym="ECK0526; fimH; JW5071" /db_xref="EcoGene:EG13884" /db_xref="GeneID:945407" CDS 562336..563319 /gene="sfmH" /locus_tag="b0533" /gene_synonym="ECK0526; fimH; JW5071" /function="putative structural component; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="involved in fimbrial asembly" /codon_start=1 /transl_table=11 /product="FimA homolog, function unknown" /protein_id="NP_415066.2" /db_xref="GI:145698227" /db_xref="ASAP:ABE-0001832" /db_xref="UniProtKB/Swiss-Prot:P75715" /db_xref="EcoGene:EG13884" /db_xref="GeneID:945407" /translation="MAMACLCLANISWATVCANSTGVAEDEHYDLSNIFNSTNNQPGQ IVVLPEKSGWVGVSAICPPGTLVNYTYRSYVTNFIVQETIDNYKYMQLHDYLLGAMSL VDSVMDIQFPPQNYIRMGTDPNVSQNLPFGVMDSRLIFRLKVIRPFINMVEIPRQVMF TVYVTSTPYDPLVTPVYTISFGGRVEVPQNCELNAGQIVEFDFGDIGASLFSAAGPGN RPAGVMPQTKSIAVKCTNVAAQAYLTMRLEASAVSGQAMVSDNQDLGFIVADQNDTPI TPNDLNSVIPFRLDAAAAANVTLRAWPISITGQKPTEGPFSALGYLRVDYQ" gene 563330..563845 /gene="sfmF" /locus_tag="b0534" /gene_synonym="ECK0527; fimF; JW5072; ybcG" /db_xref="EcoGene:EG12388" /db_xref="GeneID:944977" CDS 563330..563845 /gene="sfmF" /locus_tag="b0534" /gene_synonym="ECK0527; fimF; JW5072; ybcG" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="putative fimbrial-like protein" /codon_start=1 /transl_table=11 /product="FimA homolog, function unknown" /protein_id="NP_415067.1" /db_xref="GI:16128518" /db_xref="ASAP:ABE-0001834" /db_xref="UniProtKB/Swiss-Prot:P38052" /db_xref="EcoGene:EG12388" /db_xref="GeneID:944977" /translation="MRRVLFSCFCGLLWSSSGWAVDPLGTININLHGNVVDFSCTVNT ADIDKTVDLGRWPTTQLLNAGDTTALVPFSLRLEGCPPGSVAILFTGTPASDTNLLAL DDPAMAQTVAIELRNSDRSRLALGEASPTEEVDANGNVTLNFFANYRALASGVRPGVA KADAIFMINYN" gene complement(563848..564480) /gene="sfmZ" /locus_tag="b0535" /gene_synonym="ECK0528; fimZ; JW5073; ybcA" /db_xref="EcoGene:EG11103" /db_xref="GeneID:947079" CDS complement(563848..564480) /gene="sfmZ" /locus_tag="b0535" /gene_synonym="ECK0528; fimZ; JW5073; ybcA" /function="putative regulator; Surface structures" /GO_component="GO:0009289 - pilus" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="fimbrial Z protein; probable signal transducer" /codon_start=1 /transl_table=11 /product="response regulator family protein" /protein_id="NP_415068.1" /db_xref="GI:16128519" /db_xref="ASAP:ABE-0001836" /db_xref="UniProtKB/Swiss-Prot:P0AEL8" /db_xref="EcoGene:EG11103" /db_xref="GeneID:947079" /translation="MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDY LRTRPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANG FVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTVTVLSNREVTILRY LVSGLSNKEIADKLLLSNKTVSAHKSNIYGKLGLHSIVELIDYAKLYELI" gene 564723..564799 /gene="argU" /locus_tag="b0536" /gene_synonym="dnaY; ECK0529; fimU; JWR0010; pin" /db_xref="EcoGene:EG30014" /db_xref="GeneID:945161" tRNA 564723..564799 /gene="argU" /locus_tag="b0536" /gene_synonym="dnaY; ECK0529; fimU; JWR0010; pin" /product="tRNA-Arg" /note="anticodon: UCU" /db_xref="ASAP:ABE-0001840" /db_xref="EcoGene:EG30014" /db_xref="GeneID:945161" misc_feature 564802..586103 /note="cryptic prophage DLP12" gene complement(564815..565978) /gene="intD" /locus_tag="b0537" /gene_synonym="ECK0530; int; JW0525" /db_xref="EcoGene:EG10507" /db_xref="GeneID:947162" CDS complement(564815..565978) /gene="intD" /locus_tag="b0537" /gene_synonym="ECK0530; int; JW0525" /function="IS, phage, Tn; Phage or Prophage Related" /note="prophage DLP12 integrase" /codon_start=1 /transl_table=11 /product="DLP12 prophage; putative phage integrase" /protein_id="NP_415069.1" /db_xref="GI:16128520" /db_xref="ASAP:ABE-0001842" /db_xref="UniProtKB/Swiss-Prot:P24218" /db_xref="EcoGene:EG10507" /db_xref="GeneID:947162" /translation="MSLFRRNEIWYASYSLPGGKRIKESLGTKDKRQAQELHDKRKAE LWRVEKLGDLPDVTFEEACLRWLEEKADKKSLDSDKSRIEFWLEHFEGIRLKDISEAK IYSAVSRMHNRKTKEIWKQKVQAAIRKGKELPVYEPKPVSTQTKAKHLAMIKAILRAA ERDWKWLEKAPVIKIPAVRNKRVRWLEKEEAKRLIDECPEPLKSVVKFALATGLRKSN IINLEWQQIDMQRRVAWVNPEESKSNRAIGVALNDTACKVLRDQIGKHHKWVFVHTKA AKRADGTSTPAVRKMRIDSKTSWLSACRRAGIEDFRFHDLRHTWASWLIQSGVPLSVL QEMGGWESIEMVRRYAHLAPNHLTEHARKIDDIFGDNVPNMSHSEIMEDIKKA" gene complement(565858..566079) /gene="xisD" /locus_tag="b4633" /gene_synonym="ECK4435; ybcB" /pseudo /db_xref="EcoGene:EG12348" /db_xref="GeneID:5625559" CDS complement(565858..566079) /gene="xisD" /locus_tag="b4633" /gene_synonym="ECK4435; ybcB" /note="pseudogene, exisionase in defective prophage DLP12;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="EcoGene:EG12348" /db_xref="GeneID:5625559" gene complement(566098..566376) /gene="exoD" /locus_tag="b0539" /gene_synonym="ECK0531; JW0526; ybcC" /pseudo /db_xref="EcoGene:EG12349" /db_xref="GeneID:947902" CDS complement(566098..566376) /gene="exoD" /locus_tag="b0539" /gene_synonym="ECK0531; JW0526; ybcC" /note="pseudogene, DLP12 prophage; phage-type exonuclease family;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0001850" /db_xref="UniProtKB/Swiss-Prot:P75717" /db_xref="EcoGene:EG12349" /db_xref="GeneID:947902" gene 566376..566687 /gene="peaD" /locus_tag="b4508" /gene_synonym="ECK0532; JW0527; ybcD" /pseudo /db_xref="EcoGene:EG12350" /db_xref="GeneID:945299" CDS 566376..566687 /gene="peaD" /locus_tag="b4508" /gene_synonym="ECK0532; JW0527; ybcD" /GO_component="GO:0005737 - cytoplasm" /note="pseudogene; DLP12 prophage; replication protein family;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0285029" /db_xref="UniProtKB/Swiss-Prot:P77528" /db_xref="EcoGene:EG12350" /db_xref="GeneID:945299" gene join(566684..566776,568035..568247) /gene="renD" /locus_tag="b0542" /gene_synonym="ECK0533; JW0530; ybcE" /pseudo /db_xref="EcoGene:EG12351" /db_xref="GeneID:945024" CDS join(566684..566776,568035..568247) /gene="renD" /locus_tag="b0542" /gene_synonym="ECK0533; JW0530; ybcE" /note="pseudogene, DLP12 prophage;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0001860" /db_xref="UniProtKB/Swiss-Prot:P75718" /db_xref="EcoGene:EG12351" /db_xref="GeneID:945024" mobile_element 566777..568034 /mobile_element_type="insertion sequence:IS3C" gene 566842..567141 /gene="insE1" /locus_tag="b0540" /gene_synonym="ECK0298" /db_xref="EcoGene:EG40005" /db_xref="GeneID:945759" CDS 566842..567141 /gene="insE1" /locus_tag="b0540" /gene_synonym="ECK0298" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS3 transposase A" /protein_id="NP_415072.2" /db_xref="GI:226524703" /db_xref="ASAP:ABE-0001855" /db_xref="UniProtKB/Swiss-Prot:P0CF68" /db_xref="EcoGene:EG40005" /db_xref="GeneID:945759" /translation="MTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYES QLYNWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATYFAKRLK" gene 567138..568004 /gene="insF1" /locus_tag="b0541" /gene_synonym="ECK0299" /db_xref="EcoGene:EG40006" /db_xref="GeneID:947988" CDS 567138..568004 /gene="insF1" /locus_tag="b0541" /gene_synonym="ECK0299" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS3 transposase B" /protein_id="NP_415073.1" /db_xref="GI:16128524" /db_xref="ASAP:ABE-0001857" /db_xref="UniProtKB/Swiss-Prot:P0CF81" /db_xref="EcoGene:EG40006" /db_xref="GeneID:947988" /translation="MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQ FRQHCDSVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKF SPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVI GWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSM SAKGCCYDNACVESFFHSLKVECIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGG LSPEQFENKNLA" gene 568315..568647 /gene="emrE" /locus_tag="b0543" /gene_synonym="eb; ECK0534; JW0531; mvrC" /db_xref="EcoGene:EG10629" /db_xref="GeneID:948442" CDS 568315..568647 /gene="emrE" /locus_tag="b0543" /gene_synonym="eb; ECK0534; JW0531; mvrC" /function="transport; Drug/analog sensitivity; Phage or Prophage Related" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042493 - response to drug" /note="methylviologen resistance" /codon_start=1 /transl_table=11 /product="DLP12 prophage; multidrug resistance protein" /protein_id="NP_415075.1" /db_xref="GI:16128526" /db_xref="ASAP:ABE-0001863" /db_xref="UniProtKB/Swiss-Prot:P23895" /db_xref="EcoGene:EG10629" /db_xref="GeneID:948442" /translation="MNPYIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASF WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN LLSRSTPH" gene 568902..570428 /gene="ybcK" /locus_tag="b0544" /gene_synonym="ECK0535; JW0532" /db_xref="EcoGene:EG13627" /db_xref="GeneID:945166" CDS 568902..570428 /gene="ybcK" /locus_tag="b0544" /gene_synonym="ECK0535; JW0532" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="DLP12 prophage; putative recombinase" /protein_id="NP_415076.1" /db_xref="GI:16128527" /db_xref="ASAP:ABE-0001866" /db_xref="UniProtKB/Swiss-Prot:P77698" /db_xref="EcoGene:EG13627" /db_xref="GeneID:945166" /translation="MKKAIAYMRFSSPGQMSGDSLNRQRRLIAEWLKVNSDYYLDTIT YEDLGLSAFKGKHAQSGAFSEFLDAIEHGYILPGTTLLVESLDRLSREKVGEAIERLK LILNHGIDVITLCDNTVYNIDSLNEPYSLIKAILIAQRANEESEIKSSRVKLSWKKKR QDALESGTIMTASCPRWLSLDDKRTAFVPDPDRVKTIELIFKLRMERRSLNAIAKYLN DHAVKNFSGKESAWGPSVIEKLLANKALIGICVPSYRARGKGISEIAGYYPRVISDDL FYAVQEIRLAPFGISNSSKNPMLINLLRTVMKCEACGNTMIVHAVSGSLHGYYVCPMR RLHRCDRPSIKRDLVDYNIINELLFNCSKIQPVENKKDANETLELKIIELQMKINNLI VALSVAPEVTAIAEKIRLLDKELRRASVSLKTLKSKGVNSFSDFYAIDLTSKNGRELC RTLAYKTFEKIIINTDNKTCDIYFMNGIVFKHYPLMKVISAQQAISALKYMVDGEIYF " gene 570893..571444 /gene="ybcL" /locus_tag="b0545" /gene_synonym="ECK0536; JW0533" /db_xref="EcoGene:EG13628" /db_xref="GeneID:945165" CDS 570893..571444 /gene="ybcL" /locus_tag="b0545" /gene_synonym="ECK0536; JW0533" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; UPF0098 family secreted protein" /protein_id="NP_415077.1" /db_xref="GI:16128528" /db_xref="ASAP:ABE-0001869" /db_xref="UniProtKB/Swiss-Prot:P77368" /db_xref="EcoGene:EG13628" /db_xref="GeneID:945165" /translation="MKTLIVSTVLAFITFSAQAAAFQVTSNEIKTGEQLTTSHVFSGF GCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSGWWHWTVVNIPATVTYLPVDAG RRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVDSNSSGA LVGYMLNANKIATAEITPVYEIK" gene 571454..572251 /gene="ybcM" /locus_tag="b0546" /gene_synonym="ECK0537; JW0534" /db_xref="EcoGene:EG13629" /db_xref="GeneID:945163" CDS 571454..572251 /gene="ybcM" /locus_tag="b0546" /gene_synonym="ECK0537; JW0534" /function="Phage or Prophage Related" /note="putative ARAC-type regulatory protein" /codon_start=1 /transl_table=11 /product="DLP12 prophage; putative DNA-binding transcriptional regulator" /protein_id="NP_415078.1" /db_xref="GI:16128529" /db_xref="ASAP:ABE-0001871" /db_xref="UniProtKB/Swiss-Prot:P77634" /db_xref="EcoGene:EG13629" /db_xref="GeneID:945163" /translation="MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINW ETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIR NKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSK QSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNA LSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE" gene 572368..572469 /gene="ylcH" /locus_tag="b4588" /gene_synonym="ECK4398" /db_xref="EcoGene:EG14355" /db_xref="GeneID:5061504" CDS 572368..572469 /gene="ylcH" /locus_tag="b4588" /gene_synonym="ECK4398" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="uncharacterized protein, DLP12 prophage" /protein_id="YP_001165308.1" /db_xref="GI:145698228" /db_xref="UniProtKB/Swiss-Prot:Q47268" /db_xref="EcoGene:EG14355" /db_xref="GeneID:5061504" /translation="MRTYNPNSLLPSQMQKCTCNSLHLAFDLCGGEA" gene 572466..572921 /gene="ybcN" /locus_tag="b0547" /gene_synonym="ECK0538; JW0535" /db_xref="EcoGene:EG13630" /db_xref="GeneID:945162" CDS 572466..572921 /gene="ybcN" /locus_tag="b0547" /gene_synonym="ECK0538; JW0535" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="DLP12 prophage; uncharacterized protein" /protein_id="NP_415079.1" /db_xref="GI:16128530" /db_xref="ASAP:ABE-0001874" /db_xref="UniProtKB/Swiss-Prot:Q47269" /db_xref="EcoGene:EG13630" /db_xref="GeneID:945162" /translation="MNLSQDGIKLHRGNFTAIGRQIQPYLEEGKCFRMVLKPWREKRS LSQNALSHMWYSEISEYLISRGKTFATPAWVKDALKHTYLGYETKDLVDVVTGDITTI QSLRHTSDLDTGEMYVFLCKVEAWAMNIGCHLTIPQSCEFQLLRDKQEA" gene 572921..573091 /gene="ninE" /locus_tag="b0548" /gene_synonym="ECK0539; JW0536" /db_xref="EcoGene:EG14286" /db_xref="GeneID:945151" CDS 572921..573091 /gene="ninE" /locus_tag="b0548" /gene_synonym="ECK0539; JW0536" /function="Phage or Prophage Related" /note="similar to phage 82 and lambda proteins" /codon_start=1 /transl_table=11 /product="DLP12 prophage; conserved protein" /protein_id="NP_415080.1" /db_xref="GI:16128531" /db_xref="ASAP:ABE-0001876" /db_xref="UniProtKB/Swiss-Prot:Q47270" /db_xref="EcoGene:EG14286" /db_xref="GeneID:945151" /translation="MATPLIRVMNGHIYRVPNRRKRKPELKPSEIPTLLGYTASLVDK KWLRLAARRSHG" gene 573084..573374 /gene="ybcO" /locus_tag="b0549" /gene_synonym="ECK0540; JW0537" /db_xref="EcoGene:EG13631" /db_xref="GeneID:945147" CDS 573084..573374 /gene="ybcO" /locus_tag="b0549" /gene_synonym="ECK0540; JW0537" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="DLP12 prophage; uncharacterized protein" /protein_id="NP_415081.1" /db_xref="GI:16128532" /db_xref="ASAP:ABE-0001878" /db_xref="UniProtKB/Swiss-Prot:P68661" /db_xref="EcoGene:EG13631" /db_xref="GeneID:945147" /translation="MADLRKAARGRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTK PPDLIATIACSACHDEIDRRTHFVDAGYAKECALEGMARTQVIWLKEGVIKA" gene 573371..573733 /gene="rusA" /locus_tag="b0550" /gene_synonym="ECK0541; JW0538; rus; ybcP" /db_xref="EcoGene:EG20283" /db_xref="GeneID:945174" CDS 573371..573733 /gene="rusA" /locus_tag="b0550" /gene_synonym="ECK0541; JW0538; rus; ybcP" /EC_number="3.1.22.-" /function="enzyme; Degradation of DNA; Phage or Prophage Related" /experiment="N-terminus verified by Edman degradation: PMID 7813450" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006308 - DNA catabolic process; GO:0006281 - DNA repair" /note="endodeoxyribonuclease RUS (Holliday junction resolvase)" /codon_start=1 /transl_table=11 /product="DLP12 prophage; endonuclease RUS" /protein_id="NP_415082.1" /db_xref="GI:16128533" /db_xref="ASAP:ABE-0001880" /db_xref="UniProtKB/Swiss-Prot:P0AG74" /db_xref="EcoGene:EG20283" /db_xref="GeneID:945174" /translation="MNTYSITLPWPPSNNRYYRHNRGRTHVSAEGQAYRDNVARIIKN AMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKM PVTKGGRLELTITEMGNE" gene 573730..573870 /gene="ylcG" /locus_tag="b4509" /gene_synonym="ECK0542; JW5076" /db_xref="EcoGene:EG14354" /db_xref="GeneID:1450240" CDS 573730..573870 /gene="ylcG" /locus_tag="b4509" /gene_synonym="ECK0542; JW5076" /function="Phage or Prophage Related" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="uncharacterized protein, DLP12 prophage" /protein_id="YP_588439.1" /db_xref="GI:94541097" /db_xref="ASAP:ABE-0285030" /db_xref="UniProtKB/Swiss-Prot:Q47272" /db_xref="EcoGene:EG14354" /db_xref="GeneID:1450240" /translation="MMFEFNMAELLRHRWGRLRLYRFPGSVLTDYRILKNYAKTLTGA GV" gene 573956..574339 /gene="quuD" /locus_tag="b0551" /gene_synonym="ECK0543; JW0539; ybcQ" /db_xref="EcoGene:EG13633" /db_xref="GeneID:945177" CDS 573956..574339 /gene="quuD" /locus_tag="b0551" /gene_synonym="ECK0543; JW0539; ybcQ" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="DLP12 prophage; putative antitermination protein" /protein_id="NP_415083.1" /db_xref="GI:16128534" /db_xref="ASAP:ABE-0001883" /db_xref="UniProtKB/Swiss-Prot:Q47274" /db_xref="EcoGene:EG13633" /db_xref="GeneID:945177" /translation="MRDIQMVLERWGAWAANNHEDVTWSSIAAGFKGLITSKVKSRPQ CCDDDAMIICGCMARLKKNNSDLHDLLVDYYVVGMTFMSLAGKHCCSDGYIGKRLQKA EGIIEGMLMALDIRLEMDIVVNNSN" gene complement(join(574529..574586,575786..576825)) /gene="nmpC" /locus_tag="b0553" /gene_synonym="ECK0544; JW5078; phmA" /pseudo /db_xref="EcoGene:EG10659" /db_xref="GeneID:946786" CDS complement(join(574529..574586,575786..576825)) /gene="nmpC" /locus_tag="b0553" /gene_synonym="ECK0544; JW5078; phmA" /note="DLP12 prophage; truncated outer membrane porin (pseudogene);IS, phage, Tn; Phage or Prophage Related; outer membrane porin protein; locus of qsr prophage" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0001888" /db_xref="UniProtKB/Swiss-Prot:P21420" /db_xref="EcoGene:EG10659" /db_xref="GeneID:946786" mobile_element complement(574591..575785) /mobile_element_type="insertion sequence:IS5B" gene complement(574737..575753) /gene="insH1" /locus_tag="b0552" /gene_synonym="ECK0261" /db_xref="EcoGene:EG40008" /db_xref="GeneID:946163" CDS complement(574737..575753) /gene="insH1" /locus_tag="b0552" /gene_synonym="ECK0261" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS5 transposase and trans-activator" /protein_id="NP_415084.1" /db_xref="GI:16128535" /db_xref="ASAP:ABE-0001886" /db_xref="UniProtKB/Swiss-Prot:P0CE50" /db_xref="EcoGene:EG40008" /db_xref="GeneID:946163" /translation="MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQIL PWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLF ARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIE APSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQL GNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINI EYMKASIRARVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRADQMIRQW ERSH" gene 577398..577613 /gene="essD" /locus_tag="b0554" /gene_synonym="ECK0545; JW0543; ybcR" /db_xref="EcoGene:EG13634" /db_xref="GeneID:947545" CDS 577398..577613 /gene="essD" /locus_tag="b0554" /gene_synonym="ECK0545; JW0543; ybcR" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="DLP12 prophage; putative phage lysis protein" /protein_id="NP_415086.1" /db_xref="GI:16128537" /db_xref="ASAP:ABE-0001895" /db_xref="UniProtKB/Swiss-Prot:P0A9R2" /db_xref="EcoGene:EG13634" /db_xref="GeneID:947545" /translation="MKSMDKLTTGVAYGTSAGSAGYWFLQLLDKVTPSQWAAIGVLGS LVFGLLTYLTNLYFKIKEDKRKAARGE" gene 577613..578110 /gene="rrrD" /locus_tag="b0555" /gene_synonym="arrD; ECK0546; JW0544; ybcS" /db_xref="EcoGene:EG13635" /db_xref="GeneID:947539" CDS 577613..578110 /gene="rrrD" /locus_tag="b0555" /gene_synonym="arrD; ECK0546; JW0544; ybcS" /function="Phage or Prophage Related" /note="bacteriophage lambda lysozyme homolog" /codon_start=1 /transl_table=11 /product="DLP12 prophage; putative lysozyme" /protein_id="NP_415087.1" /db_xref="GI:16128538" /db_xref="ASAP:ABE-0001898" /db_xref="UniProtKB/Swiss-Prot:P78285" /db_xref="EcoGene:EG13635" /db_xref="GeneID:947539" /translation="MPPSLRKAVAAAIGGGAIAIASVLITGPSGNDGLEGVSYIPYKD IVGVWTVCHGHTGKDIMLGKTYTKAECKALLNKDLATVARQINPYIKVDIPETTRGAL YSFVYNVGAGNFRTSTLLRKINQGDIKGACDQLRRWTYAGGKQWKGLMTRREIEREVC LWGQQ" gene 578107..578568 /gene="rzpD" /locus_tag="b0556" /gene_synonym="ECK0547; JW5079; Rz; ybcT" /db_xref="EcoGene:EG13636" /db_xref="GeneID:945929" CDS 578107..578568 /gene="rzpD" /locus_tag="b0556" /gene_synonym="ECK0547; JW5079; Rz; ybcT" /function="Phage or Prophage Related" /note="bacteriophage lambda endopeptidase homolog; completely contained in another CDS" /codon_start=1 /transl_table=11 /product="DLP12 prophage; putative murein endopeptidase" /protein_id="NP_415088.1" /db_xref="GI:16128539" /db_xref="ASAP:ABE-0001900" /db_xref="UniProtKB/Swiss-Prot:P75719" /db_xref="EcoGene:EG13636" /db_xref="GeneID:945929" /translation="MSRVTAIISALIICIIVSLSWAVNHYRDNAIAYKVQRDKNAREL KLANAAITDMQMRQRDVAALDAKYTKELADAKAENDALRDDVAAGRRRLHIKAVCQSV REATTASGVDNAASPRLADTAERDYFTLRERLITMQKQLEGTQKYINEQCR" gene 578327..578509 /gene="rzoD" /locus_tag="b4510" /gene_synonym="ECK0548; JW5080; Rz1" /db_xref="EcoGene:EG14380" /db_xref="GeneID:1450242" CDS 578327..578509 /gene="rzoD" /locus_tag="b4510" /gene_synonym="ECK0548; JW5080; Rz1" /function="Phage or Prophage Related" /GO_component="GO:0009279 - cell outer membrane" /note="completely contained in another CDS" /codon_start=1 /transl_table=11 /product="DLP12 prophage; putative lipoprotein" /protein_id="YP_588440.1" /db_xref="GI:94541098" /db_xref="ASAP:ABE-0285031" /db_xref="UniProtKB/Swiss-Prot:P58041" /db_xref="EcoGene:EG14380" /db_xref="GeneID:1450242" /translation="MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPRPPAWIMQPPP DWQTPLNGIISPSERG" gene complement(578600..578893) /gene="borD" /locus_tag="b0557" /gene_synonym="ECK0549; iss; JW0546; ybcU" /db_xref="EcoGene:EG13637" /db_xref="GeneID:948980" CDS complement(578600..578893) /gene="borD" /locus_tag="b0557" /gene_synonym="ECK0549; iss; JW0546; ybcU" /function="Phage or Prophage Related" /note="bacteriophage lambda Bor protein homolog" /codon_start=1 /transl_table=11 /product="DLP12 prophage; putative lipoprotein" /protein_id="NP_415089.1" /db_xref="GI:16128540" /db_xref="ASAP:ABE-0001902" /db_xref="UniProtKB/Swiss-Prot:P77330" /db_xref="EcoGene:EG13637" /db_xref="GeneID:948980" /translation="MKKMLLATALALLITGCAQQTFTVQNKQTAVAPKETITHHFFVS GIGQKKTVDAAKICGGAENVVKTETQQTFVNGLLGFITLGIYTPLEARVYCSK" gene complement(579184..579594) /gene="ybcV" /locus_tag="b0558" /gene_synonym="ECK0550; JW5081" /db_xref="EcoGene:EG13638" /db_xref="GeneID:945178" CDS complement(579184..579594) /gene="ybcV" /locus_tag="b0558" /gene_synonym="ECK0550; JW5081" /function="Phage or Prophage Related" /note="putative an envelop protein" /codon_start=1 /transl_table=11 /product="DLP12 prophage; uncharacterized protein" /protein_id="NP_415090.2" /db_xref="GI:90111149" /db_xref="ASAP:ABE-0001907" /db_xref="UniProtKB/Swiss-Prot:P77598" /db_xref="EcoGene:EG13638" /db_xref="GeneID:945178" /translation="MAQVAIFKEIFDQVRKDLNCELFYSELKRHNVSHYIYYLATDNI HIVLENDNTVLIKGLKKVVNVKFSRNTHLIETSYDRLKSREITFQQYRENLAKAGVFR WITNIHEHKRYYYTFDNSLLFTESIQNTTQIFPR" gene 579880..580086 /gene="ybcW" /locus_tag="b0559" /gene_synonym="ECK0551; JW0548" /db_xref="EcoGene:EG13639" /db_xref="GeneID:945175" CDS 579880..580086 /gene="ybcW" /locus_tag="b0559" /gene_synonym="ECK0551; JW0548" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="DLP12 prophage; uncharacterized protein" /protein_id="NP_415091.1" /db_xref="GI:16128542" /db_xref="ASAP:ABE-0001912" /db_xref="UniProtKB/Swiss-Prot:P64435" /db_xref="EcoGene:EG13639" /db_xref="GeneID:945175" /translation="MNKEQSADDPSVDLIRVKNMLNSTISMSYPDVVIACIEHKVSLE AFRAIEAALVKHDNNMKDYSLVVD" gene complement(580251..580445) /gene="ylcI" /locus_tag="b4589" /gene_synonym="ECK4399" /db_xref="EcoGene:EG14444" /db_xref="GeneID:5061499" CDS complement(580251..580445) /gene="ylcI" /locus_tag="b4589" /gene_synonym="ECK4399" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="DUF3950 family protein, DLP12 prophage" /protein_id="YP_001165309.1" /db_xref="GI:145698229" /db_xref="UniProtKB/Swiss-Prot:A5A607" /db_xref="EcoGene:EG14444" /db_xref="GeneID:5061499" /translation="MSTKNRTRRTTTRNIRFPNQMIEQINIALEQKGSGNFSAWVIEA CRRRLTSEKRAYTSIKSDEE" gene 580834..581379 /gene="nohD" /locus_tag="b0560" /gene_synonym="ECK0552; JW0549; nohB" /db_xref="EcoGene:EG11635" /db_xref="GeneID:945172" CDS 580834..581379 /gene="nohD" /locus_tag="b0560" /gene_synonym="ECK0552; JW0549; nohB" /function="Phage or Prophage Related" /note="bacteriophage DNA packaging protein" /codon_start=1 /transl_table=11 /product="DLP12 prophage; DNA packaging protein" /protein_id="NP_415092.1" /db_xref="GI:16128543" /db_xref="ASAP:ABE-0001915" /db_xref="UniProtKB/Swiss-Prot:P31062" /db_xref="EcoGene:EG11635" /db_xref="GeneID:945172" /translation="MEVNKKQLADIFGASIRTIQNWQEQGMPVLRGGGKGNEVLYDSA AVIKWYAERDAEIENEKLRREVEELLQASETDLQPGTIEYERHRLTRAQADAQELKNA RDSAEVVETAFCTFVLSRIAGEIASILDGIPLSVQRRFPELENRHVDFLKRDIIKAMN KAAALDELIPGLLSEYIEQSG" gene 581354..581662 /gene="aaaD" /locus_tag="b4634" /gene_synonym="ECK4439; ylcF" /pseudo /db_xref="EcoGene:EG14346" /db_xref="GeneID:5625560" CDS 581354..581662 /gene="aaaD" /locus_tag="b4634" /gene_synonym="ECK4439; ylcF" /note="pseudogene; DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="EcoGene:EG14346" /db_xref="GeneID:5625560" gene 581660..582097 /gene="tfaD" /locus_tag="b0561" /gene_synonym="ECK0553; JW5815; ybcX" /pseudo /db_xref="EcoGene:EG13640" /db_xref="GeneID:945171" CDS 581660..582097 /gene="tfaD" /locus_tag="b0561" /gene_synonym="ECK0553; JW5815; ybcX" /note="pseudogene, DLP12 prophage; tail fiber assembly protein family;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0001917" /db_xref="UniProtKB/Swiss-Prot:P77699" /db_xref="EcoGene:EG13640" /db_xref="GeneID:945171" gene complement(582152..582806) /gene="ybcY" /locus_tag="b0562" /gene_synonym="ECK0554; JW0551" /pseudo /db_xref="EcoGene:EG13641" /db_xref="GeneID:945170" CDS complement(join(582152..582804,582803..582806)) /gene="ybcY" /locus_tag="b0562" /gene_synonym="ECK0554; JW0551" /note="pseudogene, DLP12 prophage; methyltransferase homology;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0001919" /db_xref="UniProtKB/Swiss-Prot:P77460" /db_xref="EcoGene:EG13641" /db_xref="GeneID:945170" gene 582953..583135 /gene="tfaX" /locus_tag="b0563" /gene_synonym="ECK0555; JW0552; ylcE" /pseudo /db_xref="EcoGene:EG14317" /db_xref="GeneID:945183" CDS 582953..583135 /gene="tfaX" /locus_tag="b0563" /gene_synonym="ECK0555; JW0552; ylcE" /note="pseudogene, DLP12 prophage;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0001926" /db_xref="UniProtKB/Swiss-Prot:P77087" /db_xref="EcoGene:EG14317" /db_xref="GeneID:945183" gene 583681..584430 /gene="appY" /locus_tag="b0564" /gene_synonym="ECK0556; JW0553" /db_xref="EcoGene:EG10050" /db_xref="GeneID:948797" CDS 583681..584430 /gene="appY" /locus_tag="b0564" /gene_synonym="ECK0556; JW0553" /function="regulator; Central intermediary metabolism: Pool, multipurpose conversions; Phage or Prophage Related" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0042594 - response to starvation; GO:0006350 - transcription" /note="regulatory protein affecting appA and other genes" /codon_start=1 /transl_table=11 /product="global transcriptional activator; DLP12 prophage" /protein_id="NP_415096.1" /db_xref="GI:16128547" /db_xref="ASAP:ABE-0001929" /db_xref="UniProtKB/Swiss-Prot:P05052" /db_xref="EcoGene:EG10050" /db_xref="GeneID:948797" /translation="MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVC PSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIAD SHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAE LIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYF ICAFKDYYGVTPSHYFEKIIGVTDGINKTID" gene complement(584680..585633) /gene="ompT" /locus_tag="b0565" /gene_synonym="ECK0557; JW0554" /db_xref="EcoGene:EG10673" /db_xref="GeneID:945185" CDS complement(584680..585633) /gene="ompT" /locus_tag="b0565" /gene_synonym="ECK0557; JW0554" /EC_number="3.4.23.49" /function="enzyme; Outer membrane constituents; Phage or Prophage Related" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="outer membrane protein 3b (a), protease VII" /codon_start=1 /transl_table=11 /product="DLP12 prophage; outer membrane protease VII; outer membrane protein 3b" /protein_id="NP_415097.1" /db_xref="GI:16128548" /db_xref="ASAP:ABE-0001931" /db_xref="UniProtKB/Swiss-Prot:P09169" /db_xref="EcoGene:EG10673" /db_xref="GeneID:945185" /translation="MRAKLLGIVLTTPIAISSFASTETLSFTPDNINADISLGTLSGK TKERVYLAEEGGRKVSQLDWKFNNAAIIKGAINWDLMPQISIGAAGWTTLGSRGGNMV DQDWMDSSNPGTWTDESRHPDTQLNYANEFDLNIKGWLLNEPNYRLGLMAGYQESRYS FTARGGSYIYSSEEGFRDDIGSFPNGERAIGYKQRFKMPYIGLTGSYRYEDFELGGTF KYSGWVESSDNDEHYDPGKRITYRSKVKDQNYYSVAVNAGYYVTPNAKVYVEGAWNRV TNKKGNTSLYDHNNNTSDYSKNGAGIENYNFITTAGLKYTF" gene 586057..586101 /gene="pauD" /locus_tag="b4635" /gene_synonym="ECK4463" /pseudo /db_xref="EcoGene:EG31172" /db_xref="GeneID:5625561" tRNA 586057..586101 /gene="pauD" /locus_tag="b4635" /gene_synonym="ECK4463" /product="tRNA-OTHER" /pseudo /db_xref="EcoGene:EG31172" /db_xref="GeneID:5625561" gene complement(586147..586908) /gene="envY" /locus_tag="b0566" /gene_synonym="ECK0558; JW0555" /db_xref="EcoGene:EG10268" /db_xref="GeneID:949114" CDS complement(586147..586908) /gene="envY" /locus_tag="b0566" /gene_synonym="ECK0558; JW0555" /function="structural component; Outer membrane constituents" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="envelope protein; thermoregulation of porin biosynthesis" /codon_start=1 /transl_table=11 /product="porin thermoregulatory transcriptional activator" /protein_id="NP_415098.1" /db_xref="GI:16128549" /db_xref="ASAP:ABE-0001935" /db_xref="UniProtKB/Swiss-Prot:P10805" /db_xref="EcoGene:EG10268" /db_xref="GeneID:949114" /translation="MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNV IELSTLNHVLITHINRNIINDYLLFLNKNLTCVKPWSRLATPVIACHSRTPEVFRLAA NHSKQQPSRPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQ HYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQ LCGYSSTSYFISVFKAFYGLTPLNYLAKQRQKVMW" gene complement(587091..587981) /gene="ybcH" /locus_tag="b0567" /gene_synonym="ECK0559; JW0556" /db_xref="EcoGene:EG12448" /db_xref="GeneID:945186" CDS complement(587091..587981) /gene="ybcH" /locus_tag="b0567" /gene_synonym="ECK0559; JW0556" /codon_start=1 /transl_table=11 /product="PRK09936 family protein" /protein_id="NP_415099.1" /db_xref="GI:16128550" /db_xref="ASAP:ABE-0001937" /db_xref="UniProtKB/Swiss-Prot:P37325" /db_xref="EcoGene:EG12448" /db_xref="GeneID:945186" /translation="MRKFIFVLLTLLLVSPFSFAMKGIIWQPQNRDSQVTDTQWQGLM SQLRLQGFDTLVLQWTRYGDAFTQPEQRTLLFKRAAAAQQAGLKLIVGLNADPEFFMH QKQSSAALESYLNRLLAADLQQARLWSAAPGITPDGWYISAEIDDLNWRSEAARQPLL TWLNNAQRLISDVSAKPVYISSFFAGNMSPDGYRQLLEHVKATGVNVWVQDGSGVDKL TAEQRERYLQASADCQSPAPASGVVYELFVAGKGKTFTAKPKPDAEIASLLAKRSSCG KDTLYFSLRYLPVAHGILEY" gene complement(587982..590954) /gene="nfrA" /locus_tag="b0568" /gene_synonym="ECK0560; JW0557" /db_xref="EcoGene:EG11740" /db_xref="GeneID:944741" CDS complement(587982..590954) /gene="nfrA" /locus_tag="b0568" /gene_synonym="ECK0560; JW0557" /function="membrane; Phage-related functions and prophages" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="bacteriophage N4 receptor, outer membrane protein" /codon_start=1 /transl_table=11 /product="bacteriophage N4 receptor, outer membrane subunit" /protein_id="NP_415100.1" /db_xref="GI:16128551" /db_xref="ASAP:ABE-0001939" /db_xref="UniProtKB/Swiss-Prot:P31600" /db_xref="EcoGene:EG11740" /db_xref="GeneID:944741" /translation="MKENNLNRVIGWSGLLLTSLLSTSALADNIGTSAEELGLSDYRH FVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARL LLEDQLKRHPGDARLERSLAAIPVEVKSVTTVEELLAQQKACDAAPTLRCRSEVGQNA LRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLS AAERRQWFDVLLAGQLDDRILALQSQGIFTDPQSYITYATALAYRGEKARLQHYLIEN KPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDA AQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQN EQSREAADLLLQRYPFQGDARVSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQR QPSAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDR WLQQAEKRGLGSNALYWWLHAQRYIPGQPELALNDLTRSINIAPSANAYVARATIYRQ RHNVPAAVSDLRAALELEPNNSNTQAALGYALWDSGDIAQSREMLEPAHKGLPDDPAL IRQLAYVNQRLDDMPATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRR WTFSFDSSIGLRSGAMSTANNNVGGAAPGKSYRSYGQLEAEYRIGRNMLLEGDLLSVY SRVFADTGENGVMMPVKNPMSGTGLRWKPLRDQIFFIAVEQQLPLNGQNGASDTMLRA SASFFNGGKYSDEWHPNGSGWFAQNLYLDAAQYIRQDIQAWTADYRVSWHQKVANGQT IEPYAHVQDNGYRDKGTQGAQLGGVGVRWNIWTGETHYDAWPHKVSLGVEYQHTFKAI NQRNGERNNAFLTIGVHW" gene complement(590941..593178) /gene="nfrB" /locus_tag="b0569" /gene_synonym="ECK0561; JW0558" /db_xref="EcoGene:EG11739" /db_xref="GeneID:945849" CDS complement(590941..593178) /gene="nfrB" /locus_tag="b0569" /gene_synonym="ECK0561; JW0558" /function="membrane; Phage-related functions and prophages" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="bacteriophage N4 receptor, subunit, inner membrane protein" /codon_start=1 /transl_table=11 /product="bacteriophage N4 receptor, inner membrane subunit" /protein_id="NP_415101.1" /db_xref="GI:16128552" /db_xref="ASAP:ABE-0001942" /db_xref="UniProtKB/Swiss-Prot:P0AFA5" /db_xref="EcoGene:EG11739" /db_xref="GeneID:945849" /translation="MDWLLDVFATWLYGLKVIAITLAVIMFISGLDDFFIDVVYWVRR IKRKLSVYRRYPRMSYRELYKPDEKPLAIMVPAWNETGVIGNMAELAATTLDYENYHI FVGTYPNDPDTQRDVDEVCARFPNVHKVVCARPGPTSKADCLNNVLDAITQFERSANF AFAGFILHDAEDVISPMELRLFNYLVERKDLIQIPVYPFEREWTHFTSMTYIDEFSEL HGKDVPVREALAGQVPSAGVGTCFSRRAVTALLADGDGIAFDVQSLTEDYDIGFRLKE KGMTEIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSTAVRQKSRWIIGI VFQGFKTHKWTSSLTLNYFLWRDRKGAISNFVSFLAMLVMIQLLLLLAYESLWPDAWH FLSIFSGSAWLMTLLWLNFGLMVNRIVQRVIFVTGYYGLTQGLLSVLRLFWGNLINFM ANWRALKQVLQHGDPRRVAWDKTTHDFPSVTGDTRSLRPLGQILLENQVITEEQLDTA LRNRVEGLRLGGSMLMQGLISAEQLAQALAEQNGVAWESIDAWQIPSSLIAEMPASVA LHYAVLPLRLENDELIVGSEDGIDPVSLAALTRKVGRKVRYVIVLRGQIVTGLRHWYA RRRGHDPRAMLYNAVQHQWLTEQQAGEIWRQYVPHQFLFAEILTTLGHINRSAINVLL LRHERSSLPLGKFLVTEGVISQETLDRVLTIQRELQVSMQSLLLKAGLNTEQVAQLES ENEGE" gene complement(593328..594770) /gene="cusS" /locus_tag="b0570" /gene_synonym="ECK0562; JW5082; silS; ybcZ" /db_xref="EcoGene:EG13642" /db_xref="GeneID:945978" CDS complement(593328..594770) /gene="cusS" /locus_tag="b0570" /gene_synonym="ECK0562; JW5082; silS; ybcZ" /function="putative regulator; Not classified" /GO_component="GO:0019866 - organelle inner membrane" /GO_process="GO:0006464 - protein modification process" /codon_start=1 /transl_table=11 /product="copper-sensing histidine kinase in two-component regulatory system with CusR" /protein_id="NP_415102.1" /db_xref="GI:16128553" /db_xref="ASAP:ABE-0001946" /db_xref="UniProtKB/Swiss-Prot:P77485" /db_xref="EcoGene:EG13642" /db_xref="GeneID:945978" /translation="MVSKPFQRPFSLATRLTFFISLATIAAFFAFAWIMIHSVKVHFA EQDINDLKEISATLERVLNHPDETQARRLMTLEDIVSGYSNVLISLADSQGKTVYHSP GAPDIREFTRDAIPDKDAQGGEVYLLSGPTMMMPGHGHGHMEHSNWRMINLPVGPLVD GKPIYTLYIALSIDFHLHYINDLMNKLIMTASVISILIVFIVLLAVHKGHAPIRSVSR QIQNITSKDLDVRLDPQTVPIELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTP ITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKK MLNLADEVGKVFDFFEALAEDRGVELRFVGDKCQVAGDPLMLRRALSNLLSNALRYTP TGETIVVRCQTVDHLVQVIVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLA IVKSIVVAHKGTVAVTSDARGTRFVITLPA" gene complement(594760..595443) /gene="cusR" /locus_tag="b0571" /gene_synonym="ECK0563; JW0560; silR; ylcA" /db_xref="EcoGene:EG13851" /db_xref="GeneID:945003" CDS complement(594760..595443) /gene="cusR" /locus_tag="b0571" /gene_synonym="ECK0563; JW0560; silR; ylcA" /function="putative regulator; Not classified" /GO_process="GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with CusS" /protein_id="NP_415103.1" /db_xref="GI:16128554" /db_xref="ASAP:ABE-0001948" /db_xref="UniProtKB/Swiss-Prot:P0ACZ8" /db_xref="EcoGene:EG13851" /db_xref="GeneID:945003" /translation="MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGD YDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKP FAFAELLARVRTLLRRGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLE FFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVG YMLEVPDGQ" gene 595600..596973 /gene="cusC" /locus_tag="b0572" /gene_synonym="ECK0564; ibeB; JW0561; silC; ylcB" /db_xref="EcoGene:EG14233" /db_xref="GeneID:946288" CDS 595600..596973 /gene="cusC" /locus_tag="b0572" /gene_synonym="ECK0564; ibeB; JW0561; silC; ylcB" /function="putative transport; Drug/analog sensitivity" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="copper/silver efflux system, outer membrane component" /protein_id="NP_415104.1" /db_xref="GI:16128555" /db_xref="ASAP:ABE-0001958" /db_xref="UniProtKB/Swiss-Prot:P77211" /db_xref="EcoGene:EG14233" /db_xref="GeneID:946288" /translation="MSPCKLLPFCVALALTGCSLAPDYQRPAMPVPQQFSLSQNGLVN AADNYQNAGWRTFFVDNQVKTLISEALVNNRDLRMATLKVQEARAQYRLTDADRYPQL NGEGSGSWSGNLKGNTATTREFSTGLNASFDLDFFGRLKNMSEAERQNYLATEEAQRA VHILLVSNVAQSYFNQQLAYAQLQIAEETLRNYQQSYAFVEKQLLTGSSNVLALEQAR GVIESTRSDIAKRQGELAQANNALQLLLGSYGKLPQAQTVNSDSLQSVKLPAGLSSQI LLQRPDIMEAEHALMAANANIGAARAAFFPSISLTSGISTASSDLSSLFNASSGMWNF IPKIEIPIFNAGRNQANLDIAEIRQQQSVVNYEQKIQNAFKEVADALALRQSLNDQIS AQQRYLASLQITLQRARALYQHGAVSYLEVLDAERSLFATRQTLLDLNYARQVNEISL YTALGGG" gene 597131..597463 /gene="cusF" /locus_tag="b0573" /gene_synonym="cusX; ECK0565; JW0562; silF; ylcC" /db_xref="EcoGene:EG14234" /db_xref="GeneID:945188" CDS 597131..597463 /gene="cusF" /locus_tag="b0573" /gene_synonym="cusX; ECK0565; JW0562; silF; ylcC" /codon_start=1 /transl_table=11 /product="periplasmic copper- and silver-binding protein" /protein_id="NP_415105.1" /db_xref="GI:16128556" /db_xref="ASAP:ABE-0001967" /db_xref="UniProtKB/Swiss-Prot:P77214" /db_xref="EcoGene:EG14234" /db_xref="GeneID:945188" /translation="MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVV KGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSL LQDIKVSQ" gene 597479..598702 /gene="cusB" /locus_tag="b0574" /gene_synonym="ECK0566; JW0563; silB; ylcD" /db_xref="EcoGene:EG14235" /db_xref="GeneID:945189" CDS 597479..598702 /gene="cusB" /locus_tag="b0574" /gene_synonym="ECK0566; JW0563; silB; ylcD" /function="putative transport; Drug/analog sensitivity" /GO_process="GO:0042493 - response to drug" /codon_start=1 /transl_table=11 /product="copper/silver efflux system, membrane fusion protein" /protein_id="NP_415106.1" /db_xref="GI:16128557" /db_xref="ASAP:ABE-0001969" /db_xref="UniProtKB/Swiss-Prot:P77239" /db_xref="EcoGene:EG14235" /db_xref="GeneID:945189" /translation="MKKIALIIGSMIAGGIISAAGFTWVAKAEPPAEKTSTAERKILF WYDPMYPNTRFDKPGKSPFMDMDLVPKYADEESSASGVRIDPTQTQNLGVKTATVTRG PLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVE AQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTRFTLKAPIDGVI TAFDLRAGMNIAKDNVVAKIQGMDPVWVTAAIPESIAWLVKDASQFTLTVPARPDKTL TIRKWTLLPGVDAATRTLQLRLEVDNADEALKPGMNAWLQLNTASEPMLLIPSQALID TGSEQRVITVDADGRFVPKRVAVFQASQGVTALRSGLAEGEKVVSSGLFLIDSEANIS GALERMRSESATHAH" gene 598714..601857 /gene="cusA" /locus_tag="b0575" /gene_synonym="ECK0567; JW0564; silA; ybdE" /db_xref="EcoGene:EG12367" /db_xref="GeneID:945191" CDS 598714..601857 /gene="cusA" /locus_tag="b0575" /gene_synonym="ECK0567; JW0564; silA; ybdE" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="copper/silver efflux system, membrane component" /protein_id="NP_415107.1" /db_xref="GI:16128558" /db_xref="ASAP:ABE-0001971" /db_xref="UniProtKB/Swiss-Prot:P38054" /db_xref="EcoGene:EG12367" /db_xref="GeneID:945191" /translation="MIEWIIRRSVANRFLVLMGALFLSIWGTWTIINTPVDALPDLSD VQVIIKTSYPGQAPQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTD PYWARSRVLEYLNQVQGKLPAGVSAELGPDATGVGWIYEYALVDRSGKHDLADLRSLQ DWFLKYELKTIPDVAEVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAG GSSIELAEAEYMVRASGYLQTLDDFNHIVLKASENGVPVYLRDVAKVQIGPEMRRGIA ELNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRA IDNLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMS LGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPAL FISLLIITLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGK IPPESSNPLNRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQIN EGDLLYMPSTLPGISAAEAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMV ETTIQLKPQEQWRPGMTMDKIIEELDNTVRLPGLANLWVPPIRNRIDMLSTGIKSPIG IKVSGTVLADIDAMAEQIEEVARTVPGVASALAERLEGGRYINVEINREKAARYGMTV ADVQLFVTSAVGGAMVGETVEGIARYPINLRYPQSWRDSPQALRQLPILTPMKQQITL ADVADIKVSTGPSMLKTENARPTSWIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSV AFSGQFELLERANHKLKLMVPMTLMIIFVLLYLAFRRVGEALLIISSVPFALVGGIWL LWWMGFHLSVATGTGFIALAGVAAEFGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEA LYHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRIAAPMIGGMITAPLLSLFI IPAAYKLMWLHRHRVRK" gene 601959..603335 /gene="pheP" /locus_tag="b0576" /gene_synonym="ECK0568; JW0565" /db_xref="EcoGene:EG10708" /db_xref="GeneID:945199" CDS 601959..603335 /gene="pheP" /locus_tag="b0576" /gene_synonym="ECK0568; JW0565" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009063 - cellular amino acid catabolic process; GO:0009094 - L-phenylalanine biosynthetic process" /note="phenylalanine-specific transport system" /codon_start=1 /transl_table=11 /product="phenylalanine transporter" /protein_id="NP_415108.1" /db_xref="GI:16128559" /db_xref="ASAP:ABE-0001976" /db_xref="UniProtKB/Swiss-Prot:P24207" /db_xref="EcoGene:EG10708" /db_xref="GeneID:945199" /translation="MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLG IGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFL SGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGET EFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVI MFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSN SSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTR VSRRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRF RAAMRRQGRETQFKALLYPFGNYLCIAFLGMILLLMCTMDDMRLSAILLPVWIVFLFM AFKTLRRK" gene complement(603416..604663) /gene="ybdG" /locus_tag="b0577" /gene_synonym="ECK0569; JW0566; mscM" /db_xref="EcoGene:EG12620" /db_xref="GeneID:946243" CDS complement(603416..604663) /gene="ybdG" /locus_tag="b0577" /gene_synonym="ECK0569; JW0566; mscM" /function="transport; Transport of small molecules: Other" /GO_component="GO:0042597 - periplasmic space" /note="putative transport" /codon_start=1 /transl_table=11 /product="mechanosensitive channel protein, miniconductance" /protein_id="NP_415109.1" /db_xref="GI:16128560" /db_xref="ASAP:ABE-0001978" /db_xref="UniProtKB/Swiss-Prot:P0AAT4" /db_xref="EcoGene:EG12620" /db_xref="GeneID:946243" /translation="MQDLISQVEDLAGIEIDHTTSMVMIFGIIFLTAVVVHIILHWVV LRTFEKRAIASSRLWLQIITQNKLFHRLAFTLQGIIVNIQAVFWLQKGTEAADILTTC AQLWIMMYALLSVFSLLDVILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLL IGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGA VIDIGLTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIRF LDEDEMQRLNKAHLLKPYLTSRHQEINEWNRQQGSTESVLNLRRMTNIGTFRAYLNEY LRNHPRIRKDMTLMVRQLAPGDNGLPLEIYAFTNTVVWLEYESIQADIFDHIFAIVEE FGLRLHQSPTGNDIRSLAGAFKQ" gene complement(604771..605424) /gene="nfsB" /locus_tag="b0578" /gene_synonym="dprA; ECK0570; JW0567; nfnB; nfsI; ntr" /db_xref="EcoGene:EG20151" /db_xref="GeneID:945778" CDS complement(604771..605424) /gene="nfsB" /locus_tag="b0578" /gene_synonym="dprA; ECK0570; JW0567; nfnB; nfsI; ntr" /EC_number="1.5.1.34" /function="enzyme; Drug/analog sensitivity" /experiment="N-terminus verified by Edman degradation: PMID 1472094,3060113,9298646" /GO_process="GO:0042493 - response to drug" /note="oxygen-insensitive NAD(P)H nitroreductase" /codon_start=1 /transl_table=11 /product="dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive" /protein_id="NP_415110.1" /db_xref="GI:16128561" /db_xref="ASAP:ABE-0001981" /db_xref="UniProtKB/Swiss-Prot:P38489" /db_xref="EcoGene:EG20151" /db_xref="GeneID:945778" /translation="MDIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQ PWHFIVASTEEGKARVAKSAAGNYVFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQE DADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLD AVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV" gene complement(605518..605886) /gene="ybdF" /locus_tag="b0579" /gene_synonym="ECK0571; JW5083" /db_xref="EcoGene:EG12619" /db_xref="GeneID:948302" CDS complement(605518..605886) /gene="ybdF" /locus_tag="b0579" /gene_synonym="ECK0571; JW5083" /codon_start=1 /transl_table=11 /product="DUF419 family protein" /protein_id="NP_415111.1" /db_xref="GI:16128562" /db_xref="ASAP:ABE-0001986" /db_xref="UniProtKB/Swiss-Prot:P0AAT2" /db_xref="EcoGene:EG12619" /db_xref="GeneID:948302" /translation="MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSS ELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLIND SWNLVVDGLAKRDQKRVRPG" gene complement(605951..606199) /gene="ybdJ" /locus_tag="b0580" /gene_synonym="ECK0572; JW0569" /db_xref="EcoGene:EG13643" /db_xref="GeneID:947183" CDS complement(605951..606199) /gene="ybdJ" /locus_tag="b0580" /gene_synonym="ECK0572; JW0569" /codon_start=1 /transl_table=11 /product="DUF1158 family putative inner membrane protein" /protein_id="NP_415112.1" /db_xref="GI:16128563" /db_xref="ASAP:ABE-0001988" /db_xref="UniProtKB/Swiss-Prot:P77506" /db_xref="EcoGene:EG13643" /db_xref="GeneID:947183" /translation="MKHPLETLTTAAGILLMAFLSCLLLPAPALGLALAQKLVTMFHL MDLSQLYTLLFCLWFLVLGAIEYFVLRFIWRRWFSLAD" gene complement(606265..607383) /gene="ybdK" /locus_tag="b0581" /gene_synonym="ECK0573; JW0570" /db_xref="EcoGene:EG13644" /db_xref="GeneID:947246" CDS complement(606265..607383) /gene="ybdK" /locus_tag="b0581" /gene_synonym="ECK0573; JW0570" /EC_number="6.3.2.2" /codon_start=1 /transl_table=11 /product="weak gamma-glutamyl:cysteine ligase" /protein_id="NP_415113.1" /db_xref="GI:16128564" /db_xref="ASAP:ABE-0001992" /db_xref="UniProtKB/Swiss-Prot:P77213" /db_xref="EcoGene:EG13644" /db_xref="GeneID:947246" /translation="MPLPDFHVSEPFTLGIELEMQVVNPPGYDLSQDSSMLIDAVKNK ITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQKVVLQAATDHHLEICGGGTHPF QKWQRQEVCDNERYQRTLENFGYLIQQATVFGQHVHVGCASGDDAIYLLHGLSRFVPH FIALSAASPYMQGTDTRFASSRPNIFSAFPDNGPMPWVSNWQQFEALFRCLSYTTMID SIKDLHWDIRPSPHFGTVEVRVMDTPLTLSHAVNMAGLIQATAHWLLTERPFKHQEKD YLLYKFNRFQACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPSAHKIGASSAIEAL HRQVVSGLNEAQLMRDFVADGGSLIGLVKKHCEIWAGD" gene 607734..607792 /gene="sokE" /locus_tag="b4700" /gene_synonym="ECK4512" /db_xref="EcoGene:EG31186" /db_xref="GeneID:8764969" ncRNA 607734..607792 /ncRNA_class="antisense_RNA" /gene="sokE" /locus_tag="b4700" /gene_synonym="ECK4512" /product="sRNA at remnant mokE/hokE locus" /db_xref="EcoGene:EG31186" /db_xref="GeneID:8764969" gene 607836..607988 /gene="hokE" /locus_tag="b4415" /gene_synonym="ECK0574; JW5084; ybdY" /db_xref="EcoGene:EG14302" /db_xref="GeneID:2847715" CDS 607836..607988 /gene="hokE" /locus_tag="b4415" /gene_synonym="ECK0574; JW5084; ybdY" /function="component of addiction module (incomplete)" /note="small toxic membrane polypeptide; the corresponding mokE lacks a start codon, and the regulatory RNA sokE has not been identified" /codon_start=1 /transl_table=11 /product="toxic polypeptide, small" /protein_id="YP_025295.1" /db_xref="GI:49176035" /db_xref="ASAP:ABE-0047279" /db_xref="UniProtKB/Swiss-Prot:P77091" /db_xref="EcoGene:EG14302" /db_xref="GeneID:2847715" /translation="MLTKYALAAVIVLCLTVLGFTLLVGDSLCEFTVKERNIEFKAVL AYEPKK" mobile_element 608007..609351 /mobile_element_type="insertion sequence:IS186B" gene 608065..609177 /gene="insL1" /locus_tag="b0582" /gene_synonym="ECK0016" /db_xref="EcoGene:EG40012" /db_xref="GeneID:945200" CDS 608065..609177 /gene="insL1" /locus_tag="b0582" /gene_synonym="ECK0016" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS186 transposase" /protein_id="NP_415114.1" /db_xref="GI:16128565" /db_xref="ASAP:ABE-0002007" /db_xref="UniProtKB/Swiss-Prot:P0CF92" /db_xref="EcoGene:EG40012" /db_xref="GeneID:945200" /translation="MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLL RLGLAYGPGGMSLREVTAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAVRAAV TGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRFA QTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGL DCGKNGETTVMIGNSGNKKAGAPFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQA ETLEAAGHVLLLTSLPEDEYSAEQVADCYRLRWQIELAFKRLKSLLHLDALRAKEPEL AKAWIFANLLAAFLIDDIIQPSLDFPPRSAGSEKKN" gene complement(609459..610079) /gene="entD" /locus_tag="b0583" /gene_synonym="ECK0575; JW5085" /db_xref="EcoGene:EG10262" /db_xref="GeneID:945194" CDS complement(609459..610079) /gene="entD" /locus_tag="b0583" /gene_synonym="ECK0575; JW5085" /EC_number="2.7.8.-" /function="enzyme; Biosynthesis of cofactors, carriers: Enterochelin" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009239 - enterobactin biosynthetic process" /note="enterochelin synthetase, component D" /codon_start=1 /transl_table=11 /product="phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex" /protein_id="NP_415115.2" /db_xref="GI:345452717" /db_xref="ASAP:ABE-0002009" /db_xref="UniProtKB/Swiss-Prot:P19925" /db_xref="EcoGene:EG10262" /db_xref="GeneID:945194" /translation="MKTTHTSLPFAGHTLHFVEFDPANFCEQDLLWLPHYAQLQHAGR KRKTEHLAGRIAAVYALREYGYKCVPAIGELRQPVWPAEVYGSISHCGTTALAVVSRQ PIGIDIEEIFSVQTARELTDNIITPAEHERLADCGLAFSLALTLAFSAKESAFKASEI QTDAGFLDYQIISWNKQQVIIHRENEMFAVHWQIKEKIVITLCQHD" repeat_region 610117..610214 /note="RIP54 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(610254..612494) /gene="fepA" /locus_tag="b0584" /gene_synonym="cbr; cbt; ECK0576; fep; feuB; JW5086" /db_xref="EcoGene:EG10293" /db_xref="GeneID:945193" CDS complement(610254..612494) /gene="fepA" /locus_tag="b0584" /gene_synonym="cbr; cbt; ECK0576; fep; feuB; JW5086" /function="membrane; Transport of small molecules: Cations" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006826 - iron ion transport" /note="outer membrane receptor for ferric enterobactin (enterochelin) and colicins B and D" /codon_start=1 /transl_table=11 /product="ferrienterobactin outer membrane transporter" /protein_id="NP_415116.1" /db_xref="GI:16128567" /db_xref="ASAP:ABE-0002014" /db_xref="UniProtKB/Swiss-Prot:P05825" /db_xref="EcoGene:EG10293" /db_xref="GeneID:945193" /translation="MNKKIHSLALLVNLGIYGVAQAQEPTDTPVSHDDTIVVTAAEQN LQAPGVSTITADEIRKNPVARDVSKIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPE NTLILIDGKPVSSRNSVRQGWRGERDTRGDTSWVPPEMIERIEVLRGPAAARYGNGAA GGVVNIITKKGSGEWHGSWDAYFNAPEHKEEGATKRTNFSLTGPLGDEFSFRLYGNLD KTQADAWDINQGHQSARAGTYATTLPAGREGVINKDINGVVRWDFAPLQSLELEAGYS RQGNLYAGDTQNTNSDSYTRSKYGDETNRLYRQNYALTWNGGWDNGVTTSNWVQYEHT RNSRIPEGLAGGTEGKFNEKATQDFVDIDLDDVMLHSEVNLPIDFLVNQTLTLGTEWN QQRMKDLSSNTQALTGTNTGGAIDGVSTTDRSPYSKAEIFSLFAENNMELTDSTIVTP GLRFDHHSIVGNNWSPALNISQGLGDDFTLKMGIARAYKAPSLYQTNPNYILYSKGQG CYASAGGCYLQGNDDLKAETSINKEIGLEFKRDGWLAGVTWFRNDYRNKIEAGYVAVG QNAVGTDLYQWDNVPKAVVEGLEGSLNVPVSETVMWTNNITYMLKSENKTTGDRLSII PEYTLNSTLSWQAREDLSMQTTFTWYGKQQPKKYNYKGQPAVGPETKEISPYSIVGLS ATWDVTKNVSLTGGVDNLFDKRLWRAGNAQTTGDLAGANYIAGAGAYTYNEPGRTWYM SVNTHF" gene 612737..613939 /gene="fes" /locus_tag="b0585" /gene_synonym="ECK0577; JW0576" /db_xref="EcoGene:EG10299" /db_xref="GeneID:945181" CDS 612737..613939 /gene="fes" /locus_tag="b0585" /gene_synonym="ECK0577; JW0576" /function="enzyme; Transport of small molecules: Cations" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006826 - iron ion transport" /note="enterochelin esterase" /codon_start=1 /transl_table=11 /product="enterobactin/ferrienterobactin esterase" /protein_id="NP_415117.2" /db_xref="GI:635341462" /db_xref="ASAP:ABE-0002019" /db_xref="UniProtKB/Swiss-Prot:P13039" /db_xref="EcoGene:EG10299" /db_xref="GeneID:945181" /translation="MTALKVGSESWWQSKHGPEWQRLNDEMFEVTFWWRDPQGSEEYS TIKRVWVYITGVTDHHQNSQPQSMQRIAGTNVWQWTTQLNANWRGSYCFIPTERDDIF SVPSPDRLELREGWRKLLPQAIADPLNLQSWKGGRGHAVSALEMPQAPLQPGWDCPQA PEIPAKEIIWKSERLKKSRRVWIFTTGDATAEERPLAVLLDGEFWAQSMPVWPVLTSL THRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKAIAPFSDRADRTV VAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRGGQQEGVLLEKLKAGEVSAEG LRIVLEAGIREPMIMRANQALYAQLHPIKESIFWRQVDGGHDALCWRGGLMQGLIDLW QPLFHDRS" gene 613942..614160 /gene="ybdZ" /locus_tag="b4511" /gene_synonym="ECK0578; JW0577; mbtH" /db_xref="EcoGene:EG14353" /db_xref="GeneID:1450243" CDS 613942..614160 /gene="ybdZ" /locus_tag="b4511" /gene_synonym="ECK0578; JW0577; mbtH" /function="Enzyme; Biosynthesis of cofactors, carriers: Enterochelin" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="stimulator of EntF adenylation activity, MbtH-like" /protein_id="YP_588441.1" /db_xref="GI:94541099" /db_xref="ASAP:ABE-0285032" /db_xref="UniProtKB/Swiss-Prot:P18393" /db_xref="EcoGene:EG14353" /db_xref="GeneID:1450243" /translation="MAFSNPFDDPQGAFYILRNAQGQFSLWPQQCVLPAGWDIVCQPQ SQASCQQWLEAHWRTLTPTNFTQLQEAQ" gene 614157..618038 /gene="entF" /locus_tag="b0586" /gene_synonym="ECK0579; JW0578" /db_xref="EcoGene:EG10264" /db_xref="GeneID:945184" CDS 614157..618038 /gene="entF" /locus_tag="b0586" /gene_synonym="ECK0579; JW0578" /EC_number="2.7.7.-" /function="enzyme; Biosynthesis of cofactors, carriers: Enterochelin" /experiment="N-terminus verified by Edman degradation: PMID 1826089,2974033" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015937 - coenzyme A biosynthetic process; GO:0009239 - enterobactin biosynthetic process; GO:0006826 - iron ion transport; GO:0019184 - nonribosomal peptide biosynthetic process" /note="ATP-dependent serine activating enzyme (may be part of enterobactin synthase as component F)" /codon_start=1 /transl_table=11 /product="enterobactin synthase multienzyme complex component, ATP-dependent" /protein_id="NP_415118.1" /db_xref="GI:16128569" /db_xref="ASAP:ABE-0002021" /db_xref="UniProtKB/Swiss-Prot:P11454" /db_xref="EcoGene:EG10264" /db_xref="GeneID:945184" /translation="MSQHLPLVAAQPGIWMAEKLSELPSAWSVAHYVELTGEVDSPLL ARAVVAGLAQADTLRMRFTEDNGEVWQWVDDALTFELPEIIDLRTNIDPHGTAQALMQ ADLQQDLRVDSGKPLVFHQLIQVADNRWYWYQRYHHLLVDGFSFPAITRQIANIYCTW LRGEPTPASPFTPFADVVEEYQQYRESEAWQRDAAFWAEQRRQLPPPASLSPAPLPGR SASADILRLKLEFTDGEFRQLATQLSGVQRTDLALALAALWLGRLCNRMDYAAGFIFM RRLGSAALTATGPVLNVLPLGIHIAAQETLPELATRLAAQLKKMRRHQRYDAEQIVRD SGRAAGDEPLFGPVLNIKVFDYQLDIPDVQAQTHTLATGPVNDLELALFPDVHGDLSI EILANKQRYDEPTLIQHAERLKMLIAQFAADPALLCGDVDIMLPGEYAQLAQLNATQV EIPETTLSALVAEQAAKTPDAPALADARYLFSYREMREQVVALANLLRERGVKPGDSV AVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTDDQLPRF SDVPNLTSLCYNAPLTPQGSAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRL LWMQNHYPLTGEDVVAQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFF AEYGVTTTHFVPSMLAAFVASLTPQTARQSCATLKQVFCSGEALPADLCREWQQLTGA PLHNLYGPTEAAVDVSWYPAFGEELAQVRGSSVPIGYPVWNTGLRILDAMMHPVPPGV AGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDNGAVEYLGRS DDQLKIRGQRIELGEIDRVMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSG LPLDTSALQAQLRETLPPHMVPVVLLQLPQLPLSANGKLDRKALPLPELKAQAPGRAP KAGSETIIAAAFSSLLGCDVQDADADFFALGGHSLLAMKLAAQLSRQVARQVTPGQVM VASTVAKLATIIDAEEDSTRRMGFETILPLREGNGPTLFCFHPASGFAWQFSVLSRYL DPQWSIIGIQSPRPNGPMQTAANLDEVCEAHLATLLEQQPHGPYYLLGYSLGGTLAQG IAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGS TSTELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAWSPWIAEL DIYRQDCAHVDIISPGTFEKIGPIIRATLNR" gene 618254..619387 /gene="fepE" /locus_tag="b0587" /gene_synonym="ECK0580; JW0579" /db_xref="EcoGene:EG10297" /db_xref="GeneID:945180" CDS 618254..619387 /gene="fepE" /locus_tag="b0587" /gene_synonym="ECK0580; JW0579" /function="transport; Transport of small molecules: Cations" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006826 - iron ion transport" /note="ferric enterobactin (enterochelin) transport" /codon_start=1 /transl_table=11 /product="regulator of length of O-antigen component of lipopolysaccharide chains" /protein_id="NP_415119.1" /db_xref="GI:16128570" /db_xref="ASAP:ABE-0002023" /db_xref="UniProtKB/Swiss-Prot:P26266" /db_xref="EcoGene:EG10297" /db_xref="GeneID:945180" /translation="MSSLNIKQGSDAHFPDYPLASPSNNEIDLLNLISVLWRAKKTVM AVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQELEKSFTKLRVLDLDIKIDRTE AFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNAS KKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVKESLENVRNKLEIKTQFE KEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGAD GIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTPFKYQLSPSLPVKKD GPGKAIIVILSALIGGMVACGGVLLRYAMASRKQDAMMADHLV" gene complement(619384..620199) /gene="fepC" /locus_tag="b0588" /gene_synonym="ECK0581; JW0580" /db_xref="EcoGene:EG10295" /db_xref="GeneID:945201" CDS complement(619384..620199) /gene="fepC" /locus_tag="b0588" /gene_synonym="ECK0581; JW0580" /function="transport; Transport of small molecules: Cations" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006826 - iron ion transport" /note="ATP-binding component of ferric enterobactin transport" /codon_start=1 /transl_table=11 /product="ferrienterobactin ABC transporter ATPase" /protein_id="NP_415120.1" /db_xref="GI:16128571" /db_xref="ASAP:ABE-0002025" /db_xref="UniProtKB/Swiss-Prot:P23878" /db_xref="EcoGene:EG10295" /db_xref="GeneID:945201" /translation="MTESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGC GKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELV ARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALR EGKIVAQGAPKEIVTAELIERIYGLRCMIIDDPVAGTPLVVPLGRTAPSTANS" gene complement(620196..621188) /gene="fepG" /locus_tag="b0589" /gene_synonym="ECK0582; JW0581" /db_xref="EcoGene:EG10298" /db_xref="GeneID:945209" CDS complement(620196..621188) /gene="fepG" /locus_tag="b0589" /gene_synonym="ECK0582; JW0581" /function="transport; Transport of small molecules: Cations" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006826 - iron ion transport" /note="ferric enterobactin transport protein; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="iron-enterobactin ABC transporter permease" /protein_id="NP_415121.1" /db_xref="GI:16128572" /db_xref="ASAP:ABE-0002027" /db_xref="UniProtKB/Swiss-Prot:P23877" /db_xref="EcoGene:EG10298" /db_xref="GeneID:945209" /translation="MIYVSRRLLITCLLLVSACVVAGIWGLRSGAVTLETSQVFAALM GDAPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWS GVLVAMVLFGQDLTAIALSAMVGGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRAMLVA FNTWLLLKASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLE MGDDTACALGVSVERSRLLMMLVAVVLTAAATALAGPISFIALVAPHIARRISGTARW GLTQAALCGALLLLAADLCAQQLFMPYQLPVGVVTVSLGGIYLIVLLIQESRKK" gene complement(621185..622189) /gene="fepD" /locus_tag="b0590" /gene_synonym="ECK0583; JW0582" /db_xref="EcoGene:EG10296" /db_xref="GeneID:945214" CDS complement(621185..622189) /gene="fepD" /locus_tag="b0590" /gene_synonym="ECK0583; JW0582" /function="transport; Transport of small molecules: Cations" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006826 - iron ion transport" /note="ferric enterobactin (enterochelin) transport; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="ferrienterobactin ABC transporter permease" /protein_id="NP_415122.1" /db_xref="GI:16128573" /db_xref="ASAP:ABE-0002031" /db_xref="UniProtKB/Swiss-Prot:P23876" /db_xref="EcoGene:EG10296" /db_xref="GeneID:945214" /translation="MSGSVAVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEAF SGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGAS FAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAA VLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALN SLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAIVGPIAFIGLMMPHMARWLVGA DHRWSLPVTLLATPALLLFADIIGRVIVPGELRVSVVSAFIGAPVLIFLVRRKTRGGA " gene 622300..623550 /gene="entS" /locus_tag="b0591" /gene_synonym="ECK0584; JW0583; ybdA" /db_xref="EcoGene:EG11104" /db_xref="GeneID:946268" CDS 622300..623550 /gene="entS" /locus_tag="b0591" /gene_synonym="ECK0584; JW0583; ybdA" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport" /codon_start=1 /transl_table=11 /product="enterobactin exporter, iron-regulated" /protein_id="NP_415123.1" /db_xref="GI:16128574" /db_xref="ASAP:ABE-0002036" /db_xref="UniProtKB/Swiss-Prot:P24077" /db_xref="EcoGene:EG11104" /db_xref="GeneID:946268" /translation="MNKQSWLLNLSLLKTHPAFRAVFLARFISIVSLGLLGVAVPVQI QMMTHSTWQVGLSVTLTGGAMFVGLMVGGVLADRYERKKVILLARGTCGIGFIGLCLN ALLPEPSLLAIYLLGLWDGFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSV ISPMIGGLLLATGGVAWNYGLAAAGTFITLLPLLSLPALPPPPQPREHPLKSLLAGFR FLLASPLVGGIALLGGLLTMASAVRVLYPALADNWQMSAAQIGFLYAAIPLGAAIGAL TSGKLAHSARPGLLMLLSTLGSFLAIGLFGLMPMWILGVVCLALFGWLSAVSSLLQYT MLQTQTPEAMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGV LLLLVLVELRHFRQTPPQVTASDS" gene complement(623554..624510) /gene="fepB" /locus_tag="b0592" /gene_synonym="ECK0585; JW0584" /db_xref="EcoGene:EG10294" /db_xref="GeneID:947538" CDS complement(623554..624510) /gene="fepB" /locus_tag="b0592" /gene_synonym="ECK0585; JW0584" /function="transport; Transport of small molecules: Cations" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006826 - iron ion transport" /note="ferric enterobactin (enterochelin) binding protein; periplasmic component; periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="ferrienterobactin ABC transporter periplasmic binding protein" /protein_id="NP_415124.1" /db_xref="GI:16128575" /db_xref="ASAP:ABE-0002038" /db_xref="UniProtKB/Swiss-Prot:P0AEL6" /db_xref="EcoGene:EG10294" /db_xref="GeneID:947538" /translation="MRLAPLYRNALLLTGLLLSGIAAVQAADWPRQITDSRGTHTLES QPQRIVSTSVTLTGSLLAIDAPVIASGATTPNNRVADDQGFLRQWSKVAKERKLQRLY IGEPSAEAVAAQMPDLILISATGGDSALALYDQLSTIAPTLIINYDDKSWQSLLTQLG EITGHEKQAAERIAQFDKQLAAAKEQIKLPPQPVTAIVYTAAAHSANLWTPESAQGQM LEQLGFTLAKLPAGLNASQSQGKRHDIIQLGGENLAAGLNGESLFLFAGDQKDADAIY ANPLLAHLPAVQNKQVYALGTETFRLDYYSAMQVLDRLKALF" gene 624885..626060 /gene="entC" /locus_tag="b0593" /gene_synonym="ECK0586; fepF; JW0585" /db_xref="EcoGene:EG10261" /db_xref="GeneID:945511" CDS 624885..626060 /gene="entC" /locus_tag="b0593" /gene_synonym="ECK0586; fepF; JW0585" /EC_number="5.4.4.2" /function="enzyme; Biosynthesis of cofactors, carriers: Enterochelin" /experiment="N-terminus verified by Edman degradation: PMID 2521622" /GO_process="GO:0009239 - enterobactin biosynthetic process" /note="isochorismate hydroxymutase 2, enterochelin biosynthesis" /codon_start=1 /transl_table=11 /product="isochorismate synthase 1" /protein_id="NP_415125.1" /db_xref="GI:16128576" /db_xref="ASAP:ABE-0002047" /db_xref="UniProtKB/Swiss-Prot:P0AEJ2" /db_xref="EcoGene:EG10261" /db_xref="GeneID:945511" /translation="MDTSLAEEVQQTMATLAPNRFFFMSPYRSFTTSGCFARFDEPAV NGDSPDSPFQQKLAALFADAKAQGIKNPVMVGAIPFDPRQPSSLYIPESWQSFSRQEK QASARRFTRSQSLNVVERQAIPEQTTFEQMVARAAALTATPQVDKVVLSRLIDITTDA AIDSGVLLERLIAQNPVSYNFHVPLADGGVLLGASPELLLRKDGERFSSIPLAGSARR QPDEVLDREAGNRLLASEKDRHEHELVTQAMKEVLRERSSELHVPSSPQLITTPTLWH LATPFEGKANSQENALTLACLLHPTPALSGFPHQAATQVIAELEPFDRELFGGIVGWC DSEGNGEWVVTIRCAKLRENQVRLFAGAGIVPASSPLGEWRETGVKLSTMLNVFGLH" gene 626070..627680 /gene="entE" /locus_tag="b0594" /gene_synonym="ECK0587; JW0586" /db_xref="EcoGene:EG10263" /db_xref="GeneID:947426" CDS 626070..627680 /gene="entE" /locus_tag="b0594" /gene_synonym="ECK0587; JW0586" /EC_number="2.7.7.58" /function="enzyme; Biosynthesis of cofactors, carriers: Enterochelin" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009239 - enterobactin biosynthetic process; GO:0019184 - nonribosomal peptide biosynthetic process" /note="2,3-dihydroxybenzoate-AMP ligase" /codon_start=1 /transl_table=11 /product="2,3-dihydroxybenzoate-AMP ligase component of enterobactin synthase multienzyme complex" /protein_id="NP_415126.1" /db_xref="GI:16128577" /db_xref="ASAP:ABE-0002049" /db_xref="UniProtKB/Swiss-Prot:P10378" /db_xref="EcoGene:EG10263" /db_xref="GeneID:947426" /translation="MSIPFTRWPEEFARRYREKGYWQDLPLTDILTRHAASDSIAVID GERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL ALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE HNLQDAINHPAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVT ALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGM AEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFR GYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENL LLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIAEFKLPDRVE CVDSLPLTAVGKVDKKQLRQWLASRASA" gene 627694..628551 /gene="entB" /locus_tag="b0595" /gene_synonym="ECK0588; entG; JW0587" /db_xref="EcoGene:EG10260" /db_xref="GeneID:946178" CDS 627694..628551 /gene="entB" /locus_tag="b0595" /gene_synonym="ECK0588; entG; JW0587" /EC_number="3.3.2.1" /function="enzyme; Biosynthesis of cofactors, carriers: Enterochelin" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009239 - enterobactin biosynthetic process; GO:0019184 - nonribosomal peptide biosynthetic process" /note="2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase" /codon_start=1 /transl_table=11 /product="isochorismatase" /protein_id="NP_415127.1" /db_xref="GI:16128578" /db_xref="ASAP:ABE-0002052" /db_xref="UniProtKB/Swiss-Prot:P0ADI4" /db_xref="EcoGene:EG10260" /db_xref="GeneID:946178" /translation="MAIPKLQAYALPESHDIPQNKVDWAFEPQRAALLIHDMQDYFVS FWGENCPMMEQVIANIAALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGLTRS PEQQKVVDRLTPDADDTVLVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTT ATDAFMRDIKPFMVADALADFSRDEHLMSLKYVAGRSGRVVMTEELLPAPIPASKAAL REVILPLLDESDEPFDDDNLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAW WKLLSREVK" gene 628551..629297 /gene="entA" /locus_tag="b0596" /gene_synonym="ECK0589; JW0588" /db_xref="EcoGene:EG10259" /db_xref="GeneID:945284" CDS 628551..629297 /gene="entA" /locus_tag="b0596" /gene_synonym="ECK0589; JW0588" /EC_number="1.3.1.28" /function="enzyme; Biosynthesis of cofactors, carriers: Enterochelin" /experiment="N-terminus verified by Edman degradation: PMID 2521622" /GO_process="GO:0009239 - enterobactin biosynthetic process" /note="2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, enterochelin biosynthesis" /codon_start=1 /transl_table=11 /product="2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase" /protein_id="NP_415128.1" /db_xref="GI:16128579" /db_xref="ASAP:ABE-0002054" /db_xref="UniProtKB/Swiss-Prot:P15047" /db_xref="EcoGene:EG10259" /db_xref="GeneID:945284" /translation="MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQY PFATEVMDVADAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAV NVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGL ELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEI ANTILFLASDLASHITLQDIVVDGGSTLGA" gene 629300..629713 /gene="entH" /locus_tag="b0597" /gene_synonym="ECK0590; JW0589; ybdB" /db_xref="EcoGene:EG11105" /db_xref="GeneID:945215" CDS 629300..629713 /gene="entH" /locus_tag="b0597" /gene_synonym="ECK0590; JW0589; ybdB" /codon_start=1 /transl_table=11 /product="enterobactin synthesis proofreading thioesterase" /protein_id="NP_415129.1" /db_xref="GI:16128580" /db_xref="ASAP:ABE-0002057" /db_xref="UniProtKB/Swiss-Prot:P0A8Y8" /db_xref="EcoGene:EG11105" /db_xref="GeneID:945215" /translation="MIWKRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDT RTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCVVGTELNATHHRPVSEGKVRGVC QPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVLG" gene 629894..631999 /gene="cstA" /locus_tag="b0598" /gene_synonym="dppG?; ECK0591; JW0590; ybdC" /db_xref="EcoGene:EG10167" /db_xref="GeneID:945213" CDS 629894..631999 /gene="cstA" /locus_tag="b0598" /gene_synonym="dppG?; ECK0591; JW0590; ybdC" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042594 - response to starvation" /codon_start=1 /transl_table=11 /product="carbon starvation protein involved in peptide utilization; APC peptide transporter family protein" /protein_id="NP_415130.1" /db_xref="GI:16128581" /db_xref="ASAP:ABE-0002061" /db_xref="UniProtKB/Swiss-Prot:P15078" /db_xref="EcoGene:EG10167" /db_xref="GeneID:945213" /translation="MNKSGKYLVWTVLSVMGAFALGYIALNRGEQINALWIVVASVCI YLIAYRFYGLYIAKNVLAVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPL VGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAG VIALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLALFMGIYLRYLRPGRI GEVSVIGLVFLIFAIISGGWVAESPTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLL APRDYLSTFLKIGTIVGLAVGILIMRPTLTMPALTKFVDGTGPVWTGNLFPFLFITIA CGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVSACIIDPGVYFA MNSPMAVLAPAGTADVVASAAQVVSSWGFSITPDTLNQIASEVGEQSIISRAGGAPTL AVGMAYILHGALGGMMDVAFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVVSPG LKRTDSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLC AVVLFKMKRQRYAWVALVPTAWLLICTLTAGWQKAFSPDAKVGFLAIANKFQAMIDSG NIPSQYTESQLAQLVFNNRLDAGLTIFFMVVVVVLALFSIKTALAALKDPKPTAKETP YEPMPENVEEIVAQAKGAH" repeat_region 632115..632148 /note="REP55 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 632182..632379 /gene="ybdD" /locus_tag="b4512" /gene_synonym="ECK0592; JW0591" /db_xref="EcoGene:EG11107" /db_xref="GeneID:949021" CDS 632182..632379 /gene="ybdD" /locus_tag="b4512" /gene_synonym="ECK0592; JW0591" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="DUF466 family protein" /protein_id="YP_588442.1" /db_xref="GI:94541100" /db_xref="ASAP:ABE-0285033" /db_xref="UniProtKB/Swiss-Prot:P0AAS9" /db_xref="EcoGene:EG11107" /db_xref="GeneID:949021" /translation="MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTY EEFFRERQDARYGGKGGARCC" gene complement(632389..633477) /gene="ybdH" /locus_tag="b0599" /gene_synonym="ECK0593; JW0592" /db_xref="EcoGene:EG12692" /db_xref="GeneID:945212" CDS complement(632389..633477) /gene="ybdH" /locus_tag="b0599" /gene_synonym="ECK0593; JW0592" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_415132.1" /db_xref="GI:16128582" /db_xref="ASAP:ABE-0002065" /db_xref="UniProtKB/Swiss-Prot:P45579" /db_xref="EcoGene:EG12692" /db_xref="GeneID:945212" /translation="MPHNPIRVVVGPANYFSHPGSFNHLHDFFTDEQLSRAVWIYGKR AIAAAQTKLPPAFGLPGAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTA KALARRLGLPFVAVPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIIL NAPQQYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINNAQAIRDVLLNSSEQALS DQQNQQLTQSFCDVVDAIIAGGGMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGT KVAYGILVQSALLGQDDVLAQLTGAYQRFHLPTTLAELEVDINNQAEIDKVIAHTLRP VESIHYLPVTLTPDTLRAAFKKVESFKA" gene 633586..634746 /gene="ybdL" /locus_tag="b0600" /gene_synonym="ECK0594; JW0593" /db_xref="EcoGene:EG13531" /db_xref="GeneID:945211" CDS 633586..634746 /gene="ybdL" /locus_tag="b0600" /gene_synonym="ECK0594; JW0593" /EC_number="2.6.1.-" /function="putative enzyme; Not classified" /GO_process="GO:0008152 - metabolic process" /note="PLP-dependent methionine aminotransferase" /codon_start=1 /transl_table=11 /product="methionine aminotransferase, PLP-dependent" /protein_id="NP_415133.1" /db_xref="GI:16128583" /db_xref="ASAP:ABE-0002069" /db_xref="UniProtKB/Swiss-Prot:P77806" /db_xref="EcoGene:EG13531" /db_xref="GeneID:945211" /translation="MTNNPLIPQSKLPQLGTTIFTQMSALAQQHQAINLSQGFPDFDG PRYLQERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATE ALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALL SERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASV LAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLA LADMLRAEPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVSTLDD VEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL" gene complement(634747..635376) /gene="ybdM" /locus_tag="b0601" /gene_synonym="ECK0595; JW0594" /db_xref="EcoGene:EG13532" /db_xref="GeneID:945206" CDS complement(634747..635376) /gene="ybdM" /locus_tag="b0601" /gene_synonym="ECK0595; JW0594" /codon_start=1 /transl_table=11 /product="Spo0J family protein, ParB-like nuclease domain" /protein_id="NP_415134.1" /db_xref="GI:16128584" /db_xref="ASAP:ABE-0002071" /db_xref="UniProtKB/Swiss-Prot:P77174" /db_xref="EcoGene:EG13532" /db_xref="GeneID:945206" /translation="MGDTMQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFRE EPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLQKSIEIDGFTQPIVVTHTDKNAMEIV DGFHRHEIGKGSSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMSEIV RELSQLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQYSRAWTVK" gene complement(635349..636569) /gene="ybdN" /locus_tag="b0602" /gene_synonym="ECK0596; JW0595" /db_xref="EcoGene:EG13533" /db_xref="GeneID:945205" CDS complement(635349..636569) /gene="ybdN" /locus_tag="b0602" /gene_synonym="ECK0596; JW0595" /codon_start=1 /transl_table=11 /product="PAPS reductase-like domain protein" /protein_id="NP_415135.1" /db_xref="GI:16128585" /db_xref="ASAP:ABE-0002073" /db_xref="UniProtKB/Swiss-Prot:P77216" /db_xref="EcoGene:EG13533" /db_xref="GeneID:945205" /translation="MSIYKIPLPLNILEAARERITWTLNTLPRVCVSFSGGKDSGLML HLTAELARQMGKKICVLFIDWEAQFSCTINYVQSLRELYTDVIEEFYWVALPLTTQNS LSQYQPEWQCWEPDVEWVRQPPQDAITDPDFFCFYQPGMTFEQFVREFAEWFSQKRPA AMMIGIRADESYNRFVAIASLNKQRFADDKPWTTAAPGGHSWYIYPIYDWKVADIWTW YANHQSLCNPLYNLMYQAGVPLRHMRICEPFGPEQRQGLWLYHVIEPDRWAAMCARVS GVKSGGIYAGHDNHFYGHRKILKPEHLDWQEYALLLLNSMPEKTAEHYRNKIAIYLHW YQKKGIEVPQTQQGDIGAKDIPSWRRICKVLLNNDYWCRALSFSPTKSKNYQRYNERI KGKRQEWGILCNND" gene complement(636716..637618) /gene="ybdO" /locus_tag="b0603" /gene_synonym="ECK0597; JW0596" /db_xref="EcoGene:EG13534" /db_xref="GeneID:945216" CDS complement(636716..637618) /gene="ybdO" /locus_tag="b0603" /gene_synonym="ECK0597; JW0596" /function="putative regulator; Not classified" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent; GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator" /protein_id="NP_415136.1" /db_xref="GI:16128586" /db_xref="ASAP:ABE-0002077" /db_xref="UniProtKB/Swiss-Prot:P77746" /db_xref="EcoGene:EG13534" /db_xref="GeneID:945216" /translation="MANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQS LQRLRAQFNDPLFIRSGKGIAPTTTGLNLHHHLEKNLRGLEQTINIVNKSELKKNFII YGPQLISCSNNSMLIRCLRQDSSVEIECHDILMSAENAEELLVHRKADLVITQMPVIS RSVICMPLHTIRNTLICSNRHPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDER FMNRKISFRGSSLLTIINSIAVTDLLGIVPYELYNSYRDFLNLKEIKLEHPLPSIKLY ISYNKSSLNNLVFSRFIDRLNESF" gene complement(637827..638573) /gene="dsbG" /locus_tag="b0604" /gene_synonym="ECK0598; JW0597; ybdP" /db_xref="EcoGene:EG13535" /db_xref="GeneID:945224" CDS complement(637827..638573) /gene="dsbG" /locus_tag="b0604" /gene_synonym="ECK0598; JW0597; ybdP" /EC_number="5.3.4.1" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006457 - protein folding" /note="thiol:disulfide interchange protein" /codon_start=1 /transl_table=11 /product="thiol:disulfide interchange protein, periplasmic" /protein_id="NP_415137.2" /db_xref="GI:90111151" /db_xref="ASAP:ABE-0002084" /db_xref="UniProtKB/Swiss-Prot:P77202" /db_xref="EcoGene:EG13535" /db_xref="GeneID:945224" /translation="MLKKILLLALLPAIAFAEELPAPVKAIEKQGITIIKTFDAPGGM KGYLGKYQDMGVTIYLTPDGKHAISGYMYNEKGENLSNTLIEKEIYAPAGREMWQRME QSHWLLDGKKDAPVIVYVFADPFCPYCKQFWQQARPWVDSGKVQLRTLLVGVIKPESP ATAAAILASKDPAKTWQQYEASGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTP AIYYMSKENTLQQAVGLPDQKTLNIIMGNK" gene 638945..639508 /gene="ahpC" /locus_tag="b0605" /gene_synonym="ECK0599; JW0598; tpx" /db_xref="EcoGene:EG11384" /db_xref="GeneID:945225" CDS 638945..639508 /gene="ahpC" /locus_tag="b0605" /gene_synonym="ECK0599; JW0598; tpx" /EC_number="1.11.1.15" /function="enzyme; Detoxification" /GO_process="GO:0006805 - xenobiotic metabolic process" /note="alkyl hydroperoxide reductase, C22 subunit; detoxification of hydroperoxides" /codon_start=1 /transl_table=11 /product="alkyl hydroperoxide reductase, C22 subunit" /protein_id="NP_415138.1" /db_xref="GI:16128588" /db_xref="ASAP:ABE-0002090" /db_xref="UniProtKB/Swiss-Prot:P0AE08" /db_xref="EcoGene:EG11384" /db_xref="GeneID:945225" /translation="MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFT FVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTG ALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAS HPGEVCPAKWKEGEATLAPSLDLVGKI" gene 639753..641318 /gene="ahpF" /locus_tag="b0606" /gene_synonym="ECK0600; JW0599" /db_xref="EcoGene:EG11385" /db_xref="GeneID:947540" CDS 639753..641318 /gene="ahpF" /locus_tag="b0606" /gene_synonym="ECK0600; JW0599" /EC_number="1.11.1.15" /function="enzyme; Detoxification" /GO_process="GO:0006805 - xenobiotic metabolic process" /note="alkyl hydroperoxide reductase, F52a subunit; detoxification of hydroperoxides" /codon_start=1 /transl_table=11 /product="alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding" /protein_id="NP_415139.2" /db_xref="GI:90111152" /db_xref="ASAP:ABE-0002093" /db_xref="UniProtKB/Swiss-Prot:P35340" /db_xref="EcoGene:EG11385" /db_xref="GeneID:947540" /translation="MLDTNMKTQLKAYLEKLTKPVELIATLDDSAKSAEIKELLAEIA ELSDKVTFKEDNSLPVRKPSFLITNPGSNQGPRFAGSPLGHEFTSLVLALLWTGGHPS KEAQSLLEQIRHIDGDFEFETYYSLSCHNCPDVVQALNLMSVLNPRIKHTAIDGGTFQ NEITDRNVMGVPAVFVNGKEFGQGRMTLTEIVAKIDTGAEKRAAEELNKRDAYDVLIV GSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVH VDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGE DQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA DQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG LLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKAS LSAFDYLIRTKTA" gene complement(641439..641867) /gene="uspG" /locus_tag="b0607" /gene_synonym="ECK0601; JW0600; UP12; ybdQ; yzzU" /db_xref="EcoGene:EG12683" /db_xref="GeneID:945229" CDS complement(641439..641867) /gene="uspG" /locus_tag="b0607" /gene_synonym="ECK0601; JW0600; UP12; ybdQ; yzzU" /experiment="N-terminus verified by Edman degradation: PMID 8740179,9298646,9600841" /codon_start=1 /transl_table=11 /product="universal stress protein UP12" /protein_id="NP_415140.1" /db_xref="GI:16128590" /db_xref="ASAP:ABE-0002095" /db_xref="UniProtKB/Swiss-Prot:P39177" /db_xref="EcoGene:EG12683" /db_xref="GeneID:945229" /translation="MYKTIIMPVDVFEMELSDKAVRHAEFLAQDDGVIHLLHVLPGSA SLSLHRFAADVRRFEEHLQHEAQERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAE ELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVVR" gene 642088..643326 /gene="ybdR" /locus_tag="b0608" /gene_synonym="ECK0602; JW0601" /db_xref="EcoGene:EG13537" /db_xref="GeneID:949067" CDS 642088..643326 /gene="ybdR" /locus_tag="b0608" /gene_synonym="ECK0602; JW0601" /function="putative enzyme; Not classified" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="putative Zn-dependent NAD(P)-binding oxidoreductase" /protein_id="NP_415141.1" /db_xref="GI:16128591" /db_xref="ASAP:ABE-0002099" /db_xref="UniProtKB/Swiss-Prot:P77316" /db_xref="EcoGene:EG13537" /db_xref="GeneID:949067" /translation="MKALTYHGPHHVQVENVPDPGVEQADDIILRITATAICGSDLHL YRGKIPQVKHGDIFGHEFMGEVVETGKDVKNLQKGDRVVIPFVIACGDCFFCRLQQYA ACENTNAGKGAALNKKQIPAPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPLL SDDKALFLSDILPTAWQAAKNAQIQQGSSVAVYGAGPVGLLTIACARLLGAEQIFVVD HHPYRLHFAADRYGAIPINFDEDSDPAQSIIEQTAGHRGVDAVIDAVGFEAKGSTTET VLTNLKLEGSSGKALRQCIAAVRRGGIVSVPGVYAGFIHGFLFGDAFDKGLSFKMGQT HVHAWLGELLPLIEKGLLKPEEIVTHYMPFEEAARGYEIFEKREEECRKVILVPGAQS AEAAQKAVSGLVNAMPGGTI" gene complement(643557..643967) /gene="rnk" /locus_tag="b0610" /gene_synonym="ECK0603; JW0602" /db_xref="EcoGene:EG12637" /db_xref="GeneID:947546" CDS complement(643557..643967) /gene="rnk" /locus_tag="b0610" /gene_synonym="ECK0603; JW0602" /function="regulator; Central intermediary metabolism: Nucleotide interconversions" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="regulator of nucleoside diphosphate kinase" /protein_id="NP_415143.1" /db_xref="GI:16128593" /db_xref="ASAP:ABE-0002104" /db_xref="UniProtKB/Swiss-Prot:P0AFW4" /db_xref="EcoGene:EG12637" /db_xref="GeneID:947546" /translation="MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMC SPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLR VGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL" gene complement(644197..645003) /gene="rna" /locus_tag="b0611" /gene_synonym="ECK0604; JW0603; rnsA" /db_xref="EcoGene:EG10856" /db_xref="GeneID:949065" CDS complement(644197..645003) /gene="rna" /locus_tag="b0611" /gene_synonym="ECK0604; JW0603; rnsA" /EC_number="3.1.27.6" /function="enzyme; Degradation of RNA" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006401 - RNA catabolic process" /note="RNase I, cleaves phosphodiester bond between any two nucleotides" /codon_start=1 /transl_table=11 /product="ribonuclease I" /protein_id="NP_415144.1" /db_xref="GI:16128594" /db_xref="ASAP:ABE-0002107" /db_xref="UniProtKB/Swiss-Prot:P21338" /db_xref="EcoGene:EG10856" /db_xref="GeneID:949065" /translation="MKAFWRNAALLAVSLLPFSSANALALQAKQYGDFDRYVLALSWQ TGFCQSQHDRNRNERDECRLQTETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFG CATRPIPNLPEARASRMCSSPETGLSLETAAKLSEVMPGAGGRSCLERYEYAKHGACF GFDPDAYFGTMVRLNQEIKESEAGKFLADNYGKTVSRRDFDAAFAKSWGKENVKAVKL TCQGNPAYLTEIQISIKADAINAPLSANSFLPQPHPGNCGKTFVIDKAGY" gene complement(645117..646580) /gene="citT" /locus_tag="b0612" /gene_synonym="ECK0605; JW0604; ybdS" /db_xref="EcoGene:EG13538" /db_xref="GeneID:949070" CDS complement(645117..646580) /gene="citT" /locus_tag="b0612" /gene_synonym="ECK0605; JW0604; ybdS" /function="putative membrane; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="citrate/succinate antiporter; citrate carrier" /protein_id="NP_415145.1" /db_xref="GI:16128595" /db_xref="ASAP:ABE-0002110" /db_xref="UniProtKB/Swiss-Prot:P0AE74" /db_xref="EcoGene:EG13538" /db_xref="GeneID:949070" /translation="MSLAKDNIWKLLAPLVVMGVMFLIPVPDGMPPQAWHYFAVFVAM IVGMILEPIPATAISFIAVTICVIGSNYLLFDAKELADPAFNAQKQALKWGLAGFSST TVWLVFGAFIFALGYEVSGLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNT ARTGGTVFPVIKNLPPLFKSFPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVL GLEFVSKIAGIQISWLQWFLCFLPVGVILLIIAPWLSYVLYKPEITHSEEVATWAGDE LKTMGALTRREWTLIGLVLLSLGLWVFGSEVINATAVGLLAVSLMLALHVVPWKDITR YNSAWNTLVNLATLVVMANGLTRSGFIDWFAGTMSTHLEGFSPNATVIVLVLVFYFAH YLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYATGPGVIIY GCGYVKSKDYWRLGAIFGVIYISMLLLVGWPILAMWN" gene complement(646631..647509) /gene="citG" /locus_tag="b0613" /gene_synonym="ECK0606; JW0605; ybdT" /db_xref="EcoGene:EG13539" /db_xref="GeneID:946395" CDS complement(646631..647509) /gene="citG" /locus_tag="b0613" /gene_synonym="ECK0606; JW0605; ybdT" /EC_number="2.4.2.52" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase" /protein_id="NP_415146.1" /db_xref="GI:16128596" /db_xref="ASAP:ABE-0002114" /db_xref="UniProtKB/Swiss-Prot:P77231" /db_xref="EcoGene:EG13539" /db_xref="GeneID:946395" /translation="MSMPATSTKTTKLATSLIDEYALLGWRAMLTEVNLSPKPGLVDR INCGAHKDMALEDFHRSALAIQGWLPRFIEFGACSAEMAPEAVLHGLRPIGMACEGDM FRATAGVNTHKGSIFSLGLLCAAIGRLLQLNQPVTPTTVCSTAASFCRGLTDRELRTN NSQLTAGQRLYQQLGLTGARGEAEAGYPLVINHALPHYLTLLDQGLDPELALLDTLLL LMAINGDTNVASRGGEGGLRWLQREAQTLLQKGGIRTPADLDYLRQFDRECIERNLSP GGSADLLILTWFLAQI" gene complement(647484..648035) /gene="citX" /locus_tag="b0614" /gene_synonym="ECK0607; JW0606; ybdU" /db_xref="EcoGene:EG13540" /db_xref="GeneID:949084" CDS complement(647484..648035) /gene="citX" /locus_tag="b0614" /gene_synonym="ECK0607; JW0606; ybdU" /EC_number="2.7.7.61" /GO_process="GO:0006464 - protein modification process" /codon_start=1 /transl_table=11 /product="apo-citrate lyase phosphoribosyl-dephospho-CoA transferase" /protein_id="NP_415147.1" /db_xref="GI:16128597" /db_xref="ASAP:ABE-0002116" /db_xref="UniProtKB/Swiss-Prot:P0A6G5" /db_xref="EcoGene:EG13540" /db_xref="GeneID:949084" /translation="MHLLPELASHHAVSIPELLVSRDERQARQHVWLKRHPVPLVSFT VVAPGPIKDSEVTRRIFNHGVTALRALAAKQGWQIQEQAALVSASGPEGMLSIAAPAR DLKLATIELEHSHPLGRLWDIDVLTPEGEILSRRDYSLPPRRCLLCEQSAAVCARGKT HQLTDLLNRMEALLNDVDACNVN" gene complement(648039..649571) /gene="citF" /locus_tag="b0615" /gene_synonym="ECK0608; JW5087; ybdV" /db_xref="EcoGene:EG13541" /db_xref="GeneID:945230" CDS complement(648039..649571) /gene="citF" /locus_tag="b0615" /gene_synonym="ECK0608; JW5087; ybdV" /EC_number="2.8.3.10" /EC_number="4.1.3.6" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_component="GO:0005737 - cytoplasm" /note="citrate lyase alpha chain" /codon_start=1 /transl_table=11 /product="citrate lyase, citrate-ACP transferase (alpha) subunit" /protein_id="NP_415148.1" /db_xref="GI:16128598" /db_xref="ASAP:ABE-0002119" /db_xref="UniProtKB/Swiss-Prot:P75726" /db_xref="EcoGene:EG13541" /db_xref="GeneID:945230" /translation="MTQKIEQSQRQERVAAWNRRAECDLAAFQNSPKQTYQAEKARDR KLCANLEEAIRRSGLQDGMTVSFHHAFRGGDLTVNMVMDVIAKMGFKNLTLASSSLSD CHAPLVEHIRQGVVTRIYTSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSGELNI DVAFLGVPSCDEFGNANGYTGKACCGSLGYAIVDADNAKQVVMLTEELLPYPHNPASI EQDQVDLIVKVDRVGDAAKIGAGATRMTTNPRELLIARSAADVIVNSGYFKEGFSMQT GTGGASLAVTRFLEDKMRSRDIRADFALGGITATMVDLHEKGLIRKLLDVQSFDSHAA QSLARNPNHIEISANQYANWGSKGASVDRLDVVVLSALEIDTQFNVNVLTGSDGVLRG ASGGHCDTAIASALSIIVAPLVRGRIPTLVDNVLTCITPGSSVDILVTDHGIAVNPAR PELAERLQEAGIKVVSIEWLRERARLLTGEPQPIEFTDRVVAVVRYRDGSVIDVVHQV KE" gene complement(649582..650490) /gene="citE" /locus_tag="b0616" /gene_synonym="ECK0609; JW0608; ybdW" /db_xref="EcoGene:EG13542" /db_xref="GeneID:945406" CDS complement(649582..650490) /gene="citE" /locus_tag="b0616" /gene_synonym="ECK0609; JW0608; ybdW" /EC_number="4.1.3.34" /EC_number="4.1.3.6" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="citrate lyase, citryl-ACP lyase (beta) subunit" /protein_id="NP_415149.4" /db_xref="GI:90111153" /db_xref="ASAP:ABE-0002122" /db_xref="UniProtKB/Swiss-Prot:P0A9I1" /db_xref="EcoGene:EG13542" /db_xref="GeneID:945406" /translation="MISASLQQRKTRTRRSMLFVPGANAAMVSNSFIYPADALMFDLE DSVALREKDTARRMVYHALQHPLYRDIETIVRVNALDSEWGVNDLEAVVRGGADVVRL PKTDTAQDVLDIEKEILRIEKACGREPGSTGLLAAIESPLGITRAVEIAHASERLIGI ALGAEDYVRNLRTERSPEGTELLFARCSILQAARSAGIQAFDTVYSDANNEAGFLQEA AHIKQLGFDGKSLINPRQIDLLHNLYAPTQKEVDHARRVVEAAEAAAREGLGVVSLNG KMVDGPVIDRARLVLSRAELSGIREE" gene complement(650487..650783) /gene="citD" /locus_tag="b0617" /gene_synonym="ECK0610; JW0609; ybdX" /db_xref="EcoGene:EG13543" /db_xref="GeneID:945415" CDS complement(650487..650783) /gene="citD" /locus_tag="b0617" /gene_synonym="ECK0610; JW0609; ybdX" /EC_number="4.1.3.6" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0042967 - acyl-carrier-protein biosynthetic process" /note="citrate lyase acyl carrier protein (gamma chain)" /codon_start=1 /transl_table=11 /product="citrate lyase, acyl carrier (gamma) subunit" /protein_id="NP_415150.1" /db_xref="GI:16128600" /db_xref="ASAP:ABE-0002124" /db_xref="UniProtKB/Swiss-Prot:P69330" /db_xref="EcoGene:EG13543" /db_xref="GeneID:945415" /translation="MKINQPAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGDA IRTTILDVLARYNVRGVQLNVDDKGALDCILRARLEALLARASGIPALPWEDCQ" gene complement(650798..651856) /gene="citC" /locus_tag="b0618" /gene_synonym="ECK0611; JW0610; ybeO" /db_xref="EcoGene:EG13645" /db_xref="GeneID:945231" CDS complement(650798..651856) /gene="citC" /locus_tag="b0618" /gene_synonym="ECK0611; JW0610; ybeO" /EC_number="6.2.1.22" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006464 - protein modification process" /note="citrate lyase synthetase (citrate (pro-3S)-lyase ligase" /codon_start=1 /transl_table=11 /product="citrate lyase ligase; [citrate [pro-3S]-lyase] ligase" /protein_id="NP_415151.4" /db_xref="GI:90111154" /db_xref="ASAP:ABE-0002126" /db_xref="UniProtKB/Swiss-Prot:P77390" /db_xref="EcoGene:EG13645" /db_xref="GeneID:945231" /translation="MFGNDIFTRVKRSENKKMAEIAQFLHENDLSVDTTVEVFITVTR DEKLIACGGIAGNIIKCVAISESVRGEGLALTLATELINLAYERHSTHLFIYTKTEYE ALFRQCGFSTLTSVPGVMVLMENSATRLKRYAESLKKFRHPGNKIGCIVMNANPFTNG HRYLIQQAAAQCDWLHLFLVKEDSSRFPYEDRLDLVLKGTADIPRLTVHRGSEYIISR ATFPCYFIKEQSVINHCYTEIDLKIFRQYLAPALGVTHRFVGTEPFCRVTAQYNQDMR YWLETPTISAPPIELVEIERLRYQEMPISASRVRQLLAKNDLTAIAPLVPAVTLHYLQ NLLEHSRQDAAARQKTPA" gene 652235..653893 /gene="citA" /locus_tag="b0619" /gene_synonym="criS; dpiB; ECK0612; JW0611; mpdB; ybeP" /db_xref="EcoGene:EG13646" /db_xref="GeneID:945233" CDS 652235..653893 /gene="citA" /locus_tag="b0619" /gene_synonym="criS; dpiB; ECK0612; JW0611; mpdB; ybeP" /function="regulator; Degradation of small molecules: Carbon compounds" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006464 - protein modification process" /note="putative sensor-type protein" /codon_start=1 /transl_table=11 /product="sensory histidine kinase in two-component regulatory system with CitB" /protein_id="NP_415152.1" /db_xref="GI:16128602" /db_xref="ASAP:ABE-0002129" /db_xref="UniProtKB/Swiss-Prot:P77510" /db_xref="EcoGene:EG13646" /db_xref="GeneID:945233" /translation="MLQLNENKQFAFFQRLAFPLRIFLLILVFSIFVIAALAQYFTAS FEDYLTLHVRDMAMNQAKIIASNDSVISAVKTRDYKRLATIANKLQRDTDFDYVVIGD RHSIRLYHPNPEKIGYPMQFTKQGALEKGESYFITGKGSMGMAMRAKTPIFDDDGKVI GVVSIGYLVSKIDSWRAEFLLPMAGVFVVLLGILMLLSWFLAAHIRRQMMGMEPKQIA RVVRQQEALFSSVYEGLIAVDPHGYITAINRNARKMLGLSSPGRQWLGKPIVEVVRPA DFFTEQIDEKRQDVVANFNGLSVIANREAIRSGDDLLGAIISFRSKDEISTLNAQLTQ IKQYVESLRTLRHEHLNWMSTLNGLLQMKEYDRVLAMVQGESQAQQQLIDSLREAFAD RQVAGLLFGKVQRARELGLKMIIVPGSQLSQLPPGLDSTEFAAIVGNLLDNAFEASLR SDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQGVSTRADEPGEHGIGLY LIASYVTRCGGVITLEDNDPCGTLFSIYIPKVKPNDSSINPIDR" gene 653862..654542 /gene="citB" /locus_tag="b0620" /gene_synonym="criR; dpiA; ECK0613; JW0612; mpdA" /db_xref="EcoGene:EG13544" /db_xref="GeneID:947008" CDS 653862..654542 /gene="citB" /locus_tag="b0620" /gene_synonym="criR; dpiA; ECK0613; JW0612; mpdA" /function="regulator; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="sequence similarity to Shigella regulator" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with CitA" /protein_id="NP_415153.1" /db_xref="GI:16128603" /db_xref="ASAP:ABE-0002131" /db_xref="UniProtKB/Swiss-Prot:P0AEF4" /db_xref="EcoGene:EG13544" /db_xref="GeneID:947008" /translation="MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARM MIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVF DYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGID PLTLNAVRKLFKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGR PQRIYHSG" repeat_region 654552..654574 /note="REP56 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(654583..655968) /gene="dcuC" /locus_tag="b0621" /gene_synonym="ECK0614; JW0613; JW0616" /db_xref="EcoGene:EG13545" /db_xref="GeneID:945000" CDS complement(654583..655968) /gene="dcuC" /locus_tag="b0621" /gene_synonym="ECK0614; JW0613; JW0616" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="transport of dicarboxylates" /codon_start=1 /transl_table=11 /product="anaerobic C4-dicarboxylate transport" /protein_id="NP_415154.1" /db_xref="GI:16128604" /db_xref="ASAP:ABE-0002133" /db_xref="UniProtKB/Swiss-Prot:P0ABP3" /db_xref="EcoGene:EG13545" /db_xref="GeneID:945000" /translation="MLTFIELLIGVVVIVGVARYIIKGYSATGVLFVGGLLLLIISAI MGHKVLPSSQASTGYSATDIVEYVKILLMSRGGDLGMMIMMLCGFAAYMTHIGANDMV VKLASKPLQYINSPYLLMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGISRG AAAAICASPAAIILAPTSGDVVLAAQASEMSLIDFAFKTTLPISIAAIIGMAIAHFFW QRYLDKKEHISHEMLDVSEITTTAPAFYAILPFTPIIGVLIFDGKWGPQLHIITILVI CMLIASILEFLRSFNTQKVFSGLEVAYRGMADAFANVVMLLVAAGVFAQGLSTIGFIQ SLISIATSFGSASIILMLVLVILTMLAAVTTGSGNAPFYAFVEMIPKLAHSSGINPAY LTIPMLQASNLGRTLSPVSGVVVAVAGMAKISPFEVVKRTSVPVLVGLVIVIVATELM VPGTAAAVTGK" gene 656557..657117 /gene="pagP" /locus_tag="b0622" /gene_synonym="crcA; ECK0615; JW0617; ybeG" /db_xref="EcoGene:EG12180" /db_xref="GeneID:946360" CDS 656557..657117 /gene="pagP" /locus_tag="b0622" /gene_synonym="crcA; ECK0615; JW0617; ybeG" /EC_number="2.3.1.-" /function="enzyme; Surface polysaccharides & antigens" /codon_start=1 /transl_table=11 /product="phospholipid:lipid A palmitoyltransferase" /protein_id="NP_415155.1" /db_xref="GI:16128605" /db_xref="ASAP:ABE-0002139" /db_xref="UniProtKB/Swiss-Prot:P37001" /db_xref="EcoGene:EG12180" /db_xref="GeneID:946360" /translation="MNVSKYVAIFSFVFIQLISVGKVFANADEWMTTFRENIAQTWQQ PEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDS WNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGP VTFQMTYIPGTYNNGNVYFAWMRFQF" gene 657292..657501 /gene="cspE" /locus_tag="b0623" /gene_synonym="ECK0616; gicA; JW0618; msmC" /db_xref="EcoGene:EG12179" /db_xref="GeneID:947024" CDS 657292..657501 /gene="cspE" /locus_tag="b0623" /gene_synonym="ECK0616; gicA; JW0618; msmC" /function="phenotype; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0009266 - response to temperature stimulus; GO:0006350 - transcription" /note="cold shock protein" /codon_start=1 /transl_table=11 /product="constitutive cold shock family transcription antitermination protein; negative regulator of cspA transcription; RNA melting protein; ssDNA-binding protein" /protein_id="NP_415156.1" /db_xref="GI:16128606" /db_xref="ASAP:ABE-0002142" /db_xref="UniProtKB/Swiss-Prot:P0A972" /db_xref="EcoGene:EG12179" /db_xref="GeneID:947024" /translation="MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTL AEGQRVEFEITNGAKGPSAANVIAL" gene complement(657555..657938) /gene="flc" /locus_tag="b0624" /gene_synonym="crcB; ECK0617; fluC; JW0619; ybeI" /db_xref="EcoGene:EG12209" /db_xref="GeneID:945798" CDS complement(657555..657938) /gene="flc" /locus_tag="b0624" /gene_synonym="crcB; ECK0617; fluC; JW0619; ybeI" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="fluoride efflux channel, dual topology membrane protein" /protein_id="NP_415157.1" /db_xref="GI:16128607" /db_xref="ASAP:ABE-0002144" /db_xref="UniProtKB/Swiss-Prot:P37002" /db_xref="EcoGene:EG12209" /db_xref="GeneID:945798" /translation="MLQLLLAVFIGGGTGSVARWLLSMRFNPLHQAIPLGTLTANLIG AFIIGIGFAWFSRMTNIDPVWKVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLN VFVNLLGSFAMTALAFWLFSASTAH" gene 658031..658818 /gene="ybeM" /locus_tag="b4581" /gene_synonym="ECK0618; JW0620; ybeH" /pseudo /db_xref="EcoGene:EG13162" /db_xref="GeneID:4056041" CDS join(658031..658225,658225..658818) /gene="ybeM" /locus_tag="b4581" /gene_synonym="ECK0618; JW0620; ybeH" /note="pseudogene, C-N hydrolase superfamily homology;putative enzyme; Not classified; putative amidase" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0002148" /db_xref="ASAP:ABE-0002150" /db_xref="ASAP:ABE-0285113" /db_xref="UniProtKB/Swiss-Prot:P39874" /db_xref="EcoGene:EG13162" /db_xref="GeneID:4056041" gene 658947..659150 /gene="tatE" /locus_tag="b0627" /gene_synonym="ECK0620; JW0622; ybeC" /db_xref="EcoGene:EG11305" /db_xref="GeneID:945228" CDS 658947..659150 /gene="tatE" /locus_tag="b0627" /gene_synonym="ECK0620; JW0622; ybeC" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="TatABCE protein translocation system subunit" /protein_id="NP_415160.1" /db_xref="GI:16128610" /db_xref="ASAP:ABE-0002153" /db_xref="UniProtKB/Swiss-Prot:P0A843" /db_xref="EcoGene:EG11305" /db_xref="GeneID:945228" /translation="MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMN DDDAAAKKGADVDLQAEKLSHKE" gene complement(659251..660216) /gene="lipA" /locus_tag="b0628" /gene_synonym="ECK0621; JW0623; lip" /db_xref="EcoGene:EG11306" /db_xref="GeneID:945227" CDS complement(659251..660216) /gene="lipA" /locus_tag="b0628" /gene_synonym="ECK0621; JW0623; lip" /EC_number="2.8.1.-" /function="putative enzyme; Biosynthesis of cofactors, carriers: Lipoate" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009107 - lipoate biosynthetic process" /note="lipoate synthesis, sulfur insertion?" /codon_start=1 /transl_table=11 /product="lipoate synthase" /protein_id="NP_415161.1" /db_xref="GI:16128611" /db_xref="ASAP:ABE-0002155" /db_xref="UniProtKB/Swiss-Prot:P60716" /db_xref="EcoGene:EG11306" /db_xref="GeneID:945227" /translation="MSKPIVMERGVKYRDADKMALIPVKNVATEREALLRKPEWMKIK LPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCD VAHGRPVAPDANEPVKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKS PQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLL ERFKEAHPEIPTKSGLMVGLGETNEEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQ RYVSPDEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK" gene complement(660425..661378) /gene="ybeF" /locus_tag="b0629" /gene_synonym="ECK0622; JW0624" /db_xref="EcoGene:EG11594" /db_xref="GeneID:945219" CDS complement(660425..661378) /gene="ybeF" /locus_tag="b0629" /gene_synonym="ECK0622; JW0624" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="LysR family putative transcriptional regulator" /protein_id="NP_415162.4" /db_xref="GI:90111155" /db_xref="ASAP:ABE-0002158" /db_xref="UniProtKB/Swiss-Prot:P30979" /db_xref="EcoGene:EG11594" /db_xref="GeneID:945219" /translation="MDSNNQIEPCLSRKSSEGKPQIFTTLRNIDLNLLTIFEAVYVHK GIVNAAKVLNLTPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEYISQGLES ILGALDIEGSYDKQRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPISDAENQL SQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICREGNPLLSLEDDRETIDNAAHVLLL PEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPSRFYNLFSRCWP LEKLPFPSLNEEQIDFSIHYNKFSLRDPILHGVIDVIRNAF" gene complement(661637..662278) /gene="lipB" /locus_tag="b0630" /gene_synonym="cde; ECK0623; JW5089" /db_xref="EcoGene:EG11591" /db_xref="GeneID:945217" CDS complement(661637..662278) /gene="lipB" /locus_tag="b0630" /gene_synonym="cde; ECK0623; JW5089" /EC_number="2.3.1.-" /function="enzyme; Biosynthesis of cofactors, carriers: Lipoate" /GO_process="GO:0009107 - lipoate biosynthetic process" /note="protein of lipoate biosynthesis" /codon_start=1 /transl_table=11 /product="octanoyltransferase; octanoyl-[ACP]:protein N-octanoyltransferase" /protein_id="NP_415163.2" /db_xref="GI:90111156" /db_xref="ASAP:ABE-0002160" /db_xref="UniProtKB/Swiss-Prot:P60720" /db_xref="EcoGene:EG11591" /db_xref="GeneID:945217" /translation="MYQDKILVRQLGLQPYEPISQAMHEFTDTRDDSTLDEIWLVEHY PVFTQGQAGKAEHILMPGDIPVIQSDRGGQVTYHGPGQQVMYVLLNLKRRKLGVRELV TLLEQTVVNTLAELGIEAHPRADAPGVYVGEKKICSLGLRIRRGCSFHGLALNVNMDL SPFLRINPCGYAGMEMAKISQWKPEATTNNIAPRLLENILALLNNPDFEYITA" gene complement(662379..662642) /gene="ybeD" /locus_tag="b0631" /gene_synonym="ECK0624; JW0626" /db_xref="EcoGene:EG11592" /db_xref="GeneID:945220" CDS complement(662379..662642) /gene="ybeD" /locus_tag="b0631" /gene_synonym="ECK0624; JW0626" /codon_start=1 /transl_table=11 /product="UPF0250 family protein" /protein_id="NP_415164.1" /db_xref="GI:16128614" /db_xref="ASAP:ABE-0002162" /db_xref="UniProtKB/Swiss-Prot:P0A8J4" /db_xref="EcoGene:EG11592" /db_xref="GeneID:945220" /translation="MKTKLNELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYT PTVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMVL" gene complement(662752..663963) /gene="dacA" /locus_tag="b0632" /gene_synonym="ECK0625; JW0627; pfv" /db_xref="EcoGene:EG10201" /db_xref="GeneID:945222" CDS complement(662752..663963) /gene="dacA" /locus_tag="b0632" /gene_synonym="ECK0625; JW0627; pfv" /EC_number="3.4.16.4" /function="enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0019866 - organelle inner membrane" /GO_process="GO:0042493 - response to drug" /note="D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5)" /protein_id="NP_415165.1" /db_xref="GI:16128615" /db_xref="ASAP:ABE-0002168" /db_xref="UniProtKB/Swiss-Prot:P0AEB2" /db_xref="EcoGene:EG10201" /db_xref="GeneID:945222" /translation="MNTIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQI DAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGN DAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVG LMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFT FNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKG REAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDVYLTIPRGRM KDLKASYVLNSSELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFFGKIID YIKLMFHHWFG" gene complement(664102..665190) /gene="rlpA" /locus_tag="b0633" /gene_synonym="ECK0626; JW0628" /db_xref="EcoGene:EG10854" /db_xref="GeneID:945241" CDS complement(664102..665190) /gene="rlpA" /locus_tag="b0633" /gene_synonym="ECK0626; JW0628" /function="membrane; Macromolecule synthesis, modification: Lipoprotein" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="a minor lipoprotein" /codon_start=1 /transl_table=11 /product="septal ring protein, suppressor of prc, minor lipoprotein" /protein_id="NP_415166.1" /db_xref="GI:16128616" /db_xref="ASAP:ABE-0002171" /db_xref="UniProtKB/Swiss-Prot:P10100" /db_xref="EcoGene:EG10854" /db_xref="GeneID:945241" /translation="MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEIS GADPRFEPLNATANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFD PTQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSN NTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILP VSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPA MVTPQAVSQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGP FASKAEASTLQQRLQTEAQLQSFITTAQ" gene complement(665201..666313) /gene="mrdB" /locus_tag="b0634" /gene_synonym="ECK0627; JW0629; rodA" /db_xref="EcoGene:EG10607" /db_xref="GeneID:945238" CDS complement(665201..666313) /gene="mrdB" /locus_tag="b0634" /gene_synonym="ECK0627; JW0629; rodA" /function="phenotype; Cell division" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="rod shape-determining membrane protein; sensitivity to radiation and drugs" /codon_start=1 /transl_table=11 /product="cell wall shape-determining protein" /protein_id="NP_415167.1" /db_xref="GI:16128617" /db_xref="ASAP:ABE-0002173" /db_xref="UniProtKB/Swiss-Prot:P0ABG7" /db_xref="EcoGene:EG10607" /db_xref="GeneID:945238" /translation="MTDNPNKKTFWDKVHLDPTMLLILLALLVYSALVIWSASGQDIG MMERKIGQIAMGLVIMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRW LDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTGIALVLIFMPTLLVAAQPDL GTSILVALSGLFVLFLSGLSWRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPE SDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVG ILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGV PLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV" gene complement(666316..668217) /gene="mrdA" /locus_tag="b0635" /gene_synonym="ECK0628; JW0630; pbpA" /db_xref="EcoGene:EG10606" /db_xref="GeneID:945240" CDS complement(666316..668217) /gene="mrdA" /locus_tag="b0635" /gene_synonym="ECK0628; JW0630; pbpA" /function="enzyme; Cell division" /experiment="N-terminus verified by Edman degradation: PMID 3533535" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process; GO:0042493 - response to drug" /note="cell elongation, e phase; peptidoglycan synthetase; penicillin-binding protein 2" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 2, transpeptidase involved in peptidoglycan synthesis" /protein_id="NP_415168.1" /db_xref="GI:16128618" /db_xref="ASAP:ABE-0002178" /db_xref="UniProtKB/Swiss-Prot:P0AD65" /db_xref="EcoGene:EG10606" /db_xref="GeneID:945240" /translation="MKLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQI VRFTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTL DALRSVVDLTDDDIAAFRKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG YKRRYYPYGSALTHVIGYVSKINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVL HGQTGYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVT DPRTGGVLALVSTPSYDPNLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKP YVAVSALSAGVITRNTTLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTRSLEESADTFF YQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIP VGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIH SGYWELAKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAE RLRDHKLMTAFAPYNNPQVAVAMILENGGAGPAVGTLMRQILDHIMLGDNNTDLPAEN PAVAAAEDH" gene complement(668248..668715) /gene="rlmH" /locus_tag="b0636" /gene_synonym="ECK0629; JW0631; ybeA" /db_xref="EcoGene:EG11254" /db_xref="GeneID:945239" CDS complement(668248..668715) /gene="rlmH" /locus_tag="b0636" /gene_synonym="ECK0629; JW0631; ybeA" /function="enzyme; rRNA modification" /codon_start=1 /transl_table=11 /product="23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent" /protein_id="NP_415169.1" /db_xref="GI:16128619" /db_xref="ASAP:ABE-0002180" /db_xref="UniProtKB/Swiss-Prot:P0A8I8" /db_xref="EcoGene:EG11254" /db_xref="GeneID:945239" /translation="MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRG KNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLI GGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE" gene complement(668719..669036) /gene="rsfS" /locus_tag="b0637" /gene_synonym="ECK0630; JW5090; rsfA; slm3; ybeB" /db_xref="EcoGene:EG11255" /db_xref="GeneID:945237" CDS complement(668719..669036) /gene="rsfS" /locus_tag="b0637" /gene_synonym="ECK0630; JW5090; rsfA; slm3; ybeB" /function="factor; Ribosomes - maturation and modification" /codon_start=1 /transl_table=11 /product="ribosomal silencing factor" /protein_id="NP_415170.4" /db_xref="GI:90111157" /db_xref="ASAP:ABE-0002183" /db_xref="UniProtKB/Swiss-Prot:P0AAT6" /db_xref="EcoGene:EG11255" /db_xref="GeneID:945237" /translation="MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTS SRHVMSIADHVVQESRAAGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEK LWS" gene complement(669296..669907) /gene="cobC" /locus_tag="b0638" /gene_synonym="ECK0631; JW0633; phpB" /db_xref="EcoGene:EG13240" /db_xref="GeneID:945246" CDS complement(669296..669907) /gene="cobC" /locus_tag="b0638" /gene_synonym="ECK0631; JW0633; phpB" /function="putative regulator; Biosynthesis of cofactors, carriers: Cobalamin" /note="homolog of Salmonella cobC, a phosphohistidine protein" /codon_start=1 /transl_table=11 /product="putative alpha-ribazole-5'-P phosphatase" /protein_id="NP_415171.1" /db_xref="GI:16128621" /db_xref="ASAP:ABE-0002185" /db_xref="UniProtKB/Swiss-Prot:P52086" /db_xref="EcoGene:EG13240" /db_xref="GeneID:945246" /translation="MRLWLIRHGETQANIDGLYSGHAPTPLTARGIEQAQNLHTLLHG VSFDLVLCSELERAQHTARLVLSDRQLPVQIIPELNEMFFGDWEMRHHRDLMQEDAEN YSAWCNDWQHAIPTNGEGFQAFSQRVERFIARLSEFQHYQNILVVSHQGVLSLLIARL IGMPAEAMWHFRVDQGCWSAIDINQKFATLRVLNSRAIGVENA" gene complement(669931..670572) /gene="nadD" /locus_tag="b0639" /gene_synonym="ECK0632; fusB; JW0634; ybeN" /db_xref="EcoGene:EG13241" /db_xref="GeneID:945248" CDS complement(669931..670572) /gene="nadD" /locus_tag="b0639" /gene_synonym="ECK0632; fusB; JW0634; ybeN" /EC_number="2.7.7.18" /GO_process="GO:0009435 - NAD biosynthetic process" /codon_start=1 /transl_table=11 /product="nicotinic acid mononucleotide adenylyltransferase, NAD(P)-dependent" /protein_id="NP_415172.1" /db_xref="GI:16128622" /db_xref="ASAP:ABE-0002187" /db_xref="UniProtKB/Swiss-Prot:P0A752" /db_xref="EcoGene:EG13241" /db_xref="GeneID:945248" /translation="MKSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP HRPQPEANSVQRKHMLELAIADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPL AFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNPED LHLQPAGKIYLAETPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLYR" gene complement(670574..671605) /gene="holA" /locus_tag="b0640" /gene_synonym="ECK0633; JW0635" /db_xref="EcoGene:EG11412" /db_xref="GeneID:947573" CDS complement(670574..671605) /gene="holA" /locus_tag="b0640" /gene_synonym="ECK0633; JW0635" /EC_number="2.7.7.7" /function="enzyme; DNA - replication, repair, restriction/modification" /experiment="N-terminus verified by Edman degradation: PMID 1400251,8505303" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication" /codon_start=1 /transl_table=11 /product="DNA polymerase III, delta subunit" /protein_id="NP_415173.1" /db_xref="GI:16128623" /db_xref="ASAP:ABE-0002192" /db_xref="UniProtKB/Swiss-Prot:P28630" /db_xref="EcoGene:EG11412" /db_xref="GeneID:947573" /translation="MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAA QGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTG LLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNL ELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWV DALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKH RVWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHK PLADVFIDG" gene complement(671605..672186) /gene="lptE" /locus_tag="b0641" /gene_synonym="ECK0634; JW0636; rlpB" /db_xref="EcoGene:EG10855" /db_xref="GeneID:946257" CDS complement(671605..672186) /gene="lptE" /locus_tag="b0641" /gene_synonym="ECK0634; JW0636; rlpB" /function="membrane; Macromolecule synthesis, modification: Lipoprotein" /GO_component="GO:0019866 - organelle inner membrane" /GO_process="GO:0042158 - lipoprotein biosynthetic process" /note="a minor lipoprotein" /codon_start=1 /transl_table=11 /product="LPS assembly OM complex LptDE, lipoprotein component" /protein_id="NP_415174.1" /db_xref="GI:16128624" /db_xref="ASAP:ABE-0002194" /db_xref="UniProtKB/Swiss-Prot:P0ADC1" /db_xref="EcoGene:EG10855" /db_xref="GeneID:946257" /translation="MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPN GPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSIAKDTASVFRNGQTAEYQMIM TVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLP SIRAADIRSDEEQTSTTTDTPATPARVSTTLGN" gene complement(672201..674783) /gene="leuS" /locus_tag="b0642" /gene_synonym="ECK0635; JW0637" /db_xref="EcoGene:EG10532" /db_xref="GeneID:947497" CDS complement(672201..674783) /gene="leuS" /locus_tag="b0642" /gene_synonym="ECK0635; JW0637" /EC_number="6.1.1.4" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /experiment="N-terminus verified by Edman degradation: PMID 3320963" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="leucine tRNA synthetase" /codon_start=1 /transl_table=11 /product="leucyl-tRNA synthetase" /protein_id="NP_415175.1" /db_xref="GI:16128625" /db_xref="ASAP:ABE-0002196" /db_xref="UniProtKB/Swiss-Prot:P07813" /db_xref="EcoGene:EG10532" /db_xref="GeneID:947497" /translation="MQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYP SGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTY DNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCP NDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKT MQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNP ELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGA VMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDH EAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQL PVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYARYTCPQY KEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQ GMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSK NNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTA KGDVAALNVDALTENQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP TDGEQDRALMQEALLAVVRMLNPFTPHICFTLWQELKGEGDIDNAPWPVADEKAMVED STLVVVQVNGKVRAKITVPVDATEEQVRERAGQEHLVAKYLDGVTVRKVIYVPGKLLN LVVG" gene 675018..675500 /gene="ybeL" /locus_tag="b0643" /gene_synonym="ECK0636; JW0638" /db_xref="EcoGene:EG12851" /db_xref="GeneID:945252" CDS 675018..675500 /gene="ybeL" /locus_tag="b0643" /gene_synonym="ECK0636; JW0638" /function="phenotype; Not classified" /note="putative alpha helical protein" /codon_start=1 /transl_table=11 /product="DUF1451 family protein" /protein_id="NP_415176.1" /db_xref="GI:16128626" /db_xref="ASAP:ABE-0002199" /db_xref="UniProtKB/Swiss-Prot:P0AAT9" /db_xref="EcoGene:EG12851" /db_xref="GeneID:945252" /translation="MNKVAQYYRELVASLSERLRNGERDIDALVEQARERVIKTGELT RTEVDELTRAVRRDLEEFAMSYEESLKEESDSVFMRVIKESLWQELADITDKTQLEWR EVFQDLNHHGVYHSGEVVGLGNLVCEKCHFHLPIYTPEVLTLCPKCGHDQFQRRPFEP " gene complement(675570..676547) /gene="ybeQ" /locus_tag="b0644" /gene_synonym="ECK0637; JW5091" /db_xref="EcoGene:EG13647" /db_xref="GeneID:945251" CDS complement(675570..676547) /gene="ybeQ" /locus_tag="b0644" /gene_synonym="ECK0637; JW5091" /codon_start=1 /transl_table=11 /product="Sel1 family TPR-like repeat protein" /protein_id="NP_415177.4" /db_xref="GI:90111158" /db_xref="ASAP:ABE-0002201" /db_xref="UniProtKB/Swiss-Prot:P77234" /db_xref="EcoGene:EG13647" /db_xref="GeneID:945251" /translation="MIFTSSCCDNLSIDEIIERAEKGDCEAQYIVGFYYNRDSAIDSP DDEKAFYWLKLAAEQGHCEAQYSLGQKYTEDKSRHKDNEQAIFWLKKAALQGHTFASN ALGWTLDRGEAPNYKEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYK QAALQGHSDAQNNLADLYEDGKGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNAGE GVDQDYKQAMYWYLKAAAQGSVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECNDA TAWYNLAIMYHYGEGRPVDLRQALDLYRKVQSSGTRDVSQEIRETEDLL" gene 676711..677418 /gene="ybeR" /locus_tag="b0645" /gene_synonym="ECK0638; JW0640" /db_xref="EcoGene:EG13648" /db_xref="GeneID:945249" CDS 676711..677418 /gene="ybeR" /locus_tag="b0645" /gene_synonym="ECK0638; JW0640" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_415178.1" /db_xref="GI:16128628" /db_xref="ASAP:ABE-0002208" /db_xref="UniProtKB/Swiss-Prot:P77627" /db_xref="EcoGene:EG13648" /db_xref="GeneID:945249" /translation="MDMESQKILFALSTPMEIRNECCLPSHSSPKMYLGTCFFDLSSS WGIDDRDDLLRTIHRMIDNGHAARLAGFYHRWFRYSPCEWRDYLAELNEQGQAYAQFV ASTAECCGEGGIKAWDYVRMGFLSRMGVLNNWLSEEESLWIQSRIHLRALRYYSNWRQ YFAGYTFGRQYWQSPEDDHLPLLREFLARKEYDDSGNDMFYQLFASDDAYYPTLSWQP LAYYSACPETLKDMSDL" gene 677415..678842 /gene="djlB" /locus_tag="b0646" /gene_synonym="ECK0639; JW0641; ybeS" /db_xref="EcoGene:EG13649" /db_xref="GeneID:945245" CDS 677415..678842 /gene="djlB" /locus_tag="b0646" /gene_synonym="ECK0639; JW0641; ybeS" /function="putative factor; Chaperones" /GO_process="GO:0006457 - protein folding" /note="putative enzyme of polynucleotide modification" /codon_start=1 /transl_table=11 /product="putative HscC co-chaperone, uncharacterized J domain-containing protein" /protein_id="NP_415179.1" /db_xref="GI:16128629" /db_xref="ASAP:ABE-0002210" /db_xref="UniProtKB/Swiss-Prot:P77381" /db_xref="EcoGene:EG13649" /db_xref="GeneID:945245" /translation="MKNCWKILDIEETTDVDIIRRAYLALLPSFHPETDPQGFKQLRQ AYEEALRIAQSPAKSVWQPEEYEVAEHEILLAFRALLASDSERFLPSAWQRFIQQLNY CSMEEIDELRWSLCTIAMNTAHLSFECVVLLAERLRWLQEENTGEIDEEELESFLYAI AKGNVFNFQTILHLPVAVQNDTIDFYQMFARIWSSHPQWLTLYLAQHRAVIIPDDAKL HRNLLRWYSAGRLDIPELLDYAQSWRETEPDNEDAPYYEYAQRVYCGEGESLLAELCD YWREYPSTQADALMLQWCRQHRVDYYPLLVMMIEARDLVNDQGKPLLYVPGDSARTRF HLYEILSDEKLSALGRSLVEMVLHKGRKPRISLTRDTEHTLWPLYLVAKQLVQACQPT EESLMPIVSRLDAENRCPLEALIIRRLLIQAANFTEKQTVEPEPQPQPMPVDDGGPGC LGIIKIIFYIFIFAGLIGKILHLFG" gene complement(678852..679406) /gene="ybeT" /locus_tag="b0647" /gene_synonym="ECK0640; JW0642" /db_xref="EcoGene:EG13650" /db_xref="GeneID:945243" CDS complement(678852..679406) /gene="ybeT" /locus_tag="b0647" /gene_synonym="ECK0640; JW0642" /codon_start=1 /transl_table=11 /product="Sel1 family TPR-like repeat protein" /protein_id="NP_415180.1" /db_xref="GI:16128630" /db_xref="ASAP:ABE-0002213" /db_xref="UniProtKB/Swiss-Prot:P77296" /db_xref="EcoGene:EG13650" /db_xref="GeneID:945243" /translation="MNKKLMYIFAIFIVAAITCISQPKKTTLRDKAMVNYAFDYLSSP GSLPFTTAATELSAIHGHSTSQYRLGEFYLHGSDGKPLDYTQARYWYEQSAEQENPRA QSKLGWIYLKGLGVKPDTRKAILWYKEAAEQGYAHAQYTLGLIYRNGSGINVNHYESQ KWLKLTAKQHYKNAERLLAGLPAH" gene 679508..680215 /gene="ybeU" /locus_tag="b0648" /gene_synonym="ECK0641; JW0643" /db_xref="EcoGene:EG13651" /db_xref="GeneID:945244" CDS 679508..680215 /gene="ybeU" /locus_tag="b0648" /gene_synonym="ECK0641; JW0643" /function="putative enzyme; Not classified" /note="putative tRNA ligase" /codon_start=1 /transl_table=11 /product="DUF1266 family protein" /protein_id="NP_415181.1" /db_xref="GI:16128631" /db_xref="ASAP:ABE-0002220" /db_xref="UniProtKB/Swiss-Prot:P77427" /db_xref="EcoGene:EG13651" /db_xref="GeneID:945244" /translation="MNKEEQYLLFALSAPMEILNQGCKPAHDSPKMYTGIKEFELSSS WGINNRDDLIQTIYQMTDDGHANDLAGLYLTWHRSSPEEWKALIAGGSERGLIYTQFV AQTAMCCGEGGIKAWDYVRMGFLSRVGVLNKWLTEEESLWLQSRVYVRAHHYYHSWMH YFSAYSLGRLYWQSSQCEDNTSLREALTLYKYDSAGSRMFEELAAGSDRFYATLPWQP LTVQSECPVTLKDVSDL" gene 680212..681663 /gene="djlC" /locus_tag="b0649" /gene_synonym="ECK0642; hscD; JW0644; ybeV" /db_xref="EcoGene:EG13652" /db_xref="GeneID:945253" CDS 680212..681663 /gene="djlC" /locus_tag="b0649" /gene_synonym="ECK0642; hscD; JW0644; ybeV" /function="factor; Chaperones" /codon_start=1 /transl_table=11 /product="J domain-containing HscC co-chaperone; Hsc56" /protein_id="NP_415182.1" /db_xref="GI:16128632" /db_xref="ASAP:ABE-0002222" /db_xref="UniProtKB/Swiss-Prot:P77359" /db_xref="EcoGene:EG13652" /db_xref="GeneID:945253" /translation="MKTCWQILEIESTTQIDIIRQAYLARLPLCHPETDPQGFKALRQ AYEEALRLAVNPVEEADDEEKDAAAEHEILRAFRTLLDSESDRFQPSAWQKFIQQLNT WNMEDVDQLRWPLCAIAIEARYLSLNCASLLAERLNWHSFNDSEGMDEEEREAFLEAI QAGDCFDFLSLLEYPIALQNQTVEYYFALERCCRYHPDYVTAFLAMEGPWLIPDDAKL HRKLLRWYSSVQTGMAELIPVAQQWQTEEPESEDARYYLCAQRLYCGEGESLLADLCA YWESYPSTQADNLLLQWSKRHCPDYFALLVMVIEARSMVDAQGQPLKYVPGESARTRL LWAEILHSGKLSPLGQSFIESLFFKRKAWAWWKSRVGSETEQDSPFLDLYRVAEQVVL EAFPKQEMLARLNTRLEGGDAHPLEAIVTRMLLTKVKLEPEDEDVDEPTPENHEEKND EGEKPQSITSIIKISLTVLVIGYALGKIAMLFS" repeat_region 681685..681714 /note="REP57 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(681723..683393) /gene="hscC" /locus_tag="b0650" /gene_synonym="ECK0643; JW0645; ybeW" /db_xref="EcoGene:EG13653" /db_xref="GeneID:945218" CDS complement(681723..683393) /gene="hscC" /locus_tag="b0650" /gene_synonym="ECK0643; JW0645; ybeW" /function="putative enzyme; Not classified" /GO_process="GO:0006457 - protein folding" /codon_start=1 /transl_table=11 /product="Hsp70 family chaperone Hsc62; RpoD-binding transcription inhibitor" /protein_id="NP_415183.1" /db_xref="GI:16128633" /db_xref="ASAP:ABE-0002225" /db_xref="UniProtKB/Swiss-Prot:P77319" /db_xref="EcoGene:EG13653" /db_xref="GeneID:945218" /translation="MDNAELAIGIDLGTTNSLIAVWKDGAAQLIPNKFGEYLTPSIIS MDENNHILVGKPAVSRRTSHPDKTAALFKRAMGSNTNWRLGSDTFNAPELSSLVLRSL KEDAEEFLQRPIKDVVISVPAYFSDEQRKHTRLAAELAGLNAVRLINEPTAAAMAYGL HTQQNTRSLVFDLGGGTFDVTVLEYATPVIEVHASAGDNFLGGEDFTHMLVDEVLKRA DVARTTLNESELAALYACVEAAKCSNQSPLHIRWQYQEETRECEFYENELEDLWLPLL NRLRVPIEQALRDARLKPSQIDSLVLVGGASQMPLVQRIAVRLFGKLPYQSYDPSTIV ALGAAIQAACRLRSEDIEEVILTDICPYSLGVEVNRQGVSGIFSPIIERNTTVPVSRV ETYSTMHPEQDSITVNVYQGENHKVKNNILVESFDVPLKKTGAYQSIDIRFSYDINGL LEVDVLLEDGSVKSRVINHSPVTLSAQQIEESRTRLSALKIYPRDMLINRTFKAKLEE LWARALGDEREEIGRVITDFDAALQSNDMARVDEVRRRASDYLAIEIP" gene complement(683477..684412) /gene="rihA" /locus_tag="b0651" /gene_synonym="ECK0644; JW0646; ybeK" /db_xref="EcoGene:EG12701" /db_xref="GeneID:945503" CDS complement(683477..684412) /gene="rihA" /locus_tag="b0651" /gene_synonym="ECK0644; JW0646; ybeK" /EC_number="3.2.2.-" /function="orf; Not classified" /GO_process="GO:0009226 - nucleotide-sugar biosynthetic process" /codon_start=1 /transl_table=11 /product="ribonucleoside hydrolase 1" /protein_id="NP_415184.1" /db_xref="GI:16128634" /db_xref="ASAP:ABE-0002227" /db_xref="UniProtKB/Swiss-Prot:P41409" /db_xref="EcoGene:EG12701" /db_xref="GeneID:945503" /translation="MALPILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEK TLRNVLRMLTLLNRTDIPVAGGAVKPLMRELIIADNVHGESGLDGPALPEPTFAPQNC TAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMGLGNWT PAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAE LLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTSVERWVGVETQGKYTQGMTVV DYYYLTGNKPNATVMVDVDRQGFVDLLADRLKFYA" gene complement(684530..685255) /gene="gltL" /locus_tag="b0652" /gene_synonym="ECK0645; JW0647" /db_xref="EcoGene:EG12663" /db_xref="GeneID:945254" CDS complement(684530..685255) /gene="gltL" /locus_tag="b0652" /gene_synonym="ECK0645; JW0647" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006532 - aspartate biosynthetic process; GO:0006537 - glutamate biosynthetic process" /note="ATP-binding protein of glutamate/aspartate transport system" /codon_start=1 /transl_table=11 /product="glutamate/aspartate ABC transporter ATPase" /protein_id="NP_415185.1" /db_xref="GI:16128635" /db_xref="ASAP:ABE-0002232" /db_xref="UniProtKB/Swiss-Prot:P0AAG3" /db_xref="EcoGene:EG12663" /db_xref="GeneID:945254" /translation="MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLI KTVNGLEPVQQGEITVDGIVVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQ VKVLKRDKAPAREKALKLLERVGLSAHANKFPAQLSGGQQQRVAIARALCMDPIAMLF DEPTSALDPEMINEVLDVMVELANEGMTMMVVTHEMGFARKVANRVIFMDEGKIVEDS PKDAFFDDPKSDRAKDFLAKILH" gene complement(685255..685929) /gene="gltK" /locus_tag="b0653" /gene_synonym="ECK0646; JW0648" /db_xref="EcoGene:EG12662" /db_xref="GeneID:947354" CDS complement(685255..685929) /gene="gltK" /locus_tag="b0653" /gene_synonym="ECK0646; JW0648" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006532 - aspartate biosynthetic process; GO:0006537 - glutamate biosynthetic process" /note="glutamate/aspartate transport system permease; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="glutamate/aspartate ABC transporter permease" /protein_id="NP_415186.1" /db_xref="GI:16128636" /db_xref="ASAP:ABE-0002234" /db_xref="UniProtKB/Swiss-Prot:P0AER5" /db_xref="EcoGene:EG12662" /db_xref="GeneID:947354" /translation="MYEFDWSSIVPSLPYLLDGLVITLKITVTAVVIGILWGTMLAVM RLSSFAPVAWFAKAYVNVFRSIPLVMVLLWFYLIVPGFLQNVLGLSPKNDIRLISAMV AFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLT QGIVLFQDTSLVYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSY LKRRTA" gene complement(685929..686669) /gene="gltJ" /locus_tag="b0654" /gene_synonym="ECK0647; JW0649" /db_xref="EcoGene:EG12661" /db_xref="GeneID:945443" CDS complement(685929..686669) /gene="gltJ" /locus_tag="b0654" /gene_synonym="ECK0647; JW0649" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006532 - aspartate biosynthetic process; GO:0006537 - glutamate biosynthetic process" /note="glutamate/aspartate transport system permease; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="glutamate/aspartate ABC transporter permease" /protein_id="NP_415187.1" /db_xref="GI:16128637" /db_xref="ASAP:ABE-0002239" /db_xref="UniProtKB/Swiss-Prot:P0AER3" /db_xref="EcoGene:EG12661" /db_xref="GeneID:945443" /translation="MSIDWNWGIFLQQAPFGNTTYLGWIWSGFQVTIALSICAWIIAF LVGSFFGILRTVPNRFLSGLGTLYVELFRNVPLIVQFFTWYLVIPELLPEKIGMWFKA ELDPNIQFFLSSMLCLGLFTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVL LPNAYRVIVPPMTSEMMNLVKNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLA YVLINAFIMLVMTLVERKVRLPGNMGGK" repeat_region 686750..686774 /note="REP58 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(686839..687747) /gene="gltI" /locus_tag="b0655" /gene_synonym="ECK0648; JW5092; ybeJ; yzzK" /db_xref="EcoGene:EG12700" /db_xref="GeneID:946938" CDS complement(686839..687747) /gene="gltI" /locus_tag="b0655" /gene_synonym="ECK0648; JW5092; ybeJ; yzzK" /function="transport; Amino acids" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006537 - glutamate biosynthetic process" /note="periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="glutamate/aspartate periplasmic binding protein" /protein_id="NP_415188.1" /db_xref="GI:16128638" /db_xref="ASAP:ABE-0002241" /db_xref="UniProtKB/Swiss-Prot:P37902" /db_xref="EcoGene:EG12700" /db_xref="GeneID:946938" /translation="MQLRKPATAILALALSAGLAQADDAAPAAGSTLDKIAKNGVIVV GHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLL QNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIKDFANLKDKAVVVTS GTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKK PDNWEIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNPIPP KNLNMNFELSDEMKALFKEPNDKALN" mobile_element complement(687851..689045) /mobile_element_type="insertion sequence:IS5D" gene complement(687997..689013) /gene="insH1" /locus_tag="b0656" /gene_synonym="ECK0261" /db_xref="EcoGene:EG40008" /db_xref="GeneID:944917" CDS complement(687997..689013) /gene="insH1" /locus_tag="b0656" /gene_synonym="ECK0261" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS5 transposase and trans-activator" /protein_id="NP_415189.1" /db_xref="GI:16128639" /db_xref="ASAP:ABE-0002246" /db_xref="UniProtKB/Swiss-Prot:P0CE51" /db_xref="EcoGene:EG40008" /db_xref="GeneID:944917" /translation="MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQIL PWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLF ARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIE APSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQL GNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINI EYMKASIRARVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRADQMIRQW ERSH" repeat_region 689264..689297 /note="REP59 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(689343..690881) /gene="lnt" /locus_tag="b0657" /gene_synonym="cutE; ECK0649; JW0654" /db_xref="EcoGene:EG10168" /db_xref="GeneID:946201" CDS complement(689343..690881) /gene="lnt" /locus_tag="b0657" /gene_synonym="cutE; ECK0649; JW0654" /EC_number="2.3.1.-" /function="enzyme; Transport of small molecules: Cations" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042158 - lipoprotein biosynthetic process" /note="apolipoprotein N-acyltransferase, copper homeostasis protein, inner membrane" /codon_start=1 /transl_table=11 /product="apolipoprotein N-acyltransferase" /protein_id="NP_415190.1" /db_xref="GI:16128640" /db_xref="ASAP:ABE-0002250" /db_xref="UniProtKB/Swiss-Prot:P23930" /db_xref="EcoGene:EG10168" /db_xref="GeneID:946201" /translation="MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGL QALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLS LYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPL KGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQP EKTIQVSMVQGDIPQSLKWDEGQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEIN QQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYN KNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSANGIELTAAICYEIIL GEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITA VIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSLR QRRK" gene complement(690906..691784) /gene="ybeX" /locus_tag="b0658" /gene_synonym="corC; ECK0650; JW0655" /db_xref="EcoGene:EG13654" /db_xref="GeneID:946417" CDS complement(690906..691784) /gene="ybeX" /locus_tag="b0658" /gene_synonym="corC; ECK0650; JW0655" /function="putative transport; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative ion transport" /protein_id="NP_415191.1" /db_xref="GI:16128641" /db_xref="ASAP:ABE-0002252" /db_xref="UniProtKB/Swiss-Prot:P0AE78" /db_xref="EcoGene:EG13654" /db_xref="GeneID:946417" /translation="MSDDNSHSSDTISNKKGFFSLLLSQLFHGEPKNRDELLALIRDS GQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSR FPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFRS QRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALA SIEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGETIDIDGYQFKVAMADSRRIIQ VHVKIPDDSPQPKLDE" gene complement(691874..692341) /gene="ybeY" /locus_tag="b0659" /gene_synonym="ECK0651; JW0656" /db_xref="EcoGene:EG13655" /db_xref="GeneID:946430" CDS complement(691874..692341) /gene="ybeY" /locus_tag="b0659" /gene_synonym="ECK0651; JW0656" /codon_start=1 /transl_table=11 /product="ssRNA-specific endoribonuclease; 16S rRNA 3' end maturation and quality control co-endoribonuclease working with RNase R; rRNA transcription antitermination factor" /protein_id="NP_415192.1" /db_xref="GI:16128642" /db_xref="ASAP:ABE-0002255" /db_xref="UniProtKB/Swiss-Prot:P0A898" /db_xref="EcoGene:EG13655" /db_xref="GeneID:946430" /translation="MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQFQEESEVTIR VVDTAESHSLNLTYRGKDKPTNVLSFPFEVPPGMEMSLLGDLVICRQVVEKEAQEQGK PLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAEKE" gene complement(692338..693378) /gene="ybeZ" /locus_tag="b0660" /gene_synonym="ECK0652; JW0657; phoL" /db_xref="EcoGene:EG13656" /db_xref="GeneID:948044" CDS complement(692338..693378) /gene="ybeZ" /locus_tag="b0660" /gene_synonym="ECK0652; JW0657; phoL" /note="putative ATP-binding protein in pho regulon" /codon_start=1 /transl_table=11 /product="heat shock protein, putative NTPase; PhoH-like protein" /protein_id="NP_415193.2" /db_xref="GI:145698230" /db_xref="ASAP:ABE-0002257" /db_xref="UniProtKB/Swiss-Prot:P0A9K3" /db_xref="EcoGene:EG13656" /db_xref="GeneID:948044" /translation="MNIDTREITLEPADNARLLSLCGPFDDNIKQLERRLGIEINRRD NHFKLTGRPICVTAAADILRSLYVDTAPMRGQIQDIEPEQIHLAIKEARVLEQSAESV PEYGKAVNIKTKRGVIKPRTPNQAQYIANILDHDITFGVGPAGTGKTYLAVAAAVDAL ERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFEKVEKLIER NVIEVAPLAYMRGRTLNDAFIILDESQNTTIEQMKMFLTRIGFNSKAVITGDVTQIDL PRNTKSGLRHAIEVLADVEEISFNFFHSEDVVRHPVVARIVNAYEAWEEAEQKRKAAL AAERKREEQEQK" gene complement(693531..694955) /gene="miaB" /locus_tag="b0661" /gene_synonym="ECK0653; JW0658; yleA" /db_xref="EcoGene:EG13657" /db_xref="GeneID:945260" CDS complement(693531..694955) /gene="miaB" /locus_tag="b0661" /gene_synonym="ECK0653; JW0658; yleA" /function="enzyme; tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="tRNA-i(6)A37 methylthiotransferase" /protein_id="NP_415194.1" /db_xref="GI:16128644" /db_xref="ASAP:ABE-0002260" /db_xref="UniProtKB/Swiss-Prot:P0AEI1" /db_xref="EcoGene:EG13657" /db_xref="GeneID:945260" /translation="MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVL LLNTCSIREKAQEKVFHQLGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDII FGPQTLHRLPEMINSVRGDRSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKY CTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSF ADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNL MGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSY SFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGT SRKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPNSLRGKVVRTEDEMGLRV AETPESVIARTRKENDLGVGYYQP" gene 695101..696276 /gene="ubiF" /locus_tag="b0662" /gene_synonym="ECK0654; JW0659; yleB" /db_xref="EcoGene:EG13658" /db_xref="GeneID:945261" CDS 695101..696276 /gene="ubiF" /locus_tag="b0662" /gene_synonym="ECK0654; JW0659; yleB" /EC_number="1.14.13.-" /codon_start=1 /transl_table=11 /product="2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol oxygenase" /protein_id="NP_415195.1" /db_xref="GI:16128645" /db_xref="ASAP:ABE-0002265" /db_xref="UniProtKB/Swiss-Prot:P75728" /db_xref="EcoGene:EG13658" /db_xref="GeneID:945261" /translation="MTNQPTEIAIVGGGMVGGALALGLAQHGFAVTVIEHAEPAPFVA DSQPDVRISAISAASVSLLKGLGVWDAVQAMRCHPYRRLETWEWETAHVVFDAAELKL PLLGYMVENTVLQQALWQALEAHPKVTLRVPGSLIALHRHDDLQELELKGGEVIRAKL VIGADGANSQVRQMAGIGVHAWQYAQSCMLISVQCENDPGDSTWQQFTPDGPRAFLPL FDNWASLVWYDSPARIRQLQNMNMAQLQAEIAKHFPSRLGYVTPLAAGAFPLTRRHAL QYVQPGLALVGDAAHTIHPLAGQGVNLGYRDVDALIDVLVNARSYGEAWASYPVLKRY QMRRMADNFIMQSGMDLFYAGFSNNLPPLRFMRNLGLMAAERAGVLKRQALKYALGL" repeat_region 696307..696377 /note="REP60 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(696430..696504) /gene="glnX" /locus_tag="b0664" /gene_synonym="ECK0655; glnVbeta; JWR0011; supE" /db_xref="EcoGene:EG30031" /db_xref="GeneID:945257" tRNA complement(696430..696504) /gene="glnX" /locus_tag="b0664" /gene_synonym="ECK0655; glnVbeta; JWR0011; supE" /product="tRNA-Gln" /note="anticodon: CUG" /db_xref="ASAP:ABE-0002272" /db_xref="EcoGene:EG30031" /db_xref="GeneID:945257" gene complement(696542..696616) /gene="glnV" /locus_tag="b0665" /gene_synonym="ECK0656; glnValpha; JWR0012; Su2; suII; supE" /db_xref="EcoGene:EG30029" /db_xref="GeneID:945255" tRNA complement(696542..696616) /gene="glnV" /locus_tag="b0665" /gene_synonym="ECK0656; glnValpha; JWR0012; Su2; suII; supE" /product="tRNA-Gln" /note="anticodon: CUG" /db_xref="ASAP:ABE-0002274" /db_xref="EcoGene:EG30029" /db_xref="GeneID:945255" gene complement(696664..696740) /gene="metU" /locus_tag="b0666" /gene_synonym="ECK0657; JWR0013; metTbeta" /db_xref="EcoGene:EG30059" /db_xref="GeneID:945262" tRNA complement(696664..696740) /gene="metU" /locus_tag="b0666" /gene_synonym="ECK0657; JWR0013; metTbeta" /product="tRNA-Met" /note="anticodon: CAU" /db_xref="ASAP:ABE-0002276" /db_xref="EcoGene:EG30059" /db_xref="GeneID:945262" gene complement(696756..696830) /gene="glnW" /locus_tag="b0668" /gene_synonym="ECK0658; glnUbeta; JWR0014" /db_xref="EcoGene:EG30030" /db_xref="GeneID:945750" tRNA complement(696756..696830) /gene="glnW" /locus_tag="b0668" /gene_synonym="ECK0658; glnUbeta; JWR0014" /product="tRNA-Gln" /note="anticodon: UUG" /db_xref="ASAP:ABE-0002280" /db_xref="EcoGene:EG30030" /db_xref="GeneID:945750" gene complement(696865..696939) /gene="glnU" /locus_tag="b0670" /gene_synonym="ECK0659; glnUalpha; JWR0015; supB" /db_xref="EcoGene:EG30028" /db_xref="GeneID:945269" tRNA complement(696865..696939) /gene="glnU" /locus_tag="b0670" /gene_synonym="ECK0659; glnUalpha; JWR0015; supB" /product="tRNA-Gln" /note="anticodon: UUG" /db_xref="ASAP:ABE-0002284" /db_xref="EcoGene:EG30028" /db_xref="GeneID:945269" gene complement(696963..697047) /gene="leuW" /locus_tag="b0672" /gene_synonym="ECK0660; feeB; JWR0016" /db_xref="EcoGene:EG30052" /db_xref="GeneID:945264" tRNA complement(696963..697047) /gene="leuW" /locus_tag="b0672" /gene_synonym="ECK0660; feeB; JWR0016" /product="tRNA-Leu" /note="anticodon: CAA" /db_xref="ASAP:ABE-0002288" /db_xref="EcoGene:EG30052" /db_xref="GeneID:945264" gene complement(697057..697133) /gene="metT" /locus_tag="b0673" /gene_synonym="ECK0661; JWR0017; metTalpha" /db_xref="EcoGene:EG30058" /db_xref="GeneID:945280" tRNA complement(697057..697133) /gene="metT" /locus_tag="b0673" /gene_synonym="ECK0661; JWR0017; metTalpha" /product="tRNA-Met" /note="anticodon: CAU" /db_xref="ASAP:ABE-0002290" /db_xref="EcoGene:EG30058" /db_xref="GeneID:945280" gene complement(697513..699177) /gene="asnB" /locus_tag="b0674" /gene_synonym="ECK0662; JW0660" /db_xref="EcoGene:EG10092" /db_xref="GeneID:945281" CDS complement(697513..699177) /gene="asnB" /locus_tag="b0674" /gene_synonym="ECK0662; JW0660" /EC_number="6.3.5.4" /function="enzyme; Amino acid biosynthesis: Asparagine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006529 - asparagine biosynthetic process; GO:0009063 - cellular amino acid catabolic process" /codon_start=1 /transl_table=11 /product="asparagine synthetase B" /protein_id="NP_415200.1" /db_xref="GI:16128650" /db_xref="ASAP:ABE-0002292" /db_xref="UniProtKB/Swiss-Prot:P22106" /db_xref="EcoGene:EG10092" /db_xref="GeneID:945281" /translation="MCSIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNA ILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEV ILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVAS EMKALVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALED SVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP GSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMS RKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKA MSAWGVEARVPFLDKKFLDVAMRINPQDKMCGNGKMEKHILRECFEAYLPASVAWRQK EQFSDGVGYSWIDTLKEVAAQQVSDQQLETARFRFPYNTPTSKEAYLYREIFEELFPL PSAAECVPGGPSVACSSAKAIEWDEAFKKMDDPSGRAVGVHQSAYK" repeat_region 699425..699522 /note="RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(699574..700326) /gene="umpH" /locus_tag="b0675" /gene_synonym="ECK0663; JW0661; nagD" /db_xref="EcoGene:EG10634" /db_xref="GeneID:945283" CDS complement(699574..700326) /gene="umpH" /locus_tag="b0675" /gene_synonym="ECK0663; JW0661; nagD" /function="enzyme; Central intermediary metabolism: Amino sugars" /GO_process="GO:0046349 - amino sugar biosynthetic process" /note="N-acetylglucosamine metabolism" /codon_start=1 /transl_table=11 /product="UMP phosphatase" /protein_id="NP_415201.1" /db_xref="GI:16128651" /db_xref="ASAP:ABE-0002296" /db_xref="UniProtKB/Swiss-Prot:P0AF24" /db_xref="EcoGene:EG10634" /db_xref="GeneID:945283" /translation="MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNY PSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKA GFTITDVNPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALC AGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETI LVLSGVSSLDDIDSMPFRPSWIYPSVAEIDVI" gene complement(700374..701594) /gene="nagC" /locus_tag="b0676" /gene_synonym="ECK0664; JW0662; nagR" /db_xref="EcoGene:EG10636" /db_xref="GeneID:945285" CDS complement(700374..701594) /gene="nagC" /locus_tag="b0676" /gene_synonym="ECK0664; JW0662; nagR" /function="regulator; Central intermediary metabolism: Amino sugars" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0046349 - amino sugar biosynthetic process; GO:0006350 - transcription; GO:0009386 - translational attenuation" /note="transcriptional repressor of nag (N-acetylglucosamine) operon" /codon_start=1 /transl_table=11 /product="N-acetylglucosamine-inducible nag divergent operon transcriptional repressor" /protein_id="NP_415202.1" /db_xref="GI:16128652" /db_xref="ASAP:ABE-0002299" /db_xref="UniProtKB/Swiss-Prot:P0AF20" /db_xref="EcoGene:EG10636" /db_xref="GeneID:945285" /translation="MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQL APASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITL FDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDP DSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILV RVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQ RVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFN PQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFALVKR AMLNGILLQHLLEN" gene complement(701603..702751) /gene="nagA" /locus_tag="b0677" /gene_synonym="ECK0665; JW0663" /db_xref="EcoGene:EG10632" /db_xref="GeneID:945289" CDS complement(701603..702751) /gene="nagA" /locus_tag="b0677" /gene_synonym="ECK0665; JW0663" /EC_number="3.5.1.25" /function="enzyme; Central intermediary metabolism: Amino sugars" /GO_process="GO:0046349 - amino sugar biosynthetic process" /codon_start=1 /transl_table=11 /product="N-acetylglucosamine-6-phosphate deacetylase" /protein_id="NP_415203.1" /db_xref="GI:16128653" /db_xref="ASAP:ABE-0002301" /db_xref="UniProtKB/Swiss-Prot:P0AF18" /db_xref="EcoGene:EG10632" /db_xref="GeneID:945289" /translation="MYALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQR SLNGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITT SDELMKQGVRVMREYLAKHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAALVDFLC ENADVITKVTLAPEMVPAEVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLY NAMPYITGREPGLAGAILDEADIYCGIIADGLHVDYANIRNAKRLKGDKLCLVTDATA PAGANIEQFIFAGKTIYYRNGLCVDENGTLSGSSLTMIEGVRNLVEHCGIALDEVLRM ATLYPARAIGVEKRLGTLAAGKVANLTAFTPDFKITKTIVNGNEVVTQ" gene complement(702811..703611) /gene="nagB" /locus_tag="b0678" /gene_synonym="ECK0666; glmD; JW0664" /db_xref="EcoGene:EG10633" /db_xref="GeneID:945290" CDS complement(702811..703611) /gene="nagB" /locus_tag="b0678" /gene_synonym="ECK0666; glmD; JW0664" /EC_number="3.5.99.6" /function="enzyme; Central intermediary metabolism: Amino sugars" /GO_process="GO:0046349 - amino sugar biosynthetic process" /codon_start=1 /transl_table=11 /product="glucosamine-6-phosphate deaminase" /protein_id="NP_415204.1" /db_xref="GI:16128654" /db_xref="ASAP:ABE-0002304" /db_xref="UniProtKB/Swiss-Prot:P0A759" /db_xref="EcoGene:EG10633" /db_xref="GeneID:945290" /translation="MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGT PMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAE NINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIK TLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEG CVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTLRYFNELEAENIKGL" gene 703944..705890 /gene="nagE" /locus_tag="b0679" /gene_synonym="ECK0667; JW0665; pstN; ptsN" /db_xref="EcoGene:EG10635" /db_xref="GeneID:945292" CDS 703944..705890 /gene="nagE" /locus_tag="b0679" /gene_synonym="ECK0667; JW0665; pstN; ptsN" /EC_number="2.7.1.69" /function="enzyme; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009310 - amine catabolic process; GO:0046349 - amino sugar biosynthetic process" /note="PTS system, N-acetylglucosamine-specific enzyme IIABC" /codon_start=1 /transl_table=11 /product="N-acetyl glucosamine specific PTS enzyme IIC, IIB, and IIA components" /protein_id="NP_415205.1" /db_xref="GI:16128655" /db_xref="ASAP:ABE-0002312" /db_xref="UniProtKB/Swiss-Prot:P09323" /db_xref="EcoGene:EG10635" /db_xref="GeneID:945292" /translation="MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQA GGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGYFVLTKAMVTINPEINMGVLAGI ITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIH AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINR FYAGDGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGV TEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAGAIDYALMYNLPAAS QNVWMLLVMGVIFFAIYFVVFSLVIRMFNLKTPGREDKEDEIVTEEANSNTEEGLTQL ATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASGVVKLNKQTIQVI VGAKAESIGDAMKKVVARGPVAAASAEATPATAAPVAKPQAVPNAVSIAELVSPITGD VVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEKGAEI VVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDD FSGLIIKAQGHIVAGQTPLYEIKK" repeat_region 705897..705932 /note="REP62 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 706093..707757 /gene="glnS" /locus_tag="b0680" /gene_synonym="ECK0668; JW0666" /db_xref="EcoGene:EG10390" /db_xref="GeneID:945310" CDS 706093..707757 /gene="glnS" /locus_tag="b0680" /gene_synonym="ECK0668; JW0666" /EC_number="6.1.1.18" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="glutamine tRNA synthetase" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA synthetase" /protein_id="NP_415206.1" /db_xref="GI:16128656" /db_xref="ASAP:ABE-0002317" /db_xref="UniProtKB/Swiss-Prot:P00962" /db_xref="EcoGene:EG10390" /db_xref="GeneID:945310" /translation="MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGH AKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSD YFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEK MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCI SDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRE DLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNKPEMGSRQVPFSGEIWIDRAD FREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADG RKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGAADDFLSVINPESLVIKQGFAEPSL KDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE" repeat_region 707770..707934 /note="RIP63 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site" gene 708334..709740 /gene="chiP" /locus_tag="b0681" /gene_synonym="ECK0669; JW0667; ybfM" /db_xref="EcoGene:EG13659" /db_xref="GeneID:945296" CDS 708334..709740 /gene="chiP" /locus_tag="b0681" /gene_synonym="ECK0669; JW0667; ybfM" /codon_start=1 /transl_table=11 /product="chitoporin, uptake of chitosugars" /protein_id="NP_415207.1" /db_xref="GI:16128657" /db_xref="ASAP:ABE-0002323" /db_xref="UniProtKB/Swiss-Prot:P75733" /db_xref="EcoGene:EG13659" /db_xref="GeneID:945296" /translation="MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGG IYYWQRERDRKDVTDGDKYKTNLSHSTWNANLDFQSGYAADMFGLDIAAFTAIEMAEN GDSSHPNEIAFSKSNKAYDEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLL APHWSFMPGTYQGAEAGANFDYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKV DYLHSFGAKYDFKNNFVLEAAFGQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRD KVDDRSVNDLYDGTAWLQALTFGYRAADVVDLRLEGTWVKADGQQGYFLQRMTPTYAS SNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGFAIGASYVYAWDAKPATWQS NPDAYYDKNRTIEESAYSLDAVYTIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNI FQDERDVKFMVIAPFTIF" gene 709790..710116 /gene="chiQ" /locus_tag="b0682" /gene_synonym="ECK0670; JW0668; ybfN" /db_xref="EcoGene:EG13660" /db_xref="GeneID:945713" CDS 709790..710116 /gene="chiQ" /locus_tag="b0682" /gene_synonym="ECK0670; JW0668; ybfN" /codon_start=1 /transl_table=11 /product="chitosugar-induced verified lipoprotein" /protein_id="NP_415208.1" /db_xref="GI:16128658" /db_xref="ASAP:ABE-0002325" /db_xref="UniProtKB/Swiss-Prot:P75734" /db_xref="EcoGene:EG13660" /db_xref="GeneID:945713" /translation="MKKLILIAIMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSP EKIEACQSVLNVLKKEKQHQQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQE IRSNNK" gene complement(710200..710646) /gene="fur" /locus_tag="b0683" /gene_synonym="ECK0671; JW0669" /db_xref="EcoGene:EG10359" /db_xref="GeneID:945295" CDS complement(710200..710646) /gene="fur" /locus_tag="b0683" /gene_synonym="ECK0671; JW0669" /function="regulator; Global regulatory functions" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="negative regulator" /codon_start=1 /transl_table=11 /product="ferric iron uptake regulon transcriptional repressor; autorepressor" /protein_id="NP_415209.1" /db_xref="GI:16128659" /db_xref="ASAP:ABE-0002327" /db_xref="UniProtKB/Swiss-Prot:P0A9A9" /db_xref="EcoGene:EG10359" /db_xref="GeneID:945295" /translation="MTDNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLI DMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELTQQHHHDHLICLDCGKVIEF SDDSIEARQREIAAKHGIRLTNHSLYLYGHCAEGDCREDEHAHEGK" gene complement(710639..710725) /gene="uof" /locus_tag="b4637" /gene_synonym="ECK4461" /db_xref="EcoGene:EG14465" /db_xref="GeneID:5625562" CDS complement(710639..710725) /gene="uof" /locus_tag="b4637" /gene_synonym="ECK4461" /codon_start=1 /transl_table=11 /product="ryhB-regulated fur leader peptide" /protein_id="YP_001491546.1" /db_xref="GI:157783150" /db_xref="UniProtKB/Swiss-Prot:A8DYP9" /db_xref="EcoGene:EG14465" /db_xref="GeneID:5625562" /translation="MIRIISRANSVTSSNEVNRLVTGQIPHD" repeat_region 710908..710940 /note="REP64 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(710935..711465) /gene="fldA" /locus_tag="b0684" /gene_synonym="ECK0672; JW0671" /db_xref="EcoGene:EG10318" /db_xref="GeneID:945293" CDS complement(710935..711465) /gene="fldA" /locus_tag="b0684" /gene_synonym="ECK0672; JW0671" /function="enzyme; Energy metabolism, carbon: Electron transport" /codon_start=1 /transl_table=11 /product="flavodoxin 1" /protein_id="NP_415210.1" /db_xref="GI:16128660" /db_xref="ASAP:ABE-0002332" /db_xref="UniProtKB/Swiss-Prot:P61949" /db_xref="EcoGene:EG10318" /db_xref="GeneID:945293" /translation="MAITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDL EAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDAL GTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKW VKQISEELHLDEILNA" gene complement(711605..711898) /gene="ybfE" /locus_tag="b0685" /gene_synonym="ECK0673; JW5816" /db_xref="EcoGene:EG11775" /db_xref="GeneID:945291" CDS complement(711605..711898) /gene="ybfE" /locus_tag="b0685" /gene_synonym="ECK0673; JW5816" /GO_process="GO:0009432 - SOS response" /codon_start=1 /transl_table=11 /product="LexA-regulated protein, CopB family" /protein_id="NP_415211.2" /db_xref="GI:90111159" /db_xref="ASAP:ABE-0002335" /db_xref="UniProtKB/Swiss-Prot:P0AAU7" /db_xref="EcoGene:EG11775" /db_xref="GeneID:945291" /translation="MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKR DKVRGLKRVELKLNAEAVEALNELAESRNMSRSELIEEMLMQQLAALRSQGIV" gene complement(712038..712802) /gene="ybfF" /locus_tag="b0686" /gene_synonym="ECK0674; JW0673" /db_xref="EcoGene:EG11776" /db_xref="GeneID:945288" CDS complement(712038..712802) /gene="ybfF" /locus_tag="b0686" /gene_synonym="ECK0674; JW0673" /codon_start=1 /transl_table=11 /product="acyl-CoA esterase" /protein_id="NP_415212.1" /db_xref="GI:16128662" /db_xref="ASAP:ABE-0002337" /db_xref="UniProtKB/Swiss-Prot:P75736" /db_xref="EcoGene:EG11776" /db_xref="GeneID:945288" /translation="MKLNIRAQTAQNQHNNSPIVLVHGLFGSLDNLGVLARDLVNDHN IIQVDMRNHGLSPRDPVMNYPAMAQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALA SDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQ FLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYVSEQYRDDLL AQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND" gene 712987..713532 /gene="seqA" /locus_tag="b0687" /gene_synonym="ECK0675; hsm-1; JW0674" /db_xref="EcoGene:EG12197" /db_xref="GeneID:945272" CDS 712987..713532 /gene="seqA" /locus_tag="b0687" /gene_synonym="ECK0675; hsm-1; JW0674" /function="regulator; DNA - replication, repair, restriction/modification" /experiment="N-terminus verified by Edman degradation: PMID 7553853" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006261 - DNA-dependent DNA replication" /codon_start=1 /transl_table=11 /product="negative modulator of initiation of replication" /protein_id="NP_415213.1" /db_xref="GI:16128663" /db_xref="ASAP:ABE-0002343" /db_xref="UniProtKB/Swiss-Prot:P0AFY8" /db_xref="EcoGene:EG12197" /db_xref="GeneID:945272" /translation="MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAP VTKEVRVASPAIVEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLD AQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMI EHIMQSMQFPAELIEKVCGTI" gene 713558..715198 /gene="pgm" /locus_tag="b0688" /gene_synonym="blu; ECK0676; JW0675; pgmA" /db_xref="EcoGene:EG12144" /db_xref="GeneID:945271" CDS 713558..715198 /gene="pgm" /locus_tag="b0688" /gene_synonym="blu; ECK0676; JW0675; pgmA" /EC_number="5.4.2.2" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006006 - glucose metabolic process" /codon_start=1 /transl_table=11 /product="phosphoglucomutase" /protein_id="NP_415214.1" /db_xref="GI:16128664" /db_xref="ASAP:ABE-0002345" /db_xref="UniProtKB/Swiss-Prot:P36938" /db_xref="EcoGene:EG12144" /db_xref="GeneID:945271" /translation="MAIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGT SGHRGSAARHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVL AANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPP NGGPADTNVTKVVEDRANALLADGLKGVKRISLDEAMASGHVKEQDLVQPFVEGLADI VDMAAIQKAGLTLGVDPLGGSGIEYWKRIGEYYNLNLTIVNDQVDQTFRFMHLDKDGA IRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQ HRPQWGKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEES AGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAKRFGAPSYNRLQA AATSAQKAALSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARP SGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVLKNA" repeat_region 715264..715361 /note="RIP65 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene 715412..715906 /gene="ybfP" /locus_tag="b0689" /gene_synonym="ECK0677; JW0676" /db_xref="EcoGene:EG14158" /db_xref="GeneID:945274" CDS 715412..715906 /gene="ybfP" /locus_tag="b0689" /gene_synonym="ECK0677; JW0676" /function="putative enzyme; Not classified" /note="putative pectinase" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_415215.1" /db_xref="GI:16128665" /db_xref="ASAP:ABE-0002350" /db_xref="UniProtKB/Swiss-Prot:P75737" /db_xref="EcoGene:EG14158" /db_xref="GeneID:945274" /translation="MKTNRSLVVIVSLITATLLLTACAQPEQSSLAGDWLLTPKDKTR GLTGSIAVNIAPFRCKTNCRGDNLPDNTRRWQLSGGNEKELTYLHNMSAQEKVGLNPG WQCYTSFFMRVCQGKPGTRPIVNEDYVSESGFFGSMMHVGIIELRRCQSENCQQELKA INTH" gene complement(715947..716597) /gene="ybfG" /locus_tag="b0691" /gene_synonym="ECK0678; JW5094; ybfH" /pseudo /db_xref="EcoGene:EG11777" /db_xref="GeneID:945287" CDS complement(715947..716597) /gene="ybfG" /locus_tag="b0691" /gene_synonym="ECK0678; JW5094; ybfH" /note="pseudogene" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0002352" /db_xref="ASAP:ABE-0002355" /db_xref="UniProtKB/Swiss-Prot:P37003" /db_xref="EcoGene:EG11777" /db_xref="GeneID:945287" gene complement(716721..716870) /gene="ybfI" /locus_tag="b4636" /gene_synonym="ECK4436" /pseudo /db_xref="EcoGene:EG12390" /db_xref="GeneID:5625563" CDS complement(716721..716870) /gene="ybfI" /locus_tag="b4636" /gene_synonym="ECK4436" /note="pseudogene" /pseudo /codon_start=1 /transl_table=11 /db_xref="UniProtKB/Swiss-Prot:P39901" /db_xref="EcoGene:EG12390" /db_xref="GeneID:5625563" gene complement(716946..718265) /gene="potE" /locus_tag="b0692" /gene_synonym="ECK0680; JW0679" /db_xref="EcoGene:EG10753" /db_xref="GeneID:945422" CDS complement(716946..718265) /gene="potE" /locus_tag="b0692" /gene_synonym="ECK0680; JW0679" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0015496 - putrescine:ornithine antiporter activity" /GO_process="GO:0009310 - amine catabolic process; GO:0006596 - polyamine biosynthetic process; GO:0006970 - response to osmotic stress" /note="putrescine transport protein" /codon_start=1 /transl_table=11 /product="putrescine/proton symporter: putrescine/ornithine antiporter" /protein_id="NP_415219.1" /db_xref="GI:16128668" /db_xref="ASAP:ABE-0002360" /db_xref="UniProtKB/Swiss-Prot:P0AAF1" /db_xref="EcoGene:EG10753" /db_xref="GeneID:945422" /translation="MSQAKSNKMGVVQLTILTMVNMMGSGIIMLPTKLAEVGTISIIS WLVTAVGSMALAWAFAKCGMFSRKSGGMGGYAEYAFGKSGNFMANYTYGVSLLIANVA IAISAVGYGTELLGASLSPVQIGLATIGVLWICTVANFGGARITGQISSITVWGVIIP VVGLCIIGWFWFSPTLYVDSWNPHHAPFFSAVGSSIAMTLWAFLGLESACANTDVVEN PERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFTPEVGKV IMALMVMSCCGSLLGWQFTIAQVFKSSSDEGYFPKIFSRVTKVDAPVQGMLTIVIIQS GLALMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVANFVA FVGAMYSFYALYSSGEEAMLYGSIVTFLGWTLYGLVSPRFELKNKHG" gene complement(718262..720460) /gene="speF" /locus_tag="b0693" /gene_synonym="ECK0681; JW0680" /db_xref="EcoGene:EG10964" /db_xref="GeneID:945297" CDS complement(718262..720460) /gene="speF" /locus_tag="b0693" /gene_synonym="ECK0681; JW0680" /EC_number="4.1.1.17" /function="enzyme; Central intermediary metabolism: Polyamine biosynthesis" /GO_process="GO:0006596 - polyamine biosynthetic process" /codon_start=1 /transl_table=11 /product="ornithine decarboxylase isozyme, inducible" /protein_id="NP_415220.1" /db_xref="GI:16128669" /db_xref="ASAP:ABE-0002362" /db_xref="UniProtKB/Swiss-Prot:P24169" /db_xref="EcoGene:EG10964" /db_xref="GeneID:945297" /translation="MSKLKIAVSDSCPDCFTTQRECIYINESRNIDVAAIVLSLNDVT CGKLDEIDATGYGIPVFIATENQERVPAEYLPRISGVFENCESRREFYGRQLETAASH YETQLRPPFFRALVDYVNQGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGEALFRADLC NADVAMGDLLIHEGAPCIAQQHAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVL FDRNNHKSNHHGALLQAGATPVYLETARNPYGFIGGIDAHCFEESYLRELIAEVAPQR AKEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMADCS PLLLDLNENDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQQRYVPHKRMNNAFMMH ASTSPFYPLFAALNINAKMHEGVSGRNMWMDCVVNGINARKLILDNCQHIRPFVPELV DGKPWQSYETAQIAVDLRFFQFVPGEHWHSFEGYAENQYFVDPCKLLLTTPGIDARNG EYEAFGVPATILANFLRENGVVPEKCDLNSILFLLTPAEDMAKLQQLVALLVRFEKLL ESDAPLAEVLPSIYKQHEERYAGYTLRQLCQEMHDLYARHNVKQLQKEMFRKEHFPRV SMNPQEANYAYLRGEVELVRLPDAEGRIAAEGALPYPPGVLCVVPGEIWGGAVLRYFS ALEEGINLLPGFAPELQGVYIEEHDGRKQVWCYVIKPRDAQSTLLKGEKL" gene 720583..720840 /gene="ybfK" /locus_tag="b4590" /gene_synonym="ECK4400" /db_xref="EcoGene:EG12869" /db_xref="GeneID:948953" CDS 720583..720840 /gene="ybfK" /locus_tag="b4590" /gene_synonym="ECK4400" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_001165310.1" /db_xref="GI:145698231" /db_xref="UniProtKB/Swiss-Prot:P46121" /db_xref="EcoGene:EG12869" /db_xref="GeneID:948953" /translation="MQKPLPVRWLIIQGLTENEHCGIQAYACNTESQEDLYAEVPLVG RLTGIEEVKVEAIAMSKLHNMSCPPYMGHSAAVIFHLIYLS" gene complement(721056..721733) /gene="kdpE" /locus_tag="b0694" /gene_synonym="ECK0682; JW5096" /db_xref="EcoGene:EG10517" /db_xref="GeneID:945302" CDS complement(721056..721733) /gene="kdpE" /locus_tag="b0694" /gene_synonym="ECK0682; JW5096" /function="regulator; Global regulatory functions" /experiment="N-terminus verified by Edman degradation: PMID 1630317" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="regulator of kdp operon (transcriptional effector)" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with KdpD" /protein_id="NP_415222.1" /db_xref="GI:16128670" /db_xref="ASAP:ABE-0002366" /db_xref="UniProtKB/Swiss-Prot:P21866" /db_xref="EcoGene:EG10517" /db_xref="GeneID:945302" /translation="MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR KPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKP FGIGELQARLRVALRRHSATTAPDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLL AVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETG IGYRFML" gene complement(721730..724414) /gene="kdpD" /locus_tag="b0695" /gene_synonym="ECK0683; JW0683; kac" /db_xref="EcoGene:EG10516" /db_xref="GeneID:946744" CDS complement(721730..724414) /gene="kdpD" /locus_tag="b0695" /gene_synonym="ECK0683; JW0683; kac" /function="enzyme; Global regulatory functions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006464 - protein modification process" /note="sensor for high-affinity potassium transport system; sensory histidine kinase" /codon_start=1 /transl_table=11 /product="fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein" /protein_id="NP_415223.1" /db_xref="GI:16128671" /db_xref="ASAP:ABE-0002368" /db_xref="UniProtKB/Swiss-Prot:P21865" /db_xref="EcoGene:EG10516" /db_xref="GeneID:946744" /translation="MNNEPLRPDPDRLLEQTAAPHRGKLKVFFGACAGVGKTWAMLAE AQRLRAQGLDIVVGVVETHGRKDTAAMLEGLAVLPLKRQAYRGRHISEFDLDAALARR PALILMDELAHSNAPGSRHPKRWQDIEELLEAGIDVFTTVNVQHLESLNDVVSGVTGI QVRETVPDPFFDAADDVVLVDLPPDDLRQRLKEGKVYIAGQAERAIEHFFRKGNLIAL RELALRRTADRVDEQMRAWRGHPGEEKVWHTRDAILLCIGHNTGSEKLVRAAARLASR LGSVWHAVYVETPALHRLPEKKRRAILSALRLAQELGAETATLSDPAEEKAVVRYARE HNLGKIILGRPASRRWWRRETFADRLARIAPDLDQVLVALDEPPARTINNAPDNRSFK DKWRVQIQGCVVAAALCAVITLIAMQWLMAFDAANLVMLYLLGVVVVALFYGRWPSVV ATVINVVSFDLFFIAPRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVRYQARVARYR EQRTRHLYEMSKALAVGRSPQDIAATSEQFIASTFHARSQVLLPDDNGKLQPLTHPQG MTPWDDAIAQWSFDKGLPAGAGTDTLPGVPYQILPLKSGEKTYGLVVVEPGNLRQLMI PEQQRLLETFTLLVANALERLTLTASEEQARMASEREQIRNALLAALSHDLRTPLTVL FGQAEILTLDLASEGSPHARQASEIRQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLT LEEVVGSALQMLEPGLSSPINLSLPEPLTLIHVDGPLFERVLINLLENAVKYAGAQAE IGIDAHVEGENLQLDVWDNGPGLPPGQEQTIFDKFARGNKESAVPGVGLGLAICRAIV DVHGGTITAFNRPEGGACFRVTLPQQTAPELEEFHEDM" gene complement(724407..724979) /gene="kdpC" /locus_tag="b0696" /gene_synonym="ECK0684; JW0684; kac" /db_xref="EcoGene:EG10515" /db_xref="GeneID:947508" CDS complement(724407..724979) /gene="kdpC" /locus_tag="b0696" /gene_synonym="ECK0684; JW0684; kac" /EC_number="3.6.3.12" /function="enzyme; Transport of small molecules: Cations" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism" /note="high-affinity potassium transport system" /codon_start=1 /transl_table=11 /product="potassium translocating ATPase, subunit C" /protein_id="NP_415224.1" /db_xref="GI:16128672" /db_xref="ASAP:ABE-0002374" /db_xref="UniProtKB/Swiss-Prot:P03961" /db_xref="EcoGene:EG10515" /db_xref="GeneID:947508" /translation="MSGLRPALSTFIFLLLITGGVYPLLTTVLGQWWFPWQANGSLIR EGDTVRGSALIGQNFTGNGYFHGRPSATAEMPYNPQASGGSNLAVSNPELDKLIAARV AALRAANPDASASVPVELVTASASGLDNNITPQAAAWQIPRVAKARNLSVEQLTQLIA KYSQQPLVKYIGQPVVNIVELNLALDKLDE" gene complement(724988..727036) /gene="kdpB" /locus_tag="b0697" /gene_synonym="ECK0685; JW0685; kac" /db_xref="EcoGene:EG10514" /db_xref="GeneID:947450" CDS complement(724988..727036) /gene="kdpB" /locus_tag="b0697" /gene_synonym="ECK0685; JW0685; kac" /EC_number="3.6.3.12" /function="enzyme; Transport of small molecules: Cations" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism" /note="ATPase of high-affinity potassium transport system, B chain" /codon_start=1 /transl_table=11 /product="potassium translocating ATPase, subunit B" /protein_id="NP_415225.1" /db_xref="GI:16128673" /db_xref="ASAP:ABE-0002376" /db_xref="UniProtKB/Swiss-Prot:P03960" /db_xref="EcoGene:EG10514" /db_xref="GeneID:947450" /translation="MSRKQLALFEPTLVVQALKEAVKKLNPQAQWRNPVMFIVWIGSL LTTCISIAMASGAMPGNALFSAAISGWLWITVLFANFAEALAEGRSKAQANSLKGVKK TAFARKLREPKYGAAADKVPADQLRKGDIVLVEAGDIIPCDGEVIEGGASVDESAITG ESAPVIRESGGDFASVTGGTRILSDWLVIECSVNPGETFLDRMIAMVEGAQRRKTPNE IALTILLIALTIVFLLATATLWPFSAWGGNAVSVTVLVALLVCLIPTTIGGLLSAIGV AGMSRMLGANVIATSGRAVEAAGDVDVLLLDKTGTITLGNRQASEFIPAQGVDEKTLA DAAQLASLADETPEGRSIVILAKQRFNLRERDVQSLHATFVPFTAQSRMSGINIDNRM IRKGSVDAIRRHVEANGGHFPTDVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIVK GGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQA EGRLVAMTGDGTNDAPALAQADVAVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVHIGK QMLMTRGSLTTFSIANDVAKYFAIIPAAFAATYPQLNALNIMCLHSPDSAILSAVIFN ALIIVFLIPLALKGVSYKPLTASAMLRRNLWIYGLGGLLVPFIGIKVIDLLLTVCGLV " gene complement(727059..728732) /gene="kdpA" /locus_tag="b0698" /gene_synonym="ECK0686; JW0686; kac" /db_xref="EcoGene:EG10513" /db_xref="GeneID:946045" CDS complement(727059..728732) /gene="kdpA" /locus_tag="b0698" /gene_synonym="ECK0686; JW0686; kac" /EC_number="3.6.3.12" /function="enzyme; Transport of small molecules: Cations" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0015662 - ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism" /note="ATPase of high-affinity potassium transport system, A chain" /codon_start=1 /transl_table=11 /product="potassium translocating ATPase, subunit A" /protein_id="NP_415226.1" /db_xref="GI:16128674" /db_xref="ASAP:ABE-0002381" /db_xref="UniProtKB/Swiss-Prot:P03959" /db_xref="EcoGene:EG10513" /db_xref="GeneID:946045" /translation="MAAQGFLLIATFLLVLMVLARPLGSGLARLINDIPLPGTTGVER VLFRALGVSDREMNWKQYLCAILGLNMLGLAVLFFMLLGQHYLPLNPQQLPGLSWDLA LNTAVSFVTNTNWQSYSGETTLSYFSQMAGLTVQNFLSAASGIAVIFALIRAFTRQSM STLGNAWVDLLRITLWVLVPVALLIALFFIQQGALQNFLPYQAVNTVEGAQQLLPMGP VASQEAIKMLGTNGGGFFNANSSHPFENPTALTNFVQMLAIFLIPTALCFAFGEVMGD RRQGRMLLWAMSVIFVICVGVVMWAEVQGNPHLLALGTDSSINMEGKESRFGVLVSSL FAVVTTAASCGAVIAMHDSFTALGGMVPMWLMQIGEVVFGGVGSGLYGMMLFVLLAVF IAGLMIGRTPEYLGKKIDVREMKLTALAILVTPTLVLMGAALAMMTDAGRSAMLNPGP HGFSEVLYAVSSAANNNGSAFAGLSANSPFWNCLLAFCMFVGRFGVIIPVMAIAGSLV SKKSQAASSGTLPTHGPLFVGLLIGTVLLVGALTFIPALALGPVAEYLS" gene complement(728732..728821) /gene="kdpF" /locus_tag="b4513" /gene_synonym="ECK0687; JW0687" /db_xref="EcoGene:EG12126" /db_xref="GeneID:948946" CDS complement(728732..728821) /gene="kdpF" /locus_tag="b4513" /gene_synonym="ECK0687; JW0687" /GO_component="GO:0031225 - anchored to membrane" /codon_start=1 /transl_table=11 /product="potassium ion accessory transporter subunit" /protein_id="YP_588443.1" /db_xref="GI:94541101" /db_xref="ASAP:ABE-0285034" /db_xref="UniProtKB/Swiss-Prot:P36937" /db_xref="EcoGene:EG12126" /db_xref="GeneID:948946" /translation="MSAGVITGVLLVFLLLGYLVYALINAEAF" gene 729134..729340 /gene="ybfA" /locus_tag="b0699" /gene_synonym="ECK0688; JW0688" /db_xref="EcoGene:EG11521" /db_xref="GeneID:947452" CDS 729134..729340 /gene="ybfA" /locus_tag="b0699" /gene_synonym="ECK0688; JW0688" /codon_start=1 /transl_table=11 /product="DUF2517 family protein" /protein_id="NP_415228.1" /db_xref="GI:16128675" /db_xref="ASAP:ABE-0002386" /db_xref="UniProtKB/Swiss-Prot:P0AAU2" /db_xref="EcoGene:EG11521" /db_xref="GeneID:947452" /translation="MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLH RVWSKTSDKPVWMDQAEKATGDFY" gene 729583..733776 /gene="rhsC" /locus_tag="b0700" /gene_synonym="ECK0689; JW0689" /db_xref="EcoGene:EG10848" /db_xref="GeneID:945306" CDS 729583..733776 /gene="rhsC" /locus_tag="b0700" /gene_synonym="ECK0689; JW0689" /codon_start=1 /transl_table=11 /product="Rhs protein with putative toxin domain; putative neighboring cell growth inhibitor" /protein_id="NP_415229.1" /db_xref="GI:16128676" /db_xref="ASAP:ABE-0002392" /db_xref="UniProtKB/Swiss-Prot:P16918" /db_xref="EcoGene:EG10848" /db_xref="GeneID:945306" /translation="MSGKPAARQGDMTQYGGSIVQGSAGVRIGAPTGVACSVCPGGVT SGHPVNPLLGAKVLPGETDIALPGPLPFILSRTYSSYRTKTPAPVGSLGPGWKMPADI RLQLRDNTLILSDNGGRSLYFEHLFPGEDGYSRSESLWLVRGGVAKLDEGHRLAALWQ ALPEELRLSPHRYLATNSPQGPWWLLGWCERVPEADEVLPAPLPPYRVLTGLVDRFGR TQTFHREAAGEFSGEITGVTDGAGRHFRLVLTTQAQRAEEARQQAISGGTEPSAFPDT LPGYTEYGRDNGIRLSAVWLTHDPEYPENLPAAPLVRYGWTPRGELAAVYDRSNTQVR SFTYDDKYRGRMVAHRHTGRPEICYRYDSDGRVTEQLNPAGLSYTYQYEKDRITITDS LNRREVLHTQGEGGLKRVVKKEHADGSVTQSQFDAVGRLRAQTDAAGRTTEYSPDVVT GLITRITTPDGRASAFYYNHHSQLTSATGPDGLEIRREYDEWGRLIQETAPDGDITRY RYDNPHSDLPCATEDATGSRKTMTWSRYGQLLSFTDCSGYVTRYDHDRFGQVTAVHRE EGLSQYRAYDSRGQLIAVKDTQGHETRYEYNAAGDLTTVIAPDGSRNGTQYDAWGKAI CTTQGGLTRSMEYDAAGRVIRLTSENGSHTTFRYDVLDRLIQETGFDGRTQRYHHDLT GKLIRSEDEGLVTHWHYDEADRLTHRTVNGETAERWQYDERGWLTDISHISEGHRVTV HYGYDSKGRLASEHLTVHHPQTNELLWQHETRHAYNAQGLANRCIPDSLPAVEWLTYG SGWLSGMKLGDTPLVEYTRDRLHRETLRSFGRYELTTAYTPAGQLQSQHLNSLLSDRD YTWNDNGELIRISSPRQTRSYSYSTTGRLTGVHTTAANLDIRIPYTTDPAGNRLPDPE LHPDSALSMWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQ HRLVHYTRTQYAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPQVTWYGWD GDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADTLQQSGGEDGGS VVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVAQMQSQMDPVYTPARKIHLY HCDHRGLPLALISTEGTTAWYAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYY NRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPISNIDPLGLETLKCIKPLHSMGGT GERSGPDIWGNPFYHQYLCVPDGKGDYTCGGQDQRGESKGDGLWGPGKASNDTKEAAG RCDLVETDNSCVENCLKGKFKEVRPRYSVLPDIFTPINLGLFKNCQDWSNDSLETCKM KCSGNNIGRFIRFVFTGVM" gene 733776..734102 /gene="ybfB" /locus_tag="b0702" /gene_synonym="ECK0690; JW0691" /db_xref="EcoGene:EG11522" /db_xref="GeneID:947566" CDS 733776..734102 /gene="ybfB" /locus_tag="b0702" /gene_synonym="ECK0690; JW0691" /codon_start=1 /transl_table=11 /product="putative membrane protein" /protein_id="NP_415230.1" /db_xref="GI:16128677" /db_xref="ASAP:ABE-0002398" /db_xref="UniProtKB/Swiss-Prot:P0AAU5" /db_xref="EcoGene:EG11522" /db_xref="GeneID:947566" /translation="MKYIIFLFRAIWLALSLLILFFSMHRLSLLDSTRDVSELISLMS YGMMVICFPTGIVFFIALIFIGTVSDIIGVRIDSKYIMAIIIWLYFLSGGYIQWFVLS KRIINK" gene 734133..735653 /gene="rhsO" /locus_tag="b0703" /gene_synonym="ECK0691; JW0692; ybfO" /pseudo /db_xref="EcoGene:EG13661" /db_xref="GeneID:946124" CDS 734133..735653 /gene="rhsO" /locus_tag="b0703" /gene_synonym="ECK0691; JW0692; ybfO" /note="pseudogene, Rhs family" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0002402" /db_xref="UniProtKB/Swiss-Prot:P77779" /db_xref="EcoGene:EG13661" /db_xref="GeneID:946124" gene 735650..736219 /gene="ybfC" /locus_tag="b0704" /gene_synonym="ECK0692; JW0693" /db_xref="EcoGene:EG11523" /db_xref="GeneID:947288" CDS 735650..736219 /gene="ybfC" /locus_tag="b0704" /gene_synonym="ECK0692; JW0693" /codon_start=1 /transl_table=11 /product="putative secreted protein" /protein_id="NP_415232.1" /db_xref="GI:16128679" /db_xref="ASAP:ABE-0002404" /db_xref="UniProtKB/Swiss-Prot:P28915" /db_xref="EcoGene:EG11523" /db_xref="GeneID:947288" /translation="MKRVLFFLLMIFVSFGVIADCEIQAKDHDCFTIFAKGTIFSAFP VLNNKAMWRWYQNEDIGEYYWQTELGTCKNNKFTPSGARLLIRVGSLRLNENHAIKGT LQELINTAEKTAFLGDRFRSYIRAGIYQKKSSDPVQLLAVLDNSIMVKYFKDEKPTYA RMTAHLPNKNESYECLIKIQHELIRSEEK" gene 736445..736684 /gene="ybfQ" /locus_tag="b4514" /gene_synonym="ECK4474" /pseudo /db_xref="EcoGene:EG14419" /db_xref="GeneID:1450245" CDS 736445..736684 /gene="ybfQ" /locus_tag="b4514" /gene_synonym="ECK4474" /note="pseudogene, H repeat-associated protein" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0285035" /db_xref="UniProtKB/Swiss-Prot:Q2EEQ8" /db_xref="EcoGene:EG14419" /db_xref="GeneID:1450245" gene 736825..737961 /gene="ybfL" /locus_tag="b0705" /gene_synonym="ECK0694; JW0695" /pseudo /db_xref="EcoGene:EG13417" /db_xref="GeneID:947075" CDS 736825..737961 /gene="ybfL" /locus_tag="b0705" /gene_synonym="ECK0694; JW0695" /note="pseudogene, DDE domain transposase family;putative factor; Not classified; putative receptor protein" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0002407" /db_xref="UniProtKB/Swiss-Prot:P75741" /db_xref="EcoGene:EG13417" /db_xref="GeneID:947075" gene 738092..738853 /gene="ybfD" /locus_tag="b0706" /gene_synonym="ECK0695; JW0696" /db_xref="EcoGene:EG11524" /db_xref="GeneID:945176" CDS 738092..738853 /gene="ybfD" /locus_tag="b0706" /gene_synonym="ECK0695; JW0696" /function="putative enzyme; Not classified" /note="putative DNA ligase" /codon_start=1 /transl_table=11 /product="H repeat-associated putative transposase" /protein_id="NP_415234.1" /db_xref="GI:16128681" /db_xref="ASAP:ABE-0002411" /db_xref="UniProtKB/Swiss-Prot:P28916" /db_xref="EcoGene:EG11524" /db_xref="GeneID:945176" /translation="MELKKLMEHISIIPDYRQAWKVEHKLSDILLLTICAVISGAEGW EDIEDFGETHPDFLKQYGDFENGIPVHDTIARVVSCICPAKFHESFINWMLDYHSSDD KDVIAIDGKIHRHSYDKSRRKGAIHVISAFSTMHSLVIGQIKTDKKSNEITAIPELLN MLDIKGKIIKTDAMGCQKDIAEKIQKQGGDYLFAVKGNQGRLNKAFEEKFPLKELNNP KHDSYAISEKSHGREETRLHIVCDVPDELIDFTFE" gene 739001..739510 /gene="ybgA" /locus_tag="b0707" /gene_synonym="ECK0696; JW0697; tkp" /db_xref="EcoGene:EG11108" /db_xref="GeneID:944853" CDS 739001..739510 /gene="ybgA" /locus_tag="b0707" /gene_synonym="ECK0696; JW0697; tkp" /codon_start=1 /transl_table=11 /product="DUF1722 family protein" /protein_id="NP_415235.1" /db_xref="GI:16128682" /db_xref="ASAP:ABE-0002414" /db_xref="UniProtKB/Swiss-Prot:P24252" /db_xref="EcoGene:EG11108" /db_xref="GeneID:944853" /translation="MNLQRFDDSTLIRIFALHELHRLKEHGLTRGALLDYHSRYKLVF LAHSQPEYRKLGPFVADIHQWQNLDDYYNQYRQRVVVLLSHPANPRDHTNVLMHVQGY FRPHIDSTERQQLAALIDSYRRGEQPLLAPLMRIKHYMALYPDAWLSGQRYFELWPRV INLRHSGVL" gene 739507..740925 /gene="phr" /locus_tag="b0708" /gene_synonym="ECK0697; JW0698; phrB" /db_xref="EcoGene:EG10736" /db_xref="GeneID:947005" CDS 739507..740925 /gene="phr" /locus_tag="b0708" /gene_synonym="ECK0697; JW0698; phrB" /EC_number="4.1.99.3" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006281 - DNA repair" /note="deoxyribodipyrimidine photolyase (photoreactivation)" /codon_start=1 /transl_table=11 /product="deoxyribodipyrimidine photolyase, FAD-binding" /protein_id="NP_415236.1" /db_xref="GI:16128683" /db_xref="ASAP:ABE-0002417" /db_xref="UniProtKB/Swiss-Prot:P00914" /db_xref="EcoGene:EG10736" /db_xref="GeneID:947005" /translation="MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT HNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFY NYQYEVNERARDVEVERALRNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLK RLREGMPECVAAPKVRSSGSIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQN GAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLNEL IWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD AAPYFRIFNPTTQGEKFDHEGEFIRQWLPELRDVPGKVVHEPWKWAQKAGVTLDYPQP IVEHKEARVQTLAAYEAARKGK" repeat_region 740954..741059 /note="RIP66 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(741075..742556) /gene="dtpD" /locus_tag="b0709" /gene_synonym="ECK0698; JW0699; ybgH" /db_xref="EcoGene:EG13304" /db_xref="GeneID:947368" CDS complement(741075..742556) /gene="dtpD" /locus_tag="b0709" /gene_synonym="ECK0698; JW0699; ybgH" /function="transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009063 - cellular amino acid catabolic process" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="dipeptide and tripeptide permease D" /protein_id="NP_415237.1" /db_xref="GI:16128684" /db_xref="ASAP:ABE-0002420" /db_xref="UniProtKB/Swiss-Prot:P75742" /db_xref="EcoGene:EG13304" /db_xref="GeneID:947368" /translation="MNKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYND THAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSF LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGY AQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLV LLVATPALITILFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFF SMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKE SVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAEL FIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINY SINAYIEVFDQITWGALACVGLVLMIWLYQALKFRNRALALES" gene 742827..743570 /gene="ybgI" /locus_tag="b0710" /gene_synonym="ECK0699; JW0700" /db_xref="EcoGene:EG13305" /db_xref="GeneID:945824" CDS 742827..743570 /gene="ybgI" /locus_tag="b0710" /gene_synonym="ECK0699; JW0700" /codon_start=1 /transl_table=11 /product="NIF3 family metal-binding protein" /protein_id="NP_415238.1" /db_xref="GI:16128685" /db_xref="ASAP:ABE-0002424" /db_xref="UniProtKB/Swiss-Prot:P0AFP6" /db_xref="EcoGene:EG13305" /db_xref="GeneID:945824" /translation="MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTA SQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDA HPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDT GPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHAT ERGGIRALSEWLNENTDLDVTFIDIPNPA" gene 743593..744249 /gene="ybgJ" /locus_tag="b0711" /gene_synonym="ECK0700; JW0701" /db_xref="EcoGene:EG13306" /db_xref="GeneID:945311" CDS 743593..744249 /gene="ybgJ" /locus_tag="b0711" /gene_synonym="ECK0700; JW0701" /function="putative enzyme; Not classified" /note="putative carboxylase" /codon_start=1 /transl_table=11 /product="putative allophanate hydrolase, subunit 1" /protein_id="NP_415239.1" /db_xref="GI:16128686" /db_xref="ASAP:ABE-0002426" /db_xref="UniProtKB/Swiss-Prot:P0AAV4" /db_xref="EcoGene:EG13306" /db_xref="GeneID:945311" /translation="MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVV EAIPGMNNITVILRNPESLALDAIERLQRWWEESEALEPESRFIEIPVVYGGAGGPDL AVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPA GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC " gene 744243..745175 /gene="ybgK" /locus_tag="b0712" /gene_synonym="ECK0701; JW0702" /db_xref="EcoGene:EG13307" /db_xref="GeneID:945317" CDS 744243..745175 /gene="ybgK" /locus_tag="b0712" /gene_synonym="ECK0701; JW0702" /function="putative enzyme; Not classified" /note="putative carboxylase" /codon_start=1 /transl_table=11 /product="putative allophanate hydrolase, subunit 2" /protein_id="NP_415240.1" /db_xref="GI:16128687" /db_xref="ASAP:ABE-0002428" /db_xref="UniProtKB/Swiss-Prot:P75745" /db_xref="EcoGene:EG13307" /db_xref="GeneID:945317" /translation="MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLV GNDANAPALEITLGQLTVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTL KRPQHGMRSYLAVAGGIDVPPVMGSCSTDLKVGIGGLEGRLLKDGDRLPIGKSKRDSM EAQGVKQLLWGNRIRALPGPEYHEFDRASQDAFWRSPWQLSSQSNRMGYRLQGQILKR TTDRELLSHGLLPGVVQVPHNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQ PIHFVQCSLEEALKARQDQQRYFEQLAWRLHNEN" gene 745165..745899 /gene="ybgL" /locus_tag="b0713" /gene_synonym="ECK0702; JW0703" /db_xref="EcoGene:EG13308" /db_xref="GeneID:945318" CDS 745165..745899 /gene="ybgL" /locus_tag="b0713" /gene_synonym="ECK0702; JW0703" /function="phenotype; Not classified" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0042493 - response to drug" /note="putative lactam utilization protein" /codon_start=1 /transl_table=11 /product="UPF0271 family protein" /protein_id="NP_415241.1" /db_xref="GI:16128688" /db_xref="ASAP:ABE-0002431" /db_xref="UniProtKB/Swiss-Prot:P75746" /db_xref="EcoGene:EG13308" /db_xref="GeneID:945318" /translation="MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQIMQACV REAIKNGVAIGAHPSFPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQGGVMRH VKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLAGSELIRAGKQYGLTTREEVF ADRGYQADGSLVPRSQSGALIENEEQALAQTLEMVQHGRVKSITGEWATVAAQTVCLH GDGEHALAFARRLRSAFAEKGIVVAA" gene 745935..746726 /gene="nei" /locus_tag="b0714" /gene_synonym="ECK0703; JW0704" /db_xref="EcoGene:EG13237" /db_xref="GeneID:945320" CDS 745935..746726 /gene="nei" /locus_tag="b0714" /gene_synonym="ECK0703; JW0704" /EC_number="3.2.-.-" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006281 - DNA repair" /note="endonuclease VIII and DNA N-glycosylase with an AP lyase activity" /codon_start=1 /transl_table=11 /product="endonuclease VIII and 5-formyluracil/5-hydroxymethyluracil DNA glycosylase" /protein_id="NP_415242.1" /db_xref="GI:16128689" /db_xref="ASAP:ABE-0002433" /db_xref="UniProtKB/Swiss-Prot:P50465" /db_xref="EcoGene:EG13237" /db_xref="GeneID:945320" /translation="MPEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKPYQSQLIGQH VTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKTIL LYSASDIEMLTPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLD QAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDE NKHHGALFRFKVFHRDGEPCERCGSIIEKTTLSSRPFYWCPGCQH" gene complement(746723..747769) /gene="abrB" /locus_tag="b0715" /gene_synonym="ECK0704; JW5097; ybgN" /db_xref="EcoGene:EG13310" /db_xref="GeneID:945321" CDS complement(746723..747769) /gene="abrB" /locus_tag="b0715" /gene_synonym="ECK0704; JW5097; ybgN" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="regulator of aidB expression; inner membrane protein" /protein_id="NP_415243.4" /db_xref="GI:90111163" /db_xref="ASAP:ABE-0002435" /db_xref="UniProtKB/Swiss-Prot:P75747" /db_xref="EcoGene:EG13310" /db_xref="GeneID:945321" /translation="MPVLQWGMLCVLSLLLSIGFLAVHLPAALLLGPMIAGIIFSMRG ITLQLPRSAFLAAQAILGCMIAQNLTGSILTTLAVNWPIVLAILLVTLLSSAIVGWLL VRYSSLPGNTGAWGSSPGGAAAMVAMAQDYGADIRLVAFMQYLRVLFVAGAAVLVTRM MLGDNAEAVNQHIVWFPPVSINLLLTILLAVVAGTVGCLLRLPSGTMLIPMLAGAVLQ SGQLITIELPEWLLAMAYMAIGWRIGLGFDKQILLRALRPLPQILLSIFALLAICAGM AWGLTRFMHIDFMTAYLATSPGGLDTVAVIAAGSNADMALIMAMQTLRLFSILLTGPA IARFISTYAPKRSA" gene complement(747921..748982) /gene="ybgO" /locus_tag="b0716" /gene_synonym="ECK0705; JW5098" /db_xref="EcoGene:EG13311" /db_xref="GeneID:947550" CDS complement(747921..748982) /gene="ybgO" /locus_tag="b0716" /gene_synonym="ECK0705; JW5098" /codon_start=1 /transl_table=11 /product="putative fimbrial protein" /protein_id="NP_415244.4" /db_xref="GI:90111164" /db_xref="ASAP:ABE-0002441" /db_xref="UniProtKB/Swiss-Prot:P75748" /db_xref="EcoGene:EG13311" /db_xref="GeneID:947550" /translation="MSAGKGLLLVICLLFLPLKSAMALNCYFGTSGGAVEKSEAIQPF AVPGNAKPGDKIWESDDIKIPVYCDNNTNGNFESEHVYAWVNPYPGVQDRYYQLGVTY NGVDYDASLGKSRIDTNQCIDSKNIDIYTPEQIIAMGWQNKICSGDPANIHMSRTFLA RMRLYVKIREMPPHDYQSTLSDYIVVQFDGAGSVNEDPTAQNLKYHITGLENIRVLDC SVNFSISPETQVIDFGKFNLLDIRRHTMSKTFSIKTTKSQNDQCTDGFKVSSSFYTEE TLVEEDKALLIGNGLKLRLLDENASPYTFNKYAEYADFTSDMLVYEKTYTAELSSIPG TPIEAGPFDTVVLFKINYN" gene complement(748979..749707) /gene="ybgP" /locus_tag="b0717" /gene_synonym="ECK0706; JW0707" /db_xref="EcoGene:EG13312" /db_xref="GeneID:945110" CDS complement(748979..749707) /gene="ybgP" /locus_tag="b0717" /gene_synonym="ECK0706; JW0707" /function="putative factor; Surface structures" /GO_process="GO:0006457 - protein folding" /note="putative chaperone" /codon_start=1 /transl_table=11 /product="putative periplasmic pilin chaperone" /protein_id="NP_415245.1" /db_xref="GI:16128692" /db_xref="ASAP:ABE-0002443" /db_xref="UniProtKB/Swiss-Prot:P75749" /db_xref="EcoGene:EG13312" /db_xref="GeneID:945110" /translation="MTFIKGLPLMLLTISLGCNAAVQPDRTRIVFNANDKATSLRIEN QSDKLPYLAYSWIENEKGEKSDALLVALPPIQRLEPKATSQVRVVKQASTTQLPGDRE TLFFYNMREIPPAPDKSSDHAILQVAIQSRIKLFWRPAALRKKAGEKVELQLQVSQQG NQLTLKNPTAYYLTIAYLGRNEKGVLPGFKTVMVAPFSTVNTNTGSYSGSQFYLGYMD DYGALRMTTLNCSGQCRLQAVEAK" gene complement(749722..752169) /gene="ybgQ" /locus_tag="b0718" /gene_synonym="ECK0707; JW5099" /db_xref="EcoGene:EG13313" /db_xref="GeneID:946537" CDS complement(749722..752169) /gene="ybgQ" /locus_tag="b0718" /gene_synonym="ECK0707; JW5099" /function="putative membrane; Not classified" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_415246.2" /db_xref="GI:90111165" /db_xref="ASAP:ABE-0002446" /db_xref="UniProtKB/Swiss-Prot:P75750" /db_xref="EcoGene:EG13313" /db_xref="GeneID:946537" /translation="MNIYRLSFVSCLVMAMPCAMAVEFNLNVLDKSMRDRIDISLLKE KGVIAPGEYFVSVAVNNNKISNGQKINWQKKGDKTIPCINDSLVDKFGLKPDIRQSLP QIDRCIDFSSRPEMLFNFDQANQQLNISIPQAWLAWHSENWAPPSTWKEGVAGVLMDY NLFASSYRPQDGSSSTNLNAYGTAGINAGAWRLRSDYQLNKTDSEDNHDQSGGISRTY LFRPLPQLGSKLTLGETDFSSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGIAQT NATVTISQSGRVIYQKKVPPGPFIIDDLNQSVQGTLDVKVTEEDGRVNNFQVSAASTP FLTRQGQVRYKLAAGQPRPSMSHQTENETFFSNEVSWGMLSNTSLYGGLLISDDDYHS AAMGIGQNMLWLGALSFDVTWASSHFDTQQDERGLSYRFNYSKQVDATNSTISLAAYR FSDRHFHSYANYLDHKYNDSDAQDEKQTISLSVGQPITPLNLNLYANLLHQTWWNADA STTANITAGFNVDIGDWRDISISTSFNTTHYEDKDRDNQIYLSISLPFGNGGRVGYDM QNSSHSTIHRMSWNDTLDERNSWGMSAGLQSDRPDNGAQVSGNYQHLSSAGEWDISGT YAASDYSSVSSSWSGSFTATQYGAAFHRRSSTNEPRLMVSTDGVADIPVQGNLDYTNH FGIAVVPLISSYQPSTVAVNMNDLPDGVTVAENVIKETWIEGAIGYKSLASRSGKDVN VIIRNASGQFPPLGADIRQDDSGISVGMVGEEGHAWLSGVAENQLFTVVWGEQSCIIH LPERLEDTTKRLILPCH" gene complement(752229..752795) /gene="ybgD" /locus_tag="b0719" /gene_synonym="ECK0708; JW0709" /db_xref="EcoGene:EG12359" /db_xref="GeneID:945325" CDS complement(752229..752795) /gene="ybgD" /locus_tag="b0719" /gene_synonym="ECK0708; JW0709" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="putative fimbrial-like protein" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_415247.1" /db_xref="GI:16128694" /db_xref="ASAP:ABE-0002448" /db_xref="UniProtKB/Swiss-Prot:P37909" /db_xref="EcoGene:EG12359" /db_xref="GeneID:945325" /translation="MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEI HPEDIDKNIDLGQVTTTHINREHHSNKVAVDIRLINCDLPASDNGSGMPVSKVGVTFD STAKTTGATPLLSNTSAGEATGVGVRLMDKNDGNIVLGSAAPDLDLDASSSEQTLNFF AWMEQIDNAVDVTAGEVTANATYVLDYK" gene complement(753185..754468) /gene="gltA" /locus_tag="b0720" /gene_synonym="ECK0709; gluT; icdB; JW0710" /db_xref="EcoGene:EG10402" /db_xref="GeneID:945323" CDS complement(753185..754468) /gene="gltA" /locus_tag="b0720" /gene_synonym="ECK0709; gluT; icdB; JW0710" /EC_number="2.3.3.1" /function="enzyme; Energy metabolism, carbon: TCA cycle" /GO_process="GO:0009061 - anaerobic respiration; GO:0006099 - tricarboxylic acid cycle" /codon_start=1 /transl_table=11 /product="citrate synthase" /protein_id="NP_415248.1" /db_xref="GI:16128695" /db_xref="ASAP:ABE-0002451" /db_xref="UniProtKB/Swiss-Prot:P0ABH7" /db_xref="EcoGene:EG10402" /db_xref="GeneID:945323" /translation="MADTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFD PGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYD EFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREI AAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILER AMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKML EEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKD DLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGW IAHWSEMHSDGMKIARPRQLYTGYEKRDFKSDIKR" gene 755177..755566 /gene="sdhC" /locus_tag="b0721" /gene_synonym="cybA; ECK0710; JW0711" /db_xref="EcoGene:EG10933" /db_xref="GeneID:945316" CDS 755177..755566 /gene="sdhC" /locus_tag="b0721" /gene_synonym="cybA; ECK0710; JW0711" /function="enzyme; Energy metabolism, carbon: TCA cycle" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009060 - aerobic respiration; GO:0017004 - cytochrome complex assembly; GO:0006099 - tricarboxylic acid cycle" /note="succinate dehydrogenase, cytochrome b556" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, membrane subunit, binds cytochrome b556" /protein_id="NP_415249.1" /db_xref="GI:16128696" /db_xref="ASAP:ABE-0002460" /db_xref="UniProtKB/Swiss-Prot:P69054" /db_xref="EcoGene:EG10933" /db_xref="GeneID:945316" /translation="MIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFVAVGIL LWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEET FEAGKRSAKISFVITVVLSLLAGVLVW" gene 755560..755907 /gene="sdhD" /locus_tag="b0722" /gene_synonym="ECK0711; JW0712" /db_xref="EcoGene:EG10934" /db_xref="GeneID:945322" CDS 755560..755907 /gene="sdhD" /locus_tag="b0722" /gene_synonym="ECK0711; JW0712" /function="enzyme; Energy metabolism, carbon: TCA cycle" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009060 - aerobic respiration; GO:0006099 - tricarboxylic acid cycle" /note="succinate dehydrogenase, hydrophobic subunit" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, membrane subunit, binds cytochrome b556" /protein_id="NP_415250.1" /db_xref="GI:16128697" /db_xref="ASAP:ABE-0002464" /db_xref="UniProtKB/Swiss-Prot:P0AC44" /db_xref="EcoGene:EG10934" /db_xref="GeneID:945322" /translation="MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELT YEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALV VYVIYGFVVVWGV" gene 755907..757673 /gene="sdhA" /locus_tag="b0723" /gene_synonym="ECK0712; JW0713" /db_xref="EcoGene:EG10931" /db_xref="GeneID:945402" CDS 755907..757673 /gene="sdhA" /locus_tag="b0723" /gene_synonym="ECK0712; JW0713" /function="enzyme; Energy metabolism, carbon: TCA cycle" /experiment="N-terminus verified by Edman degradation: PMID 9298646,9600841,9740056" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009060 - aerobic respiration; GO:0006099 - tricarboxylic acid cycle" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, flavoprotein subunit" /protein_id="NP_415251.1" /db_xref="GI:16128698" /db_xref="ASAP:ABE-0002466" /db_xref="UniProtKB/Swiss-Prot:P0AC41" /db_xref="EcoGene:EG10931" /db_xref="GeneID:945402" /translation="MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS HTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHM GLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTI FSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHIN TGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERY APNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELS RTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACV SVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNN RNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNT QRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESM TRRSVNMEPKLRPAFPPKIRTY" gene 757689..758405 /gene="sdhB" /locus_tag="b0724" /gene_synonym="ECK0713; JW0714" /db_xref="EcoGene:EG10932" /db_xref="GeneID:945300" CDS 757689..758405 /gene="sdhB" /locus_tag="b0724" /gene_synonym="ECK0713; JW0714" /function="enzyme; Energy metabolism, carbon: TCA cycle" /experiment="N-terminus verified by Edman degradation: PMID 9298646" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009060 - aerobic respiration; GO:0006099 - tricarboxylic acid cycle" /note="succinate dehydrogenase, iron sulfur protein" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, FeS subunit" /protein_id="NP_415252.1" /db_xref="GI:16128699" /db_xref="ASAP:ABE-0002468" /db_xref="UniProtKB/Swiss-Prot:P07014" /db_xref="EcoGene:EG10932" /db_xref="GeneID:945300" /translation="MRLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKE KDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRD LVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCP SFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPK GLNPTRAIGHIKSMLLQRNA" repeat_region 758409..758526 /note="RIP67 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site" gene 758706..761507 /gene="sucA" /locus_tag="b0726" /gene_synonym="ECK0714; JW0715; lys" /db_xref="EcoGene:EG10979" /db_xref="GeneID:945303" CDS 758706..761507 /gene="sucA" /locus_tag="b0726" /gene_synonym="ECK0714; JW0715; lys" /EC_number="1.2.4.2" /function="enzyme; Energy metabolism, carbon: TCA cycle" /GO_process="GO:0006099 - tricarboxylic acid cycle" /note="2-oxoglutarate dehydrogenase (decarboxylase component)" /codon_start=1 /transl_table=11 /product="2-oxoglutarate decarboxylase, thiamine triphosphate-binding" /protein_id="NP_415254.1" /db_xref="GI:16128701" /db_xref="ASAP:ABE-0002478" /db_xref="UniProtKB/Swiss-Prot:P0AFG3" /db_xref="EcoGene:EG10979" /db_xref="GeneID:945303" /translation="MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRST FQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFR GHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEAL KQTYCGPIGAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLG AKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQ DLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSV RARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQV GFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFI DLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNL YRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPE AVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFF HRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIW EAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQL CAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT FLPAIGEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAM QEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGY MSVHQKQQQDLVNDALNVE" gene 761522..762739 /gene="sucB" /locus_tag="b0727" /gene_synonym="ECK0715; JW0716" /db_xref="EcoGene:EG10980" /db_xref="GeneID:945307" CDS 761522..762739 /gene="sucB" /locus_tag="b0727" /gene_synonym="ECK0715; JW0716" /EC_number="2.3.1.61" /function="enzyme; Energy metabolism, carbon: TCA cycle" /GO_process="GO:0006099 - tricarboxylic acid cycle" /note="2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component)" /codon_start=1 /transl_table=11 /product="dihydrolipoyltranssuccinase" /protein_id="NP_415255.1" /db_xref="GI:16128702" /db_xref="ASAP:ABE-0002480" /db_xref="UniProtKB/Swiss-Prot:P0AFG6" /db_xref="EcoGene:EG10980" /db_xref="GeneID:945307" /translation="MSSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDK VVLEVPASADGILDAVLEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQ QASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKAPAKESAP AAAAPAAQPALAARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRK QYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTP RGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMS TPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIK ELLEDPTRLLLDV" repeat_region 762762..762928 /note="REP68 (repetitive extragenic palindromic) element; contains 4 REP sequences" gene 763014..764180 /gene="sucC" /locus_tag="b0728" /gene_synonym="ECK0716; JW0717" /db_xref="EcoGene:EG10981" /db_xref="GeneID:945312" CDS 763014..764180 /gene="sucC" /locus_tag="b0728" /gene_synonym="ECK0716; JW0717" /EC_number="6.2.1.5" /function="enzyme; Energy metabolism, carbon: TCA cycle" /experiment="N-terminus verified by Edman degradation: PMID 9298646" /GO_process="GO:0006099 - tricarboxylic acid cycle" /codon_start=1 /transl_table=11 /product="succinyl-CoA synthetase, beta subunit" /protein_id="NP_415256.1" /db_xref="GI:16128703" /db_xref="ASAP:ABE-0002483" /db_xref="UniProtKB/Swiss-Prot:P0A836" /db_xref="EcoGene:EG10981" /db_xref="GeneID:945312" /translation="MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWV VKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAAT DIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQG RELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGA DGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIV KLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIG AVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEGK" gene 764180..765049 /gene="sucD" /locus_tag="b0729" /gene_synonym="ECK0717; JW0718" /db_xref="EcoGene:EG10982" /db_xref="GeneID:945314" CDS 764180..765049 /gene="sucD" /locus_tag="b0729" /gene_synonym="ECK0717; JW0718" /EC_number="6.2.1.5" /function="enzyme; Energy metabolism, carbon: TCA cycle" /GO_process="GO:0006099 - tricarboxylic acid cycle" /note="succinyl-CoA synthetase, alpha subunit" /codon_start=1 /transl_table=11 /product="succinyl-CoA synthetase, NAD(P)-binding, alpha subunit" /protein_id="NP_415257.1" /db_xref="GI:16128704" /db_xref="ASAP:ABE-0002485" /db_xref="UniProtKB/Swiss-Prot:P0AGE9" /db_xref="EcoGene:EG10982" /db_xref="GeneID:945314" /translation="MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKG GTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPT LDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYE AVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEA AAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRS LADIGEALKTVLK" gene complement(765153..765875) /gene="mngR" /locus_tag="b0730" /gene_synonym="ECK0718; farR; JW0719; ybgB" /db_xref="EcoGene:EG11109" /db_xref="GeneID:945371" CDS complement(765153..765875) /gene="mngR" /locus_tag="b0730" /gene_synonym="ECK0718; farR; JW0719; ybgB" /function="regulator; Energy metabolism, carbon: TCA cycle" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent; GO:0006350 - transcription; GO:0006099 - tricarboxylic acid cycle" /note="transcriptional regulator of succinylCoA synthetase operon" /codon_start=1 /transl_table=11 /product="transcriptional repressor for the mannosyl-D-glycerate catabolic operon" /protein_id="NP_415258.1" /db_xref="GI:16128705" /db_xref="ASAP:ABE-0002487" /db_xref="UniProtKB/Swiss-Prot:P13669" /db_xref="EcoGene:EG11109" /db_xref="GeneID:945371" /translation="MGHKPLYRQIADRIREQIARGELKPGDALPTESALQTEFGVSRV TVRQALRQLVEQQILESIQGSGTYVKEERVNYDIFQLTSFDEKLSDRHVDTHSEVLIF EVIPADDFLQQQLQITPQDRVWHVKRVRYRKQKPMALEETWMPLALFPDLTWQVMENS KYHFIEEVKKMVIDRSEQEIIPLMPTEEMSRLLNISQTKPILEKVSRGYLVDGRVFEY SRNAFNTDDYKFTLIAQRKSSR" gene 765984..767960 /gene="mngA" /locus_tag="b0731" /gene_synonym="ECK0719; hrsA; JW0720" /db_xref="EcoGene:EG13235" /db_xref="GeneID:945355" CDS 765984..767960 /gene="mngA" /locus_tag="b0731" /gene_synonym="ECK0719; hrsA; JW0720" /EC_number="2.7.1.69" /function="enzyme; Proteins - translation and modification" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006464 - protein modification process; GO:0009266 - response to temperature stimulus" /note="protein modification enzyme, induction of ompC" /codon_start=1 /transl_table=11 /product="fused 2-O-a-mannosyl-D-glycerate specific PTS enzymes: IIA component/IIB component/IIC component" /protein_id="NP_415259.1" /db_xref="GI:16128706" /db_xref="ASAP:ABE-0002493" /db_xref="UniProtKB/Swiss-Prot:P54745" /db_xref="EcoGene:EG13235" /db_xref="GeneID:945355" /translation="MVLFYRAHWRDYKNDQVRIMMNLTTLTHRDALCLNARFTSREEA IHALTQRLAALGKISSTEQFLEEVYRRESLGPTALGEGLAVPHGKTAAVKEAAFAVAT LSEPLQWEGVDGPEAVDLVVLLAIPPNEAGTTHMQLLTALTTRLADDEIRARIQSATT PDELLSALDDKGGTQPSASFSNAPTIVCVTACPAGIAHTYMAAEYLEKAGRKLGVNVY VEKQGANGIEGRLTADQLNSATACIFAAEVAIKESERFNGIPALSVPVAEPIRHAEAL IQQALTLKRSDETRTVQQDTQPVKSVKTELKQALLSGISFAVPLIVAGGTVLAVAVLL SQIFGLQDLFNEENSWLWMYRKLGGGLLGILMVPVLAAYTAYSLADKPALAPGFAAGL AANMIGSGFLGAVVGGLIAGYLMRWVKNHLRLSSKFNGFLTFYLYPVLGTLGAGSLML FVVGEPVAWINNSLTAWLNGLSGSNALLLGAILGFMCSFDLGGPVNKAAYAFCLGAMA NGVYGPYAIFASVKMVSAFTVTASTMLAPRLFKEFEIETGKSTWLLGLAGITEGAIPM AIEDPLRVIGSFVLGSMVTGAIVGAMNIGLSTPGAGIFSLFLLHDNGAGGVMAAIGWF GAALVGAAISTAILLMWRRHAVKHGNYLTDGVMP" gene 767978..770611 /gene="mngB" /locus_tag="b0732" /gene_synonym="ECK0720; JW0721; ybgG" /db_xref="EcoGene:EG13236" /db_xref="GeneID:945359" CDS 767978..770611 /gene="mngB" /locus_tag="b0732" /gene_synonym="ECK0720; JW0721; ybgG" /function="enzyme; Not classified" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="putative sugar hydrolase" /codon_start=1 /transl_table=11 /product="alpha-mannosidase" /protein_id="NP_415260.1" /db_xref="GI:16128707" /db_xref="ASAP:ABE-0002495" /db_xref="UniProtKB/Swiss-Prot:P54746" /db_xref="EcoGene:EG13236" /db_xref="GeneID:945359" /translation="MKAVSRVHITPHMHWDREWYFTTEESRILLVNNMEEILCRLEQD NEYKYYVLDGQTAILEDYFAVKPENKDRVKKQVEAGKLIIGPWYTQTDTTIVSAESIV RNLMYGMRDCLAFGEPMKIGYLPDSFGMSGQLPHIYNGFGITRTMFWRGCSERHGTDK TEFLWQSSDGSEVTAQVLPLGYAIGKYLPADENGLRKRLDSYFDVLEKASVTKEILLP NGHDQMPLQQNIFEVMDKLREIYPQRKFVMSRFEEVFEKIEAQRDNLATLKGEFIDGK YMRVHRTIGSTRMDIKIAHARIENKIVNLLEPLATLAWTLGFEYHHGLLEKMWKEILK NHAHDSIGCCCSDKVHREIVARFELAEDMADNLIRFYMRKIADNMPQSDADKLVLFNL MPWPREEVINTTVRLRASQFNLRDDRGQPVPYFIRHAREIDPGLIDRQIVHYGNYDPF MEFDIQINQIVPSMGYRTLYIEANQPGNVIAAKSDAEGILENAFWQIALNEDGSLQLV DKDSGVRYDRVLQIEESSDDGDEYDYSPAKEEWVITAANAKPQCDIIHEAWQSRAVIR YDMAVPLNLSERSARQSTGRVGVVLVVTLSHNSRRIDVDINLDNQADDHRLRVLVPTP FNTDSVLADTQFGSLTRPVNDSAMNNWQQEGWKEAPVPVWNMLNYVALQEGRNGMAVF SEGLREFEVIGEEKKTFAITLLRGVGLLGKEDLLLRPGRPSGIKMPVPDSQLRGLLSC RLSLLSYTGTPTAAGVAQQARAWLTPVQCYNKIPWDVMKLNKAGFNVPESYSLLKMPP VGCLISALKKAEDRQEVILRLFNPAESATCDATVAFSREVISCSETMMDEHITTEENQ GSNLSGPFLPGQSRTFSYRLA" repeat_region 770675..770773 /note="RIP69 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene 771458..773026 /gene="cydA" /locus_tag="b0733" /gene_synonym="ECK0721; JW0722" /db_xref="EcoGene:EG10173" /db_xref="GeneID:945341" CDS 771458..773026 /gene="cydA" /locus_tag="b0733" /gene_synonym="ECK0721; JW0722" /EC_number="1.9.3.-" /function="enzyme; Energy metabolism, carbon: Electron transport" /experiment="N-terminus verified by Edman degradation: PMID 10428033" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="cytochrome d terminal oxidase, polypeptide subunit I" /codon_start=1 /transl_table=11 /product="cytochrome d terminal oxidase, subunit I" /protein_id="NP_415261.2" /db_xref="GI:90111166" /db_xref="ASAP:ABE-0002499" /db_xref="UniProtKB/Swiss-Prot:P0ABJ9" /db_xref="EcoGene:EG10173" /db_xref="GeneID:945341" /translation="MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSG KQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLM AFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFN FETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKR SFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPD QEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSG STDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRI MVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQP WAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGR YHFEQSSTTTQPAR" gene 773042..774181 /gene="cydB" /locus_tag="b0734" /gene_synonym="ECK0722; JW0723" /db_xref="EcoGene:EG10174" /db_xref="GeneID:945347" CDS 773042..774181 /gene="cydB" /locus_tag="b0734" /gene_synonym="ECK0722; JW0723" /EC_number="1.9.3.-" /function="enzyme; Energy metabolism, carbon: Electron transport" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="cytochrome d terminal oxidase polypeptide subunit II" /codon_start=1 /transl_table=11 /product="cytochrome d terminal oxidase, subunit II" /protein_id="NP_415262.1" /db_xref="GI:16128709" /db_xref="ASAP:ABE-0002501" /db_xref="UniProtKB/Swiss-Prot:P0ABK2" /db_xref="EcoGene:EG10174" /db_xref="GeneID:945347" /translation="MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDT ERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPV GFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGN FFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALA GVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLP LLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQ LTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY" gene 774196..774309 /gene="cydX" /locus_tag="b4515" /gene_synonym="ECK0723; JW0724; ybgT" /db_xref="EcoGene:EG14329" /db_xref="GeneID:1450246" CDS 774196..774309 /gene="cydX" /locus_tag="b4515" /gene_synonym="ECK0723; JW0724; ybgT" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="cytochrome d (bd-I) ubiquinol oxidase subunit X" /protein_id="YP_588444.1" /db_xref="GI:94541102" /db_xref="ASAP:ABE-0285036" /db_xref="UniProtKB/Swiss-Prot:P56100" /db_xref="EcoGene:EG14329" /db_xref="GeneID:1450246" /translation="MWYFAWILGTLLACSFGVITALALEHVESGKAGQEDI" gene 774309..774602 /gene="ybgE" /locus_tag="b0735" /gene_synonym="ECK0724; JW0725" /db_xref="EcoGene:EG12395" /db_xref="GeneID:945326" CDS 774309..774602 /gene="ybgE" /locus_tag="b0735" /gene_synonym="ECK0724; JW0725" /codon_start=1 /transl_table=11 /product="putative inner membrane protein in cydABX-ybgE operon" /protein_id="NP_415263.1" /db_xref="GI:16128710" /db_xref="ASAP:ABE-0002505" /db_xref="UniProtKB/Swiss-Prot:P0AAV0" /db_xref="EcoGene:EG12395" /db_xref="GeneID:945326" /translation="MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTS ELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIVGLIFFFF" gene 774752..775156 /gene="ybgC" /locus_tag="b0736" /gene_synonym="ECK0725; JW0726" /db_xref="EcoGene:EG11110" /db_xref="GeneID:948907" CDS 774752..775156 /gene="ybgC" /locus_tag="b0736" /gene_synonym="ECK0725; JW0726" /function="enzyme; Fatty acid and phosphatidic acid biosynthesis" /codon_start=1 /transl_table=11 /product="acyl-CoA thioester hydrolase" /protein_id="NP_415264.1" /db_xref="GI:16128711" /db_xref="ASAP:ABE-0002508" /db_xref="UniProtKB/Swiss-Prot:P0A8Z3" /db_xref="EcoGene:EG11110" /db_xref="GeneID:948907" /translation="MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHH FSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENT LLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ" gene 775153..775845 /gene="tolQ" /locus_tag="b0737" /gene_synonym="ECK0726; fii; JW0727; tolP" /db_xref="EcoGene:EG11010" /db_xref="GeneID:948900" CDS 775153..775845 /gene="tolQ" /locus_tag="b0737" /gene_synonym="ECK0726; fii; JW0727; tolP" /function="membrane; Colicin-related functions" /experiment="N-terminus verified by Edman degradation: PMID 8300535" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="inner membrane protein, membrane-spanning, maintains integrity of cell envelope; tolerance to group A colicins" /codon_start=1 /transl_table=11 /product="membrane spanning protein in TolA-TolQ-TolR complex" /protein_id="NP_415265.1" /db_xref="GI:16128712" /db_xref="ASAP:ABE-0002511" /db_xref="UniProtKB/Swiss-Prot:P0ABU9" /db_xref="EcoGene:EG11010" /db_xref="GeneID:948900" /translation="MTDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNA AAREAEAFEDKFWSGIELSRLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPE AVVEGASRAMRISMNRELENLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVK QATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILH RQAFTVSESNKG" gene 775849..776277 /gene="tolR" /locus_tag="b0738" /gene_synonym="ECK0727; JW0728" /db_xref="EcoGene:EG11011" /db_xref="GeneID:945328" CDS 775849..776277 /gene="tolR" /locus_tag="b0738" /gene_synonym="ECK0727; JW0728" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative inner membrane protein, involved in the tonB-independent uptake of group A colicins" /codon_start=1 /transl_table=11 /product="membrane spanning protein in TolA-TolQ-TolR complex" /protein_id="NP_415266.1" /db_xref="GI:16128713" /db_xref="ASAP:ABE-0002513" /db_xref="UniProtKB/Swiss-Prot:P0ABV6" /db_xref="EcoGene:EG11011" /db_xref="GeneID:945328" /translation="MARARGRGRRDLKSEINIVPLLDVLLVLLLIFMATAPIITQSVE VDLPDATESQAVSSNDNPPVIVEVSGIGQYTVVVEKDRLERLPPEQVVAEVSSRFKAN PKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMTQPI" gene 776342..777607 /gene="tolA" /locus_tag="b0739" /gene_synonym="cim; ECK0728; excC; JW0729; lky" /db_xref="EcoGene:EG11007" /db_xref="GeneID:946625" CDS 776342..777607 /gene="tolA" /locus_tag="b0739" /gene_synonym="cim; ECK0728; excC; JW0729; lky" /function="membrane; Colicin-related functions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="membrane spanning protein, required for outer membrane integrity" /codon_start=1 /transl_table=11 /product="membrane anchored protein in TolA-TolQ-TolR complex" /protein_id="NP_415267.1" /db_xref="GI:16128714" /db_xref="ASAP:ABE-0002515" /db_xref="UniProtKB/Swiss-Prot:P19934" /db_xref="EcoGene:EG11007" /db_xref="GeneID:946625" /translation="MSKATEQNDKLKRAIIISAVLHVILFAALIWSSFDENIEASAGG GGGSSIDAVMVDSGAVVEQYKRMQSQESSAKRSDEQRKMKEQQAAEELREKQAAEQER LKQLEKERLAAQEQKKQAEEAAKQAELKQKQAEEAAAKAAADAKAKAEADAKAAEEAA KKAAADAKKKAEAEAAKAAAEAQKKAEAAAAALKKKAEAAEAAAAEARKKAATEAAEK AKAEAEKKAAAEKAAADKKAAAEKAAADKKAAEKAAAEKAAADKKAAAEKAAADKKAA AAKAAAEKAAAAKAAAEADDIFGELSSGKNAPKTGGGAKGNNASPAGSGNTKNNGASG ADINNYAGQIKSAIESKFYDASSYAGKTCTLRIKLAPDGMLLDIKPEGGDPALCQAAL AAAKLAKIPKPPSQAVYEVFKNAPLDFKP" gene 777740..779032 /gene="tolB" /locus_tag="b0740" /gene_synonym="ECK0729; JW5100" /db_xref="EcoGene:EG11008" /db_xref="GeneID:945429" CDS 777740..779032 /gene="tolB" /locus_tag="b0740" /gene_synonym="ECK0729; JW5100" /function="factor; Colicin-related functions" /GO_component="GO:0042597 - periplasmic space" /note="periplasmic protein involved in the tonb-independent uptake of group A colicins" /codon_start=1 /transl_table=11 /product="periplasmic protein" /protein_id="NP_415268.1" /db_xref="GI:16128715" /db_xref="ASAP:ABE-0002517" /db_xref="UniProtKB/Swiss-Prot:P0A855" /db_xref="EcoGene:EG11008" /db_xref="GeneID:945429" /translation="MKQALRVAFGFLILWASVLHAEVRIVIDSGVDSGRPIGVVPFQW AGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPAAWSALGIDAVVVG QVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT FESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQN QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYS SSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL" gene 779067..779588 /gene="pal" /locus_tag="b0741" /gene_synonym="ECK0730; excC; JW0731" /db_xref="EcoGene:EG10684" /db_xref="GeneID:945004" CDS 779067..779588 /gene="pal" /locus_tag="b0741" /gene_synonym="ECK0730; excC; JW0731" /function="membrane; Macromolecule synthesis, modification: Lipoprotein" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="peptidoglycan-associated lipoprotein" /codon_start=1 /transl_table=11 /product="peptidoglycan-associated outer membrane lipoprotein" /protein_id="NP_415269.1" /db_xref="GI:16128716" /db_xref="ASAP:ABE-0002521" /db_xref="UniProtKB/Swiss-Prot:P0A912" /db_xref="EcoGene:EG10684" /db_xref="GeneID:945004" /translation="MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMD ANGGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYK VTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE AAYSKNRRAVLVY" gene 779598..780389 /gene="ybgF" /locus_tag="b0742" /gene_synonym="ECK0731; JW0732" /db_xref="EcoGene:EG12854" /db_xref="GeneID:947227" CDS 779598..780389 /gene="ybgF" /locus_tag="b0742" /gene_synonym="ECK0731; JW0732" /GO_component="GO:0042597 - periplasmic space" /codon_start=1 /transl_table=11 /product="periplasmic TolA-binding protein" /protein_id="NP_415270.1" /db_xref="GI:16128717" /db_xref="ASAP:ABE-0002523" /db_xref="UniProtKB/Swiss-Prot:P45955" /db_xref="EcoGene:EG12854" /db_xref="GeneID:947227" /translation="MSSNFRHQLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQ LERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLS SGGAAAQSTSGDQSGAAASTTPTADAGTANAGAPVKSGNANTDYNAAIALVQDKSRQD DAMVAFQNFIKNYPDSTYLPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD AMFKVGVIMQDKGDTAKAKAVYQQVISKYPGTDGAKQAQKRLNAM" gene 780554..780629 /gene="lysT" /locus_tag="b0743" /gene_synonym="ECK0732; JWR0018; lysTalpha; sua; supG; supL" /db_xref="EcoGene:EG30055" /db_xref="GeneID:945336" tRNA 780554..780629 /gene="lysT" /locus_tag="b0743" /gene_synonym="ECK0732; JWR0018; lysTalpha; sua; supG; supL" /product="tRNA-Lys" /note="anticodon: UUU" /db_xref="ASAP:ABE-0002525" /db_xref="EcoGene:EG30055" /db_xref="GeneID:945336" gene 780765..780840 /gene="valT" /locus_tag="b0744" /gene_synonym="ECK0733; JWR0019" /db_xref="EcoGene:EG30109" /db_xref="GeneID:945331" tRNA 780765..780840 /gene="valT" /locus_tag="b0744" /gene_synonym="ECK0733; JWR0019" /product="tRNA-Val" /note="anticodon: UAC" /db_xref="ASAP:ABE-0002527" /db_xref="EcoGene:EG30109" /db_xref="GeneID:945331" gene 780843..780918 /gene="lysW" /locus_tag="b0745" /gene_synonym="ECK0734; JWR0020; lysTbeta; su" /db_xref="EcoGene:EG30057" /db_xref="GeneID:945338" tRNA 780843..780918 /gene="lysW" /locus_tag="b0745" /gene_synonym="ECK0734; JWR0020; lysTbeta; su" /product="tRNA-Lys" /note="anticodon: UUU" /db_xref="ASAP:ABE-0002529" /db_xref="EcoGene:EG30057" /db_xref="GeneID:945338" gene 781068..781143 /gene="valZ" /locus_tag="b0746" /gene_synonym="ECK0735; JWR0021" /db_xref="EcoGene:EG31125" /db_xref="GeneID:945345" tRNA 781068..781143 /gene="valZ" /locus_tag="b0746" /gene_synonym="ECK0735; JWR0021" /product="tRNA-Val" /note="anticodon: UAC" /db_xref="ASAP:ABE-0002531" /db_xref="EcoGene:EG31125" /db_xref="GeneID:945345" gene 781147..781222 /gene="lysY" /locus_tag="b0747" /gene_synonym="ECK0736; JWR0022" /db_xref="EcoGene:EG31123" /db_xref="GeneID:945342" tRNA 781147..781222 /gene="lysY" /locus_tag="b0747" /gene_synonym="ECK0736; JWR0022" /product="tRNA-Lys" /note="anticodon: UUU" /db_xref="ASAP:ABE-0002533" /db_xref="EcoGene:EG31123" /db_xref="GeneID:945342" gene 781369..781444 /gene="lysZ" /locus_tag="b0748" /gene_synonym="ECK0737; JWR0023" /db_xref="EcoGene:EG31124" /db_xref="GeneID:945352" tRNA 781369..781444 /gene="lysZ" /locus_tag="b0748" /gene_synonym="ECK0737; JWR0023" /product="tRNA-Lys" /note="anticodon: UUU" /db_xref="ASAP:ABE-0002535" /db_xref="EcoGene:EG31124" /db_xref="GeneID:945352" gene 781577..781652 /gene="lysQ" /locus_tag="b0749" /gene_synonym="ECK0738; JWR0024" /db_xref="EcoGene:EG31122" /db_xref="GeneID:945353" tRNA 781577..781652 /gene="lysQ" /locus_tag="b0749" /gene_synonym="ECK0738; JWR0024" /product="tRNA-Lys" /note="anticodon: UUU" /db_xref="ASAP:ABE-0002537" /db_xref="EcoGene:EG31122" /db_xref="GeneID:945353" gene 782085..783128 /gene="nadA" /locus_tag="b0750" /gene_synonym="ECK0739; JW0733; nicA" /db_xref="EcoGene:EG10630" /db_xref="GeneID:945351" CDS 782085..783128 /gene="nadA" /locus_tag="b0750" /gene_synonym="ECK0739; JW0733; nicA" /function="enzyme; Biosynthesis of cofactors, carriers: Pyridine nucleotide" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009435 - NAD biosynthetic process" /note="quinolinate synthetase, A protein" /codon_start=1 /transl_table=11 /product="quinolinate synthase, subunit A" /protein_id="NP_415271.1" /db_xref="GI:16128718" /db_xref="ASAP:ABE-0002541" /db_xref="UniProtKB/Swiss-Prot:P11458" /db_xref="EcoGene:EG10630" /db_xref="GeneID:945351" /translation="MSVMFDPDTAIYPFPPKPTPLSIDEKAYYREKIKRLLKERNAVM VAHYYTDPEIQQLAEETGGCISDSLEMARFGAKHPASTLLVAGVRFMGETAKILSPEK TILMPTLQAECSLDLGCPVEEFNAFCDAHPDRTVVVYANTSAAVKARADWVVTSSIAV ELIDHLDSLGEKIIWAPDKHLGRYVQKQTGGDILCWQGACIVHDEFKTQALTRLQEEY PDAAILVHPESPQAIVDMADAVGSTSQLIAAAKTLPHQRLIVATDRGIFYKMQQAVPD KELLEAPTAGEGATCRSCAHCPWMAMNGLQAIAEALEQEGSNHEVHVDERLRERALVP LNRMLDFAATLRG" gene 783166..783885 /gene="pnuC" /locus_tag="b0751" /gene_synonym="ECK0740; JW0734" /db_xref="EcoGene:EG11700" /db_xref="GeneID:945350" CDS 783166..783885 /gene="pnuC" /locus_tag="b0751" /gene_synonym="ECK0740; JW0734" /function="transport; Transport of small molecules: Nucleosides, purines, pyrimidines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /note="required for NMN transport" /codon_start=1 /transl_table=11 /product="nicotinamide riboside transporter" /protein_id="NP_415272.1" /db_xref="GI:16128719" /db_xref="ASAP:ABE-0002547" /db_xref="UniProtKB/Swiss-Prot:P0AFK2" /db_xref="EcoGene:EG11700" /db_xref="GeneID:945350" /translation="MDFFSVQNILVHIPIGAGGYDLSWIEAVGTIAGLLCIGLASLEK ISNYFFGLINVTLFGIIFFQIQLYASLLLQVFFFAANIYGWYAWSRQTSQNEAELKIR WLPLPKALSWLAVCVVSIGLMTVFINPVFAFLTRVAVMIMQALGLQVVMPELQPDAFP FWDSCMMVLSIVAMILMTRKYVENWLLWVIINVISVVIFALQGVYAMSLEYIILTFIA LNGSRMWINSARERGSRALSH" gene complement(783882..784823) /gene="zitB" /locus_tag="b0752" /gene_synonym="ECK0741; JW0735; ybgR" /db_xref="EcoGene:EG13662" /db_xref="GeneID:945348" CDS complement(783882..784823) /gene="zitB" /locus_tag="b0752" /gene_synonym="ECK0741; JW0735; ybgR" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport system permease protein" /codon_start=1 /transl_table=11 /product="zinc efflux system" /protein_id="NP_415273.1" /db_xref="GI:16128720" /db_xref="ASAP:ABE-0002549" /db_xref="UniProtKB/Swiss-Prot:P75757" /db_xref="EcoGene:EG13662" /db_xref="GeneID:945348" /translation="MAHSHSHTSSHLPEDNNARRLLYAFGVTAGFMLVEVVGGFLSGS LALLADAGHMLTDTAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVIT ILIVWEAIERFRTPRPVEGGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHV LGDLLGSVGAIIAALIIIWTGWTPADPILSILVSLLVLRSAWRLLKDSVNELLEGAPV SLDIAELKRRMCREIPEVRNVHHVHVWMVGEKPVMTLHVQVIPPHDHDALLDQIQHYL MDHYQIEHATIQMEYQPCHGPDCHLNEGVSGHSHHHH" gene complement(784937..785317) /gene="ybgS" /locus_tag="b0753" /gene_synonym="ECK0742; JW0736" /db_xref="EcoGene:EG13663" /db_xref="GeneID:945356" CDS complement(784937..785317) /gene="ybgS" /locus_tag="b0753" /gene_synonym="ECK0742; JW0736" /function="putative regulator; Not classified" /note="putative homeobox protein" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_415274.1" /db_xref="GI:16128721" /db_xref="ASAP:ABE-0002553" /db_xref="UniProtKB/Swiss-Prot:P0AAV6" /db_xref="EcoGene:EG13663" /db_xref="GeneID:945356" /translation="MKMTKLATLFLTATLSLASGAALAADSGAQTNNGQANAAADAGQ VAPDARENVAPNNVDNNGVNTGSGGTMLHSDGSSMNNDGMTKDEEHKNTMCKDGRCPD INKKVQTGDGINNDVDTKTDGTTQ" gene 785633..786685 /gene="aroG" /locus_tag="b0754" /gene_synonym="ECK0743; JW0737" /db_xref="EcoGene:EG10079" /db_xref="GeneID:945605" CDS 785633..786685 /gene="aroG" /locus_tag="b0754" /gene_synonym="ECK0743; JW0737" /EC_number="2.5.1.54" /function="enzyme; Amino acid biosynthesis: Phenylalanine" /experiment="N-terminus verified by Edman degradation: PMID 9298646,9740056" /GO_process="GO:0009094 - L-phenylalanine biosynthetic process" /note="3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, phenylalanine repressible)" /codon_start=1 /transl_table=11 /product="3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, phenylalanine repressible" /protein_id="NP_415275.1" /db_xref="GI:16128722" /db_xref="ASAP:ABE-0002560" /db_xref="UniProtKB/Swiss-Prot:P0AB91" /db_xref="EcoGene:EG10079" /db_xref="GeneID:945605" /translation="MNYQNDDLRIKEIKELLPPVALLEKFPATENAANTVAHARKAIH KILKGNDDRLLVVIGPCSIHDPVAAKEYATRLLALREELKDELEIVMRVYFEKPRTTV GWKGLINDPHMDNSFQINDGLRIARKLLLDINDSGLPAAGEFLDMITPQYLADLMSWG AIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHS AIVNTSGNGDCHIILRGGKEPNYSAKHVAEVKEGLNKAGLPAQVMIDFSHANSSKQFK KQMDVCADVCQQIAGGEKAIIGVMVESHLVEGNQSLESGEPLAYGKSITDACIGWEDT DALLRQLANAVKARRG" repeat_region 786735..786769 /note="REP70 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(786843..787595) /gene="gpmA" /locus_tag="b0755" /gene_synonym="ECK0744; gpm; JW0738" /db_xref="EcoGene:EG11699" /db_xref="GeneID:945068" CDS complement(786843..787595) /gene="gpmA" /locus_tag="b0755" /gene_synonym="ECK0744; gpm; JW0738" /function="enzyme; Energy metabolism, carbon: Glycolysis" /GO_process="GO:0006094 - gluconeogenesis; GO:0006096 - glycolysis" /codon_start=1 /transl_table=11 /product="phosphoglyceromutase 1" /protein_id="NP_415276.1" /db_xref="GI:16128723" /db_xref="ASAP:ABE-0002563" /db_xref="UniProtKB/Swiss-Prot:P62707" /db_xref="EcoGene:EG11699" /db_xref="GeneID:945068" /translation="MAVTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKL LKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAE TAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDR VIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLVYEF DENFKPLKRYYLGNADEIAAKAAAVANQGKAK" gene complement(787797..788837) /gene="galM" /locus_tag="b0756" /gene_synonym="ECK0745; JW0739" /db_xref="EcoGene:EG11698" /db_xref="GeneID:944943" CDS complement(787797..788837) /gene="galM" /locus_tag="b0756" /gene_synonym="ECK0745; JW0739" /EC_number="5.1.3.3" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="aldose 1-epimerase; type-1 mutarotase; galactose mutarotase" /protein_id="NP_415277.1" /db_xref="GI:16128724" /db_xref="ASAP:ABE-0002566" /db_xref="UniProtKB/Swiss-Prot:P0A9C3" /db_xref="EcoGene:EG11698" /db_xref="GeneID:944943" /translation="MLNETPALAPDGQPYRLLTLRNNAGMVVTLMDWGATLLSARIPL SDGSVREALLGCASPECYQDQAAFLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQ LHGGPEGFDKRRWQIVNQNDRQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITY RATVDKPCPVNMTNHVYFNLDGEQSDVRNHKLQILADEYLPVDEGGIPHDGLKSVAGT SFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQAKGDGKKVAAHVWSADEKLQLKVYT TAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPNHPEWPQPDCFLRPGEE YSSLTEYQFIAE" gene complement(788831..789979) /gene="galK" /locus_tag="b0757" /gene_synonym="ECK0746; galA; JW0740" /db_xref="EcoGene:EG10363" /db_xref="GeneID:945358" CDS complement(788831..789979) /gene="galK" /locus_tag="b0757" /gene_synonym="ECK0746; galA; JW0740" /EC_number="2.7.1.6" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0009242 - colanic acid biosynthetic process; GO:0006012 - galactose metabolic process; GO:0009269 - response to desiccation" /codon_start=1 /transl_table=11 /product="galactokinase" /protein_id="NP_415278.1" /db_xref="GI:16128725" /db_xref="ASAP:ABE-0002568" /db_xref="UniProtKB/Swiss-Prot:P0A6T3" /db_xref="EcoGene:EG10363" /db_xref="GeneID:945358" /translation="MSLKEKTQSLFANAFGYPATHTIQAPGRVNLIGEHTDYNDGFVL PCAIDYQTVISCAPRDDRKVRVMAADYENQLDEFSLDAPIVAHENYQWANYVRGVVKH LQLRNNSFGGVDMVISGNVPQGAGLSSSASLEVAVGTVLQQLYHLPLDGAQIALNGQE AENQFVGCNCGIMDQLISALGKKDHALLIDCRSLGTKAVSMPKGVAVVIINSNFKRTL VGSEYNTRREQCETGARFFQQPALRDVTIEEFNAVAHELDPIVAKRVRHILTENARTV EAASALEQGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDKGGVRMTGG GFGGCIVALIPEELVPAVQQAVAEQYEAKTGIKETFYVCKPSQGAGQC" gene complement(789983..791029) /gene="galT" /locus_tag="b0758" /gene_synonym="ECK0747; galB; JW0741" /db_xref="EcoGene:EG10366" /db_xref="GeneID:945357" CDS complement(789983..791029) /gene="galT" /locus_tag="b0758" /gene_synonym="ECK0747; galB; JW0741" /EC_number="2.7.7.10" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0009242 - colanic acid biosynthetic process; GO:0006012 - galactose metabolic process; GO:0009269 - response to desiccation" /codon_start=1 /transl_table=11 /product="galactose-1-phosphate uridylyltransferase" /protein_id="NP_415279.1" /db_xref="GI:16128726" /db_xref="ASAP:ABE-0002573" /db_xref="UniProtKB/Swiss-Prot:P09148" /db_xref="EcoGene:EG10366" /db_xref="GeneID:945357" /translation="MTQFNPVDHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQV LPAHDPDCFLCAGNVRVTGDKNPDYTGTYVFTNDFAALMSDTPDAPESHDPLMRCQSA RGTSRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKTYPWVQVFENKGAAMGC SNPHPHGQIWANSFLPNEAEREDRLQKEYFAEQKSPMLVDYVQRELADGSRTVVETEH WLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPY SMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAER LRAVSDIHFRESGV" gene complement(791039..792055) /gene="galE" /locus_tag="b0759" /gene_synonym="ECK0748; galD; JW0742" /db_xref="EcoGene:EG10362" /db_xref="GeneID:945354" CDS complement(791039..792055) /gene="galE" /locus_tag="b0759" /gene_synonym="ECK0748; galD; JW0742" /EC_number="5.1.3.2" /function="enzyme; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 4613352,9119048" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0009242 - colanic acid biosynthetic process; GO:0006012 - galactose metabolic process; GO:0009435 - NAD biosynthetic process; GO:0009269 - response to desiccation" /codon_start=1 /transl_table=11 /product="UDP-galactose-4-epimerase" /protein_id="NP_415280.3" /db_xref="GI:49176045" /db_xref="ASAP:ABE-0002575" /db_xref="UniProtKB/Swiss-Prot:P09147" /db_xref="EcoGene:EG10362" /db_xref="GeneID:945354" /translation="MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVI ERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVN GTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL TDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIF GNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAF SKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQ GYPD" repeat_region 792264..792297 /note="REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(792316..793788) /gene="modF" /locus_tag="b0760" /gene_synonym="chlD; ECK0749; JW0743; phrA" /db_xref="EcoGene:EG11677" /db_xref="GeneID:945368" CDS complement(792316..793788) /gene="modF" /locus_tag="b0760" /gene_synonym="chlD; ECK0749; JW0743; phrA" /function="transport; Transport of small molecules: Anions" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0042888 - molybdenum ion transmembrane transporter activity" /GO_process="GO:0006777 - Mo-molybdopterin cofactor biosynthetic process" /note="ATP-binding component of molybdate transport system" /codon_start=1 /transl_table=11 /product="molybdate ABC transporter ATPase" /protein_id="NP_415281.1" /db_xref="GI:16128728" /db_xref="ASAP:ABE-0002582" /db_xref="UniProtKB/Swiss-Prot:P31060" /db_xref="EcoGene:EG11677" /db_xref="GeneID:945368" /translation="MSSLQILQGTFRLSDTKTLQLPQLTLNAGDSWAFVGSNGSGKSA LARALAGELPLLKGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLGPGEDDTGRTT AEIIQDEVKDAPRCMQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILD EPFDGLDVASRQQLAERLASLHQSGITLVLVLNRFDEIPEFVQFAGVLADCTLAETGA KEELLQQALVAQLAHSEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPIL NNLSWQVNPGEHWQIVGPNGAGKSTLLSLVTGDHPQGYSNDLTLFGRRRGSGETIWDI KKHIGYVSSSLHLDYRVSTTVRNVILSGYFDSIGIYQAVSDRQQKLVQQWLDILGIDK RTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLIRRFVDVLISE GETQLLFVSHHAEDAPACITHRLEFVPDGGLYRYVLTKIY" gene complement(793856..794644) /gene="modE" /locus_tag="b0761" /gene_synonym="chlD; ECK0750; JW0744; modR" /db_xref="EcoGene:EG13227" /db_xref="GeneID:945366" CDS complement(793856..794644) /gene="modE" /locus_tag="b0761" /gene_synonym="chlD; ECK0750; JW0744; modR" /function="regulator; Transport of small molecules: Anions" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006777 - Mo-molybdopterin cofactor biosynthetic process; GO:0006350 - transcription" /note="molybdate uptake regulatory protein" /codon_start=1 /transl_table=11 /product="transcriptional repressor for the molybdenum transport operon modABC" /protein_id="NP_415282.1" /db_xref="GI:16128729" /db_xref="ASAP:ABE-0002585" /db_xref="UniProtKB/Swiss-Prot:P0A9G8" /db_xref="EcoGene:EG13227" /db_xref="GeneID:945366" /translation="MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGIS YKSAWDAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYDLLAQIQQKAFDV LSDDDALPLNSLLAAISRFSLQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKV AITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCE VLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIATLC" gene 794773..794922 /gene="acrZ" /locus_tag="b0762" /gene_synonym="ECK0751; JW5102; ybhT" /db_xref="EcoGene:EG14328" /db_xref="GeneID:945365" CDS 794773..794922 /gene="acrZ" /locus_tag="b0762" /gene_synonym="ECK0751; JW5102; ybhT" /codon_start=1 /transl_table=11 /product="AcrAB-TolC efflux pump accessory protein, membrane-associated" /protein_id="NP_415283.1" /db_xref="GI:16128730" /db_xref="ASAP:ABE-0002595" /db_xref="UniProtKB/Swiss-Prot:P0AAW9" /db_xref="EcoGene:EG14328" /db_xref="GeneID:945365" /translation="MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQ PGQNH" gene 795089..795862 /gene="modA" /locus_tag="b0763" /gene_synonym="ECK0752; JW0746" /db_xref="EcoGene:EG12427" /db_xref="GeneID:945364" CDS 795089..795862 /gene="modA" /locus_tag="b0763" /gene_synonym="ECK0752; JW0746" /function="transport; Transport of small molecules: Anions" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006777 - Mo-molybdopterin cofactor biosynthetic process" /note="molybdate-binding periplasmic protein; permease; periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="molybdate ABC transporter periplasmic binding protein; chlorate resistance protein" /protein_id="NP_415284.1" /db_xref="GI:16128731" /db_xref="ASAP:ABE-0002601" /db_xref="UniProtKB/Swiss-Prot:P37329" /db_xref="EcoGene:EG12427" /db_xref="GeneID:945364" /translation="MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDI ATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQ TLLGNSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKL GAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKV EYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTIK" gene 795862..796551 /gene="modB" /locus_tag="b0764" /gene_synonym="chlJ; ECK0753; JW0747" /db_xref="EcoGene:EG10002" /db_xref="GeneID:945361" CDS 795862..796551 /gene="modB" /locus_tag="b0764" /gene_synonym="chlJ; ECK0753; JW0747" /function="transport; Transport of small molecules: Anions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="molybdate transport permease protein; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="molybdate ABC transporter permease; chlorate resistance protein" /protein_id="NP_415285.1" /db_xref="GI:16128732" /db_xref="ASAP:ABE-0002603" /db_xref="UniProtKB/Swiss-Prot:P0AF01" /db_xref="EcoGene:EG10002" /db_xref="GeneID:945361" /translation="MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGK ALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVM SFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARS LGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEW LARISRERAGR" gene 796554..797612 /gene="modC" /locus_tag="b0765" /gene_synonym="chlD; ECK0754; JW0748; narD" /db_xref="EcoGene:EG10152" /db_xref="GeneID:945362" CDS 796554..797612 /gene="modC" /locus_tag="b0765" /gene_synonym="chlD; ECK0754; JW0748; narD" /EC_number="3.6.3.29" /function="transport; Transport of small molecules: Anions" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006777 - Mo-molybdopterin cofactor biosynthetic process" /note="ATP-binding component of molybdate transport" /codon_start=1 /transl_table=11 /product="molybdate ABC transporter ATPase; chlorate resistance protein" /protein_id="NP_415286.1" /db_xref="GI:16128733" /db_xref="ASAP:ABE-0002605" /db_xref="UniProtKB/Swiss-Prot:P09833" /db_xref="EcoGene:EG10152" /db_xref="GeneID:945362" /translation="MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAI SGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMS KSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLD IPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWG SSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQ ASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELA IKPGLWLYAQIKSVSITA" gene complement(797613..798431) /gene="ybhA" /locus_tag="b0766" /gene_synonym="ECK0755; JW0749; modD" /db_xref="EcoGene:EG11239" /db_xref="GeneID:945372" CDS complement(797613..798431) /gene="ybhA" /locus_tag="b0766" /gene_synonym="ECK0755; JW0749; modD" /function="putative enzyme; Not classified" /note="putative phosphatase" /codon_start=1 /transl_table=11 /product="pyridoxal phosphate (PLP) phosphatase" /protein_id="NP_415287.1" /db_xref="GI:16128734" /db_xref="ASAP:ABE-0002607" /db_xref="UniProtKB/Swiss-Prot:P21829" /db_xref="EcoGene:EG11239" /db_xref="GeneID:945372" /translation="MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTG RHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVIKALQLIEMLNEHHI HGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFAL THDDLPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENV VAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI" gene 798586..799581 /gene="pgl" /locus_tag="b0767" /gene_synonym="blu; ECK0756; JW0750; ybhE" /db_xref="EcoGene:EG13231" /db_xref="GeneID:946398" CDS 798586..799581 /gene="pgl" /locus_tag="b0767" /gene_synonym="blu; ECK0756; JW0750; ybhE" /EC_number="3.1.1.31" /function="orf; Not classified" /note="putative isomerase" /codon_start=1 /transl_table=11 /product="6-phosphogluconolactonase" /protein_id="NP_415288.1" /db_xref="GI:16128735" /db_xref="ASAP:ABE-0002611" /db_xref="UniProtKB/Swiss-Prot:P52697" /db_xref="EcoGene:EG13231" /db_xref="GeneID:946398" /translation="MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVS PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYN AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ PRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH" gene complement(799622..800575) /gene="ybhD" /locus_tag="b0768" /gene_synonym="ECK0757; JW5896" /db_xref="EcoGene:EG13230" /db_xref="GeneID:944869" CDS complement(799622..800575) /gene="ybhD" /locus_tag="b0768" /gene_synonym="ECK0757; JW5896" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator" /protein_id="NP_415289.4" /db_xref="GI:145698233" /db_xref="ASAP:ABE-0002613" /db_xref="UniProtKB/Swiss-Prot:P52696" /db_xref="EcoGene:EG13230" /db_xref="GeneID:944869" /translation="MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEED LHVQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPT AVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFT PLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLD WFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD AVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG" gene 800759..801811 /gene="ybhH" /locus_tag="b0769" /gene_synonym="ECK0758; JW0752" /db_xref="EcoGene:EG13664" /db_xref="GeneID:945375" CDS 800759..801811 /gene="ybhH" /locus_tag="b0769" /gene_synonym="ECK0758; JW0752" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative PrpF family isomerase" /protein_id="NP_415290.1" /db_xref="GI:16128737" /db_xref="ASAP:ABE-0002618" /db_xref="UniProtKB/Swiss-Prot:P0AAV8" /db_xref="EcoGene:EG13664" /db_xref="GeneID:945375" /translation="MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGND LEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGA FAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVA LTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELD ADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRA LAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRAS VIRTTRKIFSGEVYLP" gene 801887..803320 /gene="ybhI" /locus_tag="b0770" /gene_synonym="ECK0759; JW0753" /db_xref="EcoGene:EG13665" /db_xref="GeneID:945377" CDS 801887..803320 /gene="ybhI" /locus_tag="b0770" /gene_synonym="ECK0759; JW0753" /function="orf; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative membrane pump protein" /codon_start=1 /transl_table=11 /product="putative DASS family tricarboxylate or dicarboxylate transporter" /protein_id="NP_415291.1" /db_xref="GI:16128738" /db_xref="ASAP:ABE-0002621" /db_xref="UniProtKB/Swiss-Prot:P75763" /db_xref="EcoGene:EG13665" /db_xref="GeneID:945377" /translation="MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIV GLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAA FVTTGLGKRIAYLLIGKIGNTTLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSV AVALGSEPEKSPRRVGHYLMMSIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISW GGWALAAGLPGIIMLLVTPLVIYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLG VFVLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGII GLSSLLSKVKFFEWLAEVFKNNLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAML PVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGA VLTILTFLVHITLGVWWWNMLIGWNML" gene 803503..805764 /gene="ybhJ" /locus_tag="b0771" /gene_synonym="ECK0760; JW5103" /db_xref="EcoGene:EG13666" /db_xref="GeneID:945380" CDS 803503..805764 /gene="ybhJ" /locus_tag="b0771" /gene_synonym="ECK0760; JW5103" /function="putative enzyme; Not classified" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="aconitase family protein" /protein_id="NP_415292.2" /db_xref="GI:90111167" /db_xref="ASAP:ABE-0002626" /db_xref="UniProtKB/Swiss-Prot:P75764" /db_xref="EcoGene:EG13666" /db_xref="GeneID:945380" /translation="MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSS HNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGT INGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTM AVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVK NKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQL NPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAH GKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPS SQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREG SKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQG FVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRS NPIGLAEFTLSRRDPGYVSRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPL QTEIGSMVYAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQM AEVPTFEVGDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIK AGSLINFNKNRQM" repeat_region 805804..805981 /note="REP72 (repetitive extragenic palindromic) element; contains 4 REP sequences" gene complement(805998..807281) /gene="ybhC" /locus_tag="b0772" /gene_synonym="ECK0761; JW0755" /db_xref="EcoGene:EG12875" /db_xref="GeneID:945381" CDS complement(805998..807281) /gene="ybhC" /locus_tag="b0772" /gene_synonym="ECK0761; JW0755" /function="putative enzyme" /GO_component="GO:0009279 - cell outer membrane" /GO_process="GO:0008152 - metabolic process; GO:0000272 - polysaccharide catabolic process" /note="putative pectinesterase" /codon_start=1 /transl_table=11 /product="acyl-CoA thioesterase, lipoprotein" /protein_id="NP_415293.1" /db_xref="GI:16128740" /db_xref="ASAP:ABE-0002629" /db_xref="UniProtKB/Swiss-Prot:P46130" /db_xref="EcoGene:EG12875" /db_xref="GeneID:945381" /translation="MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPI LSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVD AAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPA DWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENT LGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVT NSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFN AFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVD DNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK" gene complement(807433..807909) /gene="ybhB" /locus_tag="b0773" /gene_synonym="ECK0762; JW0756" /db_xref="EcoGene:EG11238" /db_xref="GeneID:945383" CDS complement(807433..807909) /gene="ybhB" /locus_tag="b0773" /gene_synonym="ECK0762; JW0756" /codon_start=1 /transl_table=11 /product="kinase inhibitor homolog, UPF0098 family" /protein_id="NP_415294.1" /db_xref="GI:16128741" /db_xref="ASAP:ABE-0002632" /db_xref="UniProtKB/Swiss-Prot:P12994" /db_xref="EcoGene:EG11238" /db_xref="GeneID:945383" /translation="MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTK SFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTG YDGAAPPKGETHRYIFTVHALDIERIDVDEGASGAMVGFNVHFHSLASASITAMFS" gene complement(807968..809257) /gene="bioA" /locus_tag="b0774" /gene_synonym="ECK0763; JW0757" /db_xref="EcoGene:EG10117" /db_xref="GeneID:945376" CDS complement(807968..809257) /gene="bioA" /locus_tag="b0774" /gene_synonym="ECK0763; JW0757" /EC_number="2.6.1.62" /function="enzyme; Biosynthesis of cofactors, carriers: Biotin" /GO_process="GO:0009102 - biotin biosynthetic process" /note="7,8-diaminopelargonic acid synthetase" /codon_start=1 /transl_table=11 /product="7,8-diaminopelargonic acid synthase, PLP-dependent" /protein_id="NP_415295.1" /db_xref="GI:16128742" /db_xref="ASAP:ABE-0002635" /db_xref="UniProtKB/Swiss-Prot:P12995" /db_xref="EcoGene:EG10117" /db_xref="GeneID:945376" /translation="MTTDDLAFDQRHIWHPYTSMTSPLPVYPVVSAEGCELILSDGRR LVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQP LECVFLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNS MHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAG GMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKAL TGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQ QVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVNMAALQKFFVEQGVWIRP FGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ" gene 809344..810384 /gene="bioB" /locus_tag="b0775" /gene_synonym="ECK0764; JW0758" /db_xref="EcoGene:EG10118" /db_xref="GeneID:945370" CDS 809344..810384 /gene="bioB" /locus_tag="b0775" /gene_synonym="ECK0764; JW0758" /EC_number="2.8.1.6" /function="enzyme; Biosynthesis of cofactors, carriers: Biotin" /experiment="N-terminus verified by Edman degradation: PMID 8142361" /GO_process="GO:0009102 - biotin biosynthetic process" /note="biotin synthesis, sulfur insertion?" /codon_start=1 /transl_table=11 /product="biotin synthase" /protein_id="NP_415296.1" /db_xref="GI:16128743" /db_xref="ASAP:ABE-0002644" /db_xref="UniProtKB/Swiss-Prot:P12996" /db_xref="EcoGene:EG10118" /db_xref="GeneID:945370" /translation="MAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVST LLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAW KNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEF YGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPES VPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMC FMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMT PDTDEYYNAAAL" gene 810381..811535 /gene="bioF" /locus_tag="b0776" /gene_synonym="ECK0765; JW0759" /db_xref="EcoGene:EG10121" /db_xref="GeneID:945384" CDS 810381..811535 /gene="bioF" /locus_tag="b0776" /gene_synonym="ECK0765; JW0759" /EC_number="2.3.1.47" /function="enzyme; Biosynthesis of cofactors, carriers: Biotin" /GO_process="GO:0009102 - biotin biosynthetic process" /codon_start=1 /transl_table=11 /product="8-amino-7-oxononanoate synthase" /protein_id="NP_415297.1" /db_xref="GI:16128744" /db_xref="ASAP:ABE-0002646" /db_xref="UniProtKB/Swiss-Prot:P12998" /db_xref="EcoGene:EG10121" /db_xref="GeneID:945384" /translation="MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNF SSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRA LLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLAR LLASPCPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRG SCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQAL RASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQL AEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG" gene 811522..812277 /gene="bioC" /locus_tag="b0777" /gene_synonym="ECK0766; JW0760" /db_xref="EcoGene:EG10119" /db_xref="GeneID:945388" CDS 811522..812277 /gene="bioC" /locus_tag="b0777" /gene_synonym="ECK0766; JW0760" /function="enzyme; Biosynthesis of cofactors, carriers: Biotin" /GO_process="GO:0009102 - biotin biosynthetic process" /note="biotin biosynthesis; reaction prior to pimeloyl CoA" /codon_start=1 /transl_table=11 /product="malonyl-ACP O-methyltransferase, SAM-dependent" /protein_id="NP_415298.1" /db_xref="GI:16128745" /db_xref="ASAP:ABE-0002648" /db_xref="UniProtKB/Swiss-Prot:P12999" /db_xref="EcoGene:EG10119" /db_xref="GeneID:945388" /translation="MATVNKQAIAAAFGRAAAHYEQHADLQRQSADALLAMLPQRKYT HVLDAGCGPGWMSRHWRERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATA TFDLAWSNLAVQWCGNLSTALRELYRVVRPKGVVAFTTLVQGSLPELHQAWQAVDERP HANRFLPPDEIEQSLNGVHYQHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRIL TRSQLQRLQLAWPQQQGRYPLTYHLFLGVIARE" gene 812270..812947 /gene="bioD" /locus_tag="b0778" /gene_synonym="ECK0767; JW0761" /db_xref="EcoGene:EG10120" /db_xref="GeneID:945387" CDS 812270..812947 /gene="bioD" /locus_tag="b0778" /gene_synonym="ECK0767; JW0761" /EC_number="6.3.3.3" /function="enzyme; Biosynthesis of cofactors, carriers: Biotin" /GO_process="GO:0009102 - biotin biosynthetic process" /codon_start=1 /transl_table=11 /product="dethiobiotin synthetase" /protein_id="NP_415299.1" /db_xref="GI:16128746" /db_xref="ASAP:ABE-0002650" /db_xref="UniProtKB/Swiss-Prot:P13000" /db_xref="EcoGene:EG10120" /db_xref="GeneID:945387" /translation="MSKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVASGS EKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAEPTSPHIISAQEGRPIESLVMSAG LRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTA QVIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGK YINLALL" gene 813526..815547 /gene="uvrB" /locus_tag="b0779" /gene_synonym="dar-1; dar-6; ECK0768; JW0762" /db_xref="EcoGene:EG11062" /db_xref="GeneID:945385" CDS 813526..815547 /gene="uvrB" /locus_tag="b0779" /gene_synonym="dar-1; dar-6; ECK0768; JW0762" /function="enzyme; Degradation of DNA" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006308 - DNA catabolic process; GO:0006281 - DNA repair; GO:0009314 - response to radiation; GO:0009432 - SOS response" /note="DNA repair; excision nuclease subunit B" /codon_start=1 /transl_table=11 /product="exision nuclease of nucleotide excision repair, DNA damage recognition component" /protein_id="NP_415300.1" /db_xref="GI:16128747" /db_xref="ASAP:ABE-0002658" /db_xref="UniProtKB/Swiss-Prot:P0A8F8" /db_xref="EcoGene:EG11062" /db_xref="GeneID:945385" /translation="MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSG KTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYV PSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLH LTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS" repeat_region 815585..815681 /note="RIP73 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(815739..816647) /gene="ybhK" /locus_tag="b0780" /gene_synonym="ECK0769; JW0763" /db_xref="EcoGene:EG13667" /db_xref="GeneID:945390" CDS complement(815739..816647) /gene="ybhK" /locus_tag="b0780" /gene_synonym="ECK0769; JW0763" /function="putative structure; Not classified" /note="putative structural protein" /codon_start=1 /transl_table=11 /product="putative CofD superfamily transferase" /protein_id="NP_415301.1" /db_xref="GI:16128748" /db_xref="ASAP:ABE-0002661" /db_xref="UniProtKB/Swiss-Prot:P75767" /db_xref="EcoGene:EG13667" /db_xref="GeneID:945390" /translation="MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDN GGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLK ALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTP IQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMV YIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVL EASDIPYRHDRQLLHNALEKALQALG" gene 817044..818033 /gene="moaA" /locus_tag="b0781" /gene_synonym="bisA; chlA; ECK0770; JW0764; narA" /db_xref="EcoGene:EG11595" /db_xref="GeneID:945392" CDS 817044..818033 /gene="moaA" /locus_tag="b0781" /gene_synonym="bisA; chlA; ECK0770; JW0764; narA" /function="enzyme; Biosynthesis of cofactors, carriers: Molybdopterin" /experiment="N-terminus verified by Edman degradation: PMID 8361352" /GO_process="GO:0006777 - Mo-molybdopterin cofactor biosynthetic process" /note="molybdopterin biosynthesis, protein A" /codon_start=1 /transl_table=11 /product="molybdopterin biosynthesis protein A" /protein_id="NP_415302.1" /db_xref="GI:16128749" /db_xref="ASAP:ABE-0002669" /db_xref="UniProtKB/Swiss-Prot:P30745" /db_xref="EcoGene:EG11595" /db_xref="GeneID:945392" /translation="MASQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPSGVTNK GFLTVDEIRRVTRAFARLGTEKVRLTGGEPSLRRDFTDIIAAVRENDAIRQIAVTTNG YRLERDVASWRDAGLTGINVSVDSLDARQFHAITGQDKFNQVMAGIDAAFEAGFEKVK VNTVLMRDVNHHQLDTFLNWIQHRPIQLRFIELMETGEGSELFRKHHISGQVLRDELL RRGWIHQLRQRSDGPAQVFCHPDYAGEIGLIMPYEKDFCATCNRLRVSSIGKLHLCLF GEGGVNLRDLLEDDTQQQALEARISAALREKKQTHFLHQNNTGITQNLSYIGG" gene 818055..818567 /gene="moaB" /locus_tag="b0782" /gene_synonym="ECK0771; JW0765" /db_xref="EcoGene:EG11596" /db_xref="GeneID:945396" CDS 818055..818567 /gene="moaB" /locus_tag="b0782" /gene_synonym="ECK0771; JW0765" /function="enzyme; Biosynthesis of cofactors, carriers: Molybdopterin" /GO_process="GO:0006777 - Mo-molybdopterin cofactor biosynthetic process" /note="moaB is not required for molybdopterin biosynthesis" /codon_start=1 /transl_table=11 /product="inactive molybdopterin adenylyltransferase" /protein_id="NP_415303.1" /db_xref="GI:16128750" /db_xref="ASAP:ABE-0002671" /db_xref="UniProtKB/Swiss-Prot:P0AEZ9" /db_xref="EcoGene:EG11596" /db_xref="GeneID:945396" /translation="MSQVSTEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHV VDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFDREVEGF GEVFRMLSFEEIGTSTLQSRAVAGVANKTLIFAMPGSTKACRTAWENIIAPQLDARTR PCNFHPHLKK" gene 818570..819055 /gene="moaC" /locus_tag="b0783" /gene_synonym="ECK0772; JW0766" /db_xref="EcoGene:EG11666" /db_xref="GeneID:945397" CDS 818570..819055 /gene="moaC" /locus_tag="b0783" /gene_synonym="ECK0772; JW0766" /function="enzyme; Biosynthesis of cofactors, carriers: Molybdopterin" /GO_process="GO:0006777 - Mo-molybdopterin cofactor biosynthetic process" /codon_start=1 /transl_table=11 /product="molybdopterin biosynthesis, protein C" /protein_id="NP_415304.1" /db_xref="GI:16128751" /db_xref="ASAP:ABE-0002673" /db_xref="UniProtKB/Swiss-Prot:P0A738" /db_xref="EcoGene:EG11666" /db_xref="GeneID:945397" /translation="MSQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMI IDGRHHKGDVFATARIAGIQAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETL CRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVEAD D" gene 819048..819293 /gene="moaD" /locus_tag="b0784" /gene_synonym="chlM; ECK0773; JW0767" /db_xref="EcoGene:EG11597" /db_xref="GeneID:945398" CDS 819048..819293 /gene="moaD" /locus_tag="b0784" /gene_synonym="chlM; ECK0773; JW0767" /function="enzyme; Biosynthesis of cofactors, carriers: Molybdopterin" /experiment="N-terminus verified by Edman degradation: PMID 8514782" /GO_process="GO:0006777 - Mo-molybdopterin cofactor biosynthetic process" /note="molybdopterin biosynthesis" /codon_start=1 /transl_table=11 /product="molybdopterin synthase, small subunit" /protein_id="NP_415305.1" /db_xref="GI:16128752" /db_xref="ASAP:ABE-0002675" /db_xref="UniProtKB/Swiss-Prot:P30748" /db_xref="EcoGene:EG11597" /db_xref="GeneID:945398" /translation="MIKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQSDRWAL ALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPVTGG" gene 819295..819747 /gene="moaE" /locus_tag="b0785" /gene_synonym="ECK0774; JW0768" /db_xref="EcoGene:EG11598" /db_xref="GeneID:945399" CDS 819295..819747 /gene="moaE" /locus_tag="b0785" /gene_synonym="ECK0774; JW0768" /function="enzyme; Biosynthesis of cofactors, carriers: Molybdopterin" /GO_process="GO:0006777 - Mo-molybdopterin cofactor biosynthetic process" /note="molybdopterin converting factor, subunit 2" /codon_start=1 /transl_table=11 /product="molybdopterin synthase, large subunit" /protein_id="NP_415306.1" /db_xref="GI:16128753" /db_xref="ASAP:ABE-0002678" /db_xref="UniProtKB/Swiss-Prot:P30749" /db_xref="EcoGene:EG11598" /db_xref="GeneID:945399" /translation="MAETKIVVGPQPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLG DSVNALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHRIGELWPGDEIVFVGVTSA HRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVEARESDQQAAKRW" repeat_region 819758..819784 /note="REP74 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 819884..820588 /gene="ybhL" /locus_tag="b0786" /gene_synonym="aceP; ECK0775; JW0769" /db_xref="EcoGene:EG13668" /db_xref="GeneID:945401" CDS 819884..820588 /gene="ybhL" /locus_tag="b0786" /gene_synonym="aceP; ECK0775; JW0769" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative acetate transporter; BAX Inhibitor-1 family inner membrane protein" /protein_id="NP_415307.1" /db_xref="GI:16128754" /db_xref="ASAP:ABE-0002685" /db_xref="UniProtKB/Swiss-Prot:P0AAC4" /db_xref="EcoGene:EG13668" /db_xref="GeneID:945401" /translation="MDRFPRSDSIVQPRAGLQTYMAQVYGWMTVGLLLTAFVAWYAAN SAAVMELLFTNRVFLIGLIIAQLALVIVLSAMIQKLSAGVTTMLFMLYSALTGLTLSS IFIVYTAASIASTFVVTAGMFGAMSLYGYTTKRDLSGFGNMLFMALIGIVLASLVNFW LKSEALMWAVTYIGVIVFVGLTAYDTQKLKNMGEQIDTRDTSNLRKYSILGALTLYLD FINLFLMLLRIFGNRR" gene 820793..821506 /gene="ybhM" /locus_tag="b0787" /gene_synonym="ECK0776; JW0770" /db_xref="EcoGene:EG13669" /db_xref="GeneID:949001" CDS 820793..821506 /gene="ybhM" /locus_tag="b0787" /gene_synonym="ECK0776; JW0770" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="BAX Inhibitor-1 family inner membrane protein" /protein_id="NP_415308.1" /db_xref="GI:16128755" /db_xref="ASAP:ABE-0002688" /db_xref="UniProtKB/Swiss-Prot:P75769" /db_xref="EcoGene:EG13669" /db_xref="GeneID:949001" /translation="MESYSQNSNKLDFQHEARILNGIWLITALGLVATAGLAWGAKYI EITATKYDSPPMYVAIGLLLLCMYGLSKDINKINAAIAGVIYLFLLSLVAIVVASLVP VYAIIIVFSTAGAMFLISMLAGLLFNVDPGSHRFIIMMTLTGLALVIIVNAALMSERP IWIISCLMIVLWSGIISHGRNKLLELAGKCHSEELWSPVRCAFTGALTLYYYFIGFFG ILAAIAITLVWQRHTRFFH" gene complement(821542..822498) /gene="ybhN" /locus_tag="b0788" /gene_synonym="ECK0777; JW0771" /db_xref="EcoGene:EG13670" /db_xref="GeneID:945410" CDS complement(821542..822498) /gene="ybhN" /locus_tag="b0788" /gene_synonym="ECK0777; JW0771" /codon_start=1 /transl_table=11 /product="UPF0104 family inner membrane protein" /protein_id="NP_415309.1" /db_xref="GI:16128756" /db_xref="ASAP:ABE-0002690" /db_xref="UniProtKB/Swiss-Prot:P75770" /db_xref="EcoGene:EG13670" /db_xref="GeneID:945410" /translation="MSKSHPRWRLAKKILTWLFFIAVIVLLVVYAKKVDWEEVWKVIR DYNRVALLSAVGLVVVSYLIYGCYDLLARFYCGHKLAKRQVMLVSFICYAFNLTLSTW VGGIGMRYRLYSRLGLPGSTITRIFSLSITTNWLGYILLAGIIFTAGVVELPDHWYVD QTTLRILGIGLLMIIAVYLWFCAFAKHRHMTIKGQKLVLPSWKFALAQMLISSVNWMV MGAIIWLLLGQSVNYFFVLGVLLVSSIAGVIVHIPAGIGVLEAVFIALLAGEHTSKGT IIAALLAYRVLYYFIPLLLALICYLLLESQAKKLRAKNEAAM" gene complement(822498..823739) /gene="clsB" /locus_tag="b0789" /gene_synonym="ECK0778; JW0772; ybhO" /db_xref="EcoGene:EG13671" /db_xref="GeneID:945409" CDS complement(822498..823739) /gene="clsB" /locus_tag="b0789" /gene_synonym="ECK0778; JW0772; ybhO" /EC_number="2.7.8.-" /function="Enzyme; Macromolecule synthesis: Phospholipids" /GO_process="GO:0008654 - phospholipid biosynthetic process" /note="cardiolipin synthase activity" /codon_start=1 /transl_table=11 /product="cardiolipin synthase 2" /protein_id="NP_415310.1" /db_xref="GI:16128757" /db_xref="ASAP:ABE-0002692" /db_xref="UniProtKB/Swiss-Prot:P0AA84" /db_xref="EcoGene:EG13671" /db_xref="GeneID:945409" /translation="MKCSWREGNKIQLLENGEQYYPAVFKAIGEAQERIILETFIWFE DDVGKQLHAALLAAAQRGVKAEVLLDGYGSPDLSDEFVNELTAAGVVFRYYDPRPRLF GMRTNVFRRMHRKIVVIDARIAFIGGLNYSAEHMSSYGPEAKQDYAVRLEGPIVEDIL QFELENLPGQSAARRWWRRHHKAEENRQPGEAQVLLVWRDNEEHRDDIERHYLKMLTQ ARREVIIANAYFFPGYRFLHALRKAARRGVRIKLIIQGEPDMPIVRVGARLLYNYLVK GGVQVFEYRRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANVIIHDRHFNQTLRD NLNGIIAADCQQVDETMLPKRTWWNLTKSVLAFHFLRHFPALVGWLPAHTPRLAQVDP PAQPTMETQDRVETENTGVKP" gene complement(823736..824497) /gene="ybhP" /locus_tag="b0790" /gene_synonym="ECK0779; JW0773" /db_xref="EcoGene:EG13672" /db_xref="GeneID:945408" CDS complement(823736..824497) /gene="ybhP" /locus_tag="b0790" /gene_synonym="ECK0779; JW0773" /GO_process="GO:0006308 - DNA catabolic process" /codon_start=1 /transl_table=11 /product="endo/exonuclease/phosphatase family protein" /protein_id="NP_415311.1" /db_xref="GI:16128758" /db_xref="ASAP:ABE-0002696" /db_xref="UniProtKB/Swiss-Prot:P0AAW1" /db_xref="EcoGene:EG13672" /db_xref="GeneID:945408" /translation="MPDQTQQFSFKVLTINIHKGFTAFNRRFILPELRDAVRTVSADI VCLQEVMGAHEVHPLHVENWPDTSHYEFLADTMWSDFAYGRNAVYPEGHHGNAVLSRY PIEHYENRDVSVDGAEKRGVLYCRIVPPMTGKAIHVMCVHLGLREAHRQAQLAMLAEW VNELPDGEPVLVAGDFNDWRQKANHPLKVQAGLDEIFTRAHGRPARTFPVQFPLLRLD RIYVKNASASAPTALPLRTWRHLSDHAPLSAEIHL" gene 824630..825040 /gene="ybhQ" /locus_tag="b0791" /gene_synonym="ECK0780; JW0774" /db_xref="EcoGene:EG13673" /db_xref="GeneID:945405" CDS 824630..825040 /gene="ybhQ" /locus_tag="b0791" /gene_synonym="ECK0780; JW0774" /codon_start=1 /transl_table=11 /product="inner membrane protein" /protein_id="NP_415312.1" /db_xref="GI:16128759" /db_xref="ASAP:ABE-0002699" /db_xref="UniProtKB/Swiss-Prot:P0AAW5" /db_xref="EcoGene:EG13673" /db_xref="GeneID:945405" /translation="MKWQQRVRVATGLSCWQIMLHLLVVALLVVGWMSKTLVHVGVGL CALYCVTVVMMLVFQRHPEQRWREVADVLEELTTTWYFGAALIVLWLLSRVLENNFLL AIAGLAILAGPAVVSLLAKDKKLHHLTSKHRVRR" gene complement(825002..826108) /gene="ybhR" /locus_tag="b0792" /gene_synonym="ECK0781; JW5803" /db_xref="EcoGene:EG13674" /db_xref="GeneID:945403" CDS complement(825002..826108) /gene="ybhR" /locus_tag="b0792" /gene_synonym="ECK0781; JW5803" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative ABC transporter permease" /protein_id="NP_415313.1" /db_xref="GI:16128760" /db_xref="ASAP:ABE-0002701" /db_xref="UniProtKB/Swiss-Prot:P0AFP9" /db_xref="EcoGene:EG13674" /db_xref="GeneID:945403" /translation="MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLE VTNATIAIYDEDNGEHSVELTQRFARASAFTHVLLLKSPQEIRPTIDTQKALLLVRFP ADFSRKLDTFQTAPLQLILDGRNSNSAQIAANYLQQIVKNYQQELLEGKPKPNNSELV VRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQI FIGKAVPALIVATFQATIVLAIGIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISS LCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINPIRHFTDITKQIYLK DASLDIVWNSLWPLLVITATTGSAAYAMFRRKVM" gene complement(826119..827252) /gene="ybhS" /locus_tag="b0793" /gene_synonym="ECK0782; JW0777" /db_xref="EcoGene:EG13675" /db_xref="GeneID:945411" CDS complement(826119..827252) /gene="ybhS" /locus_tag="b0793" /gene_synonym="ECK0782; JW0777" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative ABC transporter permease" /protein_id="NP_415314.1" /db_xref="GI:16128761" /db_xref="ASAP:ABE-0002703" /db_xref="UniProtKB/Swiss-Prot:P0AFQ2" /db_xref="EcoGene:EG13675" /db_xref="GeneID:945411" /translation="MSNPILSWRRVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFG YGINLDSSKLRVGILLEQRSEAALDFTHTMTGSPYIDATISDNRQELIAKMQAGKIRG LVVIPVDFAEQMERANATAPIQVITDGSEPNTANFVQGYVEGIWQIWQMQRAEDNGQT FEPLIDVQTRYWFNPAAISQHFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLS TEITRTELLLCKLIPYYFLGMLAMLLCMLVSVFILGVPYRGSLLILFFISSLFLLSTL GMGLLISTITRNQFNAAQVALNAAFLPSIMLSGFIFQIDSMPAVIRAVTYIIPARYFV STLQSLFLAGNIPVVLVVNVLFLIASAVMFIGLTWLKTKRRLD" gene complement(827245..828981) /gene="ybhF" /locus_tag="b0794" /gene_synonym="ECK0783; JW5104" /db_xref="EcoGene:EG13314" /db_xref="GeneID:945413" CDS complement(827245..828981) /gene="ybhF" /locus_tag="b0794" /gene_synonym="ECK0783; JW5104" /function="putative transport; Not classified" /GO_component="GO:0005737 - cytoplasm" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="putative ABC transporter ATPase" /protein_id="NP_415315.4" /db_xref="GI:90111168" /db_xref="ASAP:ABE-0002707" /db_xref="UniProtKB/Swiss-Prot:P0A9U1" /db_xref="EcoGene:EG13314" /db_xref="GeneID:945413" /translation="MNDAVITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGA GKTTLMRMLAGLLKPDSGSATVIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLN LYADLRSVTGEARKQTFARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVL LLDEPGVGVDPISRRELWQMVHELAGEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQ GEPKALTQTMAGRSFLMTSPHEGNRKLLQRALKLPQVSDGMIQGKSVRLILKKEATPD DIRHADGMPEININETTPRFEDAFIDLLGGAGTSESPLGAILHTVEGTPGETVIEAKE LTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMD LKESSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMSEAFGL KSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVE KGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTMEQAFIQ LIHDWDKEHSNE" gene complement(828974..829972) /gene="ybhG" /locus_tag="b0795" /gene_synonym="ECK0784; JW0779" /db_xref="EcoGene:EG13315" /db_xref="GeneID:945414" CDS complement(828974..829972) /gene="ybhG" /locus_tag="b0795" /gene_synonym="ECK0784; JW0779" /function="putative membrane; Not classified" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative membrane protein" /codon_start=1 /transl_table=11 /product="putative membrane fusion protein (MFP) component of efflux pump, membrane anchor" /protein_id="NP_415316.1" /db_xref="GI:16128763" /db_xref="ASAP:ABE-0002709" /db_xref="UniProtKB/Swiss-Prot:P75777" /db_xref="EcoGene:EG13315" /db_xref="GeneID:945414" /translation="MMKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLTLYGNVDIRT VNLSFRVGGRVESLAVDEGDAIKAGQVLGELDHKPYEIALMQAKAGVSVAQAQYDLML AGYRNEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQA TLKSAQDKLRQYRSGNREQDIAQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTR AVEPGTVLNEGGTVFTVSLTRPVWVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQ IGFVSPTAEFTPKTVETPDLRTDLVYRLRIVVTDADDALRQGMPVTVQFGDEAGHE" gene complement(829972..830643) /gene="ybiH" /locus_tag="b0796" /gene_synonym="ECK0785; JW0780" /db_xref="EcoGene:EG12406" /db_xref="GeneID:945421" CDS complement(829972..830643) /gene="ybiH" /locus_tag="b0796" /gene_synonym="ECK0785; JW0780" /function="putative regulator; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator" /codon_start=1 /transl_table=11 /product="DUF1956 domain-containing tetR family putative transcriptional regulator" /protein_id="NP_415317.4" /db_xref="GI:162135896" /db_xref="ASAP:ABE-0002711" /db_xref="UniProtKB/Swiss-Prot:P0ACU0" /db_xref="EcoGene:EG12406" /db_xref="GeneID:945421" /translation="MNNPAMTIKGEQAKKQLIAAALAQFGEYGMNATTREIAAQAGQN IAAITYYFGSKEDLYLACAQWIADFIGEQFRPHAEEAERLFAQPQPDRAAIRELILRA CRNMIKLLTQDDTVNLSKFISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDA NDTRMILHTHALIGEILAFRLGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGL SQRSL" gene 830872..832236 /gene="rhlE" /locus_tag="b0797" /gene_synonym="ECK0786; JW0781" /db_xref="EcoGene:EG11235" /db_xref="GeneID:945425" CDS 830872..832236 /gene="rhlE" /locus_tag="b0797" /gene_synonym="ECK0786; JW0781" /function="putative enzyme; Not classified" /GO_process="GO:0009451 - RNA modification" /note="putative ATP-dependent RNA helicase" /codon_start=1 /transl_table=11 /product="ATP-dependent RNA helicase" /protein_id="NP_415318.1" /db_xref="GI:16128765" /db_xref="ASAP:ABE-0002719" /db_xref="UniProtKB/Swiss-Prot:P25888" /db_xref="EcoGene:EG11235" /db_xref="GeneID:945425" /translation="MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMAS AQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR MLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASD QVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIH GNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIG RTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQ QRGGGGRGQGGGRGQQQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRPRKP AAAQ" repeat_region 832289..832386 /note="RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(832468..832950) /gene="ybiA" /locus_tag="b0798" /gene_synonym="ECK0787; JW0783" /db_xref="EcoGene:EG11579" /db_xref="GeneID:945426" CDS complement(832468..832950) /gene="ybiA" /locus_tag="b0798" /gene_synonym="ECK0787; JW0783" /codon_start=1 /transl_table=11 /product="DUF1768 family protein" /protein_id="NP_415319.1" /db_xref="GI:16128766" /db_xref="ASAP:ABE-0002722" /db_xref="UniProtKB/Swiss-Prot:P30176" /db_xref="EcoGene:EG11579" /db_xref="GeneID:945426" /translation="MPVRAQRIQHVMQDTIINFYSTSDDYGDFSNFAAWPIKVDGKTW PTSEHYFQAQKFLDEKYREEIRRVSSPMVAARMGRDRSKPLRKNWESVKEQVMRKALR AKFEQHAELRALLLATAPAKLVEHTENDAYWGDGGHGKGKNRLGYLLMELREQLAIEK " gene 833070..835220 /gene="dinG" /locus_tag="b0799" /gene_synonym="ECK0788; JW0784; rarB" /db_xref="EcoGene:EG11357" /db_xref="GeneID:945431" CDS 833070..835220 /gene="dinG" /locus_tag="b0799" /gene_synonym="ECK0788; JW0784; rarB" /function="putative enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006281 - DNA repair; GO:0009432 - SOS response" /note="probably ATP-dependent helicase" /codon_start=1 /transl_table=11 /product="ATP-dependent DNA helicase" /protein_id="NP_415320.1" /db_xref="GI:16128767" /db_xref="ASAP:ABE-0002732" /db_xref="UniProtKB/Swiss-Prot:P27296" /db_xref="EcoGene:EG11357" /db_xref="GeneID:945431" /translation="MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG EEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK IIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLK GDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAE VVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQL DLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEH RFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRA LGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWR SIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVE PSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGD QPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVI TEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKR LLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR" gene 835248..836210 /gene="ybiB" /locus_tag="b0800" /gene_synonym="ECK0789; JW0785" /db_xref="EcoGene:EG11580" /db_xref="GeneID:945424" CDS 835248..836210 /gene="ybiB" /locus_tag="b0800" /gene_synonym="ECK0789; JW0785" /function="putative enzyme; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 17895580" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="putative family 3 glycosyltransferase" /protein_id="NP_415321.1" /db_xref="GI:16128768" /db_xref="ASAP:ABE-0002734" /db_xref="UniProtKB/Swiss-Prot:P30177" /db_xref="EcoGene:EG11580" /db_xref="GeneID:945424" /translation="MDYRKIIKEIGRGKNHARDLDRDTARGLYAHMLNGEVPDLELGG VLIALRIKGEGEAEMLGFYEAMQNHTIKLTPPAGKPMPIVIPSYNGARKQANLTPLLA ILLHKLGFPVVVHGVSEDPTRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGA FCPPLEKQLAMRWRMGVRNSAHTLAKLATPFAEGEALRLSSVSHPEYIGRVAKFFSDI GGRALLMHGTEGEVYANPQRCPQINLIDREGMRVLYEKQDTAGSELLPQAKDPETTAQ WIERCLAGSEPIPESLKIQMACCLVATGEAATISDGLARVNQAF" repeat_region 836222..836245 /note="REP76 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 836351..837436 /gene="ybiC" /locus_tag="b0801" /gene_synonym="ECK0790; JW0786" /db_xref="EcoGene:EG11581" /db_xref="GeneID:945412" CDS 836351..837436 /gene="ybiC" /locus_tag="b0801" /gene_synonym="ECK0790; JW0786" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative dehydrogenase" /protein_id="NP_415322.1" /db_xref="GI:16128769" /db_xref="ASAP:ABE-0002738" /db_xref="UniProtKB/Swiss-Prot:P30178" /db_xref="EcoGene:EG11581" /db_xref="GeneID:945412" /translation="MESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAG HDSHGIGMIPSYVRSWSQGHLQINHHAKTVKEAGAAVTLDGDRAFGQVAAHEAMALGI EKAHQHGIAAVALHNSHHIGRIGYWAEQCAAAGFVSIHFVSVVGIPMVAPFHGRDSRF GTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPA VMQESPLGSLLTFAEHKGYALAAMCEILGGALSGGKTTHQETLQTSPDAILNCMTTII INPELFGAPDCNAQTEAFAEWVKASPHDDDKPILLPGEWEVNTRRERQKQGIPLDAGS WQAICDAARQIGMPEETLQAFCQQLAS" repeat_region 837539..837661 /note="REP77 (repetitive extragenic palindromic) element; contains 3 REP sequences" gene complement(837665..837925) /gene="ybiJ" /locus_tag="b0802" /gene_synonym="ECK0791; JW0787" /db_xref="EcoGene:EG12422" /db_xref="GeneID:945433" CDS complement(837665..837925) /gene="ybiJ" /locus_tag="b0802" /gene_synonym="ECK0791; JW0787" /codon_start=1 /transl_table=11 /product="DUF1471 family putative periplasmic protein" /protein_id="NP_415323.1" /db_xref="GI:16128770" /db_xref="ASAP:ABE-0002741" /db_xref="UniProtKB/Swiss-Prot:P0AAX3" /db_xref="EcoGene:EG12422" /db_xref="GeneID:945433" /translation="MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADG ASTLDALEAKLAEKAAAAGASGYSITSATNNNKLSGTAVIYK" gene complement(838190..838456) /gene="ybiI" /locus_tag="b0803" /gene_synonym="ECK0792; JW0788" /db_xref="EcoGene:EG12421" /db_xref="GeneID:945434" CDS complement(838190..838456) /gene="ybiI" /locus_tag="b0803" /gene_synonym="ECK0792; JW0788" /codon_start=1 /transl_table=11 /product="DksA-type zinc finger protein" /protein_id="NP_415324.1" /db_xref="GI:16128771" /db_xref="ASAP:ABE-0002744" /db_xref="UniProtKB/Swiss-Prot:P41039" /db_xref="EcoGene:EG12421" /db_xref="GeneID:945434" /translation="MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLDECEECGA PIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR" gene complement(838530..839207) /gene="ybiX" /locus_tag="b0804" /gene_synonym="ECK0793; JW5105" /db_xref="EcoGene:EG13316" /db_xref="GeneID:947502" CDS complement(838530..839207) /gene="ybiX" /locus_tag="b0804" /gene_synonym="ECK0793; JW5105" /function="putative enzyme; Not classified" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="Fe(II)-dependent oxygenase superfamily protein" /protein_id="NP_415325.4" /db_xref="GI:90111170" /db_xref="ASAP:ABE-0002746" /db_xref="UniProtKB/Swiss-Prot:P75779" /db_xref="EcoGene:EG13316" /db_xref="GeneID:947502" /translation="MMYHIPGVLSPQDVARFREQLEQAEWVDGRVTTGAQGAQVKNNQ QVDTRSTLYAALQNEVLNAVNQHALFFAAALPRTLSTPLFNRYQNNETYGFHVDGAVR SHPQNGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGDLVLYPSSSLHCV TPVTRGVRVASFMWIQSMIRDDKKRAMLFELDNNIQSLKSRYGESEEILSLLNLYHNL LREWSEI" gene complement(839249..841531) /gene="fiu" /locus_tag="b0805" /gene_synonym="ECK0794; JW0790; ybiL" /db_xref="EcoGene:EG13317" /db_xref="GeneID:946246" CDS complement(839249..841531) /gene="fiu" /locus_tag="b0805" /gene_synonym="ECK0794; JW0790; ybiL" /function="membrane; Outer membrane constituents" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006826 - iron ion transport" /note="ferric iron outer membrane transporter, TonB-dependent; siderophore receptor for ferri-dihydroxybenzoylserine, ferri-dihydroxybenzoate and other catecholate siderophores; surface receptor for colicins G, H, and E492" /codon_start=1 /transl_table=11 /product="catecholate siderophore receptor" /protein_id="NP_415326.1" /db_xref="GI:16128773" /db_xref="ASAP:ABE-0002749" /db_xref="UniProtKB/Swiss-Prot:P75780" /db_xref="EcoGene:EG13317" /db_xref="GeneID:946246" /translation="MENNRNFPARQFHSLTFFAGLCIGITPVAQALAAEGQTNADDTL VVEASTPSLYAPQQSADPKFSRPVADTTRTMTVISEQVIKDQGATNLTDALKNVPGVG AFFAGENGNSTTGDAIYMRGADTSNSIYIDGIRDIGSVSRDTFNTEQVEVIKGPSGTD YGRSAPTGSINMISKQPRNDSGIDASASIGSAWFRRGTLDVNQVIGDTTAVRLNVMGE KTHDAGRDKVKNERYGVAPSVAFGLGTANRLYLNYLHVTQHNTPDGGIPTIGLPGYSA PSAGTAALNHSGKVDTHNFYGTDSDYDDSTTDTATMRFEHDINDNTTIRNTTRWSRVK QDYLMTAIMGGASNITQPTSDVNSWTWSRTANTKDVSNKILTNQTNLTSTFYTGSIGH DVSTGVEFTRETQTNYGVNPVTLPAVNIYHPDSSIHPGGLTRNGANANGQTDTFAIYA FDTLQITRDFELNGGIRLDNYHTEYDSATACGGSGRGAITCPTGVAKGSPVTTVDTAK SGNLMNWKAGALYHLTENGNVYINYAVSQQPPGGNNFALAQSGSGNSANRTDFKPQKA NTSEIGTKWQVLDKRLLLTAALFRTDIENEVEQNDDGTYSQYGKKRVEGYEISVAGNI TPAWQVIGGYTQQKATIKNGKDVAQDGSSSLPYTPEHAFTLWSQYQATDDISVGAGAR YIGSMHKGSDGAVGTPAFTEGYWVADAKLGYRVNRNLDFQLNVYNLFDTDYVASINKS GYRYHPGEPRTFLLTANMHF" gene complement(841796..842056) /gene="mcbA" /locus_tag="b0806" /gene_synonym="ECK0795; JW5106; ybiM" /db_xref="EcoGene:EG13318" /db_xref="GeneID:947523" CDS complement(841796..842056) /gene="mcbA" /locus_tag="b0806" /gene_synonym="ECK0795; JW5106; ybiM" /codon_start=1 /transl_table=11 /product="colanic acid mucoidy stimulation protein" /protein_id="NP_415327.2" /db_xref="GI:90111171" /db_xref="ASAP:ABE-0002753" /db_xref="UniProtKB/Swiss-Prot:P0AAX6" /db_xref="EcoGene:EG13318" /db_xref="GeneID:947523" /translation="MKKCLTLLIATVLSGISLTAYAAQPMSNLDSGQLRPAGTVSATG ASNLSDLEDKLAEKAREQGAKGYVINSAGGNDQMFGTATIYK" gene 842332..843258 /gene="rlmF" /locus_tag="b0807" /gene_synonym="ECK0796; JW5107; ybiN" /db_xref="EcoGene:EG13319" /db_xref="GeneID:944938" CDS 842332..843258 /gene="rlmF" /locus_tag="b0807" /gene_synonym="ECK0796; JW5107; ybiN" /function="enzyme; rRNA modification" /codon_start=1 /transl_table=11 /product="23S rRNA m(6)A1618 methyltransferase, SAM-dependent" /protein_id="NP_415328.4" /db_xref="GI:162135897" /db_xref="ASAP:ABE-0002757" /db_xref="UniProtKB/Swiss-Prot:P75782" /db_xref="EcoGene:EG13319" /db_xref="GeneID:944938" /translation="MSAQKPGLHPRNRHHSRYDLATLCQVNPELRQFLTLTPAGEQSV DFANPLAVKALNKALLAHFYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIP ANASILDIGVGANCIYPLIGVHEYGWRFTGSETSSQALSSAQAIISSNPGLNRAIRLR RQKESGAIFNGIIHKNEQYDATLCNPPFHDSAAAARAGSERKRRNLGLNKDDALNFGG QQQELWCEGGEVTFIKKMIEESKGFAKQVMWFTSLVSRGENLPPLYRALTDVGAVKVV KKEMAQGQKQSRFIAWTFMNDEQRRRFVNRQR" gene complement(843255..845480) /gene="ybiO" /locus_tag="b0808" /gene_synonym="ECK0797; JW5108" /db_xref="EcoGene:EG13320" /db_xref="GeneID:945935" CDS complement(843255..845480) /gene="ybiO" /locus_tag="b0808" /gene_synonym="ECK0797; JW5108" /function="putative transport; Not classified" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="mechanosensitive channel protein, intermediate conductance" /protein_id="NP_415329.4" /db_xref="GI:90111173" /db_xref="ASAP:ABE-0002760" /db_xref="UniProtKB/Swiss-Prot:P75783" /db_xref="EcoGene:EG13320" /db_xref="GeneID:945935" /translation="MRWILFILFCLLGAPAHAVSIPGVTTTTTTDSTTEPAPEPDIEQ KKAAYGALADVLDNDTSRKELIDQLRTVAATPPAEPVPKIVPPTLVEEQTVLQKVTEV SRHYGEALSARFGQLYRNITGSPHKPFNPQTFSNALTHFSMLAVLVFGFYWLIRLCAL PLYRKMGQWARQKNRERSNWLQLPAMIIGAFIIDLLLLALTLFVGQVLSDNLNAGSRT IAFQQSLFLNAFALIEFFKAVLRLIFCPNVAELRPFTIQDESARYWSRRLSWLSSLIG YGLIVAVPIISNQVNVQIGALANVIIMLCMTVWALYLIFRNKKEITQHLLNFAEHSLA FFSLFIRAFALVWHWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFVSG MFSRWLAKTITLSPHTQRNYPELQKRLNGWLSAALKTARILTVCVAVMLLLSAWGLFD FWNWLQNGAGQKTVDILIRIALILFFSAVGWTVLASLIENRLASDIHGRPLPSARTRT LLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGV FIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGI GSVVANYDVDRHEDADKANQALKDAVAELMENEEIRGLIIGEPNFAGIVGLSNTAFTL RVSFTTLPLKQWTVRFALDSQVKKHFDLAGVRAPVQTYQVLPAPGATPAEPLPPGEPT L" repeat_region 845631..845729 /note="RIP78 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(845741..846463) /gene="glnQ" /locus_tag="b0809" /gene_synonym="ECK0798; JW0794" /db_xref="EcoGene:EG10389" /db_xref="GeneID:945435" CDS complement(845741..846463) /gene="glnQ" /locus_tag="b0809" /gene_synonym="ECK0798; JW0794" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006542 - glutamine biosynthetic process" /note="ATP-binding component of glutamine high-affinity transport system" /codon_start=1 /transl_table=11 /product="glutamine transporter subunit" /protein_id="NP_415330.1" /db_xref="GI:16128777" /db_xref="ASAP:ABE-0002764" /db_xref="UniProtKB/Swiss-Prot:P10346" /db_xref="EcoGene:EG10389" /db_xref="GeneID:945435" /translation="MIEFKNVSKHFGPTQVLHNIDLNIAQGEVVVIIGPSGSGKSTLL RCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP LRVRGANKEEAEKLARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLF DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDG NPQVLIKNPPSQRLQEFLQHVS" gene complement(846460..847119) /gene="glnP" /locus_tag="b0810" /gene_synonym="ECK0799; JW0795" /db_xref="EcoGene:EG10388" /db_xref="GeneID:945621" CDS complement(846460..847119) /gene="glnP" /locus_tag="b0810" /gene_synonym="ECK0799; JW0795" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006542 - glutamine biosynthetic process" /note="glutamine high-affinity transport system; membrane component" /codon_start=1 /transl_table=11 /product="glutamine transporter subunit" /protein_id="NP_415331.1" /db_xref="GI:16128778" /db_xref="ASAP:ABE-0002766" /db_xref="UniProtKB/Swiss-Prot:P0AEQ6" /db_xref="EcoGene:EG10388" /db_xref="GeneID:945621" /translation="MQFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFAR TFGGWIANHVALVFIEVIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSG AYIAEITRGAVLSIHKGFREAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIK DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMKI L" gene complement(847258..848004) /gene="glnH" /locus_tag="b0811" /gene_synonym="ECK0800; JW0796" /db_xref="EcoGene:EG10386" /db_xref="GeneID:944872" CDS complement(847258..848004) /gene="glnH" /locus_tag="b0811" /gene_synonym="ECK0800; JW0796" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006542 - glutamine biosynthetic process" /note="periplasmic glutamine-binding protein; permease" /codon_start=1 /transl_table=11 /product="glutamine transporter subunit" /protein_id="NP_415332.1" /db_xref="GI:16128779" /db_xref="ASAP:ABE-0002771" /db_xref="UniProtKB/Swiss-Prot:P0AEQ3" /db_xref="EcoGene:EG10386" /db_xref="GeneID:944872" /translation="MKSVLKVSLAALTLAFAVSSHAADKKLVVATDTAFVPFEFKQGD KYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAID FSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPN IDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDEL RDKVNGALKTLRENGTYNEIYKKWFGTEPK" gene complement(848408..848911) /gene="dps" /locus_tag="b0812" /gene_synonym="ECK0801; JW0797; pexB; vtm" /db_xref="EcoGene:EG11415" /db_xref="GeneID:945101" CDS complement(848408..848911) /gene="dps" /locus_tag="b0812" /gene_synonym="ECK0801; JW0797; pexB; vtm" /function="regulator; Global regulatory functions" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0042594 - response to starvation" /note="global regulator, starvation conditions" /codon_start=1 /transl_table=11 /product="Fe-binding and storage protein; stress-inducible DNA-binding protein" /protein_id="NP_415333.1" /db_xref="GI:16128780" /db_xref="ASAP:ABE-0002776" /db_xref="UniProtKB/Swiss-Prot:P0ABT2" /db_xref="EcoGene:EG11415" /db_xref="GeneID:945101" /translation="MSTAKLVKSKATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLS LITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKT PLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLW FIESNIE" gene complement(849210..850097) /gene="rhtA" /locus_tag="b0813" /gene_synonym="ECK0802; JW0798; ybiF" /db_xref="EcoGene:EG12134" /db_xref="GeneID:947045" CDS complement(849210..850097) /gene="rhtA" /locus_tag="b0813" /gene_synonym="ECK0802; JW0798; ybiF" /function="putative membrane; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /note="putative transmembrane subunit" /codon_start=1 /transl_table=11 /product="threonine and homoserine efflux system" /protein_id="NP_415334.1" /db_xref="GI:16128781" /db_xref="ASAP:ABE-0002779" /db_xref="UniProtKB/Swiss-Prot:P0AA67" /db_xref="EcoGene:EG12134" /db_xref="GeneID:947045" /translation="MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVGAPGVT ALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVA LEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACW AIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVAILS TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAAS MGSTLTVRKESKIKELDIN" gene 850450..850965 /gene="ompX" /locus_tag="b0814" /gene_synonym="ECK0803; JW0799; ybiG" /db_xref="EcoGene:EG12135" /db_xref="GeneID:944967" CDS 850450..850965 /gene="ompX" /locus_tag="b0814" /gene_synonym="ECK0803; JW0799; ybiG" /function="membrane; Outer membrane constituents" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="outer membrane protein X" /protein_id="NP_415335.1" /db_xref="GI:16128782" /db_xref="ASAP:ABE-0002784" /db_xref="UniProtKB/Swiss-Prot:P0A917" /db_xref="EcoGene:EG12135" /db_xref="GeneID:944967" /translation="MKKIACLSALAAVLAFTAGTSVAATSTVTGGYAQSDAQGQMNKM GGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASI YGVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDV GTWIAGVGYRF" gene complement(851014..852597) /gene="opgE" /locus_tag="b0815" /gene_synonym="ECK0804; JW0800; ybiP" /db_xref="EcoGene:EG13321" /db_xref="GeneID:945360" CDS complement(851014..852597) /gene="opgE" /locus_tag="b0815" /gene_synonym="ECK0804; JW0800; ybiP" /function="putative enzyme; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="OPG biosynthetic transmembrane phosphoethanolamine transferase" /protein_id="NP_415336.1" /db_xref="GI:16128783" /db_xref="ASAP:ABE-0002786" /db_xref="UniProtKB/Swiss-Prot:P75785" /db_xref="EcoGene:EG13321" /db_xref="GeneID:945360" /translation="MNLTLKESLVTRSRVFSPWTAFYFLQSLLINLGLGYPFSLLYTA AFTAILLLLWRTLPRVQKVLVGVSSLVAACYFPFAQAYGAPNFNTLLALHSTNMEEST EILTIFPWYSYLVGLFIFALGVIAIRRKKENEKARWNTFDSLCLVFSVATFFVAPVQN LAWGGVFKLKDTGYPVFRFAKDVIVNNNEVIEEQERMAKLSGMKDTWTVTAVKPKYQT YVVVIGESARRDALGAFGGHWDNTPFASSVNGLIFADYIAASGSTQKSLGLTLNRVVD GKPQFQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVYFLKEGNFEADK NTKDEALLDMTAQVLAQEHSQPQLIVLHLMGSHPQACDRTQGKYETFVQSKETSCYLY TMTQTDDLLRKLYDQLRNSGSSFSLVYFSDHGLAFKERGKDVQYLAHDDKYQQNFQVP FMVISSDDKAHRVIKARRSANDFLGFFSQWTGIKAKEINIKYPFISEKKAGPIYITNF QLQKVDYNHLGTDIFDPKP" gene complement(852869..852997) /gene="mntS" /locus_tag="b4705" /gene_synonym="ECK4517; rybA" /db_xref="EcoGene:EG14500" /db_xref="GeneID:14678509" CDS complement(852869..852997) /gene="mntS" /locus_tag="b4705" /gene_synonym="ECK4517; rybA" /codon_start=1 /transl_table=11 /product="Mn(2)-response protein, MntR-repressed" /protein_id="YP_009029995.1" /db_xref="GI:635341463" /db_xref="UniProtKB/Swiss-Prot:P0DKB3" /db_xref="EcoGene:EG14500" /db_xref="GeneID:14678509" /translation="MNEFKRCMRVFSHSPFKVRLMLLSMLCDMVNNKPQQDKPSDK" gene 853183..853650 /gene="mntR" /locus_tag="b0817" /gene_synonym="ECK0807; JW0801; ybiQ" /db_xref="EcoGene:EG13322" /db_xref="GeneID:945437" CDS 853183..853650 /gene="mntR" /locus_tag="b0817" /gene_synonym="ECK0807; JW0801; ybiQ" /function="regulator; Not classified" /codon_start=1 /transl_table=11 /product="Mn(2+)-responsive manganese regulon transcriptional regulator" /protein_id="NP_415338.1" /db_xref="GI:16128785" /db_xref="ASAP:ABE-0002793" /db_xref="UniProtKB/Swiss-Prot:P0A9F1" /db_xref="EcoGene:EG13322" /db_xref="GeneID:945437" /translation="MSRRAGTPTAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVEL ISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLA QESRERHQIVENFLLVLGVSPEIARRDAEGMEHHVSEETLDAFRLFTQKHGAK" gene 853647..854765 /gene="ybiR" /locus_tag="b0818" /gene_synonym="ECK0808; JW0802" /db_xref="EcoGene:EG13323" /db_xref="GeneID:945438" CDS 853647..854765 /gene="ybiR" /locus_tag="b0818" /gene_synonym="ECK0808; JW0802" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="NP_415339.1" /db_xref="GI:16128786" /db_xref="ASAP:ABE-0002795" /db_xref="UniProtKB/Swiss-Prot:P75788" /db_xref="EcoGene:EG13323" /db_xref="GeneID:945438" /translation="MSLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHT IITLSGLMLLTKGVELSGYFDVLGRKMVRRFATERRLAMFMVLAAALLSTFLTNDVAL FIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFI AQMAPLAGAMMLTLLLLCWCCFPGKAMQYHTGVQTPEWKPRLVWSCLGLYIVFLTALE FKQELWGLVIVAAGFALLARRVVLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLGNVS HLSEPGLWLTAIGLSQVISNVPSTILLLNYVPPSLLLVWAVNVGGFGLLPGSLANLIA LRMANDRRIWWRFHLYSIPMLLWAALVGYVLLVILPAN" gene complement(854824..855744) /gene="ldtB" /locus_tag="b0819" /gene_synonym="ECK0809; JW0803; ybiS" /db_xref="EcoGene:EG13324" /db_xref="GeneID:945441" CDS complement(854824..855744) /gene="ldtB" /locus_tag="b0819" /gene_synonym="ECK0809; JW0803; ybiS" /function="enzyme; Murein sacculus, peptidoglycan" /codon_start=1 /transl_table=11 /product="L,D-transpeptidase linking Lpp to murein" /protein_id="NP_415340.1" /db_xref="GI:16128787" /db_xref="ASAP:ABE-0002797" /db_xref="UniProtKB/Swiss-Prot:P0AAX8" /db_xref="EcoGene:EG13324" /db_xref="GeneID:945441" /translation="MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVIT IPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIV INSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE YRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDI KFLFEKVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKS VQTVTGQPDVDQVVLDEAIKNRSGMPVRLN" gene 855963..857555 /gene="ybiT" /locus_tag="b0820" /gene_synonym="ECK0810; JW0804" /db_xref="EcoGene:EG13325" /db_xref="GeneID:945440" CDS 855963..857555 /gene="ybiT" /locus_tag="b0820" /gene_synonym="ECK0810; JW0804" /function="putative factor; Not classified" /GO_component="GO:0005737 - cytoplasm" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="ABC-F family putative regulatory ATPase" /protein_id="NP_415341.1" /db_xref="GI:16128788" /db_xref="ASAP:ABE-0002801" /db_xref="UniProtKB/Swiss-Prot:P0A9U3" /db_xref="EcoGene:EG13325" /db_xref="GeneID:945440" /translation="MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFM KILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRI YALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGW KLRVLLAQALFADPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMV CTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANA SKSRQATSRARQIDKIKLEEVKASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPL FKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWSENARIGYYAQDHE YEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFG KLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILEI TPERVIDFSGNYEDYLRSKGIE" repeat_region 857616..857713 /note="RIP79 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(857796..859061) /gene="ybiU" /locus_tag="b0821" /gene_synonym="ECK0811; JW0805" /db_xref="EcoGene:EG13326" /db_xref="GeneID:945439" CDS complement(857796..859061) /gene="ybiU" /locus_tag="b0821" /gene_synonym="ECK0811; JW0805" /codon_start=1 /transl_table=11 /product="DUF1479 family protein" /protein_id="NP_415342.1" /db_xref="GI:16128789" /db_xref="ASAP:ABE-0002804" /db_xref="UniProtKB/Swiss-Prot:P75791" /db_xref="EcoGene:EG13326" /db_xref="GeneID:945439" /translation="MASTFTSDTLPADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIA TRVAEINALKAQGDAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGW DQSMLDYLDRNRFDEVYKGPGDNFFGTLSASRPEIYPIYWSQAQMQARQSEEMANAQS FLNRLWTFESDGKQWFNPDVSVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQ RVFANVFNGNLAQYDPWHAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLL HVVPIPEAMAYVLLRPLLDDVPEDELCGVAPGRVLPVSEQWHPLLIEALTSIPKLEAG DSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYAHKVKAALEKGASPGDFP REDYETNWEGRFTLADLNIHGKRALGMDV" gene complement(859213..860028) /gene="ybiV" /locus_tag="b0822" /gene_synonym="ECK0812; JW0806; supH" /db_xref="EcoGene:EG13327" /db_xref="GeneID:945432" CDS complement(859213..860028) /gene="ybiV" /locus_tag="b0822" /gene_synonym="ECK0812; JW0806; supH" /codon_start=1 /transl_table=11 /product="sugar phosphatase; fructose-1-P/ribose-5-P/glucose-6-P phosphatase" /protein_id="NP_415343.1" /db_xref="GI:16128790" /db_xref="ASAP:ABE-0002807" /db_xref="UniProtKB/Swiss-Prot:P75792" /db_xref="EcoGene:EG13327" /db_xref="GeneID:945432" /translation="MSVKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVAS GNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQL NFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPL VIDKLHVALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGN DAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTSPFNS" gene complement(860174..862606) /gene="ybiW" /locus_tag="b0823" /gene_synonym="ECK0813; JW0807; pflF" /db_xref="EcoGene:EG13328" /db_xref="GeneID:945444" CDS complement(860174..862606) /gene="ybiW" /locus_tag="b0823" /gene_synonym="ECK0813; JW0807; pflF" /function="putative enzyme; Not classified" /GO_process="GO:0006113 - fermentation" /codon_start=1 /transl_table=11 /product="putative pyruvate formate lyase" /protein_id="NP_415344.1" /db_xref="GI:16128791" /db_xref="ASAP:ABE-0002810" /db_xref="UniProtKB/Swiss-Prot:P75793" /db_xref="EcoGene:EG13328" /db_xref="GeneID:945444" /translation="MTTLKLDTLSDRIKAHKNALVHIVKPPVCTERAQHYTEMYQQHL DKPIPVRRALALAHHLANRTIWIKHDELIIGNQASEVRAAPIFPEYTVSWIEKEIDDL ADRPGAGFAVSEENKRVLHEVCPWWRGQTVQDRCYGMFTDEQKGLLATGIIKAEGNMT SGDAHLAVNFPLLLEKGLDGLREEVAERRSRINLTVLEDLHGEQFLKAIDIVLVAVSE HIERFAALAREMAATETRESRRDELLAMAENCDLIAHQPPQTFWQALQLCYFIQLILQ IESNGHSVSFGRMDQYLYPYYRRDVELNQTLDREHAIEMLHSCWLKLLEVNKIRSGSH SKASAGSPLYQNVTIGGQNLVDGQPMDAVNPLSYAILESCGRLRSTQPNLSVRYHAGM SNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYAAIGCIETAVGGKW GYRCTGMSFINFARVMLAALEGGHDATSGKVFLPQEKALSAGNFNNFDEVMDAWDTQI RYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGI ANLGNSLAAVKKLVFEQGAIGQQQLAAALADDFDGLTHEQLRQRLINGAPKYGNDDDT VDTLLARAYQTYIDELKQYHNPRYGRGPVGGNYYAGTSSISANVPFGAQTMATPDGRK AHTPLAEGASPASGTDHLGPTAVIGSVGKLPTAAILGGVLLNQKLNPATLENESDKQK LMILLRTFFEVHKGWHIQYNIVSRETLLDAKKHPDQYRDLVVRVAGYSAFFTALSPDA QDDIIARTEHML" gene complement(862612..863511) /gene="ybiY" /locus_tag="b0824" /gene_synonym="ECK0814; JW0808; pflE" /db_xref="EcoGene:EG13470" /db_xref="GeneID:945445" CDS complement(862612..863511) /gene="ybiY" /locus_tag="b0824" /gene_synonym="ECK0814; JW0808; pflE" /function="putative enzyme; Not classified" /GO_process="GO:0009061 - anaerobic respiration; GO:0006464 - protein modification process" /codon_start=1 /transl_table=11 /product="putative pyruvate formate lyase activating enzyme" /protein_id="NP_415345.2" /db_xref="GI:226524704" /db_xref="ASAP:ABE-0002812" /db_xref="UniProtKB/Swiss-Prot:P75794" /db_xref="EcoGene:EG13470" /db_xref="GeneID:945445" /translation="MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARTQDL LYDARLCLEGCELCAKAAPEVIERALNGLLIHREKLTPEHLTALTDCCPTQALTVCGE VKSVEEIMTTVLRDKPFYDRSGGGLTLSGGEPFMQPEMAMALLQASHEAGIHTAVETC LHVPWKYIAPSLPYIDLFLADLKHVADAPFKQWTDGNAARVLDNLKKLAAAGKKIIIR VPLIQGFNADETSVKAITDFAADELHVGEIHFLPYHTLGINKYHLLNLPYDAPEKPLD APELLDFAQQYACQKGLTATLRG" gene 863642..864304 /gene="fsaA" /locus_tag="b0825" /gene_synonym="ECK0815; JW5109; mipB; ybiZ" /db_xref="EcoGene:EG13471" /db_xref="GeneID:945449" CDS 863642..864304 /gene="fsaA" /locus_tag="b0825" /gene_synonym="ECK0815; JW5109; mipB; ybiZ" /EC_number="4.1.2.-" /experiment="N-terminus verified by Edman degradation: PMID 11120740" /note="fructose-6-phosphate aldolase" /codon_start=1 /transl_table=11 /product="fructose-6-phosphate aldolase 1" /protein_id="NP_415346.4" /db_xref="GI:90111174" /db_xref="ASAP:ABE-0002818" /db_xref="UniProtKB/Swiss-Prot:P78055" /db_xref="EcoGene:EG13471" /db_xref="GeneID:945449" /translation="MELYLDTSDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLDVVLP QLHEAMGGQGRLFAQVMATTAEGMVNDALKLRSIIADIVVKVPVTAEGLAAIKMLKAE GIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLHQLLKMHAPQA KVLAASFKTPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDWQGAFGRT SI" repeat_region 864333..864370 /note="REP80 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(864380..865129) /gene="moeB" /locus_tag="b0826" /gene_synonym="chlN; ECK0816; JW0810" /db_xref="EcoGene:EG10154" /db_xref="GeneID:945452" CDS complement(864380..865129) /gene="moeB" /locus_tag="b0826" /gene_synonym="chlN; ECK0816; JW0810" /function="enzyme; Biosynthesis of cofactors, carriers: Molybdopterin" /GO_process="GO:0006777 - Mo-molybdopterin cofactor biosynthetic process" /note="molybdopterin biosynthesis" /codon_start=1 /transl_table=11 /product="molybdopterin synthase sulfurylase" /protein_id="NP_415347.1" /db_xref="GI:16128794" /db_xref="ASAP:ABE-0002820" /db_xref="UniProtKB/Swiss-Prot:P12282" /db_xref="EcoGene:EG10154" /db_xref="GeneID:945452" /translation="MAELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGC AASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIA ITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQ ITVFTYQDGEPCYRCLSRLFGENALTCVEAGVMAPLIGVIGSLQAMEAIKMLAGYGKP ASGKIVMYDAMTCQFREMKLMRNPGCEVCGQ" gene complement(865129..866364) /gene="moeA" /locus_tag="b0827" /gene_synonym="bisB; chlE; ECK0817; JW0811; narE" /db_xref="EcoGene:EG10153" /db_xref="GeneID:945454" CDS complement(865129..866364) /gene="moeA" /locus_tag="b0827" /gene_synonym="bisB; chlE; ECK0817; JW0811; narE" /function="enzyme; Biosynthesis of cofactors, carriers: Molybdopterin" /GO_process="GO:0006777 - Mo-molybdopterin cofactor biosynthetic process" /note="molybdopterin biosynthesis" /codon_start=1 /transl_table=11 /product="molybdopterin molybdenumtransferase; molybdopterin biosynthesis protein" /protein_id="NP_415348.1" /db_xref="GI:16128795" /db_xref="ASAP:ABE-0002823" /db_xref="UniProtKB/Swiss-Prot:P12281" /db_xref="EcoGene:EG10153" /db_xref="GeneID:945454" /translation="MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDV VSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGA PVPEGCEAVVMQEQTEQMDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAE LPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGC EVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKL AIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVR TASRLKKTPGRLDFQRGVLQRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGN VEVGEWVEVEPFNALFGGL" gene 866568..867533 /gene="iaaA" /locus_tag="b0828" /gene_synonym="ECK0818; JW0812; spt; ybiK" /db_xref="EcoGene:EG12407" /db_xref="GeneID:945456" CDS 866568..867533 /gene="iaaA" /locus_tag="b0828" /gene_synonym="ECK0818; JW0812; spt; ybiK" /EC_number="3.5.1.1" /function="orf; Not classified" /GO_process="GO:0009063 - cellular amino acid catabolic process" /note="putative asparaginase" /codon_start=1 /transl_table=11 /product="Isoaspartyl peptidase" /protein_id="NP_415349.1" /db_xref="GI:16128796" /db_xref="ASAP:ABE-0002828" /db_xref="UniProtKB/Swiss-Prot:P37595" /db_xref="EcoGene:EG12407" /db_xref="GeneID:945456" /translation="MGKAVIAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLE AGESALDVVTEAVRLLEECPLFNAGIGAVFTRDETHELDACVMDGNTLKAGAVAGVSH LRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSPEIFSTSLRYEQLLAARKEG ATVLDHSGAPLDEKQKMGTVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGC YANNASVAVSCTGTGEVFIRALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGG LIAIDHEGNVALPFNTEGMYRAWGYAGDTPTTGIYREKGDTVATQ" gene 867520..869391 /gene="gsiA" /locus_tag="b0829" /gene_synonym="ECK0819; JW5897; yliA" /db_xref="EcoGene:EG13472" /db_xref="GeneID:945457" CDS 867520..869391 /gene="gsiA" /locus_tag="b0829" /gene_synonym="ECK0819; JW5897; yliA" /function="putative transport; Not classified" /GO_component="GO:0005737 - cytoplasm" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="glutathione ABC transporter ATPase" /protein_id="NP_415350.2" /db_xref="GI:145698235" /db_xref="ASAP:ABE-0002830" /db_xref="UniProtKB/Swiss-Prot:P75796" /db_xref="EcoGene:EG13472" /db_xref="GeneID:945457" /translation="MPHSDELDAGNVLAVENLNIAFMQDQQKIAAVRNLSFSLQRGET LAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLQRRSREVIELSEQNAAQMRHVR GADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQNASREEAMVEAKRMLDQVRIPEAQT ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM SMGVIFITHDMGVVAEIADRVLVMYQGEAVETGTVEQIFHAPQHPYTRALLAAVPQLG AMKGLDYPRRFPLISLEHPAKQAPPIEQKTVVDGEPVLRVRNLVTRFPLRSGLLNRVT REVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS PGKLQALRRDIQFIFQDPYASLDPRQTIGDSIIEPLRVHGLLPGKDAAARVAWLLERV GLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD LQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLLAA VPVAEPSRQRPQRVLLSDDLPSNIHLRGEEVAAVSLQCVGPGHYVAQPQSEYAFMRR" gene 869411..870949 /gene="gsiB" /locus_tag="b0830" /gene_synonym="ECK0820; JW5111; yliB" /db_xref="EcoGene:EG13473" /db_xref="GeneID:945459" CDS 869411..870949 /gene="gsiB" /locus_tag="b0830" /gene_synonym="ECK0820; JW5111; yliB" /function="putative transport; Not classified" /GO_component="GO:0042597 - periplasmic space" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="glutathione ABC transporter periplasmic binding protein" /protein_id="NP_415351.1" /db_xref="GI:16128798" /db_xref="ASAP:ABE-0002832" /db_xref="UniProtKB/Swiss-Prot:P75797" /db_xref="EcoGene:EG13473" /db_xref="GeneID:945459" /translation="MARAVHRSGLVALGIATALMASCAFAAKDVVVAVGSNFTTLDPY DANDTLSQAVAKSFYQGLFGLDKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGT DFNAAAVKANLDRASDPANHLKRYNLYKNIAKTEAIDPTTVKITLKQPFSAFINILAH PATAMISPAALEKYGKEIGFYPVGTGPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSI TWRPVADNNTRAAMLQTGEAQFAFPIPYEQATLLEKNKNIELMASPSIMQRYISMNVT QKPFDNPKVREALNYAINRPALVKVAFAGYATPATGVVPPSIAYAQSYKPWPYDPVKA RELLKEAGYPNGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEV EGKGQKESGVRMFYTGWSASTGEADWALSPLFASQNWPPTLFNTAFYSNKQVDDFLAQ ALKTNDPAEKTRLYKAAQDIIWQESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFSFED ADLQ" gene 870967..871887 /gene="gsiC" /locus_tag="b0831" /gene_synonym="ECK0821; JW0815; yliC" /db_xref="EcoGene:EG13474" /db_xref="GeneID:945460" CDS 870967..871887 /gene="gsiC" /locus_tag="b0831" /gene_synonym="ECK0821; JW0815; yliC" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane" /note="putative transport system permease protein" /codon_start=1 /transl_table=11 /product="glutathione ABC transporter permease" /protein_id="NP_415352.1" /db_xref="GI:16128799" /db_xref="ASAP:ABE-0002834" /db_xref="UniProtKB/Swiss-Prot:P75798" /db_xref="EcoGene:EG13474" /db_xref="GeneID:945460" /translation="MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEAD AQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLT ITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELG WLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWV VLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQA EILLFSLEFILINLVVDVLYAAINPAIRYK" gene 871890..872801 /gene="gsiD" /locus_tag="b0832" /gene_synonym="ECK0822; JW0816; yliD" /db_xref="EcoGene:EG13475" /db_xref="GeneID:945461" CDS 871890..872801 /gene="gsiD" /locus_tag="b0832" /gene_synonym="ECK0822; JW0816; yliD" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport system permease protein" /codon_start=1 /transl_table=11 /product="glutathione ABC transporter permease" /protein_id="NP_415353.1" /db_xref="GI:16128800" /db_xref="ASAP:ABE-0002836" /db_xref="UniProtKB/Swiss-Prot:P75799" /db_xref="EcoGene:EG13475" /db_xref="GeneID:945461" /translation="MRLFNWRRQAVLNAMPLVKPDQVRTPWHEFWRRFRRQHMAMTAA LFVILLIVVAIFARWIAPYDAENYFDYDNLNNGPSLQHWFGVDSLGRDIFSRVLVGAQ ISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMRICDVLFAFPGILLAIAVVAVL GSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDMTVLLRHILPGT VSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHVAVFPA LAIFLTVLAFNLLGDGLRDALDPKIKG" gene 872979..875327 /gene="yliE" /locus_tag="b0833" /gene_synonym="ECK0823; JW0817" /db_xref="EcoGene:EG13476" /db_xref="GeneID:945462" CDS 872979..875327 /gene="yliE" /locus_tag="b0833" /gene_synonym="ECK0823; JW0817" /codon_start=1 /transl_table=11 /product="putative membrane-anchored cyclic-di-GMP phosphodiesterase" /protein_id="NP_415354.1" /db_xref="GI:16128801" /db_xref="ASAP:ABE-0002839" /db_xref="UniProtKB/Swiss-Prot:P75800" /db_xref="EcoGene:EG13476" /db_xref="GeneID:945462" /translation="MLSLYEKIKIRLIILFLLAALSFIGLFFIINYQLVSERAVKRAD SRFELIQKNVGYFFKDIERSALTLKDSLYLLKNTEEIQRAVILKMEMMPFLDSVGLVL DDNKYYLFSRRANDKIVVYHQEQVNGPLVDESGRVIFADFNPSKRPWSVASDDSNNSW NPAYNCFDRPGKKCISFTLHINGKDHDLLAVDKIHVDLNWRYLNEYLDQISANDEVLF LKQGHEIIAKNQLAREKLIIYNSEGNYNIIDSVDTEYIEKTSAVPNNALFEIYFYYPG GNLLNASDKLFYLPFAFIIIVLLVVYLMTTRVFRRQFSEMTELVNTLAFLPDSTDQIE ALKIREGDAKEIISIKNSIAEMKDAEIERSNKLLSLISYDQESGFIKNMAIIESNNNQ YLAVGIIKLCGLEAVEAVFGVDERNKIVRKLCQRIAEKYAQCCDIVTFNADLYLLLCR ENVQTFTRKIAMVNDFDSSFGYRNLRIHKSAICEPLQGENAWSYAEKLKLAISSIRDH MFSEFIFCDDAKLNEIEENIWIARNIRHAMEIGELFLVYQPIVDINTRAILGAEALCR WVSAERGIISPLKFITIAEDIGFINELGYQIIKTAMGEFRHFSQRASLKDDFLLHINV SPWQLNEPHFHERFTTIMKENGLKANSLCVEITETVIERINEHFYLNIEQLRKQGVRI SIDDFGTGLSNLKRFYEINPDSIKVDSQFTGDIFGTAGKIVRIIFDLARYNRIPVIAE GVESEDVARELIKLGCVQAQGYLYQKPMPFSAWDKSGKLVKE" gene 875335..876663 /gene="yliF" /locus_tag="b0834" /gene_synonym="ECK0824; JW0818" /db_xref="EcoGene:EG13477" /db_xref="GeneID:945463" CDS 875335..876663 /gene="yliF" /locus_tag="b0834" /gene_synonym="ECK0824; JW0818" /codon_start=1 /transl_table=11 /product="putative membrane-anchored diguanylate cyclase" /protein_id="NP_415355.1" /db_xref="GI:16128802" /db_xref="ASAP:ABE-0002841" /db_xref="UniProtKB/Swiss-Prot:P75801" /db_xref="EcoGene:EG13477" /db_xref="GeneID:945463" /translation="MSRINKFVLTVSLLIFIMISAVACGIYTQMVKERVYSLKQSVID TAFAVANIAEYRRSVAIDLINTLNPTEEQLLVGLRTAYADSVSPSYLYDVGPYLISSD ECIQVKEFEKNYCADIMQVVKYRHVKNTGFISFDGKTFVYYLYPVTHNRSLIFLLGLE RFSLLSKSLAMDSENLMFSLFKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPTGLYVF AYKKDVYLRVCTLIIFFAALVAVISGASCLYLVRRVINRGIVEKEAIINNHFERVLDG GLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNI NDTFGHLLGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI VHFQVGSINLSTSIGVAHSNECPTVERLKMLADERLYKSKKNGRAQISWQ" gene complement(876710..878035) /gene="rimO" /locus_tag="b0835" /gene_synonym="ECK0825; JW0819; yliG" /db_xref="EcoGene:EG13478" /db_xref="GeneID:945465" CDS complement(876710..878035) /gene="rimO" /locus_tag="b0835" /gene_synonym="ECK0825; JW0819; yliG" /codon_start=1 /transl_table=11 /product="ribosomal protein S12 methylthiotransferase" /protein_id="NP_415356.1" /db_xref="GI:16128803" /db_xref="ASAP:ABE-0002843" /db_xref="UniProtKB/Swiss-Prot:P0AEI4" /db_xref="EcoGene:EG13478" /db_xref="GeneID:945465" /translation="MSKVTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDD ADMVIVNTCGFIDSAVQESLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITG PHSYEQVLEHVHHYVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIP SMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTS MVSLCEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMK RPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCF KYSPVEGADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDE EGAIGRSMADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV" gene 878248..878631 /gene="bssR" /locus_tag="b0836" /gene_synonym="ECK0826; JW0820; yliH" /db_xref="EcoGene:EG13479" /db_xref="GeneID:945466" CDS 878248..878631 /gene="bssR" /locus_tag="b0836" /gene_synonym="ECK0826; JW0820; yliH" /function="putative factor; Not classified" /note="putative receptor" /codon_start=1 /transl_table=11 /product="repressor of biofilm formation by indole transport regulation" /protein_id="NP_415357.1" /db_xref="GI:16128804" /db_xref="ASAP:ABE-0002849" /db_xref="UniProtKB/Swiss-Prot:P0AAY1" /db_xref="EcoGene:EG13479" /db_xref="GeneID:945466" /translation="MFVDRQRIDLLNRLIDARVDLAAYVQLRKAKGYMSVSESNHLRD NFFKLNRELHDKSLRLNLHLDQEEWSALHHAEEALATAAVCLMSGHHDCPTVITVNAD KLENCLMSLTLSIQSLQKHAMLEKA" gene 878742..879857 /gene="yliI" /locus_tag="b0837" /gene_synonym="ECK0827; JW0821" /db_xref="EcoGene:EG13480" /db_xref="GeneID:945467" CDS 878742..879857 /gene="yliI" /locus_tag="b0837" /gene_synonym="ECK0827; JW0821" /function="putative enzyme; Not classified" /note="putative dehydrogenase" /codon_start=1 /transl_table=11 /product="soluble aldose sugar dehydrogenase" /protein_id="NP_415358.1" /db_xref="GI:16128805" /db_xref="ASAP:ABE-0002852" /db_xref="UniProtKB/Swiss-Prot:P75804" /db_xref="EcoGene:EG13480" /db_xref="GeneID:945467" /translation="MHRQSFFLVPLICLSSALWAAPATVNVEVLQDKLDHPWALAFLP DNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWL SYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYL FIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGARAEIWSYGIRNPQG MAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAG TEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI LTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVSPRN" gene complement(879854..880480) /gene="gstB" /locus_tag="b0838" /gene_synonym="ECK0828; JW0822; yliJ" /db_xref="EcoGene:EG13481" /db_xref="GeneID:945469" CDS complement(879854..880480) /gene="gstB" /locus_tag="b0838" /gene_synonym="ECK0828; JW0822; yliJ" /function="enzyme; Biosynthesis of cofactors, carriers: Thioredoxin, glutaredoxin, glutathione" /note="putative transferase" /codon_start=1 /transl_table=11 /product="glutathione S-transferase" /protein_id="NP_415359.4" /db_xref="GI:90111175" /db_xref="ASAP:ABE-0002855" /db_xref="UniProtKB/Swiss-Prot:P0ACA7" /db_xref="EcoGene:EG13481" /db_xref="GeneID:945469" /translation="MITLWGRNNSTNVKKVLLTLEELELPYEQILAGREFGINHDADF LAMNPNGLVPLLRDDESDLILWESNAIVRYLAAQYGQKRLWIDSPARRAEAEKWMDWA NQTLSNAHRGILMGLVRTPPEERDQAAIDASCKECDALFALLDAELAKVKWFSGDEFG VGDIAIAPFIYNLFNVGLTWTPRPNLQRWYQQLTERPAVRKVVMIPVS" gene 880727..881929 /gene="dacC" /locus_tag="b0839" /gene_synonym="ECK0829; JW0823" /db_xref="EcoGene:EG10203" /db_xref="GeneID:945455" CDS 880727..881929 /gene="dacC" /locus_tag="b0839" /gene_synonym="ECK0829; JW0823" /EC_number="3.4.16.4" /function="enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0042493 - response to drug" /note="D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a" /protein_id="NP_415360.1" /db_xref="GI:16128807" /db_xref="ASAP:ABE-0002860" /db_xref="UniProtKB/Swiss-Prot:P08506" /db_xref="EcoGene:EG10203" /db_xref="GeneID:945455" /translation="MTQYSSLLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWIL MDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGN PALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAK KLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQP NRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEK LLTWGFRFFETVTPIKPDATFVTQRVWFGDKSEVNLGAGEAGSVTIPRGQLKNLKASY TLTEPQLTAPLKKGQVVGTIDFQLNGKSIEQRPLIVMENVEEGGFFGRVWDFVMMKFH QWFGSWFS" repeat_region 881940..881966 /note="REP81 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(881976..882734) /gene="deoR" /locus_tag="b0840" /gene_synonym="ECK0830; JW0824; nucR" /db_xref="EcoGene:EG10223" /db_xref="GeneID:945453" CDS complement(881976..882734) /gene="deoR" /locus_tag="b0840" /gene_synonym="ECK0830; JW0824; nucR" /function="regulator; Salvage of nucleosides and nucleotides" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion; GO:0006350 - transcription" /note="transcriptional repressor for deo operon, tsx, nupG" /codon_start=1 /transl_table=11 /product="deoxyribose-5-phosphate-inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx" /protein_id="NP_415361.1" /db_xref="GI:16128808" /db_xref="ASAP:ABE-0002862" /db_xref="UniProtKB/Swiss-Prot:P0ACK5" /db_xref="EcoGene:EG10223" /db_xref="GeneID:945453" /translation="METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNN HSAPVVLLGGYIVLEPRSASHYLLSDQKSRLVEEKRRAAKLAATLVEPDQTLFFDCGT TTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPIDFQQT LNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPA RMGDLKRFDIVVSDCCPEDEYVKYAQTQRIKLMY" gene complement(882792..883388) /gene="ybjG" /locus_tag="b0841" /gene_synonym="bcrC; ECK0831; JW5112" /db_xref="EcoGene:EG13676" /db_xref="GeneID:945450" CDS complement(882792..883388) /gene="ybjG" /locus_tag="b0841" /gene_synonym="bcrC; ECK0831; JW5112" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="undecaprenyl pyrophosphate phosphatase" /protein_id="NP_415362.1" /db_xref="GI:16128809" /db_xref="ASAP:ABE-0002865" /db_xref="UniProtKB/Swiss-Prot:P75806" /db_xref="EcoGene:EG13676" /db_xref="GeneID:945450" /translation="MLENLNLSLFSLINATPDSAPWMISLAIFIAKDLITVVPLLAVV LWLWGLTAQRQLVIKIAIALAVSLFVSWTMGHLFPHDRPFVENIGYNFLHHAADDSFP SDHGTVIFTFALAFLCWHRLWSGSLLMVLAVVIAWSRVYLGVHWPLDMLGGLLAGMIG CLSAQIIWQAMGHKLYQRLQSWYRVCFALPIRKGWVRD" gene 883673..884905 /gene="mdfA" /locus_tag="b0842" /gene_synonym="cmlA; cmr; ECK0832; JW0826" /db_xref="EcoGene:EG13696" /db_xref="GeneID:945448" CDS 883673..884905 /gene="mdfA" /locus_tag="b0842" /gene_synonym="cmlA; cmr; ECK0832; JW0826" /function="transport; Transport of small molecules: Other" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042493 - response to drug" /note="proton motive force efflux pump" /codon_start=1 /transl_table=11 /product="multidrug efflux system protein" /protein_id="NP_415363.1" /db_xref="GI:16128810" /db_xref="ASAP:ABE-0002871" /db_xref="UniProtKB/Swiss-Prot:P0AEY8" /db_xref="EcoGene:EG13696" /db_xref="GeneID:945448" /translation="MQNKLASGARLGRQALLFPLCLVLYEFSTYIGNDMIQPGMLAVV EQYQAGIDWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVVWFIVTCLAILLA QNIEQFTLLRFLQGISLCFIGAVGYAAIQESFEEAVCIKITALMANVALIAPLLGPLV GAAWIHVLPWEGMFVLFAALAAISFFGLQRAMPETATRIGEKLSLKELGRDYKLVLKN GRFVAGALALGFVSLPLLAWIAQSPIIIITGEQLSSYEYGLLQVPIFGALIAGNLLLA RLTSRRTVRSLIIMGGWPIMIGLLVAAAATVISSHAYLWMTAGLSIYAFGIGLANAGL VRLTLFASDMSKGTVSAAMGMLQMLIFTVGIEISKHAWLNGGNGLFNLFNLVNGILWL SLMVIFLKDKQMGNSHEG" gene complement(884946..885230) /gene="ybjH" /locus_tag="b0843" /gene_synonym="ECK0833; JW0827" /db_xref="EcoGene:EG13677" /db_xref="GeneID:945447" CDS complement(884946..885230) /gene="ybjH" /locus_tag="b0843" /gene_synonym="ECK0833; JW0827" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_415364.1" /db_xref="GI:16128811" /db_xref="ASAP:ABE-0002873" /db_xref="UniProtKB/Swiss-Prot:P0AAY4" /db_xref="EcoGene:EG13677" /db_xref="GeneID:945447" /translation="MIMKNCLLLGALLMGFTGVAMAQSVTVDVPSGYKVVVVPDSVSV PQAVSVATVPQTVYVAPAPAPAYRPHPYVRHLASVGEGMVIEHQIDDHHH" gene complement(885316..886131) /gene="ybjI" /locus_tag="b0844" /gene_synonym="ECK0834; JW5113" /db_xref="EcoGene:EG13678" /db_xref="GeneID:945470" CDS complement(885316..886131) /gene="ybjI" /locus_tag="b0844" /gene_synonym="ECK0834; JW5113" /EC_number="3.1.3.-" /function="enzyme; Biosynthesis of cofactors, carriers: Riboflavin" /codon_start=1 /transl_table=11 /product="5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase; pyrimidine phosphatase; riboflavin synthesis" /protein_id="NP_415365.4" /db_xref="GI:90111176" /db_xref="ASAP:ABE-0002877" /db_xref="UniProtKB/Swiss-Prot:P75809" /db_xref="EcoGene:EG13678" /db_xref="GeneID:945470" /translation="MSIKLIAVDMDGTFLSDQKTYNRERFMAQYQQMKAQGIRFVVAS GNQYYQLISFFPEIANEIAFVAENGGWVVSEGKDVFNGELSKDAFATVVEHLLTRPEV EIIACGKNSAYTLKKYDDAMKTVAEMYYHRLEYVDNFDNLEDIFFKFGLNLSDELIPQ VQKALHEAIGDIMVSVHTGNGSIDLIIPGVHKANGLRQLQKLWGIDDSEVVVFGDGGN DIEMLRQAGFSFAMENAGSAVVAAAKYRAGSNNREGVLDVIDKVLKHEAPFDQ" gene complement(886131..887339) /gene="ybjJ" /locus_tag="b0845" /gene_synonym="ECK0835; JW0829" /db_xref="EcoGene:EG13679" /db_xref="GeneID:945471" CDS complement(886131..887339) /gene="ybjJ" /locus_tag="b0845" /gene_synonym="ECK0835; JW0829" /function="putative regulator; Not classified" /note="putative DEOR-type transcriptional regulator" /codon_start=1 /transl_table=11 /product="putative drug efflux MFS transporter, inner membrane protein" /protein_id="NP_415366.1" /db_xref="GI:16128813" /db_xref="ASAP:ABE-0002880" /db_xref="UniProtKB/Swiss-Prot:P75810" /db_xref="EcoGene:EG13679" /db_xref="GeneID:945471" /translation="MTVNSSRNALKRRTWALFMFFFLPGLLMASWATRTPAIRDILSV SIAEMGGVLFGLSIGSMSGILCSAWLVKRFGTRNVILVTMSCALIGMMILSLALWLTS PLLFAVGLGVFGASFGSAEVAINVEGAAVEREMNKTVLPMMHGFYSLGTLAGAGVGMA LTAFGVPATVHILLAALVGIAPIYIAIQAIPDGTGKNAADGTQHGEKGVPFYRDIQLL LIGVVVLAMAFAEGSANDWLPLLMVDGHGFSPTSGSLIYAGFTLGMTVGRFTGGWFID RYSRVAVVRASALMGALGIGLIIFVDSAWVAGVSVVLWGLGASLGFPLTISAASDTGP DAPTRVSVVATTGYLAFLVGPPLLGYLGEHYGLRSAMLVVLALVILAAIVAKAVAKPD TKTQTAMENS" gene 887423..887959 /gene="rcdA" /locus_tag="b0846" /gene_synonym="ECK0836; JW5114; rcdR; ybjK" /db_xref="EcoGene:EG13680" /db_xref="GeneID:945473" CDS 887423..887959 /gene="rcdA" /locus_tag="b0846" /gene_synonym="ECK0836; JW5114; rcdR; ybjK" /function="putative regulator; Not classified" /note="putative DEOR-type transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional regulator of csgD and ybiJI; autoregulator" /protein_id="NP_415367.1" /db_xref="GI:16128814" /db_xref="ASAP:ABE-0002885" /db_xref="UniProtKB/Swiss-Prot:P75811" /db_xref="EcoGene:EG13680" /db_xref="GeneID:945473" /translation="MRRANDPQRREKIIQATLEAVKLYGIHAVTHRKIATLAGVPLGS MTYYFSGIDELLLEAFSSFTEIMSRQYQAFFSDVSDAPGACQAITDMIYSSQVATPDN MELMYQLYALASRKPLLKTVMQNWMQRSQQTLEQWFEPGTARALDAFIEGMTLHFVTD RKPLSREEILRMVERVAG" gene complement(887976..888054) /gene="rybB" /locus_tag="b4417" /gene_synonym="ECK0837; JWR0227; p25" /db_xref="EcoGene:EG31137" /db_xref="GeneID:2847774" ncRNA complement(887976..888054) /ncRNA_class="antisense_RNA" /gene="rybB" /locus_tag="b4417" /gene_synonym="ECK0837; JWR0227; p25" /product="sRNA antisense regulator of ompC and ompW mRNA instability, Hfq-dependent" /note="identified in a large scale screen" /db_xref="ASAP:ABE-0047241" /db_xref="EcoGene:EG31137" /db_xref="GeneID:2847774" gene complement(888134..889819) /gene="ybjL" /locus_tag="b0847" /gene_synonym="ECK0838; JW0831" /db_xref="EcoGene:EG13681" /db_xref="GeneID:945474" CDS complement(888134..889819) /gene="ybjL" /locus_tag="b0847" /gene_synonym="ECK0838; JW0831" /function="putative transport; Not classified" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="NP_415368.1" /db_xref="GI:16128815" /db_xref="ASAP:ABE-0002887" /db_xref="UniProtKB/Swiss-Prot:P60869" /db_xref="EcoGene:EG13681" /db_xref="GeneID:945474" /translation="MNINVAELLNGNYILLLFVVLALGLCLGKLRLGSIQLGNSIGVL VVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGS ALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGMESRQLSLALDNLS LGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAY RVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYP DAHARLDPSFRNGKEVFDRDLLDMRIVTEEVVVKNHNAVGKRLAQLKLTDHGCFLNRV IRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFVI GLMIGMITFQFSTFSFGMGNAAGLLFAGIMLGFMRANHPTFGYIPQGALSMVKEFGLM VFMAGVGLSAGSGINNGLGAIGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRALLFGA MMGARTCAPAMEIISDTARSNIPALGYAGTYAIANVLLTLAGTIIVMVWPGLG" gene 890089..890466 /gene="ybjM" /locus_tag="b0848" /gene_synonym="ECK0839; JW0832" /db_xref="EcoGene:EG13682" /db_xref="GeneID:945477" CDS 890089..890466 /gene="ybjM" /locus_tag="b0848" /gene_synonym="ECK0839; JW0832" /codon_start=1 /transl_table=11 /product="inner membrane protein" /protein_id="NP_415369.1" /db_xref="GI:16128816" /db_xref="ASAP:ABE-0002891" /db_xref="UniProtKB/Swiss-Prot:P64439" /db_xref="EcoGene:EG13682" /db_xref="GeneID:945477" /translation="MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLF FILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFW CALGALCFLFISSLFKPQHRKNQ" gene complement(890496..890753) /gene="grxA" /locus_tag="b0849" /gene_synonym="ECK0840; grx; JW0833" /db_xref="EcoGene:EG10417" /db_xref="GeneID:945479" CDS complement(890496..890753) /gene="grxA" /locus_tag="b0849" /gene_synonym="ECK0840; grx; JW0833" /function="carrier; Biosynthesis of cofactors, carriers: Thioredoxin, glutaredoxin, glutathione" /experiment="N-terminus verified by Edman degradation: PMID 6352262" /note="glutaredoxin1 redox coenzyme for glutathione-dependent ribonucleotide reductase" /codon_start=1 /transl_table=11 /product="glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a)" /protein_id="NP_415370.1" /db_xref="GI:16128817" /db_xref="ASAP:ABE-0002893" /db_xref="UniProtKB/Swiss-Prot:P68688" /db_xref="EcoGene:EG10417" /db_xref="GeneID:945479" /translation="MQTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGIT KEDLQQKAGKPVETVPQIFVDQQHIGGYTDFAAWVKENLDA" gene 890913..891200 /gene="ybjC" /locus_tag="b0850" /gene_synonym="ECK0841; JW0834" /db_xref="EcoGene:EG12842" /db_xref="GeneID:945481" CDS 890913..891200 /gene="ybjC" /locus_tag="b0850" /gene_synonym="ECK0841; JW0834" /codon_start=1 /transl_table=11 /product="DUF1418 family protein" /protein_id="NP_415371.1" /db_xref="GI:16128818" /db_xref="ASAP:ABE-0002898" /db_xref="UniProtKB/Swiss-Prot:P46119" /db_xref="EcoGene:EG12842" /db_xref="GeneID:945481" /translation="MRAIGKLPKGVLILEFIGMMLLAVALLSVSDSLSLPEPFSRPEV QILMIFLGVLLMLPAAVVVILQVAKRLAPQLMNRPPQYSRSEREKDNDANH" gene 891184..891906 /gene="nfsA" /locus_tag="b0851" /gene_synonym="ECK0842; JW0835; mda18; mdaA; snrA; ybjB" /db_xref="EcoGene:EG11261" /db_xref="GeneID:945483" CDS 891184..891906 /gene="nfsA" /locus_tag="b0851" /gene_synonym="ECK0842; JW0835; mda18; mdaA; snrA; ybjB" /EC_number="1.-.-.-" /function="phenotype; Not classified" /GO_process="GO:0009061 - anaerobic respiration" /codon_start=1 /transl_table=11 /product="nitroreductase A, NADPH-dependent, FMN-dependent" /protein_id="NP_415372.1" /db_xref="GI:16128819" /db_xref="ASAP:ABE-0002900" /db_xref="UniProtKB/Swiss-Prot:P17117" /db_xref="EcoGene:EG11261" /db_xref="GeneID:945483" /translation="MTPTIELICGHRSIRHFTDEPISEAQREAIINSARATSSSSFLQ CSSIIRITDKALREELVTLTGGQKHVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLL LGVVDTAMMAQNALIAAESLGLGGVYIGGLRNNIEAVTKLLKLPQHVLPLFGLCLGWP ADNPDLKPRLPASILVHENSYQPLDKGALAQYDEQLAEYYLTRGSNNRRDTWSDHIRR TIIKESRPFILDYLHKQGWATR" gene 891967..892869 /gene="rimK" /locus_tag="b0852" /gene_synonym="ECK0843; JW0836; nek" /db_xref="EcoGene:EG10852" /db_xref="GeneID:945484" CDS 891967..892869 /gene="rimK" /locus_tag="b0852" /gene_synonym="ECK0843; JW0836; nek" /function="structural component; Ribosomes - maturation and modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="ribosomal protein S6 modification protein" /protein_id="NP_415373.1" /db_xref="GI:16128820" /db_xref="ASAP:ABE-0002903" /db_xref="UniProtKB/Swiss-Prot:P0C0U4" /db_xref="EcoGene:EG10852" /db_xref="GeneID:945484" /translation="MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPA ASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLR SMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAA ESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSNLHRGG AASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNASPGLEGIEKTTGI DIAGKMIRWIERHATTEYCLKTGG" gene 892957..893433 /gene="ybjN" /locus_tag="b0853" /gene_synonym="ECK0844; JW0837" /db_xref="EcoGene:EG13683" /db_xref="GeneID:945482" CDS 892957..893433 /gene="ybjN" /locus_tag="b0853" /gene_synonym="ECK0844; JW0837" /function="putative regulator; Not classified" /note="putative sensory transduction regulator" /codon_start=1 /transl_table=11 /product="negative regulator of motility; multicopy suppressor of coaA(Ts)" /protein_id="NP_415374.1" /db_xref="GI:16128821" /db_xref="ASAP:ABE-0002910" /db_xref="UniProtKB/Swiss-Prot:P0AAY6" /db_xref="EcoGene:EG13683" /db_xref="GeneID:945482" /translation="MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVF DAKIDLIDNTILFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVC QSLSVMQGVTYEQFAWFVRQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH" gene 893784..894896 /gene="potF" /locus_tag="b0854" /gene_synonym="ECK0845; JW0838" /db_xref="EcoGene:EG11629" /db_xref="GeneID:945480" CDS 893784..894896 /gene="potF" /locus_tag="b0854" /gene_synonym="ECK0845; JW0838" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0009310 - amine catabolic process; GO:0006596 - polyamine biosynthetic process; GO:0015847 - putrescine transport" /note="periplasmic putrescine-binding protein; permease protein" /codon_start=1 /transl_table=11 /product="putrescine ABC transporter periplasmic binding protein" /protein_id="NP_415375.1" /db_xref="GI:16128822" /db_xref="ASAP:ABE-0002913" /db_xref="UniProtKB/Swiss-Prot:P31133" /db_xref="EcoGene:EG11629" /db_xref="GeneID:945480" /translation="MTALNKKWLSGLVAGALMAVSVGTLAAEQKTLHIYNWSDYIAPD TVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLD KSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSW DLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLR PNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAF FDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPLVSAEVRENPG IYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVKSGK" gene 894991..896124 /gene="potG" /locus_tag="b0855" /gene_synonym="ECK0846; JW5818" /db_xref="EcoGene:EG11630" /db_xref="GeneID:945476" CDS 894991..896124 /gene="potG" /locus_tag="b0855" /gene_synonym="ECK0846; JW5818" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009310 - amine catabolic process; GO:0006596 - polyamine biosynthetic process; GO:0015847 - putrescine transport" /note="ATP-binding component of putrescine transport system" /codon_start=1 /transl_table=11 /product="putrescine ABC transporter ATPase" /protein_id="NP_415376.4" /db_xref="GI:90111177" /db_xref="ASAP:ABE-0002915" /db_xref="UniProtKB/Swiss-Prot:P31134" /db_xref="EcoGene:EG11630" /db_xref="GeneID:945476" /translation="MNDAIPRPQAKTRKALTPLLEIRNLTKSYDGQHAVDDVSLTIYK GEIFALLGASGCGKSTLLRMLAGFEQPSAGQIMLDGVDLSQVPPYLRPINMMFQSYAL FPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVAL ARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAG RIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLKERQEDGLVLDSPGLV HPLKVDADASVVDNVPVHVALRPEKIMLCEEPPANGCNFAVGEVIHIAYLGDLSVYHV RLKSGQMISAQLQNAHRHRKGLPTWGDEVRLCWEVDSCVVLTV" gene 896134..897087 /gene="potH" /locus_tag="b0856" /gene_synonym="ECK0847; JW0840" /db_xref="EcoGene:EG11631" /db_xref="GeneID:945475" CDS 896134..897087 /gene="potH" /locus_tag="b0856" /gene_synonym="ECK0847; JW0840" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009310 - amine catabolic process; GO:0006596 - polyamine biosynthetic process; GO:0015847 - putrescine transport" /note="putrescine transport protein; permease" /codon_start=1 /transl_table=11 /product="putrescine ABC transporter permease" /protein_id="NP_415377.1" /db_xref="GI:16128824" /db_xref="ASAP:ABE-0002917" /db_xref="UniProtKB/Swiss-Prot:P31135" /db_xref="EcoGene:EG11631" /db_xref="GeneID:945475" /translation="MSTLEPAAQSKPPGGFKLWLSQLQMKHGRKLVIALPYIWLILLF LLPFLIVFKISLAEMARAIPPYTELMEWADGQLSITLNLGNFLQLTDDPLYFDAYLQS LQVAAISTFCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKN NGVLNNFLLWLGVIDQPLTILHTNLAVYIGIVYAYVPFMVLPIYTALIRIDYSLVEAA LDLGARPLKTFFTVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQ EFFNNRDWPVASAVAIIMLLLLIVPIMWFHKHQQKSVGEHG" gene 897084..897929 /gene="potI" /locus_tag="b0857" /gene_synonym="ECK0848; JW0841" /db_xref="EcoGene:EG11632" /db_xref="GeneID:945485" CDS 897084..897929 /gene="potI" /locus_tag="b0857" /gene_synonym="ECK0848; JW0841" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009310 - amine catabolic process; GO:0006596 - polyamine biosynthetic process; GO:0015847 - putrescine transport" /note="putrescine transport protein; permease" /codon_start=1 /transl_table=11 /product="putrescine ABC transporter permease" /protein_id="NP_415378.1" /db_xref="GI:16128825" /db_xref="ASAP:ABE-0002919" /db_xref="UniProtKB/Swiss-Prot:P0AFL1" /db_xref="EcoGene:EG11632" /db_xref="GeneID:945485" /translation="MNNLPVVRSPWRIVILLLGFTFLYAPMLMLVIYSFNSSKLVTVW AGWSTRWYGELLRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVLVRFGRFRGSNGF AFMITAPLVMPDVITGLSLLLLFVALAHAIGWPADRGMLTIWLAHVTFCTAYVAVVIS SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFV SGPGATTLPMLVFSSVRMGVNPEINALATLILGAVGIVGFIAWYLMARAEKQRIRDIQ RARRG" gene 897989..898477 /gene="ybjO" /locus_tag="b0858" /gene_synonym="ECK0849; JW0842" /db_xref="EcoGene:EG13684" /db_xref="GeneID:945488" CDS 897989..898477 /gene="ybjO" /locus_tag="b0858" /gene_synonym="ECK0849; JW0842" /codon_start=1 /transl_table=11 /product="DUF2593 family inner membrane protein" /protein_id="NP_415379.1" /db_xref="GI:16128826" /db_xref="ASAP:ABE-0002922" /db_xref="UniProtKB/Swiss-Prot:P0AAZ0" /db_xref="EcoGene:EG13684" /db_xref="GeneID:945488" /translation="MEDETLGFFKKTSSSHARLNVPALVQVAALAIIMIRGLDVLMIF NTLGVRGIGEFIHRSVQTWSLTLVFLSSLVLVFIEIWCAFSLVKGRRWARWLYLLTQI TAASYLWAASLGYGYPELFSIPGESKREIFHSLMLQKLPDMLILMLLFVPSTSRRFFQ LQ" gene 898518..899645 /gene="rlmC" /locus_tag="b0859" /gene_synonym="ECK0850; JW0843; rumB; ybjF" /db_xref="EcoGene:EG13427" /db_xref="GeneID:947260" CDS 898518..899645 /gene="rlmC" /locus_tag="b0859" /gene_synonym="ECK0850; JW0843; rumB; ybjF" /EC_number="2.1.1.-" /function="enzyme; rRNA modification" /GO_process="GO:0009451 - RNA modification" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="23S rRNA m(5)U747 methyltransferase, SAM-dependent" /protein_id="NP_415380.1" /db_xref="GI:16128827" /db_xref="ASAP:ABE-0002924" /db_xref="UniProtKB/Swiss-Prot:P75817" /db_xref="EcoGene:EG13427" /db_xref="GeneID:947260" /translation="MQCALYDAGRCRSCQWIMQPIPEQLSAKTADLKNLLADFPVEEW CAPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALK PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHE QLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVA SQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIASEAIACAKQSAA ELGLTRLQFQALDSTQFATAQGDVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSC NAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTLLVKQ" repeat_region 899696..899793 /note="RIP82 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(899844..900575) /gene="artJ" /locus_tag="b0860" /gene_synonym="ECK0851; JW0844" /db_xref="EcoGene:EG11628" /db_xref="GeneID:948981" CDS complement(899844..900575) /gene="artJ" /locus_tag="b0860" /gene_synonym="ECK0851; JW0844" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006526 - arginine biosynthetic process" /note="arginine 3rd transport system periplasmic binding protein" /codon_start=1 /transl_table=11 /product="arginine ABC transporter periplasmic binding protein" /protein_id="NP_415381.1" /db_xref="GI:16128828" /db_xref="ASAP:ABE-0002927" /db_xref="UniProtKB/Swiss-Prot:P30860" /db_xref="EcoGene:EG11628" /db_xref="GeneID:948981" /translation="MKKLVLAALLASFTFGASAAEKINFGVSATYPPFESIGANNEIV GFDIDLAKALCKQMQAECTFTNHAFDSLIPSLKFRKYDAVISGMDITPERSKQVSFTT PYYENSAVVIAKKDTYKTFADLKGKRIGMENGTTHQKYIQDQHPEVKTVSYDSYQNAF IDLKNGRIDGVFGDTAVVNEWLKTNPQLGVATEKVTDPQYFGTGLGIAVRPDNKALLE KLNNALAAIKADGTYQKISDQWFPQ" repeat_region 900749..900835 /note="REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(900866..901534) /gene="artM" /locus_tag="b0861" /gene_synonym="ECK0852; JW0845" /db_xref="EcoGene:EG11627" /db_xref="GeneID:949066" CDS complement(900866..901534) /gene="artM" /locus_tag="b0861" /gene_synonym="ECK0852; JW0845" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006526 - arginine biosynthetic process; GO:0009063 - cellular amino acid catabolic process" /note="arginine 3rd transport system permease protein; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="arginine ABC transporter permease" /protein_id="NP_415382.1" /db_xref="GI:16128829" /db_xref="ASAP:ABE-0002931" /db_xref="UniProtKB/Swiss-Prot:P0AE30" /db_xref="EcoGene:EG11627" /db_xref="GeneID:949066" /translation="MFEYLPELMKGLHTSLTLTVASLIVALILALIFTIILTLKTPVL VWLVRGYITLFTGTPLLVQIFLIYYGPGQFPTLQEYPALWHLLSEPWLCALIALSLNS AAYTTQLFYGAIRAIPEGQWQSCSALGMSKKDTLAILLPYAFKRSLSSYSNEVVLVFK STSLAYTITLMEVMGYSQLLYGRTYDVMVFGAAGIIYLVVNGLLTLMMRLIERKALAF ERRN" gene complement(901534..902250) /gene="artQ" /locus_tag="b0862" /gene_synonym="ECK0853; JW0846" /db_xref="EcoGene:EG11626" /db_xref="GeneID:949046" CDS complement(901534..902250) /gene="artQ" /locus_tag="b0862" /gene_synonym="ECK0853; JW0846" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006526 - arginine biosynthetic process" /note="arginine 3rd transport system permease protein; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="arginine ABC transporter permease" /protein_id="NP_415383.1" /db_xref="GI:16128830" /db_xref="ASAP:ABE-0002933" /db_xref="UniProtKB/Swiss-Prot:P0AE34" /db_xref="EcoGene:EG11626" /db_xref="GeneID:949046" /translation="MNEFFPLASAAGMTVGLAVCALIVGLALAMFFAVWESAKWRPVA WAGSALVTILRGLPEILVVLFIYFGSSQLLLTLSDGFTINLGFVQIPVQMDIENFDVS PFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRH ALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIVAAAIYLVITLL SQYILKRIDLRATRFERRPS" gene complement(902257..902988) /gene="artI" /locus_tag="b0863" /gene_synonym="ECK0854; JW0847" /db_xref="EcoGene:EG11625" /db_xref="GeneID:948988" CDS complement(902257..902988) /gene="artI" /locus_tag="b0863" /gene_synonym="ECK0854; JW0847" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006542 - glutamine biosynthetic process" /note="arginine 3rd transport system periplasmic binding protein" /codon_start=1 /transl_table=11 /product="arginine transporter subunit" /protein_id="NP_415384.1" /db_xref="GI:16128831" /db_xref="ASAP:ABE-0002937" /db_xref="UniProtKB/Swiss-Prot:P30859" /db_xref="EcoGene:EG11625" /db_xref="GeneID:948988" /translation="MKKVLIAALIAGFSLSATAAETIRFATEASYPPFESIDANNQIV GFDVDLAQALCKEIDATCTFSNQAFDSLIPSLKFRRVEAVMAGMDITPEREKQVLFTT PYYDNSALFVGQQGKYTSVDQLKGKKVGVQNGTTHQKFIMDKHPEITTVPYDSYQNAK LDLQNGRIDGVFGDTAVVTEWLKDNPKLAAVGDKVTDKDYFGTGLGIAVRQGNTELQQ KLNTALEKVKKDGTYETIYNKWFQK" gene complement(903006..903734) /gene="artP" /locus_tag="b0864" /gene_synonym="ECK0855; JW0848" /db_xref="EcoGene:EG11624" /db_xref="GeneID:945489" CDS complement(903006..903734) /gene="artP" /locus_tag="b0864" /gene_synonym="ECK0855; JW0848" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006526 - arginine biosynthetic process" /note="ATP-binding component of 3rd arginine transport system" /codon_start=1 /transl_table=11 /product="arginine ABC transporter ATPase" /protein_id="NP_415385.1" /db_xref="GI:16128832" /db_xref="ASAP:ABE-0002939" /db_xref="UniProtKB/Swiss-Prot:P0AAF6" /db_xref="EcoGene:EG11624" /db_xref="GeneID:945489" /translation="MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSL LRVLNLLEMPRSGTLNIAGNHFDFTKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQQN LIEAPCRVLGLSKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEP QVLLFDEPTAALDPEITAQIVSIIRELAETNITQVIVTHEVEVARKTASRVVYMENGH IVEQGDASCFTEPQTEAFKNYLSH" gene complement(903952..904467) /gene="ybjP" /locus_tag="b0865" /gene_synonym="ECK0856; JW0849" /db_xref="EcoGene:EG13685" /db_xref="GeneID:945491" CDS complement(903952..904467) /gene="ybjP" /locus_tag="b0865" /gene_synonym="ECK0856; JW0849" /function="putative enzyme; Not classified" /note="putative lipoprotein" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_415386.1" /db_xref="GI:16128833" /db_xref="ASAP:ABE-0002941" /db_xref="UniProtKB/Swiss-Prot:P75818" /db_xref="EcoGene:EG13685" /db_xref="GeneID:945491" /translation="MRYSKLTMLIPCALLLSACTTVTPAYKDNGTRSGPCVEGGPDNV AQQFYDYRILHRSNDITALRPYLSDKLATLLSDASRDNNHRELLTNDPFSSRTTLPDS AHVASASTIPNRDARNIPLRVDLKQGDQGWQDEVLMIQEGQCWVIDDVRYLGGSVHAT AGTLRQSIENR" gene 904593..904916 /gene="ybjQ" /locus_tag="b0866" /gene_synonym="ECK0857; JW0850" /db_xref="EcoGene:EG13686" /db_xref="GeneID:945493" CDS 904593..904916 /gene="ybjQ" /locus_tag="b0866" /gene_synonym="ECK0857; JW0850" /codon_start=1 /transl_table=11 /product="UPF0145 family protein" /protein_id="NP_415387.1" /db_xref="GI:16128834" /db_xref="ASAP:ABE-0002945" /db_xref="UniProtKB/Swiss-Prot:P0A8C1" /db_xref="EcoGene:EG13686" /db_xref="GeneID:945493" /translation="MQFSTTPTLEGQTIVEYCGVVTGEAILGANIFRDFFAGIRDIVG GRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSMLMVSVSGTA VKTRR" gene 904913..905743 /gene="amiD" /locus_tag="b0867" /gene_synonym="ECK0858; JW0851; ybjR" /db_xref="EcoGene:EG13687" /db_xref="GeneID:945494" CDS 904913..905743 /gene="amiD" /locus_tag="b0867" /gene_synonym="ECK0858; JW0851; ybjR" /function="putative regulator; Not classified" /codon_start=1 /transl_table=11 /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; OM lipoprotein" /protein_id="NP_415388.1" /db_xref="GI:16128835" /db_xref="ASAP:ABE-0002947" /db_xref="UniProtKB/Swiss-Prot:P75820" /db_xref="EcoGene:EG13687" /db_xref="GeneID:945494" /translation="MRRFFWLVAAALLLAGCAGEKGIVEKEGYQLDTRRQAQAAYPRI KVLVIHYTADDFDSSLATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGI SAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKP ENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASL LELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEALLEKYGQD " gene complement(905740..906753) /gene="ybjS" /locus_tag="b0868" /gene_synonym="ECK0859; JW5819" /db_xref="EcoGene:EG13688" /db_xref="GeneID:945495" CDS complement(905740..906753) /gene="ybjS" /locus_tag="b0868" /gene_synonym="ECK0859; JW5819" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative NAD(P)H-dependent oxidoreductase" /protein_id="NP_415389.2" /db_xref="GI:90111178" /db_xref="ASAP:ABE-0002949" /db_xref="UniProtKB/Swiss-Prot:P75821" /db_xref="EcoGene:EG13688" /db_xref="GeneID:945495" /translation="MKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMG AEFVPADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAV AWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMLSQANPQ TRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLA SQEACDKLPSGRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMER LGRKSAKEPPLTHYGVSKLNFDFTLDITRAQEELGYQPVITLDEGIEKTAAWLRDHGK LPR" gene complement(906852..908282) /gene="ybjT" /locus_tag="b0869" /gene_synonym="ECK0860; JW5116" /db_xref="EcoGene:EG13689" /db_xref="GeneID:945496" CDS complement(906852..908282) /gene="ybjT" /locus_tag="b0869" /gene_synonym="ECK0860; JW5116" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative NAD-dependent oxidoreductase" /protein_id="NP_415390.4" /db_xref="GI:90111179" /db_xref="ASAP:ABE-0002951" /db_xref="UniProtKB/Swiss-Prot:P75822" /db_xref="EcoGene:EG13689" /db_xref="GeneID:945496" /translation="MPQRILVLGASGYIGQHLVRTLSQQGHQILAAARHVDRLAKLQL ANVSCHKVDLSWPDNLPALLQDIDTVYFLVHSMGEGGDFIAQERQVALNVRDALREVP VKQLIFLSSLQAPPHEQSDHLRARQATADILREANVPVTELRAGIIVGAGSAAFEVMR DMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPASEHRIFEAAGPEVLSYQQQ FEHFMAVSGKRRWLIPIPLPTRWISVWFLNVITSVPPTTARALIQGLKHDLLADDTAL RALIPQRLIAFDDAVRSTLKEEEKLVNSSDWGYDAQAFARWRPEYGYFAKQAGFTVKT SASLAALWQVVNQIGGKERYFFGNILWQTRALMDRAIGHKLAKGRPEREYLQTGDAVD SWKVIVVEPEKQLTLLFGMKAPGLGRLCFSLEDKGDYRTIDVRAFWHPHGMPGLFYWL LMIPAHLFIFRGMAKQIARLAEQSTD" gene complement(908293..909294) /gene="ltaE" /locus_tag="b0870" /gene_synonym="ECK0861; JW0854; ltaA; ybjU" /db_xref="EcoGene:EG13690" /db_xref="GeneID:944955" CDS complement(908293..909294) /gene="ltaE" /locus_tag="b0870" /gene_synonym="ECK0861; JW0854; ltaA; ybjU" /EC_number="4.1.2.5" /function="putative enzyme; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 9692922" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006545 - glycine biosynthetic process" /codon_start=1 /transl_table=11 /product="L-allo-threonine aldolase, PLP-dependent" /protein_id="NP_415391.1" /db_xref="GI:16128838" /db_xref="ASAP:ABE-0002954" /db_xref="UniProtKB/Swiss-Prot:P75823" /db_xref="EcoGene:EG13690" /db_xref="GeneID:944955" /translation="MIDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAA ELSGKEAAIFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLFEAGGAAVLGSIQPQP IDAAADGTLPLDKVAMKIKPDDIHFARTKLLSLENTHNGKVLPREYLKEAWEFTRERN LALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAI RWRKMTGGGMRQSGILAAAGIYALKNNVARLQEDHDNAAWMAEQLREAGADVMRQDTN MLFVRVGEENAAALGEYMKARNVLINASPIVRLVTHLDVSREQLAEVAAHWRAFLAR" gene complement(909331..911049) /gene="poxB" /locus_tag="b0871" /gene_synonym="ECK0862; JW0855" /db_xref="EcoGene:EG10754" /db_xref="GeneID:946132" CDS complement(909331..911049) /gene="poxB" /locus_tag="b0871" /gene_synonym="ECK0862; JW0855" /EC_number="1.2.5.1" /function="enzyme; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 3902830" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0042867 - pyruvate catabolic process" /note="pyruvate oxidase" /codon_start=1 /transl_table=11 /product="pyruvate dehydrogenase, thiamine triphosphate-binding, FAD-binding" /protein_id="NP_415392.1" /db_xref="GI:16128839" /db_xref="ASAP:ABE-0002958" /db_xref="UniProtKB/Swiss-Prot:P07003" /db_xref="EcoGene:EG10754" /db_xref="GeneID:946132" /translation="MKQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEW MSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHI PSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLP GDVALKPAPEGATMHWYHAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKE LVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQF PYRAFYPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVEEKADRKFLDK ALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLK MNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMK LPVKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVD EALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELA KTNWLR" repeat_region 911147..911172 /note="REP84 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(911182..912150) /gene="hcr" /locus_tag="b0872" /gene_synonym="ECK0863; JW5117; ybjV" /db_xref="EcoGene:EG13691" /db_xref="GeneID:947660" CDS complement(911182..912150) /gene="hcr" /locus_tag="b0872" /gene_synonym="ECK0863; JW5117; ybjV" /EC_number="1.-.-.-" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="HCP oxidoreductase, NADH-dependent" /protein_id="NP_415393.1" /db_xref="GI:16128840" /db_xref="ASAP:ABE-0002960" /db_xref="UniProtKB/Swiss-Prot:P75824" /db_xref="EcoGene:EG13691" /db_xref="GeneID:947660" /translation="MTMPTNQCPWRMQVHHITQETPDVWTISLICHDYYPYRAGQYAL VSVRNSAETLRAYTISSTPGVSEYITLTVRRIDDGVGSQWLTRDVKRGDYLWLSDAMG EFTCDDKAEDKFLLLAAGCGVTPIMSMRRWLAKNRPQADVRVIYNVRTPQDVIFADEW RNYPVTLVAENNVTEGFIAGRLTRELLAGVPDLASRTVMTCGPAPYMDWVEQEVKALG VTRFFKEKFFTPVAEAATSGLKFTKLQPAREFYAPVGTTLLEALESNNVPVVAACRAG VCGCCKTKVVSGEYTVSSTMTLTDAEIAEGYVLACSCHPQGDLVLA" gene complement(912162..913814) /gene="hcp" /locus_tag="b0873" /gene_synonym="ECK0864; JW0857; ybjW" /db_xref="EcoGene:EG13692" /db_xref="GeneID:946592" CDS complement(912162..913814) /gene="hcp" /locus_tag="b0873" /gene_synonym="ECK0864; JW0857; ybjW" /function="orf; Not classified" /codon_start=1 /transl_table=11 /product="hybrid-cluster [4Fe-2S-2O] subunit of anaerobic terminal reductases" /protein_id="NP_415394.4" /db_xref="GI:90111180" /db_xref="ASAP:ABE-0002962" /db_xref="UniProtKB/Swiss-Prot:P75825" /db_xref="EcoGene:EG13692" /db_xref="GeneID:946592" /translation="MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQG LSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQC LAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLK GAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSIL DAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLP AHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRS IVGWPGVRHLDGDDFSAVITQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVS REKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLP RLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVK NIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA" gene complement(913958..914857) /gene="ybjE" /locus_tag="b0874" /gene_synonym="ECK0865; JW0858" /db_xref="EcoGene:EG13426" /db_xref="GeneID:947142" CDS complement(913958..914857) /gene="ybjE" /locus_tag="b0874" /gene_synonym="ECK0865; JW0858" /function="putative structure; Not classified" /note="putative surface protein" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="NP_415395.2" /db_xref="GI:90111181" /db_xref="ASAP:ABE-0002966" /db_xref="UniProtKB/Swiss-Prot:P75826" /db_xref="EcoGene:EG13426" /db_xref="GeneID:947142" /translation="MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFM GISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRI AMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQ IVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFG PVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMV PAAIVHGFILSLLVPILIAFFSA" gene complement(915352..916047) /gene="aqpZ" /locus_tag="b0875" /gene_synonym="bniP; ECK0866; JW0859" /db_xref="EcoGene:EG13270" /db_xref="GeneID:945497" CDS complement(915352..916047) /gene="aqpZ" /locus_tag="b0875" /gene_synonym="bniP; ECK0866; JW0859" /function="transport; Transport of small molecules: Other" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006970 - response to osmotic stress" /note="transmembrane water channel; aquaporin Z" /codon_start=1 /transl_table=11 /product="aquaporin Z" /protein_id="NP_415396.1" /db_xref="GI:16128843" /db_xref="ASAP:ABE-0002976" /db_xref="UniProtKB/Swiss-Prot:P60844" /db_xref="EcoGene:EG13270" /db_xref="GeneID:945497" /translation="MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFG LTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI ASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGII GGLIYRTLLEKRD" gene 916473..918131 /gene="ybjD" /locus_tag="b0876" /gene_synonym="ECK0867; JW0860" /db_xref="EcoGene:EG13425" /db_xref="GeneID:945498" CDS 916473..918131 /gene="ybjD" /locus_tag="b0876" /gene_synonym="ECK0867; JW0860" /codon_start=1 /transl_table=11 /product="putative OLD family ATP-dependent endonuclease; DUF2813 family protein" /protein_id="NP_415397.1" /db_xref="GI:16128844" /db_xref="ASAP:ABE-0002980" /db_xref="UniProtKB/Swiss-Prot:P75828" /db_xref="EcoGene:EG13425" /db_xref="GeneID:945498" /translation="MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTL LLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTP CTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLR DARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEH YFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQA KGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVE HVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWV INELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATV RSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRMAQIPENVPMNLRKIISKAI HRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD" gene complement(918128..919120) /gene="ybjX" /locus_tag="b0877" /gene_synonym="ECK0868; JW0861" /db_xref="EcoGene:EG13693" /db_xref="GeneID:946025" CDS complement(918128..919120) /gene="ybjX" /locus_tag="b0877" /gene_synonym="ECK0868; JW0861" /function="putative enzyme; Not classified" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="DUF535 family protein" /protein_id="NP_415398.1" /db_xref="GI:16128845" /db_xref="ASAP:ABE-0002982" /db_xref="UniProtKB/Swiss-Prot:P75829" /db_xref="EcoGene:EG13693" /db_xref="GeneID:946025" /translation="MVKSTPCITIDFMNMSQLTERTFTPSESLSSLSLFLSLARGQCR PGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLA ANLSRKQLLEALRYHYALLRECMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMI SMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATK ACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWE SVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG" gene 919235..920350 /gene="macA" /locus_tag="b0878" /gene_synonym="ECK0869; JW0862; ybjY" /db_xref="EcoGene:EG13694" /db_xref="GeneID:947322" CDS 919235..920350 /gene="macA" /locus_tag="b0878" /gene_synonym="ECK0869; JW0862; ybjY" /function="putative membrane; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 17214741" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="macrolide transporter membrane fusion protein (MFP) component" /protein_id="NP_415399.4" /db_xref="GI:90111182" /db_xref="ASAP:ABE-0002986" /db_xref="UniProtKB/Swiss-Prot:P75830" /db_xref="EcoGene:EG13694" /db_xref="GeneID:947322" /translation="MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPG DLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIK EVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTKAVSQQDLDTAATEMAVKQAQI GTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLA DMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYY ARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETR EREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ" gene 920347..922293 /gene="macB" /locus_tag="b0879" /gene_synonym="ECK0870; JW0863; ybjZ" /db_xref="EcoGene:EG13695" /db_xref="GeneID:945164" CDS 920347..922293 /gene="macB" /locus_tag="b0879" /gene_synonym="ECK0870; JW0863; ybjZ" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="macrolide ABC transporter peremase/ATPase" /protein_id="NP_415400.1" /db_xref="GI:16128847" /db_xref="ASAP:ABE-0002989" /db_xref="UniProtKB/Swiss-Prot:P75831" /db_xref="EcoGene:EG13695" /db_xref="GeneID:945164" /translation="MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASG SGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLT AEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALM NGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRD GEIVRNPPAIEKVNVTGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTM LGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYD DLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQ EQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVL RVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMD GVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARAS DVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVT GILFGWLPARNAARLDPVDALARE" gene complement(922366..922590) /gene="cspD" /locus_tag="b0880" /gene_synonym="cspH; ECK0871; JW0864; ybjA" /db_xref="EcoGene:EG11111" /db_xref="GeneID:945669" CDS complement(922366..922590) /gene="cspD" /locus_tag="b0880" /gene_synonym="cspH; ECK0871; JW0864; ybjA" /function="phenotype; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 9868784" /GO_component="GO:0005737 - cytoplasm" /note="stress induced DNA replication inhibitor." /codon_start=1 /transl_table=11 /product="inhibitor of DNA replication, cold shock protein homolog" /protein_id="NP_415401.1" /db_xref="GI:16128848" /db_xref="ASAP:ABE-0002991" /db_xref="UniProtKB/Swiss-Prot:P0A968" /db_xref="EcoGene:EG11111" /db_xref="GeneID:945669" /translation="MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKA GQSVQFDVHQGPKGNHASVIVPVEVEAAVA" gene 922913..923233 /gene="clpS" /locus_tag="b0881" /gene_synonym="ECK0872; JW0865; yljA" /db_xref="EcoGene:EG14241" /db_xref="GeneID:948443" CDS 922913..923233 /gene="clpS" /locus_tag="b0881" /gene_synonym="ECK0872; JW0865; yljA" /codon_start=1 /transl_table=11 /product="regulatory protein for ClpA substrate specificity" /protein_id="NP_415402.1" /db_xref="GI:16128849" /db_xref="ASAP:ABE-0002998" /db_xref="UniProtKB/Swiss-Prot:P0A8Q6" /db_xref="EcoGene:EG14241" /db_xref="GeneID:948443" /translation="MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVI DVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCT LEKA" gene 923264..925540 /gene="clpA" /locus_tag="b0882" /gene_synonym="ECK0873; JW0866; lopD" /db_xref="EcoGene:EG10156" /db_xref="GeneID:945764" CDS 923264..925540 /gene="clpA" /locus_tag="b0882" /gene_synonym="ECK0873; JW0866; lopD" /function="enzyme; Degradation of proteins, peptides, glyco" /experiment="N-terminus verified by Edman degradation: PMID 3049606" /GO_component="GO:0005737 - cytoplasm" /note="ATP-binding component of serine protease" /codon_start=1 /transl_table=11 /product="ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity" /protein_id="NP_415403.1" /db_xref="GI:16128850" /db_xref="ASAP:ABE-0003001" /db_xref="UniProtKB/Swiss-Prot:P0ABH9" /db_xref="EcoGene:EG10156" /db_xref="GeneID:945764" /translation="MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREAL EACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNE VTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSE EQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGV GKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKD RALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR HLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLK NLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL SKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEI EKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDN STDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEV SQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKN ELTYGFQSAQKHKAEAAH" gene complement(925884..925971) /gene="serW" /locus_tag="b0883" /gene_synonym="ECK0874; JWR0025" /db_xref="EcoGene:EG30096" /db_xref="GeneID:945501" tRNA complement(925884..925971) /gene="serW" /locus_tag="b0883" /gene_synonym="ECK0874; JWR0025" /product="tRNA-Ser" /note="anticodon: GGA" /db_xref="ASAP:ABE-0003003" /db_xref="EcoGene:EG30096" /db_xref="GeneID:945501" gene complement(926225..926443) /gene="infA" /locus_tag="b0884" /gene_synonym="bypA1; ECK0875; JW0867" /db_xref="EcoGene:EG10504" /db_xref="GeneID:945500" CDS complement(926225..926443) /gene="infA" /locus_tag="b0884" /gene_synonym="bypA1; ECK0875; JW0867" /function="factor; Proteins - translation and modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006412 - translation" /note="protein chain initiation factor IF-1" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-1" /protein_id="NP_415404.1" /db_xref="GI:16128851" /db_xref="ASAP:ABE-0003005" /db_xref="UniProtKB/Swiss-Prot:P69222" /db_xref="EcoGene:EG10504" /db_xref="GeneID:945500" /translation="MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNY IRILTGDKVTVELTPYDLSKGRIVFRSR" gene complement(926728..927432) /gene="aat" /locus_tag="b0885" /gene_synonym="ECK0876; JW0868; ycaA" /db_xref="EcoGene:EG11112" /db_xref="GeneID:945490" CDS complement(926728..927432) /gene="aat" /locus_tag="b0885" /gene_synonym="ECK0876; JW0868; ycaA" /EC_number="2.3.2.6" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006508 - proteolysis" /note="leucyl, phenylalanyl-tRNA-protein transferase" /codon_start=1 /transl_table=11 /product="leucyl/phenylalanyl-tRNA-protein transferase" /protein_id="NP_415405.1" /db_xref="GI:16128852" /db_xref="ASAP:ABE-0003009" /db_xref="UniProtKB/Swiss-Prot:P0A8P1" /db_xref="EcoGene:EG11112" /db_xref="GeneID:945490" /translation="MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQR GIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGC ASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFS RMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGR LPNNFWVPRCLFSPQE" gene complement(927474..929195) /gene="cydC" /locus_tag="b0886" /gene_synonym="ECK0877; JW0869; mdrA; mdrH; surB; ycaB" /db_xref="EcoGene:EG10012" /db_xref="GeneID:945504" CDS complement(927474..929195) /gene="cydC" /locus_tag="b0886" /gene_synonym="ECK0877; JW0869; mdrA; mdrH; surB; ycaB" /function="transport; Transport of small molecules: Other" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="ATP-binding component of cytochrome-related transport" /codon_start=1 /transl_table=11 /product="glutathione/cysteine ABC transporter export permease/ATPase" /protein_id="NP_415406.1" /db_xref="GI:16128853" /db_xref="ASAP:ABE-0003012" /db_xref="UniProtKB/Swiss-Prot:P23886" /db_xref="EcoGene:EG10012" /db_xref="GeneID:945504" /translation="MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLS ASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSK LLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDF TLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGA SDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQP GALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRISDLTDQKPEVTFPDTQTRVA DRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQQLTRAWDP QQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALSEIL RRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDAT TESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRY YQFKQGL" gene complement(929196..930962) /gene="cydD" /locus_tag="b0887" /gene_synonym="ECK0878; htrD; JW0870" /db_xref="EcoGene:EG11405" /db_xref="GeneID:949052" CDS complement(929196..930962) /gene="cydD" /locus_tag="b0887" /gene_synonym="ECK0878; htrD; JW0870" /function="transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="ATP-binding component of cytochrome-related transport, Zn sensitive" /codon_start=1 /transl_table=11 /product="glutathione/cysteine ABC transporter export permease/ATPase" /protein_id="NP_415407.1" /db_xref="GI:16128854" /db_xref="ASAP:ABE-0003015" /db_xref="UniProtKB/Swiss-Prot:P29018" /db_xref="EcoGene:EG11405" /db_xref="GeneID:949052" /translation="MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWF MARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQV LDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFP SNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIF GRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGEL DFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAH PQRGEAELASTDPVTIEAEELFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSL LNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDA SEQELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLL LDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGR YAELSVAGGPFATLLAHRQEEI" gene complement(931085..932050) /gene="trxB" /locus_tag="b0888" /gene_synonym="ECK0879; JW0871" /db_xref="EcoGene:EG11032" /db_xref="GeneID:949054" CDS complement(931085..932050) /gene="trxB" /locus_tag="b0888" /gene_synonym="ECK0879; JW0871" /EC_number="1.8.1.9" /function="enzyme; 2'-Deoxyribonucleotide metabolism" /GO_component="GO:0005737 - cytoplasm" /note="thioredoxin reductase" /codon_start=1 /transl_table=11 /product="thioredoxin reductase, FAD/NAD(P)-binding" /protein_id="NP_415408.1" /db_xref="GI:16128855" /db_xref="ASAP:ABE-0003018" /db_xref="UniProtKB/Swiss-Prot:P0A9P4" /db_xref="EcoGene:EG11032" /db_xref="GeneID:949054" /translation="MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL TTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNG EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE EALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGV TGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQ TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK" gene 932595..933089 /gene="lrp" /locus_tag="b0889" /gene_synonym="alsB; ECK0880; ihb; JW0872; livR; lrs; lss; lstR; mbf; oppI; rblA" /db_xref="EcoGene:EG10547" /db_xref="GeneID:949051" CDS 932595..933089 /gene="lrp" /locus_tag="b0889" /gene_synonym="alsB; ECK0880; ihb; JW0872; livR; lrs; lss; lstR; mbf; oppI; rblA" /function="regulator; Central intermediary metabolism: Pool, multipurpose conversions" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0009098 - leucine biosynthetic process; GO:0006350 - transcription" /note="regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system" /codon_start=1 /transl_table=11 /product="leucine-responsive global transcriptional regulator" /protein_id="NP_415409.1" /db_xref="GI:16128856" /db_xref="ASAP:ABE-0003023" /db_xref="UniProtKB/Swiss-Prot:P0ACJ0" /db_xref="EcoGene:EG10547" /db_xref="GeneID:949051" /translation="MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTP CLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEE IQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLV IKTR" gene 933224..937213 /gene="ftsK" /locus_tag="b0890" /gene_synonym="dinH; ECK0881; JW0873" /db_xref="EcoGene:EG13226" /db_xref="GeneID:945102" CDS 933224..937213 /gene="ftsK" /locus_tag="b0890" /gene_synonym="dinH; ECK0881; JW0873" /function="phenotype; Cell division" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009432 - SOS response" /note="cell division protein" /codon_start=1 /transl_table=11 /product="DNA translocase at septal ring sorting daughter chromsomes" /protein_id="NP_415410.1" /db_xref="GI:16128857" /db_xref="ASAP:ABE-0003027" /db_xref="UniProtKB/Swiss-Prot:P46889" /db_xref="EcoGene:EG13226" /db_xref="GeneID:945102" /translation="MSQEYIEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSF NPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQS SDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHS SGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYE DDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDE EITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWA APVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQ YNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQ TEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRARERE QLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAA TVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKA REAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAA EAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQ QPQQPVAPQQQYQQPQQPVPPQPQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPV APQQQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPV DTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLA RSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDI AGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELS VYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRM MRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKAR AAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDM LYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGA EELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNR EVLAPPPFD" repeat_region 937224..937259 /note="REP85 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 937372..937983 /gene="lolA" /locus_tag="b0891" /gene_synonym="ECK0882; JW0874; lplA; yzzV" /db_xref="EcoGene:EG12684" /db_xref="GeneID:948989" CDS 937372..937983 /gene="lolA" /locus_tag="b0891" /gene_synonym="ECK0882; JW0874; lplA; yzzV" /function="transport; Protein, peptide secretion" /GO_component="GO:0042597 - periplasmic space" /note="periplasmic protein effects translocation of lipoproteins from inner membrane to outer" /codon_start=1 /transl_table=11 /product="lipoprotein chaperone" /protein_id="NP_415411.2" /db_xref="GI:145698236" /db_xref="ASAP:ABE-0003031" /db_xref="UniProtKB/Swiss-Prot:P61316" /db_xref="EcoGene:EG12684" /db_xref="GeneID:948989" /translation="MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQK VTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWL KDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQ FSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK" gene 937994..939337 /gene="rarA" /locus_tag="b0892" /gene_synonym="ECK0883; JW0875; mgsA; ycaJ" /db_xref="EcoGene:EG12690" /db_xref="GeneID:945505" CDS 937994..939337 /gene="rarA" /locus_tag="b0892" /gene_synonym="ECK0883; JW0875; mgsA; ycaJ" /function="putative enzyme; Not classified" /note="putative polynucleotide enzyme" /codon_start=1 /transl_table=11 /product="recombination intermediate processing DNA-dependent ATPase" /protein_id="NP_415412.1" /db_xref="GI:16128859" /db_xref="ASAP:ABE-0003034" /db_xref="UniProtKB/Swiss-Prot:P0AAZ4" /db_xref="EcoGene:EG12690" /db_xref="GeneID:945505" /translation="MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRA IEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNR NAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY LLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMM ADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALY WYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIA QAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYA HDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR" gene 939428..940720 /gene="serS" /locus_tag="b0893" /gene_synonym="ECK0884; JW0876" /db_xref="EcoGene:EG10947" /db_xref="GeneID:945506" CDS 939428..940720 /gene="serS" /locus_tag="b0893" /gene_synonym="ECK0884; JW0876" /EC_number="6.1.1.11" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="serine tRNA synthetase; also charges selenocystein tRNA with serine" /codon_start=1 /transl_table=11 /product="seryl-tRNA synthetase" /protein_id="NP_415413.1" /db_xref="GI:16128860" /db_xref="ASAP:ABE-0003038" /db_xref="UniProtKB/Swiss-Prot:P0A8L1" /db_xref="EcoGene:EG10947" /db_xref="GeneID:945506" /translation="MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKT ENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALT IPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGS RFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLF HTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGR DTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMG FGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSG LAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG" gene 940959..943403 /gene="dmsA" /locus_tag="b0894" /gene_synonym="ECK0885; JW5118" /db_xref="EcoGene:EG10232" /db_xref="GeneID:945508" CDS 940959..943403 /gene="dmsA" /locus_tag="b0894" /gene_synonym="ECK0885; JW5118" /EC_number="1.8.99.-" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration" /note="anaerobic dimethyl sulfoxide reductase subunit A" /codon_start=1 /transl_table=11 /product="dimethyl sulfoxide reductase, anaerobic, subunit A" /protein_id="NP_415414.4" /db_xref="GI:90111183" /db_xref="ASAP:ABE-0003044" /db_xref="UniProtKB/Swiss-Prot:P18775" /db_xref="EcoGene:EG10232" /db_xref="GeneID:945508" /translation="MKTKIPDAVLAAEVSRRGLVKTTAIGGLAMASSALTLPFSRIAH AVDSAIPTKSDEKVIWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGDDNYDGLHQVR ACLRGRSMRRRVYNPDRLKYPMKRVGARGEGKFERISWEEAYDIIATNMQRLIKEYGN ESIYLNYGTGTLGGTMTRSWPPGNTLVARLMNCCGGYLNHYGDYSSAQIAEGLNYTYG GWADGNSPSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTD TGAGREDEWIPIRPGTDAALVNGLAYVMITENLVDQAFLDKYCVGYDEKTLPASAPKN GHYKAYILGEGPDGVAKTPEWASQITGVPADKIIKLAREIGSTKPAFISQGWGPQRHA NGEIATRAISMLAILTGNVGINGGNSGAREGSYSLPFVRMPTLENPIQTSISMFMWTD AIERGPEMTALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCEL IVVIDCHMTSSAKYADILLPDCTASEQMDFALDASCGNMSYVIFNDQVIKPRFECKTI YEMTSELAKRLGVEQQFTEGRTQEEWMRHLYAQSREAIPELPTFEEFRKQGIFKKRDP QGHHVAYKAFREDPQANPLTTPSGKIEIYSQALADIAATWELPEGDVIDPLPIYTPGF ESYQDPLNKQYPLQLTGFHYKSRVHSTYGNVDVLKAACRQEMWINPLDAQKRGIHNGD KVRIFNDRGEVHIEAKVTPRMMPGVVALGEGAWYDPDAKRVDKGGCINVLTTQRPSPL AKGNPSHTNLVQVEKV" gene 943414..944031 /gene="dmsB" /locus_tag="b0895" /gene_synonym="ECK0886; JW0878" /db_xref="EcoGene:EG10233" /db_xref="GeneID:945507" CDS 943414..944031 /gene="dmsB" /locus_tag="b0895" /gene_synonym="ECK0886; JW0878" /EC_number="1.8.99.-" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration" /note="anaerobic dimethyl sulfoxide reductase subunit B" /codon_start=1 /transl_table=11 /product="dimethyl sulfoxide reductase, anaerobic, subunit B" /protein_id="NP_415415.1" /db_xref="GI:16128862" /db_xref="ASAP:ABE-0003046" /db_xref="UniProtKB/Swiss-Prot:P18776" /db_xref="EcoGene:EG10233" /db_xref="GeneID:945507" /translation="MTTQYGFFIDSSRCTGCKTCELACKDYKDLTPEVSFRRIYEYAG GDWQEDNGVWHQNVFAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGC RYCHMACPYGAPQYNETKGHMTKCDGCYDRVAEGKKPICVESCPLRALDFGPIDELRK KHGDLAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPKEV" gene 944033..944896 /gene="dmsC" /locus_tag="b0896" /gene_synonym="ECK0887; JW0879" /db_xref="EcoGene:EG10234" /db_xref="GeneID:945502" CDS 944033..944896 /gene="dmsC" /locus_tag="b0896" /gene_synonym="ECK0887; JW0879" /EC_number="1.8.99.-" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration" /note="anaerobic dimethyl sulfoxide reductase subunit C" /codon_start=1 /transl_table=11 /product="dimethyl sulfoxide reductase, anaerobic, subunit C" /protein_id="NP_415416.1" /db_xref="GI:16128863" /db_xref="ASAP:ABE-0003048" /db_xref="UniProtKB/Swiss-Prot:P18777" /db_xref="EcoGene:EG10234" /db_xref="GeneID:945502" /translation="MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEAQQRV IACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSNEIASGSIFFAVGGIGW LLAMLKKLSPALRTLWLIVTMVLGVIFVWMMVRVYNSIDTVPTWYSIWTPMGFFLTMF MGGPLLGYLLLSLAGVDGWAMRLLPAISVLALVVSGVVSVMQGAELATIHSSVQQAAA LVPDYGALMSWRIVLLAVALCLWIAPQLKGYQPAVPLLSVSFILLLAGELIGRGVFYG LHMTVGMAVAS" gene complement(944931..945557) /gene="ycaC" /locus_tag="b0897" /gene_synonym="ECK0888; JW0880" /db_xref="EcoGene:EG11241" /db_xref="GeneID:945512" CDS complement(944931..945557) /gene="ycaC" /locus_tag="b0897" /gene_synonym="ECK0888; JW0880" /experiment="N-terminus verified by Edman degradation: PMID 9782055" /GO_process="GO:0009063 - cellular amino acid catabolic process" /codon_start=1 /transl_table=11 /product="putative isochorismatase family hydrolase" /protein_id="NP_415417.1" /db_xref="GI:16128864" /db_xref="ASAP:ABE-0003050" /db_xref="UniProtKB/Swiss-Prot:P21367" /db_xref="EcoGene:EG11241" /db_xref="GeneID:945512" /translation="MTKPYVRLDKNDAAVLLVDHQAGLLSLVRDIEPDKFKNNVLALG DLAKYFNLPTILTTSFETGPNGPLVPELKAQFPDTPYIARPGNINAWDNEDFVKAVKA TGKKQLIIAGVVTEVCVAFPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRLSQAGA QLMTWFGVACELHRDWRNDIEGLATLFSNHIPDYRNLMTSYDTLTKQK" gene 945871..947019 /gene="ycaD" /locus_tag="b0898" /gene_synonym="ECK0889; JW0881" /db_xref="EcoGene:EG11242" /db_xref="GeneID:945515" CDS 945871..947019 /gene="ycaD" /locus_tag="b0898" /gene_synonym="ECK0889; JW0881" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative MFS transporter, inner membrane protein" /protein_id="NP_415418.1" /db_xref="GI:16128865" /db_xref="ASAP:ABE-0003056" /db_xref="UniProtKB/Swiss-Prot:P21503" /db_xref="EcoGene:EG11242" /db_xref="GeneID:945515" /translation="MSTYTQPVMLLLSGLLLLTLAIAVLNTLVPLWLAQEHMSTWQVG VVSSSYFTGNLVGTLLTGYVIKRIGFNRSYYLASFIFAAGCAGLGLMIGFWSWLAWRF VAGVGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYVGTFLGQLLVSKVSTELMSV LPWVTGLTLAGILPLLFTRVLNQQAENHDSTSITSMLKLRQARLGVNGCIISGIVLGS LYGLMPLYLNHKGVSNASIGFWMAVLVSAGILGQWPIGRLADKFGRLLVLRVQVFVVI LGSIAMLSQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGS LLGPSFTAMLMQNFSDNLLFIMIASVSFIYLLMLLRNAGHTPKPVAHV" gene 947229..948659 /gene="ycaM" /locus_tag="b0899" /gene_synonym="ECK0890; JW5119" /db_xref="EcoGene:EG13697" /db_xref="GeneID:945518" CDS 947229..948659 /gene="ycaM" /locus_tag="b0899" /gene_synonym="ECK0890; JW5119" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="NP_415419.2" /db_xref="GI:90111184" /db_xref="ASAP:ABE-0003058" /db_xref="UniProtKB/Swiss-Prot:P75835" /db_xref="EcoGene:EG13697" /db_xref="GeneID:945518" /translation="MAGNVQEKQLRWYNIALMSFITVWGFGNVVNNYANQGLVVVFSW VFIFALYFTPYALIVGQLGSTFKDGKGGVSTWIKHTMGPGLAYLAAWTYWVVHIPYLA QKPQAILIALGWAMKGDGSLIKEYSVVALQGLTLVLFIFFMWVASRGMKSLKIVGSVA GIAMFVMSLLYVAMAVTAPAITEVHIATTNITWETFIPHIDFTYITTISMLVFAVGGA EKISPYVNQTRNPGKEFPKGMLCLAVMVAVCAILGSLAMGMMFDSRNIPDDLMTNGQY YAFQKLGEYYNMGNTLMVIYAIANTLGQVAALVFSIDAPLKVLLGDADSKYIPASLCR TNASGTPVNGYFLTLVLVAILIMLPTLGIGDMNNLYKWLLNLNSVVMPLRYLWVFVAF IAVVRLAQKYKPEYVFIRNKPLAMTVGIWCFAFTAFACLTGIFPKMEAFTAEWTFQLA LNVATPFVLVGLGLIFPLLARKANSK" gene complement(948660..949568) /gene="ycaN" /locus_tag="b0900" /gene_synonym="ECK0891; JW0883" /db_xref="EcoGene:EG13698" /db_xref="GeneID:945523" CDS complement(948660..949568) /gene="ycaN" /locus_tag="b0900" /gene_synonym="ECK0891; JW0883" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="LysR family putative transcriptional regulator" /protein_id="NP_415420.1" /db_xref="GI:16128867" /db_xref="ASAP:ABE-0003060" /db_xref="UniProtKB/Swiss-Prot:P75836" /db_xref="EcoGene:EG13698" /db_xref="GeneID:945523" /translation="MRMNMSDFATFFAVARNQSFRAAGDELGLSSSAISHSIKTLEQR LKIRLFNRTTRSVSLTEAGSNLYERLRPAFDEIQIMLDEMNDFRLTPTGTLKINAARV AARIFLMSLLVGFTREYPDIKVELTTDDSLVDIVQQGFDAGVRLSCIVEKDMISVAIG PPVKLCVAATPEYFARYGKPRHPHDLLNHQCVVFRYPSGKPFHWQFAKELEIAVAGNI ILDDVDAELEAVLMGAGIGYLLYEQIKEYLDTGRLECVLEDWSTERPGFQIYYPNRQY MSCGLRAFLDYVKTGQICQSQRHRPQ" gene 949668..950258 /gene="ycaK" /locus_tag="b0901" /gene_synonym="ECK0892; JW0884" /db_xref="EcoGene:EG12702" /db_xref="GeneID:945520" CDS 949668..950258 /gene="ycaK" /locus_tag="b0901" /gene_synonym="ECK0892; JW0884" /GO_function="GO:0009055 - electron carrier activity" /codon_start=1 /transl_table=11 /product="putative NAD(P)H-dependent oxidoreductase" /protein_id="NP_415421.1" /db_xref="GI:16128868" /db_xref="ASAP:ABE-0003065" /db_xref="UniProtKB/Swiss-Prot:P43340" /db_xref="EcoGene:EG12702" /db_xref="GeneID:945520" /translation="MQSERIYLVWAHPRHDSLTAHIADAIHQRAMERKIQVTELDLYR RNFNPVMTPEDEPDWKNMDKRYSPEVHQLYSELLEHDTLVVVFPLWWYSFPAMLKGYI DRVWNNGLAYGDGHKLPFNKVRWVALVGGDKESFVQMGWEKNISDYLKNMCSYLGIED ADVTFLCNTVVFDGEELHASYYQSLLSQVRDMVDAL" gene complement(950340..951080) /gene="pflA" /locus_tag="b0902" /gene_synonym="act; ECK0893; JW0885" /db_xref="EcoGene:EG10028" /db_xref="GeneID:945517" CDS complement(950340..951080) /gene="pflA" /locus_tag="b0902" /gene_synonym="act; ECK0893; JW0885" /EC_number="1.97.1.4" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009061 - anaerobic respiration; GO:0006464 - protein modification process" /codon_start=1 /transl_table=11 /product="pyruvate formate-lyase 1-activating enzyme; [formate-C-acetyltransferase 1]-activating enzyme; PFL activase" /protein_id="NP_415422.1" /db_xref="GI:16128869" /db_xref="ASAP:ABE-0003068" /db_xref="UniProtKB/Swiss-Prot:P0A9N4" /db_xref="EcoGene:EG10028" /db_xref="GeneID:945517" /translation="MSVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWD THGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHT CLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANK NVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYK LDGVKPPKKETMERVKGILEQYGHKVMF" gene complement(951272..953554) /gene="pflB" /locus_tag="b0903" /gene_synonym="ECK0894; JW0886; pfl" /db_xref="EcoGene:EG10701" /db_xref="GeneID:945514" CDS complement(951272..953554) /gene="pflB" /locus_tag="b0903" /gene_synonym="ECK0894; JW0886; pfl" /EC_number="2.3.1.54" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009061 - anaerobic respiration; GO:0009063 - cellular amino acid catabolic process" /note="formate acetyltransferase 1" /codon_start=1 /transl_table=11 /product="formate C-acetyltransferase 1, anaerobic; pyruvate formate-lyase 1" /protein_id="NP_415423.1" /db_xref="GI:16128870" /db_xref="ASAP:ABE-0003071" /db_xref="UniProtKB/Swiss-Prot:P09373" /db_xref="EcoGene:EG10701" /db_xref="GeneID:945514" /translation="MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFL AGATEATTTLWDKVMEGVKLENRTHAPVDFDTAVASTITSHDAGYINKQLEKIVGLQT EAPLKRALIPFGGIKMIEGSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRC RKSGVLTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKLAQFTSLQADLENGVNLEQTI RLREEIAEQHRALGQMKEMAAKYGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMS FGRTSTFLDVYIERDLKAGKITEQEAQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIW ATESIGGMGLDGRTLVTKNSFRFLNTLYTMGPSPEPNMTILWSEKLPLNFKKFAAKVS IDTSSLQYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGG VDEKLKMQVGPKSEPIKGDVLNYDEVMERMDHFMDWLAKQYITALNIIHYMHDKYSYE ASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAIDFEIEGEYPQ FGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPTQSVLTITSNVVYGKKTGNTPDGR RAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVR KTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRF NSLTKEQQQDVITRTFTQSM" gene complement(953609..954466) /gene="focA" /locus_tag="b0904" /gene_synonym="ECK0895; JW0887; ycaE" /db_xref="EcoGene:EG11258" /db_xref="GeneID:945513" CDS complement(953609..954466) /gene="focA" /locus_tag="b0904" /gene_synonym="ECK0895; JW0887; ycaE" /function="putative transport; Degradation of small molecules: Carbon compounds" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="probable formate transporter (formate channel 1)" /codon_start=1 /transl_table=11 /product="formate channel" /protein_id="NP_415424.1" /db_xref="GI:16128871" /db_xref="ASAP:ABE-0003073" /db_xref="UniProtKB/Swiss-Prot:P0AC23" /db_xref="EcoGene:EG11258" /db_xref="GeneID:945513" /translation="MKADNPFDLLLPAAMAKVAEEAGVYKATKHPLKTFYLAITAGVF ISIAFVFYITATTGTGTMPFGMAKLVGGICFSLGLILCVVCGADLFTSTVLIVVAKAS GRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKVHHT FIEAVCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMIP MGIVIRDFASPEFWTAVGSAPENFSHLTVMNFITDNLIPVTIGNIIGGGLLVGLTYWV IYLRENDHH" gene complement(954872..956632) /gene="ycaO" /locus_tag="b0905" /gene_synonym="ECK0896; JW0888" /db_xref="EcoGene:EG13699" /db_xref="GeneID:945509" CDS complement(954872..956632) /gene="ycaO" /locus_tag="b0905" /gene_synonym="ECK0896; JW0888" /codon_start=1 /transl_table=11 /product="ribosomal protein S12 methylthiotransferase accessory factor" /protein_id="NP_415425.4" /db_xref="GI:90111185" /db_xref="ASAP:ABE-0003081" /db_xref="UniProtKB/Swiss-Prot:P75838" /db_xref="EcoGene:EG13699" /db_xref="GeneID:945509" /translation="MTQTFIPGKDAALEDSIARFQQKLSDLGFQIEEASWLNPVPNVW SVHIRDKECALCFTNGKGATKKAALASALGEYFERLSTNYFFADFWLGETIANGPFVH YPNEKWFPLTENDDVPEGLLDDRLRAFYDPENELTGSMLIDLQSGNEDRGICGLPFTR QSDNQTVYIPMNIIGNLYVSNGMSAGNTRNEARVQGLSEVFERYVKNRIIAESISLPE IPADVLARYPAVVEAIETLEAEGFPIFAYDGSLGGQYPVICVVLFNPANGTCFASFGA HPDFGVALERTVTELLQGRGLKDLDVFTPPTFDDEEVAEHTNLETHFIDSSGLISWDL FKQDADYPFVDWNFSGTTEEEFATLMAIFNKEDKEVYIADYEHLGVYACRIIVPGMSD IYPAEDLWLANNSMGSHLRETILSLPGSEWEKEDYLNLIEQLDEEGFDDFTRVRELLG LATGSDNGWYTLRIGELKAMLALAGGDLEQALVWTEWTMEFNSSVFSPERANYYRCLQ TLLLLAQEEDRQPLQYLNAFVRMYGADAVEAASAAMSGEAAFYGLQPVDSDLHAFAAH QSLLKAYEKLQRAKAAFWAK" gene 956762..957454 /gene="ycaP" /locus_tag="b0906" /gene_synonym="ECK0897; JW0889" /db_xref="EcoGene:EG13700" /db_xref="GeneID:945525" CDS 956762..957454 /gene="ycaP" /locus_tag="b0906" /gene_synonym="ECK0897; JW0889" /codon_start=1 /transl_table=11 /product="UPF0702 family putative inner membrane protein" /protein_id="NP_415426.1" /db_xref="GI:16128873" /db_xref="ASAP:ABE-0003089" /db_xref="UniProtKB/Swiss-Prot:P75839" /db_xref="EcoGene:EG13700" /db_xref="GeneID:945525" /translation="MKAFDLHRMAFDKVPFDFLGEVALRSLYTFVLVFLFLKMTGRRG VRQMSLFEVLIILTLGSAAGDVAFYDDVPMVPVLIVFITLALLYRLVMWLMAHSEKLE DLLEGKPVVIIEDGELAWSKLNNSNMTEFEFFMELRLRGVEQLGQVRLAILETNGQIS VYFFEDDKVKPGLLILPSDCTQRYKVVPESADYACIRCSEIIHMKAGEKQLCPRCANP EWTKASRAKRVT" gene 957653..958741 /gene="serC" /locus_tag="b0907" /gene_synonym="ECK0898; JW0890; pdxC; pdxF" /db_xref="EcoGene:EG10946" /db_xref="GeneID:945527" CDS 957653..958741 /gene="serC" /locus_tag="b0907" /gene_synonym="ECK0898; JW0890; pdxC; pdxF" /EC_number="2.6.1.52" /function="enzyme; Amino acid biosynthesis: Serine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006564 - L-serine biosynthetic process" /note="3-phosphoserine aminotransferase" /codon_start=1 /transl_table=11 /product="3-phosphoserine/phosphohydroxythreonine aminotransferase" /protein_id="NP_415427.1" /db_xref="GI:16128874" /db_xref="ASAP:ABE-0003093" /db_xref="UniProtKB/Swiss-Prot:P23721" /db_xref="EcoGene:EG10946" /db_xref="GeneID:945527" /translation="MAQIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGK EFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYW AASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAID ETPDFGADVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKA NIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELL YGVIDNSDFYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGM RASIYNAMPLEGVKALTDFMVEFERRHG" gene 958812..960095 /gene="aroA" /locus_tag="b0908" /gene_synonym="ECK0899; JW0891" /db_xref="EcoGene:EG10073" /db_xref="GeneID:945528" CDS 958812..960095 /gene="aroA" /locus_tag="b0908" /gene_synonym="ECK0899; JW0891" /EC_number="2.5.1.19" /function="enzyme; Amino acid biosynthesis: Chorismate" /experiment="N-terminus verified by Edman degradation: PMID 3518706" /GO_process="GO:0009423 - chorismate biosynthetic process" /codon_start=1 /transl_table=11 /product="5-enolpyruvylshikimate-3-phosphate synthetase" /protein_id="NP_415428.1" /db_xref="GI:16128875" /db_xref="ASAP:ABE-0003095" /db_xref="UniProtKB/Swiss-Prot:P0A6D3" /db_xref="EcoGene:EG10073" /db_xref="GeneID:945528" /translation="MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNL LDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPL AAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGG NVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQ HYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRF ADVLEKMGATICWGDDYISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNI YNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFS LVALSDTPVTILDPKCTAKTFPDYFEQLARISQAA" gene 960264..961028 /gene="ycaL" /locus_tag="b0909" /gene_synonym="ECK0900; JW0892" /db_xref="EcoGene:EG13133" /db_xref="GeneID:945534" CDS 960264..961028 /gene="ycaL" /locus_tag="b0909" /gene_synonym="ECK0900; JW0892" /function="putative factor; Not classified" /GO_process="GO:0009266 - response to temperature stimulus" /note="putative heat shock protein" /codon_start=1 /transl_table=11 /product="putative peptidase-related chaperone" /protein_id="NP_415429.2" /db_xref="GI:90111186" /db_xref="ASAP:ABE-0003098" /db_xref="UniProtKB/Swiss-Prot:P43674" /db_xref="EcoGene:EG13133" /db_xref="GeneID:945534" /translation="MKNTKLLLAIATSAALLTGCQNTHGIDTNMAISSGLNAYKAATL SDADAKAIANQGCAEMDSGNQVASKSSKYGKRLAKIAKALGNNINGTPVNYKVYMTSD VNAWAMANGCVRVYSGLMDMMNDNEIEGVLGHELGHVALGHSLAEMKASYAIVAARDA ISATSGVASQLSRSQLGDIAEGAINAKYSRDKESEADDFSFDLLKKRGISTQGLVGSF ETLASLDGGRTQSMFDSHPPSTERAQHIRDRIASGK" gene 961201..961884 /gene="cmk" /locus_tag="b0910" /gene_synonym="ECK0901; JW0893; mssA; ycaF; ycaG" /db_xref="EcoGene:EG11265" /db_xref="GeneID:945535" CDS 961201..961884 /gene="cmk" /locus_tag="b0910" /gene_synonym="ECK0901; JW0893; mssA; ycaF; ycaG" /EC_number="2.7.4.14" /function="enzyme; Pyrimidine ribonucleotide biosynthesis" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="cytidylate kinase" /protein_id="NP_415430.1" /db_xref="GI:16128877" /db_xref="ASAP:ABE-0003101" /db_xref="UniProtKB/Swiss-Prot:P0A6I0" /db_xref="EcoGene:EG11265" /db_xref="GeneID:945535" /translation="MTAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA LAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQ VAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRML QLQEKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQ YARQKLALA" gene 961995..963668 /gene="rpsA" /locus_tag="b0911" /gene_synonym="ECK0902; JW0894; ssyF" /db_xref="EcoGene:EG10900" /db_xref="GeneID:945536" CDS 961995..963668 /gene="rpsA" /locus_tag="b0911" /gene_synonym="ECK0902; JW0894; ssyF" /function="structural component; Ribosomal proteins - synthesis, modification" /experiment="N-terminus verified by Edman degradation: PMID 7041110,7783627,9298646,9600841,11248028" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S1" /protein_id="NP_415431.1" /db_xref="GI:16128878" /db_xref="ASAP:ABE-0003104" /db_xref="UniProtKB/Swiss-Prot:P0AG67" /db_xref="EcoGene:EG10900" /db_xref="GeneID:945536" /translation="MTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKS ESAIPAEQFKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAY EDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLD QKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLL HITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPE GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLD IDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKK GAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGV DRKNRAISLSVRAKDEADEKDAIATVNKQEDANFSNNAMAEAFKAAKGE" gene 963828..964112 /gene="ihfB" /locus_tag="b0912" /gene_synonym="ECK0903; himD; hip; JW0895" /db_xref="EcoGene:EG10441" /db_xref="GeneID:945533" CDS 963828..964112 /gene="ihfB" /locus_tag="b0912" /gene_synonym="ECK0903; himD; hip; JW0895" /function="factor; DNA - replication, repair, restriction/modification" /experiment="N-terminus verified by Edman degradation: PMID 9868784" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006310 - DNA recombination" /note="integration host factor (IHF), beta subunit; site-specific recombination" /codon_start=1 /transl_table=11 /product="integration host factor (IHF), DNA-binding protein, beta subunit" /protein_id="NP_415432.1" /db_xref="GI:16128879" /db_xref="ASAP:ABE-0003107" /db_xref="UniProtKB/Swiss-Prot:P0A6Y1" /db_xref="EcoGene:EG10441" /db_xref="GeneID:945533" /translation="MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIE IRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG" gene 964320..966584 /gene="ycaI" /locus_tag="b0913" /gene_synonym="ECK0904; JW5120" /db_xref="EcoGene:EG12375" /db_xref="GeneID:945531" CDS 964320..966584 /gene="ycaI" /locus_tag="b0913" /gene_synonym="ECK0904; JW5120" /codon_start=1 /transl_table=11 /product="ComEC family inner membrane protein" /protein_id="NP_415433.4" /db_xref="GI:90111187" /db_xref="ASAP:ABE-0003111" /db_xref="UniProtKB/Swiss-Prot:P37443" /db_xref="EcoGene:EG12375" /db_xref="GeneID:945531" /translation="MKITTVGVCIISGIFPLLILPQLPGTLTLAFLTLFACVLAFIPV KTVRYIALTLLFFVWGILSAKQILWAGETLTGATQDAIVEITATDGMTTHYGQITHLQ GRRIFPASGLVMYGEYLPQAVCAGQQWSMKLKVRAVHGQLNDGGFDSQRYAIAQHQPL TGRFLQASVIEPNCSLRAQYLASLQTTLQPYPWNAVILGLGMGERLSVPKEIKNIMRD TGTAHLMAISGLHIAFAALLAAGLIRSGQIFLPGRWIHWQIPLIGGICCAAFYAWLTG MQPPALRTMVALATWGMLKLSGRQWSGWDVWICCLAAILLMDPVAILSQSLWLSAAAV AALIFWYQWFPCPEWQLPPVLRAVVSLIHLQLGITLLLMPVQIVIFHGISLTSFIANL LAIPLVTFITVPLILAAMVVHLSGPLILEQGLWFLADRSLALLFWGLKSLPEGWINIA ECWQWLSFSPWFLLVVWRLNAWRTLPAMCVAGGLLMCWPLWQKPRPDEWQLYMLDVGQ GLAMVIARNGKAILYDTGLAWPEGDSGQQLIIPWLHWHNLEPEGVILSHEHLDHRGGL DSILHIWPMLWIRSPLNWEHHQPCVRGEAWQWQGLRFSAHWPLQGSNDKGNNHSCVVK VDDGTNSILLTGDIEAPAEQKMLSRYWQQVQATLLQVPHHGSNTSSSLPLIQRVNGKV ALASASRYNAWRLPSNKVKHRYQLQGYQWIDTPHQGQTTVNFSAQGWRISSLREQILP RWYHQWFGVPVDNG" gene 966621..968369 /gene="msbA" /locus_tag="b0914" /gene_synonym="ECK0905; JW0897" /db_xref="EcoGene:EG10613" /db_xref="GeneID:945530" CDS 966621..968369 /gene="msbA" /locus_tag="b0914" /gene_synonym="ECK0905; JW0897" /function="transport; Transport of small molecules: Other" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="ATP-binding transport protein; multicopy suppressor of htrB" /codon_start=1 /transl_table=11 /product="lipid ABC transporter permease/ATPase" /protein_id="NP_415434.1" /db_xref="GI:16128881" /db_xref="ASAP:ABE-0003113" /db_xref="UniProtKB/Swiss-Prot:P60752" /db_xref="EcoGene:EG10613" /db_xref="GeneID:945530" /translation="MHNDKDLSTWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFM LSLLKPLLDDGFGKTDRSVLVWMPLVVIGLMILRGITSYVSSYCISWVSGKVVMTMRR RLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMM FYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVL IFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM DSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRV IERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF YDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQI EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLL EHRGVYAQLHKMQFGQ" gene 968366..969352 /gene="lpxK" /locus_tag="b0915" /gene_synonym="ECK0906; JW0898; ycaH" /db_xref="EcoGene:EG11409" /db_xref="GeneID:945526" CDS 968366..969352 /gene="lpxK" /locus_tag="b0915" /gene_synonym="ECK0906; JW0898; ycaH" /EC_number="2.7.1.130" /function="putative enzyme; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009248 - K antigen biosynthetic process; GO:0009245 - lipid A biosynthetic process; GO:0009244 - lipopolysaccharide core region biosynthetic process" /codon_start=1 /transl_table=11 /product="lipid A 4'kinase" /protein_id="NP_415435.1" /db_xref="GI:16128882" /db_xref="ASAP:ABE-0003115" /db_xref="UniProtKB/Swiss-Prot:P27300" /db_xref="EcoGene:EG11409" /db_xref="GeneID:945526" /translation="MIEKIWSGESPLWRLLLPLSWLYGLVSGAIRLCYKLKLKRAWRA PVPVVVVGNLTAGGNGKTPVVVWLVEQLQQRGIRVGVVSRGYGGKAESYPLLLSADTT TAQAGDEPVLIYQRTDAPVAVSPVRSDAVKAILAQHPDVQIIVTDDGLQHYRLARDVE IVVIDGVRRFGNGWWLPAGPMRERAGRLKSVDAVIVNGGVPRSGEIPMHLLPGQAVNL RTGTRCDVAQLEHVVAMAGIGHPPRFFATLKMCGVQPEKCVPLADHQSLNHADVSALV SAGQTLVMTEKDAVKCRAFAEENWWYLPVDAQLSGDEPAKLLTQLTLLASGN" gene 969389..970621 /gene="ycaQ" /locus_tag="b0916" /gene_synonym="ECK0907; JW0899" /db_xref="EcoGene:EG13701" /db_xref="GeneID:945524" CDS 969389..970621 /gene="ycaQ" /locus_tag="b0916" /gene_synonym="ECK0907; JW0899" /codon_start=1 /transl_table=11 /product="DUF1006 family protein with C-terminal wHTH domain" /protein_id="NP_415436.1" /db_xref="GI:16128883" /db_xref="ASAP:ABE-0003117" /db_xref="UniProtKB/Swiss-Prot:P75843" /db_xref="EcoGene:EG13701" /db_xref="GeneID:945524" /translation="MSLPHLSLADARNLHLAAQGLLNKPRRRASLEDIPATISRMSLL QIDTINIVARSPYLVLFSRLGNYPAQWLDESLARGELMEYWAHEACFMPRSDFRLIRH RMLAPEKMGWKYKDAWMQEHEAEIAQLIQHIHDKGPVRSADFEHPRKGASGWWEWKPH KRHLEGLFTAGKVMVIERRNFQRVYDLTHRVMPDWDDERDLVSQTEAEIIMLDNSARS LGIFREQWLADYYRLKRPALAAWREARAEQQQIIAVHVEKLGNLWLHDDLLPLLERAL AGKLTATHSAVLSPFDPVVWDRKRAEQLFDFSYRLECYTPAPKRQYGYFVLPLLHRGQ LVGRMDAKMHRQTGILEVISLWLQEGIKPTTTLQKGLRQAITDFANWQQATRVTLGCC PQGLFTDCRTGWEIDPVA" gene 970673..970855 /gene="ycaR" /locus_tag="b0917" /gene_synonym="ECK0908; JW0900" /db_xref="EcoGene:EG14287" /db_xref="GeneID:945537" CDS 970673..970855 /gene="ycaR" /locus_tag="b0917" /gene_synonym="ECK0908; JW0900" /codon_start=1 /transl_table=11 /product="peroxide and acid resistance protein, UPF0434 family" /protein_id="NP_415437.1" /db_xref="GI:16128884" /db_xref="ASAP:ABE-0003120" /db_xref="UniProtKB/Swiss-Prot:P0AAZ7" /db_xref="EcoGene:EG14287" /db_xref="GeneID:945537" /translation="MDHRLLEIIACPVCNGKLWYNQEKQELICKLDNLAFPLRDGIPV LLETEARVLTADESKS" gene 970852..971598 /gene="kdsB" /locus_tag="b0918" /gene_synonym="ECK0909; JW0901" /db_xref="EcoGene:EG10519" /db_xref="GeneID:945539" CDS 970852..971598 /gene="kdsB" /locus_tag="b0918" /gene_synonym="ECK0909; JW0901" /EC_number="2.7.7.38" /function="enzyme; Surface polysaccharides & antigens" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009248 - K antigen biosynthetic process; GO:0009245 - lipid A biosynthetic process; GO:0009244 - lipopolysaccharide core region biosynthetic process" /note="CTP:CMP-3-deoxy-D-manno-octulosonate transferase" /codon_start=1 /transl_table=11 /product="3-deoxy-manno-octulosonate cytidylyltransferase" /protein_id="NP_415438.1" /db_xref="GI:16128885" /db_xref="ASAP:ABE-0003122" /db_xref="UniProtKB/Swiss-Prot:P04951" /db_xref="EcoGene:EG10519" /db_xref="GeneID:945539" /translation="MSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAER IIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEP MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATI PWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYG EKIHVAVAQEVPGTGVDTPEDLERVRAEMR" gene 971752..972645 /gene="ycbJ" /locus_tag="b0919" /gene_synonym="ECK0910; JW0902" /db_xref="EcoGene:EG13702" /db_xref="GeneID:945545" CDS 971752..972645 /gene="ycbJ" /locus_tag="b0919" /gene_synonym="ECK0910; JW0902" /codon_start=1 /transl_table=11 /product="protein kinase-like domain protein" /protein_id="NP_415439.1" /db_xref="GI:16128886" /db_xref="ASAP:ABE-0003125" /db_xref="UniProtKB/Swiss-Prot:P0AB03" /db_xref="EcoGene:EG13702" /db_xref="GeneID:945545" /translation="MEQLRAELSHLLGEKLSRIECVNEKADTALWALYDSQGNPMPLM ARSFSTPGKARQLAWKTTMLARSGTVRMPTIYGVMTHEEHPGPDVLLLERMRGVSVEA PARTPERWEQLKDQIVEALLAWHRQDSRGCVGAVDNTQENFWPSWYRQHVEVLWTTLN QFNNTGLTMQDKRILFRTRECLPALFEGFNDNCVLIHGNFCLRSMLKDSRSDQLLAMV GPGLMLWAPREYELFRLMDNSLAEDLLWSYLQRAPVAESFIWRRWLYVLWDEVAQLVN TGRFSRRNFDLASKSLLPWLA" gene complement(972622..973401) /gene="elyC" /locus_tag="b0920" /gene_synonym="ECK0911; JW0903; ycbC" /db_xref="EcoGene:EG12166" /db_xref="GeneID:945546" CDS complement(972622..973401) /gene="elyC" /locus_tag="b0920" /gene_synonym="ECK0911; JW0903; ycbC" /function="factor; Murein sacculus, peptidoglycan" /codon_start=1 /transl_table=11 /product="envelope biogenesis factor; DUF218 superfamily protein" /protein_id="NP_415440.1" /db_xref="GI:16128887" /db_xref="ASAP:ABE-0003127" /db_xref="UniProtKB/Swiss-Prot:P0AB01" /db_xref="EcoGene:EG12166" /db_xref="GeneID:945546" /translation="MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTGKIFIS IGWLALLLLSLQPVADRLLRPIESTYPTWNNSQKVDYIVVLGGGYTWNPQWAPSSNLI NNSLPRLNEGIRLWRENPGSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLD LPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPL NPWERAIPSPVWLMHSDRVGYETLGRIWQWLKGSSGEPRQE" gene 973537..974322 /gene="smtA" /locus_tag="b0921" /gene_synonym="ECK0912; JW0904; ycbD" /db_xref="EcoGene:EG12167" /db_xref="GeneID:945547" CDS 973537..974322 /gene="smtA" /locus_tag="b0921" /gene_synonym="ECK0912; JW0904; ycbD" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_process="GO:0006071 - glycerol metabolic process" /note="S-adenosylmethionine-dependent methyltransferase" /codon_start=1 /transl_table=11 /product="putative S-adenosyl-L-methionine-dependent methyltransferase" /protein_id="NP_415441.1" /db_xref="GI:16128888" /db_xref="ASAP:ABE-0003131" /db_xref="UniProtKB/Swiss-Prot:P36566" /db_xref="EcoGene:EG12167" /db_xref="GeneID:945547" /translation="MQDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQ KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAA QDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNM VAGNFDYVQAGMPKKKKRTLSPDYPRDPAQVYLWLEEAGWQIMGKTGVRVFHDYLREK HQQRDCYEALLELETRYCRQEPYITLGRYIHVTARKPQSKDKV" gene 974319..975641 /gene="mukF" /locus_tag="b0922" /gene_synonym="ECK0913; JW0905; kicB" /db_xref="EcoGene:EG12165" /db_xref="GeneID:945548" CDS 974319..975641 /gene="mukF" /locus_tag="b0922" /gene_synonym="ECK0913; JW0905; kicB" /function="factor; Cell killing" /note="mukF protein (killing factor KICB)" /codon_start=1 /transl_table=11 /product="chromosome condensin MukBEF, kleisin-like subunit, binds calcium" /protein_id="NP_415442.1" /db_xref="GI:16128889" /db_xref="ASAP:ABE-0003134" /db_xref="UniProtKB/Swiss-Prot:P60293" /db_xref="EcoGene:EG12165" /db_xref="GeneID:945548" /translation="MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLD GEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYR LTPLGIGITDYYIRQREFSTLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPL KYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL QDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIG YDRHVHKFIRTAIDMDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALR DEEVTGELPEDLEYEEFNEIREQLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRA RHFDVARIVIDQAVRLGVAQADFTGLPAKWQPINDYGAKVQAHVIDKY" gene 975622..976326 /gene="mukE" /locus_tag="b0923" /gene_synonym="ECK0914; JW0906; kicA; ycbA" /db_xref="EcoGene:EG11252" /db_xref="GeneID:945550" CDS 975622..976326 /gene="mukE" /locus_tag="b0923" /gene_synonym="ECK0914; JW0906; kicA; ycbA" /codon_start=1 /transl_table=11 /product="chromosome condensin MukBEF, MukE localization factor" /protein_id="NP_415443.2" /db_xref="GI:226524705" /db_xref="ASAP:ABE-0003136" /db_xref="UniProtKB/Swiss-Prot:P22524" /db_xref="EcoGene:EG11252" /db_xref="GeneID:945550" /translation="MSSTNIEQVMPVKLAQALANPLFPALDSALRSGRHIGLDELDNH AFLMDFQEYLEEFYARYNVELIRAPEGFFYLRPRSTTLIPRSVLSELDMMVGKILCYL YLSPERLANEGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLN RLRRLGMVWFMGHDSSKFRITESVFRFGADVRAGDDPREAQRRLIRDGEAMPIENHLQ LNDETEENQPDSGEEE" gene 976326..980786 /gene="mukB" /locus_tag="b0924" /gene_synonym="ECK0915; JW0907" /db_xref="EcoGene:EG10618" /db_xref="GeneID:945549" CDS 976326..980786 /gene="mukB" /locus_tag="b0924" /gene_synonym="ECK0915; JW0907" /function="structural component; Cell division" /experiment="N-terminus verified by Edman degradation: PMID 1464330" /note="kinesin-like cell division protein involved in chromosome partitioning" /codon_start=1 /transl_table=11 /product="chromosome condensin MukBEF, ATPase and DNA-binding subunit" /protein_id="NP_415444.1" /db_xref="GI:16128891" /db_xref="ASAP:ABE-0003138" /db_xref="UniProtKB/Swiss-Prot:P22523" /db_xref="EcoGene:EG10618" /db_xref="GeneID:945549" /translation="MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTM AAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVV GVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPLNELKDKLEAM EGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLR DYLLPENSGVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMR HANERRVHLDKALEFRRELHTSRQQLAAEQYKHVDMARELAEHNGAEGDLEADYQAAS DHLNLVQTALRQQEKIERYEADLDELQIRLEEQNEVVAEAIERQQENEARAEAAELEV DELKSQLADYQQALDVQQTRAIQYNQAIAALNRAKELCHLPDLTADCAAEWLETFQAK ELEATEKMLSLEQKMSMAQTAHSQFEQAYQLVVAINGPLARNEAWDVARELLREGVDQ RHLAEQVQPLRMRLSELEQRLREQQEAERLLADFCKRQGKNFDIDELEALHQELEARI ASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTS SQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQPGGSEDQRLNALAERFG GVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQVTEHLEGLTDCPEDLYLIEGD PQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVPLFGRAARESRIESLHAEREVLS ERFATLSFDVQKTQRLHQAFSRFIGSHLAVAFESDPEAEIRQLNSRRVELERALSNHE NDNQQQRIQFEQAKEGVTALNRILPRLNLLADDSLADRVDEIRERLDEAQEAARFVQQ FGNQLAKLEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQQAFALTEVVQRRAHFSY SDSAEMLSGNSDLNEKLRERLEQAEAERTRAREALRGHAAQLSQYNQVLASLKSSYDT KKELLNDLQRELQDIGVRADSGAEERARIRRDELHAQLSNNRSRRNQLEKALTFCEAE MDNLTRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAYLSADDL RSMSDKALGALRLAVADNEHLRDVLRMSEDPKRPERKIQFFVAVYQHLRERIRQDIIR TDDPVEAIEQMEIELSRLTEELTSREQKLAISSRSVANIIRKTIQREQNRIRMLNQGL QNVSFGQVNSVRLNVNVRETHAMLLDVLSEQHEQHQDLFNSNRLTFSEALAKLYQRLN PQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLRAESGALSTGEAIGTGMSIL VMVVQSWEDESRRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLQMQLIIAAPE NISPEKGTTYKLVRKVFQNTEHVHVVGLRGFAPQLPETLPGTDEAPSQAS" gene 981047..982894 /gene="ldtD" /locus_tag="b0925" /gene_synonym="ECK0916; JW0908; ycbB" /db_xref="EcoGene:EG11253" /db_xref="GeneID:945541" CDS 981047..982894 /gene="ldtD" /locus_tag="b0925" /gene_synonym="ECK0916; JW0908; ycbB" /function="enzyme; Murein sacculus, peptidoglycan" /note="putative amidase" /codon_start=1 /transl_table=11 /product="murein L,D-transpeptidase" /protein_id="NP_415445.1" /db_xref="GI:16128892" /db_xref="ASAP:ABE-0003142" /db_xref="UniProtKB/Swiss-Prot:P22525" /db_xref="EcoGene:EG11253" /db_xref="GeneID:945541" /translation="MLLNMMCGRQLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAV SEQGEALPQAQATAIMAGIQPLPEGAAEKARTQIESQLPAGYKPVYLNQLQLLYAARD MQPMWENRDAVKAFQQQLAEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGY LHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQYA AMHESLLALLCDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPGD DTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGL GADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTELSTGIMVNIPAYSLVYYQNG NQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESH GYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYL HDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDAGWNDKRISDALKQGDTRYVNI RQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSSSQIVSKAEQLIR" gene 983075..983623 /gene="ycbK" /locus_tag="b0926" /gene_synonym="ECK0917; JW0909" /db_xref="EcoGene:EG13703" /db_xref="GeneID:945538" CDS 983075..983623 /gene="ycbK" /locus_tag="b0926" /gene_synonym="ECK0917; JW0909" /codon_start=1 /transl_table=11 /product="M15A protease-related family periplasmic protein" /protein_id="NP_415446.1" /db_xref="GI:16128893" /db_xref="ASAP:ABE-0003145" /db_xref="UniProtKB/Swiss-Prot:P0AB06" /db_xref="EcoGene:EG13703" /db_xref="GeneID:945538" /translation="MDKFDANRRKLLALGGVALGAAILPTPAFATLSTPRPRILTLNN LHTGESIKAEFFDGRGYIQEELAKLNHFFRDYRANKIKSIDPGLFDQLYRLQGLLGTR KPVQLISGYRSIDTNNELRARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRA GGVGYYPRSNFVHIDTGPARHW" gene 983650..984297 /gene="ycbL" /locus_tag="b0927" /gene_synonym="ECK0918; JW0910" /db_xref="EcoGene:EG13704" /db_xref="GeneID:945551" CDS 983650..984297 /gene="ycbL" /locus_tag="b0927" /gene_synonym="ECK0918; JW0910" /codon_start=1 /transl_table=11 /product="putative metal-binding enzyme" /protein_id="NP_415447.1" /db_xref="GI:16128894" /db_xref="ASAP:ABE-0003147" /db_xref="UniProtKB/Swiss-Prot:P75849" /db_xref="EcoGene:EG13704" /db_xref="GeneID:945551" /translation="MNYRIIPVTAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDD SGLTLMQILLTHGHLDHVGAAAELAQHYGVPVFGPEKEDEFWLQGLPAQSRMFGLEEC QPLTPDRWLNEGDTISIGNVTLQVLHCPGHTPGHVVFFDDRAKLLISGDVIFKGGVGR SDFPRGDHNQLISSIKDKLLPLGDDVIFIPGHGPLSTLGYERLHNPFLQDEMPVW" repeat_region 984361..984458 /note="RIP86 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(984519..985709) /gene="aspC" /locus_tag="b0928" /gene_synonym="ECK0919; JW0911" /db_xref="EcoGene:EG10096" /db_xref="GeneID:945553" CDS complement(984519..985709) /gene="aspC" /locus_tag="b0928" /gene_synonym="ECK0919; JW0911" /EC_number="2.6.1.1" /function="enzyme; Amino acid biosynthesis: Aspartate" /experiment="N-terminus verified by Edman degradation: PMID 387032,3298240,6378205,9298646,11736651" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006532 - aspartate biosynthetic process; GO:0009063 - cellular amino acid catabolic process" /note="aspartate aminotransferase" /codon_start=1 /transl_table=11 /product="aspartate aminotransferase, PLP-dependent" /protein_id="NP_415448.1" /db_xref="GI:16128895" /db_xref="ASAP:ABE-0003150" /db_xref="UniProtKB/Swiss-Prot:P00509" /db_xref="EcoGene:EG10096" /db_xref="GeneID:945553" /translation="MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTP VLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPG GTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFA RGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMK AAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA NRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAI VAVL" gene complement(985894..986982) /gene="ompF" /locus_tag="b0929" /gene_synonym="cmlB; coa; cry; ECK0920; JW0912; nfxB?; tolF" /db_xref="EcoGene:EG10671" /db_xref="GeneID:945554" CDS complement(985894..986982) /gene="ompF" /locus_tag="b0929" /gene_synonym="cmlB; coa; cry; ECK0920; JW0912; nfxB?; tolF" /function="membrane; Outer membrane constituents" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="outer membrane protein 1a (Ia;b;F)" /codon_start=1 /transl_table=11 /product="outer membrane porin 1a (Ia;b;F)" /protein_id="NP_415449.1" /db_xref="GI:16128896" /db_xref="ASAP:ABE-0003153" /db_xref="UniProtKB/Swiss-Prot:P02931" /db_xref="EcoGene:EG10671" /db_xref="GeneID:945554" /translation="MMKRNILAVIVPALLVAGTANAAEIYNKDGNKVDLYGKAVGLHY FSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNK TRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVAT YRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADR TNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKT QDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVD YIINQIDSDNKLGVGSDDTVAVGIVYQF" gene complement(987585..988985) /gene="asnS" /locus_tag="b0930" /gene_synonym="ECK0921; JW0913; lcs; tss" /db_xref="EcoGene:EG10094" /db_xref="GeneID:945555" CDS complement(987585..988985) /gene="asnS" /locus_tag="b0930" /gene_synonym="ECK0921; JW0913; lcs; tss" /EC_number="6.1.1.22" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="asparagine tRNA synthetase" /codon_start=1 /transl_table=11 /product="asparaginyl tRNA synthetase" /protein_id="NP_415450.1" /db_xref="GI:16128897" /db_xref="ASAP:ABE-0003162" /db_xref="UniProtKB/Swiss-Prot:P0A8M0" /db_xref="EcoGene:EG10094" /db_xref="GeneID:945555" /translation="MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDG SCFDPVQAVINNSLPNYNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGW VEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWV STPLITASDTEGAGEMFRVSTLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGET YACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKA VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENCGRKFENPVYWG VDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIG GSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQN VRDVIPFPRTPRNASF" gene complement(989154..990356) /gene="pncB" /locus_tag="b0931" /gene_synonym="ECK0922; JW0914" /db_xref="EcoGene:EG10742" /db_xref="GeneID:946648" CDS complement(989154..990356) /gene="pncB" /locus_tag="b0931" /gene_synonym="ECK0922; JW0914" /EC_number="6.3.4.21" /function="enzyme; Biosynthesis of cofactors, carriers: Pyridine nucleotide" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0009435 - NAD biosynthetic process" /codon_start=1 /transl_table=11 /product="nicotinate phosphoribosyltransferase" /protein_id="NP_415451.1" /db_xref="GI:16128898" /db_xref="ASAP:ABE-0003167" /db_xref="UniProtKB/Swiss-Prot:P18133" /db_xref="EcoGene:EG10742" /db_xref="GeneID:946648" /translation="MTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVHVAAEFRCRGD DLLGIYADAIREQVQAMQHLRLQDDEYQWLSALPFFKADYLNWLREFRFNPEQVTVSN DNGKLDIRLSGPWREVILWEVPLLAVISEMVHRYRSPQADVAQALDTLESKLVDFSAL TAGLDMSRFHLMDFGTRRRFSREVQETIVKRLQQESWFVGTSNYDLARRLSLTPMGTQ AHEWFQAHQQISPDLANSQRAALAAWLEEYPDQLGIALTDCITMDAFLRDFGVEFASR YQGLRHDSGDPVEWGEKAIAHYEKLGIDPQSKTLVFSDNLDLRKAVELYRHFSSRVQL SFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFD LPHIKKAS" gene 990622..993234 /gene="pepN" /locus_tag="b0932" /gene_synonym="ECK0923; JW0915" /db_xref="EcoGene:EG10696" /db_xref="GeneID:947253" CDS 990622..993234 /gene="pepN" /locus_tag="b0932" /gene_synonym="ECK0923; JW0915" /EC_number="3.4.11.2" /function="enzyme; Degradation of proteins, peptides, glyco" /experiment="N-terminus verified by Edman degradation: PMID 2869947" /codon_start=1 /transl_table=11 /product="aminopeptidase N" /protein_id="NP_415452.1" /db_xref="GI:16128899" /db_xref="ASAP:ABE-0003171" /db_xref="UniProtKB/Swiss-Prot:P04825" /db_xref="EcoGene:EG10696" /db_xref="GeneID:947253" /translation="MTQQPQAKYRHDYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVR HGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEEGALVISNLPERFTLKIINEISPAA NTALEGLYQSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNGN RVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRG NLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYV LARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDL GSRAVNRINNVRTMRGLQFAEDASPMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIH TLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHFRRWYSQSGTPIVTV KDDYNPETEQYTLTISQRTPATPDQAEKQPLHIPFAIELYDNEGKVIPLQKGGHPVNS VLNVTQAEQTFVFDNVYFQPVPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWD AAQSLLATYIKLNVARHQQGQPLSLPVHVADAFRAVLLDEKIDPALAAEILTLPSVNE MAELFDIIDPIAIAEVREALTRTLATELADELLAIYNANYQSEYRVEHEDIAKRTLRN ACLRFLAFGETHLADVLVSKQFHEANNMTDALAALSAAVAAQLPCRDALMQEYDDKWH QNGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFH AEDGSGYLFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLEN LSGDLYEKITKALA" gene complement(993277..994044) /gene="ssuB" /locus_tag="b0933" /gene_synonym="ECK0924; JW0916; ycbE" /db_xref="EcoGene:EG12358" /db_xref="GeneID:947220" CDS complement(993277..994044) /gene="ssuB" /locus_tag="b0933" /gene_synonym="ECK0924; JW0916; ycbE" /function="transport; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006790 - sulfur metabolic process" /note="ATP-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="aliphatic sulfonate ABC transporter ATPase" /protein_id="NP_415453.1" /db_xref="GI:16128900" /db_xref="ASAP:ABE-0003173" /db_xref="UniProtKB/Swiss-Prot:P0AAI1" /db_xref="EcoGene:EG12358" /db_xref="GeneID:947220" /translation="MNTARLNQGTPLLLNAVSKHYAENIVLNQLDLHIPAGQFVAVVG RSGGGKSTLLRLLAGLETPTAGDVLAGTTPLAEIQEDTRMMFQDARLLPWKSVIDNVG LGLKGQWRDAARRALAAVGLENRAGEWPAALSGGQKQRVALARALIHRPGLLLLDEPL GALDALTRLEMQDLIVSLWQEHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD IPRPRRLGSVRLAELEAEVLQRVMQRGESETRLRKQG" gene complement(994041..994832) /gene="ssuC" /locus_tag="b0934" /gene_synonym="ECK0925; JW5121; ycbM" /db_xref="EcoGene:EG13705" /db_xref="GeneID:947216" CDS complement(994041..994832) /gene="ssuC" /locus_tag="b0934" /gene_synonym="ECK0925; JW5121; ycbM" /function="putative transport; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall; GO:0042597 - periplasmic space" /GO_process="GO:0006793 - phosphorus metabolic process" /note="membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="aliphatic sulfonate ABC transporter permease" /protein_id="NP_415454.4" /db_xref="GI:90111188" /db_xref="ASAP:ABE-0003175" /db_xref="UniProtKB/Swiss-Prot:P75851" /db_xref="EcoGene:EG13705" /db_xref="GeneID:947216" /translation="MATPVKKWLLRVAPWFLPVGIVAVWQLASSVGWLSTRILPSPEG VVTAFWTLSASGELWQHLAISSWRALIGFSIGGSLGLILGLISGLSRWGERLLDTSIQ MLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIRNIDRGLVEMARS YGLSGIPLFIHVILPGALPSIMVGVRFALGLMWLTLIVAETISANSGIGYLAMNAREF LQTDVVVVAIILYALLGKLADVSAQLLERLWLRWNPAYHLKEATV" gene complement(994843..995988) /gene="ssuD" /locus_tag="b0935" /gene_synonym="ECK0926; JW0918; ssi6; ycbN" /db_xref="EcoGene:EG13706" /db_xref="GeneID:945557" CDS complement(994843..995988) /gene="ssuD" /locus_tag="b0935" /gene_synonym="ECK0926; JW0918; ssi6; ycbN" /EC_number="1.14.14.5" /GO_process="GO:0006790 - sulfur metabolic process" /codon_start=1 /transl_table=11 /product="alkanesulfonate monooxygenase, FMNH(2)-dependent" /protein_id="NP_415455.1" /db_xref="GI:16128902" /db_xref="ASAP:ABE-0003178" /db_xref="UniProtKB/Swiss-Prot:P80645" /db_xref="EcoGene:EG13706" /db_xref="GeneID:945557" /translation="MSLNMFWFLPTHGDGHYLGTEEGSRPVDHGYLQQIAQAADRLGY TGVLIPTGRSCEDAWLVAASMIPVTQRLKFLVALRPSVTSPTVAARQAATLDRLSNGR ALFNLVTGSDPQELAGDGVFLDHSERYEASAEFTQVWRRLLQRETVDFNGKHIHVRGA KLLFPAIQQPYPPLYFGGSSDVAQELAAEQVDLYLTWGEPPELVKEKIEQVRAKAAAH GRKIRFGIRLHVIVRETNDEAWQAAERLISHLDDETIAKAQAAFARTDSVGQQRMAAL HNGKRDNLEISPNLWAGVGLVRGGAGTALVGDGPTVAARINEYAALGIDSFVLSGYPH LEEAYRVGELLFPLLDVAIPEIPQPQPLNPQGEAVANDFIPRKVAQS" gene complement(995985..996944) /gene="ssuA" /locus_tag="b0936" /gene_synonym="ECK0927; JW0919; ycbO" /db_xref="EcoGene:EG13707" /db_xref="GeneID:945560" CDS complement(995985..996944) /gene="ssuA" /locus_tag="b0936" /gene_synonym="ECK0927; JW0919; ycbO" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006793 - phosphorus metabolic process" /note="periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="aliphatic sulfonate ABC transporter periplasmic binding protein" /protein_id="NP_415456.4" /db_xref="GI:90111189" /db_xref="ASAP:ABE-0003180" /db_xref="UniProtKB/Swiss-Prot:P75853" /db_xref="EcoGene:EG13707" /db_xref="GeneID:945560" /translation="MRNIIKLALAGLLSVSTFAVAAESSPEALRIGYQKGSIGMVLAK SHQLLEKRYPESKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVG VEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQP TYLTPADARAAFQQGNVDAWAIWDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPY AEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMGLPAPVIASYLDHRPPTTIKP VNAEVAALQQQTADLFYENRLVPKKVDIRQRIWQPTQLEGKQL" gene complement(996937..997512) /gene="ssuE" /locus_tag="b0937" /gene_synonym="ECK0928; JW0920; ssi4; ycbP" /db_xref="EcoGene:EG13708" /db_xref="GeneID:945947" CDS complement(996937..997512) /gene="ssuE" /locus_tag="b0937" /gene_synonym="ECK0928; JW0920; ssi4; ycbP" /EC_number="1.5.1.38" /experiment="N-terminus verified by Edman degradation: PMID 8774726" /GO_function="GO:0009055 - electron carrier activity" /GO_process="GO:0042594 - response to starvation; GO:0006790 - sulfur metabolic process" /codon_start=1 /transl_table=11 /product="NAD(P)H-dependent FMN reductase" /protein_id="NP_415457.1" /db_xref="GI:16128904" /db_xref="ASAP:ABE-0003182" /db_xref="UniProtKB/Swiss-Prot:P80644" /db_xref="EcoGene:EG13708" /db_xref="GeneID:945947" /translation="MRVITLAGSPRFPSRSSSLLEYAREKLNGLDVEVYHWNLQNFAP EDLLYARFDSPALKTFTEQLQQADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVV LPLATGGTVAHLLAVDYALKPVLSALKAQEILHGVFADDSQVIDYHHRPQFTPNLQTR LDTALETFWQALHRRDVQVPDLLSLRGNAHA" gene 997868..998407 /gene="elfA" /locus_tag="b0938" /gene_synonym="ECK0929; JW5122; ycbQ" /db_xref="EcoGene:EG13709" /db_xref="GeneID:948306" CDS 997868..998407 /gene="elfA" /locus_tag="b0938" /gene_synonym="ECK0929; JW5122; ycbQ" /function="structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="putative fimbrial-like protein" /codon_start=1 /transl_table=11 /product="laminin-binding fimbrin subunit" /protein_id="NP_415458.2" /db_xref="GI:90111190" /db_xref="ASAP:ABE-0003185" /db_xref="UniProtKB/Swiss-Prot:P75855" /db_xref="EcoGene:EG13709" /db_xref="GeneID:948306" /translation="MKKSVLTAFITVVCATSSVMAADDNAITDGSVTFNGKVIAPACT LVAATKDSVVTLPDVSATKLQTNGQVSGVQIDVPIELKDCDTTVTKNATFTFNGTADT TQITAFANQASSDAATNVALQMYMNDGTTAITPDTETGNILLQDGDQTLTFKVDYIAT GKATSGNVNAVTNFHINYY" gene 998490..999191 /gene="elfD" /locus_tag="b0939" /gene_synonym="ECK0930; JW0922; ycbR" /db_xref="EcoGene:EG13710" /db_xref="GeneID:946773" CDS 998490..999191 /gene="elfD" /locus_tag="b0939" /gene_synonym="ECK0930; JW0922; ycbR" /function="putative factor; Surface structures" /GO_process="GO:0006457 - protein folding" /codon_start=1 /transl_table=11 /product="putative periplasmic pilin chaperone" /protein_id="NP_415459.1" /db_xref="GI:16128906" /db_xref="ASAP:ABE-0003187" /db_xref="UniProtKB/Swiss-Prot:P75856" /db_xref="EcoGene:EG13710" /db_xref="GeneID:946773" /translation="MKTCITKGIVTVSLTAILLSCSSAWAAGKGGIGLAATRLVYSEG EEQISLGVRNTSPDVPYLIQSWVMTPDNKKSADFIITPPLFVLNPANENLLRIMYIGA PLAKDRETLFFTSVRAVPSTTKRKEGNTLKIATQSVIKLFWRPKGLAYPLGEAPAKLR CTSSADMVTVSNPTPYFITLTDLKIGGKVVKNQMISPFDKYQFSLPKGAKNSSVTYRT INDYGAETPQLNCKS" gene 999216..1001816 /gene="elfC" /locus_tag="b0940" /gene_synonym="ECK0931; JW0923; ycbS" /db_xref="EcoGene:EG13711" /db_xref="GeneID:946934" CDS 999216..1001816 /gene="elfC" /locus_tag="b0940" /gene_synonym="ECK0931; JW0923; ycbS" /function="putative membrane; Outer membrane constituents" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative outer membrane fimbrial subunit export usher protein" /protein_id="NP_415460.1" /db_xref="GI:16128907" /db_xref="ASAP:ABE-0003189" /db_xref="UniProtKB/Swiss-Prot:P75857" /db_xref="EcoGene:EG13711" /db_xref="GeneID:946934" /translation="MYRTHRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFDPAFF KDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVDTRNVNFVEITPEKGIAACLTTE SLDAMGVNTDAFPAFKQLDKQACVPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR GYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNS TWSRSSGQTAEWKNLSSYLQRAVIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNM LPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEISDLYSTSSSGDLLVE IKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESKFAQATLQWGGP WGTTWYGGGQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLY AKTLNHLGTNFQLMGYRYSTSGFYTLSDTMYKHMDGYEFNDGDDEDTPMWSRYYNLFY TKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSLGISWNY SKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKKNYAWMTSNTSIDNEGHTTQNLG LTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQLNY ALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVANSTGLKTDWRGYTVVPYATSY RENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRF GAIATLDGVQANSGIIDDDGSLYMAGLPAKGTISVRWGEAPDQICHINYELTEQQINS AITRMDAICR" gene 1001807..1002877 /gene="elfG" /locus_tag="b0941" /gene_synonym="ECK0932; JW0924; ycbT" /db_xref="EcoGene:EG13712" /db_xref="GeneID:947185" CDS 1001807..1002877 /gene="elfG" /locus_tag="b0941" /gene_synonym="ECK0932; JW0924; ycbT" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_415461.1" /db_xref="GI:16128908" /db_xref="ASAP:ABE-0003191" /db_xref="UniProtKB/Swiss-Prot:P75858" /db_xref="EcoGene:EG13712" /db_xref="GeneID:947185" /translation="MQIIFGEKCVSLLRLFFAAVLMLWCAQTAAYSGQCHTTQGNPYI GVNFGVKTLEEEANTAGVVKDKFYQWNESNDYYVSCDCDKDNVRSGRWAFAADSPLVY LGDNWYKINDYLAAKVLLQVKGSSPTAVPFENVGTGGDTRWHICDPGGQRLGGQGASG NSGSFSLKILQPFVGSVVIPPMALARLYECYNIPAGDSCTTTGTPVLVYYLSGTINSL GSCSVNAGETIEVDLGDVFAANFRVVGHKPLGARTAELAIPVRCNTGNAGLVNVNLSL TATTDPSYPQAIKTSRPGVGVVVTDSQNNIISPAGGTLPLSIPDDADSIARMNVYPVS TTGVPPETGRFEATATVRINFD" gene 1002889..1003431 /gene="ycbU" /locus_tag="b0942" /gene_synonym="ECK0933; JW0925" /db_xref="EcoGene:EG13713" /db_xref="GeneID:945561" CDS 1002889..1003431 /gene="ycbU" /locus_tag="b0942" /gene_synonym="ECK0933; JW0925" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="putative fimbrial-like protein" /codon_start=1 /transl_table=11 /product="putative fimbriae protein" /protein_id="NP_415462.1" /db_xref="GI:16128909" /db_xref="ASAP:ABE-0003193" /db_xref="UniProtKB/Swiss-Prot:P75859" /db_xref="EcoGene:EG13713" /db_xref="GeneID:945561" /translation="MKKKTIFQCVILFFSILNIHVGMAGPEQVSMHIYGNVVDQGCDV ATKSALQNIHIGDFNISDFQAANTVSTAADLNIDITGCAAGITGADVLFSGEADTLAP TLLKLTDTGGSGGMATGIAVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKST KAGATGGNATAVLYFDLVYQ" gene 1003439..1003954 /gene="ycbV" /locus_tag="b0943" /gene_synonym="ECK0934; JW5123" /db_xref="EcoGene:EG13714" /db_xref="GeneID:945562" CDS 1003439..1003954 /gene="ycbV" /locus_tag="b0943" /gene_synonym="ECK0934; JW5123" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="putative fimbrial-like protein" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_415463.2" /db_xref="GI:90111191" /db_xref="ASAP:ABE-0003195" /db_xref="UniProtKB/Swiss-Prot:P75860" /db_xref="EcoGene:EG13714" /db_xref="GeneID:945562" /translation="MLKRIIWILFLLGLTWGCELFAHDGTVNISGSFRRNTCVLAQDS KQINVQLGDVSLTRFSHGNYGPEKSFIINLQDCGTDVSTVDVTFSGTPDGVQSEMLSI ESGTDAASGLAIAILDDAKILIPLNQASKDYSLHSGKVPLTFYAQLRPVNSDVQSGKV NASATFVLHYD" gene 1003947..1004657 /gene="ycbF" /locus_tag="b0944" /gene_synonym="ECK0935; JW5124" /db_xref="EcoGene:EG12397" /db_xref="GeneID:945559" CDS 1003947..1004657 /gene="ycbF" /locus_tag="b0944" /gene_synonym="ECK0935; JW5124" /function="putative factor; Surface structures" /GO_process="GO:0006457 - protein folding" /codon_start=1 /transl_table=11 /product="putative periplasmic pilin chaperone" /protein_id="NP_415464.4" /db_xref="GI:90111192" /db_xref="ASAP:ABE-0003197" /db_xref="UniProtKB/Swiss-Prot:P40876" /db_xref="EcoGene:EG12397" /db_xref="GeneID:945559" /translation="MTNTWNRLALLIFAVLSLLVAGELQAGVVVGGTRFIFPADRESI SILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRT ESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQL RWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNVGVVPPKSQRQTSWCQAIAPCHVAW RAINDYGGLSAKKEQNLP" gene 1004768..1005778 /gene="pyrD" /locus_tag="b0945" /gene_synonym="ECK0936; JW0928" /db_xref="EcoGene:EG10807" /db_xref="GeneID:945556" CDS 1004768..1005778 /gene="pyrD" /locus_tag="b0945" /gene_synonym="ECK0936; JW0928" /EC_number="1.3.5.2" /function="enzyme; Pyrimidine ribonucleotide biosynthesis" /experiment="N-terminus verified by Edman degradation: PMID 2992959" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006221 - pyrimidine nucleotide biosynthetic process" /note="dihydro-orotate dehydrogenase" /codon_start=1 /transl_table=11 /product="dihydro-orotate oxidase, FMN-linked" /protein_id="NP_415465.1" /db_xref="GI:16128912" /db_xref="ASAP:ABE-0003201" /db_xref="UniProtKB/Swiss-Prot:P0A7E1" /db_xref="EcoGene:EG10807" /db_xref="GeneID:945556" /translation="MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPA KPVNCMGLTFKNPLGLAAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFR LVDAEGLINRMGFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICME KIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKI APDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKST EIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVT HI" gene 1005952..1006494 /gene="zapC" /locus_tag="b0946" /gene_synonym="ECK0937; JW5125; ycbW" /db_xref="EcoGene:EG13715" /db_xref="GeneID:945552" CDS 1005952..1006494 /gene="zapC" /locus_tag="b0946" /gene_synonym="ECK0937; JW5125; ycbW" /codon_start=1 /transl_table=11 /product="FtsZ stabilizer" /protein_id="NP_415466.4" /db_xref="GI:90111193" /db_xref="ASAP:ABE-0003204" /db_xref="UniProtKB/Swiss-Prot:P75862" /db_xref="EcoGene:EG13715" /db_xref="GeneID:945552" /translation="MRIKPDDNWRWYYDEEHDRMMLDLANGMLFRSRFARKMLTPDAF SPAGFCVDDAALYFSFEEKCRDFNLSKEQKAELVLNALVAIRYLKPQMPKSWHFVSHG EMWVPMPGDAACVWLSDTHEQVNLLVVESGENAALCLLAQPCVVIAGRAMQLGDAIKI MNDRLKPQVNVDSFSLEQAV" gene complement(1006491..1007600) /gene="ycbX" /locus_tag="b0947" /gene_synonym="ECK0938; JW5126" /db_xref="EcoGene:EG13716" /db_xref="GeneID:945563" CDS complement(1006491..1007600) /gene="ycbX" /locus_tag="b0947" /gene_synonym="ECK0938; JW5126" /GO_function="GO:0009055 - electron carrier activity" /codon_start=1 /transl_table=11 /product="6-N-hydroxylaminopurine detoxification oxidoreductase" /protein_id="NP_415467.1" /db_xref="GI:16128914" /db_xref="ASAP:ABE-0003206" /db_xref="UniProtKB/Swiss-Prot:P75863" /db_xref="EcoGene:EG13716" /db_xref="GeneID:945563" /translation="MATLIRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGT FITARQFPQMVRFTPSPVHDGLHLTAPDGSSAYVRFADFATQDAPTEVWGTHFTARIA PDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQ RCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQ KHPAGEPLKTLQSFRTAQDNGDVDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAAA ADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQ LLEGEVTPLKKSAMGDDGTILCCSCVPKTALKLAR" gene 1007844..1009952 /gene="rlmL" /locus_tag="b0948" /gene_synonym="ECK0939; JW0931; rlmK; rlmKL; ycbY" /db_xref="EcoGene:EG13717" /db_xref="GeneID:945564" CDS 1007844..1009952 /gene="rlmL" /locus_tag="b0948" /gene_synonym="ECK0939; JW0931; rlmK; rlmKL; ycbY" /function="enzyme; rRNA modification" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent" /protein_id="NP_415468.1" /db_xref="GI:16128915" /db_xref="ASAP:ABE-0003211" /db_xref="UniProtKB/Swiss-Prot:P75864" /db_xref="EcoGene:EG13717" /db_xref="GeneID:945564" /translation="MNSLFASTARGLEELLKTELENLGAVECQVVQGGVHFKGDTRLV YQSLMWSRLASRIMLPLGECKVYSDLDLYLGVQAINWTEMFNPGATFAVHFSGLNDTI RNSQYGAMKVKDAIVDAFTRKNLPRPNVDRDAPDIRVNVWLHKETASIALDLSGDGLH LRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGL HRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNAR LAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK NQFGGWNLSLFSASPDLLSCLQLRADKQYKAKNGPLDCVQKNYHVAESTPDSKPAMVA EDYTNRLRKNLKKFEKWARQEGIECYRLYDADLPEYNVAVDRYADWVVVQEYAPPKTI DAHKARQRLFDIIAATISVLGIAPNKLVLKTRERQKGKNQYQKLGEKGEFLEVTEYNA HLWVNLTDYLDTGLFLDHRIARRMLGQMSKGKDFLNLFSYTGSATVHAGLGGARSTTT VDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKR MEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEITQKT LSQDFARNRQIHNCWLITAA" gene 1009964..1011871 /gene="uup" /locus_tag="b0949" /gene_synonym="ECK0940; JW0932; ycbH; ycbI" /db_xref="EcoGene:EG13134" /db_xref="GeneID:945566" CDS 1009964..1011871 /gene="uup" /locus_tag="b0949" /gene_synonym="ECK0940; JW0932; ycbH; ycbI" /function="factor; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="replication regulatory ABC-F family DNA-binding ATPase" /protein_id="NP_415469.1" /db_xref="GI:16128916" /db_xref="ASAP:ABE-0003213" /db_xref="UniProtKB/Swiss-Prot:P43672" /db_xref="EcoGene:EG13134" /db_xref="GeneID:945566" /translation="MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKST LMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYH DISRLVMNDPSEKNLNELAKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGG WLRKAALGRALVSNPRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRN MATRIVDLDRGKLVTYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKA RRTRNEGRVRALKAMRRERGERREVMGTAKMQVEEASRSGKIVFEMEDVCYQVNGKQL VKDFSAQVLRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRA ELDPDKTVMDNLAEGKQEVMVNGKPRHVLGYLQDFLFHPKRAMTPVRALSGGERNRLL LARLFLKPSNLLILDEPTNDLDVETLELLEELIDSYQGTVLLVSHDRQFVDNTVTECW IFEGGGKIGRYVGGYHDARGQQEQYVALKQPAVKKTEEAAAAKAETVKRSSSKLSYKL QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER WEYLEALKNGG" repeat_region 1011919..1011947 /note="REP87 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 1012001..1013254 /gene="pqiA" /locus_tag="b0950" /gene_synonym="ECK0941; JW0933; pqi5" /db_xref="EcoGene:EG12965" /db_xref="GeneID:944999" CDS 1012001..1013254 /gene="pqiA" /locus_tag="b0950" /gene_synonym="ECK0941; JW0933; pqi5" /function="phenotype; Not classified" /note="paraquat-inducible protein A" /codon_start=1 /transl_table=11 /product="paraquat-inducible, SoxRS-regulated inner membrane protein" /protein_id="NP_415470.1" /db_xref="GI:16128917" /db_xref="ASAP:ABE-0003219" /db_xref="UniProtKB/Swiss-Prot:P0AFL9" /db_xref="EcoGene:EG12965" /db_xref="GeneID:944999" /translation="MCEHHHAAKHILCSQCDMLVALPRLEHGQKAACPRCGTTLTVAW DAPRQRPTAYALAALFMLLLSNLFPFVNMNVAGVTSEITLLEIPGVLFSEDYASLGTF FLLFVQLVPAFCLITILLLVNRAELPVRLKEQLARVLFQLKTWGMAEIFLAGVLVSFV KLMAYGSIGVGSSFLPWCLFCVLQLRAFQCVDRRWLWDDIAPMPELRQPLKPGVTGIR QGLRSCSCCTAILPADEPVCPRCSTKGYVRRRNSLQWTLALLVTSIMLYLPANILPIM VTDLLGSKMPSTILAGVILLWSEGSYPVAAVIFLASIMVPTLKMIAIAWLCWDAKGHG KRDSERMHLIYEVVEFVGRWSMIDVFVIAVLSALVRMGGLMSIYPAMGALMFALVVIM TMFSAMTFDPRLSWDRQPESEHEES" gene 1013259..1014899 /gene="pqiB" /locus_tag="b0951" /gene_synonym="ECK0942; JW0934; pqi5" /db_xref="EcoGene:EG12966" /db_xref="GeneID:945653" CDS 1013259..1014899 /gene="pqiB" /locus_tag="b0951" /gene_synonym="ECK0942; JW0934; pqi5" /function="phenotype; Not classified" /codon_start=1 /transl_table=11 /product="paraquat-inducible, SoxRS-regulated MCE domain protein" /protein_id="NP_415471.1" /db_xref="GI:16128918" /db_xref="ASAP:ABE-0003221" /db_xref="UniProtKB/Swiss-Prot:P43671" /db_xref="EcoGene:EG12966" /db_xref="GeneID:945653" /translation="MESNNGEAKIQKVKNWSPVWIFPIVTALIGAWVLFYHYSHQGPE VTLITANAEGIEGGKTTIKSRSVDVGVVESATLADDLTHVEIKARLNSGMEKLLHKDT VFWVVKPQIGREGISGLGTLLSGVYIELQPGAKGSKMDKYDLLDSPPLAPPDAKGIRV ILDSKKAGQLSPGDPVLFRGYRVGSVETSTFDTQKRNISYQLFINAPYDRLVTNNVRF WKDSGIAVDLTSAGMRVEMGSLTTLLSGGVSFDVPEGLDLGQPVAPKTAFVLYDDQKS IQDSLYTDHIDYLMFFKDSVRGLQPGAPVEFRGIRLGTVSKVPFFAPNMRQTFNDDYR IPVLIRIEPERLKMQLGENADVVEHLGELLKRGLRGSLKTGNLVTGALYVDLDFYPNT PAITGIREFNGYQIIPTVSGGLAQIQQRLMEALDKINKLPLNPMIEQATSTLSESQRT MKNLQTTLDSMNKILASQSMQQLPTDMQSTLRELNRSMQGFQPGSAAYNKMVADMQRL DQVLRELQPVLKTLNEKSNALVFEAKDKKDPEPKRAKQ" gene 1014896..1015459 /gene="pqiC" /locus_tag="b0952" /gene_synonym="ECK0943; JW5127; ymbA" /db_xref="EcoGene:EG13719" /db_xref="GeneID:946972" CDS 1014896..1015459 /gene="pqiC" /locus_tag="b0952" /gene_synonym="ECK0943; JW5127; ymbA" /codon_start=1 /transl_table=11 /product="DUF330 family putative lipoprotein" /protein_id="NP_415472.2" /db_xref="GI:145698237" /db_xref="ASAP:ABE-0003223" /db_xref="UniProtKB/Swiss-Prot:P0AB10" /db_xref="EcoGene:EG13719" /db_xref="GeneID:946972" /translation="MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNR LLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGW VVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDG YDEMVKVLAGVWSQEAASIAQEIKRLP" gene 1015715..1015882 /gene="rmf" /locus_tag="b0953" /gene_synonym="ECK0944; JW0936" /db_xref="EcoGene:EG50004" /db_xref="GeneID:945567" CDS 1015715..1015882 /gene="rmf" /locus_tag="b0953" /gene_synonym="ECK0944; JW0936" /function="factor; Ribosomes - maturation and modification" /experiment="N-terminus verified by Edman degradation: PMID 2181444" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006457 - protein folding" /codon_start=1 /transl_table=11 /product="ribosome modulation factor" /protein_id="NP_415473.1" /db_xref="GI:16128920" /db_xref="ASAP:ABE-0003227" /db_xref="UniProtKB/Swiss-Prot:P0AFW2" /db_xref="EcoGene:EG50004" /db_xref="GeneID:945567" /translation="MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSQWLGGW REAMADRVVMA" gene complement(1015952..1016470) /gene="fabA" /locus_tag="b0954" /gene_synonym="ECK0945; JW0937" /db_xref="EcoGene:EG10273" /db_xref="GeneID:945568" CDS complement(1015952..1016470) /gene="fabA" /locus_tag="b0954" /gene_synonym="ECK0945; JW0937" /EC_number="4.2.1.59" /EC_number="5.3.3.14" /function="enzyme; Fatty acid and phosphatidic acid biosynthesis" /experiment="N-terminus verified by Edman degradation: PMID 2832401" /note="beta-hydroxydecanoyl thioester dehydrase, trans-2-decenoyl-ACP isomerase" /codon_start=1 /transl_table=11 /product="beta-hydroxydecanoyl thioester dehydrase" /protein_id="NP_415474.1" /db_xref="GI:16128921" /db_xref="ASAP:ABE-0003229" /db_xref="UniProtKB/Swiss-Prot:P0A6Q3" /db_xref="EcoGene:EG10273" /db_xref="GeneID:945568" /translation="MVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMT ETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEG KGRALGVGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASD LKVGLFQDTSAF" gene complement(1016539..1018299) /gene="ycbZ" /locus_tag="b0955" /gene_synonym="ECK0946; JW0938" /db_xref="EcoGene:EG13718" /db_xref="GeneID:945569" CDS complement(1016539..1018299) /gene="ycbZ" /locus_tag="b0955" /gene_synonym="ECK0946; JW0938" /function="putative enzyme; Not classified" /GO_process="GO:0006508 - proteolysis" /note="putative ATP-dependent protease" /codon_start=1 /transl_table=11 /product="putative peptidase" /protein_id="NP_415475.1" /db_xref="GI:16128922" /db_xref="ASAP:ABE-0003233" /db_xref="UniProtKB/Swiss-Prot:P75867" /db_xref="EcoGene:EG13718" /db_xref="GeneID:945569" /translation="MTITKLAWRDLVPDTDSYQEIFAQPHLIDENDPLFSDTQPRLQF ALEQLLHTRASSSFMLAKAPEESEYLNLIANAARTLQSDAGQLVGGHYEVSGHSIRLR HAVSADDNFATLTQVVAADWVEAEQLFGCLRQFNGDITLQPGLVHQANGGILIISLRT LLAQPLLWMRLKNIVNRERFDWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQE MEPELSEQAIYSEFEDTLQIVDAESVTQWCRWVTFTARHNHLPAPGADAWPILIREAA RYTGEQETLPLSPQWILRQCKEVASLCDGDTFSGEQLNLMLQQREWREGFLAERMQDE ILQEQILIETEGERIGQINALSVIEFPGHPRAFGEPSRISCVVHIGDGEFTDIERKAE LGGNIHAKGMMIMQAFLMSELQLEQQIPFSASLTFEQSYSEVDGDSASMAELCALISA LADVPVNQSIAITGSVDQFGRAQPVGGLNEKIEGFFAICQQRELTGKQGVIIPTANVR HLSLHSELVKAVEEGKFTIWAVDDVTDALPLLLNLVWDGEGQTTLMQTIQERIAQASQ QEGRHRFPWPLRWLNWFIPN" gene 1018485..1018937 /gene="matP" /locus_tag="b0956" /gene_synonym="ECK0947; JW0939; ycbG" /db_xref="EcoGene:EG12855" /db_xref="GeneID:945570" CDS 1018485..1018937 /gene="matP" /locus_tag="b0956" /gene_synonym="ECK0947; JW0939; ycbG" /function="factor; DNA - replication, repair, restriction/modification" /note="putative dehydrogenase" /codon_start=1 /transl_table=11 /product="Ter macrodomain organizer matS-binding protein" /protein_id="NP_415476.1" /db_xref="GI:16128923" /db_xref="ASAP:ABE-0003238" /db_xref="UniProtKB/Swiss-Prot:P0A8N0" /db_xref="EcoGene:EG12855" /db_xref="GeneID:945570" /translation="MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVL LSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQ RLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKQDLQALLGKE" gene complement(1019013..1020053) /gene="ompA" /locus_tag="b0957" /gene_synonym="con; ECK0948; JW0940; tolG; tut" /db_xref="EcoGene:EG10669" /db_xref="GeneID:945571" CDS complement(1019013..1020053) /gene="ompA" /locus_tag="b0957" /gene_synonym="con; ECK0948; JW0940; tolG; tut" /function="membrane; Outer membrane constituents" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="outer membrane protein 3a (II*;G;d)" /codon_start=1 /transl_table=11 /product="outer membrane protein A (3a;II*;G;d)" /protein_id="NP_415477.1" /db_xref="GI:16128924" /db_xref="ASAP:ABE-0003240" /db_xref="UniProtKB/Swiss-Prot:P0A910" /db_xref="EcoGene:EG10669" /db_xref="GeneID:945571" /translation="MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGF INNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTA KLGYPITDDLDIYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRL EYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKHFTLK SDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSER RAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV KGIKDVVTQPQA" gene complement(1020410..1020919) /gene="sulA" /locus_tag="b0958" /gene_synonym="ECK0949; JW0941; sfiA" /db_xref="EcoGene:EG10984" /db_xref="GeneID:947335" CDS complement(1020410..1020919) /gene="sulA" /locus_tag="b0958" /gene_synonym="ECK0949; JW0941; sfiA" /function="phenotype; Cell division" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006281 - DNA repair; GO:0009432 - SOS response" /note="suppressor of lon; inhibits cell division and ftsZ ring formation" /codon_start=1 /transl_table=11 /product="SOS cell division inhibitor" /protein_id="NP_415478.1" /db_xref="GI:16128925" /db_xref="ASAP:ABE-0003244" /db_xref="UniProtKB/Swiss-Prot:P0AFZ5" /db_xref="EcoGene:EG10984" /db_xref="GeneID:947335" /translation="MYTSGYAHRSSSFSSAASKIARVSTENTTAGLISEVVYREDQPM MTQLLLLPLLQQLGQQSRWQLWLTPQQKLSREWVQASGLPLTKVMQISQLSPCHTVES MVRALRTGNYSVVIGWLADDLTEEEHAELVDAANEGNAMGFIMRPVSASSHATRQLSG LKIHSNLYH" gene 1021138..1021767 /gene="sxy" /locus_tag="b0959" /gene_synonym="ECK0950; JW0942; tfoX; yccR" /db_xref="EcoGene:EG13720" /db_xref="GeneID:946504" CDS 1021138..1021767 /gene="sxy" /locus_tag="b0959" /gene_synonym="ECK0950; JW0942; tfoX; yccR" /codon_start=1 /transl_table=11 /product="CRP-S-dependent promoter expression factor" /protein_id="NP_415479.1" /db_xref="GI:16128926" /db_xref="ASAP:ABE-0003249" /db_xref="UniProtKB/Swiss-Prot:P75869" /db_xref="EcoGene:EG13720" /db_xref="GeneID:946504" /translation="MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVS DGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWRNQLKLVRLSKYS LDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE" gene complement(1021730..1023883) /gene="yccS" /locus_tag="b0960" /gene_synonym="ECK0951; JW5128" /db_xref="EcoGene:EG13721" /db_xref="GeneID:947001" CDS complement(1021730..1023883) /gene="yccS" /locus_tag="b0960" /gene_synonym="ECK0951; JW5128" /codon_start=1 /transl_table=11 /product="putative transporter, FUSC superfamily inner membrane protein" /protein_id="NP_415480.2" /db_xref="GI:90111194" /db_xref="ASAP:ABE-0003251" /db_xref="UniProtKB/Swiss-Prot:P75870" /db_xref="EcoGene:EG13721" /db_xref="GeneID:947001" /translation="MLSPLLKRYTWNSAWLYYARIFIALCGTTAFPWWLGDVKLTIPL TLGMVAAALTDLDDRLAGRLRNLIITLFCFFIASASVELLFPWPWLFAIGLTLSTSGF ILLGGLGQRYATIAFGALLIAIYTMLGTSLYEHWYQQPMYLLAGAVWYNVLTLIGHLL FPVRPLQDNLARCYEQLARYLELKSRMFDPDIEDQSQAPLYDLALANGLLMATLNQTK LSLLTRLRGDRGQRGTRRTLHYYFVAQDIHERASSSHIQYQTLREHFRHSDVLFRFQR LMSMQGQACQQLSRCILLRQPYQHDPHFERAFTHIDAALERMRDNGAPADLLKTLGFL LNNLRAIDAQLATIESEQAQALPHNNDENELADDSPHGLSDIWLRLSRHFTPESALFR HAVRMSLVLCFGYAIIQITGMHHGYWILLTSLFVCQPNYNATRHRLKLRIIGTLVGIA IGIPVLWFVPSLEGQLVLLVITGVLFFAFRNVQYAHATMFITLLVLLCFNLLGEGFEV ALPRVIDTLIGCAIAWAAVSYIWPDWQFRNLPRMLERATEANCRYLDAILEQYHQGRD NRLAYRIARRDAHNRDAELASVVSNMSSEPNVTPQIREAAFRLLCLNHTFTSYISALG AHREQLTNPEILAFLDDAVCYVDDALHHQPADEERVNEALASLKQRMQQLEPRADSKE PLVVQQVGLLIALLPEIGRLQRQITQVPQETPVSA" gene complement(1023902..1024348) /gene="yccF" /locus_tag="b0961" /gene_synonym="ECK0952; JW0944" /db_xref="EcoGene:EG12306" /db_xref="GeneID:945594" CDS complement(1023902..1024348) /gene="yccF" /locus_tag="b0961" /gene_synonym="ECK0952; JW0944" /codon_start=1 /transl_table=11 /product="DUF307 family inner membrane protein" /protein_id="NP_415481.1" /db_xref="GI:16128928" /db_xref="ASAP:ABE-0003253" /db_xref="UniProtKB/Swiss-Prot:P0AB12" /db_xref="EcoGene:EG12306" /db_xref="GeneID:945594" /translation="MRTVLNILNFVLGGFATTLGWLLATLVSIVLIFTLPLTRSCWEI TKLSLVPYGNEAIHVDELNPAGKNVLLNTGGTVLNIFWLIFFGWWLCLMHIATGIAQC ISIIGIPVGIANFKIAAIALWPVGRRVVSVETAQAAREANARRRFE" gene 1024471..1026525 /gene="helD" /locus_tag="b0962" /gene_synonym="ECK0953; JW0945; srjB" /db_xref="EcoGene:EG10426" /db_xref="GeneID:946227" CDS 1024471..1026525 /gene="helD" /locus_tag="b0962" /gene_synonym="ECK0953; JW0945; srjB" /EC_number="3.6.1.-" /function="enzyme; DNA - replication, repair, restriction/modification" /experiment="N-terminus verified by Edman degradation: PMID 2542273" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication" /codon_start=1 /transl_table=11 /product="DNA helicase IV" /protein_id="NP_415482.1" /db_xref="GI:16128929" /db_xref="ASAP:ABE-0003257" /db_xref="UniProtKB/Swiss-Prot:P15038" /db_xref="EcoGene:EG10426" /db_xref="GeneID:946227" /translation="MELKATTLGKRLAQHPYDRAVILNAGIKVSGDRHEYLIPFNQLL AIHCKRGLVWGELEFVLPDEKVVRLHGTEWGETQRFYHHLDAHWRRWSGEMSEIASGV LRQQLDLIATRTGENKWLTREQTSGVQQQIRQALSALPLPVNRLEEFDNCREAWRKCQ AWLKDIESARLQHNQAYTEAMLTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGA GSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRERLHTEDITARTFH ALALHIIQQGSKKVPIVSKLENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQ WSVPEGNFWDDEKLQRRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLM APLLKAWKGALKAENAVDFSGLIHQAIVILEKGRFISPWKHILVDEFQDISPQRAALL AALRKQNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENFGEGERCDLDTTYRFNSRI GEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDESQLDALLDKLSGYAKPEERILIL ARYHHMRPASLEKAATRWPKLQIDFMTIHASKGQQADYVIIVGLQEGSDGFPAAARES IMEEALLPPVEDFPDAEERRLMYVALTRARHRVWALFNKENPSPFVEILKNLDVPVAR KP" gene complement(1026557..1027015) /gene="mgsA" /locus_tag="b0963" /gene_synonym="ECK0954; JW5129; mgs; yccG" /db_xref="EcoGene:EG12307" /db_xref="GeneID:945574" CDS complement(1026557..1027015) /gene="mgsA" /locus_tag="b0963" /gene_synonym="ECK0954; JW5129; mgs; yccG" /EC_number="4.2.3.3" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /experiment="N-terminus verified by Edman degradation: PMID 9489667,9665712" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009438 - methylglyoxal metabolic process" /codon_start=1 /transl_table=11 /product="methylglyoxal synthase" /protein_id="NP_415483.2" /db_xref="GI:90111195" /db_xref="ASAP:ABE-0003259" /db_xref="UniProtKB/Swiss-Prot:P0A731" /db_xref="EcoGene:EG12307" /db_xref="GeneID:945574" /translation="MELTTRTLPARKHIALVAHDHCKQMLMSWVERHQPLLEQHVLYA TGTTGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDV KALLRLATVWNIPVATNVATADFIIQSPHFNDAVDILIPDYQRYLADRLK" gene complement(1027111..1027773) /gene="yccT" /locus_tag="b0964" /gene_synonym="ECK0955; JW0947" /db_xref="EcoGene:EG13722" /db_xref="GeneID:945577" CDS complement(1027111..1027773) /gene="yccT" /locus_tag="b0964" /gene_synonym="ECK0955; JW0947" /codon_start=1 /transl_table=11 /product="UPF0319 family protein" /protein_id="NP_415484.1" /db_xref="GI:16128931" /db_xref="ASAP:ABE-0003262" /db_xref="UniProtKB/Swiss-Prot:P0A8X4" /db_xref="EcoGene:EG13722" /db_xref="GeneID:945577" /translation="MKTGIVTTLIALCLPVSVFATTLRLSTDVDLLVLDGKKVSSSLL RGADSIELDNGPHQLVFRVEKTIHLSNSEERLYISPPLVVSFNTQLINQVNFRLPRLE NEREANHFDAAPRLELLDGDATPIPVKLDILAITSTAKTIDYEVEVERYNKSAKRASL PQFATMMADDSTLLSGVSELDAIPPQSQVLTEQRLKYWFKLADPQTRNTFLQWAEKQP SS" gene 1027946..1028359 /gene="yccU" /locus_tag="b0965" /gene_synonym="ECK0956; JW5130" /db_xref="EcoGene:EG13723" /db_xref="GeneID:949008" CDS 1027946..1028359 /gene="yccU" /locus_tag="b0965" /gene_synonym="ECK0956; JW5130" /experiment="N-terminus verified by Edman degradation: PMID 9868784" /codon_start=1 /transl_table=11 /product="putative CoA-binding protein" /protein_id="NP_415485.4" /db_xref="GI:90111196" /db_xref="ASAP:ABE-0003267" /db_xref="UniProtKB/Swiss-Prot:P75874" /db_xref="EcoGene:EG13723" /db_xref="GeneID:949008" /translation="MKETDIAGILTSTHTIALVGASDKPDRPSYRVMKYLLDQGYHVI PVSPKVAGKTLLGQKGYGTLADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWMQL GVINEQAAVLARDAGLNVVMDRCPAIEIPRLGLAK" repeat_region 1028366..1028389 /note="REP88 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1028404..1028721) /gene="hspQ" /locus_tag="b0966" /gene_synonym="ECK0957; JW5970; yccV" /db_xref="EcoGene:EG13724" /db_xref="GeneID:945578" CDS complement(1028404..1028721) /gene="hspQ" /locus_tag="b0966" /gene_synonym="ECK0957; JW5970; yccV" /experiment="N-terminus verified by Edman degradation: PMID 15569148" /codon_start=1 /transl_table=11 /product="heat shock protein involved in degradation of mutant DnaA; hemimethylated oriC DNA-binding protein" /protein_id="NP_415486.4" /db_xref="GI:145698238" /db_xref="ASAP:ABE-0003269" /db_xref="UniProtKB/Swiss-Prot:P0AB20" /db_xref="EcoGene:EG13724" /db_xref="GeneID:945578" /translation="MIASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVND ELRAAPWYHVVMEDDNGLPVHTYLAEAQLSSELQDEHPEQPSMDELAQTIRKQLQAPR LRN" gene complement(1028779..1029969) /gene="rlmI" /locus_tag="b0967" /gene_synonym="ECK0958; JW5898; yccW" /db_xref="EcoGene:EG13725" /db_xref="GeneID:946691" CDS complement(1028779..1029969) /gene="rlmI" /locus_tag="b0967" /gene_synonym="ECK0958; JW5898; yccW" /function="enzyme; rRNA modification" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="23S rRNA m(5)C1962 methyltransferase, SAM-dependent" /protein_id="NP_415487.4" /db_xref="GI:145698239" /db_xref="ASAP:ABE-0003272" /db_xref="UniProtKB/Swiss-Prot:P75876" /db_xref="EcoGene:EG13725" /db_xref="GeneID:946691" /translation="MSVRLVLAKGREKSLLRRHPWVFSGAVARMEGKASLGETIDIVD HQGKWLARGAYSPASQIRARVWTFDPSESIDIAFFSRRLQQAQKWRDWLAQKDGLDSY RLIAGESDGLPGITIDRFGNFLVLQLLSAGAEYQRAALISALQTLYPECSIYDRSDVA VRKKEGMELTQGPVTGELPPALLPIEEHGMKLLVDIQHGHKTGYYLDQRDSRLATRRY VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV RDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGI LLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEGLYLKGFA CRVM" gene 1030064..1030342 /gene="yccX" /locus_tag="b0968" /gene_synonym="ECK0959; JW5131" /db_xref="EcoGene:EG13726" /db_xref="GeneID:945304" CDS 1030064..1030342 /gene="yccX" /locus_tag="b0968" /gene_synonym="ECK0959; JW5131" /codon_start=1 /transl_table=11 /product="weak acylphosphatase" /protein_id="NP_415488.1" /db_xref="GI:16128935" /db_xref="ASAP:ABE-0003276" /db_xref="UniProtKB/Swiss-Prot:P0AB65" /db_xref="EcoGene:EG13726" /db_xref="GeneID:945304" /translation="MSKVCIIAWVYGRVQGVGFRYTTQYEAKRLGLTGYAKNLDDGSV EVVACGEEGQVEKLMQWLKSGGPRSARVERVLSEPHHPSGELTDFRIR" gene complement(1030339..1030668) /gene="tusE" /locus_tag="b0969" /gene_synonym="ECK0960; JW0952; yccK" /db_xref="EcoGene:EG12876" /db_xref="GeneID:945023" CDS complement(1030339..1030668) /gene="tusE" /locus_tag="b0969" /gene_synonym="ECK0960; JW0952; yccK" /function="orf; Not classified" /note="putative sulfite reductase" /codon_start=1 /transl_table=11 /product="mnm(5)-s(2)U34-tRNA 2-thiolation sulfurtransferase" /protein_id="NP_415489.4" /db_xref="GI:90111197" /db_xref="ASAP:ABE-0003278" /db_xref="UniProtKB/Swiss-Prot:P0AB18" /db_xref="EcoGene:EG12876" /db_xref="GeneID:945023" /translation="MLIFEGKEIETDTEGYLKESSQWSEPLAVVIAENEGISLSPEHW EVVRFVRDFYLEFNTSPAIRMLVKAMANKFGEEKGNSRYLYRLFPKGPAKQATKIAGL PKPVKCI" gene complement(1030759..1031418) /gene="yccA" /locus_tag="b0970" /gene_synonym="ECK0961; JW0953" /db_xref="EcoGene:EG11113" /db_xref="GeneID:946016" CDS complement(1030759..1031418) /gene="yccA" /locus_tag="b0970" /gene_synonym="ECK0961; JW0953" /function="putative transport; Not classified" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /note="putative carrier/transport protein" /codon_start=1 /transl_table=11 /product="Modulator of FtsH protease, inner membrane protein" /protein_id="NP_415490.1" /db_xref="GI:16128937" /db_xref="ASAP:ABE-0003280" /db_xref="UniProtKB/Swiss-Prot:P0AAC6" /db_xref="EcoGene:EG11113" /db_xref="GeneID:946016" /translation="MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTV LMLPSPGLILTLVGMYGLMFLTYKTANKPTGIISAFAFTGFLGYILGPILNTYLSAGM GDVIAMALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPAL HLAISAVFILISSGAILFETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASR D" gene complement(1031625..1031712) /gene="serT" /locus_tag="b0971" /gene_synonym="divE; ECK0962; JWR0026" /db_xref="EcoGene:EG30093" /db_xref="GeneID:944826" tRNA complement(1031625..1031712) /gene="serT" /locus_tag="b0971" /gene_synonym="divE; ECK0962; JWR0026" /product="tRNA-Ser" /note="anticodon: UGA" /db_xref="ASAP:ABE-0003283" /db_xref="EcoGene:EG30093" /db_xref="GeneID:944826" gene 1032139..1033257 /gene="hyaA" /locus_tag="b0972" /gene_synonym="ECK0963; JW0954" /db_xref="EcoGene:EG10468" /db_xref="GeneID:945579" CDS 1032139..1033257 /gene="hyaA" /locus_tag="b0972" /gene_synonym="ECK0963; JW0954" /EC_number="1.12.99.6" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /GO_component="GO:0019866 - organelle inner membrane" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration" /note="hydrogenase-1 small subunit" /codon_start=1 /transl_table=11 /product="hydrogenase 1, small subunit" /protein_id="NP_415491.1" /db_xref="GI:16128938" /db_xref="ASAP:ABE-0003286" /db_xref="UniProtKB/Swiss-Prot:P69739" /db_xref="EcoGene:EG10468" /db_xref="GeneID:945579" /translation="MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAW ALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAE EVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTC ASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVD RMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS STRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGV VAAAVGVHAVASAVDQRRRHNQQPTETEHQPGNEDKQA" gene 1033254..1035047 /gene="hyaB" /locus_tag="b0973" /gene_synonym="ECK0964; JW0955" /db_xref="EcoGene:EG10469" /db_xref="GeneID:945580" CDS 1033254..1035047 /gene="hyaB" /locus_tag="b0973" /gene_synonym="ECK0964; JW0955" /EC_number="1.12.99.6" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /experiment="N-terminus verified by Edman degradation: PMID 2180913" /GO_component="GO:0019866 - organelle inner membrane" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration" /note="hydrogenase-1 large subunit" /codon_start=1 /transl_table=11 /product="hydrogenase 1, large subunit" /protein_id="NP_415492.1" /db_xref="GI:16128939" /db_xref="ASAP:ABE-0003288" /db_xref="UniProtKB/Swiss-Prot:P0ACD8" /db_xref="EcoGene:EG10469" /db_xref="GeneID:945580" /translation="MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVIT NAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDN ANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSP GYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVK IHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMI PDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNV LPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQ ERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLG RILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAP RGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEI LRTLHSFDPCLACSTHVLGDDGSELISVQVR" gene 1035066..1035773 /gene="hyaC" /locus_tag="b0974" /gene_synonym="ECK0965; JW0956" /db_xref="EcoGene:EG10470" /db_xref="GeneID:945581" CDS 1035066..1035773 /gene="hyaC" /locus_tag="b0974" /gene_synonym="ECK0965; JW0956" /function="putative enzyme; Energy metabolism, carbon: Aerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration; GO:0017004 - cytochrome complex assembly" /note="probable Ni/Fe-hydrogenase 1 b-type cytochrome subunit" /codon_start=1 /transl_table=11 /product="hydrogenase 1, b-type cytochrome subunit" /protein_id="NP_415493.1" /db_xref="GI:16128940" /db_xref="ASAP:ABE-0003290" /db_xref="UniProtKB/Swiss-Prot:P0AAM1" /db_xref="EcoGene:EG10470" /db_xref="GeneID:945581" /translation="MQQKSDNVVSHYVFEAPVRIWHWLTVLCMAVLMVTGYFIGKPLP SVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFVGNRYSRELFIVPVWRKSWW QGVWYEIRWYLFLAKRPSADIGHNPIAQAAMFGYFLMSVFMIITGFALYSEHSQYAIF APFRYVVEFFYWTGGNSMDIHSWHRLGMWLIGAFVIGHVYMALREDIMSDDTVISTMV NGYRSHKFGKISNKERS" gene 1035770..1036357 /gene="hyaD" /locus_tag="b0975" /gene_synonym="ECK0966; JW0957" /db_xref="EcoGene:EG10471" /db_xref="GeneID:945575" CDS 1035770..1036357 /gene="hyaD" /locus_tag="b0975" /gene_synonym="ECK0966; JW0957" /function="factor; Energy metabolism, carbon: Aerobic respiration" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration; GO:0006457 - protein folding" /note="processing of HyaA and HyaB proteins" /codon_start=1 /transl_table=11 /product="hydrogenase 1 maturation protease" /protein_id="NP_415494.1" /db_xref="GI:16128941" /db_xref="ASAP:ABE-0003292" /db_xref="UniProtKB/Swiss-Prot:P19930" /db_xref="EcoGene:EG10471" /db_xref="GeneID:945575" /translation="MSEQRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDG GTQGLNLLGYVESASHLLILDAIDYGLEPGTLRTYAGERIPAYLSAKKMSLHQNSFSE VLALADIRGHLPAHIALVGLQPAMLDDYGGSLSELAREQLPAAEQAALAQLAAWGIVP QPANESRCLNYDCLSMENYEGVRLRQYRMTQEEQG" gene 1036354..1036752 /gene="hyaE" /locus_tag="b0976" /gene_synonym="ECK0967; JW0958" /db_xref="EcoGene:EG10472" /db_xref="GeneID:945573" CDS 1036354..1036752 /gene="hyaE" /locus_tag="b0976" /gene_synonym="ECK0967; JW0958" /function="factor; Energy metabolism, carbon: Aerobic respiration" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration; GO:0006457 - protein folding" /note="processing of HyaA and HyaB proteins" /codon_start=1 /transl_table=11 /product="putative HyaA chaperone" /protein_id="NP_415495.1" /db_xref="GI:16128942" /db_xref="ASAP:ABE-0003294" /db_xref="UniProtKB/Swiss-Prot:P19931" /db_xref="EcoGene:EG10472" /db_xref="GeneID:945573" /translation="MSNDTPFDALWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSD PKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGN YRGVLNGIHPWAELINLMRGLVEPQQERAS" gene 1036749..1037606 /gene="hyaF" /locus_tag="b0977" /gene_synonym="ECK0968; JW0959" /db_xref="EcoGene:EG10473" /db_xref="GeneID:945572" CDS 1036749..1037606 /gene="hyaF" /locus_tag="b0977" /gene_synonym="ECK0968; JW0959" /function="phenotype; Energy metabolism, carbon: Aerobic respiration" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration; GO:0006457 - protein folding" /note="nickel incorporation into hydrogenase-1 proteins" /codon_start=1 /transl_table=11 /product="hydrogenase-1 protein nickel incorporation factor" /protein_id="NP_415496.1" /db_xref="GI:16128943" /db_xref="ASAP:ABE-0003296" /db_xref="UniProtKB/Swiss-Prot:P19932" /db_xref="EcoGene:EG10473" /db_xref="GeneID:945572" /translation="MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCA HSPQVIALLNELQHQLSERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQA DDSESEIQEAIFCGLWRVRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPP IDGLMNGLPLAHELLAHVRNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIG YGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVC QWLAEAAPT" gene 1037740..1039284 /gene="cbdA" /locus_tag="b0978" /gene_synonym="appC; cyxA; ECK0969; JW0960" /db_xref="EcoGene:EG11380" /db_xref="GeneID:945585" CDS 1037740..1039284 /gene="cbdA" /locus_tag="b0978" /gene_synonym="appC; cyxA; ECK0969; JW0960" /EC_number="1.10.3.-" /function="putative enzyme; Energy metabolism, carbon: Electron transport" /GO_component="GO:0019866 - organelle inner membrane" /codon_start=1 /transl_table=11 /product="cytochrome bd-II oxidase, subunit I" /protein_id="NP_415497.1" /db_xref="GI:16128944" /db_xref="ASAP:ABE-0003300" /db_xref="UniProtKB/Swiss-Prot:P26459" /db_xref="EcoGene:EG11380" /db_xref="GeneID:945585" /translation="MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTG KTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWSFYSNYVGDIFGAPLAMEALM AFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFD IDTLRMEMTSFSELVFNPVSQVKFVHTVMAGYVTGAMFIMAISAWYLLRGRERNVALR SFAIGSVFGTLAIIGTLQLGDSSAYEVAQVQPVKLAAMEGEWQTEPAPAPFHVVAWPE QDQERNAFALKIPALLGILATHSLDKPVPGLKNLMAETYPRLQRGRMAWLLMQEISQG NREPHVLQAFRGLEGDLGYGMLLSRYAPDMNHVTAAQYQAAMRGAIPQVAPVFWSFRI MVGCGSLLLLVMLIALVQTLRGKIDQHRWVLKMALWSLPLPWIAIEAGWFMTEFGRQP WAIQDILPTYSAHSALTTGQLAFSLIMIVGLYTLFLIAEVYLMQKYARLGPSAMQSEQ PTQQQG" gene 1039296..1040432 /gene="cbdB" /locus_tag="b0979" /gene_synonym="appB; cyxB; ECK0970; JW0961" /db_xref="EcoGene:EG11379" /db_xref="GeneID:947547" CDS 1039296..1040432 /gene="cbdB" /locus_tag="b0979" /gene_synonym="appB; cyxB; ECK0970; JW0961" /EC_number="1.10.3.-" /function="putative enzyme; Energy metabolism, carbon: Electron transport" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="probable third cytochrome oxidase, subunit II" /codon_start=1 /transl_table=11 /product="cytochrome bd-II oxidase, subunit II" /protein_id="NP_415498.1" /db_xref="GI:16128945" /db_xref="ASAP:ABE-0003302" /db_xref="UniProtKB/Swiss-Prot:P26458" /db_xref="EcoGene:EG11379" /db_xref="GeneID:947547" /translation="MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDD ERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPL AFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGS FWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLA GYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPL LTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQL TLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY" gene 1040445..1040537 /gene="cbdX" /locus_tag="b4592" /gene_synonym="appX; ECK4402; yccB" /db_xref="EcoGene:EG11114" /db_xref="GeneID:948955" CDS 1040445..1040537 /gene="cbdX" /locus_tag="b4592" /gene_synonym="appX; ECK4402; yccB" /codon_start=1 /transl_table=11 /product="putative cytochrome bd-II oxidase subunit" /protein_id="YP_001165313.1" /db_xref="GI:145698240" /db_xref="UniProtKB/Swiss-Prot:P24244" /db_xref="EcoGene:EG11114" /db_xref="GeneID:948955" /translation="MWYLLWFVGILLMCSLSTLVLVWLDPRLKS" repeat_region 1040543..1040578 /note="REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 1040617..1041915 /gene="appA" /locus_tag="b0980" /gene_synonym="ECK0971; JW0963" /db_xref="EcoGene:EG10049" /db_xref="GeneID:946206" CDS 1040617..1041915 /gene="appA" /locus_tag="b0980" /gene_synonym="ECK0971; JW0963" /EC_number="3.1.3.2" /EC_number="3.1.3.26" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006793 - phosphorus metabolic process; GO:0042594 - response to starvation" /note="phosphoanhydride phosphorylase; pH 2.5 acid phosphatase; periplasmic" /codon_start=1 /transl_table=11 /product="phosphoanhydride phosphorylase" /protein_id="NP_415500.1" /db_xref="GI:16128946" /db_xref="ASAP:ABE-0003305" /db_xref="UniProtKB/Swiss-Prot:P07102" /db_xref="EcoGene:EG10049" /db_xref="GeneID:946206" /translation="MKAILIPFLSLLIPLTPQSAFAQSEPELKLESVVIVSRHGVRAP TKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQS GQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNA NVTDAILSRAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQDESCSLTQALPS ELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNTLLSLHNAQF YLLQRTPEVARSRATPLLDLIKTALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGG ALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNT PPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIPACSL" repeat_region 1041985..1042018 /note="REP90 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1042030..1044210) /gene="etk" /locus_tag="b0981" /gene_synonym="ECK0972; JW0964; yccC" /db_xref="EcoGene:EG11826" /db_xref="GeneID:947409" CDS complement(1042030..1044210) /gene="etk" /locus_tag="b0981" /gene_synonym="ECK0972; JW0964; yccC" /EC_number="2.7.10.2" /experiment="N-terminus verified by Edman degradation: PMID 10369665" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006464 - protein modification process" /codon_start=1 /transl_table=11 /product="tyrosine-protein kinase, role in O-antigen capsule formation" /protein_id="NP_415501.1" /db_xref="GI:16128947" /db_xref="ASAP:ABE-0003309" /db_xref="UniProtKB/Swiss-Prot:P38134" /db_xref="EcoGene:EG11826" /db_xref="GeneID:947409" /translation="MTTKNMNTPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLI AVAYSLLSTPIYQADTLVQVEQKQGNAILSGLSDMIPNSSPESAPEIQLLQSRMILGK TIAELNLRDIVEQKYFPIVGRGWARLTKEKPGELAISWMHIPQLNGQDQQLTLTVGEN GHYTLEGEEFTVNGMVGQRLEKDGVALTIADIKAKPGTQFVLSQRTELEAINALQETF TVSERSKESGMLELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQL PEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLY KKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNR QQELSISKSSAIGNVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLR RGVEAPEQLEEHGISVYATIPMSEWLDKRTRLRKKNLFSNQQRHRTKNIPFLAVDNPA DSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI DADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSEL LMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVS LSMQRLEQAGVNIKGAILNGVIKRASTAYSYGYNYYGYSYSEKE" gene complement(1044230..1044676) /gene="etp" /locus_tag="b0982" /gene_synonym="ECK0973; JW5132; yccY" /db_xref="EcoGene:EG13727" /db_xref="GeneID:945236" CDS complement(1044230..1044676) /gene="etp" /locus_tag="b0982" /gene_synonym="ECK0973; JW5132; yccY" /function="enzyme; Not classified" /GO_process="GO:0006464 - protein modification process" /note="putative phosphatase" /codon_start=1 /transl_table=11 /product="O-antigen capsule forming protein-tyrosine-phosphatase; Etk-P dephosphorylase" /protein_id="NP_415502.4" /db_xref="GI:90111198" /db_xref="ASAP:ABE-0003312" /db_xref="UniProtKB/Swiss-Prot:P0ACZ2" /db_xref="EcoGene:EG13727" /db_xref="GeneID:945236" /translation="MAQLKFNSILVVCTGNICRSPIGERLLRKRLPGVKVKSAGVHGL VKHPADATAADVAANHGVSLEGHAGRKLTAEMARNYDLILAMESEHIAQVTAIAPEVR GKTMLFGQWLEQKEIPDPYRKSQDAFEHVYGMLERASQEWAKRLSR" gene complement(1044664..1045803) /gene="gfcE" /locus_tag="b0983" /gene_synonym="ECK0974; JW0966; yccZ" /db_xref="EcoGene:EG13728" /db_xref="GeneID:945586" CDS complement(1044664..1045803) /gene="gfcE" /locus_tag="b0983" /gene_synonym="ECK0974; JW0966; yccZ" /function="transport; Not classified" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative function in exopolysaccharide production" /codon_start=1 /transl_table=11 /product="putative O-antigen capsule outer membrane auxillary protein export channel" /protein_id="NP_415503.1" /db_xref="GI:16128949" /db_xref="ASAP:ABE-0003317" /db_xref="UniProtKB/Swiss-Prot:P0A932" /db_xref="EcoGene:EG13728" /db_xref="GeneID:945586" /translation="MKKNIFKFSVLTLAVLSLTACTLVPGQNLSTSNKDVIELPDNQY DLDKMVNIYPVTPGLIDQLRAKPIMSQANPELEQQIANYEYRIGIGDVLMVTVWDHPE LTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGKTLTQVRNEITARLDSVIESPQ VDVSVAAFRSQKAYVTGEVSKSGQQPITNIPLTIMDAINAAGGLTADADWRNVVLTQN GVKTKVNLYALMQRGDLRQNKLLHPGDILFIPRNDDLKVFVMGEVGKQSTLKMDRSGM TLAEALGNAEGMNQDVADATGIFVIRATQNKQNGKIANIYQLNAKDASAMILGTEFQL EPYDIVYVTTAPLARWNRVISLLVPTISGVHDLTETSRWIQTWPN" gene complement(1045849..1047945) /gene="gfcD" /locus_tag="b0984" /gene_synonym="ECK0975; JW0967; ymcA" /db_xref="EcoGene:EG13729" /db_xref="GeneID:945588" CDS complement(1045849..1047945) /gene="gfcD" /locus_tag="b0984" /gene_synonym="ECK0975; JW0967; ymcA" /codon_start=1 /transl_table=11 /product="putative O-antigen capsule production periplasmic protein" /protein_id="NP_415504.1" /db_xref="GI:16128950" /db_xref="ASAP:ABE-0003319" /db_xref="UniProtKB/Swiss-Prot:P75882" /db_xref="EcoGene:EG13729" /db_xref="GeneID:945588" /translation="MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQ MPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGD QSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMA WGYAGNAGNITNPFCRVSDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPL RLKLEYDGNNYQNDFAGKLPQASHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTN FNDLRPALRDTPKPAYQPAPESEGLQYTTVANQLTALKYNAGFDAPEIQLRDKTLYMS GQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAG TAPGQSEPLQQQRVEAEDLSAFGRGYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGL MSSARYWFTDHLLLDGGIFTNIYNNYDKFKSSLLPADSTLPRVRTHIRDYVRNDVYLN NLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDACWALGVDVNYVKQRDWD NMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKRFDSGVAVG VWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRK YQLYPMTAEREVPVGQ" gene complement(1047945..1048691) /gene="gfcC" /locus_tag="b0985" /gene_synonym="ECK0976; JW0968; ymcB" /db_xref="EcoGene:EG13730" /db_xref="GeneID:944978" CDS complement(1047945..1048691) /gene="gfcC" /locus_tag="b0985" /gene_synonym="ECK0976; JW0968; ymcB" /codon_start=1 /transl_table=11 /product="putative O-antigen capsule production periplasmic protein" /protein_id="NP_415505.1" /db_xref="GI:16128951" /db_xref="ASAP:ABE-0003321" /db_xref="UniProtKB/Swiss-Prot:P75883" /db_xref="EcoGene:EG13730" /db_xref="GeneID:944978" /translation="MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPVEN VVQLVTQPQLRDRLWWPGALLTDSAAKAKALKDYQHVMAQLASWEAEADDDVAATIKS VRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAG QLPWQAGRSVTDYLQDHPRLAGADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQL WLGFSAHVLPEKYADLNDQIVSVLTQRVPD" gene complement(1048688..1049332) /gene="gfcB" /locus_tag="b0986" /gene_synonym="ECK0977; JW0969; ymcC" /db_xref="EcoGene:EG13731" /db_xref="GeneID:949118" CDS complement(1048688..1049332) /gene="gfcB" /locus_tag="b0986" /gene_synonym="ECK0977; JW0969; ymcC" /function="putative regulator; Not classified" /note="putative regulator" /codon_start=1 /transl_table=11 /product="O-antigen capsule production lipoprotein" /protein_id="NP_415506.1" /db_xref="GI:16128952" /db_xref="ASAP:ABE-0003323" /db_xref="UniProtKB/Swiss-Prot:P75884" /db_xref="EcoGene:EG13731" /db_xref="GeneID:949118" /translation="MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVADQQI QALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQDNAMLVTHNGRLLKTVKLNNNLL EVTNSGQDPLRNALAIKDGSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGRNV LCNVWQEEVTSTRPEKQWQNTFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP" gene complement(1049439..1049744) /gene="gfcA" /locus_tag="b0987" /gene_synonym="ECK0978; JW5133; ymcD" /db_xref="EcoGene:EG13732" /db_xref="GeneID:945029" CDS complement(1049439..1049744) /gene="gfcA" /locus_tag="b0987" /gene_synonym="ECK0978; JW5133; ymcD" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="O-antigen capsule production threonine-rich inner membrane protein" /protein_id="NP_415507.2" /db_xref="GI:90111199" /db_xref="ASAP:ABE-0003325" /db_xref="UniProtKB/Swiss-Prot:P75885" /db_xref="EcoGene:EG13732" /db_xref="GeneID:945029" /translation="MKHKLSAILMAFMLTTPAAFAAPEATNGTEATTGTTGTTTTTTG ATTTATTTGGVAAGAVGTATVVGVATAVGVATLAVVAANDSGDGGSHNTSTTTSTTR" mobile_element 1049778..1050545 /mobile_element_type="insertion sequence:IS1D" gene 1049833..1050108 /gene="insA" /locus_tag="b4516" /gene_synonym="ECK4531" /note="insA4" /db_xref="EcoGene:EG40001" /db_xref="GeneID:1450250" CDS 1049833..1050108 /gene="insA" /locus_tag="b4516" /gene_synonym="ECK4531" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS1 repressor TnpA" /protein_id="YP_588445.1" /db_xref="GI:94541103" /db_xref="ASAP:ABE-0285037" /db_xref="UniProtKB/Swiss-Prot:P0CF10" /db_xref="EcoGene:EG40001" /db_xref="GeneID:1450250" /translation="MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTIFRHLKNSGRSR" gene 1050027..1050530 /gene="insB1" /locus_tag="b0988" /gene_synonym="ECK0022" /db_xref="EcoGene:EG40002" /db_xref="GeneID:945009" CDS 1050027..1050530 /gene="insB1" /locus_tag="b0988" /gene_synonym="ECK0022" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS1 transposase B" /protein_id="NP_415508.1" /db_xref="GI:16128954" /db_xref="ASAP:ABE-0003338" /db_xref="UniProtKB/Swiss-Prot:P57998" /db_xref="EcoGene:EG40002" /db_xref="GeneID:945009" /translation="MPGNSPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMD EQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDG WPLYESRLKGKLHVISKRYTQRIERYNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY LNIKHYQ" gene complement(1050963..1051175) /gene="cspH" /locus_tag="b0989" /gene_synonym="cspK; ECK0979; JW5134" /db_xref="EcoGene:EG14281" /db_xref="GeneID:945590" CDS complement(1050963..1051175) /gene="cspH" /locus_tag="b0989" /gene_synonym="cspK; ECK0979; JW5134" /function="phenotype; Not classified" /GO_process="GO:0009266 - response to temperature stimulus" /note="cold shock-like protein" /codon_start=1 /transl_table=11 /product="stress protein, member of the CspA-family" /protein_id="NP_415509.1" /db_xref="GI:16128955" /db_xref="ASAP:ABE-0003341" /db_xref="UniProtKB/Swiss-Prot:P0A982" /db_xref="EcoGene:EG14281" /db_xref="GeneID:945590" /translation="MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEV LIPGLRVEFCRVNGLRGPTAANVYLS" gene 1051461..1051673 /gene="cspG" /locus_tag="b0990" /gene_synonym="cspI; ECK0980; JW0974" /db_xref="EcoGene:EG14243" /db_xref="GeneID:945591" CDS 1051461..1051673 /gene="cspG" /locus_tag="b0990" /gene_synonym="cspI; ECK0980; JW0974" /function="phenotype; Not classified" /GO_process="GO:0009266 - response to temperature stimulus" /note="homolog of Salmonella cold shock protein" /codon_start=1 /transl_table=11 /product="cold shock protein homolog, cold-inducible" /protein_id="NP_415510.1" /db_xref="GI:16128956" /db_xref="ASAP:ABE-0003346" /db_xref="UniProtKB/Swiss-Prot:P0A978" /db_xref="EcoGene:EG14243" /db_xref="GeneID:945591" /translation="MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRT LNENQKVEFSIEQGQRGPAAANVVTL" gene 1051847..1052077 /gene="ymcE" /locus_tag="b0991" /gene_synonym="ECK0981; JW0975; sfa" /db_xref="EcoGene:EG13232" /db_xref="GeneID:946951" CDS 1051847..1052077 /gene="ymcE" /locus_tag="b0991" /gene_synonym="ECK0981; JW0975; sfa" /function="phenotype; Not classified" /note="suppresses fabA and ts growth mutation" /codon_start=1 /transl_table=11 /product="cold shock gene" /protein_id="NP_415511.1" /db_xref="GI:16128957" /db_xref="ASAP:ABE-0003349" /db_xref="UniProtKB/Swiss-Prot:P0AAA5" /db_xref="EcoGene:EG13232" /db_xref="GeneID:946951" /translation="MRRWISQNNIRLPRGAFFISALFFFNAVCIVSDNLLIIESFGEM AYNISYLTRVPGTNTLLACCCLLRPEEVNSEY" gene 1052067..1052240 /gene="gnsA" /locus_tag="b4517" /gene_synonym="ECK0982; JW0976; sfa; yccL" /db_xref="EcoGene:EG13233" /db_xref="GeneID:1450249" CDS 1052067..1052240 /gene="gnsA" /locus_tag="b4517" /gene_synonym="ECK0982; JW0976; sfa; yccL" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="putative phosphatidylethanolamine synthesis regulator" /protein_id="YP_588446.1" /db_xref="GI:94541104" /db_xref="ASAP:ABE-0285038" /db_xref="UniProtKB/Swiss-Prot:P0AC92" /db_xref="EcoGene:EG13233" /db_xref="GeneID:1450249" /translation="MNIEELKKQAETEIADFIAQKIAELNKNTGKEVSEIRFTAREKM TGLESYDVKIKIM" gene complement(1052289..1053362) /gene="yccM" /locus_tag="b0992" /gene_synonym="ECK0983; JW0977" /db_xref="EcoGene:EG13234" /db_xref="GeneID:946295" CDS complement(1052289..1053362) /gene="yccM" /locus_tag="b0992" /gene_synonym="ECK0983; JW0977" /codon_start=1 /transl_table=11 /product="putative 4Fe-4S membrane protein" /protein_id="NP_415512.1" /db_xref="GI:16128958" /db_xref="ASAP:ABE-0003351" /db_xref="UniProtKB/Swiss-Prot:P52636" /db_xref="EcoGene:EG13234" /db_xref="GeneID:946295" /translation="MAENKRTRWQRRPGTTGGKLPWNDWRNATTWRKATQLLLLAMNI YIAITFWYWVRYYETASSTTFVARPGGIEGWLPIAGLMNLKYSLVTGQLPSVHAAAML LLVAFIVISLLLKKAFCSWLCPVGTLSELIGDLGNKLFGRQCVLPRWLDIPLRGVKYL LLSFFIYIALLMPAQAIHYFMLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFI RHAWCRYLCPYGALMGVVSLLSPFKIRRNAESCIDCGKCAKNCPSRIPVDKLIQVRTV ECTGCMTCVESCPVASTLTFSLQKPAANKKAFALSGWLMTLLVLGIMFAVIGYAMYAG VWQSPVPEELYRRLIPQAPMIGH" gene complement(1053434..1056178) /gene="torS" /locus_tag="b0993" /gene_synonym="ECK0984; JW5135; yccI" /db_xref="EcoGene:EG12617" /db_xref="GeneID:945595" CDS complement(1053434..1056178) /gene="torS" /locus_tag="b0993" /gene_synonym="ECK0984; JW5135; yccI" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration; GO:0006464 - protein modification process" /codon_start=1 /transl_table=11 /product="hybrid sensory histidine kinase in two-component regulatory system with TorR" /protein_id="NP_415513.2" /db_xref="GI:90111200" /db_xref="ASAP:ABE-0003354" /db_xref="UniProtKB/Swiss-Prot:P39453" /db_xref="EcoGene:EG12617" /db_xref="GeneID:945595" /translation="MNLTLTRRLWMGFALMALLTLTSTLVGWYNLRFISQVEKDNTQA LIPTMNMARQLSEASAWELFAAQNLTSADNEKMWQAQGRMLTAQSLKINALLQALREQ GFDTTAIEQQEQEISRSLRQQGELVGQRLQLRQQQQQLSQQIVAAADEIARLAQGQAN NATTSAGATQAGIYDLIEQDQRQAAESALDRLIDIDLEYVNQMNELRLSALRVQQMVM NLGLEQIQKNAPTLEKQLNNAVKILQRRQIRIEDPGVRAQVATTLTTVSQYSDLLALY QQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDTIELRNQHGLAHLEKASARGQYSLL LLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIG RLMDAFRSNVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA MSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAG GKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDMPCALMGDPRRIRQVI TNLLSNALRFTDEGYIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKRG GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGL RLLLIEDNPLTQRITIEMLKTSGAQIVAVGNAAQALETLQNSEPFAAALVDFDLPDID GITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYL QLQVNNDQSLDVSQLNEDAQLMGTEKIHEWLVLFTQHALPLLDEIDIARASQDSEKIK RAAHQLKSSCSSLGMHIASQLCAQLEQQPLSAPLPHEEITRSVAALEAWLHKKDLNAI " gene 1056261..1057289 /gene="torT" /locus_tag="b0994" /gene_synonym="ECK0985; JW0979; yccH" /db_xref="EcoGene:EG12616" /db_xref="GeneID:946289" CDS 1056261..1057289 /gene="torT" /locus_tag="b0994" /gene_synonym="ECK0985; JW0979; yccH" /function="regulator; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0009061 - anaerobic respiration; GO:0006464 - protein modification process" /note="part of regulation of tor operon, periplasmic" /codon_start=1 /transl_table=11 /product="periplasmic sensory protein associated with the TorRS two-component regulatory system" /protein_id="NP_415514.1" /db_xref="GI:16128960" /db_xref="ASAP:ABE-0003360" /db_xref="UniProtKB/Swiss-Prot:P38683" /db_xref="EcoGene:EG12616" /db_xref="GeneID:946289" /translation="MRVLLFLLLSLFMLPAFSADNLLRWHDAQHFTVQASTPLKAKRA WKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWG AEAILLGSSTTSFPDLQKQVASLPVIELVNAIDAPQVKSRVGVPWFQMGYQPGRYLVQ WAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQE MLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASD QMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFY QHTSAAKK" gene complement(1057262..1057954) /gene="torR" /locus_tag="b0995" /gene_synonym="ECK0986; JW0980" /db_xref="EcoGene:EG12615" /db_xref="GeneID:946182" CDS complement(1057262..1057954) /gene="torR" /locus_tag="b0995" /gene_synonym="ECK0986; JW0980" /function="regulator; Energy metabolism, carbon: Anaerobic respiration" /experiment="N-terminus verified by Edman degradation: PMID 8083154" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0009061 - anaerobic respiration; GO:0006350 - transcription" /note="response transcriptional regulator for torA (sensor TorS)" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with TorS" /protein_id="NP_415515.1" /db_xref="GI:16128961" /db_xref="ASAP:ABE-0003362" /db_xref="UniProtKB/Swiss-Prot:P38684" /db_xref="EcoGene:EG12615" /db_xref="GeneID:946182" /translation="MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN QSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTK PLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTR AEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQ HGEGYFLAADVC" gene 1058084..1059256 /gene="torC" /locus_tag="b0996" /gene_synonym="ECK0987; JW0981" /db_xref="EcoGene:EG11815" /db_xref="GeneID:946252" CDS 1058084..1059256 /gene="torC" /locus_tag="b0996" /gene_synonym="ECK0987; JW0981" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0042597 - periplasmic space" /GO_function="GO:0009055 - electron carrier activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0009061 - anaerobic respiration; GO:0017004 - cytochrome complex assembly; GO:0006350 - transcription" /note="trimethylamine N-oxide reductase, cytochrome c-type subunit" /codon_start=1 /transl_table=11 /product="trimethylamine N-oxide (TMAO) reductase I, cytochrome c-type subunit" /protein_id="NP_415516.1" /db_xref="GI:16128962" /db_xref="ASAP:ABE-0003370" /db_xref="UniProtKB/Swiss-Prot:P33226" /db_xref="EcoGene:EG11815" /db_xref="GeneID:946252" /translation="MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTST TEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQ TFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQM KVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAK GDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGD VQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHG APEIAHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK" gene 1059256..1061802 /gene="torA" /locus_tag="b0997" /gene_synonym="ECK0988; JW0982" /db_xref="EcoGene:EG11814" /db_xref="GeneID:946267" CDS 1059256..1061802 /gene="torA" /locus_tag="b0997" /gene_synonym="ECK0988; JW0982" /EC_number="1.6.6.9" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0009061 - anaerobic respiration" /note="trimethylamine N-oxide reductase subunit" /codon_start=1 /transl_table=11 /product="trimethylamine N-oxide (TMAO) reductase I, catalytic subunit" /protein_id="NP_415517.1" /db_xref="GI:16128963" /db_xref="ASAP:ABE-0003372" /db_xref="UniProtKB/Swiss-Prot:P33225" /db_xref="EcoGene:EG11814" /db_xref="GeneID:946267" /translation="MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAAT DAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRY PMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGW QSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLV LQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTH EYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEK DGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLA AMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIP IARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGLRKLETVI AIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDI FRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFD HPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGG PGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDV VRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIG TSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS" gene 1061799..1062398 /gene="torD" /locus_tag="b0998" /gene_synonym="ECK0989; JW0983" /db_xref="EcoGene:EG12195" /db_xref="GeneID:945625" CDS 1061799..1062398 /gene="torD" /locus_tag="b0998" /gene_synonym="ECK0989; JW0983" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006457 - protein folding" /note="part of trimethylamine-N-oxide oxidoreductase" /codon_start=1 /transl_table=11 /product="TorA-maturation chaperone" /protein_id="NP_415518.1" /db_xref="GI:16128964" /db_xref="ASAP:ABE-0003374" /db_xref="UniProtKB/Swiss-Prot:P36662" /db_xref="EcoGene:EG12195" /db_xref="GeneID:945625" /translation="MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLL KSEPPLTAAVNELENRIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQ EIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTA LWQWLPEFVARCRQYDSFGFYAALSQLLLVLVECDHQNR" repeat_region 1062407..1062540 /note="REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences" gene complement(1062550..1062855) /gene="cbpM" /locus_tag="b0999" /gene_synonym="ECK0990; JW0984; yccD" /db_xref="EcoGene:EG12194" /db_xref="GeneID:945597" CDS complement(1062550..1062855) /gene="cbpM" /locus_tag="b0999" /gene_synonym="ECK0990; JW0984; yccD" /codon_start=1 /transl_table=11 /product="modulator of CbpA co-chaperone" /protein_id="NP_415519.1" /db_xref="GI:16128965" /db_xref="ASAP:ABE-0003377" /db_xref="UniProtKB/Swiss-Prot:P63264" /db_xref="EcoGene:EG12194" /db_xref="GeneID:945597" /translation="MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWV FDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP" gene complement(1062855..1063775) /gene="cbpA" /locus_tag="b1000" /gene_synonym="ECK0991; JW0985" /db_xref="EcoGene:EG12193" /db_xref="GeneID:947572" CDS complement(1062855..1063775) /gene="cbpA" /locus_tag="b1000" /gene_synonym="ECK0991; JW0985" /function="factor; Chaperones" /experiment="N-terminus verified by Edman degradation: PMID 8302830" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006457 - protein folding" /note="curved DNA-binding protein; functions closely related to DnaJ" /codon_start=1 /transl_table=11 /product="DnaK co-chaperone; curved DNA-binding protein" /protein_id="NP_415520.1" /db_xref="GI:16128966" /db_xref="ASAP:ABE-0003379" /db_xref="UniProtKB/Swiss-Prot:P36659" /db_xref="EcoGene:EG12193" /db_xref="GeneID:947572" /translation="MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEA RFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIF GQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTL NVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVS PWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMP PKPDENTAALWQQLADAQSSFDPRKDWGKA" gene 1064036..1065292 /gene="yccE" /locus_tag="b1001" /gene_synonym="ECK0992; JW0986" /db_xref="EcoGene:EG12196" /db_xref="GeneID:947468" CDS 1064036..1065292 /gene="yccE" /locus_tag="b1001" /gene_synonym="ECK0992; JW0986" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_415521.1" /db_xref="GI:16128967" /db_xref="ASAP:ABE-0003384" /db_xref="UniProtKB/Swiss-Prot:P36661" /db_xref="EcoGene:EG12196" /db_xref="GeneID:947468" /translation="MGSNIHGISCTANNYLKQAWNDIKNEYEKNQTYSITLFENTLVC FMRLYNELRRKVNEEDTPCLECESLEKEFEEMQNDNDLSLFMRILRTNDTQIYSGVSG GITYTIQYVRDIDIVRVSLPGRASESITDFKGYYWYNFMEYIENINACDDVFSEYCFD DENISVQPERINTPGISDLDSDIDLSGISFIQRETNQALGLKYAPVDGDGYCLLRAIL VLKQHDYSWALVSYKMQKEVYNEFIKMVDKKTIEALVDTAFYNLREDVKTLFGVDLQS DNQIQGQSSLMSWSFLFFKKQFIDSCLNNEKCILHLPEFIFNDNKNLLALDTDTSDRI KAVKNFLVVLSDSICSLFIVNSNVASISLGNESFSTDEDLEYGYLMNTGNHYDVYLPP ELFAQAYKLNNKEMNAQLDYLNRYAI" gene 1065585..1066826 /gene="agp" /locus_tag="b1002" /gene_synonym="ECK0993; JW0987" /db_xref="EcoGene:EG10033" /db_xref="GeneID:945773" CDS 1065585..1066826 /gene="agp" /locus_tag="b1002" /gene_synonym="ECK0993; JW0987" /EC_number="3.1.3.10" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006006 - glucose metabolic process" /note="periplasmic glucose-1-phosphatase" /codon_start=1 /transl_table=11 /product="glucose-1-phosphatase/inositol phosphatase" /protein_id="NP_415522.1" /db_xref="GI:16128968" /db_xref="ASAP:ABE-0003388" /db_xref="UniProtKB/Swiss-Prot:P19926" /db_xref="EcoGene:EG10033" /db_xref="GeneID:945773" /translation="MNKTLIAAAVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRA PLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECP PPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAF SEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQE PGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTS PEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNE RTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCP IDADGFCPMDKFDSVLNEAVK" gene complement(1066864..1067091) /gene="yccJ" /locus_tag="b1003" /gene_synonym="ECK0994; JW0988" /db_xref="EcoGene:EG12703" /db_xref="GeneID:948930" CDS complement(1066864..1067091) /gene="yccJ" /locus_tag="b1003" /gene_synonym="ECK0994; JW0988" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_415523.1" /db_xref="GI:16128969" /db_xref="ASAP:ABE-0003390" /db_xref="UniProtKB/Swiss-Prot:P0AB14" /db_xref="EcoGene:EG12703" /db_xref="GeneID:948930" /translation="MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWE EGSDEVLVKAFAKTDKDSLFWGEQTIERKNV" gene complement(1067112..1067708) /gene="wrbA" /locus_tag="b1004" /gene_synonym="ECK0995; JW0989" /db_xref="EcoGene:EG11540" /db_xref="GeneID:947263" CDS complement(1067112..1067708) /gene="wrbA" /locus_tag="b1004" /gene_synonym="ECK0995; JW0989" /function="enzyme; Not classified" /GO_component="GO:0005737 - cytoplasm" /note="flavoprotein WrbA (Trp repressor binding protein)" /codon_start=1 /transl_table=11 /product="NAD(P)H:quinone oxidoreductase" /protein_id="NP_415524.1" /db_xref="GI:16128970" /db_xref="ASAP:ABE-0003392" /db_xref="UniProtKB/Swiss-Prot:P0A8G6" /db_xref="EcoGene:EG11540" /db_xref="GeneID:947263" /translation="MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMP PQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGA LYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPY GATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG" gene 1068081..1068254 /gene="ymdF" /locus_tag="b4518" /gene_synonym="ECK0996; JW5136" /db_xref="EcoGene:EG14358" /db_xref="GeneID:945598" CDS 1068081..1068254 /gene="ymdF" /locus_tag="b4518" /gene_synonym="ECK0996; JW5136" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="KGG family protein" /protein_id="NP_415525.2" /db_xref="GI:94541090" /db_xref="ASAP:ABE-0285039" /db_xref="UniProtKB/Swiss-Prot:P56614" /db_xref="EcoGene:EG14358" /db_xref="GeneID:945598" /translation="MANHRGGSGNFAEDRERASEAGKKGGQHSGGNFKNDPQRASEAG KKGGKSSHGKSDN" repeat_region 1068354..1068451 /note="RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(1068511..1069839) /gene="rutG" /locus_tag="b1006" /gene_synonym="ECK0997; JW5137; ycdG" /db_xref="EcoGene:EG13853" /db_xref="GeneID:946589" CDS complement(1068511..1069839) /gene="rutG" /locus_tag="b1006" /gene_synonym="ECK0997; JW5137; ycdG" /function="transport; Pyrimidine nitrogen catabolism" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="pyrimidine permease" /protein_id="NP_415526.4" /db_xref="GI:90111201" /db_xref="ASAP:ABE-0003401" /db_xref="UniProtKB/Swiss-Prot:P75892" /db_xref="EcoGene:EG13853" /db_xref="GeneID:946589" /translation="MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMF GATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNG QGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAP IAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLG LGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGR NMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAML LGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTL VLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRKLVDVPPPEVVHQEP" gene complement(1069860..1070354) /gene="rutF" /locus_tag="b1007" /gene_synonym="ECK0998; JW5138; ycdH" /db_xref="EcoGene:EG13854" /db_xref="GeneID:946594" CDS complement(1069860..1070354) /gene="rutF" /locus_tag="b1007" /gene_synonym="ECK0998; JW5138; ycdH" /function="enzyme; Pyrimidine nitrogen catabolism" /codon_start=1 /transl_table=11 /product="flavin:NADH reductase" /protein_id="NP_415527.4" /db_xref="GI:90111202" /db_xref="ASAP:ABE-0003403" /db_xref="UniProtKB/Swiss-Prot:P75893" /db_xref="EcoGene:EG13854" /db_xref="GeneID:946594" /translation="MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTD TPPTLLVCLNRGASVWPAFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQT GVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHTTPYGLVWFDRSYHALM RPAC" gene complement(1070365..1070955) /gene="rutE" /locus_tag="b1008" /gene_synonym="ECK0999; JW0993; ycdI" /db_xref="EcoGene:EG13855" /db_xref="GeneID:946591" CDS complement(1070365..1070955) /gene="rutE" /locus_tag="b1008" /gene_synonym="ECK0999; JW0993; ycdI" /function="enzyme; Pyrimidine nitrogen catabolism" /codon_start=1 /transl_table=11 /product="putative malonic semialdehyde reductase" /protein_id="NP_415528.1" /db_xref="GI:16128974" /db_xref="ASAP:ABE-0003407" /db_xref="UniProtKB/Swiss-Prot:P75894" /db_xref="EcoGene:EG13855" /db_xref="GeneID:946591" /translation="MNEAVSPGALSTLFTDARTHNGWRETPVSDETLREIYALMKWGP TSANCSPARIVFTRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFP HGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQHVDDAFFT GSTLKSNLLINIGYGDSSKLYARLPRLSFEEACGLL" gene complement(1070965..1071765) /gene="rutD" /locus_tag="b1009" /gene_synonym="ECK1000; JW0994; ycdJ" /db_xref="EcoGene:EG13856" /db_xref="GeneID:946586" CDS complement(1070965..1071765) /gene="rutD" /locus_tag="b1009" /gene_synonym="ECK1000; JW0994; ycdJ" /function="enzyme; Pyrimidine nitrogen catabolism" /codon_start=1 /transl_table=11 /product="putative reactive intermediate detoxifying aminoacrylate hydrolase" /protein_id="NP_415529.1" /db_xref="GI:16128975" /db_xref="ASAP:ABE-0003410" /db_xref="UniProtKB/Swiss-Prot:P75895" /db_xref="EcoGene:EG13856" /db_xref="GeneID:946586" /translation="MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVC YDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYP ASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPR LEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSS ELHAALPDSQKMVMPYGGHACNVTDPETFNALLLNGLASLLHHREAAL" gene complement(1071773..1072159) /gene="rutC" /locus_tag="b1010" /gene_synonym="ECK1001; JW0995; ycdK" /db_xref="EcoGene:EG13857" /db_xref="GeneID:945599" CDS complement(1071773..1072159) /gene="rutC" /locus_tag="b1010" /gene_synonym="ECK1001; JW0995; ycdK" /function="enzyme; Pyrimidine nitrogen catabolism" /codon_start=1 /transl_table=11 /product="putative aminoacrylate deaminase, reactive intermediate detoxification; weak enamine/imine deaminase activity" /protein_id="NP_415530.1" /db_xref="GI:16128976" /db_xref="ASAP:ABE-0003412" /db_xref="UniProtKB/Swiss-Prot:P0AFQ5" /db_xref="EcoGene:EG13857" /db_xref="GeneID:945599" /translation="MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLF ADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKP ARFCIQCGLVKPDALVEIATIAHIAK" gene complement(1072171..1072863) /gene="rutB" /locus_tag="b1011" /gene_synonym="ECK1002; JW5139; ycdL" /db_xref="EcoGene:EG13858" /db_xref="GeneID:945699" CDS complement(1072171..1072863) /gene="rutB" /locus_tag="b1011" /gene_synonym="ECK1002; JW5139; ycdL" /function="enzyme; Pyrimidine nitrogen catabolism" /codon_start=1 /transl_table=11 /product="ureidoacrylate amidohydrolase" /protein_id="NP_415531.2" /db_xref="GI:90111203" /db_xref="ASAP:ABE-0003414" /db_xref="UniProtKB/Swiss-Prot:P75897" /db_xref="EcoGene:EG13858" /db_xref="GeneID:945699" /translation="MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVS TTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQP QLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTG IATNVCVESTLRDGFFLEYFGVVLEDATHQAGPKFAQKAALFNIETFFGWVSDVETFC DALSPTSFAHIA" gene complement(1072863..1074011) /gene="rutA" /locus_tag="b1012" /gene_synonym="ECK1003; JW0997; ycdM" /db_xref="EcoGene:EG13859" /db_xref="GeneID:945643" CDS complement(1072863..1074011) /gene="rutA" /locus_tag="b1012" /gene_synonym="ECK1003; JW0997; ycdM" /function="enzyme; Pyrimidine nitrogen catabolism" /codon_start=1 /transl_table=11 /product="pyrimidine oxygenase, FMN-dependent" /protein_id="NP_415532.3" /db_xref="GI:49176071" /db_xref="ASAP:ABE-0003416" /db_xref="UniProtKB/Swiss-Prot:P75898" /db_xref="EcoGene:EG13859" /db_xref="GeneID:945643" /translation="MQDAAPRLTFTLRDEERLMMKIGVFVPIGNNGWLISTHAPQYMP TFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQI YATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRY DYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSAR YADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWE HYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARML DEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA" gene 1074242..1074880 /gene="rutR" /locus_tag="b1013" /gene_synonym="ECK1004; JW0998; ycdC" /db_xref="EcoGene:EG12301" /db_xref="GeneID:945075" CDS 1074242..1074880 /gene="rutR" /locus_tag="b1013" /gene_synonym="ECK1004; JW0998; ycdC" /function="regulator; Pyrimidine nitrogen catabolism" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="hypothetical transcriptional regulator" /codon_start=1 /transl_table=11 /product="rut operon transcriptional repressor for" /protein_id="NP_415533.1" /db_xref="GI:16128979" /db_xref="ASAP:ABE-0003422" /db_xref="UniProtKB/Swiss-Prot:P0ACU2" /db_xref="EcoGene:EG12301" /db_xref="GeneID:945075" /translation="MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQI AELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKL EVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQ HLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR" repeat_region 1074885..1074912 /note="REP93 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1074920..1078882) /gene="putA" /locus_tag="b1014" /gene_synonym="ECK1005; JW0999; poaA; putC" /db_xref="EcoGene:EG10801" /db_xref="GeneID:945600" CDS complement(1074920..1078882) /gene="putA" /locus_tag="b1014" /gene_synonym="ECK1005; JW0999; poaA; putC" /EC_number="1.2.1.88" /EC_number="1.5.5.2" /function="enzyme; Degradation of small molecules: Amino acids" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0009063 - cellular amino acid catabolic process; GO:0006350 - transcription" /note="proline dehydrogenase, P5C dehydrogenase" /codon_start=1 /transl_table=11 /product="fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase" /protein_id="NP_415534.1" /db_xref="GI:16128980" /db_xref="ASAP:ABE-0003424" /db_xref="UniProtKB/Swiss-Prot:P09546" /db_xref="EcoGene:EG10801" /db_xref="GeneID:945600" /translation="MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQL ENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRP ETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQ EGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGK LVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLE EKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALH PRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEESDRLEISLDLLEKLCFEPE LAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGL EGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQY EFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSF VNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDL ANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGYVREATPR EVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAI AEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNS VLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDDRVRGVMFTGS TEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAG QRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHI QTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYN RNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPF GGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAKYPVDAQLKAALTQPLNAL REWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDAL TQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDS DQLRALCEAVAARDGTIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG " gene 1079305..1080813 /gene="putP" /locus_tag="b1015" /gene_synonym="ECK1006; JW1001; putC" /db_xref="EcoGene:EG10802" /db_xref="GeneID:945602" CDS 1079305..1080813 /gene="putP" /locus_tag="b1015" /gene_synonym="ECK1006; JW1001; putC" /function="transport; Transport of small molecules: Cations" /experiment="N-terminus verified by Edman degradation: PMID 1567896" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0005298 - proline:sodium symporter activity" /GO_process="GO:0006561 - proline biosynthetic process" /note="major sodium/proline symporter" /codon_start=1 /transl_table=11 /product="proline:sodium symporter" /protein_id="NP_415535.1" /db_xref="GI:16128981" /db_xref="ASAP:ABE-0003433" /db_xref="UniProtKB/Swiss-Prot:P07117" /db_xref="EcoGene:EG10802" /db_xref="GeneID:945602" /translation="MAISTPMLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGP FVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTE YNNNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSY ETALWAGAAATILYTFIGGFLAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEV IKQKSIENVDMLKGLNFVAIISLMGWGLGYFGQPHILARFMAADSHHSIVHARRISMT WMILCLAGAVAVGFFGIAYFNDHPALAGAVNQNAERVFIELAQILFNPWIAGILLSAI LAAVMSTLSCQLLVCSSAITEDLYKAFLRKHASQKELVWVGRVMVLVVALVAIALAAN PENRVLGLVSYAWAGFGAAFGPVVLFSVMWSRMTRNGALAGMIIGALTVIVWKQFGWL GLYEIIPGFIFGSIGIVVFSLLGKAPSAAMQKRFAEADAHYHSAPPSRLQES" repeat_region 1081112..1081145 /note="REP94 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 1081356..1082185 /gene="efeU" /locus_tag="b4490" /gene_synonym="ECK1007; JW1002; JW5141; ycdN" /pseudo /db_xref="EcoGene:EG13860" /db_xref="GeneID:948956" CDS join(1081356..1081460,1081460..1082185) /gene="efeU" /locus_tag="b4490" /gene_synonym="ECK1007; JW1002; JW5141; ycdN" /note="ferrous iron permease (pseudogene)" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0003441" /db_xref="ASAP:ABE-0003443" /db_xref="ASAP:ABE-0285091" /db_xref="UniProtKB/Swiss-Prot:P75901" /db_xref="EcoGene:EG13860" /db_xref="GeneID:948956" gene 1082243..1083370 /gene="efeO" /locus_tag="b1018" /gene_synonym="ECK1008; JW1003; ycdO" /db_xref="EcoGene:EG13861" /db_xref="GeneID:945603" CDS 1082243..1083370 /gene="efeO" /locus_tag="b1018" /gene_synonym="ECK1008; JW1003; ycdO" /codon_start=1 /transl_table=11 /product="inactive ferrous ion transporter EfeUOB" /protein_id="NP_415537.1" /db_xref="GI:16128982" /db_xref="ASAP:ABE-0003448" /db_xref="UniProtKB/Swiss-Prot:P0AB24" /db_xref="EcoGene:EG13861" /db_xref="GeneID:945603" /translation="MTINFRRNALQLSVAALFSSAFMANAADVPQVKVTVTDKQCEPM TITVNAGKTQFIIQNHSQKALEWEILKGVMVVEERENIAPGFSQKMTANLQPGEYDMT CGLLTNPKGKLIVKGEATADAAQSDALLSLGGAITAYKAYVMAETTQLVTDTKAFTDA IKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHR LEKALFGDNTTKGMDQYAEQLYTDVVDLQKRISELAFPPSKVVGGAAGLIEEVAASKI SGEEDRYSHTDLWDFQANVEGSQKIVDLLRPQLQKANPELLAKVDANFKKVDTILAKY RTKDGFETYDKLTDADRNALKGPITALAEDLAQLRGVLGLD" gene 1083376..1084647 /gene="efeB" /locus_tag="b1019" /gene_synonym="ECK1009; JW1004; ycdB" /db_xref="EcoGene:EG11735" /db_xref="GeneID:946500" CDS 1083376..1084647 /gene="efeB" /locus_tag="b1019" /gene_synonym="ECK1009; JW1004; ycdB" /codon_start=1 /transl_table=11 /product="deferrrochelatase, periplasmic" /protein_id="NP_415538.1" /db_xref="GI:16128983" /db_xref="ASAP:ABE-0003451" /db_xref="UniProtKB/Swiss-Prot:P31545" /db_xref="EcoGene:EG11735" /db_xref="GeneID:946500" /translation="MQYKDENGVNEPSRRRLLKVIGALALAGSCPVAHAQKTQSAPGT LSPDARNEKQPFYGEHQAGILTPQQAAMMLVAFDVLASDKADLERLFRLLTQRFAFLT QGGAAPETPNPRLPPLDSGILGGYIAPDNLTITLSVGHSLFDERFGLAPQMPKKLQKM TRFPNDSLDAALCHGDVLLQICANTQDTVIHALRDIIKHTPDLLSVRWKREGFISDHA ARSKGKETPINLLGFKDGTANPDSQNDKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQ FRVEFWDRTPLKEQQTIFGRDKQTGAPLGMQHEHDVPDYASDPEGKVIALDSHIRLAN PRTAESESSLMLRRGYSYSLGVTNSGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALE EYVKPIGGGYFFALPGVKDANDYFGSALLRV" repeat_region 1084682..1084767 /note="REP95 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene 1084992..1086056 /gene="phoH" /locus_tag="b1020" /gene_synonym="ECK1010; JW1005; psiH" /db_xref="EcoGene:EG11734" /db_xref="GeneID:948010" CDS 1084992..1086056 /gene="phoH" /locus_tag="b1020" /gene_synonym="ECK1010; JW1005; psiH" /function="regulator; Central intermediary metabolism: Phosphorus compounds" /experiment="N-terminus verified by Edman degradation: PMID 8444794" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006793 - phosphorus metabolic process; GO:0042594 - response to starvation" /note="PhoB-dependent, ATP-binding pho regulon component; may be helicase; induced by P starvation" /codon_start=1 /transl_table=11 /product="ATP-binding protein; putative PhoH family P-loop ATPase" /protein_id="NP_415539.1" /db_xref="GI:16128984" /db_xref="ASAP:ABE-0003458" /db_xref="UniProtKB/Swiss-Prot:P0A9K1" /db_xref="EcoGene:EG11734" /db_xref="GeneID:948010" /translation="MVTSCTGHVLDNQRATTRGVFSSGSHLVTLHFQPHPFFSCVTDA VNGARSRFSAFYPKANYGLQGSQPSDVRAHNRAANGACDEYKQLKVLSMGRQKAVIKA RREAKRVLRRDSRSHKQREEESVTSLVQMGGVEAIGMARDSRDTSPILARNEAQLHYL KAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD IAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDE AQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLPRGVCSGLSDALERFEEDEMVGIVR FGKEDCVRSALCQRTLHAYS" gene complement(1086106..1086519) /gene="pgaD" /locus_tag="b1021" /gene_synonym="ECK1011; hmsS; JW1006; ycdP" /db_xref="EcoGene:EG13862" /db_xref="GeneID:947503" CDS complement(1086106..1086519) /gene="pgaD" /locus_tag="b1021" /gene_synonym="ECK1011; hmsS; JW1006; ycdP" /function="enzyme; Surface polysaccharides and antigens" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="biofilm PGA synthase PgaCD, regulatory subunit; c-di-GMP-stimulated activity and dimerization" /protein_id="NP_415540.1" /db_xref="GI:16128985" /db_xref="ASAP:ABE-0003460" /db_xref="UniProtKB/Swiss-Prot:P69432" /db_xref="EcoGene:EG13862" /db_xref="GeneID:947503" /translation="MNNLIITTRQSPVRLLVDYVATTILWTLFALFIFLFAMDLLTGY YWQSEARSRLQFYFLLAVANAVVLIVWALYNKLRFQKQQHHAAYQYTPQEYAESLAIP DELYQQLQKSHRMSVHFTSQGQIKMVVSEKALVRA" gene complement(1086521..1087846) /gene="pgaC" /locus_tag="b1022" /gene_synonym="ECK1012; hmsR; JW1007; ycdQ" /db_xref="EcoGene:EG13863" /db_xref="GeneID:945606" CDS complement(1086521..1087846) /gene="pgaC" /locus_tag="b1022" /gene_synonym="ECK1012; hmsR; JW1007; ycdQ" /function="enzyme; Surface polysaccharides and antigens" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="biofilm PGA synthase PgaCD, catalytic subunit; poly-beta-1,6-N-acetyl-D-glucosamine synthase" /protein_id="NP_415541.1" /db_xref="GI:16128986" /db_xref="ASAP:ABE-0003464" /db_xref="UniProtKB/Swiss-Prot:P75905" /db_xref="EcoGene:EG13863" /db_xref="GeneID:945606" /translation="MINRIVSFFILCLVLCIPLCVAYFHSGELMMRFVFFWPFFMSIM WIVGGVYFWVYRERHWPWGENAPAPQLKDNPSISIIIPCFNEEKNVEETIHAALAQRY ENIEVIAVNDGSTDKTRAILDRMAAQIPHLRVIHLAQNQGKAIALKTGAAAAKSEYLV CIDGDALLDRDAAAYIVEPMLYNPRVGAVTGNPRIRTRSTLVGKIQVGEYSSIIGLIK RTQRIYGNVFTVSGVIAAFRRSALAEVGYWSDDMITEDIDISWKLQLNQWTIFYEPRA LCWILMPETLKGLWKQRLRWAQGGAEVFLKNMTRLWRKENFRMWPLFFEYCLTTIWAF TCLVGFIIYAVQLAGVPLNIELTHIAATHTAGILLCTLCLLQFIVSLMIENRYEHNLT SSLFWIIWFPVIFWMLSLATTLVSFTRVMLMPKKQRARWVSPDRGILRG" gene complement(1087839..1089857) /gene="pgaB" /locus_tag="b1023" /gene_synonym="ECK1013; JW5142; ycdR" /db_xref="EcoGene:EG13864" /db_xref="GeneID:945604" CDS complement(1087839..1089857) /gene="pgaB" /locus_tag="b1023" /gene_synonym="ECK1013; JW5142; ycdR" /function="transport; Surface polysaccharides & antigens" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="poly-beta-1,6-N-acetyl-D-glucosamine (PGA) N-deacetylase outer membrane export lipoprotein" /protein_id="NP_415542.1" /db_xref="GI:16128987" /db_xref="ASAP:ABE-0003467" /db_xref="UniProtKB/Swiss-Prot:P75906" /db_xref="EcoGene:EG13864" /db_xref="GeneID:945604" /translation="MLRNGNKYLLMLVSIIMLTACISQSRTSFIPPQDRESLLAEQPW PHNGFVAISWHNVEDEAADQRFMSVRTSALREQFAWLRENGYQPVSIAQIREAHRGGK PLPEKAVVLTFDDGYQSFYTRVFPILQAFQWPAVWAPVGSWVDTPADKQVKFGDELVD REYFATWQQVREVARSRLVELASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYET AAEYRERIRLDAVKMTEYLRTKVEVNPHVFVWPYGEANGIAIEELKKLGYDMFFTLES GLANASQLDSIPRVLIANNPSLKEFAQQIITVQEKSPQRIMHIDLDYVYDENLQQMDR NIDVLIQRVKDMQISTVYLQAFADPDGDGLVKEVWFPNRLLPMKADIFSRVAWQLRTR SGVNIYAWMPVLSWDLDPTLTRVKYLPTGEKKAQIHPEQYHRLSPFDDRVRAQVGMLY EDLAGHAAFDGILFHDDALLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWAR FKSRALTDFTLELSARVKAIRGPHIKTARNIFALPVIQPESEAWFAQNYADFLKSYDW TAIMAMPYLEGVAEKSADQWLIQLTNQIKNIPQAKDKSILELQAQNWQKNGQHQAISS QQLAHWMSLLQLNGVKNYGYYPDNFLHNQPEIDLIRPEFSTAWYPKND" gene complement(1089866..1092289) /gene="pgaA" /locus_tag="b1024" /gene_synonym="ECK1014; JW1010; ycdS" /db_xref="EcoGene:EG13865" /db_xref="GeneID:945596" CDS complement(1089866..1092289) /gene="pgaA" /locus_tag="b1024" /gene_synonym="ECK1014; JW1010; ycdS" /function="transport; Surface polysaccharides & antigens" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative outer membrane protein" /codon_start=1 /transl_table=11 /product="biofilm adhesin polysaccharide PGA secretin; OM porin; poly-beta-1,6-N-acetyl-D-glucosamine export protein" /protein_id="NP_415543.1" /db_xref="GI:16128988" /db_xref="ASAP:ABE-0003469" /db_xref="UniProtKB/Swiss-Prot:P69434" /db_xref="EcoGene:EG13865" /db_xref="GeneID:945596" /translation="MYSSSRKRCPKTKWALKLLTAAFLAASPAAKSAVNNAYDALIIE ARKGNTQPALSWFALKSALSNNQIADWLQIALWAGQDKQVITVYNRYRHQQLPARGYA AVAVAYRNLQQWQNSLTLWQKALSLEPQNKDYQRGQILTLADAGHYDTALVKLKQLNS GAPDKANLLAEAYIYKLAGRHQDELRAMTESLPENASTQQYPTEYVQALRNNQLAAAI DDANLTPDIRADIHAELVRLSFMPTRSESERYAIADRALAQYAALEILWHDNPDRTAQ YQRIQVDHLGALLTRDRYKDVISHYQRLKKTGQIIPPWGQYWVASAYLKDHQPKKAQS IMTELFYHKETIAPDLSDEELADLFYSHLESENYPGALTVTQHTINTSPPFLRLMGTP TSIPNDTWLQGHSFLSTVAKYSNDLPQAEMTARELAYNAPGNQGLRIDYASVLQARGW PRAAENELKKAEVIEPRNINLEVEQAWTALTLQEWQQAAVLTHDVVEREPQDPGVVRL KRAVDVHNLAELRIAGSTGIDAEGPDSGKHDVDLTTIVYSPPLKDNWRGFAGFGYADG QFSEGKGIVRDWLAGVEWRSRNIWLEAEYAERVFNHEHKPGARLSGWYDFNDNWRIGS QLERLSHRVPLRAMKNGVTGNSAQAYVRWYQNERRKYGVSWAFTDFSDSNQRHEVSLE GQERIWSSPYLIVDFLPSLYYEQNTEHDTPYYNPIKTFDIVPAFEASHLLWRSYENSW EQIFSAGVGASWQKHYGTDVVTQLGYGQRISWNDVIDAGATLRWEKRPYDGDREHNLY VEFDMTFRF" gene 1092876..1094234 /gene="ycdT" /locus_tag="b1025" /gene_synonym="ECK1015; JW5143" /db_xref="EcoGene:EG13866" /db_xref="GeneID:945593" CDS 1092876..1094234 /gene="ycdT" /locus_tag="b1025" /gene_synonym="ECK1015; JW5143" /codon_start=1 /transl_table=11 /product="diguanylate cyclase, membrane-anchored" /protein_id="NP_415544.1" /db_xref="GI:16128989" /db_xref="ASAP:ABE-0003472" /db_xref="UniProtKB/Swiss-Prot:P75908" /db_xref="EcoGene:EG13866" /db_xref="GeneID:945593" /translation="MEKDYLRISSTVLVSLLFGLALVLVNSWFNQPGVEEVVPRSTYL MVMIALFFIDTVAFIFMQLYFIYDRRQFSNCVLSLAFLSCLIYFVITVIIIQQIIEER LTSSVVQNDIAIYYLFRQMSLCILIFLALVNKVSENTKQRNLFSKKMTLCISLFFVFG GPIVAHILSSHYESYNLHIAELTNENGQVVWKASYVTIMIFMWLTLLSVNLYFNGLRY DIWNGVTVIAFCAVLYNISLLFMSRYSVSTWYISRTIEVVSKLTVMVIFMCHIFSALR VTKNIAHRDPLTNIFNRNYFFNELTVQSASAQKTPYCVMIMDIDHFKKVNDTWGHPVG DQVIKTVVNIIGKSIRPDDLLARVGGEEFGVLLTDIDTERAKALAERIRENVERLTGD NPEYAIPQKVTISIGAVVTQENALNPNEIYRLADNALYEAKETGRNKVVVRDVVNFCE SP" mobile_element complement(1094245..1095502) /mobile_element_type="insertion sequence:IS3D" gene complement(1094275..1095141) /gene="insF1" /locus_tag="b1026" /gene_synonym="ECK0299" /db_xref="EcoGene:EG40006" /db_xref="GeneID:945587" CDS complement(1094275..1095141) /gene="insF1" /locus_tag="b1026" /gene_synonym="ECK0299" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS3 transposase B" /protein_id="NP_415545.1" /db_xref="GI:16128990" /db_xref="ASAP:ABE-0003475" /db_xref="UniProtKB/Swiss-Prot:P0CF82" /db_xref="EcoGene:EG40006" /db_xref="GeneID:945587" /translation="MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQ FRQHCDSVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKF SPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVI GWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSM SAKGCCYDNACVESFFHSLKVECIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGG LSPEQFENKNLA" gene complement(1095138..1095437) /gene="insE1" /locus_tag="b1027" /gene_synonym="ECK0298" /db_xref="EcoGene:EG40005" /db_xref="GeneID:945584" CDS complement(1095138..1095437) /gene="insE1" /locus_tag="b1027" /gene_synonym="ECK0298" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS3 transposase A" /protein_id="NP_415546.2" /db_xref="GI:226524706" /db_xref="ASAP:ABE-0003477" /db_xref="UniProtKB/Swiss-Prot:P0CF69" /db_xref="EcoGene:EG40005" /db_xref="GeneID:945584" /translation="MTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYES QLYNWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATYFAKRLK" gene 1095505..1095846 /gene="ymdE" /locus_tag="b1028" /gene_synonym="ECK1016; JW5145" /pseudo /db_xref="EcoGene:EG14357" /db_xref="GeneID:945589" CDS 1095505..1095846 /gene="ymdE" /locus_tag="b1028" /gene_synonym="ECK1016; JW5145" /note="pseudogene" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0003486" /db_xref="UniProtKB/Swiss-Prot:Q7DFV4" /db_xref="EcoGene:EG14357" /db_xref="GeneID:945589" gene 1095843..1096829 /gene="ycdU" /locus_tag="b1029" /gene_synonym="ECK1017; JW1015" /db_xref="EcoGene:EG13867" /db_xref="GeneID:945592" CDS 1095843..1096829 /gene="ycdU" /locus_tag="b1029" /gene_synonym="ECK1017; JW1015" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_415548.1" /db_xref="GI:16128993" /db_xref="ASAP:ABE-0003489" /db_xref="UniProtKB/Swiss-Prot:P75910" /db_xref="EcoGene:EG13867" /db_xref="GeneID:945592" /translation="MIPDYLTFIRFQDKRNLIYIYAIGLILIGFYWKNAGFTFPSEDI GVVSGILALVLYNFIFDLKAYWAYKCVTKNIDFSWFKKKQNHKIELFLTQPLVAGFLS LIMLSAMSWGLYQLLPSLYALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYK SLTRYVLLSVCISTVVNLLTISPLRNSDSFVTEGQWLTFKSIIALLILCGVVLAINLF FLRFSKRYAFLGRLFLQEIDLFFSSENALSTFFAKPLWLRLFILLVIEVMWITLVSVL ATLVEWRIWFEAYFLLCYVPCLIYYFFYCRFLWHNDFMMACDMYFRWGHFNK" gene complement(1097565..1097652) /gene="serX" /locus_tag="b1032" /gene_synonym="ECK1018; JWR0027" /db_xref="EcoGene:EG30097" /db_xref="GeneID:945714" tRNA complement(1097565..1097652) /gene="serX" /locus_tag="b1032" /gene_synonym="ECK1018; JWR0027" /product="tRNA-Ser" /note="anticodon: GGA" /db_xref="ASAP:ABE-0003498" /db_xref="EcoGene:EG30097" /db_xref="GeneID:945714" gene 1097886..1098824 /gene="ghrA" /locus_tag="b1033" /gene_synonym="ECK1019; JW5146; ycdW" /db_xref="EcoGene:EG13869" /db_xref="GeneID:946431" CDS 1097886..1098824 /gene="ghrA" /locus_tag="b1033" /gene_synonym="ECK1019; JW5146; ycdW" /EC_number="1.1.1.79" /function="enzyme; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 11237876" /note="putative dehydrogenase" /codon_start=1 /transl_table=11 /product="glyoxylate/hydroxypyruvate reductase A" /protein_id="NP_415551.2" /db_xref="GI:90111205" /db_xref="ASAP:ABE-0003503" /db_xref="UniProtKB/Swiss-Prot:P75913" /db_xref="EcoGene:EG13869" /db_xref="GeneID:946431" /translation="MDIIFYHPTFDTQWWIEALRKAIPQARVRAWKSGDNDSADYALV WHPPVEMLAGRDLKAVFALGAGVDSILSKLQAHPEMLNPSVPLFRLEDTGMGEQMQEY AVSQVLHWFRRFDDYRIQQNSSHWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTWRF PLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPD GAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHV AAITRPAEAVEYISRTIAQLEKGERVCGQVDRARGY" gene 1098879..1099616 /gene="ycdX" /locus_tag="b1034" /gene_synonym="ECK1020; JW1017" /db_xref="EcoGene:EG13870" /db_xref="GeneID:948477" CDS 1098879..1099616 /gene="ycdX" /locus_tag="b1034" /gene_synonym="ECK1020; JW1017" /function="enzyme; Central intermediary metabolism: Phosphorus compounds" /GO_process="GO:0006261 - DNA-dependent DNA replication" /codon_start=1 /transl_table=11 /product="alkaline phosphatase" /protein_id="NP_415552.1" /db_xref="GI:16128997" /db_xref="ASAP:ABE-0003508" /db_xref="UniProtKB/Swiss-Prot:P75914" /db_xref="EcoGene:EG13870" /db_xref="GeneID:948477" /translation="MYPVDLHMHTVASTHAYSTLSDYIAQAKQKGIKLFAITDHGPDM EDAPHHWHFINMRIWPRVVDGVGILRGIEANIKNVDGEIDCSGKMFDSLDLIIAGFHE PVFAPHDKATNTQAMIATIASGNVHIISHPGNPKYEIDVKAVAEAAAKHQVALEINNS SFLHSRKGSEDNCREVAAAVRDAGGWVALGSDSHTAFTMGEFEECLKILDAVDFPPER ILNVSPRRLLNFLESRGMAPIAEFADL" gene 1099640..1100194 /gene="ycdY" /locus_tag="b1035" /gene_synonym="ECK1021; JW1018" /db_xref="EcoGene:EG13871" /db_xref="GeneID:945609" CDS 1099640..1100194 /gene="ycdY" /locus_tag="b1035" /gene_synonym="ECK1021; JW1018" /function="putative enzyme; Not classified" /note="putative oxidoreductase component" /codon_start=1 /transl_table=11 /product="redox enzyme maturation protein (REMP) chaperone for YcdX" /protein_id="NP_415553.1" /db_xref="GI:16128998" /db_xref="ASAP:ABE-0003511" /db_xref="UniProtKB/Swiss-Prot:P75915" /db_xref="EcoGene:EG13871" /db_xref="GeneID:945609" /translation="MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQ DELLTRLQKSCDMTQVSADYNALFIGDECAVPPYRSAWVEGATEAEVRAFLSERGMPL ADTPADHIGTLLLAASWLEDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFW RTMAPLTRDAISAMWDELEEDSEE" gene 1100296..1100787 /gene="ycdZ" /locus_tag="b1036" /gene_synonym="ECK1022; JW5147; nupT" /db_xref="EcoGene:EG13872" /db_xref="GeneID:945617" CDS 1100296..1100787 /gene="ycdZ" /locus_tag="b1036" /gene_synonym="ECK1022; JW5147; nupT" /codon_start=1 /transl_table=11 /product="DUF1097 family inner membrane protein" /protein_id="NP_415554.4" /db_xref="GI:90111206" /db_xref="ASAP:ABE-0003514" /db_xref="UniProtKB/Swiss-Prot:P75916" /db_xref="EcoGene:EG13872" /db_xref="GeneID:945617" /translation="MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQ GGLKGLAISAATLLSGVVWAMVIIYGSALAPHLEILGYVITGIVAFLMCIQAKQLLLS FVPGTFIGACATFAGQGDWKLVLPSLALGLIFGYAMKNSGLWLAARSAKTAHREQEIK NKA" repeat_region 1100821..1100839 /note="REP96 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1100851..1101684) /gene="csgG" /locus_tag="b1037" /gene_synonym="agfG; ECK1023; JW1020" /db_xref="EcoGene:EG13413" /db_xref="GeneID:945619" CDS complement(1100851..1101684) /gene="csgG" /locus_tag="b1037" /gene_synonym="agfG; ECK1023; JW1020" /function="structural component; Surface structures" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall; GO:0009289 - pilus" /note="curli production assembly/transport component, 2nd curli operon" /codon_start=1 /transl_table=11 /product="curli production assembly/transport outer membrane lipoprotein" /protein_id="NP_415555.1" /db_xref="GI:16129000" /db_xref="ASAP:ABE-0003516" /db_xref="UniProtKB/Swiss-Prot:P0AEA2" /db_xref="EcoGene:EG13413" /db_xref="GeneID:945619" /translation="MQRLFLLVAVMLLSGCLTAPPKEAARPTLMPRAQSYKDLTHLPA PTGKIFVSVYNIQDETGQFKPYPASNFSTAVPQSATAMLVTALKDSRWFIPLERQGLQ NLLNERKIIRAAQENGTVAINNRIPLQSLTAANIMVEGSIIGYESNVKSGGVGARYFG IGADTQYQLDQIAVNLRVVNVSTGEILSSVNTSKTILSYEVQAGVFRFIDYQRLLEGE VGYTSNEPVMLCLMSAIETGVIFLINDGIDRGLWDLQNKAERQNDILVKYRHMSVPPE S" gene complement(1101711..1102127) /gene="csgF" /locus_tag="b1038" /gene_synonym="agfF; ECK1024; JW1021" /db_xref="EcoGene:EG13412" /db_xref="GeneID:945622" CDS complement(1101711..1102127) /gene="csgF" /locus_tag="b1038" /gene_synonym="agfF; ECK1024; JW1021" /function="structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="curli production assembly/transport component, 2nd curli operon" /codon_start=1 /transl_table=11 /product="curli nucleation outer membrane protein" /protein_id="NP_415556.1" /db_xref="GI:16129001" /db_xref="ASAP:ABE-0003519" /db_xref="UniProtKB/Swiss-Prot:P0AE98" /db_xref="EcoGene:EG13412" /db_xref="GeneID:945622" /translation="MRVKHAVVLLMLISPLSWAGTMTFQFRNPNFGGNPNNGAFLLNS AQAQNSYKDPSYNDDFGIETPSALDNFTQAIQSQILGGLLSNINTGKPGRMVTNDYIV DIANRDGQLQLNVTDRKTGQTSTIQVSGLQNNSTDF" gene complement(1102152..1102541) /gene="csgE" /locus_tag="b1039" /gene_synonym="agfE; ECK1025; JW1022" /db_xref="EcoGene:EG13411" /db_xref="GeneID:945711" CDS complement(1102152..1102541) /gene="csgE" /locus_tag="b1039" /gene_synonym="agfE; ECK1025; JW1022" /function="structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="curli production assembly/transport component, 2nd curli operon" /codon_start=1 /transl_table=11 /product="curlin secretion specificity factor" /protein_id="NP_415557.1" /db_xref="GI:16129002" /db_xref="ASAP:ABE-0003528" /db_xref="UniProtKB/Swiss-Prot:P0AE95" /db_xref="EcoGene:EG13411" /db_xref="GeneID:945711" /translation="MKRYLRWIVAAEFLFAAGNLHAVEVEVPGLLTDHTVSSIGHDFY RAFSDKWESDYTGNLTINERPSARWGSWITITVNQDVIFQTFLFPLKRDFEKTVVFAL IQTEEALNRRQINQALLSTGDLAHDEF" gene complement(1102546..1103196) /gene="csgD" /locus_tag="b1040" /gene_synonym="agfD; ECK1026; JW1023" /db_xref="EcoGene:EG13410" /db_xref="GeneID:949119" CDS complement(1102546..1103196) /gene="csgD" /locus_tag="b1040" /gene_synonym="agfD; ECK1026; JW1023" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="putative 2-component transcriptional regulator for 2nd curli operon" /codon_start=1 /transl_table=11 /product="csgBAC operon transcriptional regulator" /protein_id="NP_415558.1" /db_xref="GI:16129003" /db_xref="ASAP:ABE-0003530" /db_xref="UniProtKB/Swiss-Prot:P52106" /db_xref="EcoGene:EG13410" /db_xref="GeneID:949119" /translation="MFNEVHSIHGHTLLLITKSSLQATALLQHLKQSLAITGKLHNIQ RSLDDISSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWP HINGVFYSMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHRE KEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR" gene 1103951..1104406 /gene="csgB" /locus_tag="b1041" /gene_synonym="agfB; ECK1027; JW1024" /db_xref="EcoGene:EG12621" /db_xref="GeneID:947391" CDS 1103951..1104406 /gene="csgB" /locus_tag="b1041" /gene_synonym="agfB; ECK1027; JW1024" /function="structural component; Surface structures" /GO_component="GO:0009279 - cell outer membrane; GO:0009289 - pilus" /GO_process="GO:0009101 - glycoprotein biosynthetic process" /note="minor curlin subunit precursor, similar ro CsgA" /codon_start=1 /transl_table=11 /product="curlin nucleator protein, minor subunit in curli complex" /protein_id="NP_415559.1" /db_xref="GI:16129004" /db_xref="ASAP:ABE-0003534" /db_xref="UniProtKB/Swiss-Prot:P0ABK7" /db_xref="EcoGene:EG12621" /db_xref="GeneID:947391" /translation="MKNKLLFMMLTILGAPGIAAAAGYDLANSEYNFAVNELSKSSFN QAAIIGQAGTNNSAQLRQGGSKLLAVVAQEGSSNRAKIDQTGDYNLAYIDQAGSANDA SISQGAYGNTAMIIQKGSGNKANITQYGTQKTAIVVQRQSQMAIRVTQR" gene 1104447..1104902 /gene="csgA" /locus_tag="b1042" /gene_synonym="agfA; ECK1028; JW1025" /db_xref="EcoGene:EG11489" /db_xref="GeneID:949055" CDS 1104447..1104902 /gene="csgA" /locus_tag="b1042" /gene_synonym="agfA; ECK1028; JW1025" /function="regulator; Surface structures" /GO_component="GO:0009279 - cell outer membrane; GO:0009289 - pilus" /GO_process="GO:0009101 - glycoprotein biosynthetic process" /note="curlin major subunit, coiled surface structures; cryptic" /codon_start=1 /transl_table=11 /product="curlin subunit, amyloid curli fibers, cryptic" /protein_id="NP_415560.1" /db_xref="GI:16129005" /db_xref="ASAP:ABE-0003537" /db_xref="UniProtKB/Swiss-Prot:P28307" /db_xref="EcoGene:EG11489" /db_xref="GeneID:949055" /translation="MKLLKVAAIAAIVFSGSALAGVVPQYGGGGNHGGGGNNSGPNSE LNIYQYGGGNSALALQTDARNSDLTITQHGGGNGADVGQGSDDSSIDLTQRGFGNSAT LDQWNGKNSEMTVKQFGGGNGAAVDQTASNSSVNVTQVGFGNNATAHQY" gene 1104961..1105293 /gene="csgC" /locus_tag="b1043" /gene_synonym="agfC; ECK1029; JW1026; ycdE" /db_xref="EcoGene:EG13414" /db_xref="GeneID:945623" CDS 1104961..1105293 /gene="csgC" /locus_tag="b1043" /gene_synonym="agfC; ECK1029; JW1026; ycdE" /function="putative structure; Not classified" /GO_component="GO:0009289 - pilus" /note="putative curli production protein" /codon_start=1 /transl_table=11 /product="curli assembly protein" /protein_id="NP_415561.1" /db_xref="GI:16129006" /db_xref="ASAP:ABE-0003542" /db_xref="UniProtKB/Swiss-Prot:P52107" /db_xref="EcoGene:EG13414" /db_xref="GeneID:945623" /translation="MNTLLLLAALSSQITFNTTQQGDVYTIIPEVTLTQSCLCRVQIL SLREGSSGQSQTKQEKTLSLPANQPIALTKLSLNISPDDRVKIVVTVSDGQSLHLSQQ WPPSSEKS" gene 1105414..1105725 /gene="ymdA" /locus_tag="b1044" /gene_synonym="ECK1030; JW1031" /db_xref="EcoGene:EG13873" /db_xref="GeneID:949012" CDS 1105414..1105725 /gene="ymdA" /locus_tag="b1044" /gene_synonym="ECK1030; JW1031" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_415562.1" /db_xref="GI:16129007" /db_xref="ASAP:ABE-0003545" /db_xref="UniProtKB/Swiss-Prot:P75917" /db_xref="EcoGene:EG13873" /db_xref="GeneID:949012" /translation="MFRPFLNSLMLGSLFFPFIAIAGSTVQGGVIHFYGQIVEPACDV STQSSPVEMNCPQNGSIPGKTYSSKALMSGNVKNAQIASVKVQYLDKQKKLAVMNIEY N" gene 1105820..1106353 /gene="ymdB" /locus_tag="b1045" /gene_synonym="ECK1031; JW1032" /db_xref="EcoGene:EG13874" /db_xref="GeneID:946987" CDS 1105820..1106353 /gene="ymdB" /locus_tag="b1045" /gene_synonym="ECK1031; JW1032" /note="putative polyprotein" /codon_start=1 /transl_table=11 /product="O-acetyl-ADP-ribose deacetylase; RNase III inhibitor during cold shock; putative cardiolipin synthase C regulatory subunit" /protein_id="NP_415563.1" /db_xref="GI:16129008" /db_xref="ASAP:ABE-0003549" /db_xref="UniProtKB/Swiss-Prot:P0A8D6" /db_xref="EcoGene:EG13874" /db_xref="GeneID:946987" /translation="MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGP ALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYL NSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYD EENAHLYERLLTQQGDE" gene 1106355..1107776 /gene="clsC" /locus_tag="b1046" /gene_synonym="ECK1032; JW5150; ymdC" /db_xref="EcoGene:EG13875" /db_xref="GeneID:947321" CDS 1106355..1107776 /gene="clsC" /locus_tag="b1046" /gene_synonym="ECK1032; JW5150; ymdC" /function="Enzyme; Macromolecule synthesis: Phospholipids" /note="putative synthase" /codon_start=1 /transl_table=11 /product="stationary phase cardiolipin synthase 3" /protein_id="NP_415564.2" /db_xref="GI:90111207" /db_xref="ASAP:ABE-0003551" /db_xref="UniProtKB/Swiss-Prot:P75919" /db_xref="EcoGene:EG13875" /db_xref="GeneID:947321" /translation="MPRLASAVLPLCSQHPGQCGLFPLEKSLDAFAARYRLAEMAEHT LDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLDDNNTPGLDDILRLLDSHPRIEV RLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVVTLVGGRNIGDAYFGAGEEPL FSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDVPEGEMADRIELPASWHNDAM THRYLRKMESSPFINHLVDGTLPLIWAKTRLLSDDPAKGEGKAKRHSLLPQRLFDIMG SPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTNSLAANDVAVVHAGYARWRKK LLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKTFSIDGKTVFIGSFNFDPRST LLNTEMGFVIESETLAQLIDKRFIQSQYDAAWQLRLDRWGRINWVDRHAKKEIILKKE PATSFWKRVMVRLASILPVEWLL" gene complement(1107784..1108941) /gene="opgC" /locus_tag="b1047" /gene_synonym="ECK1033; JW1034; mdoC; ymdD" /db_xref="EcoGene:EG13876" /db_xref="GeneID:946944" CDS complement(1107784..1108941) /gene="opgC" /locus_tag="b1047" /gene_synonym="ECK1033; JW1034; mdoC; ymdD" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009250 - glucan biosynthetic process; GO:0006970 - response to osmotic stress" /codon_start=1 /transl_table=11 /product="OPG biosynthetic transmembrane succinyltransferase" /protein_id="NP_415565.1" /db_xref="GI:16129010" /db_xref="ASAP:ABE-0003553" /db_xref="UniProtKB/Swiss-Prot:P75920" /db_xref="EcoGene:EG13876" /db_xref="GeneID:946944" /translation="MNPVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAES SLWLTLFNDFIHSFRMQVFFVISGYFSYMLFLRYPLKKWWKVRVERVGIPMLTAIPLL TLPQFIMLQYVKGKAESWPGLSLYDKYNTLAWELISHLWFLLVLVVMTTLCVWIFKRI RNNLENSDKTNKKFSMVKLSVIFLCLGIGYAVIRRTIFIVYPPILSNGMFNFIVMQTL FYLPFFILGALAFIFPHLKALFTTPSRGCTLAAALAFVAYLLNQRYGSGDAWMYETES VITMVLGLWMVNVVFSFGHRLLNFQSARVTYFVNASLFIYLVHHPLTLFFGAYITPHI TSNWLGFLCGLIFVVGIAIILYEIHLRIPLLKFLFSGKPVVKRENDKAPAR" gene 1109335..1110870 /gene="opgG" /locus_tag="b1048" /gene_synonym="ECK1034; JW1035; mdoA; mdoG" /db_xref="EcoGene:EG11885" /db_xref="GeneID:945005" CDS 1109335..1110870 /gene="opgG" /locus_tag="b1048" /gene_synonym="ECK1034; JW1035; mdoA; mdoG" /function="enzyme; Osmoregulated periplasmic glucan (OPG) biosynthesis" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0009250 - glucan biosynthetic process; GO:0006970 - response to osmotic stress" /note="periplasmic glucans biosynthesis protein" /codon_start=1 /transl_table=11 /product="OPG biosynthetic periplasmic beta-1,6 branching glycosyltransferase" /protein_id="NP_415566.1" /db_xref="GI:16129011" /db_xref="ASAP:ABE-0003558" /db_xref="UniProtKB/Swiss-Prot:P33136" /db_xref="EcoGene:EG11885" /db_xref="GeneID:945005" /translation="MMKMRWLSAAVMLTLYTSSSWAFSIDDVAKQAQSLAGKGYETPK SNLPSVFRDMKYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATA VKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVI GAGQVYGLSARGLAIDTALPSGEEFPRFKEFWIERPKPTDKRLTIYALLDSPRATGAY KFVVMPGRDTVVDVQSKIYLRDKVGKLGVAPLTSMFLFGPNQPSPANNYRPELHDSNG LSIHAGNGEWIWRPLNNPKHLAVSSFSMENPQGFGLLQRGRDFSRFEDLDDRYDLRPS AWVTPKGEWGKGSVELVEIPTNDETNDNIVAYWTPDQLPEPGKEMNFKYTITFSRDED KLHAPDNAWVQQTRRSTGDVKQSNLIRQPDGTIAFVVDFTGAEMKKLPEDTPVTAQTS IGDNGEIVESTVRYNPVTKGWRLVMRVKVKDAKKTTEMRAALVNADQTLSETWSYQLP ANE" gene 1110863..1113406 /gene="opgH" /locus_tag="b1049" /gene_synonym="ECK1035; JW1037; mdoA; mdoH" /db_xref="EcoGene:EG11886" /db_xref="GeneID:945624" CDS 1110863..1113406 /gene="opgH" /locus_tag="b1049" /gene_synonym="ECK1035; JW1037; mdoA; mdoH" /function="enzyme; Osmoregulated periplasmic glucan (OPG) biosynthesis biosynthesis" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006970 - response to osmotic stress" /note="membrane glycosyltransferase; synthesis of membrane-derived oligosaccharide (MDO)" /codon_start=1 /transl_table=11 /product="OPG biosynthetic ACP-dependent transmembrane UDP-glucose beta-1,2 glycosyltransferase; nutrient-dependent cell size regulator, FtsZ assembly antagonist" /protein_id="NP_415567.1" /db_xref="GI:16129012" /db_xref="ASAP:ABE-0003560" /db_xref="UniProtKB/Swiss-Prot:P62517" /db_xref="EcoGene:EG11886" /db_xref="GeneID:945624" /translation="MNKTTEYIDAMPIAASEKAALPKTDIRAVHQALDAEHRTWARED DSPQGSVKARLEQAWPDSLADGQLIKDDEGRDQLKAMPEAKRSSMFPDPWRTNPVGRF WDRLRGRDVTPRYLARLTKEEQESEQKWRTVGTIRRYILLILTLAQTVVATWYMKTIL PYQGWALINPMDMVGQDLWVSFMQLLPYMLQTGILILFAVLFCWVSAGFWTALMGFLQ LLIGRDKYSISASTVGDEPLNPEHRTALIMPICNEDVNRVFAGLRATWESVKATGNAK HFDVYILSDSYNPDICVAEQKAWMELIAEVGGEGQIFYRRRRRRVKRKSGNIDDFCRR WGSQYSYMVVLDADSVMTGDCLCGLVRLMEANPNAGIIQSSPKASGMDTLYARCQQFA TRVYGPLFTAGLHFWQLGESHYWGHNAIIRVKPFIEHCALAPLPGEGSFAGSILSHDF VEAALMRRAGWGVWIAYDLPGSYEELPPNLLDELKRDRRWCHGNLMNFRLFLVKGMHP VHRAVFLTGVMSYLSAPLWFMFLALSTALQVVHALTEPQYFLQPRQLFPVWPQWRPEL AIALFASTMVLLFLPKLLSILLIWCKGTKEYGGFWRVTLSLLLEVLFSVLLAPVRMLF HTVFVVSAFLGWEVVWNSPQRDDDSTSWGEAFKRHGSQLLLGLVWAVGMAWLDLRFLF WLAPIVFSLILSPFVSVISSRATVGLRTKRWKLFLIPEEYSPPQVLVDTDRFLEMNRQ RSLDDGFMHAVFNPSFNALATAMATARHRASKVLEIARDRHVEQALNETPEKLNRDRR LVLLSDPVTMARLHFRVWNSPERYSSWVSYYEGIKLNPLALRKPDAASQ" repeat_region 1113417..1113514 /note="RIP97 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene 1113579..1113806 /gene="yceK" /locus_tag="b1050" /gene_synonym="ECK1036; JW5151" /db_xref="EcoGene:EG12689" /db_xref="GeneID:945613" CDS 1113579..1113806 /gene="yceK" /locus_tag="b1050" /gene_synonym="ECK1036; JW5151" /codon_start=1 /transl_table=11 /product="outer membrane integrity lipoprotein" /protein_id="NP_415568.1" /db_xref="GI:16129013" /db_xref="ASAP:ABE-0003565" /db_xref="UniProtKB/Swiss-Prot:P0AB31" /db_xref="EcoGene:EG12689" /db_xref="GeneID:945613" /translation="MRLIVVSIMVTLLSGCGSIISRTIPGQGHGNQYYPGVQWDVRDS AWRYVTILDLPFSLVFDTLLLPIDIHHGPYE" gene complement(1113807..1114181) /gene="msyB" /locus_tag="b1051" /gene_synonym="ECK1037; JW1039" /db_xref="EcoGene:EG11338" /db_xref="GeneID:945612" CDS complement(1113807..1114181) /gene="msyB" /locus_tag="b1051" /gene_synonym="ECK1037; JW1039" /function="phenotype; Protein, peptide secretion" /note="acidic protein suppresses mutants lacking function of protein export" /codon_start=1 /transl_table=11 /product="multicopy suppressor of secY and secA" /protein_id="NP_415569.4" /db_xref="GI:90111208" /db_xref="ASAP:ABE-0003567" /db_xref="UniProtKB/Swiss-Prot:P25738" /db_xref="EcoGene:EG11338" /db_xref="GeneID:945612" /translation="MTMYATLEEAIDAAREEFLADNPGIDAEDANVQQFNAQKYVLQD GDIMWQVEFFADEGEEGECLPMLSGEAAQSVFDGDYDEIEIRQEWQEENTLHEWDEGE FQLEPPLDTEEGRAAADEWDER" gene complement(1114264..1115490) /gene="mdtG" /locus_tag="b1053" /gene_synonym="ECK1038; JW1040; yceE" /db_xref="EcoGene:EG11343" /db_xref="GeneID:945627" CDS complement(1114264..1115490) /gene="mdtG" /locus_tag="b1053" /gene_synonym="ECK1038; JW1040; yceE" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative drug efflux system protein" /protein_id="NP_415571.1" /db_xref="GI:16129016" /db_xref="ASAP:ABE-0003572" /db_xref="UniProtKB/Swiss-Prot:P25744" /db_xref="EcoGene:EG11343" /db_xref="GeneID:945627" /translation="MSPCENDTPINWKRNLIVAWLGCFLTGAAFSLVMPFLPLYVEQL GVTGHSALNMWSGIVFSITFLFSAIASPFWGGLADRKGRKLMLLRSALGMGIVMVLMG LAQNIWQFLILRALLGLLGGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPM AGGLLADSYGLRPVFFITASVLILCFFVTLFCIREKFQPVSKKEMLHMREVVTSLKNP KLVLSLFVTTLIIQVATGSIAPILTLYVRELAGNVSNVAFISGMIASVPGVAALLSAP RLGKLGDRIGPEKILITALIFSVLLLIPMSYVQTPLQLGILRFLLGAADGALLPAVQT LLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAV YSWNSLRRRRIPQVSN" repeat_region 1115626..1115652 /note="REP98 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1115662..1116582) /gene="lpxL" /locus_tag="b1054" /gene_synonym="ECK1039; htrB; JW1041; waaM" /db_xref="EcoGene:EG10464" /db_xref="GeneID:946216" CDS complement(1115662..1116582) /gene="lpxL" /locus_tag="b1054" /gene_synonym="ECK1039; htrB; JW1041; waaM" /EC_number="2.3.1.-" /function="factor; Adaptations, atypical conditions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009245 - lipid A biosynthetic process" /note="heat shock protein" /codon_start=1 /transl_table=11 /product="lauryl-acyl carrier protein (ACP)-dependent acyltransferase" /protein_id="NP_415572.1" /db_xref="GI:16129017" /db_xref="ASAP:ABE-0003574" /db_xref="UniProtKB/Swiss-Prot:P0ACV0" /db_xref="EcoGene:EG10464" /db_xref="GeneID:946216" /translation="MTNLPKFSTALLHPRYWLTWLGIGVLWLVVQLPYPVIYRLGCGL GKLALRFMKRRAKIVHRNLELCFPEMSEQERRKMVVKNFESVGMGLMETGMAWFWPDR RIARWTEVIGMEHIRDVQAQKRGILLVGIHFLTLELGARQFGMQEPGIGVYRPNDNPL IDWLQTWGRLRSNKSMLDRKDLKGMIKALKKGEVVWYAPDHDYGPRSSVFVPLFAVEQ AATTTGTWMLARMSGACLVPFVPRRKPDGKGYQLIMLPPECSPPLDDAETTAAWMNKV VEKCIMMAPEQYMWLHRRFKTRPEGVPSRY" gene 1116807..1117859 /gene="yceA" /locus_tag="b1055" /gene_synonym="ECK1040; JW1042" /db_xref="EcoGene:EG11116" /db_xref="GeneID:945601" CDS 1116807..1117859 /gene="yceA" /locus_tag="b1055" /gene_synonym="ECK1040; JW1042" /GO_process="GO:0007049 - cell cycle" /codon_start=1 /transl_table=11 /product="putative rhodanese-related sulfurtransferase" /protein_id="NP_415573.1" /db_xref="GI:16129018" /db_xref="ASAP:ABE-0003581" /db_xref="UniProtKB/Swiss-Prot:P24188" /db_xref="EcoGene:EG11116" /db_xref="GeneID:945601" /translation="MPVLHNRISNDALKAKMLAESEPRTTISFYKYFHIADPKATRDA LYQLFTALNVFGRVYLAHEGINAQISVPASNVETFRAQLYAFDPALEGLRLNIALDDD GKSFWVLRMKVRDRIVADGIDDPHFDASNVGEYLQAAEVNAMLDDPDALFIDMRNHYE YEVGHFENALEIPADTFREQLPKAVEMMQAHKDKKIVMYCTGGIRCEKASAWMKHNGF NKVWHIEGGIIEYARKAREQGLPVRFIGKNFVFDERMGERISDEIIAHCHQCGAPCDS HTNCKNDGCHLLFIQCPVCAEKYKGCCSEICCEESALPPEEQRRRRAGRENGNKIFNK SRGRLNTTLCIPDPTE" repeat_region 1117868..1117888 /note="REP99 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1117901..1118476) /gene="yceI" /locus_tag="b1056" /gene_synonym="ECK1041; JW1043" /db_xref="EcoGene:EG11820" /db_xref="GeneID:946145" CDS complement(1117901..1118476) /gene="yceI" /locus_tag="b1056" /gene_synonym="ECK1041; JW1043" /codon_start=1 /transl_table=11 /product="periplasmic high pH-inducible lipid-binding protein" /protein_id="NP_415574.1" /db_xref="GI:16129019" /db_xref="ASAP:ABE-0003583" /db_xref="UniProtKB/Swiss-Prot:P0A8X2" /db_xref="EcoGene:EG11820" /db_xref="GeneID:946145" /translation="MKKSLLGLTFASLMFSAGSAVAADYKIDKEGQHAFVNFRIQHLG YSWLYGTFKDFDGTFTFDEKNPAADKVNVTINTTSVDTNHAERDKHLRSADFLNTAKY PQATFTSTSVKKDGDELDITGDLTLNGVTKPVTLEAKLIGQGDDPWGGKRAGFEAEGK IKLKDFNIKTDLGPASQEVDLIISVEGVQQK" gene complement(1118480..1119046) /gene="yceJ" /locus_tag="b1057" /gene_synonym="ECK1042; JW1044" /db_xref="EcoGene:EG12659" /db_xref="GeneID:945628" CDS complement(1118480..1119046) /gene="yceJ" /locus_tag="b1057" /gene_synonym="ECK1042; JW1044" /function="putative enzyme; Not classified" /GO_process="GO:0017004 - cytochrome complex assembly" /codon_start=1 /transl_table=11 /product="putative cytochrome b561" /protein_id="NP_415575.1" /db_xref="GI:16129020" /db_xref="ASAP:ABE-0003585" /db_xref="UniProtKB/Swiss-Prot:P75925" /db_xref="EcoGene:EG12659" /db_xref="GeneID:945628" /translation="MSFTNTPERYGVISAAFHWLSAIIVYGMFALGLWMVTLSYYDGW YHKAPELHKSIGILLMMGLVIRVLWRVISPPPGPLPSYSPMTRLAARAGHLALYLLLF AIGISGYLISTADGKPISVFGWFDVPATLADAGAQADFAGALHFWLAWSVVVLSVMHG FMALKHHFIDKDDTLKRMLGKSSSDYGV" gene complement(1119307..1119447) /gene="yceO" /locus_tag="b1058" /gene_synonym="ECK1043; JW1045" /db_xref="EcoGene:EG14334" /db_xref="GeneID:945629" CDS complement(1119307..1119447) /gene="yceO" /locus_tag="b1058" /gene_synonym="ECK1043; JW1045" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_415576.1" /db_xref="GI:16129021" /db_xref="ASAP:ABE-0003588" /db_xref="UniProtKB/Swiss-Prot:P64442" /db_xref="EcoGene:EG14334" /db_xref="GeneID:945629" /translation="MRPFLQEYLMRRLLHYLINNIREHLMLYLFLWGLLAIMDLIYVF YF" gene complement(1119468..1120586) /gene="solA" /locus_tag="b1059" /gene_synonym="ECK1044; JW1046" /db_xref="EcoGene:EG12669" /db_xref="GeneID:944983" CDS complement(1119468..1120586) /gene="solA" /locus_tag="b1059" /gene_synonym="ECK1044; JW1046" /EC_number="1.5.3.2" /function="putative enzyme; Not classified" /note="sarcosine oxidase-like protein" /codon_start=1 /transl_table=11 /product="N-methyltryptophan oxidase, FAD-binding" /protein_id="NP_415577.1" /db_xref="GI:16129022" /db_xref="ASAP:ABE-0003590" /db_xref="UniProtKB/Swiss-Prot:P40874" /db_xref="EcoGene:EG12669" /db_xref="GeneID:944983" /translation="MKYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHH GDTRLIRHAYGEGEKYVPLVLRAQTLWDELSRHNEEDPIFVRSGVINLGPADSTFLAN VAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAK EAGCAQLFNCPVTAIRHDDDGVTIETADGEYQAKKAIVCAGTWVKDLLPELPVQPVRK VFAWYQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERV PFAEVASDGSEAFPFLRNVLPGIGCCLYGAACTYDNSPDEDFIIDTLPGHDNTLLITG LSGHGFKFASVLGEIAADFAQDKKSDFDLTPFRLSRFQ" gene complement(1120701..1120955) /gene="bssS" /locus_tag="b1060" /gene_synonym="ECK1045; JW5152; yceP" /db_xref="EcoGene:EG14335" /db_xref="GeneID:946104" CDS complement(1120701..1120955) /gene="bssS" /locus_tag="b1060" /gene_synonym="ECK1045; JW5152; yceP" /codon_start=1 /transl_table=11 /product="biofilm regulator" /protein_id="NP_415578.3" /db_xref="GI:49176074" /db_xref="ASAP:ABE-0003594" /db_xref="UniProtKB/Swiss-Prot:P0AB33" /db_xref="EcoGene:EG14335" /db_xref="GeneID:946104" /translation="MEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQTPNKSEQEGT EVGQTLWLTTDVARQFISILEAGIAKIESGDFQVNEYRRH" gene complement(1121242..1121487) /gene="dinI" /locus_tag="b1061" /gene_synonym="ECK1046; JW1048" /db_xref="EcoGene:EG12670" /db_xref="GeneID:945022" CDS complement(1121242..1121487) /gene="dinI" /locus_tag="b1061" /gene_synonym="ECK1046; JW1048" /function="phenotype; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006281 - DNA repair; GO:0009432 - SOS response" /note="damage-inducible protein I" /codon_start=1 /transl_table=11 /product="DNA damage-inducible protein I" /protein_id="NP_415579.1" /db_xref="GI:16129024" /db_xref="ASAP:ABE-0003599" /db_xref="UniProtKB/Swiss-Prot:P0ABR1" /db_xref="EcoGene:EG12670" /db_xref="GeneID:945022" /translation="MRIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRY AAANNLSVIGATKEDKQRISEILQETWESADDWFVSE" gene complement(1121561..1122607) /gene="pyrC" /locus_tag="b1062" /gene_synonym="ECK1047; JW1049" /db_xref="EcoGene:EG10806" /db_xref="GeneID:945787" CDS complement(1121561..1122607) /gene="pyrC" /locus_tag="b1062" /gene_synonym="ECK1047; JW1049" /EC_number="3.5.2.3" /function="enzyme; Pyrimidine ribonucleotide biosynthesis" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006221 - pyrimidine nucleotide biosynthetic process" /codon_start=1 /transl_table=11 /product="dihydro-orotase" /protein_id="NP_415580.1" /db_xref="GI:16129025" /db_xref="ASAP:ABE-0003607" /db_xref="UniProtKB/Swiss-Prot:P05020" /db_xref="EcoGene:EG10806" /db_xref="GeneID:945787" /translation="MTAPSQVLKIRRPDDWHLHLRDGDMLKTVVPYTSEIYGRAIVMP NLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCYLTDSLDPNELERGFNEGVFTAA KLYPANATTNSSHGVTSIDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREARFIES VMEPLRQRLTALKVVFEHITTKDAADYVRDGNERLAATITPQHLMFNRNHMLVGGVRP HLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAPTAL GSYATVFEEMNALQHFEAFCSVNGPQFYGLPVNDTFIELVREEQQVAESIALTDDTLV PFLAGETVRWSVKQ" gene complement(1122713..1123273) /gene="yceB" /locus_tag="b1063" /gene_synonym="ECK1048; JW1050" /db_xref="EcoGene:EG11117" /db_xref="GeneID:947377" CDS complement(1122713..1123273) /gene="yceB" /locus_tag="b1063" /gene_synonym="ECK1048; JW1050" /codon_start=1 /transl_table=11 /product="lipoprotein, DUF1439 family" /protein_id="NP_415581.1" /db_xref="GI:16129026" /db_xref="ASAP:ABE-0003611" /db_xref="UniProtKB/Swiss-Prot:P0AB26" /db_xref="EcoGene:EG11117" /db_xref="GeneID:947377" /translation="MNKFLFAAALIVSGLLVGCNQLTQYTITEQEINQSLAKHNNFSK DIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALP VFDKEKGAIFLKEMEVVDATVQPEKMQTVMQTLLPYLNQALRNYFNQQPAYVLREDGS QGEAMAKKLAKGIEVKPGEIVIPFTD" gene complement(1123407..1124054) /gene="grxB" /locus_tag="b1064" /gene_synonym="ECK1049; JW1051" /db_xref="EcoGene:EG12688" /db_xref="GeneID:946926" CDS complement(1123407..1124054) /gene="grxB" /locus_tag="b1064" /gene_synonym="ECK1049; JW1051" /function="carrier; Biosynthesis of cofactors, carriers: Thioredoxin, glutaredoxin, glutathione" /experiment="N-terminus verified by Edman degradation: PMID 7937896" /note="glutaredoxin 2" /codon_start=1 /transl_table=11 /product="glutaredoxin 2 (Grx2)" /protein_id="NP_415582.1" /db_xref="GI:16129027" /db_xref="ASAP:ABE-0003615" /db_xref="UniProtKB/Swiss-Prot:P0AC59" /db_xref="EcoGene:EG12688" /db_xref="GeneID:946926" /translation="MKLYIYDHCPYCLKARMIFGLKNIPVELHVLLNDDAETPTRMVG QKQVPILQKDDSRYMPESMDIVHYVDKLDGKPLLTGKRSPAIEEWLRKVNGYANKLLL PRFAKSAFDEFSTPAARKYFVDKKEASAGNFADLLAHSDGLIKNISDDLRALDKLIVK PNAVNGELSEDDIQLFPLLRNLTLVAGINWPSRVADYRDNMAKQTQINLLSSMAI" gene complement(1124118..1125326) /gene="mdtH" /locus_tag="b1065" /gene_synonym="ECK1050; JW1052; yceL" /db_xref="EcoGene:EG13878" /db_xref="GeneID:946920" CDS complement(1124118..1125326) /gene="mdtH" /locus_tag="b1065" /gene_synonym="ECK1050; JW1052; yceL" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="multidrug resistance efflux transporter conferring overexpression resistance to norfloxacin and enoxacin" /protein_id="NP_415583.4" /db_xref="GI:90111209" /db_xref="ASAP:ABE-0003618" /db_xref="UniProtKB/Swiss-Prot:P69367" /db_xref="EcoGene:EG13878" /db_xref="GeneID:946920" /translation="MSRVSQARNLGKYFLLIDNMLVVLGFFVVFPLISIRFVDQMGWA AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMGIAHEPWLL WFSCLLSGLGGTLFDPPRSALVVKLIRPQQRGRFFSLLMMQDSAGAVIGALLGSWLLQ YDFRLVCATGAVLFVLCAAFNAWLLPAWKLSTVRTPVREGMTRVMRDKRFVTYVLTLA GYYMLAVQVMLMLPIMVNDVAGAPSAVKWMYAIEACLSLTLLYPIARWSEKHFRLEHR LMAGLLIMSLSMMPVGMVSGLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSY MGFSRLGLAIGGAIGYIGGGWLFDLGKSAHQPELPWMMLGIIGIFTFLALGWQFSQKR AARRLLERDA" gene 1125562..1126146 /gene="rimJ" /locus_tag="b1066" /gene_synonym="ECK1051; JW1053; tcp" /db_xref="EcoGene:EG10851" /db_xref="GeneID:946910" CDS 1125562..1126146 /gene="rimJ" /locus_tag="b1066" /gene_synonym="ECK1051; JW1053; tcp" /EC_number="2.3.1.128" /function="enzyme; Ribosomes - maturation and modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006464 - protein modification process" /note="acetylation of N-terminal alanine of 30S ribosomal subunit protein S5" /codon_start=1 /transl_table=11 /product="ribosomal-protein-S5-alanine N-acetyltransferase" /protein_id="NP_415584.1" /db_xref="GI:16129029" /db_xref="ASAP:ABE-0003622" /db_xref="UniProtKB/Swiss-Prot:P0A948" /db_xref="EcoGene:EG10851" /db_xref="GeneID:946910" /translation="MFGYRSNVPKVRLTTDRLVVRLVHDRDAWRLADYYAENRHFLKP WEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFGLFDPDEKEIIGVANFSNVVRGSF HACYLGYSIGQKWQGKGLMFEALTAAIRYMQRTQHIHRIMANYMPHNKRSGDLLARLG FEKEGYAKDYLLIDGQWRDHVLTALTTPDWTPGR" gene 1126157..1126804 /gene="yceH" /locus_tag="b1067" /gene_synonym="ECK1052; JW1054" /db_xref="EcoGene:EG11537" /db_xref="GeneID:945633" CDS 1126157..1126804 /gene="yceH" /locus_tag="b1067" /gene_synonym="ECK1052; JW1054" /codon_start=1 /transl_table=11 /product="UPF0502 family protein" /protein_id="NP_415585.1" /db_xref="GI:16129030" /db_xref="ASAP:ABE-0003625" /db_xref="UniProtKB/Swiss-Prot:P29217" /db_xref="EcoGene:EG11537" /db_xref="GeneID:945633" /translation="MKYQLTALEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNR EPVMNLSESEVQEQLDNLVKRHYLRTVSGFGNRVTKYEQRFCNSEFGDLKLSAAEVAL ITTLLLRGAQTPGELRSRAARMYEFSDMAEVESTLEQLANREDGPFVVRLAREPGKRE NRYMHLFSGEVEDQPAVTDMSNAVDGDLQARVEALEIEVAELKQRLDSLLAHLGD" gene 1126806..1127729 /gene="yceM" /locus_tag="b1068" /gene_synonym="ECK1053; JW1055; mviM; mviS" /db_xref="EcoGene:EG13879" /db_xref="GeneID:945204" CDS 1126806..1127729 /gene="yceM" /locus_tag="b1068" /gene_synonym="ECK1053; JW1055; mviM; mviS" /function="putative factor; Not classified" /note="putative virulence factor" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_415586.1" /db_xref="GI:16129031" /db_xref="ASAP:ABE-0003627" /db_xref="UniProtKB/Swiss-Prot:P75931" /db_xref="EcoGene:EG13879" /db_xref="GeneID:945204" /translation="MKKLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALP ICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRD AERLVELAARKKLTLMVGFNRRFAPLYGELKTQLATAASLRMDKHRSNSVGPHDLYFT LLDDYLHVVDTALWLSGGKASLDGGTLLTNDAGEMLFAEHHFSAGPLQITTCMHRRAG SQRETVQAVTDGALIDITDMREWREERGQGVVHKPIPGWQSTLEQRGFVGCARHFIEC VQNQTVPQTAGEQAVLAQRIVDKIWRDAMSE" gene 1127839..1129374 /gene="murJ" /locus_tag="b1069" /gene_synonym="ECK1054; JW1056; mviN; mviS; yceN" /db_xref="EcoGene:EG13880" /db_xref="GeneID:945487" CDS 1127839..1129374 /gene="murJ" /locus_tag="b1069" /gene_synonym="ECK1054; JW1056; mviN; mviS; yceN" /function="putative factor; Not classified" /note="putative virulence factor" /codon_start=1 /transl_table=11 /product="putative lipid II flippase" /protein_id="NP_415587.1" /db_xref="GI:16129032" /db_xref="ASAP:ABE-0003630" /db_xref="UniProtKB/Swiss-Prot:P0AF16" /db_xref="EcoGene:EG13880" /db_xref="GeneID:945487" /translation="MNLLKSLAAVSSMTMFSRVLGFARDAIVARIFGAGMATDAFFVA FKLPNLLRRIFAEGAFSQAFVPILAEYKSKQGEDATRVFVSYVSGLLTLALAVVTVAG MLAAPWVIMVTAPGFADTADKFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIP AFAPTLLNISMIGFALFAAPYFNPPVLALAWAVTVGGVLQLVYQLPHLKKIGMLVLPR INFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFASFLASGSVSWMYYADRLMEFPS GVLGVALGTILLPSLSKSFASGNHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTV SLFQYGKFTAFDALMTQRALIAYSVGLIGLIVVKVLAPGFYSRQDIKTPVKIAIVTLI LTQLMNLAFIGPLKHAGLSLSIGLAACLNASLLYWQLRKQKIFTPQPGWMAFLLRLVV AVLVMSGVLLGMLHIMPEWSLGTMPWRLLRLMAVVLAGIAAYFAALAVLGFKVKEFAR RTV" gene complement(1129414..1129830) /gene="flgN" /locus_tag="b1070" /gene_synonym="ECK1055; JW1057" /db_xref="EcoGene:EG12665" /db_xref="GeneID:945634" CDS complement(1129414..1129830) /gene="flgN" /locus_tag="b1070" /gene_synonym="ECK1055; JW1057" /function="phenotype; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0006457 - protein folding; GO:0042330 - taxis" /note="protein of flagellar biosynthesis" /codon_start=1 /transl_table=11 /product="export chaperone for FlgK and FlgL" /protein_id="NP_415588.1" /db_xref="GI:16129033" /db_xref="ASAP:ABE-0003632" /db_xref="UniProtKB/Swiss-Prot:P43533" /db_xref="EcoGene:EG12665" /db_xref="GeneID:945634" /translation="MTRLAEILDQMSAVLNDLKTVMDQEQQHLSMGQINGSQLQWITE QKSSLLATLDYLEQLRRKEPNTANSVDISQRWQEITVKTQQLRQMNQHNGWLLEGQIE RNQQALEMLKPHQEPTLYGANGQTSTTHRGGKKISI" gene complement(1129835..1130128) /gene="flgM" /locus_tag="b1071" /gene_synonym="ECK1056; JW1058; mviS" /db_xref="EcoGene:EG12664" /db_xref="GeneID:946684" CDS complement(1129835..1130128) /gene="flgM" /locus_tag="b1071" /gene_synonym="ECK1056; JW1058; mviS" /function="factor; Surface structures" /GO_component="GO:0005737 - cytoplasm; GO:0019861 - flagellum" /GO_process="GO:0042330 - taxis; GO:0006350 - transcription" /note="anti-FliA (anti-sigma) factor; also known as RflB protein" /codon_start=1 /transl_table=11 /product="anti-sigma factor for FliA (sigma 28)" /protein_id="NP_415589.1" /db_xref="GI:16129034" /db_xref="ASAP:ABE-0003634" /db_xref="UniProtKB/Swiss-Prot:P0AEM4" /db_xref="EcoGene:EG12664" /db_xref="GeneID:946684" /translation="MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLS DAQAKLMQPGSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN" gene complement(1130204..1130863) /gene="flgA" /locus_tag="b1072" /gene_synonym="ECK1057; flaU; JW1059" /db_xref="EcoGene:EG20263" /db_xref="GeneID:946300" CDS complement(1130204..1130863) /gene="flgA" /locus_tag="b1072" /gene_synonym="ECK1057; flaU; JW1059" /function="putative structure; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis; assembly of basal-body periplasmic P ring" /codon_start=1 /transl_table=11 /product="assembly protein for flagellar basal-body periplasmic P ring" /protein_id="NP_415590.1" /db_xref="GI:16129035" /db_xref="ASAP:ABE-0003637" /db_xref="UniProtKB/Swiss-Prot:P75933" /db_xref="EcoGene:EG20263" /db_xref="GeneID:946300" /translation="MLIIKRSVAIIAILFSPLSTASNLTSQLHNFFSAQLAGVSDEVR VSIRTAPNLLPPCEQPLLSMSNNSRLWGNVNVLARCGNDKRYLQVNVQATGNYVVAAM PIARGGKLEAGNVKLKRGRLDTLPPRTVLDINQLVDAISLRDLSPDQPIQLTQFRQAW RVKAGQRVNVIASGDGFSANAEGQALNNAAVAQNARVRMVSGQVVSGVVDADGNILIN L" gene 1131018..1131434 /gene="flgB" /locus_tag="b1073" /gene_synonym="ECK1058; flbA; JW1060" /db_xref="EcoGene:EG14266" /db_xref="GeneID:945678" CDS 1131018..1131434 /gene="flgB" /locus_tag="b1073" /gene_synonym="ECK1058; flbA; JW1060" /function="structural component; Surface structures" /GO_component="GO:0019861 - flagellum; GO:0042597 - periplasmic space" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis, cell-proximal portion of basal-body rod" /codon_start=1 /transl_table=11 /product="flagellar component of cell-proximal portion of basal-body rod" /protein_id="NP_415591.1" /db_xref="GI:16129036" /db_xref="ASAP:ABE-0003641" /db_xref="UniProtKB/Swiss-Prot:P0ABW9" /db_xref="EcoGene:EG14266" /db_xref="GeneID:945678" /translation="MLDKLDAALRFQQEALNLRAQRQEVLAANIANADTPGYQARDID FASELKKVMQRGRDATSVVALTMTSTQHIPAQALTPPTAELQYRIPDQPSLDGNTVDM DRERTQFADNSLQYQMSLSALSGQIKGMMNVLQSGN" gene 1131438..1131842 /gene="flgC" /locus_tag="b1074" /gene_synonym="ECK1059; flaW; JW1061" /db_xref="EcoGene:EG14267" /db_xref="GeneID:946687" CDS 1131438..1131842 /gene="flgC" /locus_tag="b1074" /gene_synonym="ECK1059; flaW; JW1061" /function="structural component; Surface structures" /GO_component="GO:0019861 - flagellum; GO:0042597 - periplasmic space" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis, cell-proximal portion of basal-body rod" /codon_start=1 /transl_table=11 /product="flagellar component of cell-proximal portion of basal-body rod" /protein_id="NP_415592.1" /db_xref="GI:16129037" /db_xref="ASAP:ABE-0003643" /db_xref="UniProtKB/Swiss-Prot:P0ABX2" /db_xref="EcoGene:EG14267" /db_xref="GeneID:946687" /translation="MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRA KQVVFQVNAAPGAATGGVKVADVIESQAPDKLVYEPGNPLADAKGYVKMPNVDVVGEM VNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ" gene 1131854..1132549 /gene="flgD" /locus_tag="b1075" /gene_synonym="ECK1060; flaV; JW1062" /db_xref="EcoGene:EG14268" /db_xref="GeneID:945813" CDS 1131854..1132549 /gene="flgD" /locus_tag="b1075" /gene_synonym="ECK1060; flaV; JW1062" /function="putative structure; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis, initiation of hook assembly" /codon_start=1 /transl_table=11 /product="flagellar hook assembly protein" /protein_id="NP_415593.1" /db_xref="GI:16129038" /db_xref="ASAP:ABE-0003645" /db_xref="UniProtKB/Swiss-Prot:P75936" /db_xref="EcoGene:EG14268" /db_xref="GeneID:945813" /translation="MSIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLK NQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQASNLIGHGVMI PGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVH SFTWDGTLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQGVIRGNSGNTLDLGT YGTTTLDEVRQII" gene 1132574..1133782 /gene="flgE" /locus_tag="b1076" /gene_synonym="ECK1061; flaK; JW1063" /db_xref="EcoGene:EG14269" /db_xref="GeneID:945636" CDS 1132574..1133782 /gene="flgE" /locus_tag="b1076" /gene_synonym="ECK1061; flaK; JW1063" /function="structural component; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis, hook protein" /codon_start=1 /transl_table=11 /product="flagellar hook protein" /protein_id="NP_415594.1" /db_xref="GI:16129039" /db_xref="ASAP:ABE-0003647" /db_xref="UniProtKB/Swiss-Prot:P75937" /db_xref="EcoGene:EG14269" /db_xref="GeneID:945636" /translation="MAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFA GSKVGLGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKL DENRNLVNMQGLQLTGYPATGTPPTIQQGANPTNISIPNTLMAAKTTTTASMQINLNS SDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQVYTQDSSDP NSIAKTATTLEFNANGTLVDGAMANNIATGAINGAEPATFSLSFLNSMQQNTGANNIV ATTQNGYKPGDLVSYQINDDGTVVGNYSNEQTQLLGQIVLANFANNEGLASEGDNVWS ATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQD QILNTLVNLR" gene 1133802..1134557 /gene="flgF" /locus_tag="b1077" /gene_synonym="ECK1062; flaX; JW1064" /db_xref="EcoGene:EG14270" /db_xref="GeneID:945639" CDS 1133802..1134557 /gene="flgF" /locus_tag="b1077" /gene_synonym="ECK1062; flaX; JW1064" /function="structural component; Surface structures" /GO_component="GO:0019861 - flagellum; GO:0042597 - periplasmic space" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis, cell-proximal portion of basal-body rod" /codon_start=1 /transl_table=11 /product="flagellar component of cell-proximal portion of basal-body rod" /protein_id="NP_415595.1" /db_xref="GI:16129040" /db_xref="ASAP:ABE-0003649" /db_xref="UniProtKB/Swiss-Prot:P75938" /db_xref="EcoGene:EG14270" /db_xref="GeneID:945639" /translation="MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV PVEGLSLPTRTLVTASTPGADMTPGKMDYTSRPLDVALQQDGWLAVQTADGSEGYTRN GSIQVDPTGQLTIQGHPVIGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVGR LKLVKATGSEVQRGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMS DMIASARRFEMQMKVISSVDDNAGRANQLLSMS" repeat_region 1134586..1134683 /note="RIP100 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene 1134729..1135511 /gene="flgG" /locus_tag="b1078" /gene_synonym="ECK1063; flaL; JW1065" /db_xref="EcoGene:EG14271" /db_xref="GeneID:945647" CDS 1134729..1135511 /gene="flgG" /locus_tag="b1078" /gene_synonym="ECK1063; flaL; JW1065" /function="structural component; Surface structures" /GO_component="GO:0019861 - flagellum; GO:0042597 - periplasmic space" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis, cell-distal portion of basal-body rod" /codon_start=1 /transl_table=11 /product="flagellar component of cell-distal portion of basal-body rod" /protein_id="NP_415596.1" /db_xref="GI:16129041" /db_xref="ASAP:ABE-0003652" /db_xref="UniProtKB/Swiss-Prot:P0ABX5" /db_xref="EcoGene:EG14271" /db_xref="GeneID:945647" /translation="MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDL LYQTIRQPGAQSSEQTTLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGF FQVMLPDGSSAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVT QQGQAAPVQVGQLNLTTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGLLYQGY VETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQL" gene 1135564..1136262 /gene="flgH" /locus_tag="b1079" /gene_synonym="ECK1064; flaY; JW5153" /db_xref="EcoGene:EG20264" /db_xref="GeneID:946996" CDS 1135564..1136262 /gene="flgH" /locus_tag="b1079" /gene_synonym="ECK1064; flaY; JW5153" /function="structural component; Surface structures" /GO_component="GO:0009279 - cell outer membrane; GO:0019861 - flagellum; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis, basal-body outer-membrane L (lipopolysaccharide layer) ring protein" /codon_start=1 /transl_table=11 /product="flagellar protein of basal-body outer-membrane L ring" /protein_id="NP_415597.1" /db_xref="GI:16129042" /db_xref="ASAP:ABE-0003654" /db_xref="UniProtKB/Swiss-Prot:P0A6S0" /db_xref="EcoGene:EG20264" /db_xref="GeneID:946996" /translation="MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPT PVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKT NFGFDTVPRYLQGLFGNARADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGN LHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN MGWLQRFFLNLSPM" gene 1136274..1137371 /gene="flgI" /locus_tag="b1080" /gene_synonym="ECK1065; flaM; JW1067" /db_xref="EcoGene:EG20265" /db_xref="GeneID:947534" CDS 1136274..1137371 /gene="flgI" /locus_tag="b1080" /gene_synonym="ECK1065; flaM; JW1067" /function="putative structural component; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="homolog of Salmonella P-ring of flagella basal body" /codon_start=1 /transl_table=11 /product="putative flagellar basal body protein" /protein_id="NP_415598.3" /db_xref="GI:49176076" /db_xref="ASAP:ABE-0003656" /db_xref="UniProtKB/Swiss-Prot:P0A6S3" /db_xref="EcoGene:EG20265" /db_xref="GeneID:947534" /translation="MIKFLSALILLLVTTAAQAERIRDLTSVQGVRQNSLIGYGLVVG LDGTGDQTTQTPFTTQTLNNMLSQLGITVPTGTNMQLKNVAAVMVTASLPPFGRQGQT IDVVVSSMGNAKSLRGGTLLMTPLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQL NGGRITNGAVIERELPSQFGVGNTLNLQLNDEDFSMAQQIADTINRVRGYGSATALDA RTIQVRVPSGNSSQVRFLADIQNMQVNVTPQDAKVVINSRTGSVVMNREVTLDSCAVA QGNLSVTVNRQANVSQPDTPFGGGQTVVTPQTQIDLRQSGGSLQSVRSSASLNNVVRA LNALGATPMDLMSILQSMQSAGCLRAKLEII" gene 1137371..1138312 /gene="flgJ" /locus_tag="b1081" /gene_synonym="ECK1066; flaZ; JW1068" /db_xref="EcoGene:EG14272" /db_xref="GeneID:947456" CDS 1137371..1138312 /gene="flgJ" /locus_tag="b1081" /gene_synonym="ECK1066; flaZ; JW1068" /function="structure; Surface structures; enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis" /codon_start=1 /transl_table=11 /product="flagellar rod assembly protein and murein hydrolase; flagellum-specific muramidase" /protein_id="NP_415599.1" /db_xref="GI:16129044" /db_xref="ASAP:ABE-0003658" /db_xref="UniProtKB/Swiss-Prot:P75942" /db_xref="EcoGene:EG14272" /db_xref="GeneID:947456" /translation="MISDSKLLASAAWDAQSLNELKAKAGEDPAANIRPVARQVEGMF VQMMLKSMRDALPKDGLFSSEHTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQ PLPEESTPAAPMKFPLETVVRYQNQALSQLVQKAVPRNYDDSLPGDSKAFLAQLSLPA QLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGPVTEITT TEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQALQDAG YATDPHYARKLTNMIQQMKSISDKVSKTYSMNIDNLF" gene 1138378..1140021 /gene="flgK" /locus_tag="b1082" /gene_synonym="ECK1067; flaS; JW1069" /db_xref="EcoGene:EG11967" /db_xref="GeneID:945648" CDS 1138378..1140021 /gene="flgK" /locus_tag="b1082" /gene_synonym="ECK1067; flaS; JW1069" /function="structural component; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0006457 - protein folding; GO:0042330 - taxis" /note="flagellar biosynthesis, hook-filament junction protein 1" /codon_start=1 /transl_table=11 /product="flagellar hook-filament junction protein 1" /protein_id="NP_415600.1" /db_xref="GI:16129045" /db_xref="ASAP:ABE-0003660" /db_xref="UniProtKB/Swiss-Prot:P33235" /db_xref="EcoGene:EG11967" /db_xref="GeneID:945648" /translation="MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQA NSTLGAGGWVGNGVYVSGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTS TSSLATQMQDFFTSLQTLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNI AIGASVDQINNYAKQIASLNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVS VQDGGTYNITMANGYSLVQGSTARQLAAVPSSADPSRTTVAYVDGTAGNIEIPEKLLN TGSLGGILTFRSQDLDQTRNTLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPA VLQNTKNKGDVAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKV AFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEEDAGDSDNRNGQ ALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSIS GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR" gene 1140033..1140986 /gene="flgL" /locus_tag="b1083" /gene_synonym="ECK1068; flaT; JW1070" /db_xref="EcoGene:EG11545" /db_xref="GeneID:945646" CDS 1140033..1140986 /gene="flgL" /locus_tag="b1083" /gene_synonym="ECK1068; flaT; JW1070" /function="structural component; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0006457 - protein folding; GO:0042330 - taxis" /note="flagellar biosynthesis; hook-filament junction protein" /codon_start=1 /transl_table=11 /product="flagellar hook-filament junction protein" /protein_id="NP_415601.1" /db_xref="GI:16129046" /db_xref="ASAP:ABE-0003666" /db_xref="UniProtKB/Swiss-Prot:P29744" /db_xref="EcoGene:EG11545" /db_xref="GeneID:945646" /translation="MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPI AASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTL SDDDRASLATDIQGLRDQLLNLANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESI KQQVDASRSMVIGHTGDKIFDSITSNAVAEPDGSASETNLFAMLDSAIAALKTPVADS EADKETAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMS DLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSLFQLSK" gene complement(1141182..1144367) /gene="rne" /locus_tag="b1084" /gene_synonym="ams; ECK1069; hmp1; JW1071; smbB" /db_xref="EcoGene:EG10859" /db_xref="GeneID:945641" CDS complement(1141182..1144367) /gene="rne" /locus_tag="b1084" /gene_synonym="ams; ECK1069; hmp1; JW1071; smbB" /EC_number="3.1.4.-" /function="enzyme; Degradation of RNA" /experiment="N-terminus verified by Edman degradation: PMID 2011493" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006401 - RNA catabolic process" /note="RNase E, membrane attachment, mRNA turnover, maturation 5S RNA" /codon_start=1 /transl_table=11 /product="endoribonuclease; RNA-binding protein;RNA degradosome binding protein" /protein_id="NP_415602.1" /db_xref="GI:16129047" /db_xref="ASAP:ABE-0003668" /db_xref="UniProtKB/Swiss-Prot:P21513" /db_xref="EcoGene:EG10859" /db_xref="GeneID:945641" /translation="MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKG KITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIV QIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLEL PEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAF RDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIE SAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQL RLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRL SPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASY LLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEE AMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPA QPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRD TRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRR RNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAV VAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRS RRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQV EEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTH PEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPE VVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQR PTFAFEGKGAAGGHTATHHASAAPARPQPVE" gene 1144502..1144822 /gene="yceQ" /locus_tag="b1085" /gene_synonym="ECK1070; JW5154" /db_xref="EcoGene:EG14413" /db_xref="GeneID:945640" CDS 1144502..1144822 /gene="yceQ" /locus_tag="b1085" /gene_synonym="ECK1070; JW5154" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_415603.2" /db_xref="GI:90111210" /db_xref="ASAP:ABE-0003672" /db_xref="UniProtKB/Swiss-Prot:P62066" /db_xref="EcoGene:EG14413" /db_xref="GeneID:945640" /translation="MSVARFSCGKTAQLSKKQTGYYSPEIFPSTGKDCNPQPANCLKD QYVLRHCCVDDRSGKMGYSVKFLVLTRMDTETASLFHCKPCYSKMTFTIYHPLTHSFF TSCW" gene 1144940..1145899 /gene="rluC" /locus_tag="b1086" /gene_synonym="ECK1071; JW1072; yceC" /db_xref="EcoGene:EG11118" /db_xref="GeneID:945637" CDS 1144940..1145899 /gene="rluC" /locus_tag="b1086" /gene_synonym="ECK1071; JW1072; yceC" /EC_number="4.2.1.70" /function="enzyme; rRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="23S rRNA pseudouridine(955,2504,2580) synthase" /protein_id="NP_415604.1" /db_xref="GI:16129049" /db_xref="ASAP:ABE-0003675" /db_xref="UniProtKB/Swiss-Prot:P0AA39" /db_xref="EcoGene:EG11118" /db_xref="GeneID:945637" /translation="MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRK GEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHI LVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSAL RSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSET RFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG LNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR" repeat_region 1145928..1146002 /note="REP101 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(1146011..1146595) /gene="yceF" /locus_tag="b1087" /gene_synonym="ECK1072; JW5155" /db_xref="EcoGene:EG11438" /db_xref="GeneID:945631" CDS complement(1146011..1146595) /gene="yceF" /locus_tag="b1087" /gene_synonym="ECK1072; JW5155" /codon_start=1 /transl_table=11 /product="m(7)GTP pyrophosphatase" /protein_id="NP_415605.2" /db_xref="GI:90111211" /db_xref="ASAP:ABE-0003678" /db_xref="UniProtKB/Swiss-Prot:P0A729" /db_xref="EcoGene:EG11438" /db_xref="GeneID:945631" /translation="MPKLILASTSPWRRALLEKLQISFECAAPEVDETPRSDESPRQL VLRLAQEKAQSLASRYPDHLIIGSDQVCVLDGEITGKPLTEENARLQLRKASGNIVTF YTGLALFNSANGHLQTEVEPFDVHFRHLSEAEIDNYVRKEHPLHCAGSFKSEGFGITL FERLEGRDPNTLVGLPLIALCQMLRREGKNPLMG" gene 1146589..1146757 /gene="psrD" /locus_tag="b4418" /gene_synonym="ECK1073; JWR0228; pke20; psrA4; sraB" /db_xref="EcoGene:EG31138" /db_xref="GeneID:2847755" ncRNA 1146589..1146757 /ncRNA_class="other" /gene="psrD" /locus_tag="b4418" /gene_synonym="ECK1073; JWR0228; pke20; psrA4; sraB" /product="novel Novel sRNA, function unknown" /note="identified in a large scale screen" /db_xref="ASAP:ABE-0047242" /db_xref="EcoGene:EG31138" /db_xref="GeneID:2847755" gene 1146794..1147315 /gene="yceD" /locus_tag="b1088" /gene_synonym="ECK1074; JW1074" /db_xref="EcoGene:EG11119" /db_xref="GeneID:945650" CDS 1146794..1147315 /gene="yceD" /locus_tag="b1088" /gene_synonym="ECK1074; JW1074" /codon_start=1 /transl_table=11 /product="DUF177 family protein" /protein_id="NP_415606.1" /db_xref="GI:16129051" /db_xref="ASAP:ABE-0003684" /db_xref="UniProtKB/Swiss-Prot:P0AB28" /db_xref="EcoGene:EG11119" /db_xref="GeneID:945650" /translation="MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSD VECSMSFAIDNQRLAVLNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEAL PEAYEPIEVNEFGEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEAQK PNPFAVLASLKRK" gene 1147367..1147540 /gene="rpmF" /locus_tag="b1089" /gene_synonym="ECK1075; JW1075" /db_xref="EcoGene:EG10890" /db_xref="GeneID:945657" CDS 1147367..1147540 /gene="rpmF" /locus_tag="b1089" /gene_synonym="ECK1075; JW1075" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L32" /protein_id="NP_415607.1" /db_xref="GI:16129052" /db_xref="ASAP:ABE-0003686" /db_xref="UniProtKB/Swiss-Prot:P0A7N4" /db_xref="EcoGene:EG10890" /db_xref="GeneID:945657" /translation="MAVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHIT ADGYYRGRKVIAK" gene 1147621..1148691 /gene="plsX" /locus_tag="b1090" /gene_synonym="ECK1076; JW5156" /db_xref="EcoGene:EG11437" /db_xref="GeneID:946165" CDS 1147621..1148691 /gene="plsX" /locus_tag="b1090" /gene_synonym="ECK1076; JW5156" /function="phenotype; Macromolecule synthesis, modification: Phospholipids" /GO_process="GO:0008654 - phospholipid biosynthetic process" /note="glycerolphosphate auxotrophy in plsB background" /codon_start=1 /transl_table=11 /product="putative phosphate acyltransferase" /protein_id="NP_415608.2" /db_xref="GI:90111212" /db_xref="ASAP:ABE-0003692" /db_xref="UniProtKB/Swiss-Prot:P27247" /db_xref="EcoGene:EG11437" /db_xref="GeneID:946165" /translation="MTRLTLALDVMGGDFGPSVTVPAALQALNSNSQLTLLLVGNSDA ITPLLAKADFEQRSRLQIIPAQSVIASDARPSQAIRASRGSSMRVALELVKEGRAQAC VSAGNTGALMGLAKLLLKPLEGIERPALVTVLPHQQKGKTVVLDLGANVDCDSTMLVQ FAIMGSVLAEEVVEIPNPRVALLNIGEEEVKGLDSIRDASAVLKTIPSINYIGYLEAN ELLTGKTDVLVCDGFTGNVTLKTMEGVVRMFLSLLKSQGEGKKRSWWLLLLKRWLQKS LTRRFSHLNPDQYNGACLLGLRGTVIKSHGAANQRAFAVAIEQAVQAVQRQVPQRIAA RLESVYPAGFELLDGGKSGTLR" gene 1148759..1149712 /gene="fabH" /locus_tag="b1091" /gene_synonym="ECK1077; JW1077" /db_xref="EcoGene:EG10277" /db_xref="GeneID:946003" CDS 1148759..1149712 /gene="fabH" /locus_tag="b1091" /gene_synonym="ECK1077; JW1077" /EC_number="2.3.1.41" /function="enzyme; Fatty acid and phosphatidic acid biosynthesis" /experiment="N-terminus verified by Edman degradation: PMID 1551888" /GO_component="GO:0005737 - cytoplasm" /note="3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase" /codon_start=1 /transl_table=11 /product="3-oxoacyl-[acyl-carrier-protein] synthase III" /protein_id="NP_415609.1" /db_xref="GI:16129054" /db_xref="ASAP:ABE-0003696" /db_xref="UniProtKB/Swiss-Prot:P0A6R0" /db_xref="EcoGene:EG10277" /db_xref="GeneID:946003" /translation="MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHI AAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG CPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDG AGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVT ELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTS AASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF" gene 1149728..1150657 /gene="fabD" /locus_tag="b1092" /gene_synonym="ECK1078; JW1078; tfpA" /db_xref="EcoGene:EG11317" /db_xref="GeneID:945766" CDS 1149728..1150657 /gene="fabD" /locus_tag="b1092" /gene_synonym="ECK1078; JW1078; tfpA" /EC_number="2.3.1.39" /function="enzyme; Fatty acid and phosphatidic acid biosynthesis" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="malonyl-CoA-[acyl-carrier-protein] transacylase" /protein_id="NP_415610.1" /db_xref="GI:16129055" /db_xref="ASAP:ABE-0003698" /db_xref="UniProtKB/Swiss-Prot:P0AAI9" /db_xref="EcoGene:EG11317" /db_xref="GeneID:945766" /translation="MTQFAFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDL WALTQQGPAEELNKTWQTQPALLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCA GVIDFADAVRLVEMRGKFMQEAVPEGTGAMAAIIGLDDASIAKACEEAAEGQVVSPVN FNSPGQVVIAGHKEAVERAGAACKAAGAKRALPLPVSVPSHCALMKPAADKLAVELAK ITFNAPTVPVVNNVDVKCETNGDAIRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVG PGKVLTGLTKRIVDTLTASALNEPSAMAAALEL" gene 1150670..1151404 /gene="fabG" /locus_tag="b1093" /gene_synonym="ECK1079; JW1079" /db_xref="EcoGene:EG11318" /db_xref="GeneID:945645" CDS 1150670..1151404 /gene="fabG" /locus_tag="b1093" /gene_synonym="ECK1079; JW1079" /EC_number="1.1.1.100" /function="enzyme; Fatty acid and phosphatidic acid biosynthesis" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="3-oxoacyl-[acyl-carrier-protein] reductase" /protein_id="NP_415611.1" /db_xref="GI:16129056" /db_xref="ASAP:ABE-0003700" /db_xref="UniProtKB/Swiss-Prot:P0AEK2" /db_xref="EcoGene:EG11318" /db_xref="GeneID:945645" /translation="MNFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQA ISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEE WNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIG FSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIANA VAFLASDEAAYITGETLHVNGGMYMV" gene 1151615..1151851 /gene="acpP" /locus_tag="b1094" /gene_synonym="ECK1080; JW1080" /db_xref="EcoGene:EG50003" /db_xref="GeneID:944805" CDS 1151615..1151851 /gene="acpP" /locus_tag="b1094" /gene_synonym="ECK1080; JW1080" /function="carrier; Fatty acid and phosphatidic acid biosynthesis" /GO_process="GO:0042967 - acyl-carrier-protein biosynthetic process" /note="acyl carrier protein" /codon_start=1 /transl_table=11 /product="acyl carrier protein (ACP)" /protein_id="NP_415612.1" /db_xref="GI:16129057" /db_xref="ASAP:ABE-0003703" /db_xref="UniProtKB/Swiss-Prot:P0A6A8" /db_xref="EcoGene:EG50003" /db_xref="GeneID:944805" /translation="MSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELV MALEEEFDTEIPDEEAEKITTVQAAIDYINGHQA" gene 1151939..1153180 /gene="fabF" /locus_tag="b1095" /gene_synonym="cvc; ECK1081; fabJ; JW1081; vtr" /db_xref="EcoGene:EG12606" /db_xref="GeneID:946665" CDS 1151939..1153180 /gene="fabF" /locus_tag="b1095" /gene_synonym="cvc; ECK1081; fabJ; JW1081; vtr" /EC_number="2.3.1.41" /function="enzyme; Fatty acid and phosphatidic acid biosynthesis" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="3-oxoacyl-[acyl-carrier-protein] synthase II" /protein_id="NP_415613.1" /db_xref="GI:16129058" /db_xref="ASAP:ABE-0003705" /db_xref="UniProtKB/Swiss-Prot:P0AAI5" /db_xref="EcoGene:EG12606" /db_xref="GeneID:946665" /translation="MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTS AYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIG AAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISI ATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQA ASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPEN GAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSS TKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGME YTLCNSFGFGGTNGSLIFKKI" gene 1153300..1154109 /gene="pabC" /locus_tag="b1096" /gene_synonym="ECK1082; JW1082" /db_xref="EcoGene:EG11493" /db_xref="GeneID:946647" CDS 1153300..1154109 /gene="pabC" /locus_tag="b1096" /gene_synonym="ECK1082; JW1082" /EC_number="4.1.3.38" /function="enzyme; Biosynthesis of cofactors, carriers: Folic acid" /experiment="N-terminus verified by Edman degradation: PMID 1644759,2071583" /GO_process="GO:0046656 - folic acid biosynthetic process" /note="4-amino-4-deoxychorismate lyase" /codon_start=1 /transl_table=11 /product="4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex" /protein_id="NP_415614.1" /db_xref="GI:16129059" /db_xref="ASAP:ABE-0003709" /db_xref="UniProtKB/Swiss-Prot:P28305" /db_xref="EcoGene:EG11493" /db_xref="GeneID:946647" /translation="MFLINGHKQESLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQ RLQDACQRLMISCDFWPQLEQEMKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATR ILSVTAYPAHYDRLRNEGITLALSPVRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNAD EALVLDSEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVE VQASLEESLQADEMVICNALMPVMPVCACGDVSFSSATLYEYLAPLCERPN" gene 1154112..1155134 /gene="yceG" /locus_tag="b1097" /gene_synonym="ECK1083; JW1083" /db_xref="EcoGene:EG11494" /db_xref="GeneID:945660" CDS 1154112..1155134 /gene="yceG" /locus_tag="b1097" /gene_synonym="ECK1083; JW1083" /function="putative enzyme; Not classified" /note="putative thymidylate kinase" /codon_start=1 /transl_table=11 /product="septation protein, ampicillin sensitivity" /protein_id="NP_415615.1" /db_xref="GI:16129060" /db_xref="ASAP:ABE-0003712" /db_xref="UniProtKB/Swiss-Prot:P28306" /db_xref="EcoGene:EG11494" /db_xref="GeneID:945660" /translation="MKKVLLIILLLLVVLGIAAGVGVWKVRHLADSKLLIKEETIFTL KPGTGRLALGEQLYADKIINRPRVFQWLLRIEPDLSHFKAGTYRFTPQMTVREMLKLL ESGKEAQFPLRLVEGMRLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGW FWPDTWMYTANTTDVALLKRAHKKMVKAVDSAWEGRADGLPYKDKNQLVTMASIIEKE TAVASERDKVASVFINRLRIGMRLQTDPTVIYGMGERYNGKLSRADLETPTAYNTYTI TGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVL KEKNAQ" gene 1155124..1155765 /gene="tmk" /locus_tag="b1098" /gene_synonym="ECK1084; JW1084; ycfG" /db_xref="EcoGene:EG12302" /db_xref="GeneID:945663" CDS 1155124..1155765 /gene="tmk" /locus_tag="b1098" /gene_synonym="ECK1084; JW1084; ycfG" /EC_number="2.7.4.9" /function="enzyme; 2'-Deoxyribonucleotide metabolism" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="thymidylate kinase" /protein_id="NP_415616.1" /db_xref="GI:16129061" /db_xref="ASAP:ABE-0003714" /db_xref="UniProtKB/Swiss-Prot:P0A720" /db_xref="EcoGene:EG12302" /db_xref="GeneID:945663" /translation="MRSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGT QLAEKLRSLVLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHD LSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIE QESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKELDA" gene 1155762..1156766 /gene="holB" /locus_tag="b1099" /gene_synonym="ECK1085; JW1085" /db_xref="EcoGene:EG11500" /db_xref="GeneID:945661" CDS 1155762..1156766 /gene="holB" /locus_tag="b1099" /gene_synonym="ECK1085; JW1085" /EC_number="2.7.7.7" /function="enzyme; DNA - replication, repair, restriction/modification" /experiment="N-terminus verified by Edman degradation: PMID 8505303" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication" /codon_start=1 /transl_table=11 /product="DNA polymerase III, delta prime subunit" /protein_id="NP_415617.1" /db_xref="GI:16129062" /db_xref="ASAP:ABE-0003716" /db_xref="UniProtKB/Swiss-Prot:P28631" /db_xref="EcoGene:EG11500" /db_xref="GeneID:945661" /translation="MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL SRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNE HARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR LHYLAPPPEQYAVTWLSREVTMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQ ALAYSVPSGDWYSLLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAE LANHLSPSRLQAILGDVCHIREQLMSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL " gene 1156777..1157574 /gene="ycfH" /locus_tag="b1100" /gene_synonym="ECK1086; JW1086" /db_xref="EcoGene:EG12303" /db_xref="GeneID:945656" CDS 1156777..1157574 /gene="ycfH" /locus_tag="b1100" /gene_synonym="ECK1086; JW1086" /codon_start=1 /transl_table=11 /product="putative DNase" /protein_id="NP_415618.1" /db_xref="GI:16129063" /db_xref="ASAP:ABE-0003719" /db_xref="UniProtKB/Swiss-Prot:P0AFQ7" /db_xref="EcoGene:EG12303" /db_xref="GeneID:945656" /translation="MFLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTL PGYLHMRDLVGERDNVVFSCGVHPLNQNDPYDVEDLRRLAAEEGVVALGETGLDYYYT PETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTED RETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKE NQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRLQSIR" gene 1157869..1159302 /gene="ptsG" /locus_tag="b1101" /gene_synonym="car; cat; CR; ECK1087; glcA; JW1087; tgl; umg; umgC" /db_xref="EcoGene:EG10787" /db_xref="GeneID:945651" CDS 1157869..1159302 /gene="ptsG" /locus_tag="b1101" /gene_synonym="car; cat; CR; ECK1087; glcA; JW1087; tgl; umg; umgC" /EC_number="2.7.1.69" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /experiment="N-terminus verified by Edman degradation: PMID 3023349" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006464 - protein modification process" /note="PTS system, glucose-specific IIBC component" /codon_start=1 /transl_table=11 /product="fused glucose-specific PTS enzymes: IIB component/IIC component" /protein_id="NP_415619.1" /db_xref="GI:16129064" /db_xref="ASAP:ABE-0003722" /db_xref="UniProtKB/Swiss-Prot:P69786" /db_xref="EcoGene:EG10787" /db_xref="GeneID:945651" /translation="MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVV SHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAAVVAYGIMVKTMAVVAPLVLH LPAEEIASKHLADTGVLGGIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLA AIFTGVVLSFIWPPIGSAIQTFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPF QMQIGEYTNAAGQVFHGDIPRYMAGDPTAGKLSGGFLFKMYGLPAAAIAIWHSAKPEN RAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDG TSFSHGLIDFIVLSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGREDATED AKATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVV AGSGVQAIFGTKSDNLKTEMDEYIRNH" gene complement(1159362..1161551) /gene="fhuE" /locus_tag="b1102" /gene_synonym="ECK1088; JW1088" /db_xref="EcoGene:EG10306" /db_xref="GeneID:945649" CDS complement(1159362..1161551) /gene="fhuE" /locus_tag="b1102" /gene_synonym="ECK1088; JW1088" /function="transport; Transport of small molecules: Cations" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006826 - iron ion transport" /note="outer membrane receptor for ferric iron uptake" /codon_start=1 /transl_table=11 /product="ferric-rhodotorulic acid outer membrane transporter" /protein_id="NP_415620.1" /db_xref="GI:16129065" /db_xref="ASAP:ABE-0003724" /db_xref="UniProtKB/Swiss-Prot:P16869" /db_xref="EcoGene:EG10306" /db_xref="GeneID:945649" /translation="MLSTQFNRDNQYQAITKPSLLAGCIALALLPSAAFAAPATEETV IVEGSATAPDDGENDYSVTSTSAGTKMQMTQRDIPQSVTIVSQQRMEDQQLQTLGEVM ENTLGISKSQADSDRALYYSRGFQIDNYMVDGIPTYFESRWNLGDALSDMALFERVEV VRGATGLMTGTGNPSAAINMVRKHATSREFKGDVSAEYGSWNKERYVADLQSPLTEDG KIRARIVGGYQNNDSWLDRYNSEKTFFSGIVDADLGDLTTLSAGYEYQRIDVNSPTWG GLPRWNTDGSSNSYDRARSTAPDWAYNDKEINKVFMTLKQQFADTWQATLNATHSEVE FDSKMMYVDAYVNKADGMLVGPYSNYGPGFDYVGGTGWNSGKRKVDALDLFADGSYEL FGRQHNLMFGGSYSKQNNRYFSSWANIFPDEIGSFYNFNGNFPQTDWSPQSLAQDDTT HMKSLYAATRVTLADPLHLILGARYTNWRVDTLTYSMEKNHTTPYAGLVFDINDNWST YASYTSIFQPQNDRDSSGKYLAPITGNNYELGLKSDWMNSRLTTTLAIFRIEQDNVAQ STGTPIPGSNGETAYKAVDGTVSKGVEFELNGAITDNWQLTFGATRYIAEDNEGNAVN PNLPRTTVKMFTSYRLPVMPELTVGGGVNWQNRVYTDTVTPYGTFRAEQGSYALVDLF TRYQVTKNFSLQGNVNNLFDKTYDTNVEGSIVYGTPRNFSITGTYQF" gene 1161885..1162244 /gene="hinT" /locus_tag="b1103" /gene_synonym="ECK1089; JW1089; ycfF" /db_xref="EcoGene:EG12172" /db_xref="GeneID:948549" CDS 1161885..1162244 /gene="hinT" /locus_tag="b1103" /gene_synonym="ECK1089; JW1089; ycfF" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="purine nucleoside phosphoramidase, dadA activator protein" /protein_id="NP_415621.3" /db_xref="GI:49176077" /db_xref="ASAP:ABE-0003729" /db_xref="UniProtKB/Swiss-Prot:P0ACE7" /db_xref="EcoGene:EG12172" /db_xref="GeneID:948549" /translation="MAEETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIP NILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHM HLLGGRPLGPMLAHKGL" gene 1162247..1162624 /gene="ycfL" /locus_tag="b1104" /gene_synonym="ECK1090; JW1090" /db_xref="EcoGene:EG13430" /db_xref="GeneID:948539" CDS 1162247..1162624 /gene="ycfL" /locus_tag="b1104" /gene_synonym="ECK1090; JW1090" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_415622.1" /db_xref="GI:16129067" /db_xref="ASAP:ABE-0003731" /db_xref="UniProtKB/Swiss-Prot:P75946" /db_xref="EcoGene:EG13430" /db_xref="GeneID:948539" /translation="MRKGCFGLVSLVLLLLVGCRSHPEIPVNDEQSLVMESSLLAAGI SAEKPFLSTSDIQPSASSTLYNERQEPVTVHYRFYWYDARGLEMHPLERPRSVTIPAH SAVTLYGSANFLGAHKVRLYLYL" gene 1162638..1163279 /gene="lpoB" /locus_tag="b1105" /gene_synonym="ECK1091; JW5157; ycfM" /db_xref="EcoGene:EG13431" /db_xref="GeneID:948536" CDS 1162638..1163279 /gene="lpoB" /locus_tag="b1105" /gene_synonym="ECK1091; JW5157; ycfM" /codon_start=1 /transl_table=11 /product="OM lipoprotein stimulator of MrcB transpeptidase" /protein_id="NP_415623.1" /db_xref="GI:16129068" /db_xref="ASAP:ABE-0003733" /db_xref="UniProtKB/Swiss-Prot:P0AB38" /db_xref="EcoGene:EG13431" /db_xref="GeneID:948536" /translation="MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQ PVPTVPSVPTIPQQPGPIEHEDQTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSV LLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGT RSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ" gene 1163260..1164084 /gene="thiK" /locus_tag="b1106" /gene_synonym="ECK1092; JW1092; ycfN" /db_xref="EcoGene:EG13432" /db_xref="GeneID:948525" CDS 1163260..1164084 /gene="thiK" /locus_tag="b1106" /gene_synonym="ECK1092; JW1092; ycfN" /EC_number="2.7.1.89" /function="enzyme; Biosynthesis of cofactors, carriers: Thiamine" /note="putative beta-glucosidase" /codon_start=1 /transl_table=11 /product="thiamine kinase" /protein_id="NP_415624.1" /db_xref="GI:16129069" /db_xref="ASAP:ABE-0003735" /db_xref="UniProtKB/Swiss-Prot:P75948" /db_xref="EcoGene:EG13432" /db_xref="GeneID:948525" /translation="MPFRSNNPITRDELLSRFFPQYHPVTTFNSGLSGGSFLIEHQGQ RFVVRQPHDPDAPQSAFLRQYRALSQLPACIAPKPHLYLRDWMVVDYLPGAVKTYLPD TNELAGLLYYLHQQPRFGWRITLLPLLELYWQQSDPARRTVGWLRMLKRLRKAREPRP LRLSPLHMDVHAGNLVHSASGLKLIDWEYAGDGDIALELAAVWVENTEQHRQLVNDYA TRAKIYPAQLWRQVRRWFPWLLMLKAGWFEYRWRQTGDQQFIRLADDTWRQLLIKQ" gene 1164095..1165120 /gene="nagZ" /locus_tag="b1107" /gene_synonym="ECK1093; JW1093; ycfO" /db_xref="EcoGene:EG13433" /db_xref="GeneID:945671" CDS 1164095..1165120 /gene="nagZ" /locus_tag="b1107" /gene_synonym="ECK1093; JW1093; ycfO" /EC_number="3.2.1.52" /GO_process="GO:0000270 - peptidoglycan metabolic process" /codon_start=1 /transl_table=11 /product="beta N-acetyl-glucosaminidase" /protein_id="NP_415625.1" /db_xref="GI:16129070" /db_xref="ASAP:ABE-0003737" /db_xref="UniProtKB/Swiss-Prot:P75949" /db_xref="EcoGene:EG13433" /db_xref="GeneID:945671" /translation="MGPVMLDVEGYELDAEEREILAHPLVGGLILFTRNYHDPAQLRE LVRQIRAASRNRLVVAVDQEGGRVQRFREGFTRLPAAQSFAALSGMEEGGKLAQEAGW LMASEMIAMDIDISFAPVLDVGHISAAIGERSYHADPQKALAIASRFIDGMHEAGMKT TGKHFPGHGAVTADSHKETPCDPRPQAEIRAKDMSVFSSLIRENKLDAIMPAHVIYSD VDPRPASGSPYWLKTVLRQELGFDGVIFSDDLSMEGAAIMGSYAERGQASLDAGCDMI LVCNNRKGAVSVLDNLSPIKAERVTRLYHKGSFSRQELMDSARWKAISTRLNQLHERW QEEKAGH" gene 1165143..1165685 /gene="ycfP" /locus_tag="b1108" /gene_synonym="ECK1094; JW5158" /db_xref="EcoGene:EG13434" /db_xref="GeneID:945676" CDS 1165143..1165685 /gene="ycfP" /locus_tag="b1108" /gene_synonym="ECK1094; JW5158" /codon_start=1 /transl_table=11 /product="putative UPF0227 family esterase" /protein_id="NP_415626.4" /db_xref="GI:90111213" /db_xref="ASAP:ABE-0003740" /db_xref="UniProtKB/Swiss-Prot:P0A8E1" /db_xref="EcoGene:EG13434" /db_xref="GeneID:945676" /translation="MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQ HLLKEVDKMLQLNVDERPLICGVGLGGYWAERIGFLCDIRQVIFNPNLFPYENMEGKI DRPEEYADIATKCVTNFREKNRDRCLVILSRNDEALNSQRTSEELHHYYEIVWDEEQT HKFKNISPHLQRIKAFKTLG" repeat_region 1165739..1165813 /note="REP102 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene 1166085..1167389 /gene="ndh" /locus_tag="b1109" /gene_synonym="ECK1095; JW1095" /db_xref="EcoGene:EG10649" /db_xref="GeneID:946792" CDS 1166085..1167389 /gene="ndh" /locus_tag="b1109" /gene_synonym="ECK1095; JW1095" /EC_number="1.16.1.-" /EC_number="1.6.99.3" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration" /note="respiratory NADH dehydrogenase" /codon_start=1 /transl_table=11 /product="respiratory NADH dehydrogenase 2/cupric reductase" /protein_id="NP_415627.1" /db_xref="GI:16129072" /db_xref="ASAP:ABE-0003746" /db_xref="UniProtKB/Swiss-Prot:P00393" /db_xref="EcoGene:EG10649" /db_xref="GeneID:946792" /translation="MTTPLKKIVIVGGGAGGLEMATQLGHKLGRKKKAKITLVDRNHS HLWKPLLHEVATGSLDEGVDALSYLAHARNHGFQFQLGSVIDIDREAKTITIAELRDE KGELLVPERKIAYDTLVMALGSTSNDFNTPGVKENCIFLDNPHQARRFHQEMLNLFLK YSANLGANGKVNIAIVGGGATGVELSAELHNAVKQLHSYGYKGLTNEALNVTLVEAGE RILPALPPRISAAAHNELTKLGVRVLTQTMVTSADEGGLHTKDGEYIEADLMVWAAGI KAPDFLKDIGGLETNRINQLVVEPTLQTTRDPDIYAIGDCASCPRPEGGFVPPRAQAA HQMATCAMNNILAQMNGKPLKNYQYKDHGSLVSLSNFSTVGSLMGNLTRGSMMIEGRI ARFVYISLYRMHQIALHGYFKTGLMMLVGSINRVIRPRLKLH" repeat_region 1167402..1167431 /note="REP103 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 1167599..1168138 /gene="ycfJ" /locus_tag="b1110" /gene_synonym="ECK1096; JW1096" /db_xref="EcoGene:EG12444" /db_xref="GeneID:945977" CDS 1167599..1168138 /gene="ycfJ" /locus_tag="b1110" /gene_synonym="ECK1096; JW1096" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_415628.1" /db_xref="GI:16129073" /db_xref="ASAP:ABE-0003752" /db_xref="UniProtKB/Swiss-Prot:P0AB35" /db_xref="EcoGene:EG12444" /db_xref="GeneID:945977" /translation="MNKSMLAGIGIGVAAALGVAAVASLNVFERGPQYAQVVSATPIK ETVKTPRQECRNVTVTHRRPVQDENRITGSVLGAVAGGVIGHQFGGGRGKDVATVVGA LGGGYAGNQIQGSLQESDTYTTTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDRD PGTQIPLDSNGQLILNNKV" gene complement(1168200..1168832) /gene="ycfQ" /locus_tag="b1111" /gene_synonym="ECK1097; JW5159" /db_xref="EcoGene:EG13435" /db_xref="GeneID:947425" CDS complement(1168200..1168832) /gene="ycfQ" /locus_tag="b1111" /gene_synonym="ECK1097; JW5159" /function="regulator; Not classified" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent" /codon_start=1 /transl_table=11 /product="repressor for bhsA(ycfR)" /protein_id="NP_415629.4" /db_xref="GI:90111214" /db_xref="ASAP:ABE-0003754" /db_xref="UniProtKB/Swiss-Prot:P75952" /db_xref="EcoGene:EG13435" /db_xref="GeneID:947425" /translation="MATDSTQCVKKSRGRPKVFDRDAALDKAMKLFWQHGYEATSLAD LVEATGAKAPTLYAEFTNKEGLFRAVLDRYIDRFAAKHEAQLFCEEKSVESALADYFA AIANCFTSKDTPAGCFMINNCTTLSPDSGDIANTLKSRHAMQERTLQQFLCQRQARGE IPPHCDVTHLAEFLNCIIQGMSISAREGASLEKLMQIAGTTLRLWPELVK" gene 1169073..1169330 /gene="bhsA" /locus_tag="b1112" /gene_synonym="ECK1098; JW1098; ycfR" /db_xref="EcoGene:EG13436" /db_xref="GeneID:945492" CDS 1169073..1169330 /gene="bhsA" /locus_tag="b1112" /gene_synonym="ECK1098; JW1098; ycfR" /codon_start=1 /transl_table=11 /product="biofilm, cell surface and signaling protein" /protein_id="NP_415630.1" /db_xref="GI:16129075" /db_xref="ASAP:ABE-0003758" /db_xref="UniProtKB/Swiss-Prot:P0AB40" /db_xref="EcoGene:EG13436" /db_xref="GeneID:945492" /translation="MKNVKTLIAAAILSSMSFASFAAVEVQSTPEGQQKVGTISANAG TNLGSLEEQLAQKADEMGAKSFRITSVTGPNTLHGTAVIYK" gene complement(1169412..1170374) /gene="ldtC" /locus_tag="b1113" /gene_synonym="ECK1099; JW5820; ycfS" /db_xref="EcoGene:EG13437" /db_xref="GeneID:945666" CDS complement(1169412..1170374) /gene="ldtC" /locus_tag="b1113" /gene_synonym="ECK1099; JW5820; ycfS" /function="enzyme; Murein sacculus, peptidoglycan" /codon_start=1 /transl_table=11 /product="L,D-transpeptidase linking Lpp to murein" /protein_id="NP_415631.1" /db_xref="GI:16129076" /db_xref="ASAP:ABE-0003760" /db_xref="UniProtKB/Swiss-Prot:P75954" /db_xref="EcoGene:EG13437" /db_xref="GeneID:945666" /translation="MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGEN KFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPRE GIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTAN IRARYKAQGIELPAVVPAGLDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCI RLRDDDIKTLFSQVTPGTKVNIINTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPI TLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL" gene complement(1170518..1173964) /gene="mfd" /locus_tag="b1114" /gene_synonym="ECK1100; JW1100" /db_xref="EcoGene:EG11619" /db_xref="GeneID:945681" CDS complement(1170518..1173964) /gene="mfd" /locus_tag="b1114" /gene_synonym="ECK1100; JW1100" /function="factor; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006350 - transcription" /note="transcription-repair coupling factor; mutation frequency decline" /codon_start=1 /transl_table=11 /product="transcription-repair coupling factor" /protein_id="NP_415632.1" /db_xref="GI:16129077" /db_xref="ASAP:ABE-0003763" /db_xref="UniProtKB/Swiss-Prot:P30958" /db_xref="EcoGene:EG11619" /db_xref="GeneID:945681" /translation="MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVL IAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHG EYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFP TDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF PANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNW PRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESE GRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLL GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEY LMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAA ELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDR LVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEM ISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKE RIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVV REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL LTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI ASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE FAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENA IA" gene complement(1174092..1175165) /gene="ycfT" /locus_tag="b1115" /gene_synonym="ECK1101; JW1101" /db_xref="EcoGene:EG13438" /db_xref="GeneID:945679" CDS complement(1174092..1175165) /gene="ycfT" /locus_tag="b1115" /gene_synonym="ECK1101; JW1101" /codon_start=1 /transl_table=11 /product="inner membrane protein" /protein_id="NP_415633.1" /db_xref="GI:16129078" /db_xref="ASAP:ABE-0003767" /db_xref="UniProtKB/Swiss-Prot:P75955" /db_xref="EcoGene:EG13438" /db_xref="GeneID:945679" /translation="MKQKELWINQIKGLCICLVVIYHSVITFYPHLTTFQHPLSEVLS KCWIYFNLYLAPFRMPVFFFISGYLIRRYIDSVPWGNCLDKRIWNIFWVLALWGVVQW LALSALNQWLAPERDLSNASNAAYADSTGEFLHGMITASTSLWYLYALIVYFVVCKIF SRLALPLFALFVLLSVAVNFVPTPWWGMNSVIRNLPYYSLGAWFGATIMTCVKEVPLR RHLLMASLLTVLAVGAWLFTISLLLSLVSIVVIMKLFYQYEQRFGMRSTSLLNVIGSN TIAIYTTHRILVEIFSLTLLAQMNAARWSPQVELTLLLVYPFVSLFICTVAGLLVRKL SQRAFSDLLFSPPSLPAAVSYSR" gene 1175427..1176626 /gene="lolC" /locus_tag="b1116" /gene_synonym="ECK1102; JW5161; ycfU" /db_xref="EcoGene:EG13439" /db_xref="GeneID:945673" CDS 1175427..1176626 /gene="lolC" /locus_tag="b1116" /gene_synonym="ECK1102; JW5161; ycfU" /experiment="N-terminus verified by Edman degradation: PMID 10783239" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="lipoprotein-releasing system transmembrane protein" /protein_id="NP_415634.1" /db_xref="GI:16129079" /db_xref="ASAP:ABE-0003772" /db_xref="UniProtKB/Swiss-Prot:P0ADC3" /db_xref="EcoGene:EG13439" /db_xref="GeneID:945673" /translation="MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTV LSVMNGFERELQNNILGLMPQAILSSEHGSLNPQQLPETAVKLDGVNRVAPITTGDVV LQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGD QIRVMVPSASQFTPMGRIPSQRLFNVIGTFAANSEVDGYEMLVNIEDASRLMRYPAGN ITGWRLWLDEPLKVDSLSQQKLPEGSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVA VAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMVFMVQGASAGIIGAILGAALGA LLASQLNNLMPIIGVLLDGAALPVAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQP AEALRYE" gene 1176619..1177320 /gene="lolD" /locus_tag="b1117" /gene_synonym="ECK1103; JW5162; ycfV" /db_xref="EcoGene:EG13440" /db_xref="GeneID:945670" CDS 1176619..1177320 /gene="lolD" /locus_tag="b1117" /gene_synonym="ECK1103; JW5162; ycfV" /function="putative transport; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 10783239" /GO_component="GO:0005737 - cytoplasm" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="outer membrane-specific lipoprotein transporter subunit" /protein_id="NP_415635.4" /db_xref="GI:90111215" /db_xref="ASAP:ABE-0003774" /db_xref="UniProtKB/Swiss-Prot:P75957" /db_xref="EcoGene:EG13440" /db_xref="GeneID:945670" /translation="MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSVGEGEMMAIVGSS GSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF TALENVAMPLLIGKKKPAEINSRALEMLKAVGLDHRANHRPSELSGGERQRVAIARAL VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM RDGRLTAELSLMGAE" gene 1177320..1178564 /gene="lolE" /locus_tag="b1118" /gene_synonym="ECK1104; JW1104; ycfW" /db_xref="EcoGene:EG13441" /db_xref="GeneID:945665" CDS 1177320..1178564 /gene="lolE" /locus_tag="b1118" /gene_synonym="ECK1104; JW1104; ycfW" /function="putative enzyme; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative kinase; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="lipoprotein-releasing system transmembrane protein" /protein_id="NP_415636.1" /db_xref="GI:16129081" /db_xref="ASAP:ABE-0003776" /db_xref="UniProtKB/Swiss-Prot:P75958" /db_xref="EcoGene:EG13441" /db_xref="GeneID:945665" /translation="MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVG LSAMNGFERELNNRILAVVPHGEIEAVDQPWTNWQEALDHVQKVPGIAAAAPYINFTG LVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKV KQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMG SSVSGIALKMTDVFNANKLVRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAM VLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCG VIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSL LASWYPARRASNIDPARVLSGQ" gene 1178593..1179504 /gene="nagK" /locus_tag="b1119" /gene_synonym="ECK1105; JW1105; ycfX" /db_xref="EcoGene:EG13442" /db_xref="GeneID:945664" CDS 1178593..1179504 /gene="nagK" /locus_tag="b1119" /gene_synonym="ECK1105; JW1105; ycfX" /EC_number="2.7.1.59" /experiment="N-terminus verified by Edman degradation: PMID 15489439" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent" /codon_start=1 /transl_table=11 /product="N-acetyl-D-glucosamine kinase" /protein_id="NP_415637.1" /db_xref="GI:16129082" /db_xref="ASAP:ABE-0003778" /db_xref="UniProtKB/Swiss-Prot:P75959" /db_xref="EcoGene:EG13442" /db_xref="GeneID:945664" /translation="MYYGFDIGGTKIALGVFDSGRQLQWEKRVPTPRDSYDAFLDAVC ELVAEADQRFGCKGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRL DNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLIFNGKPITGKSYITGEFGHMRL PVDALTMMGLDFPLRRCGCGQHGCIENYLSGRGFAWLYQHYYHQPLQAPEIIALYDQG DEQARAHVERYLDLLAVCLGNILTIVDPDLVVIGGGLSNFPAITTQLADRLPRHLLPV ARVPRIERARHGDAGGMRGAAFLHLTD" gene 1179631..1180359 /gene="cobB" /locus_tag="b1120" /gene_synonym="ECK1106; JW1106; npdA; ycfY" /db_xref="EcoGene:EG13443" /db_xref="GeneID:945687" CDS 1179631..1180359 /gene="cobB" /locus_tag="b1120" /gene_synonym="ECK1106; JW1106; npdA; ycfY" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent" /note="putative nicotinic acid mononucleotide:5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase" /codon_start=1 /transl_table=11 /product="deacetylase of acs and cheY, chemotaxis regulator" /protein_id="NP_415638.2" /db_xref="GI:308209619" /db_xref="ASAP:ABE-0003781" /db_xref="UniProtKB/Swiss-Prot:P75960" /db_xref="EcoGene:EG13443" /db_xref="GeneID:945687" /translation="MEKPRVLVLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGF DRDPELVQAFYNARRRQLQQPEIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAG NTNVIHMHGELLKVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGM DEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYY GPASQVVPEFVEKLLKGLKAGSIA" repeat_region 1180354..1180449 /note="RIP104 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(1180479..1181267) /gene="ycfZ" /locus_tag="b1121" /gene_synonym="ECK1107; JW1107" /db_xref="EcoGene:EG13444" /db_xref="GeneID:945685" CDS complement(1180479..1181267) /gene="ycfZ" /locus_tag="b1121" /gene_synonym="ECK1107; JW1107" /function="putative factor; Not classified" /codon_start=1 /transl_table=11 /product="inner membrane protein" /protein_id="NP_415639.1" /db_xref="GI:16129084" /db_xref="ASAP:ABE-0003784" /db_xref="UniProtKB/Swiss-Prot:P75961" /db_xref="EcoGene:EG13444" /db_xref="GeneID:945685" /translation="MKKFIILLSLLILLPLTAASKPLIPIMKTLFTDVTGTVPDAEEI AHKAELFRQQTGIAPFIVVLPDINNEASLRQNGKAMLAHASSSLSDVKGSVLLLFTTR EPRLIMITNGQVESGLDDKHLGLLIENHTLAYLNADLWYQGINNALAVLQAQILKQST PPLTYYPHPGQQHENAPPGSTNTLGFIAWAATFILFSRIFYYTTRFIYALKFAVAMTI ANMGYQALCLYIDNSFAITRISPLWAGLIGVCTFIAALLLTSKR" gene complement(1181264..1181725) /gene="ymfA" /locus_tag="b1122" /gene_synonym="ECK1108; JW5164" /db_xref="EcoGene:EG13445" /db_xref="GeneID:945684" CDS complement(1181264..1181725) /gene="ymfA" /locus_tag="b1122" /gene_synonym="ECK1108; JW5164" /codon_start=1 /transl_table=11 /product="DUF3592 family inner membrane protein" /protein_id="NP_415640.2" /db_xref="GI:90111216" /db_xref="ASAP:ABE-0003786" /db_xref="UniProtKB/Swiss-Prot:P75962" /db_xref="EcoGene:EG13445" /db_xref="GeneID:945684" /translation="MSQDSKVFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVI VDTVWHSSHSHRTGKDGSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSP GHPEKAEINNPWVNFFKWGFIGIMGVIFIAVGLLISMPSSKKSRRKRKSRP" gene complement(1181783..1182829) /gene="potD" /locus_tag="b1123" /gene_synonym="ECK1109; JW1109" /db_xref="EcoGene:EG10752" /db_xref="GeneID:945682" CDS complement(1181783..1182829) /gene="potD" /locus_tag="b1123" /gene_synonym="ECK1109; JW1109" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0009310 - amine catabolic process; GO:0006596 - polyamine biosynthetic process" /note="spermidine/putrescine periplasmic transport protein; periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="spermidine/putrescine ABC transporter periplasmic binding protein" /protein_id="NP_415641.1" /db_xref="GI:16129086" /db_xref="ASAP:ABE-0003789" /db_xref="UniProtKB/Swiss-Prot:P0AFK9" /db_xref="EcoGene:EG10752" /db_xref="GeneID:945682" /translation="MKKWSRHLLAAGALALGMSAAHADDNNTLYFYNWTEYVPPGLLE QFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKS KLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPEYK GSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPY MEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLIN FLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDKTLYPDAETIKNGEWQNDVGAAS SIYEEYYQKLKAGR" gene complement(1182826..1183620) /gene="potC" /locus_tag="b1124" /gene_synonym="ECK1110; JW1110" /db_xref="EcoGene:EG10751" /db_xref="GeneID:945691" CDS complement(1182826..1183620) /gene="potC" /locus_tag="b1124" /gene_synonym="ECK1110; JW1110" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009310 - amine catabolic process; GO:0006596 - polyamine biosynthetic process" /note="spermidine/putrescine transport system permease; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="spermidine/putrescine ABC transporter permease" /protein_id="NP_415642.1" /db_xref="GI:16129087" /db_xref="ASAP:ABE-0003791" /db_xref="UniProtKB/Swiss-Prot:P0AFK6" /db_xref="EcoGene:EG10751" /db_xref="GeneID:945691" /translation="MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTT KWYSLLMNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKPFVSGMLFV VMMSPDIVMAISLLVLFMLLGIQLGFWSLLFSHITFCLPFVVVTVYSRLKGFDVRMLE AAKDLGASEFTILRKIILPLAMPAVAAGWVLSFTLSMDDVVVSSFVTGPSYEILPLKI YSMVKVGVSPEVNALATILLVLSLVMVIASQLIARDKTKGNTGDVK" gene complement(1183617..1184444) /gene="potB" /locus_tag="b1125" /gene_synonym="ECK1111; JW1111" /db_xref="EcoGene:EG10750" /db_xref="GeneID:945692" CDS complement(1183617..1184444) /gene="potB" /locus_tag="b1125" /gene_synonym="ECK1111; JW1111" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009310 - amine catabolic process; GO:0006596 - polyamine biosynthetic process" /note="spermidine/putrescine transport system permease; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="spermidine/putrescine ABC transporter permease" /protein_id="NP_415643.3" /db_xref="GI:162135921" /db_xref="ASAP:ABE-0003794" /db_xref="UniProtKB/Swiss-Prot:P0AFK4" /db_xref="EcoGene:EG10750" /db_xref="GeneID:945692" /translation="MIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFVKMVFTLDNYT RLLDPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTN SLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYILLPFMVMPLY SSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLM GGAKNLLIGNVIKVQFLNIRDWPFGAATSITLTIVMGLMLLVYWRASRLLNKKVELE" gene complement(1184458..1185594) /gene="potA" /locus_tag="b1126" /gene_synonym="ECK1112; JW1112" /db_xref="EcoGene:EG10749" /db_xref="GeneID:946323" CDS complement(1184458..1185594) /gene="potA" /locus_tag="b1126" /gene_synonym="ECK1112; JW1112" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009310 - amine catabolic process; GO:0006596 - polyamine biosynthetic process" /note="ATP-binding component of spermidine/putrescine transport" /codon_start=1 /transl_table=11 /product="spermidine/putrescine ABC transporter ATPase" /protein_id="NP_415644.1" /db_xref="GI:16129089" /db_xref="ASAP:ABE-0003796" /db_xref="UniProtKB/Swiss-Prot:P69874" /db_xref="EcoGene:EG10749" /db_xref="GeneID:946323" /translation="MGQSKKLNKQPSSLSPLVQLAGIRKCFDGKEVIPQLDLTINNGE FLTLLGPSGCGKTTVLRLIAGLETVDSGRIMLDNEDITHVPAENRYVNTVFQSYALFP HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLETFAQRKPHQLSGGQQQRVAIAR AVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI VVMRDGRIEQDGTPREIYEEPKNLFVAGFIGEINMFNATVIERLDEQRVRANVEGREC NIYVNFAVEPGQKLHVLLRPEDLRVEEINDDNHAEGLIGYVRERNYKGMTLESVVELE NGKMVMVSEFFNEDDPDFDHSLDQKMAINWVESWEVVLADEEHK" gene 1185844..1187070 /gene="pepT" /locus_tag="b1127" /gene_synonym="ECK1113; JW1113" /db_xref="EcoGene:EG11549" /db_xref="GeneID:946333" CDS 1185844..1187070 /gene="pepT" /locus_tag="b1127" /gene_synonym="ECK1113; JW1113" /function="enzyme; Degradation of proteins, peptides, glyco" /note="putative peptidase T" /codon_start=1 /transl_table=11 /product="peptidase T" /protein_id="NP_415645.1" /db_xref="GI:16129090" /db_xref="ASAP:ABE-0003800" /db_xref="UniProtKB/Swiss-Prot:P29745" /db_xref="EcoGene:EG11549" /db_xref="GeneID:946333" /translation="MDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEE MGLINVTLSEKGTLMATLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGD IALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKKI PHGDIRVAFTPDEEVGKGAKHFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIV GNNVHPGTAKGVMVNALSLAARIHAEVPADESPEMTEGYEGFYHLASMKGTVERADMH YIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILD IAQQAMRDCDIEPELKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEK AVQVIVRIAELTAQRK" repeat_region 1187083..1187106 /note="REP105 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1187119..1188240) /gene="roxA" /locus_tag="b1128" /gene_synonym="ECK1114; JW1114; ycfD" /db_xref="EcoGene:EG11430" /db_xref="GeneID:945391" CDS complement(1187119..1188240) /gene="roxA" /locus_tag="b1128" /gene_synonym="ECK1114; JW1114; ycfD" /EC_number="1.14.11.-" /function="enzyme; Proteins - translation and modification" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L16 arginine hydroxylase; 2-oxoglutarate oxygenase" /protein_id="NP_415646.4" /db_xref="GI:90111217" /db_xref="ASAP:ABE-0003802" /db_xref="UniProtKB/Swiss-Prot:P27431" /db_xref="EcoGene:EG11430" /db_xref="GeneID:945391" /translation="MEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLA MESEVDSRLVSHQDGKWQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRE LPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHPDLL QVDPFEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYV LQRELGGNYYSDPDVPPRAHPADVLPQEMDKLREMMLELINQPEHFKQWFGEFISQSR HELDIAPPEPPYQPDEIYDALKQGEVLVRLGGLRVLRIGDDVYANGEKIDSPHRPALD ALASNIALTAENFGDALEDPSFLAMLAALVNSGYWFFEG" gene complement(1188316..1189776) /gene="phoQ" /locus_tag="b1129" /gene_synonym="ECK1115; JW1115" /db_xref="EcoGene:EG10732" /db_xref="GeneID:946326" CDS complement(1188316..1189776) /gene="phoQ" /locus_tag="b1129" /gene_synonym="ECK1115; JW1115" /function="enzyme; Global regulatory functions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006464 - protein modification process" /note="sensor protein PhoQ" /codon_start=1 /transl_table=11 /product="sensory histidine kinase in two-component regulatory system with PhoP" /protein_id="NP_415647.1" /db_xref="GI:16129092" /db_xref="ASAP:ABE-0003805" /db_xref="UniProtKB/Swiss-Prot:P23837" /db_xref="EcoGene:EG10732" /db_xref="GeneID:946326" /translation="MKKLLRLFFPLSLRVRFLLATAAVVLVLSLAYGMVALIGYSVSF DKTTFRLLRGESNLFYTLAKWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDV PWLMKMIQPDWLKSNGFHEIEADVNDTSLLLSGDHSIQQQLQEVREDDDDAEMTHSVA VNVYPATSRMPKLTIVVVDTIPVELKSSYMVWSWFIYVLSANLLLVIPLLWVAAWWSL RPIEALAKEVRELEEHNRELLNPATTRELTSLVRNLNRLLKSERERYDKYRTTLTDLT HSLKTPLAVLQSTLRSLRSEKMSVSDAEPVMLEQISRISQQIGYYLHRASMRGGTLLS RELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACK YCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAR EITEQYEGKIVAGESMLGGARMEVIFGRQHSAPKDE" gene complement(1189776..1190447) /gene="phoP" /locus_tag="b1130" /gene_synonym="ECK1116; JW1116" /db_xref="EcoGene:EG10731" /db_xref="GeneID:945697" CDS complement(1189776..1190447) /gene="phoP" /locus_tag="b1130" /gene_synonym="ECK1116; JW1116" /function="regulator; Global regulatory functions" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="transcriptional regulatory protein" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with PhoQ" /protein_id="NP_415648.1" /db_xref="GI:16129093" /db_xref="ASAP:ABE-0003807" /db_xref="UniProtKB/Swiss-Prot:P23836" /db_xref="EcoGene:EG10731" /db_xref="GeneID:945697" /translation="MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHI PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKP FHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMET LIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY LFELR" repeat_region 1190580..1190602 /note="REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1190616..1191986) /gene="purB" /locus_tag="b1131" /gene_synonym="ade; ECK1117; JW1117" /db_xref="EcoGene:EG11314" /db_xref="GeneID:945695" CDS complement(1190616..1191986) /gene="purB" /locus_tag="b1131" /gene_synonym="ade; ECK1117; JW1117" /EC_number="4.3.2.2" /function="enzyme; Purine ribonucleotide biosynthesis" /experiment="N-terminus verified by Edman degradation: PMID 1729205" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006164 - purine nucleotide biosynthetic process" /codon_start=1 /transl_table=11 /product="adenylosuccinate lyase" /protein_id="NP_415649.1" /db_xref="GI:16129094" /db_xref="ASAP:ABE-0003810" /db_xref="UniProtKB/Swiss-Prot:P0AB89" /db_xref="EcoGene:EG11314" /db_xref="GeneID:945695" /translation="MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWL QKLAAHAAIKEVPAFAADAIGYLDAIVASFSEEDAARIKTIERTTNHDVKAVEYFLKE KVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGIKDLAVQ YRDIPLLSRTHGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHI AAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVW GYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQ RDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTV MRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEKARLKAMTPANYIGRAIT MVDELK" gene complement(1191990..1192631) /gene="hflD" /locus_tag="b1132" /gene_synonym="ECK1118; hslZ; JW5165; ycfC" /db_xref="EcoGene:EG11345" /db_xref="GeneID:945693" CDS complement(1191990..1192631) /gene="hflD" /locus_tag="b1132" /gene_synonym="ECK1118; hslZ; JW5165; ycfC" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative lysogenization regulator" /protein_id="NP_415650.1" /db_xref="GI:16129095" /db_xref="ASAP:ABE-0003812" /db_xref="UniProtKB/Swiss-Prot:P25746" /db_xref="EcoGene:EG11345" /db_xref="GeneID:945693" /translation="MAKNYYDITLALAGICQSARLVQQLAHQGHCDADALHVSLNSII DMNPSSTLAVFGGSEANLRVGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLSSA KGALDTLGNRINGLQRQLEHFDLQSETLMSAMAAIYVDVISPLGPRIQVTGSPAVLQS PQVQAKVRATLLAGIRAAVLWHQVGGGRLQLMFSRNRLTTQAKQILAHLTPEL" gene complement(1192667..1193773) /gene="mnmA" /locus_tag="b1133" /gene_synonym="asuE; ECK1119; JW1119; trmU; ycfB" /db_xref="EcoGene:EG11344" /db_xref="GeneID:945690" CDS complement(1192667..1193773) /gene="mnmA" /locus_tag="b1133" /gene_synonym="asuE; ECK1119; JW1119; trmU; ycfB" /EC_number="2.1.1.61" /function="enzyme; tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="tRNA(Gln,Lys,Glu) U34 2-thiouridylase" /protein_id="NP_415651.4" /db_xref="GI:90111218" /db_xref="ASAP:ABE-0003815" /db_xref="UniProtKB/Swiss-Prot:P25745" /db_xref="EcoGene:EG11344" /db_xref="GeneID:945690" /translation="MSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDD GEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC NKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSH EQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQP GKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQG HEHPRLMSVGLIAQQLHWVDREPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFD EPVAAVTPGQSAVFYNGEVCLGGGIIEQRLPLPV" gene complement(1193827..1194288) /gene="nudJ" /locus_tag="b1134" /gene_synonym="ECK1120; JW1120; ymfB" /db_xref="EcoGene:EG13446" /db_xref="GeneID:945689" CDS complement(1193827..1194288) /gene="nudJ" /locus_tag="b1134" /gene_synonym="ECK1120; JW1120; ymfB" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="bifunctional thiamine pyrimidine pyrophosphate hydrolase and thiamine pyrophosphate hydrolase" /protein_id="NP_415652.1" /db_xref="GI:16129097" /db_xref="ASAP:ABE-0003818" /db_xref="UniProtKB/Swiss-Prot:P0AEI6" /db_xref="EcoGene:EG13446" /db_xref="GeneID:945689" /translation="MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETL VEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDID CCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTKGVI" gene complement(1194298..1194951) /gene="rluE" /locus_tag="b1135" /gene_synonym="ECK1121; JW1121; ymfC" /db_xref="EcoGene:EG13447" /db_xref="GeneID:945701" CDS complement(1194298..1194951) /gene="rluE" /locus_tag="b1135" /gene_synonym="ECK1121; JW1121; ymfC" /EC_number="4.2.1.70" /function="enzyme; rRNA modification" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="23S rRNA pseudouridine(2457) synthase" /protein_id="NP_415653.4" /db_xref="GI:162135898" /db_xref="ASAP:ABE-0003820" /db_xref="UniProtKB/Swiss-Prot:P75966" /db_xref="EcoGene:EG13447" /db_xref="GeneID:945701" /translation="MRQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILF NKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPG KRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD" gene 1195123..1196373 /gene="icd" /locus_tag="b1136" /gene_synonym="ECK1122; icdA; icdE; JW1122" /db_xref="EcoGene:EG10489" /db_xref="GeneID:945702" CDS 1195123..1196373 /gene="icd" /locus_tag="b1136" /gene_synonym="ECK1122; icdA; icdE; JW1122" /EC_number="1.1.1.42" /function="enzyme; Energy metabolism, carbon: TCA cycle; Phage or Prophage Related" /experiment="N-terminus verified by Edman degradation: PMID 9298646" /GO_process="GO:0009061 - anaerobic respiration; GO:0006099 - tricarboxylic acid cycle" /note="isocitrate dehydrogenase, specific for NADP+" /codon_start=1 /transl_table=11 /product="isocitrate dehydrogenase; e14 prophage attachment site; tellurite reductase" /protein_id="NP_415654.1" /db_xref="GI:16129099" /db_xref="ASAP:ABE-0003823" /db_xref="UniProtKB/Swiss-Prot:P08200" /db_xref="EcoGene:EG10489" /db_xref="GeneID:945702" /translation="MESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPA MLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIREYRVAIKGP LTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIY AGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAI ANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIV IKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECAL FEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVTYD FERLMDGAKLLKCSEFGDAIIENM" misc_feature 1196220..1211412 /note="cryptic prophage e14" gene complement(1196867..1197532) /gene="ymfD" /locus_tag="b1137" /gene_synonym="ECK1123; JW1123" /db_xref="EcoGene:EG13448" /db_xref="GeneID:945329" CDS complement(1196867..1197532) /gene="ymfD" /locus_tag="b1137" /gene_synonym="ECK1123; JW1123" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="e14 prophage; putative SAM-dependent methyltransferase" /protein_id="NP_415655.1" /db_xref="GI:16129100" /db_xref="ASAP:ABE-0003825" /db_xref="UniProtKB/Swiss-Prot:P75967" /db_xref="EcoGene:EG13448" /db_xref="GeneID:945329" /translation="MVLALNYNMHGVNIRSENAAKPHTMPSRYLCEYIRSIEKNGHAL DFGCGKLRYSDELISKFDEVTFLDSKRQLEREQIIRGIKTKIIDYVPRYYKNANTVAF EDVDKIIGGYDFILCSNVLSAVPCRDTIDKIVLSIKRLLKSGGETLIVNQYKSSYFKK YETGRKHLYGYIYKNSKSVSYYGLLDELAVQEICSSHGLEILKSWSKAGSSYVTVGSC NAI" gene complement(1197533..1198237) /gene="ymfE" /locus_tag="b1138" /gene_synonym="ECK1124; JW5166" /db_xref="EcoGene:EG13449" /db_xref="GeneID:946722" CDS complement(1197533..1198237) /gene="ymfE" /locus_tag="b1138" /gene_synonym="ECK1124; JW5166" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="e14 prophage; putative inner membrane protein" /protein_id="NP_415656.1" /db_xref="GI:16129101" /db_xref="ASAP:ABE-0003827" /db_xref="UniProtKB/Swiss-Prot:P75968" /db_xref="EcoGene:EG13449" /db_xref="GeneID:946722" /translation="MNNMFEPPKNYNEMLPKLHKATFLNTLIYCILLVIYEYIPLITL PTKYVPPIKDHESFINWALSFGILPCAFAIFAYLISGALDLHNNAAKLLRVRYLWDKH LIIKPLSRRAGVNRKLNKDEAHNVMSNLYYPEVRKIEDKHYIELFWNKVYYFWIFFEF SIIALISFLIIFFCKQMDIFHVEGSLLSLFFFVILSFSVSGIIFALTVKPRTESQVGK IPDDKIKEFFTKNNIN" gene 1198695..1199588 /gene="lit" /locus_tag="b1139" /gene_synonym="ECK1125; JW1125" /db_xref="EcoGene:EG10535" /db_xref="GeneID:948421" CDS 1198695..1199588 /gene="lit" /locus_tag="b1139" /gene_synonym="ECK1125; JW1125" /function="membrane; Phage or Prophage Related" /note="phage T4 late gene expression; at locus of e14 element" /codon_start=1 /transl_table=11 /product="T4 phage exclusion protein; cell death peptidase, e14 prophage" /protein_id="NP_415657.1" /db_xref="GI:16129102" /db_xref="ASAP:ABE-0003834" /db_xref="UniProtKB/Swiss-Prot:P11072" /db_xref="EcoGene:EG10535" /db_xref="GeneID:948421" /translation="MRSPICHLFSAINSSPFKIAPEKEQDLKTIVDDKKIIISVVSEP GFNIRVRKNESNNSHEIVLTVASLEYIWAFSNFFWVFTQEYSKSQKNNDEHFDLTGKN RLKKSDELLKWARKNLQTTGCESWPKKCPKPEAYLQGSEDSQVASEIFLCAIAWILHH EISHVVLQHPLVTTAFSTQEEREADSHATKWILGNLYESAPELKKRALGIATAVLCIQ SLEVENYFCLQNTHPAAYERIYSNISCYPVGNEELIEALCTVMLQYLFHGKNINVNLD GESFSSILGDLLCDISRLTSN" gene complement(1199679..1200806) /gene="intE" /locus_tag="b1140" /gene_synonym="ECK1126; int; JW1126; ycfI" /db_xref="EcoGene:EG12370" /db_xref="GeneID:948034" CDS complement(1199679..1200806) /gene="intE" /locus_tag="b1140" /gene_synonym="ECK1126; int; JW1126; ycfI" /function="Phage or Prophage Related" /note="prophage e14 integrase" /codon_start=1 /transl_table=11 /product="e14 prophage; putative integrase" /protein_id="NP_415658.1" /db_xref="GI:16129103" /db_xref="ASAP:ABE-0003836" /db_xref="UniProtKB/Swiss-Prot:P75969" /db_xref="EcoGene:EG12370" /db_xref="GeneID:948034" /translation="MAARPRKNNVSVPNLYPLYSRKVNKVYWRYKHPVTGKFHALGTN EAEAIAIATEANTRLAEQRTRQILAISDRIATSKGKAITTSTWLDRYQAIQDDRLKSG DIRLNTYKQKAKPVSLLRERAGMKLISAVDVRDIAQLLDEYIAAGRPRMAQVVRSVLI DVFKEAQHYGEVPPGYNPALATKQPRRKITRQRLSLEEWKKIFDIADATHRYMGNAML LALVTGQRLGDISRMKFSDIWDDHLHVIQEKTGSKIAIPLSLRLNAINWSLRDVVARC RDYAVSAYLVHFFRSTSQAERGAQVKANTLTMNFSKARDLARIDWGEGSPATFHEQRS LSERLYKEQGLDTQKLLGHKTQQQTDRYHDDRGKGWSKVAL" gene complement(1200787..1201032) /gene="xisE" /locus_tag="b1141" /gene_synonym="ECK1127; JW1127; Vxis; ymfG" /db_xref="EcoGene:EG14245" /db_xref="GeneID:945705" CDS complement(1200787..1201032) /gene="xisE" /locus_tag="b1141" /gene_synonym="ECK1127; JW1127; Vxis; ymfG" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="e14 prophage; putative excisionase" /protein_id="NP_415659.1" /db_xref="GI:16129104" /db_xref="ASAP:ABE-0003838" /db_xref="UniProtKB/Swiss-Prot:P75970" /db_xref="EcoGene:EG14245" /db_xref="GeneID:945705" /translation="MLQMLTLEEWAAEKYRSNPPSVSTLRRYAKQNLFCPPAMKQGRL WRVREDAELVGELVTPVIKKNDSLLLQRILSNGSQTA" gene 1201497..1201838 /gene="ymfI" /locus_tag="b1143" /gene_synonym="ECK1129; JW5168" /db_xref="EcoGene:EG14247" /db_xref="GeneID:945712" CDS 1201497..1201838 /gene="ymfI" /locus_tag="b1143" /gene_synonym="ECK1129; JW5168" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="e14 prophage; uncharacterized protein" /protein_id="NP_415661.2" /db_xref="GI:90111220" /db_xref="ASAP:ABE-0003846" /db_xref="UniProtKB/Swiss-Prot:P75972" /db_xref="EcoGene:EG14247" /db_xref="GeneID:945712" /translation="MNQFYVHVRLFEDTAEQTKKFEELMLNFLYQKTVKESDDSCCRL IPEGYILKSTMNCQQILDQTFSIANSAGVDANIFVCKFEQSACLLPSASLVGNDFVHY DLTPKPIKLDS" gene complement(1201776..1202084) /gene="ymfJ" /locus_tag="b1144" /gene_synonym="ECK1130" /db_xref="EcoGene:EG14248" /db_xref="GeneID:945718" CDS complement(1201776..1202084) /gene="ymfJ" /locus_tag="b1144" /gene_synonym="ECK1130" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="e14 prophage; uncharacterized protein" /protein_id="NP_415662.2" /db_xref="GI:90111221" /db_xref="ASAP:ABE-0003848" /db_xref="UniProtKB/Swiss-Prot:P75973" /db_xref="EcoGene:EG14248" /db_xref="GeneID:945718" /translation="MNEQNLKHVIALLLEDAKRLQQIEPNAGTEARILLAKQALKTCG AQAPGRTEFMNFMANTLTPLPCNGEKVSRVYHDTMVKALRIELDGLRRKIVMNEIVTN " gene complement(1202259..1202933) /gene="cohE" /locus_tag="b1145" /gene_synonym="ECK1131; JW1131; ymfK" /db_xref="EcoGene:EG14249" /db_xref="GeneID:945719" CDS complement(1202259..1202933) /gene="cohE" /locus_tag="b1145" /gene_synonym="ECK1131; JW1131; ymfK" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="e14 prophage; repressor protein phage e14" /protein_id="NP_415663.1" /db_xref="GI:16129108" /db_xref="ASAP:ABE-0003851" /db_xref="UniProtKB/Swiss-Prot:P75974" /db_xref="EcoGene:EG14249" /db_xref="GeneID:945719" /translation="MKTIHDIRRSNARKLRDGVGGNSSFATMIDREPTQTSRFMGDGA TKNIGDSMARHIEKCFDLPVGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGA WKEVGYSEVDLSTAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHG DDVIALMHDTGETTFKRLIEDGTQRYLKALNPNWPEPYIKINGNCSIIGTVIFSGKPR RYKIKA" gene 1203024..1203224 /gene="croE" /locus_tag="b1146" /gene_synonym="ECK4469; JW5169; ymfT" /db_xref="EcoGene:EG14414" /db_xref="GeneID:945720" CDS 1203024..1203224 /gene="croE" /locus_tag="b1146" /gene_synonym="ECK4469; JW5169; ymfT" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="e14 prophage; putative DNA-binding transcriptional regulator" /protein_id="NP_415664.2" /db_xref="GI:90111222" /db_xref="ASAP:ABE-0003856" /db_xref="UniProtKB/Swiss-Prot:P75975" /db_xref="EcoGene:EG14414" /db_xref="GeneID:945720" /translation="MKAYWDSLTKEQQGELAGKVGSTPGYLRLVFNGYKKASFVLAKK LEQYTSGAITKSDLRPDIYPKD" gene 1203268..1203825 /gene="ymfL" /locus_tag="b1147" /gene_synonym="ECK1133; JW1133" /db_xref="EcoGene:EG14250" /db_xref="GeneID:945717" CDS 1203268..1203825 /gene="ymfL" /locus_tag="b1147" /gene_synonym="ECK1133; JW1133" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="e14 prophage; putative DNA-binding transcriptional regulator" /protein_id="NP_415665.2" /db_xref="GI:145698241" /db_xref="ASAP:ABE-0003860" /db_xref="UniProtKB/Swiss-Prot:P75976" /db_xref="EcoGene:EG14250" /db_xref="GeneID:945717" /translation="MGKHHWKIEKQPEWYVKAVRKTIAALPSGYAEAADWLDVTENAL FNRLRADGDQIFPLGWAMVLQRAGGTHFIADAVAQSANGVFVSLPDVEDVDNADINQR LLEVIEQIGSYSKQIRSAIEDGVVEPHEKTAINDELYLSISKLQEHAALVYKIFCISE SNDARECAAPGVVASIASGCGETNA" gene 1203822..1204160 /gene="ymfM" /locus_tag="b1148" /gene_synonym="ECK1134; JW1134" /db_xref="EcoGene:EG14251" /db_xref="GeneID:945715" CDS 1203822..1204160 /gene="ymfM" /locus_tag="b1148" /gene_synonym="ECK1134; JW1134" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="e14 prophage; uncharacterized protein" /protein_id="NP_415666.1" /db_xref="GI:16129111" /db_xref="ASAP:ABE-0003862" /db_xref="UniProtKB/Swiss-Prot:P75977" /db_xref="EcoGene:EG14251" /db_xref="GeneID:945715" /translation="MNSLTTHYRRSQLIALPVPGGKAKVEYCYAVNVPGDREIVTHSF AEWAVGDFNRQKETVLCDKLTAGSKITTECPSESFVGSRKHNGLSTSAKVMSMNASAR SNSFVVNSGK" gene 1204170..1204403 /gene="oweE" /locus_tag="b4692" /gene_synonym="ECK4507" /pseudo /db_xref="EcoGene:EG14495" /db_xref="GeneID:7751644" CDS 1204170..1204403 /gene="oweE" /locus_tag="b4692" /gene_synonym="ECK4507" /note="pseudogene, lambda replication protein O homolog; CPS-53/KpLE1 prophage;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="EcoGene:EG14495" /db_xref="GeneID:7751644" gene 1204404..1205537 /gene="aaaE" /locus_tag="b4693" /gene_synonym="ECK1135; JW1135; ymfN" /pseudo /db_xref="EcoGene:EG14252" /db_xref="GeneID:7751645" CDS 1204404..1205537 /gene="aaaE" /locus_tag="b4693" /gene_synonym="ECK1135; JW1135; ymfN" /note="pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0003865" /db_xref="UniProtKB/Swiss-Prot:P75978" /db_xref="EcoGene:EG14252" /db_xref="GeneID:7751645" gene 1205549..1205731 /gene="ymfR" /locus_tag="b1150" /gene_synonym="ECK1136; JW1136" /db_xref="EcoGene:EG14336" /db_xref="GeneID:945700" CDS 1205549..1205731 /gene="ymfR" /locus_tag="b1150" /gene_synonym="ECK1136; JW1136" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="e14 prophage; uncharacterized protein" /protein_id="NP_415668.1" /db_xref="GI:16129113" /db_xref="ASAP:ABE-0003868" /db_xref="UniProtKB/Swiss-Prot:P75979" /db_xref="EcoGene:EG14336" /db_xref="GeneID:945700" /translation="MIMLILAPLVGVLGALLLAYGAWLIYPPAGFVVAGALCLFWSWL VARYLDRTQSSVGGGK" gene 1205731..1206142 /gene="beeE" /locus_tag="b1151" /gene_synonym="ECK1137; JW1137; ymfO" /pseudo /db_xref="EcoGene:EG14253" /db_xref="GeneID:945698" CDS 1205731..1206142 /gene="beeE" /locus_tag="b1151" /gene_synonym="ECK1137; JW1137; ymfO" /note="pseudogene, portal protein family, e14 prophage;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0003870" /db_xref="UniProtKB/Swiss-Prot:P75980" /db_xref="EcoGene:EG14253" /db_xref="GeneID:945698" gene 1206143..1206922 /gene="jayE" /locus_tag="b1152" /gene_synonym="ECK1138; JW5170; ymfP" /pseudo /db_xref="EcoGene:EG14254" /db_xref="GeneID:945703" CDS 1206143..1206922 /gene="jayE" /locus_tag="b1152" /gene_synonym="ECK1138; JW5170; ymfP" /note="pseudogene, e14 prophage;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0003872" /db_xref="UniProtKB/Swiss-Prot:P75981" /db_xref="EcoGene:EG14254" /db_xref="GeneID:945703" gene 1206913..1207497 /gene="ymfQ" /locus_tag="b1153" /gene_synonym="ECK1139; JW1139" /db_xref="EcoGene:EG14255" /db_xref="GeneID:945707" CDS 1206913..1207497 /gene="ymfQ" /locus_tag="b1153" /gene_synonym="ECK1139; JW1139" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="prohage e14 tail protein homolog" /protein_id="NP_415671.1" /db_xref="GI:16129116" /db_xref="ASAP:ABE-0003874" /db_xref="UniProtKB/Swiss-Prot:P75982" /db_xref="EcoGene:EG14255" /db_xref="GeneID:945707" /translation="MDVTNDDYIRLLSALLPPGPVWSASDPAIAGAAPSLTRVHQRAD ALMRELDPRTTTELINRWERLCGLPDECIPAGTQTLRQRQQRLDAKVNLAGGINEDFY LAQLAALGRPDATITRYDKSTFTCSSACTDAVNAPEWRYYWQVNMPATTNSTWMTCGD PCDSALRIWGDTVVECVLNKLCPSHTYVIFKYPE" gene 1207501..1208130 /gene="stfP" /locus_tag="b1154" /gene_synonym="ECK1140; JW1140; ycfK" /db_xref="EcoGene:EG12877" /db_xref="GeneID:945726" CDS 1207501..1208130 /gene="stfP" /locus_tag="b1154" /gene_synonym="ECK1140; JW1140; ycfK" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="e14 prophage; uncharacterized protein" /protein_id="NP_415672.1" /db_xref="GI:16129117" /db_xref="ASAP:ABE-0003876" /db_xref="UniProtKB/Swiss-Prot:P45581" /db_xref="EcoGene:EG12877" /db_xref="GeneID:945726" /translation="MHRIDTKTAQKDKFGAGKNGFTRGNPQTGTPATDLDDDYFDMLQ EELCSVVEASGASLEKGRHDQLLTALRALLLSRKNPFGDIKSDGTVQTALENLGLGEG AKLNAATATLGRTGFIAIPVMIGGIEQSVIIQWGWNAAKASASGGDGNTVVFPVAFNN ACVAVVANYDNVSAPINAVATGGYTTTSFLLRCAAQTGSYYYNWIAIGY" gene 1208132..1208545 /gene="tfaP" /locus_tag="b1155" /gene_synonym="ECK1141; JW5171; ymfS" /db_xref="EcoGene:EG14337" /db_xref="GeneID:945724" CDS 1208132..1208545 /gene="tfaP" /locus_tag="b1155" /gene_synonym="ECK1141; JW5171; ymfS" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="e14 prophage; uncharacterized protein" /protein_id="NP_415673.1" /db_xref="GI:16129118" /db_xref="ASAP:ABE-0003878" /db_xref="UniProtKB/Swiss-Prot:P09154" /db_xref="EcoGene:EG14337" /db_xref="GeneID:945724" /translation="MKIYCCLNTVGFFMDGCGVIPPDSKEITAEHWQSLLKSQAEGGV IDFSVFPPSIKEVIRTHDDEVADANFQKQMLISDATDFINSRQWQGKAALGRLKEDEL KQYNLWLDYLEALELVDTSSAPDIEWPTPPAVQAR" gene complement(1208517..1209119) /gene="tfaE" /locus_tag="b1156" /gene_synonym="ECK1142; JW1142; ycfA" /db_xref="EcoGene:EG11120" /db_xref="GeneID:945723" CDS complement(1208517..1209119) /gene="tfaE" /locus_tag="b1156" /gene_synonym="ECK1142; JW1142; ycfA" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="e14 prophage; putative tail fiber assembly protein" /protein_id="NP_415674.1" /db_xref="GI:16129119" /db_xref="ASAP:ABE-0003880" /db_xref="UniProtKB/Swiss-Prot:P09153" /db_xref="EcoGene:EG11120" /db_xref="GeneID:945723" /translation="MHKAILNSDLIATKAGDVTVYNYDGETREYISTSNEYLAVGVGI PACSCLDAPGTHKAGYAICRSADFNSWEYVPDHRGETVYSTKTGESKEIKAPGDYPEN TTTIAPLSPYDKWDGEKWVTDTEAQHSAAVDAAEAQRQSLIDAAMASISLIQLKLQAG RKLTQAETTRLNAVLDYIDAVTATDTSTAPDVIWPELPEA" gene complement(1209119..1209619) /gene="stfE" /locus_tag="b1157" /gene_synonym="ECK1143; JW5172; ycfE" /pseudo /db_xref="EcoGene:EG11818" /db_xref="GeneID:945722" CDS complement(1209119..1209619) /gene="stfE" /locus_tag="b1157" /gene_synonym="ECK1143; JW5172; ycfE" /note="pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0003882" /db_xref="UniProtKB/Swiss-Prot:P33227" /db_xref="EcoGene:EG11818" /db_xref="GeneID:945722" gene 1209685..1210239 /gene="pinE" /locus_tag="b1158" /gene_synonym="ECK1144; JW1144; pin" /db_xref="EcoGene:EG10737" /db_xref="GeneID:945721" CDS 1209685..1210239 /gene="pinE" /locus_tag="b1158" /gene_synonym="ECK1144; JW1144; pin" /function="membrane; Phage or Prophage Related" /note="inversion of adjacent DNA; at locus of e14 element" /codon_start=1 /transl_table=11 /product="e14 prophage; site-specific DNA recombinase" /protein_id="NP_415676.1" /db_xref="GI:16129121" /db_xref="ASAP:ABE-0003888" /db_xref="UniProtKB/Swiss-Prot:P03014" /db_xref="EcoGene:EG10737" /db_xref="GeneID:945721" /translation="MLIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPG LKKLLRTLSAGDTLVVWKLDRLGRSMRHLVVLVEELRERGINFRSLTDSIDTSTPMGR FFFHVMGALAEMERELIVERTKAGLETARAQGRIGGRRPKLTPEQWAQAGRLIAAGTP RQKVAIIYDVGVSTLYKRFPAGDK" gene 1210346..1211179 /gene="mcrA" /locus_tag="b1159" /gene_synonym="ECK1145; JW1145; rglA" /db_xref="EcoGene:EG10573" /db_xref="GeneID:945727" CDS 1210346..1211179 /gene="mcrA" /locus_tag="b1159" /gene_synonym="ECK1145; JW1145; rglA" /EC_number="3.1.21.-" /function="putative enzyme; Phage or Prophage Related" /note="restriction of DNA at 5-methylcytosine residues; at locus of e14 element" /codon_start=1 /transl_table=11 /product="putative 5-methylcytosine/5-hydroxymethylcytosine-specific restriction nuclease; 5-methylcytosine DNA binding protein" /protein_id="NP_415677.1" /db_xref="GI:16129122" /db_xref="ASAP:ABE-0003891" /db_xref="UniProtKB/Swiss-Prot:P24200" /db_xref="EcoGene:EG10573" /db_xref="GeneID:945727" /translation="MHVFDNNGIELKAECSIGEEDGVYGLILESWGPGDRNKDYNIAL DYIIERLVDSGVSQVVVYLASSSVRKHMHSLDERKIHPGEYFTLIGNSPRDIRLKMCG YQAYFSRTGRKEIPSGNRTKRILINVPGIYSDSFWASIIRGELSELSQPTDDESLLNM RVSKLIKKTLSQPEGSRKPVEVERLQKVYVRDPMVKAWILQQSKGICENCGKNAPFYL NDGNPYLEVHHVIPLSSGGADTTDNCVALCPNCHRELHYSKNAKELIEMLYVNINRLQ K" gene 1211413..1211577 /gene="icdC" /locus_tag="b4519" /gene_synonym="ECK1146; icd; JW5173" /pseudo /db_xref="EcoGene:EG10009" /db_xref="GeneID:4056026" CDS 1211413..1211577 /gene="icdC" /locus_tag="b4519" /gene_synonym="ECK1146; icd; JW5173" /GO_component="GO:0005737 - cytoplasm" /note="pseudogene, isocitrate dehydrogenase C-terminal gene fragment; idcC' is a 54 codon 3' gene fragment created during e14 prophage insertion" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0285040" /db_xref="EcoGene:EG10009" /db_xref="GeneID:4056026" gene complement(1211680..1212003) /gene="iraM" /locus_tag="b1160" /gene_synonym="ECK1147; elb1; elbA; JW1147; ycgW" /db_xref="EcoGene:EG13885" /db_xref="GeneID:945729" CDS complement(1211680..1212003) /gene="iraM" /locus_tag="b1160" /gene_synonym="ECK1147; elb1; elbA; JW1147; ycgW" /codon_start=1 /transl_table=11 /product="RpoS stabilzer during Mg starvation, anti-RssB factor" /protein_id="NP_415678.1" /db_xref="GI:16129123" /db_xref="ASAP:ABE-0003893" /db_xref="UniProtKB/Swiss-Prot:P75987" /db_xref="EcoGene:EG13885" /db_xref="GeneID:945729" /translation="MKWIVIDTVIQPTCGISFSAIWGNMKMIIWYQSTIFLPPGSIFT PVKSGIILKDKEYPITIYHIAPFNKDLWSLLKSSQECPPGESKITNKCLHNSCIIKIC PYGLK" gene complement(1212703..1213107) /gene="ycgX" /locus_tag="b1161" /gene_synonym="ECK1148; JW1148" /db_xref="EcoGene:EG14244" /db_xref="GeneID:945733" CDS complement(1212703..1213107) /gene="ycgX" /locus_tag="b1161" /gene_synonym="ECK1148; JW1148" /codon_start=1 /transl_table=11 /product="DUF1398 family protein" /protein_id="NP_415679.1" /db_xref="GI:16129124" /db_xref="ASAP:ABE-0003897" /db_xref="UniProtKB/Swiss-Prot:P75988" /db_xref="EcoGene:EG14244" /db_xref="GeneID:945733" /translation="MDQVVVFQKMFEQVRKEQNFSWFYSELKHHRIAHYIYYLATDNI RIITHDDTVLLLRGTRNLLKVSTTKNPAKIKEAALLHICGKSTFREYCSTLAGAGVFR WVTDVNHNKRSYYAIDNTLLYIEDVENNKPLI" gene complement(1213328..1214059) /gene="bluR" /locus_tag="b1162" /gene_synonym="ECK1149; JW1149; ycgE" /db_xref="EcoGene:EG13886" /db_xref="GeneID:945735" CDS complement(1213328..1214059) /gene="bluR" /locus_tag="b1162" /gene_synonym="ECK1149; JW1149; ycgE" /function="putative regulator; Not classified" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator" /codon_start=1 /transl_table=11 /product="repressor of blue light-responsive genes" /protein_id="NP_415680.1" /db_xref="GI:16129125" /db_xref="ASAP:ABE-0003900" /db_xref="UniProtKB/Swiss-Prot:P75989" /db_xref="EcoGene:EG13886" /db_xref="GeneID:945735" /translation="MAYYSIGDVAERCGINPVTLRAWQRRYGLLKPQRSEGGHRLFDE EDIQRIEEIKRWISNGVPVGKVKALLETTSQDTEDDWSRLQEEMMSILRMANPAKLRA RIISLGREYPVDQLINHVYLPVRQRLVLDHNTSRIMSSMFDGALIEYAATSLFEMRRK PGKEAILMAWNVEERARLWLEAWRLSLSGWHISVLADPIESPRPELFPTQTLIVWTGM APTRRQNELLQHWGEQGYKVIFHAP" gene complement(1214264..1215475) /gene="bluF" /locus_tag="b1163" /gene_synonym="ECK1150; JW1150; ycgF" /db_xref="EcoGene:EG13887" /db_xref="GeneID:947592" CDS complement(1214264..1215475) /gene="bluF" /locus_tag="b1163" /gene_synonym="ECK1150; JW1150; ycgF" /codon_start=1 /transl_table=11 /product="anti-repressor for YcgE, blue light-responsive; FAD-binding; inactive c-di-GMP phosphodiesterase-like EAL domain protein" /protein_id="NP_415681.1" /db_xref="GI:16129126" /db_xref="ASAP:ABE-0003903" /db_xref="UniProtKB/Swiss-Prot:P75990" /db_xref="EcoGene:EG13887" /db_xref="GeneID:947592" /translation="MLTTLIYRSHIRDDEPVKKIEEMVSIANRRNMQSDVTGILLFNG SHFFQLLEGPEEQVKMIYRAICQDPRHYNIVELLCDYAPARRFGKAGMELFDLRLHER DDVLQAVFDKGTSKFQLTYDDRALQFFRTFVLATEQSTYFEIPAEDSWLFIADGSDKE LDSCALSPTINDHFAFHPIVDPLSRRIIAFEAIVQKNEDSPSAIAVGQRKDGEIYTAD LKSKALAFTMAHALELGDKMISINLLPMTLVNEPDAVSFLLNEIKANALVPEQIIVEF TESEVISRFDEFAEAIKSLKAAGISVAIDHFGAGFAGLLLLSRFQPDRIKISQELITN VHKSGPRQAIIQAIIKCCTSLEIQVSAMGVATPEEWMWLESAGIEMFQGDLFAKAKLN GIPSIAWPEKK" gene 1215789..1216025 /gene="ycgZ" /locus_tag="b1164" /gene_synonym="ECK1151; JW1151" /db_xref="EcoGene:EG14288" /db_xref="GeneID:945885" CDS 1215789..1216025 /gene="ycgZ" /locus_tag="b1164" /gene_synonym="ECK1151; JW1151" /codon_start=1 /transl_table=11 /product="RcsB connector protein for regulation of biofilm and acid-resistance" /protein_id="NP_415682.1" /db_xref="GI:16129127" /db_xref="ASAP:ABE-0003907" /db_xref="UniProtKB/Swiss-Prot:P75991" /db_xref="EcoGene:EG14288" /db_xref="GeneID:945885" /translation="MHQNSVTLDSAGAITRYFAKANLHTQQETLGEIVTEILKDGRNL SRKSLCAKLLCRLEHATGEEEQKHYNALIGLLFE" gene 1216068..1216340 /gene="ymgA" /locus_tag="b1165" /gene_synonym="ECK1152; JW1152" /db_xref="EcoGene:EG14289" /db_xref="GeneID:948991" CDS 1216068..1216340 /gene="ymgA" /locus_tag="b1165" /gene_synonym="ECK1152; JW1152" /codon_start=1 /transl_table=11 /product="RcsB connector protein for regulation of biofilm" /protein_id="NP_415683.1" /db_xref="GI:16129128" /db_xref="ASAP:ABE-0003909" /db_xref="UniProtKB/Swiss-Prot:P75992" /db_xref="EcoGene:EG14289" /db_xref="GeneID:948991" /translation="MKTSDNERIKYEITGQAVLQILRMKINFSLQTLIKQLLVMKSAE EDAFRRDLIDSIIRDFSNSDSGGPNRRTATADNKSMFNGKKINRIH" gene 1216369..1216635 /gene="ariR" /locus_tag="b1166" /gene_synonym="ECK1153; JW1153; ymgB" /db_xref="EcoGene:EG14290" /db_xref="GeneID:945340" CDS 1216369..1216635 /gene="ariR" /locus_tag="b1166" /gene_synonym="ECK1153; JW1153; ymgB" /codon_start=1 /transl_table=11 /product="RcsB connector protein for regulation of biofilm and acid-resistance" /protein_id="NP_415684.1" /db_xref="GI:16129129" /db_xref="ASAP:ABE-0003911" /db_xref="UniProtKB/Swiss-Prot:P75993" /db_xref="EcoGene:EG14290" /db_xref="GeneID:945340" /translation="MLEDTTIHNAITDKALASYFRSSGNLLEEESAVLGQAVTNLMLS GDNVNNKNIILSLIHSLETTSDILKADVIRKTLEIVLRYTADDM" gene 1216748..1216996 /gene="ymgC" /locus_tag="b1167" /gene_synonym="ECK1154; JW1154" /db_xref="EcoGene:EG14291" /db_xref="GeneID:945090" CDS 1216748..1216996 /gene="ymgC" /locus_tag="b1167" /gene_synonym="ECK1154; JW1154" /codon_start=1 /transl_table=11 /product="Blue light, low temperature and stress induced protein" /protein_id="NP_415685.1" /db_xref="GI:16129130" /db_xref="ASAP:ABE-0003915" /db_xref="UniProtKB/Swiss-Prot:P75994" /db_xref="EcoGene:EG14291" /db_xref="GeneID:945090" /translation="MNNSIPERFIFQCALFKNLEREVFMTHGYVDSHIIDQALRLRLK DETSVILSDLYLQILQYIEMHKTTLTDIIINDRESVLS" gene 1217328..1218851 /gene="ycgG" /locus_tag="b1168" /gene_synonym="ECK1155; JW5174" /db_xref="EcoGene:EG13888" /db_xref="GeneID:945738" CDS 1217328..1218851 /gene="ycgG" /locus_tag="b1168" /gene_synonym="ECK1155; JW5174" /function="putative enzyme; Not classified" /note="putative proteases" /codon_start=1 /transl_table=11 /product="putative membrane-anchored cyclic-di-GMP phosphodiesterase" /protein_id="NP_415686.2" /db_xref="GI:90111225" /db_xref="ASAP:ABE-0003918" /db_xref="UniProtKB/Swiss-Prot:P75995" /db_xref="EcoGene:EG13888" /db_xref="GeneID:945738" /translation="MRNTLIPILVAICLFITGVAILNIQLWYSAKAEYLAGARYAANN INHILEEASQATQTAVNIAGKECNLEEQYQLGTEAALKPHLRTIIILKQGIVWCTSLP GNRVLLSRIPVFPDSNLLLAPAIDTVNRLPILLYQNQFADTRILVTISDQHIRGALNV PLKGVRYVLRVADDIIGPTGDVMTLNGHYPYTEKVHSTKYHFTIIFNPPPLFSFYRLI DKGFGILIFILLIACAAAFLLDRYFNKSATPEEILRRAINNGEIVPFYQPVVNGREGT LRGVEVLARWKQPHGGYISPAAFIPLAEKSGLIVPLTQSLMNQVARQMNAIASKLPEG FHIGINFSASHIISPTFVDECLNFRDSFTRRDLNLVLEVTEREPLNVDESLVQRLNIL HENGFVIALDDFGTGYSGLSYLHDLHIDYIKIDHSFVGRVNADPESTRILDCVLDLAR KLSISIVAEGVETKEQLDYLNQNYITFQQGYYFYKPVTYIDLVKIILSKPKVKVVVE" gene 1218983..1219201 /gene="ymgF" /locus_tag="b4520" /gene_synonym="ECK1156; JW1156" /db_xref="EcoGene:EG14341" /db_xref="GeneID:1450253" CDS 1218983..1219201 /gene="ymgF" /locus_tag="b4520" /gene_synonym="ECK1156; JW1156" /GO_component="GO:0016021 - integral to membrane" /codon_start=1 /transl_table=11 /product="inner membrane division septum protein" /protein_id="YP_588447.1" /db_xref="GI:94541105" /db_xref="ASAP:ABE-0285041" /db_xref="UniProtKB/Swiss-Prot:P58034" /db_xref="EcoGene:EG14341" /db_xref="GeneID:1450253" /translation="MNNSNNLDYFTLYIIFSIAFMLITLLVILIAKPSTGLGEVLVTI NLLNALVWLAINLVNRLRERLVNHRDQQ" gene 1219601..1222248 /gene="ycgH" /locus_tag="b4491" /gene_synonym="ECK1157; JW5176; JW5901" /pseudo /db_xref="EcoGene:EG13889" /db_xref="GeneID:2847703" CDS join(1219601..1222174,1222174..1222248) /gene="ycgH" /locus_tag="b4491" /gene_synonym="ECK1157; JW5176; JW5901" /note="pseudogene; putative ATP-binding component of a transport system" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0003921" /db_xref="ASAP:ABE-0003924" /db_xref="ASAP:ABE-0285092" /db_xref="EcoGene:EG13889" /db_xref="GeneID:2847703" gene complement(1222305..1222634) /gene="ymgD" /locus_tag="b1171" /gene_synonym="ECK1158; JW5177" /db_xref="EcoGene:EG14292" /db_xref="GeneID:945732" CDS complement(1222305..1222634) /gene="ymgD" /locus_tag="b1171" /gene_synonym="ECK1158; JW5177" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_415689.2" /db_xref="GI:90111226" /db_xref="ASAP:ABE-0003926" /db_xref="UniProtKB/Swiss-Prot:P0AB46" /db_xref="EcoGene:EG14292" /db_xref="GeneID:945732" /translation="MKKFALLAGLFVFAPMTWAQDYNIKNGLPSETYITCAEANEMAK TDSAQVAEIVAVMGNASVASRDLKIEQSPELSAKVVEKLNQVCAKDPQMLLITAIDDT MRAIGKK" gene complement(1222644..1222988) /gene="ymgG" /locus_tag="b1172" /gene_synonym="ECK4470" /db_xref="EcoGene:EG14415" /db_xref="GeneID:945728" CDS complement(1222644..1222988) /gene="ymgG" /locus_tag="b1172" /gene_synonym="ECK4470" /codon_start=1 /transl_table=11 /product="UPF0757 family protein" /protein_id="NP_415690.5" /db_xref="GI:288551664" /db_xref="ASAP:ABE-0003928" /db_xref="UniProtKB/Swiss-Prot:Q7DFV3" /db_xref="EcoGene:EG14415" /db_xref="GeneID:945728" /translation="MKKKILAFGLISALFCSTPAMADMNRTTKGALLGAGVGLLTGNG VNGVLKGAAVGAGVGAVTEKGRDGKNARKGAKVGAAVGAVTGVLTGNGLEGAIKGAVI GGTGGAILGKMK" gene complement(1222990..1223163) /gene="ymgI" /locus_tag="b4593" /gene_synonym="ECK4403" /db_xref="EcoGene:EG14449" /db_xref="GeneID:5061515" CDS complement(1222990..1223163) /gene="ymgI" /locus_tag="b4593" /gene_synonym="ECK4403" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_001165314.1" /db_xref="GI:145698243" /db_xref="UniProtKB/Swiss-Prot:A5A611" /db_xref="EcoGene:EG14449" /db_xref="GeneID:5061515" /translation="MSYSSFKIILIHVKNIIPIITATLILNYLNNSERSLVKQILIED EIIVCATYLIPDI" gene 1223264..1223449 /gene="ymgJ" /locus_tag="b4594" /gene_synonym="ECK4404" /db_xref="EcoGene:EG14450" /db_xref="GeneID:5061516" CDS 1223264..1223449 /gene="ymgJ" /locus_tag="b4594" /gene_synonym="ECK4404" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_001165315.1" /db_xref="GI:145698244" /db_xref="UniProtKB/Swiss-Prot:A5A612" /db_xref="EcoGene:EG14450" /db_xref="GeneID:5061516" /translation="MSRRYSSATITLVILFCRRPHCRKISVRQYYQKRVIFYPTTLQR TACKKCLFLMRDIIISS" gene 1223564..1223907 /gene="ycgI" /locus_tag="b4521" /gene_synonym="ECK1161; JW1162; ymgH" /pseudo /db_xref="EcoGene:EG13890" /db_xref="GeneID:1450255" CDS join(1223564..1223671,1223671..1223907) /gene="ycgI" /locus_tag="b4521" /gene_synonym="ECK1161; JW1162; ymgH" /note="pseudogene" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0003933" /db_xref="ASAP:ABE-0285042" /db_xref="UniProtKB/Swiss-Prot:P76000" /db_xref="EcoGene:EG13890" /db_xref="GeneID:1450255" gene complement(1224279..1224545) /gene="minE" /locus_tag="b1174" /gene_synonym="ECK1162; JW1163; minB" /db_xref="EcoGene:EG10598" /db_xref="GeneID:945740" CDS complement(1224279..1224545) /gene="minE" /locus_tag="b1174" /gene_synonym="ECK1162; JW1163; minB" /function="factor; Cell division" /GO_component="GO:0005737 - cytoplasm" /note="cell division topological specificity factor, reverses MinC inhibition of ftsZ ring formation" /codon_start=1 /transl_table=11 /product="cell division topological specificity factor" /protein_id="NP_415692.1" /db_xref="GI:16129137" /db_xref="ASAP:ABE-0003935" /db_xref="UniProtKB/Swiss-Prot:P0A734" /db_xref="EcoGene:EG10598" /db_xref="GeneID:945740" /translation="MALLDFFLSRKKNTANIAKERLQIIVAERRRSDAEPHYLPQLRK DILEVICKYVQIDPEMVTVQLEQKDGDISILELNVTLPEAEELK" gene complement(1224549..1225361) /gene="minD" /locus_tag="b1175" /gene_synonym="ECK1163; JW1164; minB" /db_xref="EcoGene:EG10597" /db_xref="GeneID:945741" CDS complement(1224549..1225361) /gene="minD" /locus_tag="b1175" /gene_synonym="ECK1163; JW1164; minB" /function="enzyme; Cell division" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="cell division inhibitor, a membrane ATPase, activates minC" /codon_start=1 /transl_table=11 /product="inhibitor of FtsZ ring polymerization; chromosome-membrane tethering protein; membrane ATPase of the MinCDEE system" /protein_id="NP_415693.1" /db_xref="GI:16129138" /db_xref="ASAP:ABE-0003938" /db_xref="UniProtKB/Swiss-Prot:P0AEZ3" /db_xref="EcoGene:EG10597" /db_xref="GeneID:945741" /translation="MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLR NLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGV AKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGIL ASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVL RASNQGEPVILDINADAGKAYADTVERLLGEERPFRFIEEEKKGFLKRLFGG" gene complement(1225385..1226080) /gene="minC" /locus_tag="b1176" /gene_synonym="ECK1164; JW1165; minB" /db_xref="EcoGene:EG10596" /db_xref="GeneID:945744" CDS complement(1225385..1226080) /gene="minC" /locus_tag="b1176" /gene_synonym="ECK1164; JW1165; minB" /function="factor; Cell division" /GO_component="GO:0005737 - cytoplasm" /note="cell division inhibitor, inhibits ftsZ ring formation" /codon_start=1 /transl_table=11 /product="inhibitor of FtsZ ring polymerization" /protein_id="NP_415694.1" /db_xref="GI:16129139" /db_xref="ASAP:ABE-0003941" /db_xref="UniProtKB/Swiss-Prot:P18196" /db_xref="EcoGene:EG10596" /db_xref="GeneID:945744" /translation="MSNTPIELKGSSFTLSVVHLHEAEPKVIHQALEDKIAQAPAFLK HAPVVLNVSALEDPVNWSAMHKAVSATGLRVIGVSGCKDAQLKAEIEKMGLPILTEGK EKAPRPAPTPQAPAQNTTPVTKTRLIDTPVRSGQRIYAPQCDLIVTSHVSAGAELIAD GNIHVYGMMRGRALAGASGDRETQIFCTNLMAELVSIAGEYWLSDQIPAEFYGKAARL QLVENALTVQPLN" gene 1226600..1226968 /gene="ycgJ" /locus_tag="b1177" /gene_synonym="ECK1165; JW1166" /db_xref="EcoGene:EG13891" /db_xref="GeneID:946155" CDS 1226600..1226968 /gene="ycgJ" /locus_tag="b1177" /gene_synonym="ECK1165; JW1166" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_415695.1" /db_xref="GI:16129140" /db_xref="ASAP:ABE-0003946" /db_xref="UniProtKB/Swiss-Prot:P76001" /db_xref="EcoGene:EG13891" /db_xref="GeneID:946155" /translation="MNMMRIFYIGLSGVGMMFSSMASGNDAGGLQSPACGVVCDPYIC VNSDGISPELTRKYLGEKAAENLQSLQGYDPSEFTFANGVFCDVKEKLCRDDRYFGVD GKRSGKINQTTTKMLFMCRE" gene complement(1227071..1227472) /gene="pliG" /locus_tag="b1178" /gene_synonym="ECK1166; JW1167; ycgK" /db_xref="EcoGene:EG13892" /db_xref="GeneID:946963" CDS complement(1227071..1227472) /gene="pliG" /locus_tag="b1178" /gene_synonym="ECK1166; JW1167; ycgK" /codon_start=1 /transl_table=11 /product="periplasmic inhibitor of g-type lysozyme" /protein_id="NP_415696.1" /db_xref="GI:16129141" /db_xref="ASAP:ABE-0003948" /db_xref="UniProtKB/Swiss-Prot:P76002" /db_xref="EcoGene:EG13892" /db_xref="GeneID:946963" /translation="MKIKSIRKAVLLLALLTSTSFAAGKNVNVEFRKGHSSAQYSGEI KGYDYDTYTFYAKKGQKVHVSISNEGADTYLFGPGIDDSVDLSRYSPELDSHGQYSLP ASGKYELRVLQTRNDARKNKTKKYNVDIQIK" gene 1227714..1228007 /gene="ycgL" /locus_tag="b1179" /gene_synonym="ECK1167; JW1168" /db_xref="EcoGene:EG13893" /db_xref="GeneID:946226" CDS 1227714..1228007 /gene="ycgL" /locus_tag="b1179" /gene_synonym="ECK1167; JW1168" /codon_start=1 /transl_table=11 /product="UPF0745 family protein" /protein_id="NP_415697.4" /db_xref="GI:308209620" /db_xref="ASAP:ABE-0003954" /db_xref="UniProtKB/Swiss-Prot:P0AB43" /db_xref="EcoGene:EG13893" /db_xref="GeneID:946226" /translation="MFCVIYRSSKRDQTYLYVEKKDDFSRVPEELMKGFGQPQLAMIL PLDGRKKLVNADIEKVKQALTEQGYYLQLPPPPEDLLKQHLSVMGQKTDDTNK" gene 1228079..1228738 /gene="ycgM" /locus_tag="b1180" /gene_synonym="ECK1168; JW1169" /db_xref="EcoGene:EG13894" /db_xref="GeneID:946115" CDS 1228079..1228738 /gene="ycgM" /locus_tag="b1180" /gene_synonym="ECK1168; JW1169" /function="putative enzyme; Not classified" /note="putative isomerase" /codon_start=1 /transl_table=11 /product="putative isomerase/hydrolase" /protein_id="NP_415698.1" /db_xref="GI:16129143" /db_xref="ASAP:ABE-0003957" /db_xref="UniProtKB/Swiss-Prot:P76004" /db_xref="EcoGene:EG13894" /db_xref="GeneID:946115" /translation="MYQHHNWQGALLDYPVSKVVCVGSNYAKHIKEMGSAVPEEPVLF IKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDL TLRDVQGKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLSLSVNGEQRQQG TTADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHSLTTRV L" gene 1228815..1229276 /gene="ycgN" /locus_tag="b1181" /gene_synonym="ECK1169; JW5180" /db_xref="EcoGene:EG13895" /db_xref="GeneID:945804" CDS 1228815..1229276 /gene="ycgN" /locus_tag="b1181" /gene_synonym="ECK1169; JW5180" /codon_start=1 /transl_table=11 /product="UPF0153 family cysteine cluster protein" /protein_id="NP_415699.5" /db_xref="GI:145698245" /db_xref="ASAP:ABE-0003960" /db_xref="UniProtKB/Swiss-Prot:P0A8L5" /db_xref="EcoGene:EG13895" /db_xref="GeneID:945804" /translation="MAEHLMSDVPFWQSKTLDEMSDAEWESLCDGCGQCCLHKLMDED TDEIYFTNVACRQLNIKTCQCRNYERRFEFEPDCIKLTRENLPTFEWLPMTCAYRLLA EGKDLPAWHPLLTGSKAAMHGERISVRHIAVKESEVIDWQDHILNKPDWAQ" gene complement(1229483..1230394) /gene="hlyE" /locus_tag="b1182" /gene_synonym="clyA; ECK1170; hpr; JW5181; sheA; ycgD" /db_xref="EcoGene:EG13243" /db_xref="GeneID:945745" CDS complement(1229483..1230394) /gene="hlyE" /locus_tag="b1182" /gene_synonym="clyA; ECK1170; hpr; JW5181; sheA; ycgD" /function="phenotype; Not classified" /GO_component="GO:0005576 - extracellular region" /codon_start=1 /transl_table=11 /product="hemolysin E" /protein_id="NP_415700.4" /db_xref="GI:162135899" /db_xref="ASAP:ABE-0003962" /db_xref="UniProtKB/Swiss-Prot:P77335" /db_xref="EcoGene:EG13243" /db_xref="GeneID:945745" /translation="MTEIVADKTVEVVKNAIETADGALDLYNKYLDQVIPWQTFDETI KELSRFKQEYSQAASVLVGDIKTLLMDSQDKYFEATQTVYEWCGVATQLLAAYILLFD EYNEKKASAQKDILIKVLDDGITKLNEAQKSLLVSSQSFNNASGKLLALDSQLTNDFS EKSSYFQSQVDKIRKEAYAGAAAGVVAGPFGLIISYSIAAGVVEGKLIPELKNKLKSV QNFFTTLSNTVKQANKDIDAAKLKLTTEIAAIGEIKTETETTRFYVDYDDLMLSLLKE AAKKMINTCNEYQKRHGKKTLFEVPEV" gene 1230767..1231186 /gene="umuD" /locus_tag="b1183" /gene_synonym="ECK1171; JW1172" /db_xref="EcoGene:EG11057" /db_xref="GeneID:945746" CDS 1230767..1231186 /gene="umuD" /locus_tag="b1183" /gene_synonym="ECK1171; JW1172" /EC_number="3.4.21.-" /function="putative enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006281 - DNA repair; GO:0006261 - DNA-dependent DNA replication; GO:0009432 - SOS response; GO:0006350 - transcription" /note="SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC" /codon_start=1 /transl_table=11 /product="translesion error-prone DNA polymerase V subunit; RecA-activated auto-protease" /protein_id="NP_415701.1" /db_xref="GI:16129146" /db_xref="ASAP:ABE-0003974" /db_xref="UniProtKB/Swiss-Prot:P0AG11" /db_xref="EcoGene:EG11057" /db_xref="GeneID:945746" /translation="MLFIKPADLREIVTFPLFSDLVQCGFPSPAADYVEQRIDLNQLL IQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQLR PTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAMR" gene 1231186..1232454 /gene="umuC" /locus_tag="b1184" /gene_synonym="ECK1172; JW1173; uvm" /db_xref="EcoGene:EG11056" /db_xref="GeneID:946359" CDS 1231186..1232454 /gene="umuC" /locus_tag="b1184" /gene_synonym="ECK1172; JW1173; uvm" /function="putative enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006281 - DNA repair; GO:0006261 - DNA-dependent DNA replication; GO:0009432 - SOS response" /note="SOS mutagenesis and repair" /codon_start=1 /transl_table=11 /product="translesion error-prone DNA polymerase V subunit; DNA polymerase activity" /protein_id="NP_415702.1" /db_xref="GI:16129147" /db_xref="ASAP:ABE-0003977" /db_xref="UniProtKB/Swiss-Prot:P04152" /db_xref="EcoGene:EG11056" /db_xref="GeneID:946359" /translation="MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEA KALGVKMGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDE AFCDLTGVRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQT GGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF NVVLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYPSMRQAICSYAARAAE KLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIW QAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA GQGIQQQWQMKRAMLSPRYTTRSSDLLRVK" gene complement(1232500..1233030) /gene="dsbB" /locus_tag="b1185" /gene_synonym="dsbX; ECK1173; iarB; JW5182; roxB; ycgA" /db_xref="EcoGene:EG11393" /db_xref="GeneID:946344" CDS complement(1232500..1233030) /gene="dsbB" /locus_tag="b1185" /gene_synonym="dsbX; ECK1173; iarB; JW5182; roxB; ycgA" /function="enzyme; Surface structures" /GO_component="GO:0019861 - flagellum; GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall; GO:0009289 - pilus" /GO_process="GO:0009296 - flagellum assembly; GO:0006457 - protein folding; GO:0042330 - taxis" /note="reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella." /codon_start=1 /transl_table=11 /product="oxidoreductase that catalyzes reoxidation of DsbA protein disulfide isomerase I" /protein_id="NP_415703.3" /db_xref="GI:49176085" /db_xref="ASAP:ABE-0003979" /db_xref="UniProtKB/Swiss-Prot:P0A6M2" /db_xref="EcoGene:EG11393" /db_xref="GeneID:946344" /translation="MLRFLNQCSQGRGAWLLMAFTALALELTALWFQHVMLLKPCVLC IYERCALFGVLGAALIGAIAPKTPLRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFA TCDFMVRFPEWLPLDKWVPQVFVASGDCAERQWDFLGLEMPQWLLGIFIAYLIVAVLV VISQPFKAKKRDLFGR" gene complement(1233176..1234717) /gene="nhaB" /locus_tag="b1186" /gene_synonym="ECK1174; JW1175" /db_xref="EcoGene:EG11392" /db_xref="GeneID:944822" CDS complement(1233176..1234717) /gene="nhaB" /locus_tag="b1186" /gene_synonym="ECK1174; JW1175" /function="transport; Transport of small molecules: Cations" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009268 - response to pH" /note="Na+/H+ antiporter, pH independent" /codon_start=1 /transl_table=11 /product="sodium:proton antiporter" /protein_id="NP_415704.1" /db_xref="GI:16129149" /db_xref="ASAP:ABE-0003984" /db_xref="UniProtKB/Swiss-Prot:P0AFA7" /db_xref="EcoGene:EG11392" /db_xref="GeneID:944822" /translation="MEISWGRALWRNFLGQSPDWYKLALIIFLIVNPLIFLISPFVAG WLLVAEFIFTLAMALKCYPLLPGGLLAIEAVFIGMTSAEHVREEVAANLEVLLLLMFM VAGIYFMKQLLLFIFTRLLLSIRSKMLLSLSFCVAAAFLSAFLDALTVVAVVISVAVG FYGIYHRVASSRTEDTDLQDDSHIDKHYKVVLEQFRGFLRSLMMHAGVGTALGGVMTM VGEPQNLIIAKAAGWHFGDFFLRMSPVTVPVLICGLLTCLLVEKLRWFGYGETLPEKV REVLQQFDDQSRHQRTRQDKIRLIVQAIIGVWLVTALALHLAEVGLIGLSVIILATSL TGVTDEHAIGKAFTESLPFTALLTVFFSVVAVIIDQQLFSPIIQFVLQASEHAQLSLF YIFNGLLSSISDNVFVGTIYINEAKAAMESGAITLKQYELLAVAINTGTNLPSVATPN GQAAFLFLLTSALAPLIRLSYGRMVWMALPYTLVLTLVGLLCVEFTLAPVTEWFMQMG WIATL" gene 1234938..1235657 /gene="fadR" /locus_tag="b1187" /gene_synonym="dec; ECK1175; JW1176; ole; oleR; thdB" /db_xref="EcoGene:EG10281" /db_xref="GeneID:948652" CDS 1234938..1235657 /gene="fadR" /locus_tag="b1187" /gene_synonym="dec; ECK1175; JW1176; ole; oleR; thdB" /function="regulator; Degradation of small molecules: Fatty acids" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0019395 - fatty acid oxidation; GO:0006350 - transcription" /note="negative regulator for fad regulon, and positive activator of fabA" /codon_start=1 /transl_table=11 /product="fatty acid metabolism regulon transcriptional regulator" /protein_id="NP_415705.1" /db_xref="GI:16129150" /db_xref="ASAP:ABE-0003988" /db_xref="UniProtKB/Swiss-Prot:P0A8V6" /db_xref="EcoGene:EG10281" /db_xref="GeneID:948652" /translation="MVIKAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVT RTTLREVLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDNLL SVRTNISTIFIRTAFRQHPDKAQEVLATANEVADHADAFAELDYNIFRGLAFASGNPI YGLILNGMKGLYTRIGRHYFANPEARSLALGFYHKLSALCSEGAHDQVYETVRRYGHE SGEIWHRMQKNLPGDLAIQGR" gene complement(1235709..1237241) /gene="ycgB" /locus_tag="b1188" /gene_synonym="ECK1176; JW1177" /db_xref="EcoGene:EG11516" /db_xref="GeneID:946365" CDS complement(1235709..1237241) /gene="ycgB" /locus_tag="b1188" /gene_synonym="ECK1176; JW1177" /codon_start=1 /transl_table=11 /product="SpoVR family stationary phase protein" /protein_id="NP_415706.1" /db_xref="GI:16129151" /db_xref="ASAP:ABE-0003990" /db_xref="UniProtKB/Swiss-Prot:P29013" /db_xref="EcoGene:EG11516" /db_xref="GeneID:946365" /translation="MATIDSMNKDTTRLSDGPDWTFDLLDVYLAEIDRVAKLYRLDTY PHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNP CIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARKYITEC EERYGVDEVERLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWR TLPKREEEKTVAEARRYPSEPQENLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQK QTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINP YALGFAMFQDIKRICQSPTEEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPK VMRDFRFFTVLDDDRHNYLEISAIHNEEGYREIRNRLSSQYNLSNLEPNIQIWNVDLR GDRSLTLRYIPHNRAPLDRGRKEVLKHVHRLWGFDVMLEQQNEDGSIELLERCPPRMG NL" gene 1237571..1238869 /gene="dadA" /locus_tag="b1189" /gene_synonym="dadR; ECK1177; JW1178" /db_xref="EcoGene:EG11407" /db_xref="GeneID:945752" CDS 1237571..1238869 /gene="dadA" /locus_tag="b1189" /gene_synonym="dadR; ECK1177; JW1178" /EC_number="1.4.99.1" /function="enzyme; Degradation of small molecules: Amino acids" /GO_process="GO:0009063 - cellular amino acid catabolic process" /note="D-amino acid dehydrogenase subunit" /codon_start=1 /transl_table=11 /product="D-amino acid dehydrogenase" /protein_id="NP_415707.1" /db_xref="GI:16129152" /db_xref="ASAP:ABE-0003995" /db_xref="UniProtKB/Swiss-Prot:P0A6J5" /db_xref="EcoGene:EG11407" /db_xref="GeneID:945752" /translation="MRVVILGSGVVGVASAWYLNQAGHEVTVIDREPGAALETSAANA GQISPGYAAPWAAPGVPLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYM ENKGRMVRLAEYSRDCLKALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIAVLEDA GVPYQLLESSRLAEVEPALAEVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKF RFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYS LTIPIAQEDGAPVSTILDETYKIAITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMV VRDLYPRGGHVEQATFWTGLRPMTPDGTPVVGRTRFKNLWLNTGHGTLGWTMACGSGQ LLSDLLSGRTPAIPYEDLSVARYSRGFTPSRPGHLHGAHS" gene 1238879..1239949 /gene="dadX" /locus_tag="b1190" /gene_synonym="alnB; dadB; ECK1178; JW1179; msuA?" /db_xref="EcoGene:EG11408" /db_xref="GeneID:945754" CDS 1238879..1239949 /gene="dadX" /locus_tag="b1190" /gene_synonym="alnB; dadB; ECK1178; JW1179; msuA?" /EC_number="5.1.1.1" /function="enzyme; Degradation of small molecules: Amino acids" /GO_process="GO:0006523 - alanine biosynthetic process; GO:0009063 - cellular amino acid catabolic process" /note="alanine racemase 2, catabolic" /codon_start=1 /transl_table=11 /product="alanine racemase, catabolic, PLP-binding" /protein_id="NP_415708.1" /db_xref="GI:16129153" /db_xref="ASAP:ABE-0003997" /db_xref="UniProtKB/Swiss-Prot:P29012" /db_xref="EcoGene:EG11408" /db_xref="GeneID:945754" /translation="MTRPIQASLDLQALKQNLSIVRQAATHARVWSVVKANAYGHGIE RIWSAIGATDGFALLNLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHS NWQLKALQNARLKAPLDIYLKVNSGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHF AEAEHPDGISGAMARIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPS GQWRDIANTGLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGY PRHAPTGTPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAA AAGTVGYELMCALALRVPVVTV" gene complement(1240335..1242071) /gene="cvrA" /locus_tag="b1191" /gene_synonym="ECK1179; JW5184; ycgO" /db_xref="EcoGene:EG13896" /db_xref="GeneID:945755" CDS complement(1240335..1242071) /gene="cvrA" /locus_tag="b1191" /gene_synonym="ECK1179; JW5184; ycgO" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative cation/proton antiporter" /protein_id="NP_415709.2" /db_xref="GI:90111230" /db_xref="ASAP:ABE-0003999" /db_xref="UniProtKB/Swiss-Prot:P76007" /db_xref="EcoGene:EG13896" /db_xref="GeneID:945755" /translation="MDATTIISLFILGSILVTSSILLSSFSSRLGIPILVIFLAIGML AGVDGVGGIPFDNYPFAYMVSNLALAIILLDGGMRTQASSFRVALGPALSLATLGVLI TSGLTGMMAAWLFNLDLIEGLLIGAIVGSTDAAAVFSLLGGKGLNERVGSTLEIESGS NDPMAVFLTITLIAMIQHHESNISWMFIVDILQQFGLGIVIGLGGGYLLLQMINRIAL PAGLYPLLALSGGILIFSLTTALEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAW LAQIAMFLVLGLLVNPSDLLPIAIPALILSAWMIFFARPLSVFAGLLPFRGFNLRERV FISWVGLRGAVPIILAVFPMMAGLENARLFFNVAFFVVLVSLLLQGTSLSWAAKKAKV VVPPVGRPVSRVGLDIHPENPWEQFVYQLSADKWCVGAALRDLHMPKETRIAALFRDN QLLHPTGSTRLREGDVLCVIGRERDLPALGKLFSQSPPVALDQRFFGDFILEASAKYA DVALIYGLEDGREYRDKQQTLGEIVQQLLGAAPVVGDQVEFAGMIWTVAEKEDNEVLK IGVRVAEEEAES" gene complement(1242166..1243080) /gene="ldcA" /locus_tag="b1192" /gene_synonym="ECK1180; JW1181; ycgQ" /db_xref="EcoGene:EG13898" /db_xref="GeneID:945756" CDS complement(1242166..1243080) /gene="ldcA" /locus_tag="b1192" /gene_synonym="ECK1180; JW1181; ycgQ" /EC_number="3.4.17.13" /function="enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0000270 - peptidoglycan metabolic process" /codon_start=1 /transl_table=11 /product="murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A" /protein_id="NP_415710.1" /db_xref="GI:16129155" /db_xref="ASAP:ABE-0004002" /db_xref="UniProtKB/Swiss-Prot:P76008" /db_xref="EcoGene:EG13898" /db_xref="GeneID:945756" /translation="MSLFHLIAPSGYCIKQHAALRGIQRLTDAGHQVNNVEVIARRCE RFAGTETERLEDLNSLARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLI CGHSDFTAIQCGLLAHGNVITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQ GEGPTCRAEGTLWGGNLAMLISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYH AGILPRQKAIILGSFSGSTPNDYDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVT LPLGAHAILNNTREGTQLTISGHPVLKM" gene 1243180..1243791 /gene="emtA" /locus_tag="b1193" /gene_synonym="ECK1181; JW5821; mltE; sltZ; ycgP" /db_xref="EcoGene:EG13897" /db_xref="GeneID:945655" CDS 1243180..1243791 /gene="emtA" /locus_tag="b1193" /gene_synonym="ECK1181; JW5821; mltE; sltZ; ycgP" /EC_number="3.2.1.-" /function="enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /note="murein transglycosylase E" /codon_start=1 /transl_table=11 /product="lytic murein endotransglycosylase E" /protein_id="NP_415711.2" /db_xref="GI:90111231" /db_xref="ASAP:ABE-0004006" /db_xref="UniProtKB/Swiss-Prot:P0C960" /db_xref="EcoGene:EG13897" /db_xref="GeneID:945655" /translation="MKLRWFAFLIVLLAGCSSKHDYTNPPWNAKVPVQRAMQWMPISQ KAGAAWGVDPQLITAIIAIESGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWSGEP TTSELKNPERNISMGAAYLNILETGPLAGIEDPKVLQYALVVSYANGAGALLRTFSSD RKKAISKINDLDADEFLEHVARNHPAPQAPRYIYKLEQALDAM" gene complement(1243793..1244527) /gene="ycgR" /locus_tag="b1194" /gene_synonym="ECK1182; JW1183" /db_xref="EcoGene:EG13899" /db_xref="GeneID:947609" CDS complement(1243793..1244527) /gene="ycgR" /locus_tag="b1194" /gene_synonym="ECK1182; JW1183" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent" /codon_start=1 /transl_table=11 /product="flagellar velocity braking protein, c-di-GMP-regulated" /protein_id="NP_415712.1" /db_xref="GI:16129157" /db_xref="ASAP:ABE-0004009" /db_xref="UniProtKB/Swiss-Prot:P76010" /db_xref="EcoGene:EG13899" /db_xref="GeneID:947609" /translation="MSHYHEQFLKQNPLAVLGVLRDLHKAAIPLRLSWNGGQLISKLL AITPDKLVLDFGSQAEDNIAVLKAQHITITAETQGAKVEFTVEQLQQSEYLQLPAFIT VPPPTLWFVQRRRYFRISAPLHPPYFCQTKLADNSTLRFRLYDLSLGGMGALLETAKP AELQEGMRFAQIEVNMGQWGVFHFDAQLISISERKVIDGKNETITTPRLSFRFLNVSP TVERQLQRIIFSLEREAREKADKVRD" gene 1244728..1244982 /gene="ymgE" /locus_tag="b1195" /gene_synonym="ECK1183; JW1184; tag" /db_xref="EcoGene:EG14338" /db_xref="GeneID:945760" CDS 1244728..1244982 /gene="ymgE" /locus_tag="b1195" /gene_synonym="ECK1183; JW1184; tag" /note="transglycosylase asociated protein" /codon_start=1 /transl_table=11 /product="UPF0410 family putative inner membrane protein" /protein_id="NP_415713.1" /db_xref="GI:16129158" /db_xref="ASAP:ABE-0004014" /db_xref="UniProtKB/Swiss-Prot:P76011" /db_xref="EcoGene:EG14338" /db_xref="GeneID:945760" /translation="MGIIAWIIFDLIAGIIAKLIMPGRDGGGFFLTCILGIVGAVVGG WLATMFGIGGSISGFNLHSFLVAVVGAILVLGIFRLLRRE" gene 1245160..1245600 /gene="ycgY" /locus_tag="b1196" /gene_synonym="ECK1184; JW1185" /db_xref="EcoGene:EG14275" /db_xref="GeneID:945761" CDS 1245160..1245600 /gene="ycgY" /locus_tag="b1196" /gene_synonym="ECK1184; JW1185" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_415714.1" /db_xref="GI:16129159" /db_xref="ASAP:ABE-0004019" /db_xref="UniProtKB/Swiss-Prot:P76012" /db_xref="EcoGene:EG14275" /db_xref="GeneID:945761" /translation="MIQKINILDSSQSGVKNGADSEAVLAALIEHLELINPSGRLSQN TRSAMLQLREEEWSEFFFWLLNSLECLDYVIINLTPESKKTLMSEHRNNIQVAIDALY SQRRRKSPGDESETLTRRNDAIFGNHVWQTFAQYFPPGLEKPSV" gene complement(1245679..1247376) /gene="treA" /locus_tag="b1197" /gene_synonym="ECK1185; JW1186; osmA" /db_xref="EcoGene:EG11017" /db_xref="GeneID:945757" CDS complement(1245679..1247376) /gene="treA" /locus_tag="b1197" /gene_synonym="ECK1185; JW1186; osmA" /EC_number="3.2.1.28" /function="enzyme; Osmotic adaptation" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006006 - glucose metabolic process; GO:0006970 - response to osmotic stress" /note="trehalase, periplasmic" /codon_start=1 /transl_table=11 /product="periplasmic trehalase" /protein_id="NP_415715.1" /db_xref="GI:16129160" /db_xref="ASAP:ABE-0004021" /db_xref="UniProtKB/Swiss-Prot:P13482" /db_xref="EcoGene:EG11017" /db_xref="GeneID:945757" /translation="MKSPAPSRPQKMALIPACIFLCFAALSVQAEETPVTPQPPDILL GPLFNDVQNAKLFPDQKTFADAVPNSDPLMILADYRMQQNQSGFDLRHFVNVNFTLPK EGEKYVPPEGQSLREHIDGLWPVLTRSTENTEKWDSLLPLPEPYVVPGGRFREVYYWD SYFTMLGLAESGHWDKVADMVANFAHEIDTYGHIPNGNRSYYLSRSQPPFFALMVELL AQHEGDAALKQYLPQMQKEYAYWMDGVENLQAGQQEKRVVKLQDGTLLNRYWDDRDTP RPESWVEDIATAKSNPNRPATEIYRDLRSAAASGWDFSSRWMDNPQQLNTLRTTSIVP VDLNSLMFKMEKILARASKAAGDNAMANQYETLANARQKGIEKYLWNDQQGWYADYDL KSHKVRNQLTAAALFPLYVNAAAKDRANKMATATKTHLLQPGGLNTTSVKSGQQWDAP NGWAPLQWVATEGLQNYGQKEVAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGG GGEYPLQDGFGWTNGVTLKMLDLICPKEQPCDNVPATRPTVKSATTQPSTKEAQPTP" repeat_region 1247658..1247688 /note="REP107 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1247696..1249114) /gene="dhaM" /locus_tag="b1198" /gene_synonym="dhaH; ECK1186; JW5185; ptsD; ycgC" /db_xref="EcoGene:EG12399" /db_xref="GeneID:945749" CDS complement(1247696..1249114) /gene="dhaM" /locus_tag="b1198" /gene_synonym="dhaH; ECK1186; JW5185; ptsD; ycgC" /note="PTS hybrid protein" /codon_start=1 /transl_table=11 /product="putative dihydroxyacetone-specific PTS enzymes: HPr, EI components" /protein_id="NP_415716.4" /db_xref="GI:226524708" /db_xref="ASAP:ABE-0004024" /db_xref="UniProtKB/Swiss-Prot:P37349" /db_xref="EcoGene:EG12399" /db_xref="GeneID:945749" /translation="MVNLVIVSHSSRLGEGVGELARQMLMSDSCKIAIAAGIDDPQNP IGTDAVKVMEAIESVADADHVLVMMDMGSALLSAETALELLAPEIAAKVRLCAAPLVE GTLAATVSAASGADIDKVIFDAMHALEAKREQLGLPSSDTEISDTCPAYDEEARSLAV VIKNRNGLHVRPASRLVYTLSTFNADMLLEKNGKCVTPESINQIALLQVRYNDTLRLI AKGPEAEEALIAFRQLAEDNFGETEEVAPPTLRPVPPVSGKAFYYQPVLCTVQAKSTL TVEEEQDRLRQAIDFTLLDLMTLTAKAEASGLDDIAAIFSGHHTLLDDPELLAAASEL LQHEHCTAEYAWQQVLKELSQQYQQLDDEYLQARYIDVDDLLHRTLVHLTQTKEELPQ FNSPTILLAENIYPSTVLQLDPAVVKGICLSAGSPVSHSALIARELGIGWICQQGEKL YAIQPEETLTLDVKTQRFNRQG" gene complement(1249125..1249757) /gene="dhaL" /locus_tag="b1199" /gene_synonym="dhaK2; ECK1187; JW5186; ptsD; ycgS" /db_xref="EcoGene:EG13900" /db_xref="GeneID:945748" CDS complement(1249125..1249757) /gene="dhaL" /locus_tag="b1199" /gene_synonym="dhaK2; ECK1187; JW5186; ptsD; ycgS" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="dihydroxyacetone kinase, C-terminal domain" /protein_id="NP_415717.1" /db_xref="GI:16129162" /db_xref="ASAP:ABE-0004026" /db_xref="UniProtKB/Swiss-Prot:P76014" /db_xref="EcoGene:EG13900" /db_xref="GeneID:945748" /translation="MSLSRTQIVNWLTRCGDIFSTESEYLTGLDREIGDADHGLNMNR GFSKVVEKLPAIADKDIGFILKNTGMTLLSSVGGASGPLFGTFFIRAAQATQARQSLT LEELYQMFRDGADGVISRGKAEPGDKTMCDVWVPVVESLRQSSEQNLSVPVALEAASS IAESAAQSTITMQARKGRASYLGERSIGHQDPGATSVMFMMQMLALAAKE" gene complement(1249768..1250838) /gene="dhaK" /locus_tag="b1200" /gene_synonym="dhaK1; ECK1188; JW5187; ptsD; ycgT" /db_xref="EcoGene:EG13901" /db_xref="GeneID:945747" CDS complement(1249768..1250838) /gene="dhaK" /locus_tag="b1200" /gene_synonym="dhaK1; ECK1188; JW5187; ptsD; ycgT" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="dihydroxyacetone kinase, PTS-dependent, dihydroxyacetone-binding subunit" /protein_id="NP_415718.6" /db_xref="GI:162135900" /db_xref="ASAP:ABE-0004029" /db_xref="UniProtKB/Swiss-Prot:P76015" /db_xref="EcoGene:EG13901" /db_xref="GeneID:945747" /translation="MKKLINDVQDVLDEQLAGLAKAHPSLTLHQDPVYVTRADAPVAG KVALLSGGGSGHEPMHCGYIGQGMLSGACPGEIFTSPTPDKIFECAMQVDGGEGVLLI IKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDSLYTAGRRGVANTVLIEKLV GAAAERGDSLDACAELGRKLNNQGHSIGIALGACTVPAAGKPSFTLADNEMEFGVGIH GEPGIDRRPFSSLDQTVDEMFDTLLVNGSYHRTLRFWDYQQGSWQEEQQTKQPLQSGD RVIALVNNLGATPLSELYGVYNRLTTRCQQAGLTIERNLIGAYCTSLDMTGFSITLLK VDDETLALWDAPVHTPALNWGK" gene 1251066..1252985 /gene="dhaR" /locus_tag="b1201" /gene_synonym="ECK1189; JW5188; ptsD; ycgU" /db_xref="EcoGene:EG13902" /db_xref="GeneID:945743" CDS 1251066..1252985 /gene="dhaR" /locus_tag="b1201" /gene_synonym="ECK1189; JW5188; ptsD; ycgU" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="dhaKLM operon transcription activator" /protein_id="NP_415719.2" /db_xref="GI:90111234" /db_xref="ASAP:ABE-0004033" /db_xref="UniProtKB/Swiss-Prot:P76016" /db_xref="EcoGene:EG13902" /db_xref="GeneID:945743" /translation="MSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGVTFA SIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSALGF NDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQVLWNWAFCATPLFDSKGRLTGT IALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDGVIS WDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKQAHPLKHVEATFE SQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDDPQT RRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGDAAL AEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITRLDA RRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPALVNN KLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSDLPE HLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTLWRK MKQHGIDAGQFKRRV" gene complement(1253085..1255952) /gene="ycgV" /locus_tag="b1202" /gene_synonym="ECK1190; JW1193" /db_xref="EcoGene:EG13903" /db_xref="GeneID:945767" CDS complement(1253085..1255952) /gene="ycgV" /locus_tag="b1202" /gene_synonym="ECK1190; JW1193" /function="putative factor; Not classified" /GO_component="GO:0009279 - cell outer membrane" /note="putative adhesion and penetration protein" /codon_start=1 /transl_table=11 /product="putative adhesin" /protein_id="NP_415720.1" /db_xref="GI:16129165" /db_xref="ASAP:ABE-0004035" /db_xref="UniProtKB/Swiss-Prot:P76017" /db_xref="EcoGene:EG13903" /db_xref="GeneID:945767" /translation="MGIKQHNGNTKADRLAELKIRSPSIQLIKFGAIGLNAIIFSPLL IAADTGSQYGTNITINDGDRITGDTADPSGNLYGVMTPAGNTPGNINLGNDVTVNVND ASGYAKGIIIQGKNSSLTANRLTVDVVGQTSAIGINLIGDYTHADLGTGSTIKSNDDG IIIGHSSTLTATQFTIENSNGIGLTINDYGTSVDLGSGSKITTDGSTGVYIGGLNGNN ANGAARFTATDLTIDVQGYSAMGINVQKNSVVDLGTNSTIKTNGDNAHGLWSFGQVSA NALTVDVTGAAANGVEVRGGTTTIGADSHISSAQGGGLVTSGSDAIINFTGTAAQRNS IFSGGSYGASAQTATAVVNMQNTDITVDRNGSLALGLWALSGGRITGDSLAITGAAGA RGIYAMTNSQIDLTSDLVIDMSTPDQMAIATQHDDGYAASRINASGRMLINGSVLSKG GLINLDMHPGSVWTGSSLSDNVNGGKLDVAMNNSVWNVTSNSNLDTLALSHSTVDFAS HGSTAGTFATLNVENLSGNSTFIMRADVVGEGNGVNNKGDLLNISGSSAGNHVLAIRN QGSEATTGNEVLTVVKTTDGAASFSASSQVELGGYLYDVRKNGTNWELYASGTVPEPT PNPEPTPAPAQPPIVNPDPTPEPAPTPKPTTTADAGGNYLNVGYLLNYVENRTLMQRM GDLRNQSKDGNIWLRSYGGSLDSFASGKLSGFDMGYSGIQFGGDKRLSDVMPLYVGLY IGSTHASPDYSGGDGTARSDYMGMYASYMAQNGFYSDLVIKASRQKNSFHVLDSQNNG VNANGTANGMSISLEAGQRFNLSPTGYGFYIEPQTQLTYSHQNEMTMKASNGLNIHLN HYESLLGRASMILGYDITAGNSQLNVYVKTGAIREFSGDTEYLLNNSREKYSFKGNGW NNGVGVSAQYNKQHTFYLEADYTQGNLFDQKQVNGGYRFSF" gene complement(1256721..1257812) /gene="ychF" /locus_tag="b1203" /gene_synonym="ECK1191; engD; gtp1; JW1194" /db_xref="EcoGene:EG11404" /db_xref="GeneID:945769" CDS complement(1256721..1257812) /gene="ychF" /locus_tag="b1203" /gene_synonym="ECK1191; engD; gtp1; JW1194" /function="enzyme; Not classified" /note="putative GTP-binding protein" /codon_start=1 /transl_table=11 /product="catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated" /protein_id="NP_415721.1" /db_xref="GI:16129166" /db_xref="ASAP:ABE-0004038" /db_xref="UniProtKB/Swiss-Prot:P0ABU2" /db_xref="EcoGene:EG11404" /db_xref="GeneID:945769" /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVV PMPDPRLDQLAEIVKPQRTLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGH VVRCFENDNIIHVSGKVNPADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKA ELAVLEKCLPQLENAGMLRALDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPY LDQVREIAAKEGSVVVPVCAAVEADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKL LNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQTISFEDFITYKGEQ GAKEAGKMRAEGKDYIVKDGDVMNFLFNV" gene complement(1257929..1258513) /gene="pth" /locus_tag="b1204" /gene_synonym="asuA?; ECK1192; JW1195; rap" /db_xref="EcoGene:EG10785" /db_xref="GeneID:945765" CDS complement(1257929..1258513) /gene="pth" /locus_tag="b1204" /gene_synonym="asuA?; ECK1192; JW1195; rap" /EC_number="3.1.1.29" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /experiment="N-terminus verified by Edman degradation: PMID 1833189" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /codon_start=1 /transl_table=11 /product="peptidyl-tRNA hydrolase" /protein_id="NP_415722.1" /db_xref="GI:16129167" /db_xref="ASAP:ABE-0004043" /db_xref="UniProtKB/Swiss-Prot:P0A7D1" /db_xref="EcoGene:EG10785" /db_xref="GeneID:945765" /translation="MTIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAK FFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGV AKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQK LIDEAIDEAARCTEMWFTDGLTKATNRLHAFKAQ" gene 1258791..1259069 /gene="ychH" /locus_tag="b1205" /gene_synonym="ECK1193; JW1196" /db_xref="EcoGene:EG11533" /db_xref="GeneID:945762" CDS 1258791..1259069 /gene="ychH" /locus_tag="b1205" /gene_synonym="ECK1193; JW1196" /codon_start=1 /transl_table=11 /product="DUF2583 family putative inner membrane protein" /protein_id="NP_415723.1" /db_xref="GI:16129168" /db_xref="ASAP:ABE-0004049" /db_xref="UniProtKB/Swiss-Prot:P0AB49" /db_xref="EcoGene:EG11533" /db_xref="GeneID:945762" /translation="MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAH GAVLSIFVGAILWLAGARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS" gene complement(1259124..1260803) /gene="dauA" /locus_tag="b1206" /gene_synonym="ECK1194; JW5189; ychM" /db_xref="EcoGene:EG12392" /db_xref="GeneID:945770" CDS complement(1259124..1260803) /gene="dauA" /locus_tag="b1206" /gene_synonym="ECK1194; JW5189; ychM" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative sulfate transporter" /codon_start=1 /transl_table=11 /product="C4-dicarboxylic acid transporter" /protein_id="NP_415724.2" /db_xref="GI:90111235" /db_xref="ASAP:ABE-0004051" /db_xref="UniProtKB/Swiss-Prot:P0AFR2" /db_xref="EcoGene:EG12392" /db_xref="GeneID:945770" /translation="MNKIFSSHVMPFRALIDACWKEKYTAARFTRDLIAGITVGIIAI PLAMALAIGSGVAPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGL AGLLVATLLSGIFLILMGLARFGRLIEYIPVSVTLGFTSGIGITIGTMQIKDFLGLQM AHVPEHYLQKVGALFMALPTINVGDAAIGIVTLGILVFWPRLGIRLPGHLPALLAGCA VMGIVNLLGGHVATIGSQFHYVLADGSQGNGIPQLLPQLVLPWDLPNSEFTLTWDSIR TLLPAAFSMAMLGAIESLLCAVVLDGMTGTKHKANSELVGQGLGNIIAPFFGGITATA AIARSAANVRAGATSPISAVIHSILVILALLVLAPLLSWLPLSAMAALLLMVAWNMSE AHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIARMTRLAP VVVDVPDDVLVLRVIGPLFFAAAEGLFTDLESRLEGKRIVILKWDAVPVLDAGGLDAF QRFVKRLPEGCELRVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMADL" gene complement(1260928..1261875) /gene="prs" /locus_tag="b1207" /gene_synonym="dnaR; ECK1195; JW1198; prsA" /db_xref="EcoGene:EG10774" /db_xref="GeneID:945772" CDS complement(1260928..1261875) /gene="prs" /locus_tag="b1207" /gene_synonym="dnaR; ECK1195; JW1198; prsA" /EC_number="2.7.6.1" /function="enzyme; Purine ribonucleotide biosynthesis" /GO_process="GO:0009152 - purine ribonucleotide biosynthetic process" /note="phosphoribosylpyrophosphate synthetase" /codon_start=1 /transl_table=11 /product="phosphoribosylpyrophosphate synthase" /protein_id="NP_415725.1" /db_xref="GI:16129170" /db_xref="ASAP:ABE-0004054" /db_xref="UniProtKB/Swiss-Prot:P0A717" /db_xref="EcoGene:EG10774" /db_xref="GeneID:945772" /translation="MPDMKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQI NENVRGGDIFIIQSTCAPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVR SARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQLN LDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVL VDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAANNLRNSVIDEVVVCDTIP LSDEIKSLPNVRTLTLSGMLAEAIRRISNEESISAMFEH" gene complement(1262026..1262877) /gene="ispE" /locus_tag="b1208" /gene_synonym="ECK1196; ipk; JW1199; ychB" /db_xref="EcoGene:EG11294" /db_xref="GeneID:945774" CDS complement(1262026..1262877) /gene="ispE" /locus_tag="b1208" /gene_synonym="ECK1196; ipk; JW1199; ychB" /EC_number="2.7.1.148" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="4-diphosphocytidyl-2-C-methylerythritol kinase" /protein_id="NP_415726.1" /db_xref="GI:16129171" /db_xref="ASAP:ABE-0004056" /db_xref="UniProtKB/Swiss-Prot:P62615" /db_xref="EcoGene:EG11294" /db_xref="GeneID:945774" /translation="MRTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIE LRDDGDIRLLTPVEGVEHEDNLIVRAARLLMKTAADSGRLPTGSGANISIDKRLPMGG GLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGHAAFAEGVGEIL TPVDPPEKWYLVAHPGVSIPTPVIFKDPELPRNTPKRSIETLLKCEFSNDCEVIARKR FREVDAVLSWLLEYAPSRLTGTGACVFAEFDTESEARQVLEQAPEWLNGFVAKGANLS PLHRAML" gene complement(1262877..1263500) /gene="lolB" /locus_tag="b1209" /gene_synonym="ECK1197; hemM; JW1200; ychC" /db_xref="EcoGene:EG11293" /db_xref="GeneID:945775" CDS complement(1262877..1263500) /gene="lolB" /locus_tag="b1209" /gene_synonym="ECK1197; hemM; JW1200; ychC" /function="enzyme; Biosynthesis of cofactors, carriers: Heme, porphyrin" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="outer-membrane lipoprotein" /codon_start=1 /transl_table=11 /product="lipoprotein localization factor" /protein_id="NP_415727.1" /db_xref="GI:16129172" /db_xref="ASAP:ABE-0004059" /db_xref="UniProtKB/Swiss-Prot:P61320" /db_xref="EcoGene:EG11293" /db_xref="GeneID:945775" /translation="MPLPDFRLIRLLPLAALVLTACSVTTPKGPGKSPDSPQWRQHQQ DVRNLNQYQTRGAFAYISDQQKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGN VQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEI TYSQNGKNWKVVYGGYDTKTQPAMPANMELTDGGQRIKLKMDNWIVK" gene 1263714..1264970 /gene="hemA" /locus_tag="b1210" /gene_synonym="ECK1198; gtrA; JW1201" /db_xref="EcoGene:EG10427" /db_xref="GeneID:945777" CDS 1263714..1264970 /gene="hemA" /locus_tag="b1210" /gene_synonym="ECK1198; gtrA; JW1201" /EC_number="1.2.1.-" /function="enzyme; Biosynthesis of cofactors, carriers: Heme, porphyrin" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0042493 - response to drug" /note="glutamyl-tRNA reductase" /codon_start=1 /transl_table=11 /product="glutamyl tRNA reductase" /protein_id="NP_415728.1" /db_xref="GI:16129173" /db_xref="ASAP:ABE-0004064" /db_xref="UniProtKB/Swiss-Prot:P0A6X1" /db_xref="EcoGene:EG10427" /db_xref="GeneID:945777" /translation="MTLLALGINHKTAPVSLRERVSFSPDKLDQALDSLLAQPMVQGG VVLSTCNRTELYLSVEEQDNLQEALIRWLCDYHNLNEEDLRKSLYWHQDNDAVSHLMR VASGLDSLVLGEPQILGQVKKAFADSQKGHMKASELERMFQKSFSVAKRVRTETDIGA SAVSVAFAACTLARQIFESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRER AQILADEVGAEVIALSDIDERLREADIIISSTASPLPIIGKGMVERALKSRRNQPMLL VDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETSEFMA WLRAQSASETIREYRSQAEQVRDELTAKALAALEQGGDAQAIMQDLAWKLTNRLIHAP TKSLQQAARDGDNERLNILRDSLGLE" gene 1265012..1266094 /gene="prfA" /locus_tag="b1211" /gene_synonym="ECK1199; JW1202; sueB; uar; ups?" /db_xref="EcoGene:EG10761" /db_xref="GeneID:949002" CDS 1265012..1266094 /gene="prfA" /locus_tag="b1211" /gene_synonym="ECK1199; JW1202; sueB; uar; ups?" /function="factor; Proteins - translation and modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="peptide chain release factor RF-1" /protein_id="NP_415729.1" /db_xref="GI:16129174" /db_xref="ASAP:ABE-0004066" /db_xref="UniProtKB/Swiss-Prot:P0A7I0" /db_xref="EcoGene:EG10761" /db_xref="GeneID:949002" /translation="MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQ LSDVSRCFTDWQQVQEDIETAQMMLDDPEMREMAQDELREAKEKSEQLEQQLQVLLLP KDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYK EIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDIN PADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGA RIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME GKLDMLIEPIIQEHQADQLAALSEQE" gene 1266094..1266927 /gene="prmC" /locus_tag="b1212" /gene_synonym="ECK1200; hemK; JW1203" /db_xref="EcoGene:EG12424" /db_xref="GeneID:945779" CDS 1266094..1266927 /gene="prmC" /locus_tag="b1212" /gene_synonym="ECK1200; hemK; JW1203" /EC_number="2.1.1.-" /function="putative enzyme; Biosynthesis of cofactors, carriers: Heme, porphyrin" /note="possible protoporphyrinogen oxidase" /codon_start=1 /transl_table=11 /product="RF-1 and RF-2 N5-glutamine methyltransferase" /protein_id="NP_415730.1" /db_xref="GI:16129175" /db_xref="ASAP:ABE-0004068" /db_xref="UniProtKB/Swiss-Prot:P0ACC1" /db_xref="EcoGene:EG12424" /db_xref="GeneID:945779" /translation="MEYQHWLREAISQLQASESPRRDAEILLEHVTGRGRTFILAFGE TQLTDEQCQQLDALLTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQA LARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKN IHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIV HIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRYY Q" gene 1266924..1267316 /gene="ychQ" /locus_tag="b1213" /gene_synonym="ECK1201; JW1204; sirB2" /db_xref="EcoGene:EG14293" /db_xref="GeneID:945781" CDS 1266924..1267316 /gene="ychQ" /locus_tag="b1213" /gene_synonym="ECK1201; JW1204; sirB2" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent" /codon_start=1 /transl_table=11 /product="SIRB family inner membrane protein" /protein_id="NP_415731.1" /db_xref="GI:16129176" /db_xref="ASAP:ABE-0004071" /db_xref="UniProtKB/Swiss-Prot:Q46755" /db_xref="EcoGene:EG14293" /db_xref="GeneID:945781" /translation="MTSFSTLLSVHLISIALSVGLLTLRFWLRYQKHPQAFARWTRIV PPVVDTLLLLSGIALMAKAHILPFSGQAQWLTEKLFGVIIYIVLGFIALDYRRMHSQQ ARIIAFPLALVVLYIIIKLATTKVPLLG" gene 1267320..1268129 /gene="ychA" /locus_tag="b1214" /gene_synonym="ECK1202; JW1205; sirB1" /db_xref="EcoGene:EG11251" /db_xref="GeneID:945784" CDS 1267320..1268129 /gene="ychA" /locus_tag="b1214" /gene_synonym="ECK1202; JW1205; sirB1" /function="putative enzyme; Not classified" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent" /codon_start=1 /transl_table=11 /product="transglutaminase-like TPR-repeat protein" /protein_id="NP_415732.1" /db_xref="GI:16129177" /db_xref="ASAP:ABE-0004074" /db_xref="UniProtKB/Swiss-Prot:P0AGM5" /db_xref="EcoGene:EG11251" /db_xref="GeneID:945784" /translation="MRSLADFEFNKAPLCEGMILACEAIRRDFPSQDVYDELERLVSL AKEEISQLLPLEEQLEKLIALFYGDWGFKASRGVYRLSDALWLDQVLKNRQGSAVSLG AVLLWVANRLDLPLLPVIFPTQLILRIECPDGEIWLINPFNGESLSEHMLDVWLKGNI SPSAELFYEDLDEADNIEVIRKLLDTLKASLMEENQMELALRTSEALLQFNPEDPYEI RDRGLIYAQLDCEHVALNDLSYFVEQCPEDPISEMIRAQINNIAHKHIVLH" gene 1268165..1269019 /gene="kdsA" /locus_tag="b1215" /gene_synonym="ECK1203; JW1206" /db_xref="EcoGene:EG10518" /db_xref="GeneID:945785" CDS 1268165..1269019 /gene="kdsA" /locus_tag="b1215" /gene_synonym="ECK1203; JW1206" /EC_number="2.5.1.55" /function="enzyme; Surface polysaccharides & antigens" /experiment="N-terminus verified by Edman degradation: PMID 7775423,9298646" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009248 - K antigen biosynthetic process; GO:0009244 - lipopolysaccharide core region biosynthetic process" /note="2-dehydro-3-deoxyphosphooctulonate aldolase" /codon_start=1 /transl_table=11 /product="3-deoxy-D-manno-octulosonate 8-phosphate synthase" /protein_id="NP_415733.1" /db_xref="GI:16129178" /db_xref="ASAP:ABE-0004077" /db_xref="UniProtKB/Swiss-Prot:P0A715" /db_xref="EcoGene:EG10518" /db_xref="GeneID:945785" /translation="MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTV TQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKIFQELKQTFGVKIITDVHEPSQA QPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRR AQVAELARAGMAVGLAGLFIEAHPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKG FEELDTSK" gene complement(1269168..1269275) /gene="ldrA" /locus_tag="b4419" /gene_synonym="ECK1204; JW5957" /db_xref="EcoGene:EG14403" /db_xref="GeneID:2847733" CDS complement(1269168..1269275) /gene="ldrA" /locus_tag="b4419" /gene_synonym="ECK1204; JW5957" /note="small toxic polypeptide" /codon_start=1 /transl_table=11 /product="toxic polypeptide, small" /protein_id="YP_025297.1" /db_xref="GI:49176087" /db_xref="ASAP:ABE-0047280" /db_xref="UniProtKB/Swiss-Prot:Q6BF86" /db_xref="EcoGene:EG14403" /db_xref="GeneID:2847733" /translation="MTLAQFAMIFWHDLAAPILAGIITAAIVSWWRNRK" gene 1269323..1269389 /gene="rdlA" /locus_tag="b4420" /gene_synonym="ECK1205; JWR0229" /db_xref="EcoGene:EG31139" /db_xref="GeneID:2847734" ncRNA 1269323..1269389 /ncRNA_class="antisense_RNA" /gene="rdlA" /locus_tag="b4420" /gene_synonym="ECK1205; JWR0229" /product="sRNA antisense regulator affects LdrA translation; proposed addiction module in LDR-A repeat, with toxic peptide LdrA" /note="antisense RNA, trans-acting regulator of ldrA translation" /function="component of addiction module" /db_xref="ASAP:ABE-0047243" /db_xref="EcoGene:EG31139" /db_xref="GeneID:2847734" gene complement(1269703..1269810) /gene="ldrB" /locus_tag="b4421" /gene_synonym="ECK1206; JW5958" /db_xref="EcoGene:EG14404" /db_xref="GeneID:2847735" CDS complement(1269703..1269810) /gene="ldrB" /locus_tag="b4421" /gene_synonym="ECK1206; JW5958" /note="small toxic polypeptide" /codon_start=1 /transl_table=11 /product="toxic polypeptide, small" /protein_id="YP_025298.1" /db_xref="GI:49176088" /db_xref="ASAP:ABE-0047281" /db_xref="UniProtKB/Swiss-Prot:Q6BF87" /db_xref="EcoGene:EG14404" /db_xref="GeneID:2847735" /translation="MTLAQFAMTFWHDLAAPILAGIITAAIVGWWRNRK" gene 1269858..1269923 /gene="rdlB" /locus_tag="b4422" /gene_synonym="ECK1207; JWR0230" /db_xref="EcoGene:EG31140" /db_xref="GeneID:2847770" ncRNA 1269858..1269923 /ncRNA_class="antisense_RNA" /gene="rdlB" /locus_tag="b4422" /gene_synonym="ECK1207; JWR0230" /product="sRNA antisense regulator affects LdrB translation; proposed addiction module in LDR-B repeat, with toxic peptide LdrB" /note="antisense RNA, trans-acting regulator of ldrB translation" /function="component of addiction module" /db_xref="ASAP:ABE-0047244" /db_xref="EcoGene:EG31140" /db_xref="GeneID:2847770" gene complement(1270238..1270345) /gene="ldrC" /locus_tag="b4423" /gene_synonym="ECK1208; JW5959" /db_xref="EcoGene:EG14405" /db_xref="GeneID:2847775" CDS complement(1270238..1270345) /gene="ldrC" /locus_tag="b4423" /gene_synonym="ECK1208; JW5959" /note="small toxic polypeptide" /codon_start=1 /transl_table=11 /product="toxic polypeptide, small" /protein_id="YP_025299.1" /db_xref="GI:49176089" /db_xref="ASAP:ABE-0047282" /db_xref="UniProtKB/Swiss-Prot:Q6BF86" /db_xref="EcoGene:EG14405" /db_xref="GeneID:2847775" /translation="MTLAQFAMIFWHDLAAPILAGIITAAIVSWWRNRK" gene 1270393..1270460 /gene="rdlC" /locus_tag="b4424" /gene_synonym="ECK1209; JWR0231" /db_xref="EcoGene:EG31141" /db_xref="GeneID:2847680" ncRNA 1270393..1270460 /ncRNA_class="antisense_RNA" /gene="rdlC" /locus_tag="b4424" /gene_synonym="ECK1209; JWR0231" /product="sRNA antisense regulator affects LdrC translation; proposed addiction module in LDR-C repeat, with toxic peptide LdrC" /note="antisense RNA, trans-acting regulator of ldrC translation" /function="component of addiction module" /db_xref="ASAP:ABE-0047245" /db_xref="EcoGene:EG31141" /db_xref="GeneID:2847680" gene complement(1270749..1271849) /gene="chaA" /locus_tag="b1216" /gene_synonym="ECK1210; JW1207" /db_xref="EcoGene:EG11753" /db_xref="GeneID:945790" CDS complement(1270749..1271849) /gene="chaA" /locus_tag="b1216" /gene_synonym="ECK1210; JW1207" /function="transport; Transport of small molecules: Cations" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="sodium-calcium/proton antiporter" /codon_start=1 /transl_table=11 /product="calcium/sodium:proton antiporter" /protein_id="NP_415734.1" /db_xref="GI:16129179" /db_xref="ASAP:ABE-0004082" /db_xref="UniProtKB/Swiss-Prot:P31801" /db_xref="EcoGene:EG11753" /db_xref="GeneID:945790" /translation="MSNAQEAVKTRHKETSLIFPVLALVVLFLWGSSQTLPVVIAINL LALIGILSSAFSVVRHADVLAHRLGEPYGSLILSLSVVILEVSLISALMATGDAAPTL MRDTLYSIIMIVTGGLVGFSLLLGGRKFATQYMNLFGIKQYLIALFPLAIIVLVFPMA LPAANFSTGQALLVALISAAMYGVFLLIQTKTHQSLFVYEHEDDSDDDDPHHGKPSAH SSLWHAIWLIIHLIAVIAVTKMNASSLETLLDSMNAPVAFTGFLVALLILSPEGLGAL KAVLNNQVQRAMNLFFGSVLATISLTVPVVTLIAFMTGNELQFALGAPEMVVMVASLV LCHISFSTGRTNVLNGAAHLALFAAYLMTIFA" gene 1272119..1272349 /gene="chaB" /locus_tag="b1217" /gene_synonym="ECK1211; JW1208" /db_xref="EcoGene:EG12402" /db_xref="GeneID:945792" CDS 1272119..1272349 /gene="chaB" /locus_tag="b1217" /gene_synonym="ECK1211; JW1208" /function="regulator; Transport of small molecules: Cations" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="cation transport regulator" /protein_id="NP_415735.1" /db_xref="GI:16129180" /db_xref="ASAP:ABE-0004087" /db_xref="UniProtKB/Swiss-Prot:P0AE63" /db_xref="EcoGene:EG12402" /db_xref="GeneID:945792" /translation="MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRD DASREETAHKVAWAAVKHEYAKGDDDKWHKKS" gene 1272507..1273202 /gene="chaC" /locus_tag="b1218" /gene_synonym="ECK1212; JW1209" /db_xref="EcoGene:EG12403" /db_xref="GeneID:945793" CDS 1272507..1273202 /gene="chaC" /locus_tag="b1218" /gene_synonym="ECK1212; JW1209" /function="transport; Transport of small molecules: Cations" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="cation transport regulator" /protein_id="NP_415736.2" /db_xref="GI:145698247" /db_xref="ASAP:ABE-0004089" /db_xref="UniProtKB/Swiss-Prot:P39163" /db_xref="EcoGene:EG12403" /db_xref="GeneID:945793" /translation="MITRDFLMNADCKTAFGAIEESLLWSAEQRAASLAATLACRPDE GPVWIFGYGSLMWNPALEFTESCTGTLVGWHRAFCLRLTAGRGTAHQPGRMLALKEGG RTTGVAYRLPEETLEQELTLLWKREMITGCYLPTWCQLDLDDGRTVNAIVFIMDPRHP EYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKLGMQDDGLNDLLVSVKKLLA ENFPDGVLRPGFA" gene complement(1273246..1273599) /gene="ychN" /locus_tag="b1219" /gene_synonym="ECK1213; JW1210" /db_xref="EcoGene:EG12404" /db_xref="GeneID:945794" CDS complement(1273246..1273599) /gene="ychN" /locus_tag="b1219" /gene_synonym="ECK1213; JW1210" /codon_start=1 /transl_table=11 /product="putative sulfur relay protein" /protein_id="NP_415737.1" /db_xref="GI:16129182" /db_xref="ASAP:ABE-0004091" /db_xref="UniProtKB/Swiss-Prot:P0AB52" /db_xref="EcoGene:EG12404" /db_xref="GeneID:945794" /translation="MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSD AVTAGLRGQKPGEGYNIQQMLEILTAQNVPVKLCKTCTDGRGISTLPLIDGVEIGTLV ELAQWTLSADKVLTF" gene 1273784..1275178 /gene="ychO" /locus_tag="b1220" /gene_synonym="ECK1214; JW1211; ychP" /db_xref="EcoGene:EG12405" /db_xref="GeneID:945801" CDS 1273784..1275178 /gene="ychO" /locus_tag="b1220" /gene_synonym="ECK1214; JW1211; ychP" /function="putative factor; Not classified" /note="conserved protein, invasin-like" /codon_start=1 /transl_table=11 /product="putative invasin" /protein_id="NP_415738.2" /db_xref="GI:145698248" /db_xref="ASAP:ABE-0004095" /db_xref="UniProtKB/Swiss-Prot:P39165" /db_xref="EcoGene:EG12405" /db_xref="GeneID:945801" /translation="MSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLP DLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHV ESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDNGLVSNV GVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLSANFYQPFAAWHEQT ATQEQRMARGYDLTARMRMPFYQHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGL NYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRY DNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQ ILSLTPGAQANSAEGWTLIMPDWQNGEGASNHWRLSVVVEDNQGQRVSSNEITLTLVE PFDALSNDELRWEP" gene complement(1275179..1275829) /gene="narL" /locus_tag="b1221" /gene_synonym="ECK1215; frdR; JW1212" /db_xref="EcoGene:EG10643" /db_xref="GeneID:945795" CDS complement(1275179..1275829) /gene="narL" /locus_tag="b1221" /gene_synonym="ECK1215; frdR; JW1212" /function="regulator; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0009061 - anaerobic respiration; GO:0006350 - transcription" /note="pleiotrophic regulation of anaerobic respiration: response regulator for nar, frd, dms and tor genes" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with NarX" /protein_id="NP_415739.1" /db_xref="GI:16129184" /db_xref="ASAP:ABE-0004097" /db_xref="UniProtKB/Swiss-Prot:P0AF28" /db_xref="EcoGene:EG10643" /db_xref="GeneID:945795" /translation="MSNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQG IELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRG ADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRE RDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF" gene complement(1275822..1277618) /gene="narX" /locus_tag="b1222" /gene_synonym="ECK1216; frdR; JW1213; narR" /db_xref="EcoGene:EG10646" /db_xref="GeneID:945788" CDS complement(1275822..1277618) /gene="narX" /locus_tag="b1222" /gene_synonym="ECK1216; frdR; JW1213; narR" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration; GO:0006464 - protein modification process" /note="nitrate/nitrate sensor, histidine protein kinase acts on NarL regulator" /codon_start=1 /transl_table=11 /product="sensory histidine kinase in two-component regulatory system with NarL" /protein_id="NP_415740.1" /db_xref="GI:16129185" /db_xref="ASAP:ABE-0004099" /db_xref="UniProtKB/Swiss-Prot:P0AFA2" /db_xref="EcoGene:EG10646" /db_xref="GeneID:945788" /translation="MLKRCLSPLTLVNQVALIVLLSTAIGLAGMAVSGWLVQGVQGSA HAINKAGSLRMQSYRLLAAVPLSEKDKPLIKEMEQTAFSAELTRAAERDGQLAQLQGL QDYWRNELIPALMRAQNRETVSADVSQFVAGLDQLVSGFDRTTEMRIETVVLVHRVMA VFMALLLVFTIIWLRARLLQPWRQLLAMASAVSHRDFTQRANISGRNEMAMLGTALNN MSAELAESYAVLEQRVQEKTAGLEHKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQ NLTLLRDIELRVYDTDDEENHQEFTCQPDMTCDDKGCQLCPRGVLPVGDRGTTLKWRL ADSHTQYGILLATLPQGRHLSHDQQQLVDTLVEQLTATLALDRHQERQQQLIVMEERA TIARELHDSIAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWAQLRELLT TFRLQLTEPGLRPALEASCEEYSAKFGFPVKLDYQLPPRLVPSHQAIHLLQIAREALS NALKHSQASEVVVTVAQNDNQVKLTVQDNGCGVPENAIRSNHYGMIIMRDRAQSLRGD CRVRRRESGGTEVVVTFIPEKTFTDVQGDTHE" gene 1277957..1279348 /gene="narK" /locus_tag="b1223" /gene_synonym="ECK1217; JW1214" /db_xref="EcoGene:EG10642" /db_xref="GeneID:945783" CDS 1277957..1279348 /gene="narK" /locus_tag="b1223" /gene_synonym="ECK1217; JW1214" /function="transport; Transport of small molecules: Anions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006807 - nitrogen compound metabolic process" /note="nitrite extrusion protein" /codon_start=1 /transl_table=11 /product="nitrate/nitrite transporter" /protein_id="NP_415741.1" /db_xref="GI:16129186" /db_xref="ASAP:ABE-0004111" /db_xref="UniProtKB/Swiss-Prot:P10903" /db_xref="EcoGene:EG10642" /db_xref="GeneID:945783" /translation="MSHSSAPERATGAVITDWRPEDPAFWQQRGQRIASRNLWISVPC LLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPIFGGR RWTAFSTGILIIPCVWLGFAVQDTSTPYSVFIIISLLCGFAGANFASSMANISFFFPK QKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAVFGSQGVKQPDGTELYLANASWI WVPFLAIFTIAAWFGMNDLATSKASIKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAG FAMLSKTQFPDVQILQYAFFGPFIGALARSAGGALSDRLGGTRVTLVNFILMAIFSGL LFLTLPTDGQGGSFMAFFAVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSD ERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACV VITWAVYGRHSKK" gene 1279864..1283607 /gene="narG" /locus_tag="b1224" /gene_synonym="chlC; ECK1218; JW1215; narC" /db_xref="EcoGene:EG10638" /db_xref="GeneID:945782" CDS 1279864..1283607 /gene="narG" /locus_tag="b1224" /gene_synonym="chlC; ECK1218; JW1215; narC" /EC_number="1.7.99.4" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration" /codon_start=1 /transl_table=11 /product="nitrate reductase 1, alpha subunit" /protein_id="NP_415742.1" /db_xref="GI:16129187" /db_xref="ASAP:ABE-0004119" /db_xref="UniProtKB/Swiss-Prot:P09152" /db_xref="EcoGene:EG10638" /db_xref="GeneID:945782" /translation="MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDK IVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWY LYSANRLKYPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVR SSWQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFY DWYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGT KTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRY TDMPMLVMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIG FRWGEKGKWNLEQRDGKTGEETELQLSLLGSQDEIAEVGFPYFGGDGTEHFNKVELEN VLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDDVKAYTPAWA EQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCG CVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETV TAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAPQLGTNPLTIAGEAEKAGMNPVD YTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQ GKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDM NTSDMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEVCVGHLGKETDIVTLPIQHD SAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERDYPATYERFTSIGPLMEKIGNGG KGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAW AALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNV HELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKEVIGQKSNGNQEKALN FLTPHQKWGIHSTYSDNLLMLTLGRGGPVVWLSEADAKDLGIADNDWIEVFNSNGALT ARAVVSQRVPAGMTMMYHAQERIVNLPGSEITQQRGGIHNSVTRITPKPTHMIGGYAH LAYGFNYYGTVGSNRDEFVVVRKMKNIDWLDGEGNDQVQESVK" gene 1283604..1285142 /gene="narH" /locus_tag="b1225" /gene_synonym="chlC; ECK1219; JW1216" /db_xref="EcoGene:EG10639" /db_xref="GeneID:945780" CDS 1283604..1285142 /gene="narH" /locus_tag="b1225" /gene_synonym="chlC; ECK1219; JW1216" /EC_number="1.7.99.4" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /experiment="N-terminus verified by Edman degradation: PMID 3053688" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration" /note="nitrate reductase 1, beta subunit" /codon_start=1 /transl_table=11 /product="nitrate reductase 1, beta (Fe-S) subunit" /protein_id="NP_415743.1" /db_xref="GI:16129188" /db_xref="ASAP:ABE-0004121" /db_xref="UniProtKB/Swiss-Prot:P11349" /db_xref="EcoGene:EG10639" /db_xref="GeneID:945780" /translation="MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGVEYAWFNNV ETKPGQGFPTDWENQEKYKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYE PFDFDYQNLHTAPEGSKSQPIARPRSLITGERMAKIEKGPNWEDDLGGEFDKLAKDKN FDNIQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCR GWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYD ADAIERAASTENEKDLYQRQLDVFLDPNDPKVIEQAIKDGIPLSVIEAAQQSPVYKMA MEWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLAN LLTAGDTKPVLRALKRMLAMRHYKRAETVDGKVDTRALEEVGLTEAQAQEMYRYLAIA NYEDRFVVPSSHRELAREAFPEKNGCGFTFGDGCHGSDTKFNLFNSRRIDAIDVTSKT EPHP" gene 1285139..1285849 /gene="narJ" /locus_tag="b1226" /gene_synonym="ECK1220; JW1217" /db_xref="EcoGene:EG10641" /db_xref="GeneID:945807" CDS 1285139..1285849 /gene="narJ" /locus_tag="b1226" /gene_synonym="ECK1220; JW1217" /EC_number="1.7.99.4" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /experiment="N-terminus verified by Edman degradation: PMID 2832376" /GO_process="GO:0009061 - anaerobic respiration; GO:0006457 - protein folding" /note="nitrate reductase 1, delta subunit, assembly function" /codon_start=1 /transl_table=11 /product="molybdenum-cofactor-assembly chaperone delta subunit of nitrate reductase 1" /protein_id="NP_415744.1" /db_xref="GI:16129189" /db_xref="ASAP:ABE-0004123" /db_xref="UniProtKB/Swiss-Prot:P0AF26" /db_xref="EcoGene:EG10641" /db_xref="GeneID:945807" /translation="MIELVIVSRLLEYPDAALWQHQQEMFEAIAASKNLPKEDAHALG IFLRDLTTMDPLDAQAQYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLLAQYEQHG LQLNSRELPDHLPLYLEYLAQLPQSEAVEGLKDIAPILALLSARLQQRESRYAVLFDL LLKLANTAIDSDKVAEKIADEARDDTPQALDAVWEEEQVKFFADKGCGDSAITAHQRR FAGAVAPQYLNITTGGQH" gene 1285849..1286526 /gene="narI" /locus_tag="b1227" /gene_synonym="chlI; ECK1221; JW1218" /db_xref="EcoGene:EG10640" /db_xref="GeneID:945808" CDS 1285849..1286526 /gene="narI" /locus_tag="b1227" /gene_synonym="chlI; ECK1221; JW1218" /EC_number="1.7.99.4" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /experiment="N-terminus verified by Edman degradation: PMID 3053688" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration; GO:0017004 - cytochrome complex assembly" /note="nitrate reductase 1, cytochrome b(NR), gamma subunit" /codon_start=1 /transl_table=11 /product="nitrate reductase 1, gamma (cytochrome b(NR)) subunit" /protein_id="NP_415745.1" /db_xref="GI:16129190" /db_xref="ASAP:ABE-0004125" /db_xref="UniProtKB/Swiss-Prot:P11350" /db_xref="EcoGene:EG10640" /db_xref="GeneID:945808" /translation="MQFLNMFFFDIYPYIAGAVFLIGSWLRYDYGQYTWRAASSQMLD RKGMNLASNLFHIGILGIFVGHFFGMLTPHWMYEAWLPIEVKQKMAMFAGGASGVLCL IGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLV GWAQSVVTFHGGASQHLDGVAFIFRLHLVLGMTLFLLFPFSRLIHIWSVPVEYLTRKY QLVRARH" repeat_region 1286594..1286665 /note="REP108 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(1287066..1287236) /gene="rttR" /locus_tag="b4425" /gene_synonym="ECK1223; JWR0232; rtT; rtV1" /db_xref="EcoGene:EG31131" /db_xref="GeneID:2847683" ncRNA complement(1287066..1287236) /ncRNA_class="other" /gene="rttR" /locus_tag="b4425" /gene_synonym="ECK1223; JWR0232; rtT; rtV1" /product="rtT sRNA, processed from tyrT transcript" /note="rtT RNA may modulate the stringent response; released from primary tyrT transcript during tRNA processing; encodes putative Tpr protein" /db_xref="ASAP:ABE-0047246" /db_xref="EcoGene:EG31131" /db_xref="GeneID:2847683" gene complement(1287087..1287176) /gene="tpr" /locus_tag="b1229" /gene_synonym="ECK1224; JW1219" /db_xref="EcoGene:EG11016" /db_xref="GeneID:946224" CDS complement(1287087..1287176) /gene="tpr" /locus_tag="b1229" /gene_synonym="ECK1224; JW1219" /function="factor; Basic proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /note="a protamine-like protein" /codon_start=1 /transl_table=11 /product="protamine-like protein" /protein_id="NP_415747.2" /db_xref="GI:145698249" /db_xref="ASAP:ABE-0004131" /db_xref="UniProtKB/Swiss-Prot:P02338" /db_xref="EcoGene:EG11016" /db_xref="GeneID:946224" /translation="MRSFDQGSTRAPARERCRRQRPEGRSAQR" gene complement(1287244..1287328) /gene="tyrV" /locus_tag="b1230" /gene_synonym="ECK1225; JWR0028; tyrTbeta" /db_xref="EcoGene:EG30108" /db_xref="GeneID:945811" tRNA complement(1287244..1287328) /gene="tyrV" /locus_tag="b1230" /gene_synonym="ECK1225; JWR0028; tyrTbeta" /product="tRNA-Tyr" /note="anticodon: GUA" /db_xref="ASAP:ABE-0004134" /db_xref="EcoGene:EG30108" /db_xref="GeneID:945811" gene complement(1287538..1287622) /gene="tyrT" /locus_tag="b1231" /gene_synonym="ECK1226; JWR0029; su; Su-3; Su-4; suIII; supC; supFsupO; tyrTalpha" /db_xref="EcoGene:EG30106" /db_xref="GeneID:945820" tRNA complement(1287538..1287622) /gene="tyrT" /locus_tag="b1231" /gene_synonym="ECK1226; JWR0029; su; Su-3; Su-4; suIII; supC; supFsupO; tyrTalpha" /product="tRNA-Tyr" /note="anticodon: GUA" /db_xref="ASAP:ABE-0004136" /db_xref="EcoGene:EG30106" /db_xref="GeneID:945820" gene complement(1287782..1288624) /gene="purU" /locus_tag="b1232" /gene_synonym="ECK1227; JW1220; tgs; ychI" /db_xref="EcoGene:EG11819" /db_xref="GeneID:945827" CDS complement(1287782..1288624) /gene="purU" /locus_tag="b1232" /gene_synonym="ECK1227; JW1220; tgs; ychI" /EC_number="3.5.1.10" /function="enzyme; Purine ribonucleotide biosynthesis" /experiment="N-terminus verified by Edman degradation: PMID 8226647" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009152 - purine ribonucleotide biosynthetic process" /note="formyltetrahydrofolate deformylase; for purT-dependent FGAR synthesis" /codon_start=1 /transl_table=11 /product="formyltetrahydrofolate hydrolase" /protein_id="NP_415748.1" /db_xref="GI:16129193" /db_xref="ASAP:ABE-0004138" /db_xref="UniProtKB/Swiss-Prot:P37051" /db_xref="EcoGene:EG11819" /db_xref="GeneID:945827" /translation="MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHR TGRFFMRTELEGIFNDSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLL MKANYGGLDVEIAAVIGNHDTLRSLVERFDIPFELVSHEGLTRNEHDQKMADAIDAYQ PDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAH YVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYKVLAQRVFVYGNR TIIL" gene complement(1288674..1289132) /gene="ychJ" /locus_tag="b1233" /gene_synonym="ECK1228; JW1221" /db_xref="EcoGene:EG12119" /db_xref="GeneID:945828" CDS complement(1288674..1289132) /gene="ychJ" /locus_tag="b1233" /gene_synonym="ECK1228; JW1221" /codon_start=1 /transl_table=11 /product="UPF0225 family protein" /protein_id="NP_415749.1" /db_xref="GI:16129194" /db_xref="ASAP:ABE-0004140" /db_xref="UniProtKB/Swiss-Prot:P37052" /db_xref="EcoGene:EG12119" /db_xref="GeneID:945828" /translation="MSQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQ DADYLIKTWHPSCGAAALRAELMAGFAHTEWLGLTVFEHCWQDADNIGFVSFVARFTE GGKTGAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ" gene 1289245..1290150 /gene="rssA" /locus_tag="b1234" /gene_synonym="ECK1229; JW1222; ychK" /db_xref="EcoGene:EG12120" /db_xref="GeneID:945725" CDS 1289245..1290150 /gene="rssA" /locus_tag="b1234" /gene_synonym="ECK1229; JW1222; ychK" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative patatin-like family phospholipase" /protein_id="NP_415750.2" /db_xref="GI:226524709" /db_xref="ASAP:ABE-0004144" /db_xref="UniProtKB/Swiss-Prot:P0AFR0" /db_xref="EcoGene:EG12120" /db_xref="GeneID:945725" /translation="MRKIKIGLALGSGAARGWSHIGVINALKKVGIEIDIVAGCSIGS LVGAAYACDRLSALEDWVTSFSYWDVLRLMDLSWQRGGLLRGERVFNQYREIMPETEI ENCSRRFAAVATNLSTGRELWFTEGDLHLAIRASCSIPGLMAPVAHNGYWLVDGAVVN PIPISLTRALGADIVIAVDLQHDAHLMQQDLLSFNVSEENSENGDSLPWHARLKERLG SITTRRAVTAPTATEIMTTSIQVLENRLKRNRMAGDPPDILIQPVCPQISTLDFHRAH AAIAAGQLAVERKMDELLPLVRTNI" gene 1290242..1291255 /gene="rssB" /locus_tag="b1235" /gene_synonym="ECK1230; hnr; JW1223; mviA; sprE; verA; ychL" /db_xref="EcoGene:EG12121" /db_xref="GeneID:945855" CDS 1290242..1291255 /gene="rssB" /locus_tag="b1235" /gene_synonym="ECK1230; hnr; JW1223; mviA; sprE; verA; ychL" /function="regulator; Basic proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006350 - transcription" /note="Hnr protein" /codon_start=1 /transl_table=11 /product="PcnB-degradosome interaction factor; response regulator" /protein_id="NP_415751.1" /db_xref="GI:16129196" /db_xref="ASAP:ABE-0004147" /db_xref="UniProtKB/Swiss-Prot:P0AEV1" /db_xref="EcoGene:EG12121" /db_xref="GeneID:945855" /translation="MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDAL ELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGV EDVLLKPVKDLNRLREMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQEL QPPVQQVISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALL LRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLI LVSAGLNATLNTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLML SAE" gene 1291457..1292365 /gene="galU" /locus_tag="b1236" /gene_synonym="ECK1231; JW1224; verA; ychD" /db_xref="EcoGene:EG11319" /db_xref="GeneID:945730" CDS 1291457..1292365 /gene="galU" /locus_tag="b1236" /gene_synonym="ECK1231; JW1224; verA; ychD" /EC_number="2.7.7.9" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0009242 - colanic acid biosynthetic process; GO:0006012 - galactose metabolic process; GO:0006006 - glucose metabolic process; GO:0009269 - response to desiccation" /codon_start=1 /transl_table=11 /product="glucose-1-phosphate uridylyltransferase" /protein_id="NP_415752.1" /db_xref="GI:16129197" /db_xref="ASAP:ABE-0004150" /db_xref="UniProtKB/Swiss-Prot:P0AEP3" /db_xref="EcoGene:EG11319" /db_xref="GeneID:945730" /translation="MAAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQY VVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHV TIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFD ETGHSQIMVEPVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRY VLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAF VEYGIRHNTLGTEFKAWLEEEMGIKK" gene complement(1292509..1292922) /gene="hns" /locus_tag="b1237" /gene_synonym="B1; bglY; cur; drc; drdX; drs; ECK1232; fimG; H1; hnsA; irk; JW1225; msyA; osmZ; pilG; topS; topX; verA; virR" /db_xref="EcoGene:EG10457" /db_xref="GeneID:945829" CDS complement(1292509..1292922) /gene="hns" /locus_tag="b1237" /gene_synonym="B1; bglY; cur; drc; drdX; drs; ECK1232; fimG; H1; hnsA; irk; JW1225; msyA; osmZ; pilG; topS; topX; verA; virR" /function="regulator; Basic proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm; GO:0019861 - flagellum" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent; GO:0042330 - taxis; GO:0006350 - transcription" /note="DNA-binding protein HLP-II (HU, BH2, HD, NS); pleiotropic regulator" /codon_start=1 /transl_table=11 /product="global DNA-binding transcriptional dual regulator H-NS" /protein_id="NP_415753.1" /db_xref="GI:16129198" /db_xref="ASAP:ABE-0004152" /db_xref="UniProtKB/Swiss-Prot:P0ACF8" /db_xref="EcoGene:EG10457" /db_xref="GeneID:945829" /translation="MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEE SAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDE NGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ" gene 1293527..1294144 /gene="tdk" /locus_tag="b1238" /gene_synonym="ECK1233; JW1226" /db_xref="EcoGene:EG10994" /db_xref="GeneID:945834" CDS 1293527..1294144 /gene="tdk" /locus_tag="b1238" /gene_synonym="ECK1233; JW1226" /EC_number="2.7.1.21" /function="enzyme; Salvage of nucleosides and nucleotides" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /note="thymidine kinase" /codon_start=1 /transl_table=11 /product="thymidine kinase/deoxyuridine kinase" /protein_id="NP_415754.1" /db_xref="GI:16129199" /db_xref="ASAP:ABE-0004157" /db_xref="UniProtKB/Swiss-Prot:P23331" /db_xref="EcoGene:EG10994" /db_xref="GeneID:945834" /translation="MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRF GAGKVSSRIGLSSPAKLFNQNSSLFDEIRAEHEQQAIHCVLVDECQFLTRQQVYELSE VVDQLDIPVLCYGLRTDFRGELFIGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQA GRPYNEGEQVVIGGNERYVSVCRKHYKEALQVDSLTAIQERHRHD" mobile_element complement(1294426..1295405) /mobile_element_type="insertion sequence:ISZ" gene complement(1294426..1295322) /gene="insZ" /locus_tag="b4573" /gene_synonym="ECK1234; JW1227; JW5883; ychG; ychR" /pseudo /db_xref="EcoGene:EG11611" /db_xref="GeneID:4056037" CDS complement(join(1294426..1294992,1294992..1295141, 1295140..1295322)) /gene="insZ" /locus_tag="b4573" /gene_synonym="ECK1234; JW1227; JW5883; ychG; ychR" /note="pseudogene, transposase homolog" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0004159" /db_xref="ASAP:ABE-0004161" /db_xref="ASAP:ABE-0285106" /db_xref="UniProtKB/Swiss-Prot:P30192" /db_xref="EcoGene:EG11611" /db_xref="GeneID:4056037" gene complement(1295446..1298121) /gene="adhE" /locus_tag="b1241" /gene_synonym="adhC; ana; ECK1235; JW1228" /db_xref="EcoGene:EG10031" /db_xref="GeneID:945837" CDS complement(1295446..1298121) /gene="adhE" /locus_tag="b1241" /gene_synonym="adhC; ana; ECK1235; JW1228" /EC_number="1.1.1.1" /EC_number="1.2.1.10" /function="enzyme; Energy metabolism, carbon: Fermentation" /GO_process="GO:0006113 - fermentation" /note="CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase" /codon_start=1 /transl_table=11 /product="fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase" /protein_id="NP_415757.1" /db_xref="GI:16129202" /db_xref="ASAP:ABE-0004164" /db_xref="UniProtKB/Swiss-Prot:P0A9Q7" /db_xref="EcoGene:EG10031" /db_xref="GeneID:945837" /translation="MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAAD ARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAE PIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKDATNKAADIVLQAAIAA GAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTP VVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFATHGGYLLQG KELKAVQDVILKNGALNAAIVGQPAYKIAELAGFSVPENTKILIGEVTVVDESEPFAH EKLSPTLAMYRAKDFEDAVEKAEKLVAMGGIGHTSCLYTDQDNQPARVSYFGQKMKTA RILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAEN MLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGV ETEVFFEVEADPTLSIVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHF EELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSGTGSEVTPFAVVTDDATGQKYPLAD YALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHAMEAYVSVLASEFSDGQALQALKLL KEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLA NALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKL LAWLETLKAELGIPKSIREAGVQEADFLANVDKLSEDAFDDQCTGANPRYPLISELKQ ILLDTYYGRDYVEGETAAKKEAAPAKAEKKAKKSA" gene 1298598..1299245 /gene="ychE" /locus_tag="b1242" /gene_synonym="ECK1236; JW1229" /db_xref="EcoGene:EG11342" /db_xref="GeneID:945836" CDS 1298598..1299245 /gene="ychE" /locus_tag="b1242" /gene_synonym="ECK1236; JW1229" /function="putative transport; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /note="putative channel protein" /codon_start=1 /transl_table=11 /product="UPF0056 family inner membrane protein" /protein_id="NP_415758.1" /db_xref="GI:16129203" /db_xref="ASAP:ABE-0004168" /db_xref="UniProtKB/Swiss-Prot:P25743" /db_xref="EcoGene:EG11342" /db_xref="GeneID:945836" /translation="MIQTFFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTAAARN KTNLTANLSVAIILWISLFLGDTILQLFGISIDSFRIAGGILVVTIAMSMISGKLGED KQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSISYLFGFFVAIALF ALCCWGLFRMAPWLVRVLRQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN" mobile_element 1299499..1300693 /mobile_element_type="insertion sequence:IS5U" gene 1301182..1302813 /gene="oppA" /locus_tag="b1243" /gene_synonym="ECK1237; JW1235" /db_xref="EcoGene:EG10674" /db_xref="GeneID:945830" CDS 1301182..1302813 /gene="oppA" /locus_tag="b1243" /gene_synonym="ECK1237; JW1235" /function="transport; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall; GO:0042597 - periplasmic space" /GO_process="GO:0000270 - peptidoglycan metabolic process; GO:0006457 - protein folding" /note="oligopeptide transport; periplasmic binding protein; periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="oligopeptide ABC transporter periplasmic binding protein" /protein_id="NP_415759.1" /db_xref="GI:16129204" /db_xref="ASAP:ABE-0004172" /db_xref="UniProtKB/Swiss-Prot:P23843" /db_xref="EcoGene:EG10674" /db_xref="GeneID:945830" /translation="MTNITKRSLVAAGVLAALMAGNVALAADVPAGVTLAEKQTLVRN NGSEVQSLDPHKIEGVPESNISRDLFEGLLVSDLDGHPAPGVAESWDNKDAKVWTFHL RKDAKWSDGTPVTAQDFVYSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKPITDL GVKAIDDHTLEVTLSEPVPYFYKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYT LKDWVVNERIVLERSPTYWNNAKTVINQVTYLPIASEVTDVNRYRSGEIDMTNNSMPI ELFQKLKKEIPDEVHVDPYLCTYYYEINNQKPPFNDVRVRTALKLGMDRDIIVNKVKA QGNMPAYGYTPPYTDGAKLTQPEWFGWSQEKRNEEAKKLLAEAGYTADKPLTINLLYN TSDLHKKLAIAASSLWKKNIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADYNEPT SFLNTMLSNSSMNTAHYKSPAFDSIMAETLKVTDEAQRTALYTKAEQQLDKDSAIVPV YYYVNARLVKPWVGGYTGKDPLDNTYTRNMYIVKH" gene 1302899..1303819 /gene="oppB" /locus_tag="b1244" /gene_synonym="ECK1238; JW1236; stkB" /db_xref="EcoGene:EG10675" /db_xref="GeneID:945823" CDS 1302899..1303819 /gene="oppB" /locus_tag="b1244" /gene_synonym="ECK1238; JW1236; stkB" /function="transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0000270 - peptidoglycan metabolic process" /note="oligopeptide transport permease protein; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="oligopeptide ABC transporter permease" /protein_id="NP_415760.1" /db_xref="GI:16129205" /db_xref="ASAP:ABE-0004174" /db_xref="UniProtKB/Swiss-Prot:P0AFH2" /db_xref="EcoGene:EG10675" /db_xref="GeneID:945823" /translation="MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPE VMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGA AAFFLAVILGVSAGVIAALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHW LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRR IILRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVL SLTILVGALTILFNAIVDVLYAVIDPKIRY" gene 1303834..1304742 /gene="oppC" /locus_tag="b1245" /gene_synonym="ECK1239; JW1237; stkB" /db_xref="EcoGene:EG10676" /db_xref="GeneID:945810" CDS 1303834..1304742 /gene="oppC" /locus_tag="b1245" /gene_synonym="ECK1239; JW1237; stkB" /function="transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0000270 - peptidoglycan metabolic process" /note="homolog of Salmonella oligopeptide transport permease protein; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="oligopeptide ABC transporter permease" /protein_id="NP_415761.1" /db_xref="GI:16129206" /db_xref="ASAP:ABE-0004176" /db_xref="UniProtKB/Swiss-Prot:P0AFH6" /db_xref="EcoGene:EG10676" /db_xref="GeneID:945810" /translation="MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFMHNRAAVASLI VLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMESGHYFGTDSSGRDLLVRVAIGGR ISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNV LGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPA GFLVVTLFCFNFIGDGLRDALDPKDR" gene 1304754..1305767 /gene="oppD" /locus_tag="b1246" /gene_synonym="ECK1240; JW1238" /db_xref="EcoGene:EG10677" /db_xref="GeneID:945802" CDS 1304754..1305767 /gene="oppD" /locus_tag="b1246" /gene_synonym="ECK1240; JW1238" /function="transport; Not classified" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0000270 - peptidoglycan metabolic process" /note="homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system" /codon_start=1 /transl_table=11 /product="oligopeptide ABC transporter ATPase" /protein_id="YP_025300.1" /db_xref="GI:49176090" /db_xref="ASAP:ABE-0004178" /db_xref="UniProtKB/Swiss-Prot:P76027" /db_xref="EcoGene:EG10677" /db_xref="GeneID:945802" /translation="MSVIETATVPLAQQQADALLNVKDLRVTFSTPDGDVTAVNDLNF SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEHELNKLR AEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKNMSKAEAFEESVRMLDAVKMPEARK RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREF NTAIIMITHDLVVVAGICDKVLVMYAGRTMEYGNARDVFYQPVHPYSIGLLNAVPRLD AEGETMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICSSAPPLEEFTPGRLRACFKPVE ELL" gene 1305764..1306768 /gene="oppF" /locus_tag="b1247" /gene_synonym="ECK1241; JW1239" /db_xref="EcoGene:EG10678" /db_xref="GeneID:945818" CDS 1305764..1306768 /gene="oppF" /locus_tag="b1247" /gene_synonym="ECK1241; JW1239" /function="putative transport; Not classified" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0000270 - peptidoglycan metabolic process" /note="homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system" /codon_start=1 /transl_table=11 /product="oligopeptide ABC transporter ATPase" /protein_id="NP_415763.1" /db_xref="GI:16129208" /db_xref="ASAP:ABE-0004182" /db_xref="UniProtKB/Swiss-Prot:P77737" /db_xref="EcoGene:EG10678" /db_xref="GeneID:945818" /translation="MNAVTEGRKVLLEIADLKVHFEIKDGKQWFWQPPKTLKAVDGVT LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGHVAWLGKELLGMKPDEWRAVRSD IQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKMSRQEVRERVKAMMLKVGLLPNLINR YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSL IFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTRALMSAVPIPDPDLE KNKTIQLLEGELPSPINPPSGCVFRTRCPIAGPECAKTRPVLEGSFRHSVSCLKVDPL " gene complement(1306821..1307150) /gene="yciU" /locus_tag="b1248" /gene_synonym="ECK1242; JW1240" /db_xref="EcoGene:EG14256" /db_xref="GeneID:945819" CDS complement(1306821..1307150) /gene="yciU" /locus_tag="b1248" /gene_synonym="ECK1242; JW1240" /codon_start=1 /transl_table=11 /product="UPF0263 family protein" /protein_id="NP_415764.4" /db_xref="GI:90111236" /db_xref="ASAP:ABE-0004184" /db_xref="UniProtKB/Swiss-Prot:P0A8L7" /db_xref="EcoGene:EG14256" /db_xref="GeneID:945819" /translation="MDMDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEE RGGAELFDPAEDWQEHVDFDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKL CHIIWRE" gene complement(1307185..1308645) /gene="clsA" /locus_tag="b1249" /gene_synonym="cls; ECK1243; JW1241; nov; yciJ" /db_xref="EcoGene:EG11608" /db_xref="GeneID:945821" CDS complement(1307185..1308645) /gene="clsA" /locus_tag="b1249" /gene_synonym="cls; ECK1243; JW1241; nov; yciJ" /EC_number="2.7.8.-" /function="enzyme; Macromolecule synthesis: Phospholipids" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0008654 - phospholipid biosynthetic process; GO:0042493 - response to drug" /note="cardiolipin synthase, a major membrane phospholipid; novobiocin sensitivity" /codon_start=1 /transl_table=11 /product="cardiolipin synthase 1" /protein_id="NP_415765.1" /db_xref="GI:16129210" /db_xref="ASAP:ABE-0004186" /db_xref="UniProtKB/Swiss-Prot:P0A6H8" /db_xref="EcoGene:EG11608" /db_xref="GeneID:945821" /translation="MTTVYTLVSWLAILGYWLLIAGVTLRILMKRRAVPSAMAWLLII YILPLVGIIAYLAVGELHLGKRRAERARAMWPSTAKWLNDLKACKHIFAEENSSVAAP LFKLCERRQGIAGVKGNQLQLMTESDDVMQALIRDIQLARHNIEMVFYIWQPGGMADQ VAESLMAAARRGIHCRLMLDSAGSVAFFRSPWPELMRNAGIEVVEALKVNLMRVFLRR MDLRQHRKMIMIDNYIAYTGSMNMVDPRYFKQDAGVGQWIDLMARMEGPIATAMGIIY SCDWEIETGKRILPPPPDVNIMPFEQASGHTIHTIASGPGFPEDLIHQALLTAAYSAR EYLIMTTPYFVPSDDLLHAICTAAQRGVDVSIILPRKNDSMLVGWASRAFFTELLAAG VKIYQFEGGLLHTKSVLVDGELSLVGTVNLDMRSLWLNFEITLAIDDKGFGADLAAVQ DDYISRSRLLDARLWLKRPLWQRVAERLFYFFSPLL" gene 1308788..1308961 /gene="yciY" /locus_tag="b4595" /gene_synonym="ECK4405" /db_xref="EcoGene:EG14393" /db_xref="GeneID:5061502" CDS 1308788..1308961 /gene="yciY" /locus_tag="b4595" /gene_synonym="ECK4405" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_001165316.1" /db_xref="GI:145698250" /db_xref="UniProtKB/Swiss-Prot:A5A613" /db_xref="EcoGene:EG14393" /db_xref="GeneID:5061502" /translation="MKRSRTEVGRWRMQRQASRRKSRWLEGQSRRNMRIHSIRKCILN KQRNSLLFAIYNI" gene complement(1309016..1310269) /gene="kch" /locus_tag="b1250" /gene_synonym="ECK1244; JW1242" /db_xref="EcoGene:EG11606" /db_xref="GeneID:945841" CDS complement(1309016..1310269) /gene="kch" /locus_tag="b1250" /gene_synonym="ECK1244; JW1242" /GO_component="GO:0019866 - organelle inner membrane" /GO_function="GO:0005244 - voltage-gated ion channel activity" /note="putative potassium channel protein (VIC family)" /codon_start=1 /transl_table=11 /product="voltage-gated potassium channel" /protein_id="NP_415766.1" /db_xref="GI:16129211" /db_xref="ASAP:ABE-0004189" /db_xref="UniProtKB/Swiss-Prot:P31069" /db_xref="EcoGene:EG11606" /db_xref="GeneID:945841" /translation="MSHWATFKQTATNLWVTLRHDILALAVFLNGLLIFKTIYGMSVN LLDIFHIKAFSELDLSLLANAPLFMLGVFLVLNSIGLLFRAKLAWAISIILLLIALIY TLHFYPWLKFSIGFCIFTLVFLLILRKDFSHSSAAAGTIFAFISFTTLLFYSTYGALY LSEGFNPRIESLMTAFYFSIETMSTVGYGDIVPVSESARLFTISVIISGITVFATSMT SIFGPLIRGGFNKLVKGNNHTMHRKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP EDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKD MSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLNGEEINNDMLVSMLL NSGHGIFSDNDELETKADSKESAQK" gene complement(1310569..1310865) /gene="yciI" /locus_tag="b1251" /gene_synonym="ECK1245; JW1243" /db_xref="EcoGene:EG11607" /db_xref="GeneID:949085" CDS complement(1310569..1310865) /gene="yciI" /locus_tag="b1251" /gene_synonym="ECK1245; JW1243" /experiment="N-terminus verified by Edman degradation: PMID 9868784" /codon_start=1 /transl_table=11 /product="putative DGPF domain-containing enzyme" /protein_id="NP_415767.2" /db_xref="GI:90111237" /db_xref="ASAP:ABE-0004192" /db_xref="UniProtKB/Swiss-Prot:P0AB55" /db_xref="EcoGene:EG11607" /db_xref="GeneID:949085" /translation="MLYVIYAQDKADSLEKRLSVRPAHLARLQLLHDEGRLLTAGPMP AVDSNDPGAAGFTGSTVIAEFESLEAAQAWADADPYVAAGVYEHVSVKPFKKVF" gene 1311089..1311808 /gene="tonB" /locus_tag="b1252" /gene_synonym="ECK1246; exbA; JW5195; T1rec" /db_xref="EcoGene:EG11012" /db_xref="GeneID:945843" CDS 1311089..1311808 /gene="tonB" /locus_tag="b1252" /gene_synonym="ECK1246; exbA; JW5195; T1rec" /function="membrane; Transport of small molecules: Cations" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="energy transducer; uptake of iron, cyanocobalimin; sensitivity to phages, colicins" /codon_start=1 /transl_table=11 /product="membrane spanning protein in TonB-ExbB-ExbD transport complex" /protein_id="NP_415768.1" /db_xref="GI:16129213" /db_xref="ASAP:ABE-0004196" /db_xref="UniProtKB/Swiss-Prot:P02929" /db_xref="EcoGene:EG11012" /db_xref="GeneID:945843" /translation="MTLDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAPAQP ISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKP VKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQ PQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRYEPG KPGSGIVVNILFKINGTTEIQ" gene complement(1311848..1312246) /gene="yciA" /locus_tag="b1253" /gene_synonym="ECK1247; JW1245" /db_xref="EcoGene:EG11121" /db_xref="GeneID:946634" CDS complement(1311848..1312246) /gene="yciA" /locus_tag="b1253" /gene_synonym="ECK1247; JW1245" /codon_start=1 /transl_table=11 /product="acyl-CoA esterase" /protein_id="NP_415769.1" /db_xref="GI:16129214" /db_xref="ASAP:ABE-0004198" /db_xref="UniProtKB/Swiss-Prot:P0A8Z0" /db_xref="EcoGene:EG11121" /db_xref="GeneID:946634" /translation="MSTTHNVPQGDLVLRTLAMPADTNANGDIFGGWLMSQMDIGGAI LAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVQKGTTSVSINIEVWVKKVASE PIGQRYKATEALFKYVAVDPEGKPRALPVE" gene complement(1312351..1312890) /gene="yciB" /locus_tag="b1254" /gene_synonym="ECK1248; ispA; ispZ; JW1246" /db_xref="EcoGene:EG11122" /db_xref="GeneID:946228" CDS complement(1312351..1312890) /gene="yciB" /locus_tag="b1254" /gene_synonym="ECK1248; ispA; ispZ; JW1246" /codon_start=1 /transl_table=11 /product="IspA family inner membrane protein" /protein_id="NP_415770.1" /db_xref="GI:16129215" /db_xref="ASAP:ABE-0004200" /db_xref="UniProtKB/Swiss-Prot:P0A710" /db_xref="EcoGene:EG11122" /db_xref="GeneID:946228" /translation="MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRF RKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQ RMLGKELTLPQPVWSKLNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLI FTLLSGIYIYRHMPQEDKS" gene complement(1312920..1313663) /gene="yciC" /locus_tag="b1255" /gene_synonym="ECK1249; JW1247" /db_xref="EcoGene:EG11123" /db_xref="GeneID:945844" CDS complement(1312920..1313663) /gene="yciC" /locus_tag="b1255" /gene_synonym="ECK1249; JW1247" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="UPF0259 family inner membrane protein" /protein_id="NP_415771.1" /db_xref="GI:16129216" /db_xref="ASAP:ABE-0004204" /db_xref="UniProtKB/Swiss-Prot:P21365" /db_xref="EcoGene:EG11123" /db_xref="GeneID:945844" /translation="MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPS DAQLAQLNDGVPVSGSSGLFDLVQNMSPEQQQILLQASAASTFSGLIGNAILAGGVIL IIQLVSAGQRVSALRAIGASAPILPKLFILIFLTTLLVQIGIMLVVVPGIIMAILLAL APVMLVQDKMGVFASMRSSMRLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEI GAVLANTLSNLISAILLIYLFRLYMLIRQ" gene 1314020..1314658 /gene="ompW" /locus_tag="b1256" /gene_synonym="ECK1250; JW1248; yciD" /db_xref="EcoGene:EG11124" /db_xref="GeneID:945128" CDS 1314020..1314658 /gene="ompW" /locus_tag="b1256" /gene_synonym="ECK1250; JW1248; yciD" /function="putative membrane; Not classified" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative outer membrane protein" /codon_start=1 /transl_table=11 /product="outer membrane protein W" /protein_id="NP_415772.1" /db_xref="GI:16129217" /db_xref="ASAP:ABE-0004210" /db_xref="UniProtKB/Swiss-Prot:P0A915" /db_xref="EcoGene:EG11124" /db_xref="GeneID:945128" /translation="MKKLTVAALAVTTLLSGSAFAHEAGEFFMRAGSATVRPTEGAGG TLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPP TLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVG VDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF" gene complement(1314718..1315224) /gene="yciE" /locus_tag="b1257" /gene_synonym="ECK1251; JW1249" /db_xref="EcoGene:EG11125" /db_xref="GeneID:946871" CDS complement(1314718..1315224) /gene="yciE" /locus_tag="b1257" /gene_synonym="ECK1251; JW1249" /experiment="N-terminus verified by Edman degradation: PMID 8455549" /codon_start=1 /transl_table=11 /product="putative rubrerythrin/ferritin-like metal-binding protein" /protein_id="NP_415773.1" /db_xref="GI:16129218" /db_xref="ASAP:ABE-0004212" /db_xref="UniProtKB/Swiss-Prot:P21363" /db_xref="EcoGene:EG11125" /db_xref="GeneID:946871" /translation="MNRIEHYHDWLRDAHAMEKQAESMLESMASRIDNYPELRARIEQ HLSETKNQIVQLETILDRNDISRSVIKDSMSKMAALGQSIGGIFPSDEIVKGSISGYV FEQFEIACYTSLLAAAKNAGDTASIPTIEAILNEEKQMADWLIQNIPQTTEKFLIRSE TDGVEAKK" gene complement(1315270..1315770) /gene="yciF" /locus_tag="b1258" /gene_synonym="ECK1252; JW1250" /db_xref="EcoGene:EG11126" /db_xref="GeneID:947133" CDS complement(1315270..1315770) /gene="yciF" /locus_tag="b1258" /gene_synonym="ECK1252; JW1250" /function="putative structure; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 8455549" /note="putative structural proteins" /codon_start=1 /transl_table=11 /product="putative rubrerythrin/ferritin-like metal-binding protein" /protein_id="NP_415774.1" /db_xref="GI:16129219" /db_xref="ASAP:ABE-0004222" /db_xref="UniProtKB/Swiss-Prot:P21362" /db_xref="EcoGene:EG11126" /db_xref="GeneID:947133" /translation="MNMKTIEDVFIHLLSDTYSAEKQLTRALAKLARATSNEKLSQAF HAHLEETHGQIERIDQVVESESNLKIKRMKCVAMEGLIEEANEVIESTEKNEVRDAAL IAAAQKVEHYEIASYGTLATLAEQLGYRKAAKLLKETLEEEKATDIKLTDLAINNVNK KAENKA" gene complement(1315856..1316035) /gene="yciG" /locus_tag="b1259" /gene_synonym="ECK1253; JW1251" /db_xref="EcoGene:EG11127" /db_xref="GeneID:947489" CDS complement(1315856..1316035) /gene="yciG" /locus_tag="b1259" /gene_synonym="ECK1253; JW1251" /codon_start=1 /transl_table=11 /product="KGG family protein" /protein_id="NP_415775.4" /db_xref="GI:90111238" /db_xref="ASAP:ABE-0004229" /db_xref="UniProtKB/Swiss-Prot:P21361" /db_xref="EcoGene:EG11127" /db_xref="GeneID:947489" /translation="MAEHRGGSGNFAEDREKASDAGRKGGQHSGGNFKNDPQRASEAG KKGGQQSGGNKSGKS" gene complement(1316416..1317222) /gene="trpA" /locus_tag="b1260" /gene_synonym="ECK1254; JW1252; try; tryp" /db_xref="EcoGene:EG11024" /db_xref="GeneID:946204" CDS complement(1316416..1317222) /gene="trpA" /locus_tag="b1260" /gene_synonym="ECK1254; JW1252; try; tryp" /EC_number="4.2.1.20" /function="enzyme; Amino acid biosynthesis: Tryptophan" /experiment="N-terminus verified by Edman degradation: PMID 388433,4863752,9298646" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0000162 - tryptophan biosynthetic process" /note="tryptophan synthase, alpha protein" /codon_start=1 /transl_table=11 /product="tryptophan synthase, alpha subunit" /protein_id="NP_415776.1" /db_xref="GI:16129221" /db_xref="ASAP:ABE-0004232" /db_xref="UniProtKB/Swiss-Prot:P0A877" /db_xref="EcoGene:EG11024" /db_xref="GeneID:946204" /translation="MERYESLFAQLKERKEGAFVPFVTLGDPGIEQSLKIIDTLIEAG ADALELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMY ANLVFNKGIDEFYAQCEKVGVDSVLVADVPVEESAPFRQAALRHNVAPIFICPPNADD DLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPD QVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKVFVQPMKAATRS" gene complement(1317222..1318415) /gene="trpB" /locus_tag="b1261" /gene_synonym="ECK1255; JW1253" /db_xref="EcoGene:EG11025" /db_xref="GeneID:945768" CDS complement(1317222..1318415) /gene="trpB" /locus_tag="b1261" /gene_synonym="ECK1255; JW1253" /EC_number="4.2.1.20" /function="enzyme; Amino acid biosynthesis: Tryptophan" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0000162 - tryptophan biosynthetic process" /note="tryptophan synthase, beta protein" /codon_start=1 /transl_table=11 /product="tryptophan synthase, beta subunit" /protein_id="NP_415777.1" /db_xref="GI:16129222" /db_xref="ASAP:ABE-0004234" /db_xref="UniProtKB/Swiss-Prot:P0A879" /db_xref="EcoGene:EG11025" /db_xref="GeneID:945768" /translation="MTTLLNPYFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQ FNDLLKNYAGRPTALTKCQNITAGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMG KTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVH SGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILE REGRLPDAVIACVGGGSNAIGMFADFINETNVGLIGVEPGGHGIETGEHGAPLKHGRV GIYFGMKAPMMQTEDGQIEESYSISAGLDFPSVGPQHAYLNSTGRADYVSITDDEALE AFKTLCLHEGIIPALESSHALAHALKMMRENPDKEQLLVVNLSGRGDKDIFTVHDILK ARGEI" gene complement(1318427..1319788) /gene="trpC" /locus_tag="b1262" /gene_synonym="ECK1256; JW1254; trpF" /db_xref="EcoGene:EG11026" /db_xref="GeneID:945519" CDS complement(1318427..1319788) /gene="trpC" /locus_tag="b1262" /gene_synonym="ECK1256; JW1254; trpF" /EC_number="4.1.1.48" /EC_number="5.3.1.24" /function="enzyme; Amino acid biosynthesis: Tryptophan" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0000162 - tryptophan biosynthetic process" /note="N-(5-phosphoribosyl)anthranilate isomerase and indole-3-glycerolphosphate synthetase" /codon_start=1 /transl_table=11 /product="indole-3-glycerolphosphate synthetase and N-(5-phosphoribosyl)anthranilate isomerase" /protein_id="NP_415778.3" /db_xref="GI:635341464" /db_xref="ASAP:ABE-0004238" /db_xref="UniProtKB/Swiss-Prot:P00909" /db_xref="EcoGene:EG11026" /db_xref="GeneID:945519" /translation="MMQTVLAKIVADKAIWVEARKQQQPLASFQNEVQPSTRHFYDAL QGARTAFILECKKASPSKGVIRDDFDPARIAAIYKHYASAISVLTDEKYFQGSFNFLP IVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMG VLTEVSNEEEQERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGI NTYAQVRELSHFANGFLIGSALMAHDDLHAAVRRVLLGENKVCGLTRGQDAKAAYDAG AIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQL HGNEEQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDW SLLNGQSLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVESQPGIKDARLLASVFQTL RAY" gene complement(1319789..1321384) /gene="trpD" /locus_tag="b1263" /gene_synonym="ECK1257; JW1255; trpGD" /db_xref="EcoGene:EG11027" /db_xref="GeneID:945109" CDS complement(1319789..1321384) /gene="trpD" /locus_tag="b1263" /gene_synonym="ECK1257; JW1255; trpGD" /EC_number="2.4.2.18" /EC_number="4.1.3.27" /function="enzyme; Amino acid biosynthesis: Tryptophan" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0000162 - tryptophan biosynthetic process" /note="anthranilate synthase component II, glutamine amidotransferase and phosphoribosylanthranilate transferase" /codon_start=1 /transl_table=11 /product="fused glutamine amidotransferase (component II) of anthranilate synthase/anthranilate phosphoribosyl transferase" /protein_id="NP_415779.1" /db_xref="GI:16129224" /db_xref="ASAP:ABE-0004241" /db_xref="UniProtKB/Swiss-Prot:P00904" /db_xref="EcoGene:EG11027" /db_xref="GeneID:945109" /translation="MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERL ATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG EILHGKASSIEHDGQAMFAGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHD ADRVCGFQFHPESILTTQGARLLEQTLAWAQQKLEPANTLQPILEKLYQAQTLSQQES HQLFSAVVRGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADI VGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNAD KSRQALDELGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGV YSPELVLPIAETLRVLGYQRAAVVHSGGMDEVSLHAPTIVAELHDGEIKSYQLTAEDF GLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRLHGHEDLQANA QTVLEVLRSGSAYDRVTALAARG" gene complement(1321384..1322946) /gene="trpE" /locus_tag="b1264" /gene_synonym="anth; ECK1258; JW1256; tryD; tryp-4" /db_xref="EcoGene:EG11028" /db_xref="GeneID:945846" CDS complement(1321384..1322946) /gene="trpE" /locus_tag="b1264" /gene_synonym="anth; ECK1258; JW1256; tryD; tryp-4" /EC_number="4.1.3.27" /function="enzyme; Amino acid biosynthesis: Tryptophan" /experiment="N-terminus verified by Edman degradation: PMID 4598537" /GO_process="GO:0000162 - tryptophan biosynthetic process" /note="anthranilate synthase component I" /codon_start=1 /transl_table=11 /product="component I of anthranilate synthase" /protein_id="NP_415780.1" /db_xref="GI:16129225" /db_xref="ASAP:ABE-0004244" /db_xref="UniProtKB/Swiss-Prot:P00895" /db_xref="EcoGene:EG11028" /db_xref="GeneID:945846" /translation="MQTQKPTLELLTCEGAYRDNPTALFHQLCGDRPATLLLESADID SKDDLKSLLLVDSALRITALGDTVTIQALSGNGEALLALLDNALPAGVESEQSPNCRV LRFPPVSPLLDEDARLCSLSVFDAFRLLQNLLNVPKEEREAMFFGGLFSYDLVAGFED LPQLSAENNCPDFCFYLAETLMVIDHQKKSTRIQASLFAPNEEEKQRLTARLNELRQQ LTEAAPPLPVVSVPHMRCECNQSDEEFGGVVRLLQKAIRAGEIFQVVPSRRFSLPCPS PLAAYYVLKKSNPSPYMFFMQDNDFTLFGASPESSLKYDATSRQIEIYPIAGTRPRGR RADGSLDRDLDSRIELEMRTDHKELSEHLMLVDLARNDLARICTPGSRYVADLTKVDR YSYVMHLVSRVVGELRHDLDALHAYRACMNMGTLSGAPKVRAMQLIAEAEGRRRGSYG GAVGYFTAHGDLDTCIVIRSALVENGIATVQAGAGVVLDSVPQSEADETRNKARAVLR AIATAHHAQETF" gene complement(1323038..1323082) /gene="trpL" /locus_tag="b1265" /gene_synonym="ECK1259; JW1257; trpEE" /db_xref="EcoGene:EG11274" /db_xref="GeneID:945856" CDS complement(1323038..1323082) /gene="trpL" /locus_tag="b1265" /gene_synonym="ECK1259; JW1257; trpEE" /function="leader; Amino acid biosynthesis: Tryptophan" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0000162 - tryptophan biosynthetic process" /codon_start=1 /transl_table=11 /product="trp operon leader peptide" /protein_id="NP_415781.1" /db_xref="GI:16129226" /db_xref="ASAP:ABE-0004246" /db_xref="UniProtKB/Swiss-Prot:P0AD92" /db_xref="EcoGene:EG11274" /db_xref="GeneID:945856" /translation="MKAIFVLKGWWRTS" gene 1323220..1324101 /gene="yciV" /locus_tag="b1266" /gene_synonym="ECK1260; JW1258; trpH" /db_xref="EcoGene:EG14257" /db_xref="GeneID:945857" CDS 1323220..1324101 /gene="yciV" /locus_tag="b1266" /gene_synonym="ECK1260; JW1258; trpH" /function="putative enzyme; Not classified" /note="putative enzymes" /codon_start=1 /transl_table=11 /product="PHP domain protein" /protein_id="NP_415782.1" /db_xref="GI:16129227" /db_xref="ASAP:ABE-0004252" /db_xref="UniProtKB/Swiss-Prot:P77766" /db_xref="EcoGene:EG14257" /db_xref="GeneID:945857" /translation="MSDTNYAVIYDLHSHTTASDGCLTPEALVHRAVEMRVGTLAITD HDTTAAIAPAREEISRSGLALNLIPGVEISTVWENHEIHIVGLNIDITHPLMCEFLAQ QTERRNQRAQLIAERLEKAQIPGALEGAQRLAQGGAVTRGHFARFLVECGKASSMADV FKKYLARGKTGYVPPQWCTIEQAIDVIHHSGGKAVLAHPGRYNLSAKWLKRLVAHFAE HHGDAMEVAQCQQSPNERTQLAALARQHHLWASQGSDFHQPCPWIELGRKLWLPAGVE GVWQLWEQPQNTTEREL" gene 1324098..1324718 /gene="yciO" /locus_tag="b1267" /gene_synonym="ECK1261; JW5196" /db_xref="EcoGene:EG12967" /db_xref="GeneID:945854" CDS 1324098..1324718 /gene="yciO" /locus_tag="b1267" /gene_synonym="ECK1261; JW5196" /codon_start=1 /transl_table=11 /product="putative RNA binding protein" /protein_id="NP_415783.6" /db_xref="GI:162135901" /db_xref="ASAP:ABE-0004254" /db_xref="UniProtKB/Swiss-Prot:P0AFR4" /db_xref="EcoGene:EG12967" /db_xref="GeneID:945854" /translation="MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKI EDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILK GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEI KDRLEKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL" gene 1324746..1326641 /gene="yciQ" /locus_tag="b1268" /gene_synonym="ECK1262; JW5197; yciP" /db_xref="EcoGene:EG12969" /db_xref="GeneID:945850" CDS 1324746..1326641 /gene="yciQ" /locus_tag="b1268" /gene_synonym="ECK1262; JW5197; yciP" /codon_start=1 /transl_table=11 /product="enhancer of membrane protein expression; putative inner membrane protein" /protein_id="NP_415784.1" /db_xref="GI:16129229" /db_xref="ASAP:ABE-0004256" /db_xref="UniProtKB/Swiss-Prot:P45848" /db_xref="EcoGene:EG12969" /db_xref="GeneID:945850" /translation="MAGKFRCILLLIAGLFVSSLSYAENTEIPSYEEGISLFDVEATL QPDGVLDIKENIHFQARNQQIKHGFYRDLPRLWMQPDGDAALLNYHIVGVTRDGIPEP WHLDWHIGLMSIVVGDKQRFLPQGDYHYQIHYQVKNAFLREGDSDLLIWNVTGNHWPF EIYKTRFSLQFSNIAGNPFSEIDLFTGEEGDTYRNGRILEDGRIESRDPFYREDFTVL YRWPHALLSNASAPQTTNIFSHLLLPSTSSLLIWFPCLFLVCGWLYLWKRRPQFTPVD VIETDVIPPDYTPGMLRLDAKLVYDDKGFCADIVNLIVKGKIHLEDQSDKNQQILIRV NEGATRNNAVLLPAEQLLLEALFRKGDKVVLTGRRNRVLRRAFLRMQKFYLPRKKSSF YRSDTFLQWGGLAILAVILYGNLSPVGWAGMSLVGDMFIMICWIIPFLFCSLELLFAR DDDKPCVNRVIITLFLPLICSGVAFYSLYINVGDVFFYWYMPAGYFTAVCLTGYLTGM GYIFLPKFTQTGQQRYAHGEAIVNYLARKEAATHSGRRRKGETRKLDYALLGWAISAN LGREWALRIAPSLSSAIRAPEIARNGVLFSLQTHLSCGANTSLLGRSYSGGGAGGGAG GGGGGGW" gene 1326852..1327727 /gene="rluB" /locus_tag="b1269" /gene_synonym="ECK1263; JW1261; yciL" /db_xref="EcoGene:EG12433" /db_xref="GeneID:945840" CDS 1326852..1327727 /gene="rluB" /locus_tag="b1269" /gene_synonym="ECK1263; JW1261; yciL" /EC_number="4.2.1.70" /function="enzyme; rRNA modification" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="23S rRNA pseudouridine(2605) synthase" /protein_id="NP_415785.1" /db_xref="GI:16129230" /db_xref="ASAP:ABE-0004259" /db_xref="UniProtKB/Swiss-Prot:P37765" /db_xref="EcoGene:EG12433" /db_xref="GeneID:945840" /translation="MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEV TPGLKIRIDGHLISVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR WIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGV QLEDGPAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDI PLPKGLPRGGWTELDLAQTNYLRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHS QVSGGRRSGGRNNNG" repeat_region 1327737..1327755 /note="REP109 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1327767..1328357) /gene="btuR" /locus_tag="b1270" /gene_synonym="cobA; ECK1264; JW1262" /db_xref="EcoGene:EG10130" /db_xref="GeneID:945839" CDS complement(1327767..1328357) /gene="btuR" /locus_tag="b1270" /gene_synonym="cobA; ECK1264; JW1262" /EC_number="2.5.1.-" /EC_number="2.5.1.17" /function="enzyme; Biosynthesis of cofactors, carriers: Cobalamin" /GO_component="GO:0005737 - cytoplasm" /note="cob(I)alamin adenolsyltransferase" /codon_start=1 /transl_table=11 /product="cob(I)yrinic acid a,c-diamide adenosyltransferase" /protein_id="NP_415786.1" /db_xref="GI:16129231" /db_xref="ASAP:ABE-0004261" /db_xref="UniProtKB/Swiss-Prot:P0A9H5" /db_xref="EcoGene:EG10130" /db_xref="GeneID:945839" /translation="MSDERYQQRQQRVKEKVDARVAQAQDERGIIIVFTGNGKGKTTA AFGTATRAVGHGKKVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWDTQNRESDT AACREVWQHAKRMLADSSLDMVLLDELTYMVAYDYLPLEEVVQALNERPHQQTVIITG RGCHRDILELADTVSELRPVKHAFDAGVKAQIGIDY" gene complement(1328354..1329112) /gene="yciK" /locus_tag="b1271" /gene_synonym="ECK1265; JW1263" /db_xref="EcoGene:EG11759" /db_xref="GeneID:945838" CDS complement(1328354..1329112) /gene="yciK" /locus_tag="b1271" /gene_synonym="ECK1265; JW1263" /function="putative enzyme; Not classified" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="putative EmrKY-TolC system oxoacyl-(acyl carrier protein) reductase" /protein_id="NP_415787.1" /db_xref="GI:16129232" /db_xref="ASAP:ABE-0004263" /db_xref="UniProtKB/Swiss-Prot:P31808" /db_xref="EcoGene:EG11759" /db_xref="GeneID:945838" /translation="MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGR NEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVNYPRLDGVLHNAGL LGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA NWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAFPTEDPQKLKTPA DIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGISQ" gene 1329332..1330381 /gene="sohB" /locus_tag="b1272" /gene_synonym="ECK1266; JW1264" /db_xref="EcoGene:EG10956" /db_xref="GeneID:945858" CDS 1329332..1330381 /gene="sohB" /locus_tag="b1272" /gene_synonym="ECK1266; JW1264" /function="putative enzyme; Not classified" /note="putative protease" /codon_start=1 /transl_table=11 /product="inner membrane protein, S49 peptidase family protein" /protein_id="NP_415788.1" /db_xref="GI:16129233" /db_xref="ASAP:ABE-0004267" /db_xref="UniProtKB/Swiss-Prot:P0AG14" /db_xref="EcoGene:EG10956" /db_xref="GeneID:945858" /translation="MELLSEYGLFLAKIVTVVLAIAAIAAIIVNVAQRNKRQRGELRV NNLSEQYKEMKEELAAALMDSHQQKQWHKAQKKKHKQEAKAAKAKAKLGEVATDSKPR VWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYGLAASQLQR LRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKD IDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMRPSLDIEQVAT GEHWYGQQAVEKGLVDEINTSDEVILSLMEGREVVNVRYMQRKRLIDRFTGSAAESAD RLLLRWWQRGQKPLM" gene complement(1330417..1330668) /gene="yciN" /locus_tag="b1273" /gene_synonym="ECK1267; JW1265" /db_xref="EcoGene:EG12868" /db_xref="GeneID:945860" CDS complement(1330417..1330668) /gene="yciN" /locus_tag="b1273" /gene_synonym="ECK1267; JW1265" /experiment="N-terminus verified by Edman degradation: PMID 9868784" /codon_start=1 /transl_table=11 /product="DUF2498 protein YciN" /protein_id="NP_415789.1" /db_xref="GI:16129234" /db_xref="ASAP:ABE-0004269" /db_xref="UniProtKB/Swiss-Prot:P0AB61" /db_xref="EcoGene:EG12868" /db_xref="GeneID:945860" /translation="MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLV FTGDYFLDEQGLPTAKSTAVFNMFKHLAHVLSEKYHLVD" gene 1331048..1333645 /gene="topA" /locus_tag="b1274" /gene_synonym="asuA?; ECK1268; JW1266; supX" /db_xref="EcoGene:EG11013" /db_xref="GeneID:945862" CDS 1331048..1333645 /gene="topA" /locus_tag="b1274" /gene_synonym="asuA?; ECK1268; JW1266; supX" /EC_number="5.99.1.2" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication; GO:0006350 - transcription" /note="DNA topoisomerase type I, omega protein" /codon_start=1 /transl_table=11 /product="DNA topoisomerase I, omega subunit" /protein_id="NP_415790.1" /db_xref="GI:16129235" /db_xref="ASAP:ABE-0004275" /db_xref="UniProtKB/Swiss-Prot:P06612" /db_xref="EcoGene:EG11013" /db_xref="GeneID:945862" /translation="MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAA KKSADSTSTKTAKKPKKDERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEK ADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQAFNKPGELNID RVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEE FWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPT TSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNM VRGYISDNFGKKYLPESPNQYASKENSQEAHEAIRPSDVNVMAESLKDMEADAQKLYQ LIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRIL PAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRG YVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDH FFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCPTCGRKMGIRTASTGVFLGCSGYAL PPKERCKTTINLVPENEVLNVLEGEDAETNALRAKRRCPKCGTAMDSYLIDPKRKLHV CGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHLKMGRFGKYMACTNEECKNTR KILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVFLAANTFPKSRETRAPLVE ELYRFRDRLPEKLRYLADAPQQDPEGNKTMVRFSRKTKQQYVSSEKDGKATGWSAFYV DGKWVEGKK" gene 1333855..1334829 /gene="cysB" /locus_tag="b1275" /gene_synonym="ECK1269; JW1267" /db_xref="EcoGene:EG10184" /db_xref="GeneID:945771" CDS 1333855..1334829 /gene="cysB" /locus_tag="b1275" /gene_synonym="ECK1269; JW1267" /function="transport; Amino acid biosynthesis: Cysteine" /experiment="N-terminus verified by Edman degradation: PMID 2182030" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0019344 - cysteine biosynthetic process; GO:0006350 - transcription" /note="positive transcriptional regulator for cysteine regulon" /codon_start=1 /transl_table=11 /product="N-acetylserine-responsive cysteine regulon transcriptional activator; autorepressor" /protein_id="NP_415791.1" /db_xref="GI:16129236" /db_xref="ASAP:ABE-0004279" /db_xref="UniProtKB/Swiss-Prot:P0A9F3" /db_xref="EcoGene:EG10184" /db_xref="GeneID:945771" /translation="MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDEL GIQIFSRSGKHLTQVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHT QARYALPNVIKGFIERYPRVSLHMHQGSPTQIADAVSKGNADFAIATEALHLYEDLVM LPCYHWNRAIVVTPDHPLAGKKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTP RIVFTATDADVIKTYVRLGLGVGVIASMAVDPVADPDLVRVDAHDIFSHSTTKIGFRR STFLRSYMYDFIQRFAPHLTRDVVDAAVALRSNEEIEVMFKDIKLPEK" gene 1335124..1335288 /gene="ymiA" /locus_tag="b4522" /gene_synonym="ECK4433" /db_xref="EcoGene:EG14463" /db_xref="GeneID:1450256" CDS 1335124..1335288 /gene="ymiA" /locus_tag="b4522" /gene_synonym="ECK4433" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_588449.2" /db_xref="GI:635341465" /db_xref="UniProtKB/Swiss-Prot:P0CB62" /db_xref="EcoGene:EG14463" /db_xref="GeneID:1450256" /translation="MLISDGDYMRLAMPSGNQEPRRDPELKRKAWLAVFLGSALFWVV VALLIWKVWG" gene 1335291..1335458 /gene="yciX" /locus_tag="b4523" /gene_synonym="ECK1270; JW5198; JW5199" /db_xref="EcoGene:EG14351" /db_xref="GeneID:1450257" CDS 1335291..1335458 /gene="yciX" /locus_tag="b4523" /gene_synonym="ECK1270; JW5198; JW5199" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_588450.2" /db_xref="GI:145698251" /db_xref="ASAP:ABE-0285043" /db_xref="ASAP:ABE-0285044" /db_xref="ASAP:ABE-0285107" /db_xref="UniProtKB/Swiss-Prot:P58094" /db_xref="EcoGene:EG14351" /db_xref="GeneID:1450257" /translation="MVGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFI ELFAEDDQPKQ" gene 1335831..1338506 /gene="acnA" /locus_tag="b1276" /gene_synonym="acn; ECK1271; JW1268" /db_xref="EcoGene:EG11325" /db_xref="GeneID:946724" CDS 1335831..1338506 /gene="acnA" /locus_tag="b1276" /gene_synonym="acn; ECK1271; JW1268" /EC_number="4.2.1.3" /function="enzyme; Energy metabolism, carbon: TCA cycle" /GO_process="GO:0009061 - anaerobic respiration; GO:0006099 - tricarboxylic acid cycle" /note="aconitate hydrase 1" /codon_start=1 /transl_table=11 /product="aconitate hydratase 1; aconitase A" /protein_id="NP_415792.1" /db_xref="GI:16129237" /db_xref="ASAP:ABE-0004283" /db_xref="UniProtKB/Swiss-Prot:P25516" /db_xref="EcoGene:EG11325" /db_xref="GeneID:946724" /translation="MSSTLREASKDTLQAKDKTYHYYSLPLAAKSLGDITRLPKSLKV LLENLLRWQDGNSVTEEDIHALAGWLKNAHADREIAYRPARVLMQDFTGVPAVVDLAA MREAVKRLGGDTAKVNPLSPVDLVIDHSVTVDRFGDDEAFEENVRLEMERNHERYVFL KWGKQAFSRFSVVPPGTGICHQVNLEYLGKAVWSELQDGEWIAYPDTLVGTDSHTTMI NGLGVLGWGVGGIEAEAAMLGQPVSMLIPDVVGFKLTGKLREGITATDLVLTVTQMLR KHGVVGKFVEFYGDGLDSLPLADRATIANMSPEYGATCGFFPIDAVTLDYMRLSGRSE DQVELVEKYAKAQGMWRNPGDEPIFTSTLELDMNDVEASLAGPKRPQDRVALPDVPKA FAASNELEVNATHKDRQPVDYVMNGHQYQLPDGAVVIAAITSCTNTSNPSVLMAAGLL AKKAVTLGLKRQPWVKASLAPGSKVVSDYLAKAKLTPYLDELGFNLVGYGCTTCIGNS GPLPDPIETAIKKSDLTVGAVLSGNRNFEGRIHPLVKTNWLASPPLVVAYALAGNMNI NLASEPIGHDRKGDPVYLKDIWPSAQEIARAVEQVSTEMFRKEYAEVFEGTAEWKGIN VTRSDTYGWQEDSTYIRLSPFFDEMQATPAPVEDIHGARILAMLGDSVTTDHISPAGS IKPDSPAGRYLQGRGVERKDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPGVEGGMTR HLPDSDVVSIYDAAMRYKQEQTPLAVIAGKEYGSGSSRDWAAKGPRLLGIRVVIAESF ERIHRSNLIGMGILPLEFPQGVTRKTLGLTGEEKIDIGDLQNLQPGATVPVTLTRADG SQEVVPCRCRIDTATELTYYQNDGILHYVIRNMLK" gene complement(1338570..1339160) /gene="ribA" /locus_tag="b1277" /gene_synonym="ECK1272; JW1269" /db_xref="EcoGene:EG11331" /db_xref="GeneID:945763" CDS complement(1338570..1339160) /gene="ribA" /locus_tag="b1277" /gene_synonym="ECK1272; JW1269" /EC_number="3.5.4.25" /function="enzyme; Biosynthesis of cofactors, carriers: Riboflavin" /experiment="N-terminus verified by Edman degradation: PMID 8320220" /codon_start=1 /transl_table=11 /product="GTP cyclohydrolase II" /protein_id="NP_415793.1" /db_xref="GI:16129238" /db_xref="ASAP:ABE-0004285" /db_xref="UniProtKB/Swiss-Prot:P0A7I7" /db_xref="EcoGene:EG11331" /db_xref="GeneID:945763" /translation="MQLKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHT PVLARVHSECLTGDALFSLRCDCGFQLEAALTQIAEEGRGILLYHRQEGRNIGLLNKI RAYALQDQGYDTVEANHQLGFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTE AGINIVERVPLIVGRNPNNEHYLDTKAEKMGHLLNK" gene 1339330..1340094 /gene="pgpB" /locus_tag="b1278" /gene_synonym="ECK1273; JW1270" /db_xref="EcoGene:EG10705" /db_xref="GeneID:945863" CDS 1339330..1340094 /gene="pgpB" /locus_tag="b1278" /gene_synonym="ECK1273; JW1270" /EC_number="3.1.3.27" /function="enzyme; Macromolecule synthesis, modification: Phospholipids" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0008654 - phospholipid biosynthetic process" /note="non-essential phosphatidylglycerophosphate phosphatase, membrane bound" /codon_start=1 /transl_table=11 /product="phosphatidylglycerophosphatase B" /protein_id="NP_415794.1" /db_xref="GI:16129239" /db_xref="ASAP:ABE-0004294" /db_xref="UniProtKB/Swiss-Prot:P0A924" /db_xref="EcoGene:EG10705" /db_xref="GeneID:945863" /translation="MRSIARRTAVGAALLLVMPVAVWISGWRWQPGEQSWLLKAAFWV TETVTQPWGVITHLILFGWFLWCLRFRIKAAFVLFAILAAAILVGQGVKSWIKDKVQE PRPFVIWLEKTHHIPVDEFYTLKRAERGNLVKEQLAEEKNIPQYLRSHWQKETGFAFP SGHTMFAASWALLAVGLLWPRRRTLTIAILLVWATGVMGSRLLLGMHWPRDLVVATLI SWALVAVATWLAQRICGPLTPPAEENREIAQREQES" gene 1340243..1340551 /gene="yciS" /locus_tag="b1279" /gene_synonym="ECK1274; JW1271; lapA" /db_xref="EcoGene:EG13904" /db_xref="GeneID:944936" CDS 1340243..1340551 /gene="yciS" /locus_tag="b1279" /gene_synonym="ECK1274; JW1271; lapA" /codon_start=1 /transl_table=11 /product="DUF1049 family inner membrane protein, function unknown" /protein_id="NP_415795.1" /db_xref="GI:16129240" /db_xref="ASAP:ABE-0004298" /db_xref="UniProtKB/Swiss-Prot:P0ACV4" /db_xref="EcoGene:EG13904" /db_xref="GeneID:944936" /translation="MKYLLIFLLVLAIFVISVTLGAQNDQQVTFNYLLAQGEYRISTL LAVLFAAGFAIGWLICGLFWLRVRVSLARAERKIKRLENQLSPATDVAVVPHSSAAKE " gene 1340558..1341727 /gene="yciM" /locus_tag="b1280" /gene_synonym="ECK1275; JW1272; lapB" /db_xref="EcoGene:EG12691" /db_xref="GeneID:944858" CDS 1340558..1341727 /gene="yciM" /locus_tag="b1280" /gene_synonym="ECK1275; JW1272; lapB" /function="putative factor; Not classified" /note="putative heat shock protein" /codon_start=1 /transl_table=11 /product="LPS regulatory protein; putative modulator of LpxC proteolysis" /protein_id="NP_415796.1" /db_xref="GI:16129241" /db_xref="ASAP:ABE-0004300" /db_xref="UniProtKB/Swiss-Prot:P0AB58" /db_xref="EcoGene:EG12691" /db_xref="GeneID:944858" /translation="MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVN FLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLT YEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKA IDVAERLVKLGKDKQRVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSI MMGRVFMAKGEYAKAVESLQRVISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAV EENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRA KESLMVLRDMVGEKVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL" gene 1341921..1342658 /gene="pyrF" /locus_tag="b1281" /gene_synonym="ECK1276; JW1273" /db_xref="EcoGene:EG10809" /db_xref="GeneID:947121" CDS 1341921..1342658 /gene="pyrF" /locus_tag="b1281" /gene_synonym="ECK1276; JW1273" /EC_number="4.1.1.23" /function="enzyme; Pyrimidine ribonucleotide biosynthesis" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion; GO:0006221 - pyrimidine nucleotide biosynthetic process" /codon_start=1 /transl_table=11 /product="orotidine-5'-phosphate decarboxylase" /protein_id="NP_415797.1" /db_xref="GI:16129242" /db_xref="ASAP:ABE-0004304" /db_xref="UniProtKB/Swiss-Prot:P08244" /db_xref="EcoGene:EG10809" /db_xref="GeneID:947121" /translation="MTLTASSSSRAVTNSPVVVALDYHNRDDALAFVDKIDPRDCRLK VGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASG GARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQK CGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYM VIGRPVTQSVDPAQTLKAINASLQRSA" gene 1342658..1342984 /gene="yciH" /locus_tag="b1282" /gene_synonym="ECK1277; JW1274" /db_xref="EcoGene:EG11128" /db_xref="GeneID:947058" CDS 1342658..1342984 /gene="yciH" /locus_tag="b1282" /gene_synonym="ECK1277; JW1274" /codon_start=1 /transl_table=11 /product="initiation factor function partial mimic, SUI1 family" /protein_id="NP_415798.2" /db_xref="GI:90111241" /db_xref="ASAP:ABE-0004307" /db_xref="UniProtKB/Swiss-Prot:P08245" /db_xref="EcoGene:EG11128" /db_xref="GeneID:947058" /translation="MSDSNSRLVYSTETGRIDEPKAAPVRPKGDGVVRIQRQTSGRKG KGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKGMK VKLAGG" gene complement(1343110..1343328) /gene="osmB" /locus_tag="b1283" /gene_synonym="ECK1278; JW1275" /db_xref="EcoGene:EG10679" /db_xref="GeneID:945866" CDS complement(1343110..1343328) /gene="osmB" /locus_tag="b1283" /gene_synonym="ECK1278; JW1275" /function="putative membrane; Osmotic adaptation" /GO_process="GO:0006970 - response to osmotic stress" /note="osmotically inducible lipoprotein" /codon_start=1 /transl_table=11 /product="osmotically and stress inducible lipoprotein" /protein_id="NP_415799.1" /db_xref="GI:16129244" /db_xref="ASAP:ABE-0004309" /db_xref="UniProtKB/Swiss-Prot:P0ADA7" /db_xref="EcoGene:EG10679" /db_xref="GeneID:945866" /translation="MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALG GAVLTDGSTLGTLGGAAVGGVIGHQVGK" gene complement(1343597..1344346) /gene="yciT" /locus_tag="b1284" /gene_synonym="deoT; ECK1279; JW1276" /db_xref="EcoGene:EG13905" /db_xref="GeneID:945869" CDS complement(1343597..1344346) /gene="yciT" /locus_tag="b1284" /gene_synonym="deoT; ECK1279; JW1276" /function="putative regulator; Not classified" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative DEOR-type transcriptional regulator" /codon_start=1 /transl_table=11 /product="global regulator of transcription; DeoR family" /protein_id="NP_415800.1" /db_xref="GI:16129245" /db_xref="ASAP:ABE-0004312" /db_xref="UniProtKB/Swiss-Prot:P76034" /db_xref="EcoGene:EG13905" /db_xref="GeneID:945869" /translation="MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKL SYLRRAHGFAVSLDSDDVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLA RTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHF SKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKECEAIVLTDSSKFGAVHSYSIGPVE RFNRVITDSKIRASDLMHLEHSKLTIHVVDI" gene complement(1344436..1344609) /gene="yciZ" /locus_tag="b4596" /gene_synonym="deoL; ECK4406" /db_xref="EcoGene:EG14460" /db_xref="GeneID:5061509" CDS complement(1344436..1344609) /gene="yciZ" /locus_tag="b4596" /gene_synonym="deoL; ECK4406" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_001165317.1" /db_xref="GI:145698252" /db_xref="UniProtKB/Swiss-Prot:A5A614" /db_xref="EcoGene:EG14460" /db_xref="GeneID:5061509" /translation="MSEFDAQRVAERIDIVLDILVAGDYHSAIHNLEILKAELLRQVA ESTPDIPKAPWEI" gene complement(1344757..1346742) /gene="gmr" /locus_tag="b1285" /gene_synonym="ECK1280; JW1278; yciR" /db_xref="EcoGene:EG13415" /db_xref="GeneID:945868" CDS complement(1344757..1346742) /gene="gmr" /locus_tag="b1285" /gene_synonym="ECK1280; JW1278; yciR" /codon_start=1 /transl_table=11 /product="cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of RNase II stability" /protein_id="NP_415801.1" /db_xref="GI:16129246" /db_xref="ASAP:ABE-0004317" /db_xref="UniProtKB/Swiss-Prot:P77334" /db_xref="EcoGene:EG13415" /db_xref="GeneID:945868" /translation="MKTVRESTTLYNFLGSHNPYWRLTESSDVLRFSTTETTEPDRTL QLSAEQAARIREMTVITSSLMMSLTVDESDLSVHLVGRKINKREWAGNASAWHDTPAV ARDLSHGLSFAEQVVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLF MSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFLIC SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDN FKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMA SRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWRGEVRSLEALVRWQSPER GLIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGINLRVAVNISARQLADQT IFTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGY SSLSQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKE DAFLTKNGINERQGFLFAKPMPAVAFERWYKRYLKRA" gene 1346796..1346900 /gene="ymiB" /locus_tag="b4672" /gene_synonym="ECK4487" /db_xref="EcoGene:EG14477" /db_xref="GeneID:7751616" CDS 1346796..1346900 /gene="ymiB" /locus_tag="b4672" /gene_synonym="ECK4487" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_002791239.1" /db_xref="GI:226524710" /db_xref="UniProtKB/Swiss-Prot:C1P5Z9" /db_xref="EcoGene:EG14477" /db_xref="GeneID:7751616" /translation="MTYMKLTAAKRIVFFIYLFVIQFWKNASFQTKVS" gene complement(1346978..1348912) /gene="rnb" /locus_tag="b1286" /gene_synonym="ECK1281; JW1279" /db_xref="EcoGene:EG11620" /db_xref="GeneID:945864" CDS complement(1346978..1348912) /gene="rnb" /locus_tag="b1286" /gene_synonym="ECK1281; JW1279" /EC_number="3.1.13.1" /function="enzyme; Degradation of RNA" /GO_process="GO:0006401 - RNA catabolic process" /note="RNase II, mRNA degradation" /codon_start=1 /transl_table=11 /product="ribonuclease II" /protein_id="NP_415802.1" /db_xref="GI:16129247" /db_xref="ASAP:ABE-0004320" /db_xref="UniProtKB/Swiss-Prot:P30850" /db_xref="EcoGene:EG11620" /db_xref="GeneID:945864" /translation="MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSY FIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPD HPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVP WWVTLARHNLEKEAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALP DDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN EVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIA EQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEA MIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFC KLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINH RLLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAA EIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVI DVTIAEVRMETRSIIARPVA" gene complement(1348980..1350107) /gene="yciW" /locus_tag="b1287" /gene_synonym="ECK1282; JW5200" /db_xref="EcoGene:EG14262" /db_xref="GeneID:945859" CDS complement(1348980..1350107) /gene="yciW" /locus_tag="b1287" /gene_synonym="ECK1282; JW5200" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_415803.2" /db_xref="GI:90111242" /db_xref="ASAP:ABE-0004322" /db_xref="UniProtKB/Swiss-Prot:P76035" /db_xref="EcoGene:EG14262" /db_xref="GeneID:945859" /translation="MEQRHITGKSHWYHETQSSTTEYDVLPLVPEAAKVSDPFLLDVI LEKETLAPFLSWLDPARVLAVDLFPDQLTVTRSQTFTAYERLSTALTVAQVCGVQRLC NYYSARLTPLPGPDSTRESNHRLAQITQYARQLASSPSIIDNRSRQHLNDVGLTAWDC VIISQIIGFIGFQARTIATFQAYLGHPVRWLPGLEIQNYADASLFADESLRWRSSYEV EKLPEEHTKSSTAELCQLAEILSLHPISLSLLEKLLNSTRGNTQPDNQLAALLCARIN GSPACFATCMDSSNEYKKISTLMRKGENEINQWADRHSVERATVQAIQWLTRAPDRFS AAQFSPLLEHEKSSTQIINLLVWSGLCGWINRLKIALGETY" gene complement(1350251..1351039) /gene="fabI" /locus_tag="b1288" /gene_synonym="ECK1283; envM; gts; JW1281; qmeA" /db_xref="EcoGene:EG11528" /db_xref="GeneID:945870" CDS complement(1350251..1351039) /gene="fabI" /locus_tag="b1288" /gene_synonym="ECK1283; envM; gts; JW1281; qmeA" /EC_number="1.3.1.9" /function="enzyme; Fatty acid and phosphatidic acid biosynthesis" /GO_component="GO:0005737 - cytoplasm" /note="enoyl-[acyl-carrier-protein] reductase (NADH)" /codon_start=1 /transl_table=11 /product="enoyl-[acyl-carrier-protein] reductase, NADH-dependent" /protein_id="NP_415804.1" /db_xref="GI:16129249" /db_xref="ASAP:ABE-0004327" /db_xref="UniProtKB/Swiss-Prot:P0AEK4" /db_xref="EcoGene:EG11528" /db_xref="GeneID:945870" /translation="MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL KGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDG DYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMG LAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRR TVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIAAMNELELK" gene complement(1351407..1351760) /gene="ycjD" /locus_tag="b1289" /gene_synonym="ECK1284; JW1282" /db_xref="EcoGene:EG12653" /db_xref="GeneID:945871" CDS complement(1351407..1351760) /gene="ycjD" /locus_tag="b1289" /gene_synonym="ECK1284; JW1282" /codon_start=1 /transl_table=11 /product="DUF559 family endonuclease-related protein" /protein_id="NP_415805.1" /db_xref="GI:16129250" /db_xref="ASAP:ABE-0004333" /db_xref="UniProtKB/Swiss-Prot:P45736" /db_xref="EcoGene:EG12653" /db_xref="GeneID:945871" /translation="MIDKIKSNARDLRRNLTLQERKLWRYLRSRRFSDFKFRRQHPVG SYILDFACCSARVVVELDGGQHDLAVAYDSRRTSWLESQGWTVLRFWNNEIDCNEETV LENILQELNRRSPSP" gene complement(1351828..1352634) /gene="sapF" /locus_tag="b1290" /gene_synonym="ECK1285; JW1283" /db_xref="EcoGene:EG12305" /db_xref="GeneID:945335" CDS complement(1351828..1352634) /gene="sapF" /locus_tag="b1290" /gene_synonym="ECK1285; JW1283" /function="putative transport; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009063 - cellular amino acid catabolic process" /note="putative ATP-binding protein of peptide transport system" /codon_start=1 /transl_table=11 /product="antimicrobial peptide ABC transporter ATPase" /protein_id="NP_415806.1" /db_xref="GI:16129251" /db_xref="ASAP:ABE-0004339" /db_xref="UniProtKB/Swiss-Prot:P0AAH8" /db_xref="EcoGene:EG12305" /db_xref="GeneID:945335" /translation="MIETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLA IIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSFRSQRIRMIFQDPSTSLN PRQRISQILDFPLRLNTDLEPEQRRKQIIETMRMVGLLPDHVSYYPHMLAPGQKQRLG LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHIS DQVLVMHQGEVVERGSTADVLASPLHELTKRLIAGHFGEALTADAWRKDR" gene complement(1352636..1353628) /gene="sapD" /locus_tag="b1291" /gene_synonym="ECK1286; JW1284; trkE" /db_xref="EcoGene:EG12304" /db_xref="GeneID:946203" CDS complement(1352636..1353628) /gene="sapD" /locus_tag="b1291" /gene_synonym="ECK1286; JW1284; trkE" /function="putative transport; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009063 - cellular amino acid catabolic process" /note="putative ATP-binding protein of peptide transport system" /codon_start=1 /transl_table=11 /product="antimicrobial peptide ABC transporter ATPase" /protein_id="NP_415807.1" /db_xref="GI:16129252" /db_xref="ASAP:ABE-0004342" /db_xref="UniProtKB/Swiss-Prot:P0AAH4" /db_xref="EcoGene:EG12304" /db_xref="GeneID:946203" /translation="MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGS GKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQSCL DPSERVGRQLMQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHD LQMLSQWADKINVLYCGQTVETAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLN TLPGAIPLLEQLPIGCRLGPRCPYAQRECIVTPRLTGAKNHLYACHFPLNMEKE" gene complement(1353628..1354518) /gene="sapC" /locus_tag="b1292" /gene_synonym="ECK1287; JW1285" /db_xref="EcoGene:EG20256" /db_xref="GeneID:945266" CDS complement(1353628..1354518) /gene="sapC" /locus_tag="b1292" /gene_synonym="ECK1287; JW1285" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="homolog of Salmonella peptide transport permease protein; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="antimicrobial peptide transport ABC transporter permease" /protein_id="NP_415808.1" /db_xref="GI:16129253" /db_xref="ASAP:ABE-0004348" /db_xref="UniProtKB/Swiss-Prot:P0AGH5" /db_xref="EcoGene:EG20256" /db_xref="GeneID:945266" /translation="MPYDSVYSEKRPPGTLRTAWRKFYSDASAMVGLYGCAGLAVLCI FGGWFAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGTDDLGRDVLSRLLSGAAPTVGGA FVVTLAATICGLVLGTFAGATHGLRSAVLNHILDTLLAIPSLLLAIIVVAFAGPSLSH AMFAVWLALLPRMVRSIYSMVHDELEKEYVIAARLDGASTLNILWFAVMPNITAGLVT EITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMIS VLLVNLLGDGVRRAIIAGVE" gene complement(1354505..1355470) /gene="sapB" /locus_tag="b1293" /gene_synonym="ECK1288; JW1286" /db_xref="EcoGene:EG20255" /db_xref="GeneID:946191" CDS complement(1354505..1355470) /gene="sapB" /locus_tag="b1293" /gene_synonym="ECK1288; JW1286" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="homolog of Salmonella peptide transport permease protein; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="antimicrobial peptide transport ABC transporter permease" /protein_id="NP_415809.1" /db_xref="GI:16129254" /db_xref="ASAP:ABE-0004350" /db_xref="UniProtKB/Swiss-Prot:P0AGH3" /db_xref="EcoGene:EG20255" /db_xref="GeneID:946191" /translation="MIIFTLRRILLLIVTLFLLTFVGFSLSYFTPHAPLQGASLWNAW VFWFNGLIHWDFGVSSINGQPIAEQLKEVFPATMELCILAFGFALIVGIPVGMIAGIT RHKWQDNLINAIALLGFSIPVFWLALLLTLFCSLTLGWLPVSGRFDLLYEVKPITGFA LIDAWLSDSPWRDEMIMSAIRHMILPVITLSVAPTTEVIRLMRISTIEVYDQNYVKAA ATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAI RQQDYAAISAGVMVCGSLVIIVNVISDILGAMANPLKHKEWYALR" gene complement(1355467..1357110) /gene="sapA" /locus_tag="b1294" /gene_synonym="ECK1289; JW1287" /db_xref="EcoGene:EG20254" /db_xref="GeneID:945873" CDS complement(1355467..1357110) /gene="sapA" /locus_tag="b1294" /gene_synonym="ECK1289; JW1287" /function="putative transport; Not classified" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0009063 - cellular amino acid catabolic process" /note="homolog of Salmonella peptide transport periplasmic protein; periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="antimicrobial peptide transport ABC transporter periplasmic binding protein" /protein_id="NP_415810.1" /db_xref="GI:16129255" /db_xref="ASAP:ABE-0004354" /db_xref="UniProtKB/Swiss-Prot:Q47622" /db_xref="EcoGene:EG20254" /db_xref="GeneID:945873" /translation="MRQVLSSLLVIAGLVSGQAIAAPESPPHADIRDSGFVYCVSGQV NTFNPSKASSGLIVDTLAAQFYDRLLDVDPYTYRLMPELAESWEVLDNGATYRFHLRR DVPFQKTDWFTPTRKMNADDVVFTFQRIFDRNNPWHNVNGSNFPYFDSLQFADNVKSV RKLDNHTVEFRLAQPDASFLWHLATHYASVMSAEYARKLEKEDRQEQLDRQPVGTGPY QLSEYRAGQFIRLQRHDDFWRGKPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPAAS QLSILRDDPRLRLTLRPGMNVAYLAFNTAKPPLNNPAVRHALALAINNQRLMQSIYYG TAETAASILPRASWAYDNEAKITEYNPAKSREQLKSLGLENLTLKLWVPTRSQAWNPS PLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMSHDLTLSGWATDSNDPDSFFRP LLSCAAIHSQTNLAHWCDPKFDSVLRKALSSQQLAARIEAYDEAQSILAQELPILPLA SSLRLQAYRYDIKGLVLSPFGNASFAGVYREKQDEVKKP" repeat_region 1357359..1357392 /note="REP110 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1357423..1357668) /gene="ymjA" /locus_tag="b1295" /gene_synonym="ECK1290; JW1288" /db_xref="EcoGene:EG14295" /db_xref="GeneID:945874" CDS complement(1357423..1357668) /gene="ymjA" /locus_tag="b1295" /gene_synonym="ECK1290; JW1288" /codon_start=1 /transl_table=11 /product="DUF2543 family protein" /protein_id="NP_415811.1" /db_xref="GI:16129256" /db_xref="ASAP:ABE-0004359" /db_xref="UniProtKB/Swiss-Prot:P0ACV8" /db_xref="EcoGene:EG14295" /db_xref="GeneID:945874" /translation="MNHDIPLKYFDIADEYATECAEPVAEAERTPLAHYFQLLLTRLM NNEEISEEAQHEMAAEAGINPVRIDEIAEFLNQWGNE" repeat_region 1357770..1357799 /note="REP111 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1357802..1359187) /gene="puuP" /locus_tag="b1296" /gene_synonym="ECK1291; JW1289; ycjJ" /db_xref="EcoGene:EG13907" /db_xref="GeneID:946287" CDS complement(1357802..1359187) /gene="puuP" /locus_tag="b1296" /gene_synonym="ECK1291; JW1289; ycjJ" /function="transport; Degradation of small molecules: Carbon compounds" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative amino acid/amine transport protein" /codon_start=1 /transl_table=11 /product="putrescine importer" /protein_id="NP_415812.4" /db_xref="GI:90111243" /db_xref="ASAP:ABE-0004362" /db_xref="UniProtKB/Swiss-Prot:P76037" /db_xref="EcoGene:EG13907" /db_xref="GeneID:946287" /translation="MAINSPLNIAAQPGKTRLRKSLKLWQVVMMGLAYLTPMTVFDTF GIVSGISDGHVPASYLLALAGVLFTAISYGKLVRQFPEAGSAYTYAQKSINPHVGFMV GWSSLLDYLFLPMINVLLAKIYLSALFPEVPPWVWVVTFVAILTAANLKSVNLVANFN TLFVLVQISIMVVFIFLVVQGLHKGEGVGTVWSLQPFISENAHLIPIITGATIVCFSF LGFDAVTTLSEETPDAARVIPKAIFLTAVYGGVIFIAASFFMQLFFPDISRFKDPDAA LPEIALYVGGKLFQSIFLCTTFVNTLASGLASHASVSRLLYVMGRDNVFPERVFGYVH PKWRTPALNVIMVGIVALSALFFDLVTATALINFGALVAFTFVNLSVFNHFWRRKGMN KSWKDHFHYLLMPLVGALTVGVLWVNLESTSLTLGLVWASLGGAYLWYLIRRYRKVPL YDGDRTPVSET" gene complement(1359490..1360908) /gene="puuA" /locus_tag="b1297" /gene_synonym="ECK1292; JW5201; ycjK" /db_xref="EcoGene:EG13908" /db_xref="GeneID:946202" CDS complement(1359490..1360908) /gene="puuA" /locus_tag="b1297" /gene_synonym="ECK1292; JW5201; ycjK" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0006542 - glutamine biosynthetic process; GO:0006807 - nitrogen compound metabolic process" /note="putative glutamine synthetase" /codon_start=1 /transl_table=11 /product="glutamate--putrescine ligase" /protein_id="NP_415813.4" /db_xref="GI:90111244" /db_xref="ASAP:ABE-0004365" /db_xref="UniProtKB/Swiss-Prot:P78061" /db_xref="EcoGene:EG13908" /db_xref="GeneID:946202" /translation="METNIVEVENFVQQSEERRGSAFTQEVKRYLERYPNTQYVDVLL TDLNGCFRGKRIPVSSLKKLEKGCYFPASVFAMDILGNVVEEAGLGQEMGEPDRTCVP VLGSLTPSAADPEFIGQMLLTMVDEDGAPFDVEPRNVLNRLWQQLRQRGLFPVVAVEL EFYLLDRQRDAEGYLQPPCAPGTDDRNTQSQVYSVDNLNHFADVLNDIDELAQLQLIP ADGAVAEASPGQFEINLYHTDNVLEACDDALALKRLVRLMAEKHKMHATFMAKPYEEH AGSGMHIHISMQNNRGENVLSDAEGEDSPLLKKMLAGMIDLMPSSMALLAPNVNSYRR FQPGMYVPTQASWGHNNRTVALRIPCGDRHNHRVEYRVAGADANPYLVMAAIFAGILH GLDNELPLQEEVEGNGLEQEGLPFPIRQSDALGEFIENDHLRRYLGERFCHVYHACKN DELLQFERLITETEIEWMLKNA" gene 1361120..1361884 /gene="puuD" /locus_tag="b1298" /gene_synonym="ECK1293; JW1291; ycjL" /db_xref="EcoGene:EG13909" /db_xref="GeneID:945882" CDS 1361120..1361884 /gene="puuD" /locus_tag="b1298" /gene_synonym="ECK1293; JW1291; ycjL" /function="enzyme; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 15590624" /GO_process="GO:0009310 - amine catabolic process" /note="probable amidotransferase subunit" /codon_start=1 /transl_table=11 /product="gamma-glutamyl-gamma-aminobutyrate hydrolase" /protein_id="NP_415814.4" /db_xref="GI:90111245" /db_xref="ASAP:ABE-0004369" /db_xref="UniProtKB/Swiss-Prot:P76038" /db_xref="EcoGene:EG13909" /db_xref="GeneID:945882" /translation="MENIMNNPVIGVVMCRNRLKGHATQTLQEKYLNAIIHAGGLPIA LPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMAIINA ALERRIPIFAICRGLQELVVATGGSLHRKLCEQPELLEHREDPELPVEQQYAPSHEVQ VEEGGLLSALLPECSNFWVNSLHGQGAKVVSPRLRVEARSPDGLVEAVSVINHPFALG VQWHPEWNSSEYALSRILFEGFITACQHHIAEKQRL" gene 1361911..1362468 /gene="puuR" /locus_tag="b1299" /gene_synonym="ECK1294; JW1292; ycjC" /db_xref="EcoGene:EG12431" /db_xref="GeneID:945886" CDS 1361911..1362468 /gene="puuR" /locus_tag="b1299" /gene_synonym="ECK1294; JW1292; ycjC" /function="regulator; Degradation of small molecules: Carbon compounds" /codon_start=1 /transl_table=11 /product="repressor for the divergent puu operons, putrescine inducible" /protein_id="NP_415815.1" /db_xref="GI:16129260" /db_xref="ASAP:ABE-0004371" /db_xref="UniProtKB/Swiss-Prot:P0A9U6" /db_xref="EcoGene:EG12431" /db_xref="GeneID:945886" /translation="MSDEGLAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDK VSPAISTLQKLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLVHNGN PNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINT GIPHSFSNTSAGICRIISAHTPTTF" gene 1362743..1364230 /gene="puuC" /locus_tag="b1300" /gene_synonym="aldH; ECK1295; JW1293" /db_xref="EcoGene:EG10036" /db_xref="GeneID:947003" CDS 1362743..1364230 /gene="puuC" /locus_tag="b1300" /gene_synonym="aldH; ECK1295; JW1293" /EC_number="1.2.1.3" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006113 - fermentation" /note="aldehyde dehydrogenase, prefers NADP over NAD" /codon_start=1 /transl_table=11 /product="gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; succinate semialdehyde dehydrogenase" /protein_id="NP_415816.1" /db_xref="GI:16129261" /db_xref="ASAP:ABE-0004376" /db_xref="UniProtKB/Swiss-Prot:P23883" /db_xref="EcoGene:EG10036" /db_xref="GeneID:947003" /translation="MNFHHLAYWQDKALSLAIENRLFINGEYTAAAENETFETVDPVT QAPLAKIARGKSVDIDRAMSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELA LLETLDTGKPIRHSLRDDIPGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGV IAAIVPWNFPLLLTCWKLGPALAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLN VVTGFGHEAGQALSRHNDIDAIAFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIV FADCPDLQQAASATAAGIFYNQGQVCIAGTRLLLEESIADEFLALLKQQAQNWQPGHP LDPATTMGTLIDCAHADSVHSFIREGESKGQLLLDGRNAGLAAAIGPTIFVDVDPNAS LSREEIFGPVLVVTRFTSEEQALQLANDSQYGLGAAVWTRDLSRAHRMSRRLKAGSVF VNNYNDGDMTVPFGGYKQSGNGRDKSLHALEKFTELKTIWISLEA" gene 1364232..1365512 /gene="puuB" /locus_tag="b1301" /gene_synonym="ECK1296; JW1294; ordL; ycjA" /db_xref="EcoGene:EG11822" /db_xref="GeneID:945072" CDS 1364232..1365512 /gene="puuB" /locus_tag="b1301" /gene_synonym="ECK1296; JW1294; ordL; ycjA" /function="enzyme; Degradation of small molecules: Carbon compounds" /note="probable oxidoreductase" /codon_start=1 /transl_table=11 /product="gamma-glutamylputrescine oxidoreductase" /protein_id="NP_415817.1" /db_xref="GI:16129262" /db_xref="ASAP:ABE-0004378" /db_xref="UniProtKB/Swiss-Prot:P37906" /db_xref="EcoGene:EG11822" /db_xref="GeneID:945072" /translation="MTEHTSSYYAASANKYAPFDTLNESITCDVCVVGGGYTGLSSAL HLAEAGFDVVVLEASRIGFGASGRNGGQLVNSYSRDIDVIEKSYGMDTARMLGSMMFE GGEIIRERIKRYQIDCDYRPGGLFVAMNDKQLATLEEQKENWERYGNKQLELLDANAI RREVASDRYTGALLDHSGGHIHPLNLAIGEADAIRLNGGRVYELSAVTQIQHTTPAVV RTAKGQVTAKYVIVAGNAYLGDKVEPELAKRSMPCGTQVITTERLSEDLARSLIPKNY CVEDCNYLLDYYRLTADNRLLYGGGVVYGARDPDDVERLVVPKLLKTFPQLKGVKIDY RWTGNFLLTLSRMPQFGRLDTNIYYMQGYSGHGVTCTHLAGRLIAELLRGDAERFDAF ANLPHYPFPGGRTLRVPFTAMGAAYYSLRDRLGV" gene 1365550..1366815 /gene="puuE" /locus_tag="b1302" /gene_synonym="ECK1297; goaG; JW1295" /db_xref="EcoGene:EG13187" /db_xref="GeneID:945446" CDS 1365550..1366815 /gene="puuE" /locus_tag="b1302" /gene_synonym="ECK1297; goaG; JW1295" /EC_number="2.6.1.19" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009310 - amine catabolic process; GO:0008615 - pyridoxine biosynthetic process" /note="4-aminobutyrate aminotransferase" /codon_start=1 /transl_table=11 /product="4-aminobutyrate aminotransferase, PLP-dependent" /protein_id="NP_415818.1" /db_xref="GI:16129263" /db_xref="ASAP:ABE-0004380" /db_xref="UniProtKB/Swiss-Prot:P50457" /db_xref="EcoGene:EG13187" /db_xref="GeneID:945446" /translation="MSNNEFHQRRLSATPRGVGVMCNFFAQSAENATLKDVEGNEYID FAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQA KTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGP FPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPK ELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGGMPLS GVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTL IDAKESVPAIAAVRGLGSMIAVEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYG NVIRFLYPLTIPDAQFDAAMKILQDALSD" repeat_region 1366833..1366913 /note="RIP112 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(1366935..1367912) /gene="pspF" /locus_tag="b1303" /gene_synonym="ECK1298; JW1296; ycjB" /db_xref="EcoGene:EG12344" /db_xref="GeneID:945683" CDS complement(1366935..1367912) /gene="pspF" /locus_tag="b1303" /gene_synonym="ECK1298; JW1296; ycjB" /function="regulator; Phage-related functions and prophages" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="psp operon transcriptional activator" /protein_id="NP_415819.4" /db_xref="GI:90111246" /db_xref="ASAP:ABE-0004383" /db_xref="UniProtKB/Swiss-Prot:P37344" /db_xref="EcoGene:EG12344" /db_xref="GeneID:945683" /translation="MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKEL IASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGG TLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGT FRADLLDRLAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLL NYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLP LDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI" gene 1368079..1368747 /gene="pspA" /locus_tag="b1304" /gene_synonym="cog; ECK1299; JW1297" /db_xref="EcoGene:EG10776" /db_xref="GeneID:945887" CDS 1368079..1368747 /gene="pspA" /locus_tag="b1304" /gene_synonym="cog; ECK1299; JW1297" /function="factor; Phage-related functions and prophages" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="phage shock protein, inner membrane protein" /codon_start=1 /transl_table=11 /product="regulatory protein for phage-shock-protein operon" /protein_id="NP_415820.1" /db_xref="GI:16129265" /db_xref="ASAP:ABE-0004387" /db_xref="UniProtKB/Swiss-Prot:P0AFM6" /db_xref="EcoGene:EG10776" /db_xref="GeneID:945887" /translation="MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVR STSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIK SLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGK LDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAELKADDAISEQLAQLKAKMK QDNQ" gene 1368801..1369025 /gene="pspB" /locus_tag="b1305" /gene_synonym="ECK1300; JW1298" /db_xref="EcoGene:EG10777" /db_xref="GeneID:945893" CDS 1368801..1369025 /gene="pspB" /locus_tag="b1305" /gene_synonym="ECK1300; JW1298" /function="IS, phage, Tn; Phage-related functions and prophages" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="phage shock protein" /codon_start=1 /transl_table=11 /product="psp operon transcription co-activator" /protein_id="NP_415821.1" /db_xref="GI:16129266" /db_xref="ASAP:ABE-0004389" /db_xref="UniProtKB/Swiss-Prot:P0AFM9" /db_xref="EcoGene:EG10777" /db_xref="GeneID:945893" /translation="MSALFLAIPLTIFVLFVLPIWLWLHYSNRSGRSELSQSEQQRLA QLADEAKRMRERIQALESILDAEHPNWRDR" gene 1369025..1369384 /gene="pspC" /locus_tag="b1306" /gene_synonym="ECK1301; JW1299" /db_xref="EcoGene:EG10778" /db_xref="GeneID:945499" CDS 1369025..1369384 /gene="pspC" /locus_tag="b1306" /gene_synonym="ECK1301; JW1299" /function="factor; Phage-related functions and prophages" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="phage shock protein: activates phage shock-protein expression" /codon_start=1 /transl_table=11 /product="psp operon transcription co-activator" /protein_id="NP_415822.1" /db_xref="GI:16129267" /db_xref="ASAP:ABE-0004391" /db_xref="UniProtKB/Swiss-Prot:P0AFN2" /db_xref="EcoGene:EG10778" /db_xref="GeneID:945499" /translation="MAGINLNKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLS IFFGLALFTLVAYIILSFALDPMPDNMAFGEQLPSSSELLDEVDRELAASETRLREME RYVTSDTFTLRSRFRQL" gene 1369393..1369614 /gene="pspD" /locus_tag="b1307" /gene_synonym="ECK1302; JW1300" /db_xref="EcoGene:EG10779" /db_xref="GeneID:945635" CDS 1369393..1369614 /gene="pspD" /locus_tag="b1307" /gene_synonym="ECK1302; JW1300" /function="IS, phage, Tn; Phage-related functions and prophages" /note="phage shock protein" /codon_start=1 /transl_table=11 /product="peripheral inner membrane phage-shock protein" /protein_id="NP_415823.1" /db_xref="GI:16129268" /db_xref="ASAP:ABE-0004394" /db_xref="UniProtKB/Swiss-Prot:P0AFV8" /db_xref="EcoGene:EG10779" /db_xref="GeneID:945635" /translation="MNTRWQQAGQKVKPGFKLAGKLVLLTALRYGPAGVAGWAIKSVA RRPLKMLLAVALEPLLSRAANKLAQRYKR" gene 1369689..1370003 /gene="pspE" /locus_tag="b1308" /gene_synonym="ECK1303; JW1301" /db_xref="EcoGene:EG10780" /db_xref="GeneID:945652" CDS 1369689..1370003 /gene="pspE" /locus_tag="b1308" /gene_synonym="ECK1303; JW1301" /EC_number="2.8.1.1" /function="IS, phage, Tn; Phage-related functions and prophages" /note="phage shock protein" /codon_start=1 /transl_table=11 /product="thiosulfate:cyanide sulfurtransferase (rhodanese)" /protein_id="NP_415824.1" /db_xref="GI:16129269" /db_xref="ASAP:ABE-0004397" /db_xref="UniProtKB/Swiss-Prot:P23857" /db_xref="EcoGene:EG10780" /db_xref="GeneID:945652" /translation="MFKKGLLALALVFSLPVFAAEHWIDVRVPEQYQQEHVQGAINIP LKEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLKDIAMPKV KG" gene 1370216..1371895 /gene="ycjM" /locus_tag="b1309" /gene_synonym="ECK1304; JW1302" /db_xref="EcoGene:EG13910" /db_xref="GeneID:945659" CDS 1370216..1371895 /gene="ycjM" /locus_tag="b1309" /gene_synonym="ECK1304; JW1302" /function="putative enzyme; Not classified" /GO_process="GO:0000272 - polysaccharide catabolic process" /note="putative polysaccharide hydrolase" /codon_start=1 /transl_table=11 /product="alpha amylase catalytic domain family protein" /protein_id="NP_415825.4" /db_xref="GI:90111247" /db_xref="ASAP:ABE-0004400" /db_xref="UniProtKB/Swiss-Prot:P76041" /db_xref="EcoGene:EG13910" /db_xref="GeneID:945659" /translation="MKQKITDYLDEIYGGTFTATHLQKLVTRLESAKRLITQRRKKHW DESDVVLITYADQFHSNDLKPLPTFNQFYHQWLQSIFSHVHLLPFYPWSSDDGFSVID YHQVASEAGEWQDIQQLGECSHLMFDFVCNHMSAKSEWFKNYLQQHPGFEDFFIAVDP QTDLSAVTRPRALPLLTPFQMRDHSTRHLWTTFSDDQIDLNYRSPEVLLAMVDVLLCY LAKGAEYVRLDAVGFMWKEPGTSCIHLEKTHLIIKLLRSIIDNVAPGTVIITETNVPH KDNIAYFGAGDDEAHMVYQFSLPPLVLHAVQKQNVEALCAWAQNLTLPSSNTTWFNFL ASHDGIGLNPLRGLLPESEILELVEALQQEGALVNWKNNPDGTRSPYEINVTYMDALS RRESSDEERCARFILAHAILLSFPGVPAIYIQSILGSRNDYAGVEKLGYNRAINRKKY HSKEITRELNDEATLRHAVYHELSRLITLRRSHNEFHPDNNFTIDTINSSVMRIPRSN ADGNCLTGLFNVSKNIQHVNITNLHGRDLISEVDILGNEITLRPWQVMWIK" gene 1371909..1373201 /gene="ycjN" /locus_tag="b1310" /gene_synonym="ECK1305; JW1303" /db_xref="EcoGene:EG13911" /db_xref="GeneID:945696" CDS 1371909..1373201 /gene="ycjN" /locus_tag="b1310" /gene_synonym="ECK1305; JW1303" /function="putative transport; Not classified" /GO_component="GO:0042597 - periplasmic space" /codon_start=1 /transl_table=11 /product="putative ABC sugar transporter periplasmic binding protein" /protein_id="NP_415826.1" /db_xref="GI:16129271" /db_xref="ASAP:ABE-0004402" /db_xref="UniProtKB/Swiss-Prot:P76042" /db_xref="EcoGene:EG13911" /db_xref="GeneID:945696" /translation="MIKSKIVLLSALVSCALISGCKEENKTNVSIEFMHSSVEQERQA VISKLIARFEKENPGITVKQVPVEEDAYNTKVITLSRSGSLPEVIETSHDYAKVMDKE QLIDRKAVATVISNVGEGAFYDGVLRIVRTEDGSAWTGVPVSAWIGGIWYRKDVLAKA GLEEPKNWQQLLDVAQKLNDPANKKYGIALPTAESVLTEQSFSQFALSNQANVFNAEG KITLDTPEMMQALTYYRDLTANTMPGSNDIMEVKDAFMNGTAPMAIYSTYILPAVIKE GDPKNVGFVVPTEKNSAVYGMLTSLTITAGQKTEETEAAEKFVTFMEQADNIADWVMM SPGAALPVNKAVVTTATWKDNDVIKALGELPNQLIGELPNIQVFGAVGDKNFTRMGDV TGSGVVSSMVHNVTVGKADLSTTLQASQKKLDELIEQH" gene 1373222..1374103 /gene="ycjO" /locus_tag="b1311" /gene_synonym="ECK1306; JW1304" /db_xref="EcoGene:EG13912" /db_xref="GeneID:945888" CDS 1373222..1374103 /gene="ycjO" /locus_tag="b1311" /gene_synonym="ECK1306; JW1304" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative binding-protein dependent transport protein" /codon_start=1 /transl_table=11 /product="putative sugar ABC transporter permease" /protein_id="NP_415827.1" /db_xref="GI:16129272" /db_xref="ASAP:ABE-0004405" /db_xref="UniProtKB/Swiss-Prot:P0AFR7" /db_xref="EcoGene:EG13912" /db_xref="GeneID:945888" /translation="MNRLFSGRSDMPFALLLLAPSLLLLGGLVAWPMVSNIEISFLRL PLNPNIESTFVGVSNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNREF RLRKTARSLVILSYVTPSISLVFAWKYMFNNGYGIVNYLGVDLLHLYEQAPLWFDNPG SSFVLVVLFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMP VLATVVTLRTIWMFYMFADVYLLTTKVDILGVYLYKTAFAFNDLGKAAAISVVLFIII FAVILLTRKRVNLNGNK" gene 1374090..1374932 /gene="ycjP" /locus_tag="b1312" /gene_synonym="ECK1307; JW1305" /db_xref="EcoGene:EG13913" /db_xref="GeneID:945892" CDS 1374090..1374932 /gene="ycjP" /locus_tag="b1312" /gene_synonym="ECK1307; JW1305" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport system permease protein" /codon_start=1 /transl_table=11 /product="putative sugar ABC transporter permease" /protein_id="NP_415828.1" /db_xref="GI:16129273" /db_xref="ASAP:ABE-0004409" /db_xref="UniProtKB/Swiss-Prot:P77716" /db_xref="EcoGene:EG13913" /db_xref="GeneID:945892" /translation="MATNKRTLSRIGFYCGLALFLIITLFPFFVMLMTSFKGAKEAIS LHPTLLPQQWTLEHYVDIFNPMIFPFVDYFRNSLVVSVVSSVVAVFLGILGAYALSRL RFKGRMTINASFYTVYMFSGILLVVPLFKIITALGIYDTEMALIITMVTQTLPTAVFM LKSYFDTIPDEIEEAAMMDGLNRLQIIFRITVPLAMSGLISVFVYCFMVAWNDYLFAS IFLSSASNFTLPVGLNALFSTPDYIWGRMMAASLVTALPVVIMYALSERFIKSGLTAG GVKG" gene 1374963..1376015 /gene="ycjQ" /locus_tag="b1313" /gene_synonym="ECK1308; JW1306" /db_xref="EcoGene:EG13914" /db_xref="GeneID:945971" CDS 1374963..1376015 /gene="ycjQ" /locus_tag="b1313" /gene_synonym="ECK1308; JW1306" /function="putative enzyme; Not classified" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="putative Zn-dependent NAD(P)-binding oxidoreductase" /protein_id="NP_415829.1" /db_xref="GI:16129274" /db_xref="ASAP:ABE-0004412" /db_xref="UniProtKB/Swiss-Prot:P76043" /db_xref="EcoGene:EG13914" /db_xref="GeneID:945971" /translation="MKKLVATAPRVAALVEYEDRAILANEVKIRVRFGAPKHGTEVVD FRAASPFIDEDFNGEWQMFTPRPADAPRGIEFGKFQLGNMVVGDIIECGSDVTDYAVG DSVCGYGPLSETVIINAVNNYKLRKMPQGSSWKNAVCYDPAQFAMSGVRDANVRVGDF VVVVGLGAIGQIAIQLAKRAGASVVIGVDPIAHRCDIARRHGADFCLNPIGTDVGKEI KTLTGKQGADVIIETSGYADALQSALRGLAYGGTISYVAFAKPFAEGFNLGREAHFNN AKIVFSRACSEPNPDYPRWSRKRIEETCWELLMNGYLNCEDLIDPVVTFANSPESYMQ YVDQHPEQSIKMGVTF" gene 1376034..1376822 /gene="ycjR" /locus_tag="b1314" /gene_synonym="ECK1309; JW5202" /db_xref="EcoGene:EG13915" /db_xref="GeneID:947427" CDS 1376034..1376822 /gene="ycjR" /locus_tag="b1314" /gene_synonym="ECK1309; JW5202" /function="putative factor; Not classified" /codon_start=1 /transl_table=11 /product="putative TIM alpha/beta barrel enzyme" /protein_id="NP_415830.2" /db_xref="GI:90111248" /db_xref="ASAP:ABE-0004414" /db_xref="UniProtKB/Swiss-Prot:P76044" /db_xref="EcoGene:EG13915" /db_xref="GeneID:947427" /translation="MKIGTQNQAFFPENILEKFRYIKEMGFDGFEIDGKLLVNNIEEV KAAIKETGLPVTTACGGYDGWIGDFIEERRLNGLKQIERILEALAEVGGKGIVVPAAW GMFTFRLPPMTSPRSLDGDRKMVSDSLRVLEQVAARTGTVVYLEPLNRYQDHMINTLA DARRYIVENDLKHVQIIGDFYHMNIEEDNLAQALHDNRDLLGHVHIADNHRYQPGSGT LDFHALFEQLRADNYQGYVVYEGRIRAEDPAQAYRDSLAWLRTC" gene 1376832..1377887 /gene="ycjS" /locus_tag="b1315" /gene_synonym="ECK1310; JW1308" /db_xref="EcoGene:EG13916" /db_xref="GeneID:948589" CDS 1376832..1377887 /gene="ycjS" /locus_tag="b1315" /gene_synonym="ECK1310; JW1308" /function="putative enzyme; Not classified" /note="putative dehydrogenase" /codon_start=1 /transl_table=11 /product="putative NADH-binding oxidoreductase" /protein_id="NP_415831.1" /db_xref="GI:16129276" /db_xref="ASAP:ABE-0004416" /db_xref="UniProtKB/Swiss-Prot:P77503" /db_xref="EcoGene:EG13916" /db_xref="GeneID:948589" /translation="MKSAMTSSPLRVAIIGAGQVADKVHASYYCTRNDLELVAVCDSR LSQAQALAEKYGNASVWDDPQAMLLAVKPDVVSVCSPNRFHYEHTLMALEAGCHVMCE KPPAMTPEQAREMCDTARKLGKVLAYDFHHRFALDTQQLREQVTNGVLGEIYVTTARA LRRCGVPGWGVFTNKELQGGGPLIDIGIHMLDAAMYVLGFPAVKSVNAHSFQKIGTQK SCGQFGEWDPATYSVEDSLFGTIEFHNGGILWLETSFALNIREQSIMNVSFCGDKAGA TLFPAHIYTDNNGELMTLMQREIADDNRHLRSMEAFINHVQGKPVMIADAEQGYIIQQ LVAALYQSAETGTRVEL" gene 1377884..1380151 /gene="ycjT" /locus_tag="b1316" /gene_synonym="ECK1311; JW1309" /db_xref="EcoGene:EG13917" /db_xref="GeneID:945895" CDS 1377884..1380151 /gene="ycjT" /locus_tag="b1316" /gene_synonym="ECK1311; JW1309" /codon_start=1 /transl_table=11 /product="putative family 65 glycosyl hydrolase" /protein_id="NP_415832.1" /db_xref="GI:16129277" /db_xref="ASAP:ABE-0004418" /db_xref="UniProtKB/Swiss-Prot:P77154" /db_xref="EcoGene:EG13917" /db_xref="GeneID:945895" /translation="MTRPVTLSEPHFSQHTLNKYASLMAQGNGYLGLRASHEEDYTRQ TRGMYLAGLYHRAGKGEINELVNLPDVVGMEIAINGEVFSLSHEAWQRELDFASGELR RNVVWRTSNGSGYTIASRRFVSADQLPLIALEITITPLDADASVLISTGIDATQTNHG RQHLDETQVRVFGQHLMQGSYTTQDGRSDVAISCCCKVSGDVQQCYTAKERRLLQHTS AQLHAGETMTLQKLVWIDWRDDRQAALDEWGSASLRQLEMCAQQSYDQLLAASTENWR QWWQKRRITVNGGEAHDQQALDYALYHLRIMTPAHDERSSIAAKGLTGEGYKGHVFWD TEVFLLPFHLFSDPTVARSLLRYRWHNLPGAQEKARRNGWQGALFPWESARSGEEETP EFAAINIRTGLRQKVASAQAEHHLVADIAWAVIQYWQTTGDESFIAHEGMALLLETAK FWISRAVRVNDRLEIHDVIGPDEYTEHVNNNAYTSYMARYNVQQALNIARQFGCSDDA FIHRAEMFLKELWMPEIQPDGVLPQDDSFMAKPAINLAKYKAAAGKQTILLDYSRAEV NEMQILKQADVVMLNYMLPEQFSAASCLANLQFYEPRTIHDSSLSKAIHGIVAARCGL LTQSYQFWREGTEIDLGADPHSCDDGIHAAATGAIWLGAIQGFAGVSVRDGELHLNPA LPEQWQQLSFPLFWQGCELQVTLDAQRIAIRTSAPVSLRLNGQLITVAEESVFCLGDF ILPFNGTATKHQEDE" gene 1380148..1380807 /gene="ycjU" /locus_tag="b1317" /gene_synonym="ECK1312; JW1310" /db_xref="EcoGene:EG13918" /db_xref="GeneID:945891" CDS 1380148..1380807 /gene="ycjU" /locus_tag="b1317" /gene_synonym="ECK1312; JW1310" /function="enzyme; Not classified" /note="putative beta-phosphoglucomutase" /codon_start=1 /transl_table=11 /product="beta-phosphoglucomutase" /protein_id="NP_415833.1" /db_xref="GI:16129278" /db_xref="ASAP:ABE-0004420" /db_xref="UniProtKB/Swiss-Prot:P77366" /db_xref="EcoGene:EG13918" /db_xref="GeneID:945891" /translation="MKLQGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESL KGISRDESLRRILQHGGKEGDFNSQERAQLAYRKNLLYVHSLRELTVNAVLPGIRSLL ADLRAQQISVGLASVSLNAPTILAALELREFFTFCADASQLKNSKPDPEIFLAACAGL GVPPQACIGIEDAQAGIDAINASGMRSVGIGAGLTGAQLLLPSTESLTWPRLSAFWQN V" gene 1380821..1381902 /gene="ycjV" /locus_tag="b4524" /gene_synonym="ECK1313; JW1311; ymjB" /pseudo /db_xref="EcoGene:EG13919" /db_xref="GeneID:4306141" CDS join(1380821..1381777,1381777..1381902) /gene="ycjV" /locus_tag="b4524" /gene_synonym="ECK1313; JW1311; ymjB" /GO_component="GO:0005737 - cytoplasm" /note="pseudogene; putative ATP-binding component of a transport system" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0004422" /db_xref="ASAP:ABE-0285045" /db_xref="UniProtKB/Swiss-Prot:P77481" /db_xref="EcoGene:EG13919" /db_xref="GeneID:4306141" gene 1381947..1382852 /gene="ompG" /locus_tag="b1319" /gene_synonym="ECK1315; JW1312" /db_xref="EcoGene:EG13428" /db_xref="GeneID:945889" CDS 1381947..1382852 /gene="ompG" /locus_tag="b1319" /gene_synonym="ECK1315; JW1312" /function="membrane; Outer membrane constituents" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="outer membrane protein" /codon_start=1 /transl_table=11 /product="outer membrane porin G" /protein_id="NP_415835.1" /db_xref="GI:16129280" /db_xref="ASAP:ABE-0004425" /db_xref="UniProtKB/Swiss-Prot:P76045" /db_xref="EcoGene:EG13428" /db_xref="GeneID:945889" /translation="MKKLLPCTALVMCAGMACAQAEERNDWHFNIGAMYEIENVEGYG EDMDGLAEPSVYFNAANGPWRIALAYYQEGPVDYSAGKRGTWFDRPELEVHYQFLEND DFSFGLTGGFRNYGYHYVDEPGKDTANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFAN DLNTTGYADTRVETETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYL PLTLGNHSVTPYTRIGLDRWSNWDWQDDIEREGHDFNRVGLFYGYDFQNGLSVSLEYA FEWQDHDEGDSDKFHYAGVGVNYSF" repeat_region 1382867..1382940 /note="REP113 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(1382963..1383961) /gene="ycjW" /locus_tag="b1320" /gene_synonym="ECK1316; JW1313" /db_xref="EcoGene:EG13920" /db_xref="GeneID:945875" CDS complement(1382963..1383961) /gene="ycjW" /locus_tag="b1320" /gene_synonym="ECK1316; JW1313" /function="putative regulator; Not classified" /GO_component="GO:0042597 - periplasmic space" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative LACI-type transcriptional regulator" /codon_start=1 /transl_table=11 /product="LacI family putative transcriptional repressor" /protein_id="NP_415836.1" /db_xref="GI:16129281" /db_xref="ASAP:ABE-0004428" /db_xref="UniProtKB/Swiss-Prot:P77615" /db_xref="EcoGene:EG13920" /db_xref="GeneID:945875" /translation="MSPTIYDIARVAGVSKSTVSRVLNKQTNISPEAREKVLRAIEEL QYQPNKLARALTSSGFDAIMVISTRSTKTTAGNPFFSEVLHAITAKAEEEGFDVILQT SHNPAEDLQKCESKIKQKMIKGIIMLSSPADESFFAQLDKYDIPVVVIGKVEGQYAHV YSVDTDNFGDSIALTDALIESGHQNIACLHAPLDVHVSVDRVNGYKQSLAAHNIAVRD EWIVDGGYTHETALKAARQLLSQSPLPEAVFATDSLKLMSIYRAAAEKNIAIPQQLAV VGYSNETLSFILTPAPGGIDVPTQELGQQSCELLFRLISGKPSPQNITVATHMTLK" gene 1384117..1385514 /gene="ycjX" /locus_tag="b1321" /gene_synonym="ECK1317; JW1314" /db_xref="EcoGene:EG13921" /db_xref="GeneID:945872" CDS 1384117..1385514 /gene="ycjX" /locus_tag="b1321" /gene_synonym="ECK1317; JW1314" /function="putative enzyme; Not classified" /note="putative EC 2.1 enzymes" /codon_start=1 /transl_table=11 /product="DUF463 family protein, puatative P-loop NTPase" /protein_id="NP_415837.1" /db_xref="GI:16129282" /db_xref="ASAP:ABE-0004433" /db_xref="UniProtKB/Swiss-Prot:P76046" /db_xref="EcoGene:EG13921" /db_xref="GeneID:945872" /translation="MKRLKNELNALVNRGVDRHLRLAVTGLSRSGKTAFITAMVNQLL NIHAGARLPLLSAVREERLLGVKRIPQRDFGIPRFTYDEGLAQLYGDPPAWPTPTRGV SEIRLALRFKSNDSLLRHFKDTSTLYLEIVDYPGEWLLDLPMLAQDYLSWSRQMTGLL NGQRGEWSAKWRMMSEGLDPLAPADENRLADIAAAWTDYLHHCKEQGLHFIQPGRFVL PGDMAGAPALQFFPWPDVDTWGESKLAQADKHTNAGMLRERFNYYCEKVVKGFYKNHF LRFDRQIVLVDCLQPLNSGPQAFNDMRLALTQLMQSFHYGQRTLFRRLFSPVIDKLLF AATKADHVTIDQHANMVSLLQQLIQDAWQNAAFEGISMDCLGLASVQATTSGIIDVNG EKIPALRGNRLSDGAPLTVYPGEVPARLPGQAFWDKQGFQFEAFRPQVMDVDKPLPHI RLDAALEFLIGDKLR" gene 1385511..1386572 /gene="ycjF" /locus_tag="b1322" /gene_synonym="ECK1318; JW1315" /db_xref="EcoGene:EG12870" /db_xref="GeneID:945878" CDS 1385511..1386572 /gene="ycjF" /locus_tag="b1322" /gene_synonym="ECK1318; JW1315" /codon_start=1 /transl_table=11 /product="UPF0283 family inner membrane protein" /protein_id="NP_415838.1" /db_xref="GI:16129283" /db_xref="ASAP:ABE-0004436" /db_xref="UniProtKB/Swiss-Prot:P0A8R7" /db_xref="EcoGene:EG12870" /db_xref="GeneID:945878" /translation="MTEPLKPRIDFDGPLEVDQNPKFRAQQTFDENQAQNFAPATLDE AQEEEGQVEAVMDAALRPKRSLWRKMVMGGLALFGASVVGQGVQWTMNAWQTQDWVAL GGCAAGALIIGAGVGSVVTEWRRLWRLRQRAHERDEARDLLHSHGTGKGRAFCEKLAQ QAGIDQSHPALQRWYASIHETQNDREVVSLYAHLVQPVLDAQARREISRSAAESTLMI AVSPLALVDMAFIAWRNLRLINRIATLYGIELGYYSRLRLFKLVLLNIAFAGASELVR EVGMDWMSQDLAARLSTRAAQGIGAGLLTARLGIKAMELCRPLPWIDDDKPRLGDFRR QLIGQVKETLQKGKTPSEK" gene 1386720..1388261 /gene="tyrR" /locus_tag="b1323" /gene_synonym="ECK1319; JW1316" /db_xref="EcoGene:EG11042" /db_xref="GeneID:945879" CDS 1386720..1388261 /gene="tyrR" /locus_tag="b1323" /gene_synonym="ECK1319; JW1316" /function="regulator; Transport of small molecules: Amino acids, amines" /experiment="N-terminus verified by Edman degradation: PMID 8444880" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="transcriptional regulation of aroF, aroG, tyrA and aromatic amino acid transport" /codon_start=1 /transl_table=11 /product="aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase" /protein_id="NP_415839.1" /db_xref="GI:16129284" /db_xref="ASAP:ABE-0004440" /db_xref="UniProtKB/Swiss-Prot:P07604" /db_xref="EcoGene:EG11042" /db_xref="GeneID:945879" /translation="MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFA ELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKV DMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLME ITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVE QAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF GHAPEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVR VICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATV AVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ KKNEE" repeat_region 1388272..1388296 /note="REP114 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1388305..1388811) /gene="tpx" /locus_tag="b1324" /gene_synonym="ECK1320; JW1317; yzzJ" /db_xref="EcoGene:EG12672" /db_xref="GeneID:945880" CDS complement(1388305..1388811) /gene="tpx" /locus_tag="b1324" /gene_synonym="ECK1320; JW1317; yzzJ" /EC_number="1.11.1.-" /function="enzyme; Detoxification" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006805 - xenobiotic metabolic process" /note="thiol peroxidase" /codon_start=1 /transl_table=11 /product="lipid hydroperoxide peroxidase" /protein_id="NP_415840.1" /db_xref="GI:16129285" /db_xref="ASAP:ABE-0004442" /db_xref="UniProtKB/Swiss-Prot:P0A862" /db_xref="EcoGene:EG12672" /db_xref="GeneID:945880" /translation="MSQTVHFQGNPVTVANSIPQAGSKAQTFTLVAKDLSDVTLGQFA GKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISADLPFAQSRFCGAEGLNN VITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLVDEITTEPDYE AALAVLKA" gene 1388930..1389895 /gene="ycjG" /locus_tag="b1325" /gene_synonym="ECK1321; JW1318; ycjH" /db_xref="EcoGene:EG13228" /db_xref="GeneID:946013" CDS 1388930..1389895 /gene="ycjG" /locus_tag="b1325" /gene_synonym="ECK1321; JW1318; ycjH" /function="putative enzyme; Not classified" /note="putative muconate cycloisomerase I" /codon_start=1 /transl_table=11 /product="L-Ala-D/L-Glu epimerase" /protein_id="NP_415841.4" /db_xref="GI:90111249" /db_xref="ASAP:ABE-0004448" /db_xref="UniProtKB/Swiss-Prot:P51981" /db_xref="EcoGene:EG13228" /db_xref="GeneID:946013" /translation="MRTVKVFEEAWPLHTPFVIARGSRSEARVVVVELEEEGIKGTGE CTPYPRYGESDASVMAQIMSVVPQLEKGLTREELQKILPAGAARNALDCALWDLAARR QQQSLADLIGITLPETVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLISER MVAIRTAVPDATLIVDANESWRAEGLAARCQLLADLGVAMLEQPLPAQDDAALENFIH PLPICADESCHTRSNLKALKGRYEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCM LCTSRAISAALPLVPQVSFADLDGPTWLAVDVEPALQFTTGELHL" gene complement(1389870..1390598) /gene="mpaA" /locus_tag="b1326" /gene_synonym="ECK1322; JW1319; ycjI" /db_xref="EcoGene:EG13906" /db_xref="GeneID:945969" CDS complement(1389870..1390598) /gene="mpaA" /locus_tag="b1326" /gene_synonym="ECK1322; JW1319; ycjI" /function="enzyme; Not classified" /note="putative carboxypeptidase" /codon_start=1 /transl_table=11 /product="murein peptide amidase A" /protein_id="NP_415842.2" /db_xref="GI:226524711" /db_xref="ASAP:ABE-0004450" /db_xref="UniProtKB/Swiss-Prot:P0ACV6" /db_xref="EcoGene:EG13906" /db_xref="GeneID:945969" /translation="MTVTRPRAERGAFPPGTEHYGRSLLGAPLIWFPAPAASRESGLI LAGTHGDENSSVVTLSCALRTLTPSLRRHHVVLCVNPDGCQLGLRANANGVDLNRNFP AANWKEGETVYRWNSAAEERDVVLLTGDKPGSEPETQALCQLIHRIQPAWVVSFHDPL ACIEDPRHSELGEWLAQAFELPLVTSVGYETPGSFGSWCADLNLHCITAEFPPISSDE ASEKYLFAMANLLRWHPKDAIRPS" gene complement(1390725..1390862) /gene="ymjC" /locus_tag="b4525" /gene_synonym="ECK1323; JW5960" /pseudo /db_xref="EcoGene:EG14420" /db_xref="GeneID:1450258" CDS complement(1390725..1390862) /gene="ymjC" /locus_tag="b4525" /gene_synonym="ECK1323; JW5960" /note="pseudogene" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0285046" /db_xref="UniProtKB/Swiss-Prot:Q2EER5" /db_xref="EcoGene:EG14420" /db_xref="GeneID:1450258" gene complement(1390868..1390933) /gene="ymjD" /locus_tag="b4673" /gene_synonym="ECK4488" /pseudo /db_xref="EcoGene:EG14478" /db_xref="GeneID:7751617" CDS complement(1390868..1390933) /gene="ymjD" /locus_tag="b4673" /gene_synonym="ECK4488" /note="pseudogene fragment, MhpC family" /pseudo /codon_start=1 /transl_table=11 /db_xref="UniProtKB/Swiss-Prot:P0CD93" /db_xref="EcoGene:EG14478" /db_xref="GeneID:7751617" gene complement(1390933..1391853) /gene="ycjY" /locus_tag="b1327" /gene_synonym="ECK1324; JW5804" /db_xref="EcoGene:EG13922" /db_xref="GeneID:945988" CDS complement(1390933..1391853) /gene="ycjY" /locus_tag="b1327" /gene_synonym="ECK1324; JW5804" /codon_start=1 /transl_table=11 /product="S9 homolog non-peptidase family protein" /protein_id="NP_415843.2" /db_xref="GI:221800781" /db_xref="ASAP:ABE-0004453" /db_xref="UniProtKB/Swiss-Prot:P76049" /db_xref="EcoGene:EG13922" /db_xref="GeneID:945988" /translation="MMNNKVSFTNSNNPTISLSAVIYFPPKFDETRQYQAIVLSHPGG GVKEQTAGTYAKKLAEKGFVTIAYDASYQGESGGEPRQLENPYIRTEDISAVIDYLTT LSYVDNTRIGAMGICAGAGYTANAAIQDRRIKAIGTVSAVNIGSIFRNGWENNVKSID ALPYVEAGSNARTSDISSGEYAIMPLAPMKESDAPNEELRQAWEYYHTPRAQYPTAPG YATLRSLNQIITYDAYHMAEVYLTQPTQIVAGSQAGSKWMSDDLYDRASSQDKRYHIV EGANHMDLYDGKAYVAEAISVLAPFFEETL" gene 1391991..1392890 /gene="pgrR" /locus_tag="b1328" /gene_synonym="ECK1325; JW1321; ycjZ" /db_xref="EcoGene:EG13923" /db_xref="GeneID:945930" CDS 1391991..1392890 /gene="pgrR" /locus_tag="b1328" /gene_synonym="ECK1325; JW1321; ycjZ" /function="regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="murein peptide degradation regulator" /protein_id="NP_415844.1" /db_xref="GI:16129289" /db_xref="ASAP:ABE-0004457" /db_xref="UniProtKB/Swiss-Prot:P77333" /db_xref="EcoGene:EG13923" /db_xref="GeneID:945930" /translation="MKREEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEE RLGLRLLTRTTRSVVPTEAGEHLLSVLGPMLHDIDSAMASLSDLQNRPSGTIRITTVE HAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRI GPDIPMAIVGSPDYFSRRSVPTSVSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVR MEGQLLLNTIDLIIDAAIDGHGLAYLPYDQVERAIKEKKLIRVLDKFTPDLPGYHLYY PHRRHAGSAFSLFIDRLKYKGAV" gene 1393227..1394840 /gene="mppA" /locus_tag="b1329" /gene_synonym="ECK1326; JW1322; ynaH" /db_xref="EcoGene:EG13376" /db_xref="GeneID:945951" CDS 1393227..1394840 /gene="mppA" /locus_tag="b1329" /gene_synonym="ECK1326; JW1322; ynaH" /function="transport; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall; GO:0042597 - periplasmic space" /GO_process="GO:0000270 - peptidoglycan metabolic process" /note="periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="murein tripeptide (L-ala-gamma-D-glutamyl-meso-DAP) transporter subunit" /protein_id="NP_415845.2" /db_xref="GI:90111250" /db_xref="ASAP:ABE-0004460" /db_xref="UniProtKB/Swiss-Prot:P77348" /db_xref="EcoGene:EG13376" /db_xref="GeneID:945951" /translation="MKHSVSVTCCALLVSSISLSYAAEVPSGTVLAEKQELVRHIKDE PASLDPAKAVGLPEIQVIRDLFEGLVNQNEKGEIVPGVATQWKSNDNRIWTFTLRDNA KWADGTPVTAQDFVYSWQRLVDPKTLSPFAWFAALAGINNAQAIIDGKATPDQLGVTA VDAHTLKIQLDKPLPWFVNLTANFAFFPVQKANVESGKEWTKPGNLIGNGAYVLKERV VNEKLVVVPNTHYWDNAKTVLQKVTFLPINQESAATKRYLAGDIDITESFPKNMYQKL LKDIPGQVYTPPQLGTYYYAFNTQKGPTADQRVRLALSMTIDRRLMTEKVLGTGEKPA WHFTPDVTAGFTPEPSPFEQMSQEELNAQAKTLLSAAGYGPQKPLKLTLLYNTSENHQ KIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRNTGNFDVIRASWVGDYNEPSTFLTLL TSTHSGNISRFNNPAYDKVLAQASTENTVKARNADYNAAEKILMEQAPIAPIYQYTNG RLIKPWLKGYPINNPEDVAYSRTMYIVKH" gene complement(1394891..1395922) /gene="ynaI" /locus_tag="b1330" /gene_synonym="ECK1327; JW1323" /db_xref="EcoGene:EG13924" /db_xref="GeneID:945898" CDS complement(1394891..1395922) /gene="ynaI" /locus_tag="b1330" /gene_synonym="ECK1327; JW1323" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="mechanosensitive channel protein, very small conductance" /protein_id="NP_415846.1" /db_xref="GI:16129291" /db_xref="ASAP:ABE-0004462" /db_xref="UniProtKB/Swiss-Prot:P0AEB5" /db_xref="EcoGene:EG13924" /db_xref="GeneID:945898" /translation="MIAELFTNNALNLVIIFGSCAALILMSFWFRRGNRKRKGFLFHA VQFLIYTIIISAVGSIINYVIENYKLKFITPGVIDFICTSLIAVILTIKLFLLINQFE KQQIKKGRDITSARIMSRIIKITIIVVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAG KDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIEGTVAEIGWRITKITTFDNRPLYVPN SLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVREMLKNHPAIDQRQTLLV YFNQFADSSLNIMVYCFTKTTVWAEWLAAQQDVYLKIIDIVQSHGADFAFPSQTLYMD NITPPEQGR" mobile_element 1396044..1397238 /mobile_element_type="insertion sequence:IS5F" gene 1396076..1397092 /gene="insH1" /locus_tag="b1331" /gene_synonym="ECK0261" /db_xref="EcoGene:EG40008" /db_xref="GeneID:945896" CDS 1396076..1397092 /gene="insH1" /locus_tag="b1331" /gene_synonym="ECK0261" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS5 transposase and trans-activator" /protein_id="NP_415847.1" /db_xref="GI:16129292" /db_xref="ASAP:ABE-0004467" /db_xref="UniProtKB/Swiss-Prot:P0CE52" /db_xref="EcoGene:EG40008" /db_xref="GeneID:945896" /translation="MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQIL PWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLF ARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIE APSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQL GNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINI EYMKASIRARVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRADQMIRQW ERSH" gene 1397365..1397622 /gene="ynaJ" /locus_tag="b1332" /gene_synonym="ECK1328; JW1326" /db_xref="EcoGene:EG14294" /db_xref="GeneID:945901" CDS 1397365..1397622 /gene="ynaJ" /locus_tag="b1332" /gene_synonym="ECK1328; JW1326" /codon_start=1 /transl_table=11 /product="DUF2534 family putative inner membrane protein" /protein_id="NP_415848.1" /db_xref="GI:16129293" /db_xref="ASAP:ABE-0004470" /db_xref="UniProtKB/Swiss-Prot:P64445" /db_xref="EcoGene:EG14294" /db_xref="GeneID:945901" /translation="MIMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIP LSEWTTSMYVIQSSMIFVYSLVFTVLLAIPLGIYFLGGEEQ" gene complement(1397672..1398622) /gene="uspE" /locus_tag="b1333" /gene_synonym="ECK1329; JW1327; ydaA" /db_xref="EcoGene:EG11246" /db_xref="GeneID:945904" CDS complement(1397672..1398622) /gene="uspE" /locus_tag="b1333" /gene_synonym="ECK1329; JW1327; ydaA" /codon_start=1 /transl_table=11 /product="stress-induced protein" /protein_id="NP_415849.1" /db_xref="GI:16129294" /db_xref="ASAP:ABE-0004472" /db_xref="UniProtKB/Swiss-Prot:P0AAC0" /db_xref="EcoGene:EG11246" /db_xref="GeneID:945904" /translation="MAMYQNMLVVIDPNQDDQPALRRAVYLHQRIGGKIKAFLPIYDF SYEMTTLLSPDERTAMRQGVISQRTAWIHEQAKYYLNAGVPIEIKVVWHNRPFEAIIQ EVISGGHDLVLKMAHQHDRLEAVIFTPTDWHLLRKCPSPVWMVKDQPWPEGGKALVAV NLASEEPYHNALNEKLVKETIELAEQVNHTEVHLVGAYPVTPINIAIELPEFDPSVYN DAIRGQHLLAMKALRQKFGINENMTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGI SAAFLGNTAEQVIDHLRCDLLVIKPDQYQTPVELDDEEDD" gene complement(1398774..1399526) /gene="fnr" /locus_tag="b1334" /gene_synonym="ECK1330; JW1328; nirA; nirR; ossA" /db_xref="EcoGene:EG10325" /db_xref="GeneID:945908" CDS complement(1398774..1399526) /gene="fnr" /locus_tag="b1334" /gene_synonym="ECK1330; JW1328; nirA; nirR; ossA" /function="regulator; Global regulatory functions" /experiment="N-terminus verified by Edman degradation: PMID 2181237" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0009061 - anaerobic respiration; GO:0006350 - transcription" /note="transcriptional regulation of aerobic, anaerobic respiration, osmotic balance" /codon_start=1 /transl_table=11 /product="oxygen-sensing anaerobic growth regulon transcriptional regulator FNR; autorepressor" /protein_id="NP_415850.1" /db_xref="GI:16129295" /db_xref="ASAP:ABE-0004475" /db_xref="UniProtKB/Swiss-Prot:P0A9E5" /db_xref="EcoGene:EG10325" /db_xref="GeneID:945908" /translation="MIPEKRIIRRIQSGGCAIHCQDCSISQLCIPFTLNEHELDQLDN IIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFD AIGSGHHPSFAQALETSMVCEIPFETLDDLSGKMPNLRQQMMRLMSGEIKGDQDMILL LSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRF QKSGMLAVKGKYITIENNDALAQLAGHTRNVA" gene complement(1399721..1400236) /gene="ogt" /locus_tag="b1335" /gene_synonym="ECK1331; JW1329" /db_xref="EcoGene:EG10668" /db_xref="GeneID:945853" CDS complement(1399721..1400236) /gene="ogt" /locus_tag="b1335" /gene_synonym="ECK1331; JW1329" /EC_number="2.1.1.63" /function="enzyme; DNA - replication, repair, restriction/modification" /experiment="N-terminus verified by Edman degradation: PMID 2825131" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006306 - DNA methylation" /note="O-6-alkylguanine-DNA/cysteine-protein methyltransferase" /codon_start=1 /transl_table=11 /product="O-6-alkylguanine-DNA:cysteine-protein methyltransferase" /protein_id="NP_415851.1" /db_xref="GI:16129296" /db_xref="ASAP:ABE-0004486" /db_xref="UniProtKB/Swiss-Prot:P0AFH0" /db_xref="EcoGene:EG10668" /db_xref="GeneID:945853" /translation="MLRLLEEKIATPLGPLWVICDEQFRLRAVEWEEYSERMVQLLDI HYRKEGYERISATNPGGLSDKLREYFAGNLSIIDTLPTATGGTPFQREVWKTLRTIPC GQVMHYGQLAEQLGRPGAARAVGAANGSNPISIVVPCHRVIGRNGTMTGYAGGVQRKE WLLRHEGYLLL" gene complement(1400247..1401773) /gene="abgT" /locus_tag="b1336" /gene_synonym="ECK1332; JW5822; ydaH" /db_xref="EcoGene:EG12853" /db_xref="GeneID:945912" CDS complement(1400247..1401773) /gene="abgT" /locus_tag="b1336" /gene_synonym="ECK1332; JW5822; ydaH" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="p-aminobenzoyl-glutamate transporter; membrane protein" /protein_id="NP_415852.2" /db_xref="GI:90111251" /db_xref="ASAP:ABE-0004488" /db_xref="UniProtKB/Swiss-Prot:P46133" /db_xref="EcoGene:EG12853" /db_xref="GeneID:945912" /translation="MSMSSIPSSSQSGKLYGWVERIGNKVPHPFLLFIYLIIVLMVTT AILSAFGVSAKNPTDGTPVVVKNLLSVEGLHWFLPNVIKNFSGFAPLGAILALVLGAG LAERVGLLPALMVKMASHVNARYASYMVLFIAFFSHISSDAALVIMPPMGALIFLAVG RHPVAGLLAAIAGVGCGFTANLLIVTTDVLLSGISTEAAAAFNPQMHVSVIDNWYFMA SSVVVLTIVGGLITDKIIEPRLGQWQGNSDEKLQTLTESQRFGLRIAGVVSLLFIAAI ALMVIPQNGILRDPINHTVMPSPFIKGIVPLIILFFFVVSLAYGIATRTIRRQADLPH LMIEPMKEMAGFIVMVFPLAQFVAMFNWSNMGKFIAVGLTDILESSGLSGIPAFVGLA LLSSFLCMFIASGSAIWSILAPIFVPMFMLLGFHPAFAQILFRIADSSVLPLAPVSPF VPLFLGFLQRYKPDAKLGTYYSLVLPYPLIFLVVWLLMLLAWYLVGLPIGPGIYPRLS " gene complement(1401810..1403255) /gene="abgB" /locus_tag="b1337" /gene_synonym="ECK1333; JW1331; ydaI" /db_xref="EcoGene:EG13351" /db_xref="GeneID:945950" CDS complement(1401810..1403255) /gene="abgB" /locus_tag="b1337" /gene_synonym="ECK1333; JW1331; ydaI" /function="enzyme; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 20190044" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="p-aminobenzoyl-glutamate hydrolase, B subunit" /protein_id="NP_415853.1" /db_xref="GI:16129298" /db_xref="ASAP:ABE-0004491" /db_xref="UniProtKB/Swiss-Prot:P76052" /db_xref="EcoGene:EG13351" /db_xref="GeneID:945950" /translation="MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLA SALESAGFTVTRNVGNIPNAFIASFGQGKPVIALLGEYDALAGLSQQAGCAQPTSVTP GENGHGCGHNLLGTAAFAAAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGV FDDVDAALTWHPEAFAGMFNTRTLANIQASWRFKGIAAHAANSPHLGRSALDAVTLMT TGTNFLNEHIIEKARVHYAITNSGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAK IAEGAALMTETTVECRFDKACSSYLPNRTLENAMYQALSHFGTPEWNSEELAFAKQIQ ATLTSNDRQNSLNNIAATGGENGKVFALRHRETVLANEVAPYAATDNVLAASTDVGDV SWKLPVAQCFSPCFAVGTPLHTWQLVSQGRTSIAHKGMLLAAKTMAATTVNLFLDSGL LQECQQEHQQVTDTQPYHCPIPKNVTPSPLK" gene complement(1403255..1404565) /gene="abgA" /locus_tag="b1338" /gene_synonym="ECK1334; JW5205; ydaJ" /db_xref="EcoGene:EG13352" /db_xref="GeneID:945742" CDS complement(1403255..1404565) /gene="abgA" /locus_tag="b1338" /gene_synonym="ECK1334; JW5205; ydaJ" /EC_number="3.5.1.14" /function="enzyme; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 20190044" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="p-aminobenzoyl-glutamate hydrolase, A subunit" /protein_id="NP_415854.4" /db_xref="GI:90111252" /db_xref="ASAP:ABE-0004493" /db_xref="UniProtKB/Swiss-Prot:P77357" /db_xref="EcoGene:EG13352" /db_xref="GeneID:945742" /translation="MESLNQFVNSLAPKLSHWRRDFHHYAESGWVEFRTATLVAEELH QLGYSLALGREVVNESSRMGLPDEFTLQREFERARQQGALAQWIAAFEGGFTGIVATL DTGRPGPVMAFRVDMDALDLSEEQDVSHRPYRDGFASCNAGMMHACGHDGHTAIGLGL AHTLKQFESGLHGVIKLIFQPAEEGTRGARAMVDAGVVDDVDYFTAVHIGTGVPAGTV VCGSDNFMATTKFDAHFTGTAAHAGAKPEDGHNALLAAAQATLALHAIAPHSEGASRV NVGVMQAGSGRNVVPASALLKVETRGASDVINQYVFDRAQQAIQGAATMYGVGVETRL MGAATASSPSPQWVAWLQSQAAQVAGVNQAIERVEAPAGSEDATLMMARVQQHQGQAS YVVFGTQLAAGHHNEKFDFDEQVLAIAVETLARTALNFPWTRGI" gene 1404741..1405649 /gene="abgR" /locus_tag="b1339" /gene_synonym="ECK1335; JW1333; ydaK" /db_xref="EcoGene:EG13353" /db_xref="GeneID:945831" CDS 1404741..1405649 /gene="abgR" /locus_tag="b1339" /gene_synonym="ECK1335; JW1333; ydaK" /function="putative regulator; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator of abgABT operon" /protein_id="NP_415855.1" /db_xref="GI:16129300" /db_xref="ASAP:ABE-0004496" /db_xref="UniProtKB/Swiss-Prot:P77744" /db_xref="EcoGene:EG13353" /db_xref="GeneID:945831" /translation="MAFQVKIHQIRAFVEVARQGSIRGASRMLNMSQPALSKSIQELE EGLAAQLFFRRSKGVTLTDAGESFYQHASLILEELRAAQEDIRQRQGQLAGQINIGMG ASISRSLMPAVISRFHQQHPQVKVRIMEGQLVSMINELRQGELDFTINTYYQGPYDHE FTFEKLLEKQFAIFCRPGHPAIGARSIKQLLDYSWTMPTPHGSYYKQLSELLDDQAQT PQVGVVCETFSACISLVAKSDFLSKLPEEMGCDPLHGQGLVMLPVSEILPKAAYYLIQ RRDSRQTPLTASLITQFRRECGYLQS" gene complement(1405656..1405751) /gene="mcaS" /locus_tag="b4426" /gene_synonym="ECK1336; IS061; isrA; JWR0233" /db_xref="EcoGene:EG31143" /db_xref="GeneID:2847751" ncRNA complement(1405656..1405751) /ncRNA_class="antisense_RNA" /gene="mcaS" /locus_tag="b4426" /gene_synonym="ECK1336; IS061; isrA; JWR0233" /product="motility and biofilm regulator sRNA" /note="identified in a large scale screen" /function="represses csgD, activates flhD, regulates pgaA" /db_xref="ASAP:ABE-0047247" /db_xref="EcoGene:EG31143" /db_xref="GeneID:2847751" gene 1405979..1406542 /gene="smrA" /locus_tag="b1340" /gene_synonym="ECK1337; JW1334; ydaL" /db_xref="EcoGene:EG13354" /db_xref="GeneID:945953" CDS 1405979..1406542 /gene="smrA" /locus_tag="b1340" /gene_synonym="ECK1337; JW1334; ydaL" /codon_start=1 /transl_table=11 /product="DNA endonuclease" /protein_id="NP_415856.1" /db_xref="GI:16129301" /db_xref="ASAP:ABE-0004502" /db_xref="UniProtKB/Swiss-Prot:P76053" /db_xref="EcoGene:EG13354" /db_xref="GeneID:945953" /translation="MNLDDKSLFLDAMEDVQPLKRATDVHWHPTRNQRAPQRIDTLQL DNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMV FSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGG SGACYVALRKTAQAKQENWERHAKRSR" gene complement(1406563..1407795) /gene="ydaM" /locus_tag="b1341" /gene_synonym="ECK1338; JW5206" /db_xref="EcoGene:EG13355" /db_xref="GeneID:945909" CDS complement(1406563..1407795) /gene="ydaM" /locus_tag="b1341" /gene_synonym="ECK1338; JW5206" /codon_start=1 /transl_table=11 /product="diguanylate cyclase, csgD regulator" /protein_id="NP_415857.2" /db_xref="GI:90111253" /db_xref="ASAP:ABE-0004504" /db_xref="UniProtKB/Swiss-Prot:P77302" /db_xref="EcoGene:EG13355" /db_xref="GeneID:945909" /translation="MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAAKLLMQDLTFSQ LRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRKEEETALSCRLVLRKLTETEPVI IFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAA LNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQ TYAGPIEIYGDKLMLCIVHDITEQKRLEEQLEHAAHHDAMTGLLNRRQFYHITEPGQM QHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGE EFVLLLPRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHEGNESIDELFKRV DDALYRAKNDGRNRVLAA" gene 1408050..1409033 /gene="ydaN" /locus_tag="b1342" /gene_synonym="ECK1339; JW1336; zntB" /db_xref="EcoGene:EG13356" /db_xref="GeneID:945910" CDS 1408050..1409033 /gene="ydaN" /locus_tag="b1342" /gene_synonym="ECK1339; JW1336; zntB" /codon_start=1 /transl_table=11 /product="putative Zn(II) transporter" /protein_id="NP_415858.1" /db_xref="GI:16129303" /db_xref="ASAP:ABE-0004508" /db_xref="UniProtKB/Swiss-Prot:P64423" /db_xref="EcoGene:EG13356" /db_xref="GeneID:945910" /translation="MEAIKGSDVNVPDAVFAWMLDGRGGVKPLENTDVIDEAHPCWLH LNYVHHDSAQWLATTPLLPNNVRDALAGESTRPRVSRLGEGTLITLRCINGSTDERPD QLVAMRVYMDGRLIVSTRQRKVLALDDVVSDLEEGTGPTDCGGWLVDVCDALTDHSSE FIEQLHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPW MSDDQRRRMQDIADRLGRGLDEIDACIARTGVMADEIAQVMQENLARRTYTMSLMAMV FLPSTFLTGLFGVNLGGIPGGGWQFGFSIFCILLVVLIGGVALWLHRSKWL" gene 1409129..1409250 /gene="fnrS" /locus_tag="b4699" /gene_synonym="ECK4511; rydA" /db_xref="EcoGene:EG31185" /db_xref="GeneID:8764968" ncRNA 1409129..1409250 /ncRNA_class="antisense_RNA" /gene="fnrS" /locus_tag="b4699" /gene_synonym="ECK4511; rydA" /product="FNR-activated anaerobic sRNA antisense regulator down regulates cydDC, metE, sodA, sodB, Hfq-dependent; mediates negative FNR regulation" /db_xref="ASAP:ABE-0285265" /db_xref="EcoGene:EG31185" /db_xref="GeneID:8764968" gene 1409511..1410884 /gene="dbpA" /locus_tag="b1343" /gene_synonym="ECK1340; JW1337; rhlC" /db_xref="EcoGene:EG10210" /db_xref="GeneID:947153" CDS 1409511..1410884 /gene="dbpA" /locus_tag="b1343" /gene_synonym="ECK1340; JW1337; rhlC" /function="enzyme; RNA synthesis, modification, DNA transcription" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /note="ATP-dependent RNA helicase" /codon_start=1 /transl_table=11 /product="ATP-dependent RNA helicase, specific for 23S rRNA" /protein_id="NP_415859.1" /db_xref="GI:16129304" /db_xref="ASAP:ABE-0004511" /db_xref="UniProtKB/Swiss-Prot:P21693" /db_xref="EcoGene:EG10210" /db_xref="GeneID:947153" /translation="MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVR VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTK ILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLD MGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ QFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLE QRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTAR AGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIATLEAEMATLCIDGGKK AKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKT CRVRLLK" repeat_region 1410933..1410969 /note="REP115 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1411013..1411948) /gene="ttcA" /locus_tag="b1344" /gene_synonym="ECK1341; JW1338; stcA; ydaO" /db_xref="EcoGene:EG13357" /db_xref="GeneID:948967" CDS complement(1411013..1411948) /gene="ttcA" /locus_tag="b1344" /gene_synonym="ECK1341; JW1338; stcA; ydaO" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="tRNA s(2)C32 thioltransferase, iron sulfur cluster protein" /protein_id="NP_415860.1" /db_xref="GI:16129305" /db_xref="ASAP:ABE-0004514" /db_xref="UniProtKB/Swiss-Prot:P76055" /db_xref="EcoGene:EG13357" /db_xref="GeneID:948967" /translation="MQENQQITKKEQYNLNKLQKRLRRNVGEAIADFNMIEEGDRIMV CLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGVEYKI VEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFL NMFYGGKMKGMPPKLMSDDGKHIVIRPLAYCREKDIQRFADAKAFPIIPCNLCGSQPN LQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGITHGSEVVNGGD LAFDREEIPLQPACWQPEEDENQLDELRLNVVEVK" misc_feature 1411899..1434958 /note="cryptic prophage Rac" gene complement(1412000..1413235) /gene="intR" /locus_tag="b1345" /gene_synonym="ECK1342; JW1339; ydaP" /db_xref="EcoGene:EG13358" /db_xref="GeneID:946976" CDS complement(1412000..1413235) /gene="intR" /locus_tag="b1345" /gene_synonym="ECK1342; JW1339; ydaP" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Rac prophage; integrase" /protein_id="NP_415861.1" /db_xref="GI:16129306" /db_xref="ASAP:ABE-0004517" /db_xref="UniProtKB/Swiss-Prot:P76056" /db_xref="EcoGene:EG13358" /db_xref="GeneID:946976" /translation="MSKLPTGVEIRGRYIRIWFMFRGKRCRETLKGWEITNSNIKKAG NLRALIVHEINSGEFEYLRRFPQSSTGAKMVTTRVIKTFGELCDIWTKIKETELTTNT MKKTKSQLKTLRIIICESTPISHIRYSDILNYRNELLHGETLYLDNPRSNKKGRTVRT VDNYIALLCSLLRFAYQSGFISTKPFEGVKKLQRNRIKPDPLSKTEFNALMESEKGQS QNLWKFAVYSGLRHGELAALAWEDVDLEKGIVNVRRNLTILDMFGPPKTNAGIRTVTL LQPALEALKEQYKLTGHHRKSEITFYHREYGRTEKQKLHFVFMPRVCNGKQKPYYSVS SLGARWNAAVKRAGIRRRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYEIYG MWIDDMNDEQIAMLNARLS" gene complement(1413237..1413452) /gene="ydaQ" /locus_tag="b1346" /gene_synonym="ECK1343; JW5207" /db_xref="EcoGene:EG13359" /db_xref="GeneID:947399" CDS complement(1413237..1413452) /gene="ydaQ" /locus_tag="b1346" /gene_synonym="ECK1343; JW5207" /function="Phage or Prophage Related" /note="putative lambdoid prophage Rac excisionase" /codon_start=1 /transl_table=11 /product="Rac prophage; conserved protein" /protein_id="NP_415862.4" /db_xref="GI:90111254" /db_xref="ASAP:ABE-0004519" /db_xref="UniProtKB/Swiss-Prot:P76057" /db_xref="EcoGene:EG13359" /db_xref="GeneID:947399" /translation="MAQVIFNEEWMVEYGLMLRTGLGARQIEAYRQNCWVEGFHFKRV SPLGKPDSKRGIIWYNYPKINQFIKDS" gene complement(1413531..1413740) /gene="ydaC" /locus_tag="b1347" /gene_synonym="ECK1344; JW1341; rcbA" /db_xref="EcoGene:EG11901" /db_xref="GeneID:947504" CDS complement(1413531..1413740) /gene="ydaC" /locus_tag="b1347" /gene_synonym="ECK1344; JW1341; rcbA" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="DUF1187 family protein, Rac prophage; putative double-strand break reduction protein" /protein_id="NP_415863.1" /db_xref="GI:16129308" /db_xref="ASAP:ABE-0004522" /db_xref="UniProtKB/Swiss-Prot:P33230" /db_xref="EcoGene:EG11901" /db_xref="GeneID:947504" /translation="MYKITATIEKEGGTPTNWTRYSKSKLTKSECEKMLSGKKEAGVS REQKVKLINFNCEKLQSSRIALYSN" gene 1413556..1413734 /gene="ralA" /locus_tag="b4714" /gene_synonym="ECK4571; rcbA" /note="Antisense sRNA antitoxin for the RalR toxin" /db_xref="EcoGene:EG31192" /db_xref="GeneID:20160642" gene complement(1413733..1413927) /gene="ralR" /locus_tag="b1348" /gene_synonym="ECK1345; JW5208; lar; ral; ydaB" /db_xref="EcoGene:EG11900" /db_xref="GeneID:945914" CDS complement(1413733..1413927) /gene="ralR" /locus_tag="b1348" /gene_synonym="ECK1345; JW5208; lar; ral; ydaB" /function="enzyme; Phage or Prophage Related" /note="restriction alleviation and modification enhancement" /codon_start=1 /transl_table=11 /product="Rac prophage; restriction alleviation protein" /protein_id="NP_415864.1" /db_xref="GI:16129309" /db_xref="ASAP:ABE-0004524" /db_xref="UniProtKB/Swiss-Prot:P33229" /db_xref="EcoGene:EG11900" /db_xref="GeneID:945914" /translation="MRYDNVKPCPFCGCPSVTVKAISGYYRAKCNGCESRTGYGGSEK EALERWNKRTTGNNNGGVHV" gene complement(1413984..1414793) /gene="recT" /locus_tag="b1349" /gene_synonym="ECK1346; JW1343" /db_xref="EcoGene:EG11899" /db_xref="GeneID:945917" CDS complement(1413984..1414793) /gene="recT" /locus_tag="b1349" /gene_synonym="ECK1346; JW1343" /function="enzyme; DNA - replication, repair, restriction/modification: Phage or Prophage Related" /experiment="N-terminus verified by Edman degradation: PMID 8416902" /note="recombinase, DNA renaturation" /codon_start=1 /transl_table=11 /product="Rac prophage; recombination and repair protein" /protein_id="NP_415865.1" /db_xref="GI:16129310" /db_xref="ASAP:ABE-0004529" /db_xref="UniProtKB/Swiss-Prot:P33228" /db_xref="EcoGene:EG11899" /db_xref="GeneID:945917" /translation="MTKQPPIAKADLQKTQGNRAPAAVKNSDVISFINQPSMKEQLAA ALPRHMTAERMIRIATTEIRKVPALGNCDTMSFVSAIVQCSQLGLEPGSALGHAYLLP FGNKNEKSGKKNVQLIIGYRGMIDLARRSGQIASLSARVVREGDEFSFEFGLDEKLIH RPGENEDAPVTHVYAVARLKDGGTQFEVMTRKQIELVRSLSKAGNNGPWVTHWEEMAK KTAIRRLFKYLPVSIEIQRAVSMDEKEPLTIDPADSSVLTGEYSVIDNSEE" gene complement(1414786..1417386) /gene="recE" /locus_tag="b1350" /gene_synonym="ECK1347; JW1344; rmuB; sbcA" /db_xref="EcoGene:EG10827" /db_xref="GeneID:945918" CDS complement(1414786..1417386) /gene="recE" /locus_tag="b1350" /gene_synonym="ECK1347; JW1344; rmuB; sbcA" /EC_number="3.1.11.-" /function="enzyme; Degradation of DNA; Phage or Prophage Related" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006308 - DNA catabolic process; GO:0006281 - DNA repair" /note="exonuclease VIII, ds DNA exonuclease, 5' --> 3' specific" /codon_start=1 /transl_table=11 /product="Rac prophage; exonuclease VIII, 5' to 3' specific dsDNA exonuclease" /protein_id="NP_415866.1" /db_xref="GI:16129311" /db_xref="ASAP:ABE-0004531" /db_xref="UniProtKB/Swiss-Prot:P15032" /db_xref="EcoGene:EG10827" /db_xref="GeneID:945918" /translation="MSTKPLFLLRKAKKSSGEPDVVLWASNDFESTCATLDYLIVKSG KKLSSYFKAVATNFPVVNDLPAEGEIDFTWSERYQLSKDSMTWELKPGAAPDNAHYQG NTNVNGEDMTEIEENMLLPISGQELPIRWLAQHGSEKPVTHVSRDGLQALHIARAEEL PAVTALAVSHKTSLLDPLEIRELHKLVRDTDKVFPNPGNSNLGLITAFFEAYLNADYT DRGLLTKEWMKGNRVSHITRTASGANAGGGNLTDRGEGFVHDLTSLARDVATGVLARS MDLDIYNLHPAHAKRIEEIIAENKPPFSVFRDKFITMPGGLDYSRAIVVASVKEAPIG IEVIPAHVTEYLNKVLTETDHANPDPEIVDIACGRSSAPMPQRVTEEGKQDDEEKPQP SGTTAVEQGEAETMEPDATEHHQDTQPLDAQSQVNSVDAKYQELRAELHEARKNIPSK NPVDDDKLLAASRGEFVDGISDPNDPKWVKGIQTRDCVYQNQPETEKTSPDMNQPEPV VQQEPEIACNACGQTGGDNCPDCGAVMGDATYQETFDEESQVEAKENDPEEMEGAEHP HNENAGSDPHRDCSDETGEVADPVIVEDIEPGIYYGISNENYHAGPGISKSQLDDIAD TPALYLWRKNAPVDTTKTKTLDLGTAFHCRVLEPEEFSNRFIVAPEFNRRTNAGKEEE KAFLMECASTGKTVITAEEGRKIELMYQSVMALPLGQWLVESAGHAESSIYWEDPETG ILCRCRPDKIIPEFHWIMDVKTTADIQRFKTAYYDYRYHVQDAFYSDGYEAQFGVQPT FVFLVASTTIECGRYPVEIFMMGEEAKLAGQQEYHRNLRTLSDCLNTDEWPAIKTLSL PRWAKEYAND" gene complement(1417488..1417763) /gene="racC" /locus_tag="b1351" /gene_synonym="ECK1348; JW1345; sbcA" /db_xref="EcoGene:EG10813" /db_xref="GeneID:945920" CDS complement(1417488..1417763) /gene="racC" /locus_tag="b1351" /gene_synonym="ECK1348; JW1345; sbcA" /function="membrane; Phage or Prophage Related" /experiment="N-terminus verified by Edman degradation: PMID 3056915" /note="RacC protein" /codon_start=1 /transl_table=11 /product="Rac prophage; uncharacterized protein" /protein_id="NP_415867.1" /db_xref="GI:16129312" /db_xref="ASAP:ABE-0004533" /db_xref="UniProtKB/Swiss-Prot:P15033" /db_xref="EcoGene:EG10813" /db_xref="GeneID:945920" /translation="MITNYEATVVTTDDIVHEVNLEGKRIGYVIKTENKETPFTVVDI DGPSGNVKTLDEGVKKMCLVHIGKNLPAEKKAEFLATLIAMKLKGEI" gene complement(1417838..1418008) /gene="ydaE" /locus_tag="b4526" /gene_synonym="ECK1349; JW1346" /db_xref="EcoGene:EG12156" /db_xref="GeneID:948959" CDS complement(1417838..1418008) /gene="ydaE" /locus_tag="b4526" /gene_synonym="ECK1349; JW1346" /function="Phage or Prophage Related" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="conserved protein, Rac prophage" /protein_id="YP_588451.1" /db_xref="GI:94541109" /db_xref="ASAP:ABE-0285047" /db_xref="UniProtKB/Swiss-Prot:P38394" /db_xref="EcoGene:EG12156" /db_xref="GeneID:948959" /translation="MTKKIKCAYHLCKKDVEESKAIERMLHFMHGILSKDEPRKYCSE ACAEKDQMAHEL" gene complement(1418008..1418229) /gene="kilR" /locus_tag="b1352" /gene_synonym="ECK1350; JW1347; kil; ydaD" /db_xref="EcoGene:EG12155" /db_xref="GeneID:945921" CDS complement(1418008..1418229) /gene="kilR" /locus_tag="b1352" /gene_synonym="ECK1350; JW1347; kil; ydaD" /function="Phage or Prophage Related" /note="Kil protein (killing function) of lambdoid prophage Rac" /codon_start=1 /transl_table=11 /product="killing protein, Rac prophage; FtsZ inhibitor protein" /protein_id="NP_415869.2" /db_xref="GI:90111255" /db_xref="ASAP:ABE-0004537" /db_xref="UniProtKB/Swiss-Prot:P38393" /db_xref="EcoGene:EG12155" /db_xref="GeneID:945921" /translation="MIAHHFGTDEIPRQCVTPGDYVLHEGRTYIASANNIKKRKLYIR NLTTKTFITDRMIKVFLGRDGLPVKAESW" gene 1418671..1419159 /gene="sieB" /locus_tag="b1353" /gene_synonym="ECK1351; git; JW5209" /db_xref="EcoGene:EG12154" /db_xref="GeneID:945913" CDS 1418671..1419159 /gene="sieB" /locus_tag="b1353" /gene_synonym="ECK1351; git; JW5209" /function="phenotype; Phage or Prophage Related" /note="phage superinfection exclusion protein" /codon_start=1 /transl_table=11 /product="phage superinfection exclusion protein, Rac prophage" /protein_id="NP_415870.4" /db_xref="GI:90111256" /db_xref="ASAP:ABE-0004540" /db_xref="UniProtKB/Swiss-Prot:P38392" /db_xref="EcoGene:EG12154" /db_xref="GeneID:945913" /translation="MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNA YTEIPWLFQIIVFAFSFVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFL KTGNLIITSPCRNPVMKKLERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRF NR" gene complement(1419156..1419311) /gene="ydaF" /locus_tag="b4527" /gene_synonym="ECK1352; JW1349" /db_xref="EcoGene:EG12157" /db_xref="GeneID:945911" CDS complement(1419156..1419311) /gene="ydaF" /locus_tag="b4527" /gene_synonym="ECK1352; JW1349" /function="Phage or Prophage Related" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="uncharacterized protein, Rac prophage" /protein_id="NP_415872.2" /db_xref="GI:94541091" /db_xref="ASAP:ABE-0285048" /db_xref="UniProtKB/Swiss-Prot:P0ACW0" /db_xref="EcoGene:EG12157" /db_xref="GeneID:945911" /translation="MQKIDLGNNESLVCGVFPNQDGTFTAMTYTKSKTFKTETGARRW LEKHTVS" gene complement(1419322..1419456) /gene="ydaG" /locus_tag="b1355" /gene_synonym="ECK1353; gatA; JW5210" /db_xref="EcoGene:EG12174" /db_xref="GeneID:945907" CDS complement(1419322..1419456) /gene="ydaG" /locus_tag="b1355" /gene_synonym="ECK1353; gatA; JW5210" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Rac prophage; uncharacterized protein" /protein_id="NP_415873.2" /db_xref="GI:90111257" /db_xref="ASAP:ABE-0004544" /db_xref="UniProtKB/Swiss-Prot:P76061" /db_xref="EcoGene:EG12174" /db_xref="GeneID:945907" /translation="MVHYEVVQYLMDCCGITYNQAVQALRSNDWDLWQAEVAIRSNKM " gene complement(1419765..1420241) /gene="racR" /locus_tag="b1356" /gene_synonym="cohR; ECK1354; JW1351; ydaR" /db_xref="EcoGene:EG13360" /db_xref="GeneID:945899" CDS complement(1419765..1420241) /gene="racR" /locus_tag="b1356" /gene_synonym="cohR; ECK1354; JW1351; ydaR" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Rac prophage; putative DNA-binding transcriptional regulator" /protein_id="NP_415874.1" /db_xref="GI:16129317" /db_xref="ASAP:ABE-0004548" /db_xref="UniProtKB/Swiss-Prot:P76062" /db_xref="EcoGene:EG13360" /db_xref="GeneID:945899" /translation="MLSGKDLGRAIEQAINKKIASGSVKSKAEVARHFKVQPPSIYDW IKKGSISKDKLPELWRFFSDVVGPEHWGLNEYPIPTPTNSDTKSELLDINNLYQAASD EIRAIVAFLLSGNATEPDWVDHDVRAYIAAMEMKVGKYLKALESERKSQNITKTGT" gene 1420365..1420661 /gene="ydaS" /locus_tag="b1357" /gene_synonym="ECK1355; JW1352" /db_xref="EcoGene:EG13361" /db_xref="GeneID:945923" CDS 1420365..1420661 /gene="ydaS" /locus_tag="b1357" /gene_synonym="ECK1355; JW1352" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Rac prophage; putative DNA-binding transcriptional regulator" /protein_id="NP_415875.1" /db_xref="GI:16129318" /db_xref="ASAP:ABE-0004552" /db_xref="UniProtKB/Swiss-Prot:P76063" /db_xref="EcoGene:EG13361" /db_xref="GeneID:945923" /translation="MKKENYSFKQACAVVGGQSAMARLLGVSPPSVNQWIKGVRQLPA ERCPAIERATRGEVLCEELRPDIDWSYLRRSACCSQNMSVKQLNDSNKSSFDHT" gene 1420684..1421106 /gene="ydaT" /locus_tag="b1358" /gene_synonym="ECK1356; JW1353" /db_xref="EcoGene:EG13362" /db_xref="GeneID:945924" CDS 1420684..1421106 /gene="ydaT" /locus_tag="b1358" /gene_synonym="ECK1356; JW1353" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Rac prophage; uncharacterized protein" /protein_id="NP_415876.1" /db_xref="GI:16129319" /db_xref="ASAP:ABE-0004556" /db_xref="UniProtKB/Swiss-Prot:P76064" /db_xref="EcoGene:EG13362" /db_xref="GeneID:945924" /translation="MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVP GKDWNNQQNIYHRWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLA AQEALSTAIDAHDDAVQAVYRKAHFSGGGSSDDSVIVH" gene 1421119..1421976 /gene="ydaU" /locus_tag="b1359" /gene_synonym="ECK1357; JW1354" /db_xref="EcoGene:EG13363" /db_xref="GeneID:945925" CDS 1421119..1421976 /gene="ydaU" /locus_tag="b1359" /gene_synonym="ECK1357; JW1354" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Rac prophage; conserved protein" /protein_id="NP_415877.1" /db_xref="GI:16129320" /db_xref="ASAP:ABE-0004558" /db_xref="UniProtKB/Swiss-Prot:P76065" /db_xref="EcoGene:EG13363" /db_xref="GeneID:945925" /translation="MLFVLILSHRAASYGAIMAALPYMQLYIADYLADTMHLSAEEHG AYLLLMFNYWQTGKPIPKNRLAKIARLTNERWADVEPSLQEFFCDNGEEWVHLRIEED LASVREKLTKKSAAGKASVQARRSRKEADVQTKQERNLTGVQTDVEVVFEHDVNTKAT NKDTDKDLKTDPPLNPPRGNRGVKKFDPLDITLPNWISVSLWREWVEFRQALRKPIRT EQGANGAIRELEKFRQQGFSPEQVIRHSIANEYQGLFAPKGVRPETLLRQVNTVSLPD SAIPPGFRG" gene 1421983..1422729 /gene="ydaV" /locus_tag="b1360" /gene_synonym="ECK1358; JW1355" /db_xref="EcoGene:EG13364" /db_xref="GeneID:945926" CDS 1421983..1422729 /gene="ydaV" /locus_tag="b1360" /gene_synonym="ECK1358; JW1355" /function="Phage or Prophage Related" /note="putative DNA replication factor" /codon_start=1 /transl_table=11 /product="Rac prophage; putative DNA replication protein" /protein_id="NP_415878.1" /db_xref="GI:16129321" /db_xref="ASAP:ABE-0004560" /db_xref="UniProtKB/Swiss-Prot:P77546" /db_xref="EcoGene:EG13364" /db_xref="GeneID:945926" /translation="MKNIATGDVLERIRRLAPSHVTAPFKTVAEWREWQLSEGQKRCE EINRQNRQLRVEKILNRSGIQPLHRKCSFSNYQVQNEGQRYALSQAKSIADELMTGCT NFAFSGKPGTGKNHLAAAIGNRLLKDGQTVIVVTVADVMSALHASYDDGQSGEKFLRE LCEVDLLVLDEIGIQRETKNEQVVLHQIVDRRTASMRSVGMLTNLNYEAMKTLLGERI MDRMTMNGGRWVNFNWESWRPNVVQPGIAK" gene 1422701..1423200 /gene="ydaW" /locus_tag="b1361" /gene_synonym="ECK1359; JW5211" /pseudo /db_xref="EcoGene:EG13365" /db_xref="GeneID:945927" CDS 1422701..1423200 /gene="ydaW" /locus_tag="b1361" /gene_synonym="ECK1359; JW5211" /note="Rac prophage; pseudogene, DNA-binding protein family;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0004562" /db_xref="UniProtKB/Swiss-Prot:P76066" /db_xref="EcoGene:EG13365" /db_xref="GeneID:945927" gene 1423201..1423644 /gene="rzpR" /locus_tag="b1362" /gene_synonym="ECK1360; JW5212; Rz; ydaX" /pseudo /db_xref="EcoGene:EG13366" /db_xref="GeneID:945928" CDS 1423201..1423644 /gene="rzpR" /locus_tag="b1362" /gene_synonym="ECK1360; JW5212; Rz; ydaX" /note="pseudogene, Rac prophage; Bacteriophage Rz lysis protein family;Phage or Prophage Related; putative Rac prophage endopeptidase; completely contained in another CDS" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0004564" /db_xref="UniProtKB/Swiss-Prot:P77551" /db_xref="EcoGene:EG13366" /db_xref="GeneID:945928" gene 1423400..1423585 /gene="rzoR" /locus_tag="b4528" /gene_synonym="ECK1361; JW5213; Rz1" /db_xref="EcoGene:EG14381" /db_xref="GeneID:1450262" CDS 1423400..1423585 /gene="rzoR" /locus_tag="b4528" /gene_synonym="ECK1361; JW5213; Rz1" /function="Phage or Prophage Related" /GO_component="GO:0009279 - cell outer membrane" /note="completely contained in another CDS" /codon_start=1 /transl_table=11 /product="Rac prophage; putative lipoprotein" /protein_id="YP_588452.1" /db_xref="GI:94541110" /db_xref="ASAP:ABE-0285049" /db_xref="UniProtKB/Swiss-Prot:P58042" /db_xref="EcoGene:EG14381" /db_xref="GeneID:1450262" /translation="MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPPPPAWIMQPPP DWQTPLNGIISPSGNDW" gene 1423782..1425239 /gene="trkG" /locus_tag="b1363" /gene_synonym="ECK1362; JW1358" /db_xref="EcoGene:EG11020" /db_xref="GeneID:945932" CDS 1423782..1425239 /gene="trkG" /locus_tag="b1363" /gene_synonym="ECK1362; JW1358" /function="transport; Transport of small molecules: Cations; Phage or Prophage Related" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="Rac prophage; potassium transporter subunit" /protein_id="NP_415881.1" /db_xref="GI:16129324" /db_xref="ASAP:ABE-0004567" /db_xref="UniProtKB/Swiss-Prot:P23849" /db_xref="EcoGene:EG11020" /db_xref="GeneID:945932" /translation="MNTSHVRVVTHMCGFLVWLYSLSMLPPMVVALFYKEKSLFVFFI TFVIFFCIGGGAWYTTKKSGIQLRTRDGFIIIVMFWILFSVISAFPLWIDSELNLTFI DALFEGVSGITTTGATVIDDVSSLPRAYLYYRSQLNFIGGLGVIVLAVAVLPLLGIGG AKLYQSEMPGPFKDDKLTPRLADTSRTLWITYSLLGIACIVCYRLAGMPLFDAICHGI STVSLGGFSTHSESIGYFNNYLVELVAGSFSLLSAFNFTLWYIVISRKTIKPLIRDIE LRFFLLIALGVIIVTSFQVWHIGMYDLHGSFIHSFFLASSMLTDNGLATQDYASWPTH TIVFLLLSSFFGGCIGSTCGGIKSLRFLILFKQSKHEINQLSHPRALLSVNVGGKIVT DRVMRSVWSFFFLYTLFTVFFILVLNGMGYDFLTSFATVAACINNMGLGFGATASSFG VLNDIAKCLMCIAMILGRLEIYPVIILFSGFFWRS" gene 1425377..1425640 /gene="ynaK" /locus_tag="b1365" /gene_synonym="ECK1363; JW1359" /db_xref="EcoGene:EG14296" /db_xref="GeneID:947417" CDS 1425377..1425640 /gene="ynaK" /locus_tag="b1365" /gene_synonym="ECK1363; JW1359" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Rac prophage; conserved protein" /protein_id="NP_415883.1" /db_xref="GI:16129326" /db_xref="ASAP:ABE-0004571" /db_xref="UniProtKB/Swiss-Prot:P76068" /db_xref="EcoGene:EG14296" /db_xref="GeneID:947417" /translation="MSEKLKIVYRPLQELSPYAHNARTHSTEQVAQLVESIKQFGWTN PVLIDEKGEIIAGHGRVMAAEMLKMDSVPVIVLSGLTDEQKQR" gene 1425630..1426082 /gene="ydaY" /locus_tag="b1366" /gene_synonym="ECK1364; JW1360" /pseudo /db_xref="EcoGene:EG13367" /db_xref="GeneID:946208" CDS 1425630..1426082 /gene="ydaY" /locus_tag="b1366" /gene_synonym="ECK1364; JW1360" /note="pseudogene, Rac prophage;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0004574" /db_xref="UniProtKB/Swiss-Prot:P76069" /db_xref="EcoGene:EG13367" /db_xref="GeneID:946208" gene 1426454..1427386 /gene="tmpR" /locus_tag="b1368" /gene_synonym="ECK1365; JW1361; ynaA" /pseudo /db_xref="EcoGene:EG13369" /db_xref="GeneID:947543" CDS 1426454..1427386 /gene="tmpR" /locus_tag="b1368" /gene_synonym="ECK1365; JW1361; ynaA" /note="Rac prophage; pseudogene, tail protein family;Phage or Prophage Related; putative alpha helix protein" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0004581" /db_xref="UniProtKB/Swiss-Prot:P77658" /db_xref="EcoGene:EG13369" /db_xref="GeneID:947543" gene join(1427389..1427598,1428796..1428984) /gene="lomR" /locus_tag="b4570" /gene_synonym="ECK1366; JW5884; JW5904" /pseudo /db_xref="EcoGene:EG14315" /db_xref="GeneID:4056036" CDS join(1427389..1427598,1428796..1428984) /gene="lomR" /locus_tag="b4570" /gene_synonym="ECK1366; JW5884; JW5904" /note="pseudogene, Rac prophage lom homolog;Phage or Prophage Related; interrupted by IS5 and N-ter deletion" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0004583" /db_xref="ASAP:ABE-0004590" /db_xref="ASAP:ABE-0285103" /db_xref="UniProtKB/Swiss-Prot:P77184" /db_xref="EcoGene:EG14315" /db_xref="GeneID:4056036" mobile_element complement(1427599..1428794) /mobile_element_type="insertion sequence:IS5Y" gene complement(1427746..1428726) /gene="insH1" /locus_tag="b1370" /gene_synonym="ECK0261" /db_xref="EcoGene:EG40008" /db_xref="GeneID:945944" CDS complement(1427746..1428726) /gene="insH1" /locus_tag="b1370" /gene_synonym="ECK0261" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS5 transposase and trans-activator" /protein_id="NP_415888.1" /db_xref="GI:16129331" /db_xref="ASAP:ABE-0004586" /db_xref="UniProtKB/Swiss-Prot:P0CE53" /db_xref="EcoGene:EG40008" /db_xref="GeneID:945944" /translation="MSHQLTFADSEFSTKRRQTRKEIFLSRMEQILPWQNMTAVIEPF YPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLFARLSLDSALPDR TTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIEAPSSTKNKEQQR DPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQLGNLLHGEEQFVS ADAGYQGAPQREELAEVDVDWLIAERPGKVKTLKQNPRKNKTAINIEYMKASIRARVE HPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRVDQMIRQWERSQ" gene 1429049..1432411 /gene="stfR" /locus_tag="b1372" /gene_synonym="ECK1367; JW1366; ynaB" /db_xref="EcoGene:EG13370" /db_xref="GeneID:945207" CDS 1429049..1432411 /gene="stfR" /locus_tag="b1372" /gene_synonym="ECK1367; JW1366; ynaB" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Rac prophage; putative tail fiber protein" /protein_id="NP_415890.2" /db_xref="GI:90111261" /db_xref="ASAP:ABE-0004595" /db_xref="UniProtKB/Swiss-Prot:P76072" /db_xref="EcoGene:EG13370" /db_xref="GeneID:945207" /translation="MAVKISGVLKDGTGKPVQNCTIQLKAKRNSTTVVVNTLASENPD EAGRYSMDVEYGQYSVILLVEGFPPSHAGTITVYEDSQPGTLNDFLGAMTEDDARPEA LRRFELMVEEVARNASAVAQNTAAAKKSASDASTSAREAATHAADAADSARAASTSAG QAASSAQSASSSAGTASTKATEASKSAAAAESSKSAAATSAGAAKTSETNASASLQSA ATSASTATTKASEAATSARDAAASKEAAKSSETNASSSASSAASSATAAGNSAKAAKT SETNARSSETAAGQSASAAAGSKTAAASSASAASTSAGQASASATAAGKSAESAASSA STATTKAGEATEQASAAARSASAAKTSETNAKASETSAESSKTAAASSASSAASSASS ASASKDEATRQASAAKSSATTASTKATEAAGSATAAAQSKSTAESAATRAETAAKRAE DIASAVALEDASTTKKGIVQLSSATNSTSETLAATPKAVKSAYDNAEKRLQKDQNGAD IPDKGCFLNNINAVSKTDFADKRGMRYVRVNAPAGATSGKYYPVVVMRSAGSVSELAS RVIITTATRTAGDPMNNCEFNGFVMPGGWTDRGRYAYGMFWQYQNNERAIHSIMMSNK GDDLRSVFYVDGAAFPVFAFIEDGLSISAPGADLVVNDTTYKFGATNPATECIAADVI LDFKSGRGFYESHSLIVNDNLSCKKLFATDEIVARGGNQIRMIGGEYGALWRNDGAKT YLLLTNQGDVYGGWNTLRPFAIDNATGELVIGTKLSASLNGNALTATKLQTPRRVSGV EFDGSKDITLTAAHVAAFARRATDTYADADGGVPWNAESGAYNVTRSGDSYILVNFYT GVGSCRTLQMKAHYRNGGLFYRSSRDGYGFEEDWAEVYTSKNLPPESYPVGAPIPWPS DTVPSGYALMQGQAFDKSAYPKLAAAYPSGVIPDMRGWTIKGKPASGRAVLSQEQDGI KSHTHSASASSTDLGTKTTSSFDYGTKSTNNTGAHTHSVSGSTNSAGAHTHSLANVNT ASANSGAGSASTRLSVVHNQNYATSSAGAHTHSLSGTAASAGAHAHTVGIGAHTHSVA IGSHGHTITVNAAGNAENTVKNIAFNYIVRLA" gene 1432411..1432986 /gene="tfaR" /locus_tag="b1373" /gene_synonym="ECK1368; JW1367; ynaC" /db_xref="EcoGene:EG13371" /db_xref="GeneID:946062" CDS 1432411..1432986 /gene="tfaR" /locus_tag="b1373" /gene_synonym="ECK1368; JW1367; ynaC" /function="Phage or Prophage Related" /note="tail fiber assembly protein homolog from lambdoid prophage Rac" /codon_start=1 /transl_table=11 /product="Rac prophage; putative tail fiber assembly protein" /protein_id="NP_415891.1" /db_xref="GI:16129334" /db_xref="ASAP:ABE-0004597" /db_xref="UniProtKB/Swiss-Prot:P77163" /db_xref="EcoGene:EG13371" /db_xref="GeneID:946062" /translation="MAFRMSEQPRTIKIYNLLAGTNEFIGEGDAYIPPHTGLPANSTD IAPPDIPAGFVAVFNSDESSWHLVEDHRGKTVYDVASGNALFISELGPLPENVTWLSP EGEFQKWNGTAWVKDTEAEKLFRIREAEETKNNLMQVASEHIAPLQDAADLEIATEEE ISLLEAWKKYRVLLNRVDTSTAQDIEWPALP" gene complement(1433084..1433674) /gene="pinR" /locus_tag="b1374" /gene_synonym="ECK1369; JW1368; ynaD" /db_xref="EcoGene:EG13372" /db_xref="GeneID:948973" CDS complement(1433084..1433674) /gene="pinR" /locus_tag="b1374" /gene_synonym="ECK1369; JW1368; ynaD" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Rac prophage; putative site-specific recombinase" /protein_id="NP_415892.1" /db_xref="GI:16129335" /db_xref="ASAP:ABE-0004599" /db_xref="UniProtKB/Swiss-Prot:P0ADI0" /db_xref="EcoGene:EG13372" /db_xref="GeneID:948973" /translation="MSRIFAYCRISTLDQTTENQRREIESAGFKIKPQQIIEEHISGS AATSERPGFNRLLARLKCGDQLIVTKLDRLGCNAMDIRKTVEQLTETGIRVHCLALGG IDLTSPTGKMMMQVISAVAEFERDLLLERTHSGIVRARGAGKRFGRPPVLNEEQKQVV FERIKSGVSISAIAREFKTSRQTILRAKAKLQTPDI" gene complement(1433991..1434224) /gene="ynaE" /locus_tag="b1375" /gene_synonym="ECK1370; JW1369" /db_xref="EcoGene:EG13373" /db_xref="GeneID:946078" CDS complement(1433991..1434224) /gene="ynaE" /locus_tag="b1375" /gene_synonym="ECK1370; JW1369" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="cold shock protein, Rac prophage" /protein_id="NP_415893.2" /db_xref="GI:345452718" /db_xref="ASAP:ABE-0004602" /db_xref="UniProtKB/Swiss-Prot:P76073" /db_xref="EcoGene:EG13373" /db_xref="GeneID:946078" /translation="MKSKDTLKWFPAQLPEVRIILGDAVVEVAKQGRPINTRTLLDYI EGNIKKTSWLDNKELLQTAISVLKDNQNLNGKM" gene complement(1434958..1435008) /gene="ttcC" /locus_tag="b4638" /gene_synonym="ECK4447" /pseudo /db_xref="EcoGene:EG14435" /db_xref="GeneID:5625564" CDS complement(1434958..1435008) /gene="ttcC" /locus_tag="b4638" /gene_synonym="ECK4447" /note="pseudogene, prophage Rac integration site ttcA duplication;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="EcoGene:EG14435" /db_xref="GeneID:5625564" gene complement(1435185..1435619) /gene="uspF" /locus_tag="b1376" /gene_synonym="ECK1371; JW1370; ynaF; yzzL" /db_xref="EcoGene:EG12674" /db_xref="GeneID:945948" CDS complement(1435185..1435619) /gene="uspF" /locus_tag="b1376" /gene_synonym="ECK1371; JW1370; ynaF; yzzL" /function="putative structure; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 8740179,9298646" /note="putative filament protein" /codon_start=1 /transl_table=11 /product="stress-induced protein, ATP-binding protein" /protein_id="NP_415894.4" /db_xref="GI:90111262" /db_xref="ASAP:ABE-0004605" /db_xref="UniProtKB/Swiss-Prot:P37903" /db_xref="EcoGene:EG12674" /db_xref="GeneID:945948" /translation="MNRTILVPIDISDSELTQRVISHVEEEAKIDDAEVHFLTVIPSL PYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKLPTDRVHVHVEEGSPKDRILEL AKKIPAHMIIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR" gene complement(1435760..1436893) /gene="ompN" /locus_tag="b1377" /gene_synonym="ECK1372; JW1371; ynaG" /db_xref="EcoGene:EG13375" /db_xref="GeneID:946313" CDS complement(1435760..1436893) /gene="ompN" /locus_tag="b1377" /gene_synonym="ECK1372; JW1371; ynaG" /function="putative membrane; Not classified" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="outer membrane pore protein N, non-specific" /protein_id="NP_415895.1" /db_xref="GI:16129338" /db_xref="ASAP:ABE-0004608" /db_xref="UniProtKB/Swiss-Prot:P77747" /db_xref="EcoGene:EG13375" /db_xref="GeneID:946313" /translation="MKSKVLALLIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYF SDNSAKDGDQSYARLGFKGETQINDQLTGYGQWEYNIQANNTESSKNQSWTRLAFAGL KFADYGSFDYGRNYGVMYDIEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFF GLVNGLNFAVQYQGNNEGASNGQEGTNNGRDVRHENGDGWGLSTTYDLGMGFSAGAAY TSSDRTNDQVNHTAAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVAN KTQNFEVTAQYQFDFGLRPAVSFLMSKGRDLHAAGGADNPAGVDDKDLVKYADIGATY YFNKNMSTYVDYKINLLDEDDSFYAANGISTDDIVALGLVYQF" gene 1437121..1437229 /gene="micC" /locus_tag="b4427" /gene_synonym="ECK1373; IS063; JWR0234; tke8" /db_xref="EcoGene:EG31144" /db_xref="GeneID:2847713" ncRNA 1437121..1437229 /ncRNA_class="antisense_RNA" /gene="micC" /locus_tag="b4427" /gene_synonym="ECK1373; IS063; JWR0234; tke8" /product="sRNA antisense regulator of OmpC translation, Hfq-dependent" /note="regulatory antisense RNA affecting ompC expression" /db_xref="ASAP:ABE-0047248" /db_xref="EcoGene:EG31144" /db_xref="GeneID:2847713" gene complement(1437260..1440784) /gene="pfo" /locus_tag="b1378" /gene_synonym="ECK1374; JW1372; nifJ; soi-9; ydbK" /db_xref="EcoGene:EG13183" /db_xref="GeneID:946587" CDS complement(1437260..1440784) /gene="pfo" /locus_tag="b1378" /gene_synonym="ECK1374; JW1372; nifJ; soi-9; ydbK" /function="putative enzyme; Not classified" /note="putative oxidoreductase, Fe-S subunit" /codon_start=1 /transl_table=11 /product="pyruvate-flavodoxin oxidoreductase" /protein_id="NP_415896.1" /db_xref="GI:16129339" /db_xref="ASAP:ABE-0004613" /db_xref="UniProtKB/Swiss-Prot:P52647" /db_xref="EcoGene:EG13183" /db_xref="GeneID:946587" /translation="MITIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGL KNVWGDTPRVVEMQSEAGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTP FVLHVAARTVATHALSIFGDHSDVMAVRQTGCAMLCAANVQEAQDFALISQIATLKSR VPFIHFFDGFRTSHEINKIVPLADDTILDLMPQVEIDAHRARALNPEHPVIRGTSANP DTYFQSREATNPWYNAVYDHVEQAMNDFSAATGRQYQPFEYYGHPQAERVIILMGSAI GTCEEVVDELLTRGEKVGVLKVRLYRPFSAKHLLQALPGSVRSVAVLDRTKEPGAQAE PLYLDVMTALAEAFNNGERETLPRVIGGRYGLSSKEFGPDCVLAVFAELNAAKPKARF TVGIYDDVTNLSLPLPENTLPNSAKLEALFYGLGSDGSVSATKNNIKIIGNSTPWYAQ GYFVYDSKKAGGLTVSHLRVSEQPIRSAYLISQADFVGCHQLQFIDKYQMAERLKPGG IFLLNTPYSADEVWSRLPQEVQAVLNQKKARFYVINAAKIARECGLAARINTVMQMAF FHLTQILPGDSALAELQGAIAKSYSSKGQDLVERNWQALALARESVEEVPLQPVNPHS ANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALPPDGTWPMGTTRWEKRNIAEEIP IWKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQV APEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEEKINYDFFLNLPEIDRSKL ERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRMLIANATGCSSIYGGNLP STPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRLLDQFADKIPAELLT ALKSDATPEVRREQVAALRQQLNDVAEAHELLRDADALVEKSIWLIGGDGWAYDIGFG GLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRKARKDLGVSMM MYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLALSHDQMRQL TATGFWPLYRFDPRRADEGKLPLALDSRPPSEAPEETLLHEQRFRRLNSQQPEVAEQL WKDAAADLQKRYDFLAQMAGKAEKSNTD" gene 1441058..1441324 /gene="ydbJ" /locus_tag="b4529" /gene_synonym="ECK1375; JW5215" /db_xref="EcoGene:EG13182" /db_xref="GeneID:4056027" CDS 1441058..1441324 /gene="ydbJ" /locus_tag="b4529" /gene_synonym="ECK1375; JW5215" /GO_component="GO:0009279 - cell outer membrane" /codon_start=1 /transl_table=11 /product="DUF333 family putative lipoprotein" /protein_id="YP_588453.1" /db_xref="GI:94541111" /db_xref="ASAP:ABE-0285050" /db_xref="UniProtKB/Swiss-Prot:P0ACW2" /db_xref="EcoGene:EG13182" /db_xref="GeneID:4056027" /translation="MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEA NCAMIGGSLSVARQLDGTAIGMCALPNGKRCSEQSLAAGSCGSY" gene complement(1441321..1441743) /gene="hslJ" /locus_tag="b1379" /gene_synonym="ECK1376; JW1374; ydbI" /db_xref="EcoGene:EG13181" /db_xref="GeneID:946525" CDS complement(1441321..1441743) /gene="hslJ" /locus_tag="b1379" /gene_synonym="ECK1376; JW1374; ydbI" /function="factor; Adaptations, atypical conditions" /GO_process="GO:0009266 - response to temperature stimulus" /note="heat shock protein hslJ" /codon_start=1 /transl_table=11 /product="heat-inducible lipoprotein involved in novobiocin resistance" /protein_id="NP_415897.1" /db_xref="GI:16129340" /db_xref="ASAP:ABE-0004616" /db_xref="UniProtKB/Swiss-Prot:P52644" /db_xref="EcoGene:EG13181" /db_xref="GeneID:946525" /translation="MKKVAAFVALSLLMAGCVSNDKIAVTPEQLQHHRFVLESVNGKP VTSDKNPPEISFGEKMMISGSMCNRFSGEGKLSNGELTAKGLAMTRMMCANPQLNELD NTISEMLKEGAQVDLTANQLTLATAKQTLTYKLADLMN" gene complement(1441854..1442843) /gene="ldhA" /locus_tag="b1380" /gene_synonym="ECK1377; hslF; hslI; htpH; JW1375" /db_xref="EcoGene:EG13186" /db_xref="GeneID:946315" CDS complement(1441854..1442843) /gene="ldhA" /locus_tag="b1380" /gene_synonym="ECK1377; hslF; hslI; htpH; JW1375" /EC_number="1.1.1.28" /function="enzyme; Energy metabolism, carbon: Fermentation" /GO_process="GO:0006113 - fermentation" /codon_start=1 /transl_table=11 /product="fermentative D-lactate dehydrogenase, NAD-dependent" /protein_id="NP_415898.1" /db_xref="GI:16129341" /db_xref="ASAP:ABE-0004619" /db_xref="UniProtKB/Swiss-Prot:P52643" /db_xref="EcoGene:EG13186" /db_xref="GeneID:946315" /translation="MKLAVYSTKQYDKKYLQQVNESFGFELEFFDFLLTEKTAKTANG CEAVCIFVNDDGSRPVLEELKKHGVKYIALRCAGFNNVDLDAAKELGLKVVRVPAYDP EAVAEHAIGMMMTLNRRIHRAYQRTRDANFSLEGLTGFTMYGKTAGVIGTGKIGVAML RILKGFGMRLLAFDPYPSAAALELGVEYVDLPTLFSESDVISLHCPLTPENYHLLNEA AFEQMKNGVMIVNTSRGALIDSQAAIEALKNQKIGSLGMDVYENERDLFFEDKSNDVI QDDVFRRLSACHNVLFTGHQAFLTAEALTSISQTTLQNLSNLEKGETCPNELV" gene 1443051..1445690 /gene="ydbH" /locus_tag="b1381" /gene_synonym="ECK1378; JW1376" /db_xref="EcoGene:EG13180" /db_xref="GeneID:945949" CDS 1443051..1445690 /gene="ydbH" /locus_tag="b1381" /gene_synonym="ECK1378; JW1376" /codon_start=1 /transl_table=11 /product="putative membrane-anchored protein, function unknown" /protein_id="NP_415899.1" /db_xref="GI:16129342" /db_xref="ASAP:ABE-0004623" /db_xref="UniProtKB/Swiss-Prot:P52645" /db_xref="EcoGene:EG13180" /db_xref="GeneID:945949" /translation="MLGKYKAVLALLLLIILVPLTLLMTLGLWVPTLAGIWLPLGTRI ALDESPRITRKGLIIPDLRYLVGDCQLAHITNASLSHPSRWLLNVGTVELDSACLAKL PQTEQSPAAPKTLAQWQAMLPNTWINIDKLIFSPWQEWQGKLSLALTSDIQQLRYQGE KVKFQGQLKGQQLTVSELDVVAFENQPPVKLVGEFAMPLVPDGLPVSGHATATLNLPQ EPSLVDAELDWQENSGQLIVLARDNGDPLLDLPWQITRQQLTVSDGRWSWPYAGFPLS GRLGVKVDNWQAGLENALVSGRLSVLTQGQAGKGNAVLNFGPGKLSMDNSQLPLQLTG EAKQADLILYARLPAQLSGSLSDPTLTFEPGALLRSKGRVIDSLDIDEIRWPLAGVKV TQRGVDGRLQAILQAHENELGDFVLHMDGLANDFLPDAGRWQWRYWGKGSFTPMNATW DVAGKGEWHDSTITLTDLSTGFDQLQYGTMTVEKPRLILDKPIVWVRDAQHPSFSGAL SLDAGQTLFTGGSVLPPSTLKFSVDGRDPTYFLFKGDLHAGEIGPVRVNGRWDGIRLR GNAWWPKQSLTVFQPLVPPDWKMNLRDGELYAQVAFSAAPEQGFRAGGHGVLKGGSAW MPDNQVNGVDFVLPFRFADGAWHLGTRGPVTLRIAEVINLVTAKNITADLQGRYPWTE EEPLLLTDVSVDVLGGNVLMKQLRMPQHDPALLRLNNLSSSELVSAVNPKQFAMSGAF SGALPLWLNNEKWIVKDGWLANSGPMTLRLDKDTADAVVKDNMTAGSAINWLRYMEIS RSSTKINLDNLGLLTMQANITGTSRVDGKSGTVNLNYHHEENIFTLWRSLRFGDNLQA WLEQNARLPGNDCPQGKECEEKQ" gene 1445687..1445872 /gene="ynbE" /locus_tag="b1382" /gene_synonym="ECK1379; JW1377" /db_xref="EcoGene:EG14298" /db_xref="GeneID:945946" CDS 1445687..1445872 /gene="ynbE" /locus_tag="b1382" /gene_synonym="ECK1379; JW1377" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_415900.1" /db_xref="GI:16129343" /db_xref="ASAP:ABE-0004625" /db_xref="UniProtKB/Swiss-Prot:P64448" /db_xref="EcoGene:EG14298" /db_xref="GeneID:945946" /translation="MKILLAALTSSFMLVGCTPRIEVAAPKEPITINMNVKIEHEIII KADKDVEELLETRSDLF" gene 1445880..1446206 /gene="ydbL" /locus_tag="b1383" /gene_synonym="ECK1380; JW5216" /db_xref="EcoGene:EG13733" /db_xref="GeneID:945943" CDS 1445880..1446206 /gene="ydbL" /locus_tag="b1383" /gene_synonym="ECK1380; JW5216" /codon_start=1 /transl_table=11 /product="DUF1318 family protein" /protein_id="NP_415901.2" /db_xref="GI:90111263" /db_xref="ASAP:ABE-0004627" /db_xref="UniProtKB/Swiss-Prot:P76076" /db_xref="EcoGene:EG13733" /db_xref="GeneID:945943" /translation="MKKTLLLCAFLVGLVSSNVMALTLDEARTQGRVGETFYGYLVAL KTDAETEKLVADINAERKASYQQLAKQNNVSVDDIAKLAGQKLVARAKPGEYVQGING KWVRKF" gene complement(1446378..1447283) /gene="feaR" /locus_tag="b1384" /gene_synonym="ECK1381; JW1379; maoB; maoR; maoX; ydbM" /db_xref="EcoGene:EG13422" /db_xref="GeneID:945941" CDS complement(1446378..1447283) /gene="feaR" /locus_tag="b1384" /gene_synonym="ECK1381; JW1379; maoB; maoR; maoX; ydbM" /function="regulator; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 8631685" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0009310 - amine catabolic process; GO:0009063 - cellular amino acid catabolic process; GO:0006350 - transcription" /note="regulatory protein for 2-phenylethylamine catabolism" /codon_start=1 /transl_table=11 /product="transcriptional activator for tynA and feaB" /protein_id="NP_415902.1" /db_xref="GI:16129345" /db_xref="ASAP:ABE-0004630" /db_xref="UniProtKB/Swiss-Prot:Q47129" /db_xref="EcoGene:EG13422" /db_xref="GeneID:945941" /translation="MNPAVDNEFQQWLSQINQVCGNFTGRLLTERYTGVLDTHFAKGL KLSTVTTSGVNLSRTWQEVKGSDDAWFYTVFQLSGQAIMEQDERQVQIGAGDITLLDA SRPCSLYWQESSKQISLLLPRTLLEQYFPHQKPICAERLDADLPMVQLSHRLLQESMN NPALSETESEAALQAMVCLLRPVLHQRESVQPRRERQFQKVVTLIDDNIREEILRPEW IAGETGMSVRSLYRMFADKGLVVAQYIRNRRLDFCADAIRHAADDEKLAGIGFHWGFS DQSHFSTVFKQRFGMTPGEYRRKFR" gene 1447519..1449018 /gene="feaB" /locus_tag="b1385" /gene_synonym="ECK1382; JW1380; padA; ydbG" /db_xref="EcoGene:EG13179" /db_xref="GeneID:945933" CDS 1447519..1449018 /gene="feaB" /locus_tag="b1385" /gene_synonym="ECK1382; JW1380; padA; ydbG" /EC_number="1.2.1.39" /function="enzyme; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 9043126,9109378" /GO_process="GO:0009310 - amine catabolic process; GO:0009435 - NAD biosynthetic process" /codon_start=1 /transl_table=11 /product="phenylacetaldehyde dehydrogenase" /protein_id="NP_415903.4" /db_xref="GI:90111264" /db_xref="ASAP:ABE-0004637" /db_xref="UniProtKB/Swiss-Prot:P80668" /db_xref="EcoGene:EG13179" /db_xref="GeneID:945933" /translation="MTEPHVAVLSQVQQFLDRQHGLYIDGRPGPAQSEKRLAIFDPAT GQEIASTADANEADVDNAVMSAWRAFVSRRWAGRLPAERERILLRFADLVEQHSEELA QLETLEQGKSIAISRAFEVGCTLNWMRYTAGLTTKIAGKTLDLSIPLPQGARYQAWTR KEPVGVVAGIVPWNFPLMIGMWKVMPALAAGCSIVIKPSETTPLTMLRVAELASEAGI PDGVFNVVTGSGAVCGAALTSHPHVAKISFTGSTATGKGIARTAADHLTRVTLELGGK NPAIVLKDADPQWVIEGLMTGSFLNQGQVCAASSRIYIEAPLFDTLVSGFEQAVKSLQ VGPGMSPVAQINPLVSRAHCDKVCSFLDDAQAQQAELIRGSNGPAGEGYYVAPTLVVN PDAKLRLTREEVFGPVVNLVRVADGEEALQLANDTEYGLTASVWTQNLSQALEYSDRL QAGTVWVNSHTLIDANLPFGGMKQSGTGRDFGPDWLDGWCETKSVCVRY" gene complement(1449076..1451349) /gene="tynA" /locus_tag="b1386" /gene_synonym="ECK1383; JW1381; maoA" /db_xref="EcoGene:EG13140" /db_xref="GeneID:945939" CDS complement(1449076..1451349) /gene="tynA" /locus_tag="b1386" /gene_synonym="ECK1383; JW1381; maoA" /EC_number="1.4.3.21" /function="enzyme; Degradation of small molecules: Amines" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0009310 - amine catabolic process; GO:0009063 - cellular amino acid catabolic process" /note="copper amine oxidase (tyramine oxidase)" /codon_start=1 /transl_table=11 /product="tyramine oxidase, copper-requiring" /protein_id="NP_415904.3" /db_xref="GI:162135920" /db_xref="ASAP:ABE-0004639" /db_xref="UniProtKB/Swiss-Prot:P46883" /db_xref="EcoGene:EG13140" /db_xref="GeneID:945939" /translation="MGSPSLYSARKTTLALAVALSFAWQAPVFAHGGEAHMVPMDKTL KEFGADVQWDDYAQLFTLIKDGAYVKVKPGAQTAIVNGQPLALQVPVVMKDNKAWVSD TFINDVFQSGLDQTFQVEKRPHPLNALTADEIKQAVEIVKASADFKPNTRFTEISLLP PDKEAVWAFALENKPVDQPRKADVIMLDGKHIIEAVVDLQNNKLLSWQPIKDAHGMVL LDDFASVQNIINNSEEFAAAVKKRGITDAKKVITTPLTVGYFDGKDGLKQDARLLKVI SYLDVGDGNYWAHPIENLVAVVDLEQKKIVKIEEGPVVPVPMTARPFDGRDRVAPAVK PMQIIEPEGKNYTITGDMIHWRNWDFHLSMNSRVGPMISTVTYNDNGTKRKVMYEGSL GGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARGKDAPSNAVLLNETIADYTGVP MEIPRAIAVFERYAGPEYKHQEMGQPNVSTERRELVVRWISTVGNYDYIFDWIFHENG TIGIDAGATGIEAVKGVKAKTMHDETAKDDTRYGTLIDHNIVGTTHQHIYNFRLDLDV DGENNSLVAMDPVVKPNTAGGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRLLSNPNKE NRMGNPVSYQIIPYAGGTHPVAKGAQFAPDEWIYHRLSFMDKQLWVTRYHPGERFPEG KYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKP WNFFDETPTLGALKKDK" gene complement(1451597..1453642) /gene="paaZ" /locus_tag="b1387" /gene_synonym="ECK1384; JW1382; maoC; tynP?; ydbN" /db_xref="EcoGene:EG13735" /db_xref="GeneID:945954" CDS complement(1451597..1453642) /gene="paaZ" /locus_tag="b1387" /gene_synonym="ECK1384; JW1382; maoC; tynP?; ydbN" /function="enzyme; Phenylacetic acid degradation" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="oxepin-CoA hydrolase and 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase" /protein_id="NP_415905.1" /db_xref="GI:16129348" /db_xref="ASAP:ABE-0004644" /db_xref="UniProtKB/Swiss-Prot:P77455" /db_xref="EcoGene:EG13735" /db_xref="GeneID:945954" /translation="MQQLASFLSGTWQSGRGRSRLIHHAISGEALWEVTSEGLDMAAA RQFAIEKGAPALRAMTFIERAAMLKAVAKHLLSEKERFYALSAQTGATRADSWVDIEG GIGTLFTYASLGSRELPDDTLWPEDELIPLSKEGGFAARHLLTSKSGVAVHINAFNFP CWGMLEKLAPTWLGGMPAIIKPATATAQLTQAMVKSIVDSGLVPEGAISLICGSAGDL LDHLDSQDVVTFTGSAATGQMLRVQPNIVAKSIPFTMEADSLNCCVLGEDVTPDQPEF ALFIREVVREMTTKAGQKCTAIRRIIVPQALVNAVSDALVARLQKVVVGDPAQEGVKM GALVNAEQRADVQEKVNILLAAGCEIRLGGQADLSAAGAFFPPTLLYCPQPDETPAVH ATEAFGPVATLMPAQNQRHALQLACAGGGSLAGTLVTADPQIARQFIADAARTHGRIQ ILNEESAKESTGHGSPLPQLVHGGPGRAGGGEELGGLRAVKHYMQRTAVQGSPTMLAA ISKQWVRGAKVEEDRIHPFRKYFEELQPGDSLLTPRRTMTEADIVNFACLSGDHFYAH MDKIAAAESIFGERVVHGYFVLSAAAGLFVDAGVGPVIANYGLESLRFIEPVKPGDTI QVRLTCKRKTLKKQRSAEEKPTGVVEWAVEVFNQHQTPVALYSILTLVARQHGDFVD" gene 1453927..1454856 /gene="paaA" /locus_tag="b1388" /gene_synonym="ECK1385; JW1383; ydbO" /db_xref="EcoGene:EG13736" /db_xref="GeneID:945833" CDS 1453927..1454856 /gene="paaA" /locus_tag="b1388" /gene_synonym="ECK1385; JW1383; ydbO" /function="enzyme; Phenylacetic acid degradation" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="ring 1,2-phenylacetyl-CoA epoxidase subunit" /protein_id="NP_415906.1" /db_xref="GI:16129349" /db_xref="ASAP:ABE-0004649" /db_xref="UniProtKB/Swiss-Prot:P76077" /db_xref="EcoGene:EG13736" /db_xref="GeneID:945833" /translation="MTQEERFEQRIAQETAIEPQDWMPDAYRKTLIRQIGQHAHSEIV GMLPEGNWITRAPTLRRKAILLAKVQDEAGHGLYLYSAAETLGCAREDIYQKMLDGRM KYSSIFNYPTLSWADIGVIGWLVDGAAIVNQVALCRTSYGPYARAMVKICKEESFHQR QGFEACMALAQGSEAQKQMLQDAINRFWWPALMMFGPNDDNSPNSARSLTWKIKRFTN DELRQRFVDNTVPQVEMLGMTVPDPDLHFDTESGHYRFGEIDWQEFNEVINGRGICNQ ERLDAKRKAWEEGTWVREAALAHAQKQHARKVA" gene 1454868..1455155 /gene="paaB" /locus_tag="b1389" /gene_synonym="ECK1386; JW1384; ynbF" /db_xref="EcoGene:EG14299" /db_xref="GeneID:947595" CDS 1454868..1455155 /gene="paaB" /locus_tag="b1389" /gene_synonym="ECK1386; JW1384; ynbF" /function="enzyme; Phenylacetic acid degradation" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="putative ring 1,2-phenylacetyl-CoA epoxidase subunit" /protein_id="NP_415907.1" /db_xref="GI:16129350" /db_xref="ASAP:ABE-0004651" /db_xref="UniProtKB/Swiss-Prot:P76078" /db_xref="EcoGene:EG14299" /db_xref="GeneID:947595" /translation="MSNVYWPLYEVFVRGKQGLSHRHVGSLHAADERMALENARDAYT RRSEGCSIWVVKASEIVASQPEERGEFFDPAESKVYRHPTFYTIPDGIEHM" gene 1455164..1455910 /gene="paaC" /locus_tag="b1390" /gene_synonym="ECK1387; JW1385; ydbP" /db_xref="EcoGene:EG13737" /db_xref="GeneID:945956" CDS 1455164..1455910 /gene="paaC" /locus_tag="b1390" /gene_synonym="ECK1387; JW1385; ydbP" /function="enzyme; Phenylacetic acid degradation" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="ring 1,2-phenylacetyl-CoA epoxidase subunit" /protein_id="NP_415908.1" /db_xref="GI:16129351" /db_xref="ASAP:ABE-0004653" /db_xref="UniProtKB/Swiss-Prot:P76079" /db_xref="EcoGene:EG13737" /db_xref="GeneID:945956" /translation="MNQLTAYTLRLGDNCLVLSQRLGEWCGHAPELEIDLALANIGLD LLGQARNFLSYAAELAGEGDEDTLAFTRDERQFSNLLLVEQPNGNFADTIARQYFIDA WHVALFTRLMESRDPQLAAISAKAIKEARYHLRFSRGWLERLGNGTDVSGQKMQQAIN KLWRFTAELFDADEIDIALSEEGIAVDPRTLRAAWEAEVFAGINEATLNVPQEQAYRT GGKKGLHTEHLGPMLAEMQYLQRVLPGQQW" gene 1455925..1456422 /gene="paaD" /locus_tag="b1391" /gene_synonym="ECK1388; JW5217; ydbQ" /db_xref="EcoGene:EG13738" /db_xref="GeneID:945959" CDS 1455925..1456422 /gene="paaD" /locus_tag="b1391" /gene_synonym="ECK1388; JW5217; ydbQ" /function="enzyme; Phenylacetic acid degradation" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="ring 1,2-phenylacetyl-CoA epoxidase subunit" /protein_id="NP_415909.4" /db_xref="GI:226524712" /db_xref="ASAP:ABE-0004655" /db_xref="UniProtKB/Swiss-Prot:P76080" /db_xref="EcoGene:EG13738" /db_xref="GeneID:945959" /translation="MQRLATIAPPQVHEIWALLSQIPDPEIPVLTITDLGMVRNVTQM GEGWVIGFTPTYSGCPATEHLIGAIREAMTTNGFTPVQVVLQLDPAWTTDWMTPDARE RLREYGISPPAGHSCHAHLPPEVRCPRCASVHTTLISEFGSTACKALYRCDSCREPFD YFKCI" gene 1456430..1457500 /gene="paaE" /locus_tag="b1392" /gene_synonym="ECK1389; JW1387; ydbR" /db_xref="EcoGene:EG13739" /db_xref="GeneID:945962" CDS 1456430..1457500 /gene="paaE" /locus_tag="b1392" /gene_synonym="ECK1389; JW1387; ydbR" /function="enzyme; Phenylacetic acid degradation" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="ring 1,2-phenylacetyl-CoA epoxidase, NAD(P)H oxidoreductase component" /protein_id="NP_415910.1" /db_xref="GI:16129353" /db_xref="ASAP:ABE-0004657" /db_xref="UniProtKB/Swiss-Prot:P76081" /db_xref="EcoGene:EG13739" /db_xref="GeneID:945962" /translation="MTTFHSLTVAKVESETRDAVTITFAVPQPLQEAYRFRPGQHLTL KASFDGEELRRCYSICRSYLPGEISVAVKAIEGGRFSRYAREHIRQGMTLEVMVPQGH FGYQPQAERQGRYLAIAAGSGITPMLAIIATTLQTEPESQFTLIYGNRTSQSMMFRQA LADLKDKYPQRLQLLCIFSQETLDSDLLHGRIDGEKLQSLGASLINFRLYDEAFICGP AAMMDDAETALKALGMPDKTIHLERFNTPGTRVKRSVNVQSDGQKVTVRQDGRDREIV LNADDESILDAALRQGADLPYACKGGVCATCKCKVLRGKVAMETNYSLEPDELAAGYV LSCQALPLTSDVVVDFDAKGMA" gene 1457497..1458264 /gene="paaF" /locus_tag="b1393" /gene_synonym="ECK1390; JW1388; ydbR" /db_xref="EcoGene:EG13740" /db_xref="GeneID:946011" CDS 1457497..1458264 /gene="paaF" /locus_tag="b1393" /gene_synonym="ECK1390; JW1388; ydbR" /EC_number="4.2.1.17" /function="enzyme; Phenylacetic acid degradation" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="2,3-dehydroadipyl-CoA hydratase" /protein_id="NP_415911.1" /db_xref="GI:16129354" /db_xref="ASAP:ABE-0004659" /db_xref="UniProtKB/Swiss-Prot:P76082" /db_xref="EcoGene:EG13740" /db_xref="GeneID:946011" /translation="MSELIVSRQQRVLLLTLNRPAARNALNNALLMQLVNELEAAATD TSISVCVITGNARFFAAGADLNEMAEKDLAATLNDTRPQLWARLQAFNKPLIAAVNGY ALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSG ESITAQQAQQAGLVSDVFPSDLTLEYALQLASKMARHSPLALQAAKQALRQSQEVALQ AGLAQERQLFTLLAATEDRHEGISAFLQKRTPDFKGR" gene 1458264..1459052 /gene="paaG" /locus_tag="b1394" /gene_synonym="ECK1391; JW1389; ydbT" /db_xref="EcoGene:EG13741" /db_xref="GeneID:946263" CDS 1458264..1459052 /gene="paaG" /locus_tag="b1394" /gene_synonym="ECK1391; JW1389; ydbT" /EC_number="4.2.1.17" /function="enzyme; Phenylacetic acid degradation" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="1,2-epoxyphenylacetyl-CoA isomerase, oxepin-CoA-forming" /protein_id="NP_415912.1" /db_xref="GI:16129355" /db_xref="ASAP:ABE-0004661" /db_xref="UniProtKB/Swiss-Prot:P77467" /db_xref="EcoGene:EG13741" /db_xref="GeneID:946263" /translation="MMEFILSHVEKGVMTLTLNRPERLNSFNDEMHAQLAECLKQVER DDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPV ICAVNGVAAGAGATLALGGDIVIAARSAKFVMAFSKLGLIPDCGGTWLLPRVAGRARA MGLALLGNQLSAEQAHEWGMIWQVVDDETLADTAQQLARHLATQPTFGLGLIKQAINS AETNTLDTQLDLERDYQRLAGRSADYREGVSAFLAKRSPQFTGK" gene 1459054..1460481 /gene="paaH" /locus_tag="b1395" /gene_synonym="ECK1392; JW1390; ydbU" /db_xref="EcoGene:EG13742" /db_xref="GeneID:945940" CDS 1459054..1460481 /gene="paaH" /locus_tag="b1395" /gene_synonym="ECK1392; JW1390; ydbU" /EC_number="1.1.1.157" /function="enzyme; Phenylacetic acid degradation" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="3-hydroxyadipyl-CoA dehydrogenase, NAD+-dependent" /protein_id="NP_415913.1" /db_xref="GI:16129356" /db_xref="ASAP:ABE-0004663" /db_xref="UniProtKB/Swiss-Prot:P76083" /db_xref="EcoGene:EG13742" /db_xref="GeneID:945940" /translation="MMINVQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRA IDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIHALAAADLVIEAASERLEVKKAL FAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNPAPVMKLVEVVSGLA TAAEVVEQLCELTLSWGKQPVRCHSTPGFIVNRVARPYYSEAWRALEEQVAAPEVIDA ALRDGAGFPMGPLELTDLIGQDVNFAVTCSVFNAFWQERRFLPSLVQQELVIGGRLGK KSGLGVYDWRAEREAVVGLEAVSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALA IRLARPVVVIDKMAGKVVTIAAAAVNPDSATRKAIYYLQQQGKTVLQIADYPGMLIWR TVAMIINEALDALQKGVASEQDIDTAMRLGVNYPYGPLAWGAQLGWQRILRLLENLQH HYGEERYRPCSLLRQRALLESGYES" gene 1460471..1460893 /gene="paaI" /locus_tag="b1396" /gene_synonym="ECK1393; JW1391; ydbV" /db_xref="EcoGene:EG13743" /db_xref="GeneID:945265" CDS 1460471..1460893 /gene="paaI" /locus_tag="b1396" /gene_synonym="ECK1393; JW1391; ydbV" /function="enzyme; Phenylacetic acid degradation" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="hydroxyphenylacetyl-CoA thioesterase" /protein_id="NP_415914.1" /db_xref="GI:16129357" /db_xref="ASAP:ABE-0004666" /db_xref="UniProtKB/Swiss-Prot:P76084" /db_xref="EcoGene:EG13743" /db_xref="GeneID:945265" /translation="MSHKAWQNAHAMYENDACAKALGIDIISMDEGFAVVTMTVTAQM LNGHQSCHGGQLFSLADTAFAYACNSQGLAAVASACTIDFLRPGFAGDTLTATAQVRH QGKQTGVYDIEIVNQQQKTVALFRGKSHRIGGTITGEA" gene 1460893..1462098 /gene="paaJ" /locus_tag="b1397" /gene_synonym="ECK1394; JW1392; ydbW" /db_xref="EcoGene:EG13744" /db_xref="GeneID:946121" CDS 1460893..1462098 /gene="paaJ" /locus_tag="b1397" /gene_synonym="ECK1394; JW1392; ydbW" /function="enzyme; Phenylacetic acid degradation" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="3-oxoadipyl-CoA/3-oxo-5,6-dehydrosuberyl-CoA thiolase" /protein_id="NP_415915.1" /db_xref="GI:16129358" /db_xref="ASAP:ABE-0004668" /db_xref="UniProtKB/Swiss-Prot:P0C7L2" /db_xref="EcoGene:EG13744" /db_xref="GeneID:946121" /translation="MREAFICDGIRTPIGRYGGALSSVRADDLAAIPLRELLVRNPRL DAECIDDVILGCANQAGEDNRNVARMATLLAGLPQSVSGTTINRLCGSGLDALGFAAR AIKAGDGDLLIAGGVESMSRAPFVMGKAASAFSRQAEMFDTTIGWRFVNPLMAQQFGT DSMPETAENVAELLKISREDQDSFALRSQQRTAKAQSSGILAEEIVPVVLKNKKGVVT EIQHDEHLRPETTLEQLRGLKAPFRANGVITAGNASGVNDGAAALIIASEQMAAAQGL TPRARIVAMATAGVEPRLMGLGPVPATRRVLERAGLSIHDMDVIELNEAFAAQALGVL RELGLPDDAPHVNPNGGAIALGHPLGMSGARLALAASHELHRRNGRYALCTMCIGVGQ GIAMILERV" gene 1462125..1463438 /gene="paaK" /locus_tag="b1398" /gene_synonym="ECK1395; JW5218" /db_xref="EcoGene:EG13745" /db_xref="GeneID:945963" CDS 1462125..1463438 /gene="paaK" /locus_tag="b1398" /gene_synonym="ECK1395; JW5218" /EC_number="6.2.1.30" /function="enzyme; Phenylacetic acid degradation" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="phenylacetyl-CoA ligase" /protein_id="NP_415916.1" /db_xref="GI:16129359" /db_xref="ASAP:ABE-0004671" /db_xref="UniProtKB/Swiss-Prot:P76085" /db_xref="EcoGene:EG13745" /db_xref="GeneID:945963" /translation="MITNTKLDPIETASVDELQALQTQRLKWTLKHAYENVPMYRRKF DAAGVHPDDFRELSDLRKFPCTTKQDLRDNYPFDTFAVPMEQVVRIHASSGTTGKPTV VGYTQNDIDNWANIVARSLRAAGGSPKDKIHVAYGYGLFTGGLGAHYGAERLGATVIP MSGGQTEKQAQLIRDFQPDMIMVTPSYCLNLIEELERQLGGDASGCSLRVGVFGAEPW TQAMRKEIERRLGITALDIYGLSEVMGPGVAMECLETTDGPTIWEDHFYPEIVNPHDG TPLADGEHGELLFTTLTKEALPVIRYRTRDLTRLLPGTARTMRRMDRISGRSDDMLII RGVNVFPSQLEEEIVKFEHLSPHYQLEVNRRGHLDSLSVKVELKESSLTLTHEQRCQV CHQLRHRIKSMVGISTDVMIVNCGSIPRSEGKACRVFDLRNIVGA" gene 1463539..1464489 /gene="paaX" /locus_tag="b1399" /gene_synonym="ECK1396; JW1394; ydbY" /db_xref="EcoGene:EG13746" /db_xref="GeneID:945966" CDS 1463539..1464489 /gene="paaX" /locus_tag="b1399" /gene_synonym="ECK1396; JW1394; ydbY" /function="regualtor: Phenylacetic acid degradation" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl-CoA inducer" /protein_id="NP_415917.1" /db_xref="GI:16129360" /db_xref="ASAP:ABE-0004674" /db_xref="UniProtKB/Swiss-Prot:P76086" /db_xref="EcoGene:EG13746" /db_xref="GeneID:945966" /translation="MSKLDTFIQHAVNAVPVSGTSLISSLYGDSLSHRGGEIWLGSLA ALLEGLGFGERFVRTALFRLNKEGWLDVSRIGRRSFYSLSDKGLRLTRRAESKIYRAE QPAWDGKWLLLLSEGLDKSTLADVKKQLIWQGFGALAPSLMASPSQKLADVQTLLHEA GVADNVICFEAQIPLALSRAALRARVEECWHLTEQNAMYETFIQSFRPLVPLLKEAAD ELTPERAFHIQLLLIHFYRRVVLKDPLLPEELLPAHWAGHTARQLCINIYQRVAPAAL AFVSEKGETSVGELPAPGSLYFQRFGGLNIEQEALCQFIR" gene 1464471..1465061 /gene="paaY" /locus_tag="b1400" /gene_synonym="ECK1397; JW1395; ydbZ" /db_xref="EcoGene:EG13747" /db_xref="GeneID:945965" CDS 1464471..1465061 /gene="paaY" /locus_tag="b1400" /gene_synonym="ECK1397; JW1395; ydbZ" /function="enzyme; Phenylacetic acid degradation" /codon_start=1 /transl_table=11 /product="thioesterase required for phenylacetic acid degradation; trimeric; phenylacetate regulatory and detoxification protein; hexapeptide repeat protein" /protein_id="NP_415918.1" /db_xref="GI:16129361" /db_xref="ASAP:ABE-0004676" /db_xref="UniProtKB/Swiss-Prot:P77181" /db_xref="EcoGene:EG13747" /db_xref="GeneID:945965" /translation="MPIYQIDGLTPVVPEESFVHPTAVLIGDVILGKGVYVGPNASLR GDFGRIVVKDGANIQDNCVMHGFPEQDTVVGEDGHIGHSAILHGCIIRRNALVGMNAV VMDGAVIGENSIVGASAFVKAKAEMPANYLIVGSPAKAIRELSEQELAWKKQGTHEYQ VLVTRCKQTLHQVEPLREIEPGRKRLVFDENLRPKQ" gene complement(1465165..1465230) /gene="ynbG" /locus_tag="b4674" /gene_synonym="ECK4489" /db_xref="EcoGene:EG14479" /db_xref="GeneID:7751614" CDS complement(1465165..1465230) /gene="ynbG" /locus_tag="b4674" /gene_synonym="ECK4489" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_002791240.1" /db_xref="GI:226524713" /db_xref="UniProtKB/Swiss-Prot:C1P600" /db_xref="EcoGene:EG14479" /db_xref="GeneID:7751614" /translation="MKYINCVYNINYKLKPHSHYK" gene join(1465392..1467904,1469241..1469293,1470517..1474013) /gene="ydbA" /locus_tag="b4492" /gene_synonym="ECK1398; JW1402; JW5802" /pseudo /db_xref="EcoGene:EG11307" /db_xref="GeneID:2847750" CDS join(1465392..1467904,1469241..1469293,1470517..1474013) /gene="ydbA" /locus_tag="b4492" /gene_synonym="ECK1398; JW1402; JW5802" /note="pseudogene, autotransporter homolog; interrupted by IS2 and IS30" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0004680" /db_xref="ASAP:ABE-0004694" /db_xref="ASAP:ABE-0285093" /db_xref="UniProtKB/Swiss-Prot:P33666" /db_xref="EcoGene:EG11307" /db_xref="GeneID:2847750" mobile_element complement(1467910..1469240) /mobile_element_type="insertion sequence:IS2D" gene complement(1467921..1468826) /gene="insD1" /locus_tag="b1402" /gene_synonym="ECK0358" /db_xref="EcoGene:EG40004" /db_xref="GeneID:945952" CDS complement(1467921..1468826) /gene="insD1" /locus_tag="b1402" /gene_synonym="ECK0358" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_415920.1" /db_xref="GI:16129363" /db_xref="ASAP:ABE-0004683" /db_xref="UniProtKB/Swiss-Prot:P0CF54" /db_xref="EcoGene:EG40004" /db_xref="GeneID:945952" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" gene complement(1468784..1469149) /gene="insC1" /locus_tag="b1403" /gene_synonym="ECK0357" /db_xref="EcoGene:EG40003" /db_xref="GeneID:945967" CDS complement(1468784..1469149) /gene="insC1" /locus_tag="b1403" /gene_synonym="ECK0357" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_415921.2" /db_xref="GI:145698254" /db_xref="ASAP:ABE-0004685" /db_xref="UniProtKB/Swiss-Prot:P0CF41" /db_xref="EcoGene:EG40003" /db_xref="GeneID:945967" /translation="MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAAS QLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVE YGRAKKWIAHAPLLPGDGE" mobile_element 1469296..1470516 /mobile_element_type="insertion sequence:IS30C" gene 1469358..1470509 /gene="insI1" /locus_tag="b1404" /gene_synonym="ECK0258" /db_xref="EcoGene:EG40009" /db_xref="GeneID:945968" CDS 1469358..1470509 /gene="insI1" /locus_tag="b1404" /gene_synonym="ECK0258" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS30 transposase" /protein_id="NP_415922.1" /db_xref="GI:16129365" /db_xref="ASAP:ABE-0004691" /db_xref="UniProtKB/Swiss-Prot:P0CF89" /db_xref="EcoGene:EG40009" /db_xref="GeneID:945968" /translation="MRRTFTAEEKASVFELWKNGTGFSEIANILGSKPGTIFTMLRDT GGIKPHERKRAVAHLTLSEREEIRAGLSAKMSIRAIATALNRSPSTISREVQRNRGRR YYKAVDANNRANRMAKRPKPCLLDQNLPLRKLVLEKLEMKWSPEQISGWLRRTKPRQK TLRISPETIYKTLYFRSREALHHLNIQHLRRSHSLRHGRRHTRKGERGTINIVNGTPI HERSRNIDNRRSLGHWEGDLVSGTKNSHIATLVDRKSRYTIILRLRGKDSVSVNQALT DKFLSLPSELRKSLTWDRGMELARHLEFTVSTGVKVYFCDPQSPWQRGTNENTNGLIR QYFPKKTCLAQYTQHELDLVAAQLNNRPRKTLKFKTPKEIIERGVALTD" gene 1474221..1475081 /gene="ydbC" /locus_tag="b1406" /gene_synonym="ECK1399; JW1403" /db_xref="EcoGene:EG11309" /db_xref="GeneID:945980" CDS 1474221..1475081 /gene="ydbC" /locus_tag="b1406" /gene_synonym="ECK1399; JW1403" /function="putative enzyme; Not classified" /note="putative dehydrogenase" /codon_start=1 /transl_table=11 /product="putative NAD(P)-binding oxidoreductase" /protein_id="NP_415924.1" /db_xref="GI:16129367" /db_xref="ASAP:ABE-0004698" /db_xref="UniProtKB/Swiss-Prot:P25906" /db_xref="EcoGene:EG11309" /db_xref="GeneID:945980" /translation="MSSNTFTLGTKSVNRLGYGAMQLAGPGVFGPPRDRHVAITVLRE ALALGVNHIDTSDFYGPHVTNQIIREALYPYSDDLTIVTKIGARRGEDASWLPAFSPA ELQKAVHDNLRNLGLDVLDVVNLRVMMGDGHGPAEGSIEASLTVLAEMQQQGLVKHIG LSNVTPTQVAEARKIAEIVCVQNEYNIAHRADDAMIDALAHDGIAYVPFFPLGGFTPL QSSTLSDVAASLGATPMQVALAWLLQRSPNILLIPGTSSVAHLRENMAAEKLHLSEEV LSTLDGISRE" gene 1475144..1477450 /gene="ydbD" /locus_tag="b1407" /gene_synonym="ECK1400; JW5221" /db_xref="EcoGene:EG11310" /db_xref="GeneID:945983" CDS 1475144..1477450 /gene="ydbD" /locus_tag="b1407" /gene_synonym="ECK1400; JW5221" /codon_start=1 /transl_table=11 /product="PF10971 family putative periplasmic methylglyoxal resistance protein" /protein_id="NP_415925.2" /db_xref="GI:90111266" /db_xref="ASAP:ABE-0004701" /db_xref="UniProtKB/Swiss-Prot:P25907" /db_xref="EcoGene:EG11310" /db_xref="GeneID:945983" /translation="MLKARNCGWIRLLPLFMLSLPVQAELRCVANAVDIESFFSAATA EDKQQVEQAINSSVNLVPFGLSASNWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNIS TFSLSNPWVILGNVTATNIVADSPLLITGSINASGLVFIDSYYDNPSTIKGSINARGI FINDIIAPVVASSTNSEFMVRASDKHDTENVKKALMIINPDAYYWGLINDEDALKEIF KRSNIRMAGNVCNQMKKEALFRPKPSPELVQELQMLDEGKVAAFEGRDIATFDLAVMR TLPRLKGISANLRKQLINSNDEQTIESMARYMPDNEILELTDQQLGYQPVVLGLLDRE PLSVEIMTRMSRLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQELYKDAWLLPES IIDGYIRSDDSSIRQVGAGGQLTYNQAMQLANDSSNNVVTSLAFKLAEMKHHGQLLRM TPQESDKVAGYLYQKFENDDDLIRVLFLALPDNLQFNFVKRMEKKSPAYFCCRDMQVI HSDAALQRLLTRFNDPEGWSNLAKNQYLSTSMKQKIWQRALSHRKNNPKADSDAYETS ADMILSELISHGEVDDQMLLNATALIRSDDWDFLESALISWDNLPAVVLKELQQNTPR NDIWAKFFLRQENSSRAQVDEALRVYYALDPDALAQLDVLAKQPDRIWWSTLAKSNLT FFKFGALNNRHTPPAVLAAEIDPEWWIVAMNNPRFPVDVLKARLKRDPLLALELVNPE LDLVRQLALNGKTRAIREQAMRKLDELY" gene 1477621..1478226 /gene="ynbA" /locus_tag="b1408" /gene_synonym="ECK1401; JW1405" /db_xref="EcoGene:EG13748" /db_xref="GeneID:945973" CDS 1477621..1478226 /gene="ynbA" /locus_tag="b1408" /gene_synonym="ECK1401; JW1405" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="inner membrane protein" /protein_id="NP_415926.4" /db_xref="GI:90111267" /db_xref="ASAP:ABE-0004704" /db_xref="UniProtKB/Swiss-Prot:P76090" /db_xref="EcoGene:EG13748" /db_xref="GeneID:945973" /translation="MTLYQIKPLFQSLLRPTMFWLYKHHVTANHITLAALALSLLTGL LLMLAAQPILFLLLPIVLFIRMALNALDGMLARECNQQTRLGAILNETGDVISDIALY LPFLFLPESNASLVILMLFCTILTEFCGLLAQTINGVRSYAGPFGKSDRALIFGLWGL AVAIYPQWMQWNNLLWSIASILLLWTAINRCRSVLLMSAEI" gene 1478226..1479122 /gene="ynbB" /locus_tag="b1409" /gene_synonym="ECK1402; JW1406" /db_xref="EcoGene:EG13749" /db_xref="GeneID:945972" CDS 1478226..1479122 /gene="ynbB" /locus_tag="b1409" /gene_synonym="ECK1402; JW1406" /function="putative enzyme; Central intermediary metabolism: Nucleotide interconversions" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /note="putative phosphatidate cytidiltransferase" /codon_start=1 /transl_table=11 /product="putative CDP-diglyceride synthase" /protein_id="NP_415927.1" /db_xref="GI:16129370" /db_xref="ASAP:ABE-0004706" /db_xref="UniProtKB/Swiss-Prot:P76091" /db_xref="EcoGene:EG13749" /db_xref="GeneID:945972" /translation="MLEKSLATLFALLILATLINRFLLWRLPERKGGEVTLRIRTWWG IVICFSMVISGPRWMTLTFFALISFLALKEYCTLISVHFPRWLYWGIPLNYLLIGFNC FELFLLFIPLAGFLILATGQVLVGDPSGFLHTVSAIFWGWIMTVFALSHAAWLLMLPT TNIQGGALLVLFLLALTESNDIAQYLWGKSCGRRKVVPKVSPGKTLEGLMGGVITIMI ASLIIGPLLTPLNTLQALLAGLLIGISGFCGDVVMSAIKRDIGVKDSGKLLPGHGGLL DRIDSLIFTAPVFFYFIRYCCY" gene 1479138..1480895 /gene="ynbC" /locus_tag="b1410" /gene_synonym="ECK1403; JW1407" /db_xref="EcoGene:EG13750" /db_xref="GeneID:945970" CDS 1479138..1480895 /gene="ynbC" /locus_tag="b1410" /gene_synonym="ECK1403; JW1407" /codon_start=1 /transl_table=11 /product="putative esterase" /protein_id="NP_415928.1" /db_xref="GI:16129371" /db_xref="ASAP:ABE-0004708" /db_xref="UniProtKB/Swiss-Prot:P76092" /db_xref="EcoGene:EG13750" /db_xref="GeneID:945970" /translation="MENSRIPGEHFFTTSDNTALFYRHWPALQPGAKKVIVLFHRGHE HSGRLQHLVDELAMPDTAFYAWDARGHGKSSGPRGYSPSLARSVRDVDEFVRFAASDS QVGLEEVVVIAQSVGAVLVATWIHDYAPAIRGLVLASPAFKVKLYVPLARPALALWHR LRGLFFINSYVKGRYLTHDRQRGASFNNDPLITRAIAVNILLDLYKTSERIIRDAAAI TLPTQLLISGDDYVVHRQPQIDFYQRLRSPLKELHLLPGFYHDTLGEENRALAFEKMQ SFISRLYANKSQKFDYQHEDCTGPSADRWRLLSGGPVPLSPVDLAYRFMRKAMKLFGT HSSGLHLGMSTGFDSGSSLDYVYQNQPQGSNAFGRLVDKIYLNSVGWRGIRQRKTHLQ ILIKQAVADLHAKGLAVRVVDIAAGHGRYVLDALANEPAVSDILLRDYSELNVAQGQE MIAQRGMSGRVRFEQGDAFNPEELSALTPRPTLAIVSGLYELFPENEQVKNSLAGLAN AIEPGGILIYTGQPWHPQLEMIAGVLTSHKDGKPWVMRVRSQGEMDSLVRDAGFDKCT QRIDEWGIFTVSMAVRRDN" gene 1480909..1482201 /gene="ynbD" /locus_tag="b1411" /gene_synonym="ECK1404; JW1408" /db_xref="EcoGene:EG13751" /db_xref="GeneID:945985" CDS 1480909..1482201 /gene="ynbD" /locus_tag="b1411" /gene_synonym="ECK1404; JW1408" /function="putative enzyme; Not classified" /note="putative enzymes" /codon_start=1 /transl_table=11 /product="putative phosphatase inner membrane protein" /protein_id="NP_415929.1" /db_xref="GI:16129372" /db_xref="ASAP:ABE-0004710" /db_xref="UniProtKB/Swiss-Prot:P76093" /db_xref="EcoGene:EG13751" /db_xref="GeneID:945985" /translation="MLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDIPSQVFGWE TAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRLVHRLILATVMACCGFLLYPLKF SFIRPEVSGVTGWLFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAERWRKVCGGW FLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIKIALPYVVG AGSCIVLMELMMMIQLWWSVWLCWPVLSLLIIGRGYGGLGAITTGKDSQGKLPPAVYW LTLPCRIGMWLSMRWFCRRLEPVSKMTAGVYLGAFPRHIPAQNAVLDVTFEFPRGRAT KDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSALVVAAWLL CYGHCKTVNEAISYIRARRPQIVLTDEHKAMLRLWENR" gene complement(1482255..1482860) /gene="azoR" /locus_tag="b1412" /gene_synonym="acpD; ECK1405; JW1409" /db_xref="EcoGene:EG12695" /db_xref="GeneID:947569" CDS complement(1482255..1482860) /gene="azoR" /locus_tag="b1412" /gene_synonym="acpD; ECK1405; JW1409" /EC_number="3.1.4.14" /function="enzyme; Fatty acid and phosphatidic acid biosynthesis" /note="acyl carrier protein phosphodiesterase" /codon_start=1 /transl_table=11 /product="NADH-azoreductase, FMN-dependent" /protein_id="NP_415930.1" /db_xref="GI:16129373" /db_xref="ASAP:ABE-0004712" /db_xref="UniProtKB/Swiss-Prot:P41407" /db_xref="EcoGene:EG12695" /db_xref="GeneID:947569" /translation="MSKVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLA ANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNIS TQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTF LGFIGITDVKFVFAEGIAYGPEMAAKAQSDAKAAIDSIVSA" gene 1483061..1486963 /gene="hrpA" /locus_tag="b1413" /gene_synonym="ECK1406; JW5905" /db_xref="EcoGene:EG12936" /db_xref="GeneID:948444" CDS 1483061..1486963 /gene="hrpA" /locus_tag="b1413" /gene_synonym="ECK1406; JW5905" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication" /note="helicase, ATP-dependent" /codon_start=1 /transl_table=11 /product="putative ATP-dependent helicase" /protein_id="NP_415931.4" /db_xref="GI:145698255" /db_xref="ASAP:ABE-0004718" /db_xref="UniProtKB/Swiss-Prot:P43329" /db_xref="EcoGene:EG12936" /db_xref="GeneID:948444" /translation="MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQ AIFQEMAKEIDQAAGKVLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGET GSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRF SDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLP RRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ AIFDAVDELSQESHGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNR VFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQAS ANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAA FPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLE AQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWNYLG EQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHI ALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGR IAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQI DPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEF YDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGN LKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPV RRNFVPAPNYAEAFLGRVKPLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKIT FRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYE QKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEK LPNKAKLGLYFNPYGKVLELIDDCISCGVDKLIDANGGPVWTEEGFAALHEKVRAELN DTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFK RLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVK EIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG" gene 1487235..1488035 /gene="ydcF" /locus_tag="b1414" /gene_synonym="ECK1407; JW1411" /db_xref="EcoGene:EG12110" /db_xref="GeneID:946215" CDS 1487235..1488035 /gene="ydcF" /locus_tag="b1414" /gene_synonym="ECK1407; JW1411" /codon_start=1 /transl_table=11 /product="DUF218 superfamily protein, SAM-binding" /protein_id="NP_415932.1" /db_xref="GI:16129375" /db_xref="ASAP:ABE-0004722" /db_xref="UniProtKB/Swiss-Prot:P34209" /db_xref="EcoGene:EG12110" /db_xref="GeneID:946215" /translation="MNITPFPTLSPATIDAINVIGQWLAQDDFSGEVPYQADCVILAG NAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTTGRAEATIL ADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQDPTMQRRTM ATFRRMTGDNPDAPRWLSYPGFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPR LRDDSDGYGPRGRDFIVHVDFPAEVIHAWQTLKHDAVLIEAMESRSLR" gene 1488232..1489671 /gene="aldA" /locus_tag="b1415" /gene_synonym="ald; ECK1408; JW1412" /db_xref="EcoGene:EG10035" /db_xref="GeneID:945672" CDS 1488232..1489671 /gene="aldA" /locus_tag="b1415" /gene_synonym="ald; ECK1408; JW1412" /EC_number="1.2.1.22" /function="enzyme; Energy metabolism, carbon: Fermentation" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006113 - fermentation; GO:0009441 - glycolate metabolic process; GO:0009438 - methylglyoxal metabolic process" /note="aldehyde dehydrogenase, NAD-linked" /codon_start=1 /transl_table=11 /product="aldehyde dehydrogenase A, NAD-linked" /protein_id="NP_415933.1" /db_xref="GI:16129376" /db_xref="ASAP:ABE-0004725" /db_xref="UniProtKB/Swiss-Prot:P25553" /db_xref="EcoGene:EG10035" /db_xref="GeneID:945672" /translation="MSVPVQHPMYIDGQFVTWRGDAWIDVVNPATEAVISRIPDGQAE DARKAIDAAERAQPEWEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQQLAE VEVAFTADYIDYMAEWARRYEGEIIQSDRPGENILLFKRALGVTTGILPWNFPFFLIA RKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAG NPKVAMVSMTGSVSAGEKIMATAAKNITKVCLELGGKAPAIVMDDADLELAVKAIVDS RVINSGQVCNCAERVYVQKGIYDQFVNRLGEAMQAVQFGNPAERNDIAMGPLINAAAL ERVEQKVARAVEEGARVAFGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVV AFDTLEDAISMANDSDYGLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHA GWRKSGIGGADGKHGLHEYLQTQVVYLQS" repeat_region 1489683..1489704 /note="REP116 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1489713..1490713) /gene="gapC" /locus_tag="b4493" /gene_synonym="ECK1409; JW1413; JW5906" /pseudo /db_xref="EcoGene:EG12103" /db_xref="GeneID:2847738" CDS complement(join(1489713..1489964,1489964..1490713)) /gene="gapC" /locus_tag="b4493" /gene_synonym="ECK1409; JW1413; JW5906" /note="pseudogene, GAP dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase (second fragment)" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0004727" /db_xref="ASAP:ABE-0004729" /db_xref="ASAP:ABE-0285094" /db_xref="UniProtKB/Swiss-Prot:P33898" /db_xref="EcoGene:EG12103" /db_xref="GeneID:2847738" gene 1490902..1491432 /gene="cybB" /locus_tag="b1418" /gene_synonym="ECK1410; JW5224" /db_xref="EcoGene:EG10172" /db_xref="GeneID:947241" CDS 1490902..1491432 /gene="cybB" /locus_tag="b1418" /gene_synonym="ECK1410; JW5224" /function="enzyme; Energy metabolism, carbon: Electron transport" /GO_function="GO:0009055 - electron carrier activity" /GO_process="GO:0017004 - cytochrome complex assembly" /codon_start=1 /transl_table=11 /product="cytochrome b561" /protein_id="NP_415935.2" /db_xref="GI:90111268" /db_xref="ASAP:ABE-0004733" /db_xref="UniProtKB/Swiss-Prot:P0ABE5" /db_xref="EcoGene:EG10172" /db_xref="GeneID:947241" /translation="MENKYSRLQISIHWLVFLLVIAAYCAMEFRGFFPRSDRPLINMI HVSCGISILVLMVVRLLLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGL VMMYNRGNPWFAFGLTMPYASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHY FWKDNTLLRMMPRKRS" gene complement(1491443..1491506) /gene="rydC" /locus_tag="b4597" /gene_synonym="ECK4407; IS067" /db_xref="EcoGene:EG31168" /db_xref="GeneID:5061508" ncRNA complement(1491443..1491506) /ncRNA_class="antisense_RNA" /gene="rydC" /locus_tag="b4597" /gene_synonym="ECK4407; IS067" /product="sRNA antisense regulator of csgD and yejABEF, Hfq-dependent" /db_xref="EcoGene:EG31168" /db_xref="GeneID:5061508" gene 1491677..1491850 /gene="ydcA" /locus_tag="b1419" /gene_synonym="ECK1411; JW1416" /db_xref="EcoGene:EG11219" /db_xref="GeneID:945986" CDS 1491677..1491850 /gene="ydcA" /locus_tag="b1419" /gene_synonym="ECK1411; JW1416" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_415936.1" /db_xref="GI:16129378" /db_xref="ASAP:ABE-0004736" /db_xref="UniProtKB/Swiss-Prot:P0ACW4" /db_xref="EcoGene:EG11219" /db_xref="GeneID:945986" /translation="MKKLALILFMGTLVSFYADAGRKPCSGSKGGISHCTAGGKFVCN DGSISASKKTCTN" gene complement(1491922..1492071) /gene="hokB" /locus_tag="b4428" /gene_synonym="ECK1412; JW5225; ydcB" /db_xref="EcoGene:EG11240" /db_xref="GeneID:2847727" CDS complement(1491922..1492071) /gene="hokB" /locus_tag="b4428" /gene_synonym="ECK1412; JW5225; ydcB" /note="small toxic membrane polypeptide" /codon_start=1 /transl_table=11 /product="toxic polypeptide, small" /protein_id="YP_025301.1" /db_xref="GI:49176107" /db_xref="ASAP:ABE-0047283" /db_xref="UniProtKB/Swiss-Prot:P77494" /db_xref="EcoGene:EG11240" /db_xref="GeneID:2847727" /translation="MKHNPLVVCLLIICITILTFTLLTRQTLYELRFRDGDKEVAALM ACTSR" gene complement(1491962..1492129) /gene="mokB" /locus_tag="b1420" /gene_synonym="ECK1413; JW5882" /db_xref="EcoGene:EG20260" /db_xref="GeneID:948820" CDS complement(1491962..1492129) /gene="mokB" /locus_tag="b1420" /gene_synonym="ECK1413; JW5882" /note="regulatory peptide whose translation enables hokB expression" /codon_start=1 /transl_table=11 /product="regulatory peptide" /protein_id="NP_415937.1" /db_xref="GI:16129379" /db_xref="ASAP:ABE-0004738" /db_xref="UniProtKB/Swiss-Prot:P76096" /db_xref="EcoGene:EG20260" /db_xref="GeneID:948820" /translation="MNLAIQILASYPPSGKEKGYEAQPSGGVSAHYLHYDSDIHTPDP TNALRTAVPGR" gene 1492119..1492174 /gene="sokB" /locus_tag="b4429" /gene_synonym="ECK1414; JWR0235" /db_xref="EcoGene:EG31127" /db_xref="GeneID:2847728" ncRNA 1492119..1492174 /ncRNA_class="antisense_RNA" /gene="sokB" /locus_tag="b4429" /gene_synonym="ECK1414; JWR0235" /product="sRNA antisense regulator blocking mokB, and hence hokB, translation" /note="antisense RNA blocking mokB and hokB translation" /function="component of addiction module" /db_xref="ASAP:ABE-0047249" /db_xref="EcoGene:EG31127" /db_xref="GeneID:2847728" gene 1492470..1494110 /gene="trg" /locus_tag="b1421" /gene_synonym="ECK1415; JW1417" /db_xref="EcoGene:EG11018" /db_xref="GeneID:945995" CDS 1492470..1494110 /gene="trg" /locus_tag="b1421" /gene_synonym="ECK1415; JW1417" /function="regulator; Chemotaxis and mobility" /GO_component="GO:0019866 - organelle inner membrane" /GO_process="GO:0042330 - taxis" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor" /protein_id="NP_415938.1" /db_xref="GI:16129380" /db_xref="ASAP:ABE-0004744" /db_xref="UniProtKB/Swiss-Prot:P05704" /db_xref="EcoGene:EG11018" /db_xref="GeneID:945995" /translation="MNTTPSQRLGFLHHIRLVPLFACILGGILVLFALSSALAGYFLW QADRDQRDVTAEIEIRTGLANSSDFLRSARINMIQAGAASRIAEMEAMKRNIAQAESE IKQSQQGYRAYQNRPVKTPADEALDTELNQRFQAYITGMQPMLKYAKNGMFEAIINHE SEQIRPLDNAYTDILNKAVKIRSTRANQLAELAHQRTRLGGMFMIGAFVLALVMTLIT FMVLRRIVIRPLQHAAQRIEKIASGDLTMNDEPAGRNEIGRLSRHLQQMQHSLGMTVG TVRQGAEEIYRGTSEISAGNADLSSRTEEQAAAIEQTAASMEQLTATVKQNADNAHHA SKLAQEASIKASDGGQTVSGVVKTMGAISTSSKKISEITAVINSIAFQTNILALNAAV EAARAGEQGRGFAVVASEVRTLASRSAQAAKEIEGLISESVRLIDLGSDEVATAGKTM STIVDAVASVTHIMQEIAAASDEQSRGITQVSQAISEMDKVTQQNASLVEEASAAAVS LEEQAARLTEAVDVFRLHKHSVSAEPRGAGEPVSFATV" gene complement(1494148..1495071) /gene="ydcI" /locus_tag="b1422" /gene_synonym="ECK1416; JW5226" /db_xref="EcoGene:EG13752" /db_xref="GeneID:948865" CDS complement(1494148..1495071) /gene="ydcI" /locus_tag="b1422" /gene_synonym="ECK1416; JW5226" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator" /protein_id="NP_415939.2" /db_xref="GI:90111269" /db_xref="ASAP:ABE-0004746" /db_xref="UniProtKB/Swiss-Prot:P77171" /db_xref="EcoGene:EG13752" /db_xref="GeneID:948865" /translation="MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSK TLNELEQLTGARLFERGRQGAQLTLPGEQFLTHAVRVLDAINTAGRSLHRKEGLNNDV VRVGALPTAALGILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSD PELMTGLNYELLFLESLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDAL VQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGA GEPIGILTRVDATFSSGCQLMINAIRKSMPF" gene 1495288..1496631 /gene="ydcJ" /locus_tag="b1423" /gene_synonym="ECK1417; JW1419" /db_xref="EcoGene:EG13753" /db_xref="GeneID:945991" CDS 1495288..1496631 /gene="ydcJ" /locus_tag="b1423" /gene_synonym="ECK1417; JW1419" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative metalloenzyme" /protein_id="NP_415940.1" /db_xref="GI:16129382" /db_xref="ASAP:ABE-0004750" /db_xref="UniProtKB/Swiss-Prot:P76097" /db_xref="EcoGene:EG13753" /db_xref="GeneID:945991" /translation="MANSITADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVL ENNPQLHEKMVNADELARLNVERHGAIRVGTAQELATLRRMFAIMGMYPVSYYDLSQA GVPVHSTAFRPIDDASLARNPFRVFTSLLRLELIENEILRQKAAEILRQRDIFTPRCR QLLEEYEQQGGFNETQAQEFVQEALETFRWHQSATVDEETYRALHNEHRLIADVVCFP GCHINHLTPRTLDIDRVQSMMPECGIEPKILIEGPPRREVPILLRQTSFKALEETVLF AGQKQGTHTARFGEIEQRGVALTPKGRQLYDDLLRNAGTGQDNLTHQMHLQETFRTFP DSEFLMRQQGLAWFRYRLTPSGEAHRQAIHPGDDPQPLIERGWVVAQPITYEDFLPVS AAGIFQSNLGNETQTRSHGNASREAFEQALGCPVLDEFQLYQEAEERSKRRCGLL" gene 1496856..1498511 /gene="opgD" /locus_tag="b1424" /gene_synonym="ECK1418; JW1420; mdoD; ydcG; yzzZ" /db_xref="EcoGene:EG12859" /db_xref="GeneID:945994" CDS 1496856..1498511 /gene="opgD" /locus_tag="b1424" /gene_synonym="ECK1418; JW1420; mdoD; ydcG; yzzZ" /function="putative structure; Not classified" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006970 - response to osmotic stress" /note="putative glycoprotein" /codon_start=1 /transl_table=11 /product="OPG biosynthetic periplasmic protein" /protein_id="NP_415941.5" /db_xref="GI:145698256" /db_xref="ASAP:ABE-0004754" /db_xref="UniProtKB/Swiss-Prot:P40120" /db_xref="EcoGene:EG12859" /db_xref="GeneID:945994" /translation="MDRRRFIKGSMAMAAVCGTSGIASLFSQAAFAADSDIADGQTQR FDFSILQSMAHDLAQTAWRGAPRPLPDTLATMTPQAYNSIQYDAEKSLWHNVENRQLD AQFFHMGMGFRRRVRMFSVDPATHLAREIHFRPELFKYNDAGVDTKQLEGQSDLGFAG FRVFKAPELARRDVVSFLGASYFRAVDDTYQYGLSARGLAIDTYTDSKEEFPDFTAFW FDTVKPGATTFTVYALLDSASITGAYKFTIHCEKSQVIMDVENHLYARKDIKQLGIAP MTSMFSCGTNERRMCDTIHPQIHDSDRLSMWRGNGEWICRPLNNPQKLQFNAYTDNNP KGFGLLQLDRDFSHYQDIMGWYNKRPSLWVEPRNKWGKGTIGLMEIPTTGETLDNIVC FWQPEKAVKAGDEFAFQYRLYWSAQPPVHCPLARVMATRTGMGGFSEGWAPGEHYPEK WARRFAVDFVGGDLKAAAPKGIEPVITLSSGEAKQIEILYIEPIDGYRIQFDWYPTSD STDPVDMRMYLRCQGDAISETWLYQYFPPAPDKRQYVDDRVMS" gene 1498651..1498875 /gene="ydcH" /locus_tag="b1426" /gene_synonym="ECK1419; JW5823" /db_xref="EcoGene:EG12865" /db_xref="GeneID:945997" CDS 1498651..1498875 /gene="ydcH" /locus_tag="b1426" /gene_synonym="ECK1419; JW5823" /codon_start=1 /transl_table=11 /product="DUF465 family protein" /protein_id="NP_415943.4" /db_xref="GI:90111271" /db_xref="ASAP:ABE-0004761" /db_xref="UniProtKB/Swiss-Prot:P0ACW6" /db_xref="EcoGene:EG12865" /db_xref="GeneID:945997" /translation="MFPEYRDLISRLKNENPRFMSLFDKHNKLDHEIARKEGSDGRGY NAEVVRMKKQKLQLKDEMLKILQQESVKEV" gene 1498938..1499477 /gene="rimL" /locus_tag="b1427" /gene_synonym="ECK1420; JW1423" /db_xref="EcoGene:EG10853" /db_xref="GeneID:945998" CDS 1498938..1499477 /gene="rimL" /locus_tag="b1427" /gene_synonym="ECK1420; JW1423" /EC_number="2.3.1.-" /function="enzyme; Ribosomes - maturation and modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006464 - protein modification process" /note="ribosomal-protein-serine acetyltransferase" /codon_start=1 /transl_table=11 /product="ribosomal-protein-L7/L12-serine acetyltransferase" /protein_id="NP_415944.1" /db_xref="GI:16129386" /db_xref="ASAP:ABE-0004763" /db_xref="UniProtKB/Swiss-Prot:P13857" /db_xref="EcoGene:EG10853" /db_xref="GeneID:945998" /translation="MTETIKVSESLELHAVAENHVKPLYQLICKNKTWLQQSLNWPQF VQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVISFNRIEPLNKTAEIGYWLDE SHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPQSNQVALRNGFILEGCLKQAE FLNDAYDDVNLYARIIDSQ" gene complement(1499469..1500449) /gene="ydcK" /locus_tag="b1428" /gene_synonym="ECK1421; JW1424" /db_xref="EcoGene:EG13754" /db_xref="GeneID:944932" CDS complement(1499469..1500449) /gene="ydcK" /locus_tag="b1428" /gene_synonym="ECK1421; JW1424" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_415945.1" /db_xref="GI:16129387" /db_xref="ASAP:ABE-0004765" /db_xref="UniProtKB/Swiss-Prot:P76100" /db_xref="EcoGene:EG13754" /db_xref="GeneID:944932" /translation="MRKYRLSEEQRAFSYQEDGTKKNVLLRQIIAISDFNDVIAGTAG GWIDRETVLAQEGNCWIYDQNAIAFGGAVISGNTRITGTSVLWGEVYATDNVWIDNSE ISQGAYISDSVTIHDSLVYGQCRIFGHALIDQHSMIVAAQGLTPDHQLLLQIYDRARV SASRIVHQAQIYGDAVVRYAFIEHRAEVFDFASIEGNEENNVWLCDCAKVYGHAQVKA GIEEDAIPTIHYSSQVAEYAIVEGNCVLKHHVLVGGNAVVRGGPILLDEHVVIQGESR ITGAVIIENHVELTDHAVVEAFDGDTVHVRGPKVINGEERITRTPLAGLL" gene 1500573..1501565 /gene="tehA" /locus_tag="b1429" /gene_synonym="ECK1422; JW1425" /db_xref="EcoGene:EG11883" /db_xref="GeneID:945852" CDS 1500573..1501565 /gene="tehA" /locus_tag="b1429" /gene_synonym="ECK1422; JW1425" /function="transport; Drug/analog sensitivity" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042493 - response to drug" /codon_start=1 /transl_table=11 /product="potassium-tellurite ethidium and proflavin transporter" /protein_id="NP_415946.1" /db_xref="GI:16129388" /db_xref="ASAP:ABE-0004770" /db_xref="UniProtKB/Swiss-Prot:P25396" /db_xref="EcoGene:EG11883" /db_xref="GeneID:945852" /translation="MQSDKVLNLPAGYFGIVLGTIGMGFAWRYASQVWQVSHWLGDGL VILAMIIWGLLTSAFIARLIRFPHSVLAEVRHPVLSSFVSLFPATTMLVAIGFVPWFR PLAVCLFSFGVVVQLAYAAWQTAGLWRGSHPEEATTPGLYLPTVANNFISAMACGALG YTDAGLVFLGAGVFSWLSLEPVILQRLRSSGELPTALRTSLGIQLAPALVACSAWLSV NGGEGDTLAKMLFGYGLLQLLFMLRLMPWYLSQPFNASFWSFSFGVSALATTGLHLGS GSDNGFFHTLAVPLFIFTNFIIAILLIRTFALLMQGKLLVRTERAVLMKAEDKE" gene 1501562..1502155 /gene="tehB" /locus_tag="b1430" /gene_synonym="ECK1423; JW1426" /db_xref="EcoGene:EG11884" /db_xref="GeneID:945979" CDS 1501562..1502155 /gene="tehB" /locus_tag="b1430" /gene_synonym="ECK1423; JW1426" /function="enzyme; Drug/analog sensitivity" /GO_process="GO:0042493 - response to drug" /codon_start=1 /transl_table=11 /product="tellurite, selenium methyltransferase, SAM-dependent; tellurite, selenium resistance protein" /protein_id="NP_415947.1" /db_xref="GI:16129389" /db_xref="ASAP:ABE-0004772" /db_xref="UniProtKB/Swiss-Prot:P25397" /db_xref="EcoGene:EG11884" /db_xref="GeneID:945979" /translation="MIIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRN SLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILST VVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYY EGWERVKYNEDVGELHRTDANGNRIKLRFATMLARKK" gene 1502457..1503125 /gene="ydcL" /locus_tag="b1431" /gene_synonym="ECK1424; JW1427" /db_xref="EcoGene:EG13755" /db_xref="GeneID:948203" CDS 1502457..1503125 /gene="ydcL" /locus_tag="b1431" /gene_synonym="ECK1424; JW1427" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_415948.1" /db_xref="GI:16129390" /db_xref="ASAP:ABE-0004775" /db_xref="UniProtKB/Swiss-Prot:P64451" /db_xref="EcoGene:EG13755" /db_xref="GeneID:948203" /translation="MRTTSFAKVAALCGLLALSGCASKITQPDKYSGFLNNYSDLKET TSATGKPVLRWVDPSFDQSKYDSIVWNPITYYPVPKPSTQVGQKVLDKILNYTNTEMK EAIAQRKPLVTTAGPRSLIFRGAITGVDTSKEGLQFYEVVPVALVVAGTQMATGHRTM DTRLYFEGELIDAATNKPVIKVVRQGEGKDLNNESTPMAFENIKQVIDDMATDATMFD VNKK" mobile_element 1503161..1504908 /mobile_element_type="insertion sequence:IS609" gene complement(1503218..1503649) /gene="insP" /locus_tag="b4578" /gene_synonym="ECK1425; JW5227; JW5961; orf1; orfA; tnpA; yncK" /pseudo /db_xref="EcoGene:EG14359" /db_xref="GeneID:4056028" CDS complement(1503218..1503649) /gene="insP" /locus_tag="b4578" /gene_synonym="ECK1425; JW5227; JW5961; orf1; orfA; tnpA; yncK" /note="pseudogene, IS609 transposase A;IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0285051" /db_xref="ASAP:ABE-0285052" /db_xref="ASAP:ABE-0285110" /db_xref="EcoGene:EG14359" /db_xref="GeneID:4056028" gene 1503717..1504865 /gene="insQ" /locus_tag="b1432" /gene_synonym="ECK1426; JW5228; orf2; orfB; tnpB; ydcM" /db_xref="EcoGene:EG13756" /db_xref="GeneID:944942" CDS 1503717..1504865 /gene="insQ" /locus_tag="b1432" /gene_synonym="ECK1426; JW5228; orf2; orfB; tnpB; ydcM" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS609 transposase B" /protein_id="NP_415949.2" /db_xref="GI:288551665" /db_xref="ASAP:ABE-0004778" /db_xref="UniProtKB/Swiss-Prot:P76102" /db_xref="EcoGene:EG13756" /db_xref="GeneID:944942" /translation="MRRFAGACRFVFNRALARQNENHEAGNKYIPYGKMASWLVEWKN ATETQWLKDSPSQPLQQSLKDLERAYKNFFRKRAAFPRFKKRGQNDAFRYPQGVKLDQ ENSRIFLPKLGWMRYRNSRQVTGVVKNVTVSQSCGKWYISIQTESEVSTPVHPSASMV GLDAGVAKLATLSDGTVFEPVNSFQKNQKKLARLQRQLSRKVKFSNNWQKQKRKIQRL HSCIANIRRDYLHKVTTAVSKNHAMIVIEDLKVSNMSKSAAGTVSQPGRNVRAKSGLN RSILDQGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKENRLSQSKFRCQ VCGYTANADVNGARNILAAGHAVLACGEMVQSGRPLKQEPTEMIQATA" gene complement(1504905..1506080) /gene="ydcO" /locus_tag="b1433" /gene_synonym="ECK1427; JW5229" /db_xref="EcoGene:EG13758" /db_xref="GeneID:947247" CDS complement(1504905..1506080) /gene="ydcO" /locus_tag="b1433" /gene_synonym="ECK1427; JW5229" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative membrane transport protein" /codon_start=1 /transl_table=11 /product="BenE family inner membrane putative transporter" /protein_id="NP_415950.4" /db_xref="GI:90111272" /db_xref="ASAP:ABE-0004780" /db_xref="UniProtKB/Swiss-Prot:P76103" /db_xref="EcoGene:EG13758" /db_xref="GeneID:947247" /translation="MRLFSIPPPTLLAGFLAVLIGYASSAAIIWQAAIVAGATTAQIS GWMTALGLAMGVSTLTLTLWYRVPVLTAWSTPGAALLVTGLQGLTLNEAIGVFIVTNA LIVLCGITGLFARLMRIIPHSLAAAMLAGILLRFGLQAFASLDGQFTLCGSMLLVWLA TKAVAPRYAVIAAMIIGIVIVIAQGDVVTTDVVFKPVLPTYITPDFSFAHSLSVALPL FLVTMASQNAPGIAAMKAAGYSAPVSPLIVFTGLLALVFSPFGVYSVGIAAITAAICQ SPEAHPDKDQRWLAAAVAGIFYLLAGLFGSAITGMMAALPVSWIQMLAGLALLSTIGG SLYQALHNERERDAAVVAFLVTASGLTLVGIGSAFWGLIAGGVCYVVLNLIADRNRY" gene 1506172..1506708 /gene="ydcN" /locus_tag="b1434" /gene_synonym="ECK1428; JW1430" /db_xref="EcoGene:EG13757" /db_xref="GeneID:946000" CDS 1506172..1506708 /gene="ydcN" /locus_tag="b1434" /gene_synonym="ECK1428; JW1430" /function="putative regulator; Not classified" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator" /protein_id="NP_415951.1" /db_xref="GI:16129393" /db_xref="ASAP:ABE-0004783" /db_xref="UniProtKB/Swiss-Prot:P77626" /db_xref="EcoGene:EG13757" /db_xref="GeneID:946000" /translation="MENLARFLSTTLKQLRQQRGWSLSRLAEATGVSKAMLGQIERNE SSPTVATLWKIATGLNVPFSTFISPPQSATPSVYDPQQQAMVITSLFPYDPQLCFEHF SIQMASGAISESTPHEKGVIEHVVVIDGQLDLCVDGEWQTLNCGEGVRFAADVTHIYR NGGEQTVHFHSLIHYPRS" gene 1506781..1508742 /gene="ydcP" /locus_tag="b1435" /gene_synonym="ECK1429; JW1431" /db_xref="EcoGene:EG13759" /db_xref="GeneID:945993" CDS 1506781..1508742 /gene="ydcP" /locus_tag="b1435" /gene_synonym="ECK1429; JW1431" /function="putative enzyme; Not classified" /note="putative protease" /codon_start=1 /transl_table=11 /product="putative peptidase" /protein_id="NP_415952.2" /db_xref="GI:90111273" /db_xref="ASAP:ABE-0004786" /db_xref="UniProtKB/Swiss-Prot:P76104" /db_xref="EcoGene:EG13759" /db_xref="GeneID:945993" /translation="MTVSSHRLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNA SNSLKDIAELVPFAHRYGAKIFVTLNTILHDDELEPAQRLITDLYQTGVDALIVQDMG ILELDIPPIELHASTQCDIRTVEKAKFLSDVGFTQIVLARELNLDQIRAIHQATDATI EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLS MKDNDQTANLGALIDAGVRSFKIEGRYKDMSYVKNITAHYRQMLDAIIEERGDLARAS SGRTEHFFVPSTEKTFHRGSTDYFVNARKGDIGAFDSPKFIGLPVGEVVKVAKDHLDV AVTEPLANGDGLNVLIKREVVGFRANTVEKTGENQYRVWPNEMPADLHKIRPHHPLNR NLDHNWQQALTKTSSERRVAVDIELGGWQEQLILTLTSEEGVSITHTLDGQFDEANNA EKAMNNLKDGLAKLGQTLYYARDVQINLPGALFVPNSLLNQFRREAADMLDAARLASY QRGSRKPVADPAPVYPQTHLSFLANVYNQKAREFYHRYGVQLIDAAYEAHEEKGEVPV MITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVNGDEVLTLKFDCRPCEMHVIGKIKN HILKMPLPGSVVASVSPDELLKTLPKRKG" repeat_region 1508791..1508823 /note="REP117 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1508834..1509064) /gene="yncJ" /locus_tag="b1436" /gene_synonym="ECK1430; JW1432" /db_xref="EcoGene:EG14300" /db_xref="GeneID:945990" CDS complement(1508834..1509064) /gene="yncJ" /locus_tag="b1436" /gene_synonym="ECK1430; JW1432" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_415953.1" /db_xref="GI:16129395" /db_xref="ASAP:ABE-0004789" /db_xref="UniProtKB/Swiss-Prot:P64459" /db_xref="EcoGene:EG14300" /db_xref="GeneID:945990" /translation="MFTKALSVVLLTCALFSGQLMAGHKGHEFVWVKNVDHQLRHEAD SDELRAVAEESAEGLREHFYWQKSRKPEAGQR" gene 1509286..1509462 /gene="hicA" /locus_tag="b4532" /gene_synonym="ECK1431; JW5230; yncN" /db_xref="EcoGene:EG14421" /db_xref="GeneID:945989" CDS 1509286..1509462 /gene="hicA" /locus_tag="b4532" /gene_synonym="ECK1431; JW5230; yncN" /codon_start=1 /transl_table=11 /product="mRNA interferase toxin of the HicAB toxin-antitoxin system" /protein_id="NP_415954.2" /db_xref="GI:94541092" /db_xref="ASAP:ABE-0285053" /db_xref="UniProtKB/Swiss-Prot:P76106" /db_xref="EcoGene:EG14421" /db_xref="GeneID:945989" /translation="MKQSEFRRWLESQGVDVANGSNHLKLRFHGRRSVMPRHPCDEIK EPLRKAILKQLGLS" gene 1509508..1509924 /gene="hicB" /locus_tag="b1438" /gene_synonym="ECK1432; JW1433; ydcQ" /db_xref="EcoGene:EG13760" /db_xref="GeneID:946001" CDS 1509508..1509924 /gene="hicB" /locus_tag="b1438" /gene_synonym="ECK1432; JW1433; ydcQ" /codon_start=1 /transl_table=11 /product="antitoxin for the HicAB toxin-antitoxin system" /protein_id="NP_415955.2" /db_xref="GI:145698257" /db_xref="ASAP:ABE-0004796" /db_xref="UniProtKB/Swiss-Prot:P67697" /db_xref="EcoGene:EG13760" /db_xref="GeneID:946001" /translation="MRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALL TAFDFYFEDNELIPLPSPLNSHDHFIEVPLSVASKVLLLNAFLQSEITQQELARRIGK PKQEITRLFNLHHATKIDAVQLAAKALGKELSLVMV" gene 1510003..1511409 /gene="ydcR" /locus_tag="b1439" /gene_synonym="ECK1433; JW1434" /db_xref="EcoGene:EG13761" /db_xref="GeneID:946004" CDS 1510003..1511409 /gene="ydcR" /locus_tag="b1439" /gene_synonym="ECK1433; JW1434" /function="putative regulator; Not classified" /GO_function="GO:0004009 - ATP-binding cassette (ABC) transporter activity" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent" /note="multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator and putative aminotransferase" /protein_id="NP_415956.1" /db_xref="GI:16129398" /db_xref="ASAP:ABE-0004800" /db_xref="UniProtKB/Swiss-Prot:P77730" /db_xref="EcoGene:EG13761" /db_xref="GeneID:946004" /translation="MKKYQQLAEQLREQIASGIWQPGDRLPSLRDQVALSGMSFMTVS HAYQLLESQGYIIARPQSGYYVAPQAIKMPKAPVIPVTRDEAVDINTYIFDMLQASRD PSVVPFASAFPDPRLFPLQQLNRSLAQVSKTATAMSVIENLPPGNAELRQAIARRYAL QGITISPDEIVITAGALEALNLSLQAVTEPGDWVIVENPCFYGALQALERLRLKALSV ATDVKEGIDLQALELALQEYPVKACWLMTNSQNPLGFTLTPQKKAQLVALLNQYNVTL IEDDVYSELYFGREKPLPAKAWDRHDGVLHCSSFSKCLVPGFRIGWVAAGKHARKIQR LQLMSTLSTSSPMQLALVDYLSTRRYDAHLRRLRRQLAERKQRAWQALLRYLPAEVKI HHNDSGYFLWLELPEPLDAGELSLAALTHHISIAPGKMFSTGENWSRFFRFNTAWQWG EREEQAVKQLGKLIQERL" gene 1511654..1512799 /gene="ydcS" /locus_tag="b1440" /gene_synonym="ECK1434; JW1435" /db_xref="EcoGene:EG13762" /db_xref="GeneID:946005" CDS 1511654..1512799 /gene="ydcS" /locus_tag="b1440" /gene_synonym="ECK1434; JW1435" /function="enzyme; Not classified" /GO_component="GO:0042597 - periplasmic space" /note="periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="putative ABC transporter periplasmic binding protein" /protein_id="NP_415957.1" /db_xref="GI:16129399" /db_xref="ASAP:ABE-0004803" /db_xref="UniProtKB/Swiss-Prot:P76108" /db_xref="EcoGene:EG13762" /db_xref="GeneID:946005" /translation="MSKTFARSSLCALSMTIMTAHAAEPPTNLDKPEGRLDIIAWPGY IERGQTDKQYDWVTQFEKETGCAVNVKTAATSDEMVSLMTKGGYDLVTASGDASLRLI MGKRVQPINTALIPNWKTLDPRVVKGDWFNVGGKVYGTPYQWGPNLLMYNTKTFPTPP DSWQVVFVEQNLPDGKSNKGRVQAYDGPIYIADAALFVKATQPQLGISDPYQLTEEQY QAVLKVLRAQHSLIHRYWHDTTVQMSDFKNEGVVASSAWPYQANALKAEGQPVATVFP KEGVTGWADTTMLHSEAKHPVCAYKWMNWSLTPKVQGDVAAWFGSLPVVPEGCKASPL LGEKGCETNGFNYFDKIAFWKTPIAEGGKFVPYSRWTQDYIAIMGGR" gene 1512817..1513830 /gene="ydcT" /locus_tag="b1441" /gene_synonym="ECK1435; JW1436" /db_xref="EcoGene:EG13763" /db_xref="GeneID:946007" CDS 1512817..1513830 /gene="ydcT" /locus_tag="b1441" /gene_synonym="ECK1435; JW1436" /function="putative transport; Not classified" /GO_component="GO:0005737 - cytoplasm" /note="ATP-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="putative ABC transporter ATPase" /protein_id="NP_415958.1" /db_xref="GI:16129400" /db_xref="ASAP:ABE-0004805" /db_xref="UniProtKB/Swiss-Prot:P77795" /db_xref="EcoGene:EG13763" /db_xref="GeneID:946007" /translation="MTYAVEFDNVSRLYGDVRAVDGVSIAIKDGEFFSMLGPSGSGKT TCLRLIAGFEQLSGGAISIFGKPASNLPPWERDVNTVFQDYALFPHMSILDNVAYGLM VKGVNKKQRHAMAQEALEKVALGFVHQRKPSQLSGGQRQRVAIARALVNEPRVLLLDE PLGALDLKLREQMQLELKKLQQSLGITFIFVTHDQGEALSMSDRVAVFNNGRIEQVDS PRDLYMRPRTPFVAGFVGTSNVFDGLMAEKLCGMTGSFALRPEHIRLNTPGELQANGT IQAVQYQGAATRFELKLNGGEKLLVSQANMTGEELPATLTPGQQVMVSWSRDVMVPLV EER" gene 1513831..1514772 /gene="ydcU" /locus_tag="b1442" /gene_synonym="ECK1436; JW1437" /db_xref="EcoGene:EG13764" /db_xref="GeneID:945976" CDS 1513831..1514772 /gene="ydcU" /locus_tag="b1442" /gene_synonym="ECK1436; JW1437" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="putative ABC transporter permease" /protein_id="NP_415959.1" /db_xref="GI:16129401" /db_xref="ASAP:ABE-0004807" /db_xref="UniProtKB/Swiss-Prot:P77156" /db_xref="EcoGene:EG13764" /db_xref="GeneID:945976" /translation="MAMNVLQSPSRPGLGKVSGFFWHNPGLGLFLLLLGPLMWFGIVY FGSLLTLLWQGFYTFDDFTMSVTPELTLANIRALFNPANYDIILRTLTMAVAVTIASA ILAFPMAWYMARYTSGKMKAFFYIAVMLPMWASYIVKAYAWTLLLAKDGVAQWFLQHL GLEPLLTAFLTLPAVGGNTLSTSGLGRFLVFLYIWLPFMILPVQAALERLPPSLLQAS ADLGARPRQTFRYVVLPLAIPGIAAGSIFTFSLTLGDFIVPQLVGPPGYFIGNMVYSQ QGAIGNMPMAAAFTLVPIILIALYLAFVKRLGAFDAL" gene 1514762..1515556 /gene="ydcV" /locus_tag="b1443" /gene_synonym="ECK1437; JW1438" /db_xref="EcoGene:EG13765" /db_xref="GeneID:945903" CDS 1514762..1515556 /gene="ydcV" /locus_tag="b1443" /gene_synonym="ECK1437; JW1438" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="putative ABC transporter permease" /protein_id="NP_415960.1" /db_xref="GI:16129402" /db_xref="ASAP:ABE-0004809" /db_xref="UniProtKB/Swiss-Prot:P0AFR9" /db_xref="EcoGene:EG13765" /db_xref="GeneID:945903" /translation="MHSERAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPP QGLTLRWFSVAAQRSDILDAVTLSLKVAALATLIALVLGTLAAAALWRRDFFGKNAIS LLLLLPIALPGIVTGLALLTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTS WSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTL PLWLLNQLGRPRDVPVTNVVALLVMLVTTLPILGAWWLTREGDNGQ" gene 1515578..1517002 /gene="patD" /locus_tag="b1444" /gene_synonym="ECK1438; JW1439; prr; ydcW" /db_xref="EcoGene:EG13766" /db_xref="GeneID:945876" CDS 1515578..1517002 /gene="patD" /locus_tag="b1444" /gene_synonym="ECK1438; JW1439; prr; ydcW" /function="putative enzyme; Not classified" /note="putative aldehyde dehydrogenase" /codon_start=1 /transl_table=11 /product="gamma-aminobutyraldehyde dehydrogenase" /protein_id="NP_415961.1" /db_xref="GI:16129403" /db_xref="ASAP:ABE-0004813" /db_xref="UniProtKB/Swiss-Prot:P77674" /db_xref="EcoGene:EG13766" /db_xref="GeneID:945876" /translation="MQHKLLINGELVSGEGEKQPVYNPATGDVLLEIAEASAEQVDAA VRAADAAFAEWGQTTPKVRAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIP AIVDVFRFFAGAARCLNGLAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLA PALAAGNCVVLKPSEITPLTALKLAELAKDIFPAGVINILFGRGKTVGDPLTGHPKVR MVSLTGSIATGEHIISHTASSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNA GQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVGKA VEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNE EQVVNWANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKLS GYGKDMSLYGLEDYTVVRHVMVKH" gene complement(1517099..1517194) /gene="yncL" /locus_tag="b4598" /gene_synonym="ECK4408" /db_xref="EcoGene:EG14394" /db_xref="GeneID:5061503" CDS complement(1517099..1517194) /gene="yncL" /locus_tag="b4598" /gene_synonym="ECK4408" /codon_start=1 /transl_table=11 /product="stress-induced small inner membrane enterobacterial protein" /protein_id="YP_001165318.1" /db_xref="GI:145698258" /db_xref="UniProtKB/Swiss-Prot:A5A615" /db_xref="EcoGene:EG14394" /db_xref="GeneID:5061503" /translation="MNVSSRTVVLINFFAAVGLFTLISMRFGWFI" gene 1517389..1517562 /gene="ydcX" /locus_tag="b1445" /gene_synonym="ECK1439; JW5232" /db_xref="EcoGene:EG13767" /db_xref="GeneID:945936" CDS 1517389..1517562 /gene="ydcX" /locus_tag="b1445" /gene_synonym="ECK1439; JW5232" /codon_start=1 /transl_table=11 /product="DUF2566 family protein" /protein_id="NP_415962.2" /db_xref="GI:90111274" /db_xref="ASAP:ABE-0004818" /db_xref="UniProtKB/Swiss-Prot:P64453" /db_xref="EcoGene:EG13767" /db_xref="GeneID:945936" /translation="MSLYQHMLVFYAVMAAIAFLITWFLSHDKKRIRFLSAFLVGATW PMSFPVALLFSLF" gene 1517648..1517881 /gene="ydcY" /locus_tag="b1446" /gene_synonym="ECK1440; JW1441" /db_xref="EcoGene:EG13768" /db_xref="GeneID:945916" CDS 1517648..1517881 /gene="ydcY" /locus_tag="b1446" /gene_synonym="ECK1440; JW1441" /codon_start=1 /transl_table=11 /product="DUF2526 family protein" /protein_id="NP_415963.1" /db_xref="GI:16129405" /db_xref="ASAP:ABE-0004821" /db_xref="UniProtKB/Swiss-Prot:P64455" /db_xref="EcoGene:EG13768" /db_xref="GeneID:945916" /translation="MSHLDEVIARVDAAIEESVIAHMNELLIALSDDAELSREDRYTQ QQRLRTAIAHHGRKHKEDMEARHEQLTKGGTIL" gene complement(1517882..1518331) /gene="ydcZ" /locus_tag="b1447" /gene_synonym="ECK1441; JW1442" /db_xref="EcoGene:EG13769" /db_xref="GeneID:946008" CDS complement(1517882..1518331) /gene="ydcZ" /locus_tag="b1447" /gene_synonym="ECK1441; JW1442" /codon_start=1 /transl_table=11 /product="DUF606 family inner membrane protein" /protein_id="NP_415964.1" /db_xref="GI:16129406" /db_xref="ASAP:ABE-0004823" /db_xref="UniProtKB/Swiss-Prot:P76111" /db_xref="EcoGene:EG13769" /db_xref="GeneID:946008" /translation="MNQSLTLAFLIAAGIGLVVQNTLMVRITQTSSTILIAMLLNSLV GIVLFVSILWFKQGMAGFGELVSSVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAV LVASQLIGGLMLDIFRSHGVPLRALFGPICGAILLVVGAWLVARRSF" gene complement(1518328..1518846) /gene="mnaT" /locus_tag="b1448" /gene_synonym="ECK1442; JW5233; yncA" /db_xref="EcoGene:EG13770" /db_xref="GeneID:946010" CDS complement(1518328..1518846) /gene="mnaT" /locus_tag="b1448" /gene_synonym="ECK1442; JW5233; yncA" /function="enzyme; Proteins - translation and modification" /GO_process="GO:0042493 - response to drug" /codon_start=1 /transl_table=11 /product="methionine N-acyltransferase; L-amino acid N-acyltransferase" /protein_id="NP_415965.1" /db_xref="GI:16129407" /db_xref="ASAP:ABE-0004827" /db_xref="UniProtKB/Swiss-Prot:P76112" /db_xref="EcoGene:EG13770" /db_xref="GeneID:946010" /translation="MSIRFARKADCAAIAEIYNHAVLYTAAIWNDQTVDADNRIAWFE ARTLAGYPVLVSEENGVVTGYASFGDWRSFDGFRHTVEHSVYVHPDHQGKGLGRKLLS RLIDEARDCGKHVMVAGIESQNQASLHLHQSLGFVVTAQMPQVGTKFGRWLDLTFMQL QLDERTEPDAIG" gene 1519027..1520064 /gene="curA" /locus_tag="b1449" /gene_synonym="ECK1443; JW5907; yncB" /db_xref="EcoGene:EG13772" /db_xref="GeneID:946012" CDS 1519027..1520064 /gene="curA" /locus_tag="b1449" /gene_synonym="ECK1443; JW5907; yncB" /function="enzyme; Not classified" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="curcumin/dihydrocurcumin reductase, NADPH-dependent" /protein_id="NP_415966.6" /db_xref="GI:226524714" /db_xref="ASAP:ABE-0004834" /db_xref="UniProtKB/Swiss-Prot:P76113" /db_xref="EcoGene:EG13772" /db_xref="GeneID:946012" /translation="MGQQKQRNRRWVLASRPHGAPVPENFRLEEDDVATPGEGQVLLR TVYLSLDPYMRGRMSDEPSYSPPVDIGGVMVGGTVSRVVESNHPDYQSGDWVLGYSGW QDYDISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATG PVGATVGQIGKLKGCRVVGVAGGAEKCRHATEVLGFDVCLDHHADDFAEQLAKACPKG IDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKR IRLQGFIIAQDYGHRIHEFQREMGQWVKEDKIHYREEITDGLENAPQTFIGLLKGKNF GKVVIRVAGDD" gene 1520262..1520927 /gene="mcbR" /locus_tag="b1450" /gene_synonym="ECK1444; JW1445; yncC" /db_xref="EcoGene:EG13773" /db_xref="GeneID:946014" CDS 1520262..1520927 /gene="mcbR" /locus_tag="b1450" /gene_synonym="ECK1444; JW1445; yncC" /function="putative regulator; Not classified" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent; GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="colanic acid and biofilm gene transcriptional regulator, MqsR-controlled" /protein_id="NP_415967.2" /db_xref="GI:90111276" /db_xref="ASAP:ABE-0004837" /db_xref="UniProtKB/Swiss-Prot:P76114" /db_xref="EcoGene:EG13773" /db_xref="GeneID:946014" /translation="MPGTGKMKHVSLTLQVENDLKHQLSIGALKPGARLITKNLAEQL GMSITPVREALLRLVSVNALSVAPAQAFTVPEVGKRQLDEINRIRYELELMAVALAVE NLTPQDLAELQELLEKLQQAQEKGDMEQIINVNRLFRLAIYHRSNMPILCEMIEQLWV RMGPGLHYLYEAINPAELREHIENYHLLLAALKAKDKEGCRHCLAEIMQQNIAILYQQ YNR" gene complement(1520963..1523065) /gene="yncD" /locus_tag="b1451" /gene_synonym="ECK1445; JW1446" /db_xref="EcoGene:EG13774" /db_xref="GeneID:946015" CDS complement(1520963..1523065) /gene="yncD" /locus_tag="b1451" /gene_synonym="ECK1445; JW1446" /function="putative transport; Not classified" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative iron outer membrane transporter" /protein_id="NP_415968.1" /db_xref="GI:16129410" /db_xref="ASAP:ABE-0004839" /db_xref="UniProtKB/Swiss-Prot:P76115" /db_xref="EcoGene:EG13774" /db_xref="GeneID:946015" /translation="MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTP AAVSVVDGEEMRLATPRINLSESLTGVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIR GIRLYVDGIPATMPDGQGQTSNIDLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQ QPPTIEASSYYGSFGSWRYGLKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQK NLANAKLGVRIDEASKLSLIFNSVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTI KQTQAGLRYERSLSSRDDMSVMMYAGERETTQYQSIPMAPQLNPSHAGGVITLQRHYQ GIDSRWTHRGELGVPVTFTTGLNYENMSENRKGYNNFRLNSGMPEYGQKGELRRDERN LMWNIDPYLQTQWQLSEKLSLDAGVRYSSVWFDSNDHYVTPGNGDDSGDASYHKWLPA GSLKYAMTDAWNIYLAAGRGFETPTINELSYRADGQSGMNLGLKPSTNDTIEIGSKTR IGDGLLSLALFQTDTDDEIVVDSSSGGRTTYKNAGKTRRQGAELAWDQRFAGDFRVNA SWTWLDATYRSNVCNEQDCNGNRMPGIARNMGFASIGYVPEDGWYAGTEARYMGDIMA DDENTAKAPSYTLVGLFTGYKYNYHNLTVDLFGRVDNLFDKEYVGSVIVNESNGRYYE PSPGRNYGVGMNIAWRFE" gene 1523307..1524368 /gene="yncE" /locus_tag="b1452" /gene_synonym="ECK1446; JW1447" /db_xref="EcoGene:EG13775" /db_xref="GeneID:946006" CDS 1523307..1524368 /gene="yncE" /locus_tag="b1452" /gene_synonym="ECK1446; JW1447" /function="putative factor; Not classified" /note="putative receptor" /codon_start=1 /transl_table=11 /product="ATP-binding protein, periplasmic, function unknown" /protein_id="NP_415969.1" /db_xref="GI:16129411" /db_xref="ASAP:ABE-0004843" /db_xref="UniProtKB/Swiss-Prot:P76116" /db_xref="EcoGene:EG13775" /db_xref="GeneID:946006" /translation="MHLRHLFSSRLRGSLLLGSLLVVSSFSTQAAEEMLRKAVGKGAY EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQT LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI GKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKI LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLA VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ KSTKQQEATQPDDVIRIAL" gene complement(1524481..1525980) /gene="ansP" /locus_tag="b1453" /gene_synonym="ECK1447; JW5234; yncF" /db_xref="EcoGene:EG13776" /db_xref="GeneID:946019" CDS complement(1524481..1525980) /gene="ansP" /locus_tag="b1453" /gene_synonym="ECK1447; JW5234; yncF" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006529 - asparagine biosynthetic process" /note="L-asparagine permease" /codon_start=1 /transl_table=11 /product="L-asparagine transporter" /protein_id="NP_415970.4" /db_xref="GI:90111277" /db_xref="ASAP:ABE-0004845" /db_xref="UniProtKB/Swiss-Prot:P77610" /db_xref="EcoGene:EG13776" /db_xref="GeneID:946019" /translation="MSKHDTDTSDQHAAKRRWLNAHEEGYHKAMGNRQVQMIAIGGAI GTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFL GEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNM IGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHG LLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLV MLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMA MGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIAS WAFIIVCQMRLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYPNGTYT IAALPIIGILLVIGWFGVRKRVAEIHSTAPVVEEDEEKQEIVFKPETAS" gene 1526247..1526864 /gene="yncG" /locus_tag="b1454" /gene_synonym="ECK1448; JW1449" /db_xref="EcoGene:EG13777" /db_xref="GeneID:946023" CDS 1526247..1526864 /gene="yncG" /locus_tag="b1454" /gene_synonym="ECK1448; JW1449" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="glutathione S-transferase homolog" /protein_id="NP_415971.1" /db_xref="GI:16129413" /db_xref="ASAP:ABE-0004851" /db_xref="UniProtKB/Swiss-Prot:P76117" /db_xref="EcoGene:EG13777" /db_xref="GeneID:946023" /translation="MIKVYGVPGWGSTISELMLTLADIPYQFVDVSGFDHEGASRELL KTLNPLCQVPTLALENDEIMTETAAIALMVLDRRPDLAPPVGRAERQLFQRLLVWLVA NVYPTFTFADYPERWAPDAPEQLKKNVIEYRKSLYIWLNSQLTAEPYAFGEQLTLVDC YLCTMRTWGPGHEWFQDNATNISAIADAVCQLPKLQEVLKRNEII" gene 1526940..1527152 /gene="yncH" /locus_tag="b1455" /gene_synonym="ECK1449; JW5235" /db_xref="EcoGene:EG13778" /db_xref="GeneID:946024" CDS 1526940..1527152 /gene="yncH" /locus_tag="b1455" /gene_synonym="ECK1449; JW5235" /codon_start=1 /transl_table=11 /product="IPR020099 family protein" /protein_id="NP_415972.1" /db_xref="GI:16129414" /db_xref="ASAP:ABE-0004855" /db_xref="UniProtKB/Swiss-Prot:P76118" /db_xref="EcoGene:EG13778" /db_xref="GeneID:946024" /translation="MVCFLIYITLLFIQRVYFISSEKKLTIHIVQMFQLLSQAFYNLK MFLMMDMLGVGDAININTNKNIRQVC" gene 1527902..1529938 /gene="rhsE" /locus_tag="b1456" /gene_synonym="ECK1450; JW1451" /pseudo /db_xref="EcoGene:EG10010" /db_xref="GeneID:946026" CDS 1527902..1529938 /gene="rhsE" /locus_tag="b1456" /gene_synonym="ECK1450; JW1451" /note="pseudogene, Rhs family" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0004858" /db_xref="UniProtKB/Swiss-Prot:P24211" /db_xref="EcoGene:EG10010" /db_xref="GeneID:946026" gene 1529922..1530404 /gene="ydcD" /locus_tag="b1457" /gene_synonym="ECK1451; JW1452" /db_xref="EcoGene:EG11760" /db_xref="GeneID:946958" CDS 1529922..1530404 /gene="ydcD" /locus_tag="b1457" /gene_synonym="ECK1451; JW1452" /codon_start=1 /transl_table=11 /product="putative immunity protein for RhsE" /protein_id="NP_415974.1" /db_xref="GI:16129416" /db_xref="ASAP:ABE-0004861" /db_xref="UniProtKB/Swiss-Prot:P31991" /db_xref="EcoGene:EG11760" /db_xref="GeneID:946958" /translation="MLQIIRGKLVIFLITLCLFVVYLGFDNNSNSDIVFYGHKTPKSV EIYLSEKNIIYKIINDQKISRGNGHFISIMVNNYRTHCGVVDINLNFFNDILYSVRLK NISKLENMEFCATKQRVYFSDKNKKASYKIINYGDYYDVDYYDNNLKNEVFDWIGKWS " gene 1530586..1531639 /gene="yncI" /locus_tag="b1459" /gene_synonym="ECK1452; JW1453; yncM" /pseudo /db_xref="EcoGene:EG14258" /db_xref="GeneID:945121" CDS join(1530586..1531323,1531325..1531639) /gene="yncI" /locus_tag="b1459" /gene_synonym="ECK1452; JW1453; yncM" /note="pseudogene" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0004865" /db_xref="ASAP:ABE-0004868" /db_xref="UniProtKB/Swiss-Prot:P76119" /db_xref="EcoGene:EG14258" /db_xref="GeneID:945121" gene 1531816..1532952 /gene="ydcC" /locus_tag="b1460" /gene_synonym="ECK1454; JW1455" /db_xref="EcoGene:EG11526" /db_xref="GeneID:947435" CDS 1531816..1532952 /gene="ydcC" /locus_tag="b1460" /gene_synonym="ECK1454; JW1455" /function="putative enzyme; Not classified" /note="H repeat-associated protein (ORF-H)" /codon_start=1 /transl_table=11 /product="H repeat-associated putative transposase" /protein_id="NP_415977.1" /db_xref="GI:16129419" /db_xref="ASAP:ABE-0004872" /db_xref="UniProtKB/Swiss-Prot:P28917" /db_xref="EcoGene:EG11526" /db_xref="GeneID:947435" /translation="MELKKLMGHISIIPDYRQAWKMEHKLSDILLLTICAVISGAEGW EDIEDFGETHPDFLKQYGDFENGIPVHDTIARVVSCISPAKFHECFINWMRDCHSSDD KDVIAIDGKTLRHSYDKSRRRGAIHVISAFSTMHSLVIGQIKTDEKSNEITAIPELLN MLDIKGKIITTDAMGCQKDIAEKIQKQGGDYLFAVKGNQGRLNKAFEEKFPLKELNNP AHDSYAMSEKSHGREEIRLHIVCDVPDELIDFTFEWKGLKKLCVAVSFRSIIAEQKKE LEMTVRYYISSADLTAEKFATAIRNHWHVENKLHWRLDVVMNEDDCKIRRGNAAELFS GIRHIAINILTNDKVFKAGLRRKMRKAAMDRNYLASVLTGSGLS" gene 1533052..1533285 /gene="pptA" /locus_tag="b1461" /gene_synonym="ECK1455; JW1456; ydcE" /db_xref="EcoGene:EG11761" /db_xref="GeneID:945731" CDS 1533052..1533285 /gene="pptA" /locus_tag="b1461" /gene_synonym="ECK1455; JW1456; ydcE" /EC_number="5.3.2.-" /codon_start=1 /transl_table=11 /product="4-oxalocrotonate tautomerase" /protein_id="NP_415978.1" /db_xref="GI:16129420" /db_xref="ASAP:ABE-0004875" /db_xref="UniProtKB/Swiss-Prot:P31992" /db_xref="EcoGene:EG11761" /db_xref="GeneID:945731" /translation="MPHIDIKCFPRELDEQQKAALAADITDVIIRHLNSKDSSISIAL QQIQPESWQAIWDAEIAPQMEALIKKPGYSMNA" gene complement(1533282..1533851) /gene="yddH" /locus_tag="b1462" /gene_synonym="ECK1456; JW1457" /db_xref="EcoGene:EG13779" /db_xref="GeneID:946192" CDS complement(1533282..1533851) /gene="yddH" /locus_tag="b1462" /gene_synonym="ECK1456; JW1457" /codon_start=1 /transl_table=11 /product="flavin reductase like-protein" /protein_id="NP_415979.2" /db_xref="GI:90111278" /db_xref="ASAP:ABE-0004877" /db_xref="UniProtKB/Swiss-Prot:P76121" /db_xref="EcoGene:EG13779" /db_xref="GeneID:946192" /translation="MSRFIPIELHHASRLLNHGPTVLITSFDEQSQRRNIMAAAWSMP VEFEPPRVAIVVDKSTWTRELIEHNGKFGIVIPGVAATNWTWAVGSVSGRDEDKFNCY GIPVVRGPVFGLPLVEEKCLAWMECRLLPATSAQEEYDTLFGEVVSAAADARVFVEGR WQFDDDKLNTLHHLGAGTFVTSGKRVTAG" gene 1534024..1534869 /gene="nhoA" /locus_tag="b1463" /gene_synonym="ECK1457; JW1458; yddI" /db_xref="EcoGene:EG13780" /db_xref="GeneID:947251" CDS 1534024..1534869 /gene="nhoA" /locus_tag="b1463" /gene_synonym="ECK1457; JW1458; yddI" /EC_number="2.3.1.118" /GO_process="GO:0008152 - metabolic process" /codon_start=1 /transl_table=11 /product="N-hydroxyarylamine O-acetyltransferase" /protein_id="NP_415980.1" /db_xref="GI:16129422" /db_xref="ASAP:ABE-0004882" /db_xref="UniProtKB/Swiss-Prot:P77567" /db_xref="EcoGene:EG13780" /db_xref="GeneID:947251" /translation="MTPILNHYFARINWSGAAAVNIDTLRALHLKHNCTIPFENLDVL LPREIQLDNQSPEEKLVIARRGGYCFEQNGVFERVLRELGFNVRSLLGRVVLSNPPAL PPRTHRLLLVELEEEKWIADVGFGGQTLTAPIRLVSDLVQTTPHGEYRLLQEGDDWVL QFNHHQHWQSMYRFDLCEQQQSDYVMGNFWSAHWPQSHFRHHLLMCRHLPDGGKLTLT NFHFTHYENGHAVEQRNLPDVASLYAVMQEQFGLGVDDAKHGFTVDELALVMAAFDTH PEAGK" repeat_region 1534883..1534957 /note="REP118 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(1534965..1535858) /gene="yddE" /locus_tag="b1464" /gene_synonym="ECK1458; JW1459" /db_xref="EcoGene:EG11825" /db_xref="GeneID:944782" CDS complement(1534965..1535858) /gene="yddE" /locus_tag="b1464" /gene_synonym="ECK1458; JW1459" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="PhzC-PhzF family protein" /protein_id="NP_415981.1" /db_xref="GI:16129423" /db_xref="ASAP:ABE-0004886" /db_xref="UniProtKB/Swiss-Prot:P37757" /db_xref="EcoGene:EG11825" /db_xref="GeneID:944782" /translation="MKPQVYHVDAFTSQPFRGNSAGVVFPADNLSEAQMQLIARELGH SETAFLLHSDDSDVRIRYFTPTVEVPICGHATVAAHYVRAKVLGLGNCTIWQTSLAGK HRVTIEKHNDDYRISLEQGTPGFEPPLEGETRAAIINALHLTEDDILPGLPIQVATTG HSKVMIPLKPEVDIDALSPDLNALTAISKKIGCNGFFPFQIRPGKNETDGRMFSPAIG IVEDPVTGNANGPMGAWLVHHNVLPHDGNVLRVKGHQGRALGRDGMIEVTVTIRDNQP EKVTISGTAVILFHAEWAIEL" gene complement(1535937..1536617) /gene="narV" /locus_tag="b1465" /gene_synonym="chlZ; ECK1459; JW1460" /db_xref="EcoGene:EG10644" /db_xref="GeneID:946029" CDS complement(1535937..1536617) /gene="narV" /locus_tag="b1465" /gene_synonym="chlZ; ECK1459; JW1460" /EC_number="1.7.99.4" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration" /codon_start=1 /transl_table=11 /product="nitrate reductase 2 (NRZ), gamma subunit" /protein_id="NP_415982.1" /db_xref="GI:16129424" /db_xref="ASAP:ABE-0004889" /db_xref="UniProtKB/Swiss-Prot:P0AF32" /db_xref="EcoGene:EG10644" /db_xref="GeneID:946029" /translation="MIQYLNVFFYDIYPYICATVFFLGSWLRYDYGQYTWRASSSQML DKRGMVIWSNLFHIGILGIFFGHLFGMLTPHWMYAWFLPVAAKQLMAMVLGGICGVLT LIGGAGLLWRRLTNQRVRATSTTPDIIIMSILLIQCLLGLSTIPFSAQYPDGSEMMKL VGWAQSIVTFRGGSSEMLNGVAFVFRLHLVLGMTIFLLFPFTRLVHVWSAPFEYFTRR YQIVRSRR" gene complement(1536614..1537309) /gene="narW" /locus_tag="b1466" /gene_synonym="chlZ; ECK1460; JW1461" /db_xref="EcoGene:EG10645" /db_xref="GeneID:946032" CDS complement(1536614..1537309) /gene="narW" /locus_tag="b1466" /gene_synonym="chlZ; ECK1460; JW1461" /EC_number="1.7.99.4" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_process="GO:0009061 - anaerobic respiration; GO:0006457 - protein folding" /codon_start=1 /transl_table=11 /product="nitrate reductase 2 (NRZ), delta subunit (assembly subunit)" /protein_id="NP_415983.1" /db_xref="GI:16129425" /db_xref="ASAP:ABE-0004892" /db_xref="UniProtKB/Swiss-Prot:P19317" /db_xref="EcoGene:EG10645" /db_xref="GeneID:946032" /translation="MQILKVIGLLMEYPDELLWECKEDALALIRRDAPMLTDFTHNLL NAPLLDKQAEWCEVFDRGRTTSLLLFEHVHAESRDRGQAMVDLLAEYEKVGLQLDCRE LPDYLPLYLEYLSVLPDDQAKEGLLNVAPILALLGGRLKQREAPWYALFDALLQLAGS SLSSDSVTKQVNSEERDDTRQALDAVWEEEQVKFIEDNATACDSSPLNQYQRRFSQDV APQYVDISAGGGK" gene complement(1537309..1538853) /gene="narY" /locus_tag="b1467" /gene_synonym="chlZ; ECK1461; JW1462" /db_xref="EcoGene:EG10647" /db_xref="GeneID:946034" CDS complement(1537309..1538853) /gene="narY" /locus_tag="b1467" /gene_synonym="chlZ; ECK1461; JW1462" /EC_number="1.7.99.4" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /experiment="N-terminus verified by Edman degradation: PMID 2233673" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration" /codon_start=1 /transl_table=11 /product="nitrate reductase 2 (NRZ), beta subunit" /protein_id="NP_415984.1" /db_xref="GI:16129426" /db_xref="ASAP:ABE-0004896" /db_xref="UniProtKB/Swiss-Prot:P19318" /db_xref="EcoGene:EG10647" /db_xref="GeneID:946034" /translation="MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTGREGMEYAWFNNV ETKPGIGYPKNWEDQEEWQGGWVRDVNGKIRPRLGNKMGVITKIFANPVVPQIDDYYE PFTFDYEHLHSAPEGKHIPTARPRSLIDGKRMDKVIWGPNWEELLGGEFEKRARDRNF EAMQKEMYGQFENTFMMYLPRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRG WRLCISGCPYKKIYFNWKSGKSEKCIFCYPRIESGQPTVCSETCVGRIRYLGVLLYDA DRIEEAASTEREVDLYERQCEVFLDPHDPSVIEEALKQGIPQNVIDAAQRSPVYKMAM DWKLALPLHPEYRTLPMVWYVPPLSPIQSYADAGGLPKSEGVLPAIESLRIPVQYLAN MLSAGDTGPVLRALKRMMAMRHYMRSQTVEGVTDTRAIDEVGLSVAQVEEMYRYLAIA NYEDRFVIPTSHREMAGDAFAERNGCGFTFGDGCHGSDSKFNLFNSSRIDAINITEVR DKAEGE" gene complement(1538850..1542590) /gene="narZ" /locus_tag="b1468" /gene_synonym="chlZ; ECK1462; JW1463" /db_xref="EcoGene:EG10648" /db_xref="GeneID:945999" CDS complement(1538850..1542590) /gene="narZ" /locus_tag="b1468" /gene_synonym="chlZ; ECK1462; JW1463" /EC_number="1.7.99.4" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration" /codon_start=1 /transl_table=11 /product="nitrate reductase 2 (NRZ), alpha subunit" /protein_id="NP_415985.1" /db_xref="GI:16129427" /db_xref="ASAP:ABE-0004898" /db_xref="UniProtKB/Swiss-Prot:P19319" /db_xref="EcoGene:EG10648" /db_xref="GeneID:945999" /translation="MSKLLDRFRYFKQKGETFADGHGQVMHSNRDWEDSYRQRWQFDK IVRSTHGVNCTGSCSWKIYVKNGLVTWEIQQTDYPRTRPDLPNHEPRGCPRGASYSWY LYSANRLKYPLIRKRLIELWREALKQHSDPVLAWASIMNDPQKCLSYKQVRGRGGFIR SNWQELNQLIAAANVWTIKTYGPDRVAGFSPIPAMSMVSYAAGTRYLSLLGGTCLSFY DWYCDLPPASPMTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGT KTIAITPDYSEVAKLCDQWLAPKQGTDSALAMAMGHVILKEFHLDNPSDYFINYCRRY SDMPMLVMLEPRDDGSYVPGRMIRASDLVDGLGESNNPQWKTVAVNTAGELVVPNGSI GFRWGEKGKWNLESIAAGTETELSLTLLGQHDAVAGVAFPYFGGIENPHFRSVKHNPV LVRQLPVKNLTLVDGNTCPVVSVYDLVLANYGLDRGLEDENSAKDYAEIKPYTPAWGE QITGVPRQYIETIAREFADTAHKTHGRSMIILGAGVNHWYHMDMNYRGMINMLIFCGC VGQSGGGWAHYVGQEKLRPQTGWLPLAFALDWNRPPRQMNSTSFFYNHSSQWRYEKVS AQELLSPLADASKYSGHLIDFNVRAERMGWLPSAPQLGRNPLGIKAEADKAGLSPTEF TAQALKSGDLRMACEQPDSSSNHPRNLFVWRSNLLGSSGKGHEYMQKYLLGTESGIQG EELGASDGIKPEEVEWQTAAIEGKLDLLVTLDFRMSSTCLFSDIVLPTATWYEKDDMN TSDMHPFIHPLSAAVDPAWESRSDWEIYKGIAKAFSQVCVGHLGKETDVVLQPLLHDS PAELSQPCEVLDWRKGECDLIPGKTAPNIVAVERDYPATYERFTSLGPLMDKLGNGGK GISWNTQDEIDFLGKLNYTKRDGPAQGRPLIDTAIDASEVILALAPETNGHVAVKAWQ ALGEITGREHTHLALHKEDEKIRFRDIQAQPRKIISSPTWSGLESDHVSYNAGYTNVH ELIPWRTLSGRQQLYQDHPWMRAFGESLVAYRPPIDTRSVSEMRQIPPNGFPEKALNF LTPHQKWGIHSTYSENLLMLTLSRGGPIVWISETDARELTIVDNDWVEVFNANGALTA RAVVSQRVPPGMTMMYHAQERIMNIPGSEVTGMRGGIHNSVTRVCPKPTHMIGGYAQL AWGFNYYGTVGSNRDEFIMIRKMKNVNWLDDEGRDQVQEAKK" repeat_region 1542634..1542662 /note="REP119 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1542672..1544060) /gene="narU" /locus_tag="b1469" /gene_synonym="ECK1463; JW1464; yddF" /db_xref="EcoGene:EG12153" /db_xref="GeneID:945799" CDS complement(1542672..1544060) /gene="narU" /locus_tag="b1469" /gene_synonym="ECK1463; JW1464; yddF" /function="transport; Transport of small molecules: Anions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006807 - nitrogen compound metabolic process" /note="nitrite extrusion protein 2" /codon_start=1 /transl_table=11 /product="nitrate/nitrite transporter" /protein_id="NP_415986.1" /db_xref="GI:16129428" /db_xref="ASAP:ABE-0004901" /db_xref="UniProtKB/Swiss-Prot:P37758" /db_xref="EcoGene:EG12153" /db_xref="GeneID:945799" /translation="MALQNEKNSRYLLRDWKPENPAFWENKGKHIARRNLWISVSCLL LAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRW TVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAK QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWV PLLAIATIAAWSGMNDIASSRASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFA MLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLF LTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQA HKEAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLT WLVYGRRKFSQK" gene complement(1544384..1545714) /gene="yddK" /locus_tag="b1471" /gene_synonym="ECK1465; JW1467; yddJ" /pseudo /db_xref="EcoGene:EG13782" /db_xref="GeneID:947312" CDS complement(join(1544384..1544764,1544764..1545714)) /gene="yddK" /locus_tag="b1471" /gene_synonym="ECK1465; JW1467; yddJ" /GO_process="GO:0009101 - glycoprotein biosynthetic process" /note="pseudogene, leucine-rich protein; putative glycoportein" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0004906" /db_xref="UniProtKB/Swiss-Prot:P76123" /db_xref="EcoGene:EG13782" /db_xref="GeneID:947312" gene complement(1545750..1546028) /gene="yddL" /locus_tag="b1472" /gene_synonym="ECK1466; JW1468" /pseudo /db_xref="EcoGene:EG13783" /db_xref="GeneID:945737" CDS complement(1545750..1546028) /gene="yddL" /locus_tag="b1472" /gene_synonym="ECK1466; JW1468" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative lipoprotein;putative membrane; Not classified; putative outer membrane porin protein" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0004910" /db_xref="UniProtKB/Swiss-Prot:P77519" /db_xref="EcoGene:EG13783" /db_xref="GeneID:945737" gene complement(1546288..1547169) /gene="yddG" /locus_tag="b1473" /gene_synonym="ECK1467; JW1469" /db_xref="EcoGene:EG12713" /db_xref="GeneID:945942" CDS complement(1546288..1547169) /gene="yddG" /locus_tag="b1473" /gene_synonym="ECK1467; JW1469" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="aromatic amino acid exporter" /protein_id="NP_415990.5" /db_xref="GI:145698260" /db_xref="ASAP:ABE-0004912" /db_xref="UniProtKB/Swiss-Prot:P46136" /db_xref="EcoGene:EG12713" /db_xref="GeneID:945942" /translation="MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLS GLLLIFTVGFPRIRQIPKGYLLAGSLLFVSYEICLALSLGYAATHHQAIEVGMVNYLW PSLTILFAILFNGQKTNWLIVPGLLLALVGVCWVLGGDNGLHYDEIINNITTSPLSYF LAFIGAFIWAAYCTVTNKYARGFNGITVFVLLTGASLWVYYFLTPQPEMIFSTPVMIK LISAAFTLGFAYAAWNVGILHGNVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGA LMVCGGSLLCWLATRRG" gene 1547401..1550448 /gene="fdnG" /locus_tag="b1474" /gene_synonym="ECK1468; JW1470" /db_xref="EcoGene:EG11227" /db_xref="GeneID:946035" CDS 1547401..1550448 /gene="fdnG" /locus_tag="b1474" /gene_synonym="ECK1468; JW1470" /EC_number="1.2.1.2" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009061 - anaerobic respiration" /note="formate dehydrogenase-N, nitrate-inducible, alpha subunit" /codon_start=1 /transl_except=(pos:1547986..1547988,aa:Sec) /transl_table=11 /product="formate dehydrogenase-N, alpha subunit, nitrate-inducible" /protein_id="NP_415991.1" /db_xref="GI:16129433" /db_xref="ASAP:ABE-0004917" /db_xref="UniProtKB/Swiss-Prot:P24183" /db_xref="EcoGene:EG11227" /db_xref="GeneID:946035" /translation="MDVSRRQFFKICAGGMAGTTVAALGFAPKQALAQARNYKLLRAK EIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYV NSENRLRYPEYRAPGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLS TGMLCASGASNETGMLTQKFARSLGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWV DIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIR SGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYD KSSWNYQLDENGYAKRDETLTHPRCVWNLLKEHVSRYTPDVVENICGTPKADFLKVCE VLASTSAPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSN IQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPKFFVSL MKSFYGDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDK NKVVSCLSKLKYMVVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDG SIANSGRWLQWHWKGQDAPGEARNDGEILAGIYHHLRELYQSEGGKGVEPLMKMSWNY KQPHEPQSDEVAKENNGYALEDLYDANGVLIAKKGQLLSSFAHLRDDGTTASSCWIYT GSWTEQGNQMANRDNSDPSGLGNTLGWAWAWPLNRRVLYNRASADINGKPWDPKRMLI QWNGSKWTGNDIPDFGNAAPGTPTGPFIMQPEGMGRLFAINKMAEGPFPEHYEPIETP LGTNPLHPNVVSNPVVRLYEQDALRMGKKEQFPYVGTTYRLTEHFHTWTKHALLNAIA QPEQFVEISETLAAAKGINNGDRVTVSSKRGFIRAVAVVTRRLKPLNVNGQQVETVGI PIHWGFEGVARKGYIANTLTPNVGDANSQTPEYKAFLVNIEKA" gene 1550461..1551345 /gene="fdnH" /locus_tag="b1475" /gene_synonym="ECK1469; JW1471" /db_xref="EcoGene:EG11228" /db_xref="GeneID:948794" CDS 1550461..1551345 /gene="fdnH" /locus_tag="b1475" /gene_synonym="ECK1469; JW1471" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration" /note="formate dehydrogenase-N, nitrate-inducible, iron-sulfur beta subunit" /codon_start=1 /transl_table=11 /product="formate dehydrogenase-N, Fe-S (beta) subunit, nitrate-inducible" /protein_id="NP_415992.1" /db_xref="GI:16129434" /db_xref="ASAP:ABE-0004919" /db_xref="UniProtKB/Swiss-Prot:P0AAJ3" /db_xref="EcoGene:EG11228" /db_xref="GeneID:948794" /translation="MAMETQDIIKRSATNSITPPSQVRDYKAEVAKLIDVSTCIGCKA CQVACSEWNDIRDEVGHCVGVYDNPADLSAKSWTVMRFSETEQNGKLEWLIRKDGCMH CEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKC TLCVDRVSVGQEPACVKTCPTGAIHFGTKKEMLELAEQRVAKLKARGYEHAGVYNPEG VGGTHVMYVLHHADQPELYHGLPKDPKIDTSVSLWKGALKPLAAAGFIATFAGLIFHY IGIGPNKEVDDDEEDHHE" gene 1551338..1551991 /gene="fdnI" /locus_tag="b1476" /gene_synonym="ECK1470; JW1472" /db_xref="EcoGene:EG11229" /db_xref="GeneID:946038" CDS 1551338..1551991 /gene="fdnI" /locus_tag="b1476" /gene_synonym="ECK1470; JW1472" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration; GO:0017004 - cytochrome complex assembly" /note="formate dehydrogenase-N, nitrate-inducible, cytochrome B556(Fdn) gamma subunit" /codon_start=1 /transl_table=11 /product="formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible" /protein_id="NP_415993.1" /db_xref="GI:16129435" /db_xref="ASAP:ABE-0004921" /db_xref="UniProtKB/Swiss-Prot:P0AEK7" /db_xref="EcoGene:EG11229" /db_xref="GeneID:946038" /translation="MSKSKMIVRTKFIDRACHWTVVICFFLVALSGISFFFPTLQWLT QTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNIVEVLKGNEHK VADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGI ILIHAILIHMYMAFWVKGSIKGMIEGKVSRRWAKKHHPRWYREIEKAEAKKESEEGI" repeat_region 1552071..1552167 /note="RIP120 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" repeat_region 1552249..1552345 /note="RIP121 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(1552398..1552682) /gene="yddM" /locus_tag="b1477" /gene_synonym="ECK1471; JW5908" /db_xref="EcoGene:EG13784" /db_xref="GeneID:946040" CDS complement(1552398..1552682) /gene="yddM" /locus_tag="b1477" /gene_synonym="ECK1471; JW5908" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator" /protein_id="NP_415994.4" /db_xref="GI:145698261" /db_xref="ASAP:ABE-0004925" /db_xref="UniProtKB/Swiss-Prot:P67699" /db_xref="EcoGene:EG13784" /db_xref="GeneID:946040" /translation="MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTG KAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ" gene complement(1552828..1553838) /gene="adhP" /locus_tag="b1478" /gene_synonym="ECK1472; JW1474; yddN" /db_xref="EcoGene:EG12622" /db_xref="GeneID:946036" CDS complement(1552828..1553838) /gene="adhP" /locus_tag="b1478" /gene_synonym="ECK1472; JW1474; yddN" /EC_number="1.1.1.1" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_process="GO:0009061 - anaerobic respiration" /note="alcohol dehydrogenase" /codon_start=1 /transl_table=11 /product="ethanol-active dehydrogenase/acetaldehyde-active reductase" /protein_id="NP_415995.4" /db_xref="GI:90111280" /db_xref="ASAP:ABE-0004928" /db_xref="UniProtKB/Swiss-Prot:P39451" /db_xref="EcoGene:EG12622" /db_xref="GeneID:946036" /translation="MKAAVVTKDHHVDVTYKTLRSLKHGEALLKMECCGVCHTDLHVK NGDFGDKTGVILGHEGIGVVAEVGPGVTSLKPGDRASVAWFYEGCGHCEYCNSGNETL CRSVKNAGYSVDGGMAEECIVVADYAVKVPDGLDSAAASSITCAGVTTYKAVKLSKIR PGQWIAIYGLGGLGNLALQYAKNVFNAKVIAIDVNDEQLKLATEMGADLAINSHTEDA AKIVQEKTGGAHAAVVTAVAKAAFNSAVDAVRAGGRVVAVGLPPESMSLDIPRLVLDG IEVVGSLVGTRQDLTEAFQFAAEGKVVPKVALRPLADINTIFTEMEEGKIRGRMVIDF RH" gene complement(1553972..1555669) /gene="maeA" /locus_tag="b1479" /gene_synonym="ECK1473; JW5238; sfcA" /db_xref="EcoGene:EG10948" /db_xref="GeneID:946031" CDS complement(1553972..1555669) /gene="maeA" /locus_tag="b1479" /gene_synonym="ECK1473; JW5238; sfcA" /EC_number="1.1.1.38" /function="enzyme; Central intermediary metabolism: Gluconeogenesis" /GO_process="GO:0006094 - gluconeogenesis" /note="NAD-linked malate dehydrogenase (malic enzyme)" /codon_start=1 /transl_table=11 /product="malate dehydrogenase, decarboxylating, NAD-requiring; malic enzyme" /protein_id="NP_415996.2" /db_xref="GI:90111281" /db_xref="ASAP:ABE-0004931" /db_xref="UniProtKB/Swiss-Prot:P26616" /db_xref="EcoGene:EG10948" /db_xref="GeneID:946031" /translation="MEPKTKKQRSLYIPYAGPVLLEFPLLNKGSAFSMEERRNFNLLG LLPEVVETIEEQAERAWIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVNNHLDEMMPV IYTPTVGAACERFSEIYRRSRGVFISYQNRHNMDDILQNVPNHNIKVIVVTDGERILG LGDQGIGGMGIPIGKLSLYTACGGISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRI TDDEYYEFVDEFIQAVKQRWPDVLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQGTAA VTVGTLIAASRAAGGQLSEKKIVFLGAGSAGCGIAEMIISQTQREGLSEEAARQKVFM VDRFGLLTDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQ TGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVV WKDKIYPIAQCNNAFIFPGIGLGVIASGASRITDEMLMSASETLAQYSPLVLNGEGMV LPELKDIQKVSRAIAFAVGKMAQQQGVAVKTSAEALQQAIDDNFWQAEYRDYRRTSI" gene complement(1555826..1555963) /gene="sra" /locus_tag="b1480" /gene_synonym="ECK1474; JW5962; rpsV" /db_xref="EcoGene:EG11508" /db_xref="GeneID:946030" CDS complement(1555826..1555963) /gene="sra" /locus_tag="b1480" /gene_synonym="ECK1474; JW5962; rpsV" /function="structural component; Ribosomal proteins - synthesis, modification" /experiment="N-terminus verified by Edman degradation: PMID 11292794" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /note="stationary phase-induced ribosome-associated protein" /codon_start=1 /transl_table=11 /product="stationary-phase-induced ribosome-associated protein" /protein_id="NP_415997.1" /db_xref="GI:16129439" /db_xref="ASAP:ABE-0004935" /db_xref="UniProtKB/Swiss-Prot:P68191" /db_xref="EcoGene:EG11508" /db_xref="GeneID:946030" /translation="MKSNRQARHILGLDHKISNQRKIVTEGDKSSVVNNPTGRKRPAE K" gene complement(1556065..1556280) /gene="bdm" /locus_tag="b1481" /gene_synonym="ECK1475; JW5239; yddX" /db_xref="EcoGene:EG14301" /db_xref="GeneID:946041" CDS complement(1556065..1556280) /gene="bdm" /locus_tag="b1481" /gene_synonym="ECK1475; JW5239; yddX" /codon_start=1 /transl_table=11 /product="biofilm-dependent modulation protein" /protein_id="NP_415998.4" /db_xref="GI:90111282" /db_xref="ASAP:ABE-0004938" /db_xref="UniProtKB/Swiss-Prot:P76127" /db_xref="EcoGene:EG14301" /db_xref="GeneID:946041" /translation="MFTYYQAENSTAEPALVNAIEQGLRAQHGVVTEDDILMELTKWV EASDNDILSDIYQQTINYVVSGQHPTL" gene 1556625..1557056 /gene="osmC" /locus_tag="b1482" /gene_synonym="ECK1476; JW1477" /db_xref="EcoGene:EG10680" /db_xref="GeneID:946043" CDS 1556625..1557056 /gene="osmC" /locus_tag="b1482" /gene_synonym="ECK1476; JW1477" /function="phenotype; Osmotic adaptation" /GO_process="GO:0006970 - response to osmotic stress" /note="osmotically inducible protein" /codon_start=1 /transl_table=11 /product="lipoyl-dependent Cys-based peroxidase, hydroperoxide resistance; salt-shock inducible membrane protein; peroxiredoxin" /protein_id="NP_415999.1" /db_xref="GI:16129441" /db_xref="ASAP:ABE-0004944" /db_xref="UniProtKB/Swiss-Prot:P0C0L2" /db_xref="EcoGene:EG10680" /db_xref="GeneID:946043" /translation="MTIHKKGQAHWEGDIKRGKGTVSTESGVLNQQPYGFNTRFEGEK GTNPEELIGAAHAACFSMALSLMLGEAGFTPTSIDTTADVSLDKVDAGFAITKIALKS EVAVPGIDASTFDGIIQKAKAGCPVSQVLKAEITLDYQLKS" repeat_region 1557063..1557081 /note="REP122 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1557112..1558038) /gene="ddpF" /locus_tag="b1483" /gene_synonym="ECK1477; JW1478; yddO" /db_xref="EcoGene:EG13786" /db_xref="GeneID:946020" CDS complement(1557112..1558038) /gene="ddpF" /locus_tag="b1483" /gene_synonym="ECK1477; JW1478; yddO" /function="putative transport; Not classified" /GO_component="GO:0005737 - cytoplasm" /note="ATP-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="D,D-dipeptide ABC transporter ATPase" /protein_id="NP_416000.1" /db_xref="GI:16129442" /db_xref="ASAP:ABE-0004947" /db_xref="UniProtKB/Swiss-Prot:P77622" /db_xref="EcoGene:EG13786" /db_xref="GeneID:946020" /translation="MSDTLLTLRDVHINFPARKNWLGKTTEHVHAINGIDLQIRRGET LGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQMVFQDPLSSLNPRLPVWRI ITEPLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQ PDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYL GQIVELGDAQQVLTAPAHPYTRLLLDSLPAIDKPLEEEWALRKTDLPGNRTLPQGCFF YERCPLATHGCEVRQSLAIREDGRELRCWRAL" gene complement(1558031..1559017) /gene="ddpD" /locus_tag="b1484" /gene_synonym="ECK1478; JW1479; yddP" /db_xref="EcoGene:EG13787" /db_xref="GeneID:946002" CDS complement(1558031..1559017) /gene="ddpD" /locus_tag="b1484" /gene_synonym="ECK1478; JW1479; yddP" /function="putative transport; Not classified" /GO_component="GO:0005737 - cytoplasm" /note="ATP-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="D,D-dipeptide ABC transporter ATPase" /protein_id="NP_416001.1" /db_xref="GI:16129443" /db_xref="ASAP:ABE-0004949" /db_xref="UniProtKB/Swiss-Prot:P77268" /db_xref="EcoGene:EG13787" /db_xref="GeneID:946002" /translation="MTQPVLDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGES GSGKSVTAMLIMRLLPTGSYCVHRGQISLLGEDVLNAREKQLRQWRGARVAMIFQEPM TALNPTRRIGLQMMDVIRHHQPISRREARAKAIDLLEEMQIPDAVEVMSRYPFELSGG MRQRVMIALAFSCEPQLIIADEPTTALDVTVQLQVLRLLKHKARASGTAVLFISHDMA VVSQLCDSVYVMYAGSVIESGVTADVIHHPRHPYTIGLLQCAPEHGVPRQLLPAIPGT VPNLTHLPDGCAFRDRCYAAGAQCENVPALTACGDNNQRCACWYPQQEVISV" gene complement(1559014..1559910) /gene="ddpC" /locus_tag="b1485" /gene_synonym="ECK1479; JW1480; yddQ" /db_xref="EcoGene:EG13788" /db_xref="GeneID:946028" CDS complement(1559014..1559910) /gene="ddpC" /locus_tag="b1485" /gene_synonym="ECK1479; JW1480; yddQ" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="D,D-dipeptide ABC transporter permease" /protein_id="NP_416002.1" /db_xref="GI:16129444" /db_xref="ASAP:ABE-0004953" /db_xref="UniProtKB/Swiss-Prot:P77463" /db_xref="EcoGene:EG13788" /db_xref="GeneID:946028" /translation="MMLSEETSAVRPQKQTRFNGAKLVWMLKGSPLTVTSAVIIVLML LMMIFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLV VVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAM LAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQA SLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAV GFNLFGDGIRDLLDPKAGGKQS" gene complement(1559907..1560929) /gene="ddpB" /locus_tag="b1486" /gene_synonym="ECK1480; JW1481; yddR" /db_xref="EcoGene:EG13789" /db_xref="GeneID:946044" CDS complement(1559907..1560929) /gene="ddpB" /locus_tag="b1486" /gene_synonym="ECK1480; JW1481; yddR" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="D,D-dipeptide ABC transporter permease" /protein_id="NP_416003.1" /db_xref="GI:16129445" /db_xref="ASAP:ABE-0004955" /db_xref="UniProtKB/Swiss-Prot:P77308" /db_xref="EcoGene:EG13789" /db_xref="GeneID:946044" /translation="MTFWSILRQRCWGLVLVVAGVCVITFIISHLIPGDPARLLAGDR ASDAIVENIRQQLGLDQPLYVQFYRYVSDLFHGDLGTSIRTGRPVLEELRIFFPATLE LAFGALLLALLIGIPLGILSAVWRNRWLDHLVRIMAITGISTPAFWLGLGVIVLFYGH LQILPGGGRLDDWLDPPTHVTGFYLLDALLEGNGEVFFNALQHLILPALTLAFVHLGI VARQIRSAMLEQLSEDYIRTARASGLPGWYIVLCYALPNALIPSITVLGLALGDLLYG AVLTETVFAWPGMGAWVVTSIQALDFPAVMGFAVVVSFAYVLVNLVVDLLYLWIDPRI GRGGGE" gene complement(1560931..1562481) /gene="ddpA" /locus_tag="b1487" /gene_synonym="ECK1481; JW5240; yddS" /db_xref="EcoGene:EG13790" /db_xref="GeneID:946052" CDS complement(1560931..1562481) /gene="ddpA" /locus_tag="b1487" /gene_synonym="ECK1481; JW5240; yddS" /function="putative factor; Not classified" /GO_component="GO:0042597 - periplasmic space" /note="periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="D,D-dipeptide ABC transporter periplasmic binding protein" /protein_id="NP_416004.1" /db_xref="GI:16129446" /db_xref="ASAP:ABE-0004958" /db_xref="UniProtKB/Swiss-Prot:P76128" /db_xref="EcoGene:EG13790" /db_xref="GeneID:946052" /translation="MKRSISFRPTLLALVLATNFPVAHAAVPKDMLVIGKAADPQTLD PAVTIDNNDWTVTYPSYQRLVQYKTDGDKGSTDVEGDLASSWKASDDQKEWTFTLKDN AKFADGTPVTAEAVKLSFERLLKIGQGPAEAFPKDLKIDAPDEHTVKFTLSQPFAPFL YTLANDGASIINPAVLKEHAADDARGFLAQNTAGSGPFMLKSWQKGQQLVLVPNPHYP GNKPNFKRVSVKIIGESASRRLQLSRGDIDIADALPVDQLNALKQENKVNVAEYPSLR VTYLYLNNSKAPLNQADLRRAISWSTDYQGMVNGILSGNGKQMRGPIPEGMWGYDATA MQYNHDETKAKAEWDKVTSKPTSLTFLYSDNDPNWEPIALATQSSLNKLGIIVKLEKL ANATMRDRVGKGDYDIAIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYENSEVDKL LRNALATTDQTQRTRDYQQAQKIVIDDAAYVYLFQKNYQLAMNKEVKGFVFNPMLEQV FNINTMSK" gene complement(1562495..1563076) /gene="ddpX" /locus_tag="b1488" /gene_synonym="ECK1482; JW1483; vanX; yddT" /db_xref="EcoGene:EG13791" /db_xref="GeneID:945532" CDS complement(1562495..1563076) /gene="ddpX" /locus_tag="b1488" /gene_synonym="ECK1482; JW1483; vanX; yddT" /EC_number="3.4.13.-" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006970 - response to osmotic stress" /codon_start=1 /transl_table=11 /product="D-ala-D-ala dipeptidase, Zn-dependent" /protein_id="NP_416005.1" /db_xref="GI:16129447" /db_xref="ASAP:ABE-0004960" /db_xref="UniProtKB/Swiss-Prot:P77790" /db_xref="EcoGene:EG13791" /db_xref="GeneID:945532" /translation="MSDTTELVDLAVIFPDLEIELKYACADNITGKAIYQQARCLLHK DAITALAKSISIAQLSGLQLVIYDAYRPQQAQAMLWQACPDPQYVVDVTVGSNHSRGT AIDLTLRDEHGNILDMGAGFDEMHERSHAYHPSVPPAAQRNRLLLNAIMTGGGFVGIS SEWWHFELPQAASYPLLADQFSCFISPGTQHVS" gene complement(1563334..1565733) /gene="dosP" /locus_tag="b1489" /gene_synonym="dos; ECK1483; JW1484; yddU" /db_xref="EcoGene:EG13792" /db_xref="GeneID:945815" CDS complement(1563334..1565733) /gene="dosP" /locus_tag="b1489" /gene_synonym="dos; ECK1483; JW1484; yddU" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="oxygen sensor, c-di-GMP phosphodiesterase, heme-regulated; cold- and stationary phase-induced bioflim regulator" /protein_id="NP_416006.4" /db_xref="GI:162135902" /db_xref="ASAP:ABE-0004963" /db_xref="UniProtKB/Swiss-Prot:P76129" /db_xref="EcoGene:EG13792" /db_xref="GeneID:945815" /translation="MKLTDADNAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKL WGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIW TRFALSKVSAEGKVYYLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQ CNRAFTEMFGYCISEASGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRT GEKIWIKASISPVYDVLAHLQNLVMTFSDITEERQIRQLEGNILAAMCSSPPFHEMGE IICRNIESVLNESHVSLFALRNGMPIHWASSSHGAEIQNAQSWSATIRQRDGAPAGIL QIKTSSGAETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHN YLDDLVDKAVSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFREKLKPDQYLCRI EGTQFVLVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISYDLGKNRDYL LSTAHNAMDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIF AETGELYGIEALARWHDPLHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRS QNIHIPALSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFK RIQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAI TSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPLK I" gene complement(1565758..1567140) /gene="dosC" /locus_tag="b1490" /gene_synonym="ECK1484; JW5241; yddV" /db_xref="EcoGene:EG13793" /db_xref="GeneID:945835" CDS complement(1565758..1567140) /gene="dosC" /locus_tag="b1490" /gene_synonym="ECK1484; JW5241; yddV" /codon_start=1 /transl_table=11 /product="diguanylate cyclase, cold- and stationary phase-induced oxygen-dependent biofilm regulator" /protein_id="NP_416007.3" /db_xref="GI:145698262" /db_xref="ASAP:ABE-0004965" /db_xref="UniProtKB/Swiss-Prot:P0AA89" /db_xref="EcoGene:EG13793" /db_xref="GeneID:945835" /translation="MEMYFKRMKDEWTGLVEQADPPIRAKAAEIAVAHAHYLSIEFYR IVRIDPHAEEFLSNEQVERQLKSAMERWIINVLSAQVDDVERLIQIQHTVAEVHARIG IPVEIVEMGFRVLKKILYPVIFSSDYSAAEKLQVYHFSINSIDIAMEVMTRAFTFSDS SASKEDENYRIFSLLENAEEEKERQIASILSWEIDIIYKILLDSDLGSSLPLSQADFG LWFNHKGRHYFSGIAEVGHISRLIQDFDGIFNQTMRNTRNLNNRSLRVKFLLQIRNTV SQIITLLRELFEEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV DKFKEINDTWGHNTGDEILRKVSQAFYDNVRSSDYVFRYGGDEFIIVLTEASENETLR TAERIRSRVEKTKLKAANGEDIALSLSIGAAMFNGHPDYERLIQIADEALYIAKRRGR NRVELWKASL" gene complement(1567504..1568823) /gene="yddW" /locus_tag="b1491" /gene_synonym="ECK1485; JW1486" /db_xref="EcoGene:EG13794" /db_xref="GeneID:945975" CDS complement(1567504..1568823) /gene="yddW" /locus_tag="b1491" /gene_synonym="ECK1485; JW1486" /codon_start=1 /transl_table=11 /product="liprotein, glycosyl hydrolase homolog" /protein_id="NP_416008.1" /db_xref="GI:16129450" /db_xref="ASAP:ABE-0004970" /db_xref="UniProtKB/Swiss-Prot:P64426" /db_xref="EcoGene:EG13794" /db_xref="GeneID:945975" /translation="MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSK PPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLG INTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWF NPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITS IVAEVVSRYPVDGVQFDDYFYTESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIA KVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLD YIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMING GVPELKKQLDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS" gene complement(1568954..1570489) /gene="gadC" /locus_tag="b1492" /gene_synonym="acsA; ECK1486; JW1487; xasA" /db_xref="EcoGene:EG12456" /db_xref="GeneID:946057" CDS complement(1568954..1570489) /gene="gadC" /locus_tag="b1492" /gene_synonym="acsA; ECK1486; JW1487; xasA" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="acid sensitivity protein, putative transporter" /codon_start=1 /transl_table=11 /product="glutamate:gamma-aminobutyric acid antiporter" /protein_id="NP_416009.1" /db_xref="GI:16129451" /db_xref="ASAP:ABE-0004973" /db_xref="UniProtKB/Swiss-Prot:P63235" /db_xref="EcoGene:EG12456" /db_xref="GeneID:946057" /translation="MATSVQTGKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVF FLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIG FIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGF FAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVE ASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFT VLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNK NGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVL VLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLV VSFLVVLALPFILYAVHDRKGKANTGVTLEPINSQNAPKGHFFLHPRARSPHYIVMND KKH" gene complement(1570645..1572045) /gene="gadB" /locus_tag="b1493" /gene_synonym="ECK1487; JW1488" /db_xref="EcoGene:EG11490" /db_xref="GeneID:946058" CDS complement(1570645..1572045) /gene="gadB" /locus_tag="b1493" /gene_synonym="ECK1487; JW1488" /EC_number="4.1.1.15" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /experiment="N-terminus verified by Edman degradation: PMID 8455549" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009063 - cellular amino acid catabolic process; GO:0006520 - cellular amino acid metabolic process" /note="glutamate decarboxylase isozyme" /codon_start=1 /transl_table=11 /product="glutamate decarboxylase B, PLP-dependent" /protein_id="NP_416010.1" /db_xref="GI:16129452" /db_xref="ASAP:ABE-0004976" /db_xref="UniProtKB/Swiss-Prot:P69910" /db_xref="EcoGene:EG11490" /db_xref="GeneID:946058" /translation="MDKKQVTDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQ IINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVN MVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCG PVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYE FPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHK FGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRL GREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTL YDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD HPKLQGIAQQNSFKHT" gene complement(1572407..1575202) /gene="pqqL" /locus_tag="b1494" /gene_synonym="ECK1488; JW1489; pqqE; pqqM; yddC" /db_xref="EcoGene:EG11744" /db_xref="GeneID:946059" CDS complement(1572407..1575202) /gene="pqqL" /locus_tag="b1494" /gene_synonym="ECK1488; JW1489; pqqE; pqqM; yddC" /function="putative enzyme; Not classified" /GO_component="GO:0005737 - cytoplasm" /note="putative zinc protease" /codon_start=1 /transl_table=11 /product="putative periplasmic M16 family zinc metalloendopeptidase" /protein_id="NP_416011.1" /db_xref="GI:16129453" /db_xref="ASAP:ABE-0004979" /db_xref="UniProtKB/Swiss-Prot:P31828" /db_xref="EcoGene:EG11744" /db_xref="GeneID:946059" /translation="MEIIMRNLCFLLTLVATLLLPGRLIAAALPQDEKLITGQLDNGL RYMIYPHAHPKDQVNLWLQIHTGSLQEEDNELGVAHFVEHMMFNGTKTWPGNKVIETF ESMGLRFGRDVNAYTSYDETVYQVSLPTTQKQNLQQVMAIFSEWSNAATFEKLEVDAE RGVITEEWRAHQDAKWRTSQARRPFLLANTRNLDREPIGLMDTVATVTPAQLRQFYQR WYQPNNMTFIVVGDIDSKEALALIKDNLSKLPANKAAENRVWPTKAENHLRFNIINDK ENRVNGIALYYRLPMVQVNDEQSFIEQAEWSMLVQLFNQRLQERIQSGELKTISGGTA RSVKIAPDYQSLFFRVNARDDNMQDAANALMAELATIDQHGFSAEELDDVKSTRLTWL KNAVDQQAERDLRMLTSRLASSSLNNTPFLSPEETYQLSKRLWQQITVQSLAEKWQQL RKNQDAFWEQMVNNEVAAKKALSPAAILALEKEYANKKLAAYVFPGRNLSLTVDADPQ AEISSKETLAENLTSLTLSNGARVILAKSAGEEQKLQIIAVSNKGDLSFPAQQKSLIA LANKAVSGSGVGELSSSSLKRWSAENSVTMSSKVSGMNTLLSVSARTNNPEPGFQLIN QRITHSTINDNIWASLQNAQIQALKTLDQRPAEKFAQQMYETRYADDRTKLLQENQIA QFTAADALAADRQLFSSPADITFVIVGNVAEDKLVALITRYLGSIKHSDSPLAAGKPL TRATDNASVTVKEQNEPVAQVSQWKRYDSRTPVNLPTRMALDAFNVALAKDLRVNIRE QASGAYSVSSRLSVDPQAKDISHLLAFTCQPERHDELLTLANEVMVKRLAKGISEQEL NEYQQNVQRSLDIQQRSVQQLANTIVNSLIQYDDPAAWTEQEQLLKQMTVENVNTAVK QYLSHPVNTYTGVLLPK" gene complement(1575247..1577619) /gene="yddB" /locus_tag="b1495" /gene_synonym="ECK1489; JW1490" /db_xref="EcoGene:EG11743" /db_xref="GeneID:945961" CDS complement(1575247..1577619) /gene="yddB" /locus_tag="b1495" /gene_synonym="ECK1489; JW1490" /codon_start=1 /transl_table=11 /product="putative TonB-dependent outer membrane receptor" /protein_id="NP_416012.1" /db_xref="GI:16129454" /db_xref="ASAP:ABE-0004982" /db_xref="UniProtKB/Swiss-Prot:P31827" /db_xref="EcoGene:EG11743" /db_xref="GeneID:945961" /translation="MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVN GNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPY QNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG RFNGGVIDAKIKRFNADDSKVKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYYSPD FKKNFYTLSFNQELADNFGVTAGLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALS KFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGLAWDMDTQLAWAKLR TTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQ KFAVGNVSHQPYFGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGRLGIDN YTLYMADRISWRNVSLMPGVRYDYDNYLSNHNISPRFMTEWDIFANQTSMITAGYNRY YGGNILDMGLRDIRNSWTESVSGNKTLTRYQDLKTPYNDELAMGLQQKIGKNVIARAN YVYREAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFSLSFELAEPLHIRQVDINPQ IVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFT HQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDYKQYVDEKLDSSLTWDTRLSW TPQFLQQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF" gene complement(1577657..1579342) /gene="yddA" /locus_tag="b1496" /gene_synonym="ECK1490; JW5242" /db_xref="EcoGene:EG11742" /db_xref="GeneID:945945" CDS complement(1577657..1579342) /gene="yddA" /locus_tag="b1496" /gene_synonym="ECK1490; JW5242" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative multidrug ABC transporter permease/ATPase" /protein_id="NP_416013.1" /db_xref="GI:16129455" /db_xref="ASAP:ABE-0004984" /db_xref="UniProtKB/Swiss-Prot:P31826" /db_xref="EcoGene:EG11742" /db_xref="GeneID:945945" /translation="MITIPITLRMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILG VVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPALLGIFVLISVNKTWLIKLLTIR WREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQ SLSMLITFTVILWESAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRP LNVEKQRSEATFRTNLVQHNKQAELIALSNAESLQRQELSDNFHTIKENWHRLMNRQR WLDYWQNIYSRSLSVLPYFLLLPQFISGQINLGGLMKSRQAFMLVSNNLSWFIYKYDE LAELAAVIDRLYEFHQLTEQRPTNKPKNCQHAVQVADASIRTPDNKIILENLNFHVSP GKWLLLKGYSGAGKTTLLKTLSHCWPWFKGDISSPADSWYVSQTPLIKTGLLKEIICK ALPLPVDDKSLSEVLHQVGLGKLAARIHDHDRWGDILSSGEKQRIALARLILRRPKWI FLDETTSHLEEQEAIRLLRLVREKLPTSGVIMVTHQPGVWNLADDICDISAVL" gene complement(1579633..1580790) /gene="ydeM" /locus_tag="b1497" /gene_synonym="ECK1491; JW1492" /db_xref="EcoGene:EG13795" /db_xref="GeneID:945981" CDS complement(1579633..1580790) /gene="ydeM" /locus_tag="b1497" /gene_synonym="ECK1491; JW1492" /function="putative enzyme; Not classified" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="putative YdeN-specific sulfatase-maturating enzyme" /protein_id="NP_416014.4" /db_xref="GI:90111285" /db_xref="ASAP:ABE-0004986" /db_xref="UniProtKB/Swiss-Prot:P76134" /db_xref="EcoGene:EG13795" /db_xref="GeneID:945981" /translation="MHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIK QYIAASGNQVYFTWQGGEPTLAGLDFFRKVIHYQQRYAGQKRIFNALQTNGILLNNEW CAFLKEHEFLVGISIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVI NNVNVHYPLEVYHFLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAY GKFMSTIFMQWVKNDVGEIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIY ECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRIPAKCQQCAYKPICNGGCPKHRIT KVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN" gene complement(1580842..1582524) /gene="ydeN" /locus_tag="b1498" /gene_synonym="ECK1492; JW5243" /db_xref="EcoGene:EG13796" /db_xref="GeneID:945957" CDS complement(1580842..1582524) /gene="ydeN" /locus_tag="b1498" /gene_synonym="ECK1492; JW5243" /function="putative enzyme; Not classified" /GO_process="GO:0006790 - sulfur metabolic process" /note="putative sulfatase" /codon_start=1 /transl_table=11 /product="putative Ser-type periplasmic non-aryl sulfatase" /protein_id="NP_416015.2" /db_xref="GI:90111286" /db_xref="ASAP:ABE-0004988" /db_xref="UniProtKB/Swiss-Prot:P77318" /db_xref="EcoGene:EG13796" /db_xref="GeneID:945957" /translation="MKSALKKSVVSTSISLILASGMAAFAAHAADDVKLKATKTNVAF SDFTPTEYSTKGKPNIIVLTMDDLGYGQLPFDKGSFDPKTMENREVVDTYKIGIDKAI EAAQKSTPTLLSLMDEGVRFTNGYVAHGVSGPSRAAIMTGRAPARFGVYSNTDAQDGI PLTETFLPELFQNHGYYTAAVGKWHLSKISNVPVPEDKQTRDYHDNFTTFSAEEWQPQ NRGFDYFMGFHAAGTAYYNSPSLFKNRERVPAKGYISDQLTDEAIGVVDRAKTLDQPF MLYLAYNAPHLPNDNPAPDQYQKQFNTGSQTADNYYASVYSVDQGVKRILEQLKKNGQ YDNTIILFTSDNGAVIDGPLPLNGAQKGYKSQTYPGGTHTPMFMWWKGKLQPGNYDKL ISAMDFYPTALDAADISIPKDLKLDGVSLLPWLQDKKQGEPHKNLTWITSYSHWFDEE NIPFWDNYHKFVRHQSDDYPHNPNTEDLSQFSYTVRNNDYSLVYTVENNQLGLYKLTD LQQKDNLAAANPQVVKEMQGVVREFIDSSQPPLSEVNQEKFNNIKKALSEAK" gene complement(1582926..1583687) /gene="ydeO" /locus_tag="b1499" /gene_synonym="ECK1493; JW1494" /db_xref="EcoGene:EG13797" /db_xref="GeneID:945922" CDS complement(1582926..1583687) /gene="ydeO" /locus_tag="b1499" /gene_synonym="ECK1493; JW1494" /function="regulator; Not classified" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative ARAC-type regulatory protein" /codon_start=1 /transl_table=11 /product="UV-inducible global regulator, EvgA-, GadE-dependent" /protein_id="NP_416016.1" /db_xref="GI:16129458" /db_xref="ASAP:ABE-0004992" /db_xref="UniProtKB/Swiss-Prot:P76135" /db_xref="EcoGene:EG13797" /db_xref="GeneID:945922" /translation="MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY ERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERN HHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKPAHPWKLKDICDCL YISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYA FRKHFGNSPKRVSKEYRCQSHTGMNTGNTMNALAI" gene complement(1583762..1583959) /gene="safA" /locus_tag="b1500" /gene_synonym="ECK4475; yneN" /db_xref="EcoGene:EG14466" /db_xref="GeneID:946061" CDS complement(1583762..1583959) /gene="safA" /locus_tag="b1500" /gene_synonym="ECK4475; yneN" /function="regulator; Global regulatory functions" /codon_start=1 /transl_table=11 /product="two-component system connector membrane protein, EvgSA to PhoQP" /protein_id="NP_416017.1" /db_xref="GI:16129459" /db_xref="UniProtKB/Swiss-Prot:P76136" /db_xref="EcoGene:EG14466" /db_xref="GeneID:946061" /translation="MHATTVKNKITQRDNYKEIMSAIVVVLLLTLTLIAIFSAIDQLS ISEMGRIARDLTHFIINSLQG" gene complement(1584207..1586486) /gene="ydeP" /locus_tag="b1501" /gene_synonym="ECK1494; JW1495" /db_xref="EcoGene:EG13798" /db_xref="GeneID:946055" CDS complement(1584207..1586486) /gene="ydeP" /locus_tag="b1501" /gene_synonym="ECK1494; JW1495" /function="putative enzyme; Not classified" /note="putative oxidoreductase, major subunit" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_416018.1" /db_xref="GI:16129460" /db_xref="ASAP:ABE-0005001" /db_xref="UniProtKB/Swiss-Prot:P77561" /db_xref="EcoGene:EG13798" /db_xref="GeneID:946055" /translation="MKKKIESYQGAAGGWGAVKSVANAVRKQMDIRQDVIAMFDMNKP EGFDCPGCAWPDPKHSASFDICENGAKAIAWEVTDKQVNASFFAENTVQSLLTWGDHE LEAAGRLTQPLKYDAVSDCYKPLSWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAA FLYQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLEDFEKCDLVICIGHN PGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYY NVRIGGDMALLKGMMRLLIERDDAASAAGRPSLLDDEFIQTHTVGFDELRRDVLNSEW KDIERISGLSQTQIAELADAYAAAERTIICYGMGITQHEHGTQNVQQLVNLLLMKGNI GKPGAGICPLRGHSNVQGDRTVGITEKPSAEFLARLGERYGFTPPHAPGHAAIASMQA ICTGQARALICMGGNFALAMPDREASAVPLTQLDLAVHVATKLNRSHLLTARHSYILP VLGRSEIDMQKNGAQAVTVEDSMSMIHASRGVLKPAGVMLKSECAVVAGIAQAALPQS VVAWEYLVEDYDRIRNDIEAVLPEFADYNQRIRHPGGFHLINAAAERRWMTPSGKANF ITSKGLLEDPSSAFNSKLVMATVRSHDQYNTTIYGMDDRYRGVFGQRDVVFMSAKQAK ICRVKNGERVNLIALTPDGKRSSRRMDRLKVVIYPMADRSLVTYFPESNHMLTLDNHD PLSGIPGYKSIPVELEPSN" gene complement(1586820..1587734) /gene="ydeQ" /locus_tag="b1502" /gene_synonym="ECK1495; fmlD; JW1496" /db_xref="EcoGene:EG13799" /db_xref="GeneID:946050" CDS complement(1586820..1587734) /gene="ydeQ" /locus_tag="b1502" /gene_synonym="ECK1495; fmlD; JW1496" /function="putative structural component; Surface structures" /note="putative adhesin; similar to FimH protein" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_416019.1" /db_xref="GI:16129461" /db_xref="ASAP:ABE-0005006" /db_xref="UniProtKB/Swiss-Prot:P77588" /db_xref="EcoGene:EG13799" /db_xref="GeneID:946050" /translation="MGKTISIKVLFGIYLLLMAGKVFAFSCNVDGGSSIGAGTTSVYV NLDPVIQPGQNLVVDLSQHISCWNDYGGWYDTDHINLVQGSAFAGSLQSYKGSLYWNN VTYPFPLTTNTNVLDIGDKTPMPLPLKLYITPVGAAGGVVIKAGEVIARIHMYKIATL GSGNPRNFTWNIISNNNVVMPTGGCTVDSRNVTVDLPDFPGSAEIPLGVYCSSEQKLS FYLSGATTDSSRQVFANTAPDATKASGVGVTLMRNGKILATGENVSLGTVNKSKVPLG LSATYGQTGNKVSAGTVQSVIGVTFIYE" gene complement(1587793..1588296) /gene="ydeR" /locus_tag="b1503" /gene_synonym="ECK1496; JW1497" /db_xref="EcoGene:EG13800" /db_xref="GeneID:946049" CDS complement(1587793..1588296) /gene="ydeR" /locus_tag="b1503" /gene_synonym="ECK1496; JW1497" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="putative fimbrial-like protein" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_416020.1" /db_xref="GI:16129462" /db_xref="ASAP:ABE-0005008" /db_xref="UniProtKB/Swiss-Prot:P77294" /db_xref="EcoGene:EG13800" /db_xref="GeneID:946049" /translation="MKRLHKRFLLATFCALFTATLQAADVTITVNGRVVAKPCTIQTK EANVNLGDLYTRNLQQPGSASGWHNITLSLTDCPVETSAVTAIVTGSTDNTGYYKNEG TAENIQIELRDDQDAALKNGDSKTVIVDEITRNAQFPLKARAITVNGNASQGTIEALI NVIYTWQ" gene complement(1588309..1588839) /gene="ydeS" /locus_tag="b1504" /gene_synonym="ECK1497; JW1498" /db_xref="EcoGene:EG13801" /db_xref="GeneID:946047" CDS complement(1588309..1588839) /gene="ydeS" /locus_tag="b1504" /gene_synonym="ECK1497; JW1498" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="putative fimbrial-like protein" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_416021.1" /db_xref="GI:16129463" /db_xref="ASAP:ABE-0005013" /db_xref="UniProtKB/Swiss-Prot:P77789" /db_xref="EcoGene:EG13801" /db_xref="GeneID:946047" /translation="MKYNNIIFLGLCLGLTTYSALSADSVIKISGRVLDYGCTVSSDS LNFTVDLQKNSARQFPTTGSTSPAVPFQITLSECSKGTTGVRVAFNGIEDAENNTLLK LDEGSNTASGLGIEILDANMRPVKLNDLHAGMQWIPLVPEQNNILPYSARLKSTQKSV NPGLVRASATFTLEFQ" gene complement(1588853..1590079) /gene="ydeT" /locus_tag="b1505" /gene_synonym="ECK1498; fmlC; JW1499" /pseudo /db_xref="EcoGene:EG13802" /db_xref="GeneID:946042" CDS complement(1588853..1590079) /gene="ydeT" /locus_tag="b1505" /gene_synonym="ECK1498; fmlC; JW1499" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="pseudogene; putative outer membrane protein" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0005017" /db_xref="UniProtKB/Swiss-Prot:P76137" /db_xref="EcoGene:EG13802" /db_xref="GeneID:946042" gene complement(1590334..1590536) /gene="yneL" /locus_tag="b1506" /gene_synonym="ECK1499; JW5244" /pseudo /db_xref="EcoGene:EG14360" /db_xref="GeneID:946063" CDS complement(join(1590334..1590426,1590426..1590536)) /gene="yneL" /locus_tag="b1506" /gene_synonym="ECK1499; JW5244" /note="pseudogene, AraC family" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0005019" /db_xref="UniProtKB/Swiss-Prot:P76138" /db_xref="EcoGene:EG14360" /db_xref="GeneID:946063" misc_feature complement(1590750..1590777) /note="Dif; site of action for XerCD chromosome resolvase; required for proper segregation of circular daughter chromosomes; Dif; recA-independent recombination site in terminus" gene complement(1590854..1592176) /gene="hipA" /locus_tag="b1507" /gene_synonym="ECK1500; JW1500" /db_xref="EcoGene:EG10443" /db_xref="GeneID:946064" CDS complement(1590854..1592176) /gene="hipA" /locus_tag="b1507" /gene_synonym="ECK1500; JW1500" /function="enzyme; Protein modification" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006259 - DNA metabolic process; GO:0009252 - peptidoglycan biosynthetic process" /note="persistence to inhibition of murein or DNA biosynthesis, DNA-binding regulator" /codon_start=1 /transl_table=11 /product="inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase" /protein_id="NP_416024.1" /db_xref="GI:16129466" /db_xref="ASAP:ABE-0005022" /db_xref="UniProtKB/Swiss-Prot:P23874" /db_xref="EcoGene:EG10443" /db_xref="GeneID:946064" /translation="MPKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLS LPLQRGNITSDAVFNFFDNLLPDSPIVRDRIVKRYHAKSRQPFDLLSEIGRDSVGAVT LIPEDETVTHPIMAWEKLTEARLEEVLTAYKADIPLGMIREENDFRISVAGAQEKTAL LRIGNDWCIPKGITPTTHIIKLPIGEIRQPNATLDLSQSVDNEYYCLLLAKELGLNVP DAEIIKAGNVRALAVERFDRRWNAERTVLLRLPQEDMCQTFGLPSSVKYESDGGPGIA RIMAFLMGSSEALKDRYDFMKFQVFQWLIGATDGHAKNFSVFIQAGGSYRLTPFYDII SAFPVLGGTGIHISDLKLAMGLNASKGKKTAIDKIYPRHFLATAKVLRFPEVQMHEIL SDFARMIPAALDNVKTSLPTDFPENVVTAVESNVLRLHGRLSREYGSK" gene complement(1592176..1592442) /gene="hipB" /locus_tag="b1508" /gene_synonym="ECK1501; JW1501" /db_xref="EcoGene:EG10442" /db_xref="GeneID:946065" CDS complement(1592176..1592442) /gene="hipB" /locus_tag="b1508" /gene_synonym="ECK1501; JW1501" /function="regulator; Murein sacculus, peptidoglycan" /experiment="N-terminus verified by Edman degradation: PMID 8021189" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006259 - DNA metabolic process; GO:0009252 - peptidoglycan biosynthetic process" /note="persistence to inhibition of murein or DNA biosynthesis; regulatory protein" /codon_start=1 /transl_table=11 /product="antitoxin of HipAB toxin-antitoxin system" /protein_id="NP_416025.1" /db_xref="GI:16129467" /db_xref="ASAP:ABE-0005024" /db_xref="UniProtKB/Swiss-Prot:P23873" /db_xref="EcoGene:EG10442" /db_xref="GeneID:946065" /translation="MMSFQKIYSPTQLANAMKLVRQQNGWTQSELAKKIGIKQATISN FENNPDNTTLTTFFKILQSLELSMTLCDAKNASPESTEQQNLEW" repeat_region 1592631..1592655 /note="REP123 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1592665..1597987) /gene="yneO" /locus_tag="b4696" /gene_synonym="ECK1503; JW1503; orfT; ydeK; ydeU" /pseudo /db_xref="EcoGene:EG11780" /db_xref="GeneID:7751623" CDS complement(join(1592665..1594125,1594127..1597987)) /gene="yneO" /locus_tag="b4696" /gene_synonym="ECK1503; JW1503; orfT; ydeK; ydeU" /note="pseudogene, AidA homolog" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0005037" /db_xref="UniProtKB/Swiss-Prot:P32051" /db_xref="EcoGene:EG11780" /db_xref="GeneID:7751623" gene complement(1598617..1600209) /gene="lsrK" /locus_tag="b1511" /gene_synonym="ECK1504; JW1504; ydeV" /db_xref="EcoGene:EG13804" /db_xref="GeneID:946069" CDS complement(1598617..1600209) /gene="lsrK" /locus_tag="b1511" /gene_synonym="ECK1504; JW1504; ydeV" /function="enzyme; Not classified" /codon_start=1 /transl_table=11 /product="autoinducer-2 (AI-2) kinase" /protein_id="NP_416028.3" /db_xref="GI:49176118" /db_xref="ASAP:ABE-0005041" /db_xref="UniProtKB/Swiss-Prot:P77432" /db_xref="EcoGene:EG13804" /db_xref="GeneID:946069" /translation="MARLFTLSESKYYLMALDAGTGSIRAVIFDLEGNQIAVGQAEWR HLAVPDVPGSMEFDLNKNWQLACECMRQALHNAGIAPEYIAAVSACSMREGIVLYNNE GAPIWACANVDARAAREVSELKELHNNTFENEVYRATGQTLALSAIPRLLWLAHHRSD IYRQASTITMISDWLAYMLSGELAVDPSNAGTTGLLDLTTRDWKPALLDMAGLRADIL SPVKETGTLLGVVSSQAAELCGLKAGTPVVVGGGDVQLGCLGLGVVRPAQTAVLGGTF WQQVVNLAAPVTDPEMNVRVNPHVIPGMVQAESISFFTGLTMRWFRDAFCAEEKLIAE RLGIDTYTLLEEMASRVPPGSWGVMPIFSDRMRFKTWYHAAPSFINLSIDPDKCNKAT LFRALEENAAIVSACNLQQIADFSNIHPSSLVFAGGGSKGKLWSQILADVSGLPVNIP VVKEATALGCAIAAGVGAGIFSSMAETGERLVRWERTHTPDPEKHELYQDSRDKWQAV YQDQLGLVDHGLTTSLWKAPGL" gene complement(1600288..1601241) /gene="lsrR" /locus_tag="b1512" /gene_synonym="ECK1505; JW1505; ydeW" /db_xref="EcoGene:EG13805" /db_xref="GeneID:946070" CDS complement(1600288..1601241) /gene="lsrR" /locus_tag="b1512" /gene_synonym="ECK1505; JW1505; ydeW" /function="regulator; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_function="GO:0016564 - transcription repressor activity" /codon_start=1 /transl_table=11 /product="lsr operon transcriptional repressor" /protein_id="NP_416029.1" /db_xref="GI:16129471" /db_xref="ASAP:ABE-0005045" /db_xref="UniProtKB/Swiss-Prot:P76141" /db_xref="EcoGene:EG13805" /db_xref="GeneID:946070" /translation="MTINDSAISEQGMCEEEQVARIAWFYYHDGLTQSEISDRLGLTR LKVSRLLEKGHQSGIIRVQINSRFEGCLEYETQLRRQFSLQHVRVIPGLADADVGGRL GIGAAHMLMSLLQPQQMLAIGFGEATMNTLQRLSGFISSQQIRLVTLSGGVGSYMTGI GQLNAACSVNIIPAPLRASSADIARTLKNENCVKDVLLAAQAADVAIVGIGAVSQQDD ATIIRSGYISQGEQLMIGRKGAVGDILGYFFDAKGDVVTNIKIHNELIGLPLSALKTI PVRVGVAGGENKAEAIAAAMKGGYINALVTDQDTAAAILRS" gene 1601490..1603025 /gene="lsrA" /locus_tag="b1513" /gene_synonym="ECK1506; ego; JW1506; ydeX" /db_xref="EcoGene:EG13806" /db_xref="GeneID:945680" CDS 1601490..1603025 /gene="lsrA" /locus_tag="b1513" /gene_synonym="ECK1506; ego; JW1506; ydeX" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0005737 - cytoplasm" /note="autoinducer-2 (AI-2)-transporting ATPase" /codon_start=1 /transl_table=11 /product="autoinducer 2 import ATP-binding protein" /protein_id="NP_416030.1" /db_xref="GI:16129472" /db_xref="ASAP:ABE-0005056" /db_xref="UniProtKB/Swiss-Prot:P77257" /db_xref="EcoGene:EG13806" /db_xref="GeneID:945680" /translation="MQTSDTRALPLLCARSVYKQYSGVNVLKGIDFTLHQGEVHALLG GNGAGKSTLMKIIAGITPADSGTLEIEGNNYVRLTPVHAHQLGIYLVPQEPLLFPSLS IKENILFGLAKKQLSMQKMKNLLAALGCQFDLHSLAGSLDVADRQMVEILRGLMRDSR ILILDEPTASLTPAETERLFSRLQELLATGVGIVFISHKLPEIRQIADRISVMRDGTI ALSGKTSELSTDDIIQAITPAVREKSLSASQKLWLELPGNRPQHAAGTPVLTLENLTG EGFRNVSLTLNAGEILGLAGLVGAGRTELAETLYGLRTLRGGRIMLNGKEINKLSTGE RLLRGLVYLPEDRQSSGLNLDASLAWNVCALTHNLRGFWAKTAKDNATLERYRRALNI KFNQPEQAARTLSGGNQQKILIAKCLEASPQVLIVDEPTRGVDVSARNDIYQLLRSIA AQNVAVLLISSDLEEIELMADRVYVMHQGEITHSALTERDINVETIMRVAFGDSQRQE ASC" gene 1603019..1604047 /gene="lsrC" /locus_tag="b1514" /gene_synonym="ECK1507; JW1507; ydeY" /db_xref="EcoGene:EG13807" /db_xref="GeneID:946105" CDS 1603019..1604047 /gene="lsrC" /locus_tag="b1514" /gene_synonym="ECK1507; JW1507; ydeY" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="autoinducer-2 (AI-2)-transporting membrane channel protein; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="autoinducer 2 import system permease protein" /protein_id="NP_416031.1" /db_xref="GI:16129473" /db_xref="ASAP:ABE-0005059" /db_xref="UniProtKB/Swiss-Prot:P77672" /db_xref="EcoGene:EG13807" /db_xref="GeneID:946105" /translation="MLKFIQNNREITALLAVVLLFVLPGFLDRQYLSVQTLTMVYSSA QILILLAMGATLVMLTRNIDVSVGSITGMCAVLLGMLLNAGYSLPVACVATLLLGLLA GFFNGVLVAWLKIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPLLLGVS AIGWLTIILVAFMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMA ALAGIVFASQIGFIPNQTGTGLEMKAIAACVLGGISLLGGSGAIIGAVLGAWFLTQID SVLVLLRIPAWWNDFIAGLVLLAVLVFDGRLRCALERNLRRQKYARFMTPPPSVKPAS SGKKREAA" gene 1604047..1605039 /gene="lsrD" /locus_tag="b1515" /gene_synonym="ECK1508; JW1508; ydeZ" /db_xref="EcoGene:EG13808" /db_xref="GeneID:946264" CDS 1604047..1605039 /gene="lsrD" /locus_tag="b1515" /gene_synonym="ECK1508; JW1508; ydeZ" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="autoinducer-2 (AI-2)-transporting membrane channel protein; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="autoinducer 2 import system permease protein" /protein_id="NP_416032.1" /db_xref="GI:16129474" /db_xref="ASAP:ABE-0005061" /db_xref="UniProtKB/Swiss-Prot:P0AFS1" /db_xref="EcoGene:EG13808" /db_xref="GeneID:946264" /translation="MRIRYGWELALAALLVIEIVAFGAINPRMLDLNMLLFSTSDFIC IGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLAILLTLLLGALCGL INAGLIIYTKVNPLVITLGTLYLFAGSALLLSGMAGATGYEGIGGFPMAFTDFANLDV LGLPVPLIIFLICLLVFWLWLHKTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMT GLASAVAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTAIAVLLV GYLQQGLQMAGVPNQVSSALSGALLIVVVVGRSVSLHRQQIKEWLARRANNPLP" gene 1605051..1606073 /gene="lsrB" /locus_tag="b1516" /gene_synonym="ECK1509; JW1509; yneA" /db_xref="EcoGene:EG13809" /db_xref="GeneID:945418" CDS 1605051..1606073 /gene="lsrB" /locus_tag="b1516" /gene_synonym="ECK1509; JW1509; yneA" /function="putative regulator; Not classified" /GO_component="GO:0042597 - periplasmic space" /note="periplasmic autoinducer-2 (AI-2) binding protein; periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="autoinducer 2-binding protein" /protein_id="NP_416033.1" /db_xref="GI:16129475" /db_xref="ASAP:ABE-0005063" /db_xref="UniProtKB/Swiss-Prot:P76142" /db_xref="EcoGene:EG13809" /db_xref="GeneID:945418" /translation="MTLHRFKKIALLSALGIAAISMNVQAAERIAFIPKLVGVGFFTS GGNGAQQAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPAL KRAMQRGVRVLTWDSDTKPECRSYYINQGTPAQLGGMLVDMAARQVNKDKAKVAFFYS SPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDATKSLQTAEGILKAYSDLDAII APDANALPAAAQAAENLKNDKVAIVGFSTPNVMRPYVERGTVKEFGLWDVVQQGKISV YVADALLKKGSMKTGDKLDIKGVGQVEVSPNSVQGYDYEADGNGIVLLPERVIFNKEN IGKYDF" gene 1606100..1606975 /gene="lsrF" /locus_tag="b1517" /gene_synonym="ECK1510; JW1510; yneB" /db_xref="EcoGene:EG13810" /db_xref="GeneID:946071" CDS 1606100..1606975 /gene="lsrF" /locus_tag="b1517" /gene_synonym="ECK1510; JW1510; yneB" /function="enzyme; Degradation of small molecules: Carbon compounds" /codon_start=1 /transl_table=11 /product="putative autoinducer-2 (AI-2) aldolase" /protein_id="NP_416034.1" /db_xref="GI:16129476" /db_xref="ASAP:ABE-0005065" /db_xref="UniProtKB/Swiss-Prot:P76143" /db_xref="EcoGene:EG13810" /db_xref="GeneID:946071" /translation="MADLDDIKDGKDFRTDQPQKNIPFTLKGCGALDWGMQSRLSRIF NPKTGKTVMLAFDHGYFQGPTTGLERIDINIAPLFEHADVLMCTRGILRSVVPPATNR PVVLRASGANSILAELSNEAVALSMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLV DAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTYYVEKGFERIVAGC PVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQAVVHHN ETADRAYELYLSEKQ" gene 1606999..1607289 /gene="lsrG" /locus_tag="b1518" /gene_synonym="ECK1511; JW1511; yneC" /db_xref="EcoGene:EG13811" /db_xref="GeneID:946073" CDS 1606999..1607289 /gene="lsrG" /locus_tag="b1518" /gene_synonym="ECK1511; JW1511; yneC" /function="enzyme; Degradation of small molecules: Carbon compounds" /codon_start=1 /transl_table=11 /product="autoinducer-2 (AI-2) degrading protein LsrG" /protein_id="NP_416035.1" /db_xref="GI:16129477" /db_xref="ASAP:ABE-0005067" /db_xref="UniProtKB/Swiss-Prot:P64461" /db_xref="EcoGene:EG13811" /db_xref="GeneID:946073" /translation="MHVTLVEINVHEDKVDEFIEVFRQNHLGSVQEEGNLRFDVLQDP EVNSRFYIYEAYKDEDAVAFHKTTPHYKTCVAKLESLMTGPRKKRLFNGLMP" gene 1607346..1608104 /gene="tam" /locus_tag="b1519" /gene_synonym="ECK1512; JW1512; lsrE; yneD" /db_xref="EcoGene:EG13812" /db_xref="GeneID:946074" CDS 1607346..1608104 /gene="tam" /locus_tag="b1519" /gene_synonym="ECK1512; JW1512; lsrE; yneD" /EC_number="2.1.1.144" /function="enzyme; Detoxification" /GO_component="GO:0005737 - cytoplasm" /note="trans-aconitate 2-methyltransferase" /codon_start=1 /transl_table=11 /product="trans-aconitate methyltransferase" /protein_id="NP_416036.1" /db_xref="GI:16129478" /db_xref="ASAP:ABE-0005070" /db_xref="UniProtKB/Swiss-Prot:P76145" /db_xref="EcoGene:EG13812" /db_xref="GeneID:946074" /translation="MSDWNPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGN STALLQQRWPAARITGIDSSPAMIAEARSALPDCQFVEADIRNWQPVQALDLIFANAS LQWLPDHYELFPHLVSLLNPQGVLAVQMPDNWLEPTHVLMREVAWEQNYPDRGREPLA GVHAYYDILSEAGCEVDIWRTTYYHQMPSHQAIIDWVTATGLRPWLQDLTESEQQLFL KRYHQMLEEQYPLQENGQILLAFPRLFIVARRME" gene complement(1608108..1609022) /gene="yneE" /locus_tag="b1520" /gene_synonym="ECK1513; JW5245" /db_xref="EcoGene:EG13813" /db_xref="GeneID:946188" CDS complement(1608108..1609022) /gene="yneE" /locus_tag="b1520" /gene_synonym="ECK1513; JW5245" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="bestrophin family putative inner membrane protein" /protein_id="NP_416037.2" /db_xref="GI:90111287" /db_xref="ASAP:ABE-0005072" /db_xref="UniProtKB/Swiss-Prot:P76146" /db_xref="EcoGene:EG13813" /db_xref="GeneID:946188" /translation="MIVRPQQHWLRRIFVWHGSVLSKISSRLLLNFLFSIAVIFMLPW YTHLGIKFTLAPFSILGVAIAIFLGFRNNAGYARYVEARKLWGQLMIASRSLLREVKT TLPDSASVREFARLQIAFAHCLRMTLRKQPQAEVLAHYLKTEDLQRVLASNSPANRIL LIMGEWLAVQRRNGQLSDILFISLNDRLNDISAVLAGCERIAYTPIPFAYTLILHRTV YLFCIMLPFALVVDLHYMTPFISVLISYTFISLDCLAEELEDPFGTENNDLPLDAICN AIEIDLLQMNDEAEIPAKILPDRHYQLT" gene complement(1609229..1610680) /gene="uxaB" /locus_tag="b1521" /gene_synonym="ECK1514; JW1514" /db_xref="EcoGene:EG11065" /db_xref="GeneID:945542" CDS complement(1609229..1610680) /gene="uxaB" /locus_tag="b1521" /gene_synonym="ECK1514; JW1514" /EC_number="1.1.1.58" /function="enzyme; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 3525742" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="altronate oxidoreductase" /codon_start=1 /transl_table=11 /product="altronate oxidoreductase, NAD-dependent" /protein_id="YP_025302.1" /db_xref="GI:49176119" /db_xref="ASAP:ABE-0005076" /db_xref="UniProtKB/Swiss-Prot:P0A6L7" /db_xref="EcoGene:EG11065" /db_xref="GeneID:945542" /translation="MKTLNRRDFPGAQYPERIIQFGEGNFLRAFVDWQIDLLNEHTDL NSGVVVVRPIETSFPPSLSTQDGLYTTIIRGLNEKGEAVSDARLIRSVNREISVYSEY DEFLKLAHNPEMRFVFSNTTEAGISYHAGDKFDDAPAVSYPAKLTRLLFERFSHFNGA LDKGWIIIPCELIDYNGDALRELVLRYAQEWALPEAFIQWLDQANSFCSTLVDRIVTG YPRDEVAKLEEELGYHDGFLDTAEHFYLFVIQGPKSLATELRLDKYPLNVLIVDDIKP YKERKVAILNGAHTALVPVAFQAGLDTVGEAMNDAEICAFVEKAIYEEIIPVLDLPRD ELESFASAVTGRFRNPYIKHQLLSIALNGMTKFRTRILPQLLAGQKANGTLPARLTFA LAALIAFYRGERNGETYPVQDDAHWLERYQQLWSQHRDRVIGTQELVAIVLAEKDHWE QDLTQVPGLVEQVANDLDAILEKGMREAVRPLC" gene complement(1610907..1611854) /gene="yneF" /locus_tag="b1522" /gene_synonym="ECK1515; JW5825" /db_xref="EcoGene:EG13814" /db_xref="GeneID:947422" CDS complement(1610907..1611854) /gene="yneF" /locus_tag="b1522" /gene_synonym="ECK1515; JW5825" /codon_start=1 /transl_table=11 /product="putative membrane-bound diguanylate cyclase" /protein_id="NP_416039.1" /db_xref="GI:16129481" /db_xref="ASAP:ABE-0005081" /db_xref="UniProtKB/Swiss-Prot:P76147" /db_xref="EcoGene:EG13814" /db_xref="GeneID:947422" /translation="MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALI VSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISV GSPFSIPQMFSARLGIATMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGL YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLV ARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASY LTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV" gene complement(1611966..1612325) /gene="yneG" /locus_tag="b1523" /gene_synonym="ECK1516; JW1516" /db_xref="EcoGene:EG13815" /db_xref="GeneID:946171" CDS complement(1611966..1612325) /gene="yneG" /locus_tag="b1523" /gene_synonym="ECK1516; JW1516" /codon_start=1 /transl_table=11 /product="DUF4186 family protein" /protein_id="NP_416040.1" /db_xref="GI:16129482" /db_xref="ASAP:ABE-0005084" /db_xref="UniProtKB/Swiss-Prot:P76148" /db_xref="EcoGene:EG13815" /db_xref="GeneID:946171" /translation="MQSLDPLFARLSRSKFRSRFRLGMKERQYCLEKGAPVIEQHAAD FVAKRLAPALPANDGKQTPMRGHPVFIAQHATATCCRGCLAKWHNIPQGVSLSEEQQR YIVAVIYHWLVVQMNQP" gene complement(1612325..1613251) /gene="glsB" /locus_tag="b1524" /gene_synonym="ECK1517; glsA2; JW1517; yneH" /db_xref="EcoGene:EG13816" /db_xref="GeneID:944973" CDS complement(1612325..1613251) /gene="glsB" /locus_tag="b1524" /gene_synonym="ECK1517; glsA2; JW1517; yneH" /function="enzyme; l-glutamine catabolism" /GO_process="GO:0009063 - cellular amino acid catabolic process" /note="putative glutaminase" /codon_start=1 /transl_table=11 /product="glutaminase 2" /protein_id="NP_416041.1" /db_xref="GI:16129483" /db_xref="ASAP:ABE-0005086" /db_xref="UniProtKB/Swiss-Prot:P0A6W0" /db_xref="EcoGene:EG13816" /db_xref="GeneID:944973" /translation="MAVAMDNAILENILRQVRPLIGQGKVADYIPALATVDGSRLGIA ICTVDGQLFQAGDAQERFSIQSISKVLSLVVAMRHYSEEEIWQRVGKDPSGSPFNSLV QLEMEQGIPRNPFINAGALVVCDMLQGRLSAPRQRMLEVVRGLSGVSDISYDTVVARS EFEHSARNAAIAWLMKSFGNFHHDVTTVLQNYFHYCALKMSCVELARTFVFLANQGKA IHIDEPVVTPMQARQINALMATSGMYQNAGEFAWRVGLPAKSGVGGGIVAIVPHEMAI AVWSPELDDAGNSLAGIAVLEQLTKQLGRSVY" gene complement(1613315..1614703) /gene="sad" /locus_tag="b1525" /gene_synonym="ECK1518; JW5247; yneI" /db_xref="EcoGene:EG13817" /db_xref="GeneID:947440" CDS complement(1613315..1614703) /gene="sad" /locus_tag="b1525" /gene_synonym="ECK1518; JW5247; yneI" /EC_number="1.2.1.24" /function="putative enzyme; Not classified" /note="putative aldehyde dehydrogenase" /codon_start=1 /transl_table=11 /product="succinate semialdehyde dehydrogenase, NAD(P)+-dependent" /protein_id="NP_416042.2" /db_xref="GI:90111288" /db_xref="ASAP:ABE-0005092" /db_xref="UniProtKB/Swiss-Prot:P76149" /db_xref="EcoGene:EG13817" /db_xref="GeneID:947440" /translation="MTITPATHAISINPATGEQLSVLPWAGADDIENALQLAAAGFRD WRETNIDYRAEKLRDIGKALRARSEEMAQMITREMGKPINQARAEVAKSANLCDWYAE HGPAMLKAEPTLVENQQAVIEYRPLGTILAIMPWNFPLWQVMRGAVPIILAGNGYLLK HAPNVMGCAQLIAQVFKDAGIPQGVYGWLNADNDGVSQMIKDSRIAAVTVTGSVRAGA AIGAQAGAALKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFII EEGIASAFTERFVAAAAALKMGDPRDEENALGPMARFDLRDELHHQVEKTLAQGARLL LGGEKMAGAGNYYPPTVLANVTPEMTAFREEMFGPVAAITIAKDAEHALELANDSEFG LSATIFTTDETQARQMAARLECGGVFINGYCASDARVAFGGVKKSGFGRELSHFGLHE FCNIQTVWKDRI" gene 1614804..1615685 /gene="yneJ" /locus_tag="b1526" /gene_synonym="ECK1519; JW1519" /db_xref="EcoGene:EG13818" /db_xref="GeneID:946079" CDS 1614804..1615685 /gene="yneJ" /locus_tag="b1526" /gene_synonym="ECK1519; JW1519" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator" /protein_id="NP_416043.1" /db_xref="GI:16129485" /db_xref="ASAP:ABE-0005096" /db_xref="UniProtKB/Swiss-Prot:P77309" /db_xref="EcoGene:EG13818" /db_xref="GeneID:946079" /translation="MDLTQLEMFNAVAEAGSITQAAAKVHRVPSNLTTRLRQLETELG VDLFIRENQRLRLSPAGHNFLRYSQQILALVDEARSVVAGDEPQGLFSLGSLESTAAV RIPATLAEFNRRYPKIQFSLSTGPSGTMLDGVLEGKLNAAFIDGPINHTAIDGIPVYR EELMIVTPQGYAPVTRASQVNGSNIYAFRANCSYRRHFESWFHADGAAPGTIHEMESY HGMLACVIAGAGIALIPRSMLESMPGHHQVEAWPLAEQWRWLTTWLVWRRGAKTRPLE AFIQLLDVPDSARQGYQ" gene 1615763..1616878 /gene="yneK" /locus_tag="b1527" /gene_synonym="ECK1520; JW1520" /db_xref="EcoGene:EG13819" /db_xref="GeneID:946080" CDS 1615763..1616878 /gene="yneK" /locus_tag="b1527" /gene_synonym="ECK1520; JW1520" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416044.1" /db_xref="GI:16129486" /db_xref="ASAP:ABE-0005100" /db_xref="UniProtKB/Swiss-Prot:P76150" /db_xref="EcoGene:EG13819" /db_xref="GeneID:946080" /translation="MVTPVSISNYISLPDDFPVRNIAPQVKEVLKDFIDALSTIICNE EWRTSLNINSATKKIFNNLDNLSYIQRTSFRGNDTLYNEKVQFKLTYPARNGRHKENI EFQVVINLSPIYLDNFRHDGEINIFCAPNPKPVTMGRVFQTGVERVLFLFLNDFIEQF PMINPGVPIKRAHTPHIEPLPSDHHTAADYLRQFDLLVLNFISRGNFVILPRLWNNSE VHRWFVNKDPNLITAILDITDSELKEDLLQSLMDSLGSNKHVLPEVCICFLSLLAEQE SPHFQNLFLFFANMLLHYHQFMNPNESDLNDVLMPASLSDDKIIKHMARRTLKLFVKN ETPPKVTHEDLVKNRPRSPVRPPIPATAKTPDLPERH" gene 1617028..1618218 /gene="ydeA" /locus_tag="b1528" /gene_synonym="ECK1521; JW1521; sotB" /db_xref="EcoGene:EG11636" /db_xref="GeneID:947218" CDS 1617028..1618218 /gene="ydeA" /locus_tag="b1528" /gene_synonym="ECK1521; JW1521; sotB" /function="transport; Transport of small molecules: sugars" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0015524 - L-arabinose/beta-D-thiogalactopyranoside:hydrogen antiporter activity" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein (MFS family)" /codon_start=1 /transl_table=11 /product="arabinose efflux transporter, arabinose-inducible" /protein_id="NP_416045.1" /db_xref="GI:16129487" /db_xref="ASAP:ABE-0005103" /db_xref="UniProtKB/Swiss-Prot:P31122" /db_xref="EcoGene:EG11636" /db_xref="GeneID:947218" /translation="MTTNTVSRKVAWLRVVTLAVAAFIFNTTEFVPVGLLSDIAQSFH MQTAQVGIMLTIYAWVVALMSLPFMLMTSQVERRKLLICLFVVFIASHVLSFLSWSFT VLVISRIGVAFAHAIFWSITASLAIRMAPAGKRAQALSLIATGTALAMVLGLPLGRIV GQYFGWRMTFFAIGIGALITLLCLIKLLPLLPSEHSGSLKSLPLLFRRPALMSIYLLT VVVVTAHYTAYSYIEPFVQNIAGFSANFATALLLLLGGAGIIGSVIFGKLGNQYASAL VSTAIALLLVCLALLLPAANSEIHLGVLSIFWGIAMMIIGLGMQVKVLALAPDATDVA MALFSGIFNIGIGAGALVGNQVSLHWSMSMIGYVGAVPAFAALIWSIIIFRRWPVTLE EQTQ" gene complement(1618243..1618908) /gene="marC" /locus_tag="b1529" /gene_synonym="ECK1522; JW1522; ydeB; ydeC" /db_xref="EcoGene:EG11637" /db_xref="GeneID:947132" CDS complement(1618243..1618908) /gene="marC" /locus_tag="b1529" /gene_synonym="ECK1522; JW1522; ydeB; ydeC" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="UPF0056 family inner membrane protein" /protein_id="NP_416046.1" /db_xref="GI:16129488" /db_xref="ASAP:ABE-0005106" /db_xref="UniProtKB/Swiss-Prot:P0AEY1" /db_xref="EcoGene:EG11637" /db_xref="GeneID:947132" /translation="MLDLFKAIGLGLVVLLPLANPLTTVALFLGLAGNMNSAERNRQS LMASVYVFAIMMVAYYAGQLVMDTFGISIPGLRIAGGLIVAFIGFRMLFPQQKAIDSP EAKSKSEELEDEPSANIAFVPLAMPSTAGPGTIAMIISSASTVRQSSTFADWVLMVAP PLIFFLVAVILWGSLRSSGAIMRLVGKGGIEAISRLMGFLLVCMGVQFIINGILEIIK TYH" gene 1619120..1619554 /gene="marR" /locus_tag="b1530" /gene_synonym="cfxB; ECK1523; inaR; JW5248; soxQ" /db_xref="EcoGene:EG11435" /db_xref="GeneID:945825" CDS 1619120..1619554 /gene="marR" /locus_tag="b1530" /gene_synonym="cfxB; ECK1523; inaR; JW5248; soxQ" /function="regulator; Drug/analog sensitivity" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0042493 - response to drug; GO:0006350 - transcription" /note="multiple antibiotic resistance protein; repressor of mar operon" /codon_start=1 /transl_table=11 /product="transcriptional repressor of multiple antibiotic resistance" /protein_id="NP_416047.4" /db_xref="GI:90111289" /db_xref="ASAP:ABE-0005110" /db_xref="UniProtKB/Swiss-Prot:P27245" /db_xref="EcoGene:EG11435" /db_xref="GeneID:945825" /translation="MKSTSDLFNEIIPLGRLIHMVNQKKDRLLNEYLSPLDITAAQFK VLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTT GGAAICEQCHQLVGQDLHQELTKNLTADEVATLEYLLKKVLP" gene 1619574..1619957 /gene="marA" /locus_tag="b1531" /gene_synonym="cfxB; ECK1524; inaR; JW5249; nfxC; norB; soxQ" /db_xref="EcoGene:EG11434" /db_xref="GeneID:947613" CDS 1619574..1619957 /gene="marA" /locus_tag="b1531" /gene_synonym="cfxB; ECK1524; inaR; JW5249; nfxC; norB; soxQ" /function="regulator; Drug/analog sensitivity" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0042493 - response to drug; GO:0006350 - transcription; GO:0006805 - xenobiotic metabolic process" /note="multiple antibiotic resistance; transcriptional activator of defense systems" /codon_start=1 /transl_table=11 /product="multiple antibiotic resistance transcriptional regulator" /protein_id="NP_416048.2" /db_xref="GI:90111290" /db_xref="ASAP:ABE-0005112" /db_xref="UniProtKB/Swiss-Prot:P0ACH5" /db_xref="EcoGene:EG11434" /db_xref="GeneID:947613" /translation="MSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQR MFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDV PPHKYRMTNMQGESRFLHPLNHYNS" gene 1619989..1620207 /gene="marB" /locus_tag="b1532" /gene_synonym="ECK1525; JW1525" /db_xref="EcoGene:EG11599" /db_xref="GeneID:946184" CDS 1619989..1620207 /gene="marB" /locus_tag="b1532" /gene_synonym="ECK1525; JW1525" /function="putative transport; Drug/analog sensitivity" /GO_process="GO:0042493 - response to drug; GO:0006805 - xenobiotic metabolic process" /note="multiple antibiotic resistance protein" /codon_start=1 /transl_table=11 /product="periplasmic mar operon regulator" /protein_id="NP_416049.1" /db_xref="GI:16129491" /db_xref="ASAP:ABE-0005114" /db_xref="UniProtKB/Swiss-Prot:P31121" /db_xref="EcoGene:EG11599" /db_xref="GeneID:946184" /translation="MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEH PPFDLNHMGTGSDKSDALGVPYYNQHAM" gene complement(1620238..1621137) /gene="eamA" /locus_tag="b1533" /gene_synonym="ECK1526; JW5250; ydeD" /db_xref="EcoGene:EG11639" /db_xref="GeneID:946081" CDS complement(1620238..1621137) /gene="eamA" /locus_tag="b1533" /gene_synonym="ECK1526; JW5250; ydeD" /note="amino acid metabolite efflux pump" /codon_start=1 /transl_table=11 /product="cysteine and O-acetyl-L-serine efflux system" /protein_id="NP_416050.4" /db_xref="GI:90111291" /db_xref="ASAP:ABE-0005116" /db_xref="UniProtKB/Swiss-Prot:P31125" /db_xref="EcoGene:EG11639" /db_xref="GeneID:946081" /translation="MSRKDGVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVA FPAIFFVARPKVPLNLLLGYGLTISFAQFAFLFCAINFGMPAGLASLVLQAQAFFTIM LGAFTFGERLHGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNI FNKKIMSHSTRPAVMSLVIWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLM YLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAV LIMTGLYINVFGLRWRKAVKVGS" gene 1621332..1622519 /gene="ydeE" /locus_tag="b1534" /gene_synonym="ECK1527; JW1527; ydeF" /db_xref="EcoGene:EG11640" /db_xref="GeneID:946083" CDS 1621332..1622519 /gene="ydeE" /locus_tag="b1534" /gene_synonym="ECK1527; JW1527; ydeF" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="NP_416051.1" /db_xref="GI:16129493" /db_xref="ASAP:ABE-0005121" /db_xref="UniProtKB/Swiss-Prot:P31126" /db_xref="EcoGene:EG11640" /db_xref="GeneID:946083" /translation="MNLSLRRSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDL IGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAITLVNNVTLVVLF FALINCAYSVFATVLKAWFADNLSSTSKTKIFSINYTMLNIGWTIGPPLGTLLVMQSI NLPFWLAAICSAFPMLFIQIWVKRSEKIIATETGSVWSPKVLLQDKALLWFTCSGFLA SFVSGAFASCISQYVMVIADGDFAEKVVAVVLPVNAAMVVTLQYSVGRRLNPANIRAL MTAGTLCFVIGLVGFIFSGNSLLLWGMSAAVFTVGEIIYAPGEYMLIDHIAPPEMKAS YFSAQSLGWLGAAINPLVSGVVLTSLPPSSLFVILALVIIAAWVLMLKGIRARPWGQP ALC" gene 1622646..1622741 /gene="yneM" /locus_tag="b4599" /gene_synonym="ECK4409" /db_xref="EcoGene:EG14395" /db_xref="GeneID:5061497" CDS 1622646..1622741 /gene="yneM" /locus_tag="b4599" /gene_synonym="ECK4409" /codon_start=1 /transl_table=11 /product="inner membrane-associated protein" /protein_id="YP_001165319.1" /db_xref="GI:145698263" /db_xref="UniProtKB/Swiss-Prot:A5A616" /db_xref="EcoGene:EG14395" /db_xref="GeneID:5061497" /translation="MLGNMNVFMAVLGIILFSGFLAAYFSHKWDD" gene complement(1622817..1622914) /gene="mgrR" /locus_tag="b4698" /gene_synonym="ECK4510" /db_xref="EcoGene:EG31184" /db_xref="GeneID:8764967" ncRNA complement(1622817..1622914) /ncRNA_class="antisense_RNA" /gene="mgrR" /locus_tag="b4698" /gene_synonym="ECK4510" /product="sRNA antisense regulator down regulates YgdQ and EptB, PhoPQ-regulated, Hfq-dependent; affects sensitivity to antimicrobial peptides" /db_xref="ASAP:ABE-0285266" /db_xref="EcoGene:EG31184" /db_xref="GeneID:8764967" gene complement(1622960..1623850) /gene="dgcZ" /locus_tag="b1535" /gene_synonym="ECK1528; JW1528; ydeG; ydeH" /db_xref="EcoGene:EG11643" /db_xref="GeneID:946075" CDS complement(1622960..1623850) /gene="dgcZ" /locus_tag="b1535" /gene_synonym="ECK1528; JW1528; ydeG; ydeH" /codon_start=1 /transl_table=11 /product="diguanylate cyclase, zinc-sensing" /protein_id="NP_416052.1" /db_xref="GI:16129494" /db_xref="ASAP:ABE-0005123" /db_xref="UniProtKB/Swiss-Prot:P31129" /db_xref="EcoGene:EG11643" /db_xref="GeneID:946075" /translation="MIKKTTEIDAILLNLNKAIDAHYQWLVSMFHSVVARDASKPEIT DNHSYGLCQFGRWIDHLGPLDNDELPYVRLMDSAHQHMHNCGRELMLAIVENHWQDAH FDAFQEGLLSFTAALTDYKIYLLTIRSNMDVLTGLPGRRVLDESFDHQLRNAEPLNLY LMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGGEEFIIIVKAAN DEEACRAGVRICQLVDNHAITHSEGHINITVTAGVSRAFPEEPLDVVIGRADRAMYEG KQTGRNRCMFIDEQNVINRV" gene complement(1624105..1624497) /gene="ydeI" /locus_tag="b1536" /gene_synonym="ECK1529; JW1529" /db_xref="EcoGene:EG11644" /db_xref="GeneID:946068" CDS complement(1624105..1624497) /gene="ydeI" /locus_tag="b1536" /gene_synonym="ECK1529; JW1529" /codon_start=1 /transl_table=11 /product="hydrogen peroxide resistance OB fold protein; putative periplasmic protein" /protein_id="NP_416054.1" /db_xref="GI:16129495" /db_xref="ASAP:ABE-0005127" /db_xref="UniProtKB/Swiss-Prot:P31130" /db_xref="EcoGene:EG11644" /db_xref="GeneID:946068" /translation="MKFQAIVLASFLVMPYALADDQGGLKQDAAPPPPHAIEDGYRGT DDAKKMTVDFAKTMHDGASVSLRGNLISHKGEDRYVFRDKSGEINVVIPAAVFDGREV QPDQMINISGSLDKKSAPAVVRVTHLQK" gene 1624773..1625291 /gene="ydeJ" /locus_tag="b1537" /gene_synonym="ECK1530; JW1530" /db_xref="EcoGene:EG11645" /db_xref="GeneID:946067" CDS 1624773..1625291 /gene="ydeJ" /locus_tag="b1537" /gene_synonym="ECK1530; JW1530" /codon_start=1 /transl_table=11 /product="inactive PncC family protein" /protein_id="NP_416055.1" /db_xref="GI:16129496" /db_xref="ASAP:ABE-0005131" /db_xref="UniProtKB/Swiss-Prot:P31131" /db_xref="EcoGene:EG11645" /db_xref="GeneID:946067" /translation="MNINRDKIVQLVDTDTIENLTSALSQRLIADQLRLTTAESCTGG KLASALCAAEDTPKFYGAGFVTFTDQAKMKILSVSQQSLERYSAVSEKVAAEMATGAI ERADADVSIAITGYGGPEGGEDGTPAGTVWFAWHIKGQNYTAVMHFAGDCETVLALAV RFALAQLLQLLL" gene complement(1625335..1627380) /gene="dcp" /locus_tag="b1538" /gene_synonym="ECK1531; JW1531" /db_xref="EcoGene:EG10212" /db_xref="GeneID:946084" CDS complement(1625335..1627380) /gene="dcp" /locus_tag="b1538" /gene_synonym="ECK1531; JW1531" /EC_number="3.4.15.5" /function="enzyme; Degradation of proteins, peptides, glyco" /codon_start=1 /transl_table=11 /product="dipeptidyl carboxypeptidase II" /protein_id="NP_416056.1" /db_xref="GI:16129497" /db_xref="ASAP:ABE-0005133" /db_xref="UniProtKB/Swiss-Prot:P24171" /db_xref="EcoGene:EG10212" /db_xref="GeneID:946084" /translation="MTTMNPFLVQSTLPYLAPHFDQIANHHYRPAFDEGMQQKRAEIA AIALNPQMPDFNNTILALEQSGELLTRVTSVFFAMTAAHTNDELQRLDEQFSAELAEL ANDIYLNGELFARVDAVWQRRESLGLDSESIRLVEVIHQRFVLAGAKLAQADKAKLKV LNTEAATLTSQFNQRLLAANKSGGLVVNDIAQLAGMSEQEIALAAEAAREKGLDNKWL IPLLNTTQQPALAEMRDRATREKLFIAGWTRAEKNDANDTRAIIQRLVEIRAQQATLL GFPHYAAWKIADQMAKTPEAALNFMREIVPAARQRASDELASIQAVIDKQQGGFSAQP WDWAFYAEQVRREKFDLDEAQLKPYFELNTVLNEGVFWTANQLFGIKFVERFDIPVYH PDVRVWEIFDHNGVGLALFYGDFFARDSKSGGAWMGNFVEQSTLNKTHPVIYNVCNYQ KPAAGEPALLLWDDVITLFHEFGHTLHGLFARQRYATLSGTNTPRDFVEFPSQINEHW ATHPQVFARYARHYQSGAAMPDELQQKMRNASLFNKGYEMSELLSAALLDMRWHCLEE NEAMQDVDDFELRALVAENMDLPAIPPRYRSSYFAHIFGGGYAAGYYAYLWTQMLADD GYQWFVEQGGLTRENGLRFREAILSRGNSEDLERLYRQWRGKAPKIMPMLQHRGLNI" gene 1627517..1628263 /gene="ydfG" /locus_tag="b1539" /gene_synonym="ECK1532; JW1532" /db_xref="EcoGene:EG12345" /db_xref="GeneID:946085" CDS 1627517..1628263 /gene="ydfG" /locus_tag="b1539" /gene_synonym="ECK1532; JW1532" /function="putative enzyme; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 9298646" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="NADP-dependent 3-hydroxy acid dehydrogenase; malonic semialdehyde reductase" /protein_id="NP_416057.1" /db_xref="GI:16129498" /db_xref="ASAP:ABE-0005137" /db_xref="UniProtKB/Swiss-Prot:P39831" /db_xref="EcoGene:EG12345" /db_xref="GeneID:946085" /translation="MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL GDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETM IDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLN LRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWW VSTLPAHVNINTLEMMPVTQSYAGLNVHRQ" gene 1628352..1629038 /gene="rspR" /locus_tag="b1540" /gene_synonym="ECK1533; JW1533; ydfH" /db_xref="EcoGene:EG13820" /db_xref="GeneID:946087" CDS 1628352..1629038 /gene="rspR" /locus_tag="b1540" /gene_synonym="ECK1533; JW1533; ydfH" /function="regulator; Degradation of small molecules" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="transcriptional repressor for rspAB" /protein_id="NP_416058.1" /db_xref="GI:16129499" /db_xref="ASAP:ABE-0005144" /db_xref="UniProtKB/Swiss-Prot:P0ACM2" /db_xref="EcoGene:EG13820" /db_xref="GeneID:946087" /translation="MTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVR FNVSRQPVREAFIKLAENGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARRAA SMITESQCYQLEQNLHQQRIAIERKQLDDFFELDDNFHQLLTQIADCQLAWDTIENLK ATVDRVRYMSFDHVSPPEMLLRQHLDIFSALQKRDGDAVERAMTQHLQEISESVRQIR QENSDWFSEE" gene 1629215..1629418 /gene="ydfZ" /locus_tag="b1541" /gene_synonym="ECK1534; JW1534" /db_xref="EcoGene:EG13838" /db_xref="GeneID:948796" CDS 1629215..1629418 /gene="ydfZ" /locus_tag="b1541" /gene_synonym="ECK1534; JW1534" /codon_start=1 /transl_table=11 /product="selenoprotein, function unknown" /protein_id="NP_416059.1" /db_xref="GI:16129500" /db_xref="ASAP:ABE-0005147" /db_xref="UniProtKB/Swiss-Prot:P64463" /db_xref="EcoGene:EG13838" /db_xref="GeneID:948796" /translation="MTTYDRNRNAITTGSRVMVSGTGHTGKILSIDTEGLTAEQIRRG KTVVVEGCEEKLAPLDLIRLGMN" gene complement(1629453..1630913) /gene="ydfI" /locus_tag="b1542" /gene_synonym="ECK1535; JW1535" /db_xref="EcoGene:EG13821" /db_xref="GeneID:945861" CDS complement(1629453..1630913) /gene="ydfI" /locus_tag="b1542" /gene_synonym="ECK1535; JW1535" /function="putative enzyme; Not classified" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="putative NAD-dependent D-mannonate oxidoreductase" /protein_id="NP_416060.1" /db_xref="GI:16129501" /db_xref="ASAP:ABE-0005149" /db_xref="UniProtKB/Swiss-Prot:P77260" /db_xref="EcoGene:EG13821" /db_xref="GeneID:945861" /translation="MGNNLLSAKATLPVYDLNNLAPRIVHLGFGAFHRAHQGVYADIL ATEHFSDWGYYEVNLIGGEQQIADLQQQDNLYTVAEMSADVWTARVVGVVKKALHVQI DGLETVLAAMCEPQIAIVSLTITEKGYFHSPATGQLMLDHPMVAADVQNPHQPKTATG VIVEALARRKAAGLPAFTVMSCDNMPENGHVMRDVVTSYAQAVDVKLAQWIEDNVTFP STMVDRIVPAVTEDTLAKIEQLTGVRDPAGVACEPFRQWVIEDNFVAGRPEWEKAGAE LVSDVLPYEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMEDEHYRYAAYGLMLQEQAP TLKVQGVDLQDYANRLIARYSNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKF DLLALGVAGWMRYVGGVDEQGNPIEISDPLLPVIQKAVQSSAEGKARVQSLLAIKAIF GDDLPDNSLFTARVTETYLSLLAHGAKATVAKYSVK" gene complement(join(1631002..1632285,1652755..1652838)) /gene="ydfJ" /locus_tag="b4600" /gene_synonym="ECK1536; JW1536; ynfP" /pseudo /db_xref="EcoGene:EG13822" /db_xref="GeneID:944802" CDS complement(join(1631002..1632285,1652755..1652838)) /gene="ydfJ" /locus_tag="b4600" /gene_synonym="ECK1536; JW1536; ynfP" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="pseudogene, MFS transporter family; interrupted by Qin prophage;Phage or Prophage Related; putative transport protein" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0005152" /db_xref="ASAP:ABE-0285055" /db_xref="UniProtKB/Swiss-Prot:P77228" /db_xref="EcoGene:EG13822" /db_xref="GeneID:944802" misc_feature complement(1632286..1652743) /note="cryptic prophage Qin/Kim" gene 1633072..1633305 /gene="ydfK" /locus_tag="b1544" /gene_synonym="ECK1537; JW1537" /db_xref="EcoGene:EG13823" /db_xref="GeneID:947451" CDS 1633072..1633305 /gene="ydfK" /locus_tag="b1544" /gene_synonym="ECK1537; JW1537" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="cold shock protein, function unknown, Qin prophage" /protein_id="NP_416062.2" /db_xref="GI:345452719" /db_xref="ASAP:ABE-0005161" /db_xref="UniProtKB/Swiss-Prot:P76154" /db_xref="EcoGene:EG13823" /db_xref="GeneID:947451" /translation="MKSKDTLKWFPAQLPEVRIILGDAVVEVAKQGRPINTRTLLDYI EGNIKKKSWLDNKELLQTAISVLKDNQNLNGKM" gene 1633622..1634212 /gene="pinQ" /locus_tag="b1545" /gene_synonym="ECK1538; JW1538; ydfL" /db_xref="EcoGene:EG13824" /db_xref="GeneID:946088" CDS 1633622..1634212 /gene="pinQ" /locus_tag="b1545" /gene_synonym="ECK1538; JW1538; ydfL" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Qin prophage; putative site-specific recombinase" /protein_id="NP_416063.1" /db_xref="GI:16129504" /db_xref="ASAP:ABE-0005164" /db_xref="UniProtKB/Swiss-Prot:P77170" /db_xref="EcoGene:EG13824" /db_xref="GeneID:946088" /translation="MSQIFAYCRISTLDQTTENQRREIESAGFKIKPQQIIEEHISGS AATSERPGFNRLLARLKCGDQLIVTKLDRLGCNAMDIRKTVEQLTETGIRVHCLALGG IDLTSPTGKMMMQVISAVAEFERDLLLERTHSGIVRARGAGKRFGRPPVLNEEQKQAV FERIKSGVSISAIAREFKTSRQTILRAKAKLQTPDI" gene complement(1634310..1634885) /gene="tfaQ" /locus_tag="b1546" /gene_synonym="ECK1539; JW1539; ydfM" /db_xref="EcoGene:EG13825" /db_xref="GeneID:946060" CDS complement(1634310..1634885) /gene="tfaQ" /locus_tag="b1546" /gene_synonym="ECK1539; JW1539; ydfM" /function="Phage or Prophage Related" /note="tail fiber assembly protein homolog from lambdoid prophage Qin" /codon_start=1 /transl_table=11 /product="Qin prophage; putative tail fibre assembly protein" /protein_id="NP_416064.1" /db_xref="GI:16129505" /db_xref="ASAP:ABE-0005166" /db_xref="UniProtKB/Swiss-Prot:P76155" /db_xref="EcoGene:EG13825" /db_xref="GeneID:946060" /translation="MAFRMSEQPRTIKIYNLLAGTNEFIGEGDAYIPPHTGLPANSTD IAPPDIPAGFVAVFNSDESSWHLVEDHRGKTVYDVASGDALFISELGPLPENVTWLSP EGEFQKWNGTAWVKDTEAEKLFRIREAEETKNNLMQVASEHIAPLQDAADLEIATEEE ISLLEAWKKYRVLLNRVDTSTAQDIEWPALP" gene complement(1634885..1635847) /gene="stfQ" /locus_tag="b1547" /gene_synonym="ECK1540; JW1540; ydfN" /db_xref="EcoGene:EG13826" /db_xref="GeneID:946098" CDS complement(1634885..1635847) /gene="stfQ" /locus_tag="b1547" /gene_synonym="ECK1540; JW1540; ydfN" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Qin prophage; putative side tail fibre assembly protein" /protein_id="NP_416065.1" /db_xref="GI:16129506" /db_xref="ASAP:ABE-0005168" /db_xref="UniProtKB/Swiss-Prot:P77515" /db_xref="EcoGene:EG13826" /db_xref="GeneID:946098" /translation="MNITALTDNTQGAAGLELYEVYNNGYPTAYGNIIHLKGMTAVGE GELLIGWSGTSGAHAPAFIRSRRDTTDANWSPWAQLYTSAHPPAEFYPVGAPIPWPSD TVPSGYALMQGQTFDKSAYPKLAVAYPSGVIPDMRGWTIKGKPASGRAVLSQEQDGIK SHTHSASASSTDLGTETTSSFDYGTKSTNNTGAHTHSISGTANSAGAHQHKSSGAFGG TNTSIFPNGYTAISNLSAGIMSTTSGSGQTRNAGKTSSDGAHTHSLSGTAASAGAHAH TVGIGAHTHSVAIGSHGHTITVNAAGNAENTVKNIAFNYIVRLA" gene complement(1635840..1636367) /gene="nohQ" /locus_tag="b1548" /gene_synonym="ECK1541; JW1541; nohA" /pseudo /db_xref="EcoGene:EG11634" /db_xref="GeneID:946021" CDS complement(1635840..1636367) /gene="nohQ" /locus_tag="b1548" /gene_synonym="ECK1541; JW1541; nohA" /note="pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0005172" /db_xref="UniProtKB/Swiss-Prot:P31061" /db_xref="EcoGene:EG11634" /db_xref="GeneID:946021" gene 1636756..1636989 /gene="ynfO" /locus_tag="b4533" /gene_synonym="ECK1542; JW5251" /db_xref="EcoGene:EG14422" /db_xref="GeneID:1450267" CDS 1636756..1636989 /gene="ynfO" /locus_tag="b4533" /gene_synonym="ECK1542; JW5251" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="uncharacterized protein, Qin prophage" /protein_id="YP_588454.1" /db_xref="GI:94541112" /db_xref="ASAP:ABE-0285054" /db_xref="UniProtKB/Swiss-Prot:Q2EES0" /db_xref="EcoGene:EG14422" /db_xref="GeneID:1450267" /translation="MSTKNRTRRTTTRNIRFPNQMIEQINIALEQKGSGNFSAWVIEA CRRRLCSEKRVSSEANKEKSDITELLRKQVRPD" gene 1637047..1637457 /gene="ydfO" /locus_tag="b1549" /gene_synonym="ECK1543; JW5252" /db_xref="EcoGene:EG13827" /db_xref="GeneID:945992" CDS 1637047..1637457 /gene="ydfO" /locus_tag="b1549" /gene_synonym="ECK1543; JW5252" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Qin prophage; uncharacterized protein" /protein_id="NP_416067.2" /db_xref="GI:90111292" /db_xref="ASAP:ABE-0005175" /db_xref="UniProtKB/Swiss-Prot:P76156" /db_xref="EcoGene:EG13827" /db_xref="GeneID:945992" /translation="MDQVVIFKQIFDKVRNDLNYQWFYSELKRHNVSHYIYYLATENV HIVLKNDNTVLLKGLKNIVSVKFSKDRHLIETTSNKLKSREITFQEYRRNLAKAGVFR WVTNIHEQKRYYYTFDNSLLFTESIQKTTQILPR" gene complement(1637609..1637782) /gene="gnsB" /locus_tag="b1550" /gene_synonym="ECK1544; JW5253; ydfY" /db_xref="EcoGene:EG13837" /db_xref="GeneID:946054" CDS complement(1637609..1637782) /gene="gnsB" /locus_tag="b1550" /gene_synonym="ECK1544; JW5253; ydfY" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Qin prophage; multicopy suppressor of secG(Cs) and fabA6(Ts)" /protein_id="NP_416068.2" /db_xref="GI:90111293" /db_xref="ASAP:ABE-0005177" /db_xref="UniProtKB/Swiss-Prot:P77695" /db_xref="EcoGene:EG13837" /db_xref="GeneID:946054" /translation="MNIENLKTKAEADISEYITKKIIELKKKTGKEVTSIQFTAREKM TGLESYDVKINLI" gene complement(1637954..1638109) /gene="ynfN" /locus_tag="b1551" /gene_synonym="ECK1545; JW5254" /db_xref="EcoGene:EG14388" /db_xref="GeneID:946097" CDS complement(1637954..1638109) /gene="ynfN" /locus_tag="b1551" /gene_synonym="ECK1545; JW5254" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Qin prophage; cold shock-induced protein" /protein_id="NP_416069.2" /db_xref="GI:90111294" /db_xref="ASAP:ABE-0005180" /db_xref="UniProtKB/Swiss-Prot:P76157" /db_xref="EcoGene:EG14388" /db_xref="GeneID:946097" /translation="MREYPNGEKTHLTVMAAGFPSLTGDHKVIYVAADRHVTSEEILE AAIRLLS" gene complement(1638455..1638667) /gene="cspI" /locus_tag="b1552" /gene_synonym="cspJ; ECK1546; JW1544" /db_xref="EcoGene:EG13877" /db_xref="GeneID:946099" CDS complement(1638455..1638667) /gene="cspI" /locus_tag="b1552" /gene_synonym="cspJ; ECK1546; JW1544" /function="Phage or Prophage Related" /note="cold shock-like protein" /codon_start=1 /transl_table=11 /product="Qin prophage; cold shock protein" /protein_id="NP_416070.1" /db_xref="GI:16129511" /db_xref="ASAP:ABE-0005183" /db_xref="UniProtKB/Swiss-Prot:P0A986" /db_xref="EcoGene:EG13877" /db_xref="GeneID:946099" /translation="MSNKMTGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNDFKT LTENQEVEFGIENGPKGPAAVHVVAL" gene complement(1639030..1639527) /gene="rzpQ" /locus_tag="b1553" /gene_synonym="ECK1547; JW1545; Rz; ydfP" /db_xref="EcoGene:EG13828" /db_xref="GeneID:946101" CDS complement(1639030..1639527) /gene="rzpQ" /locus_tag="b1553" /gene_synonym="ECK1547; JW1545; Rz; ydfP" /function="Phage or Prophage Related" /note="completely contained in another CDS" /codon_start=1 /transl_table=11 /product="Rz-like protein, Qin prophage" /protein_id="NP_416071.1" /db_xref="GI:16129512" /db_xref="ASAP:ABE-0005187" /db_xref="UniProtKB/Swiss-Prot:P76158" /db_xref="EcoGene:EG13828" /db_xref="GeneID:946101" /translation="MNQIFMVIFLVLSGFIVGNVWSDRGWQKKWAERDAAALSQEVNA QFAARIIEQGRTIARDEAVKDAQQKSAEISARAAYLSDSVNQLRAEAKKYAIRLDAAK HTADLAAAVRGKTTKTAEGMLTNMLGDIAAEAQLYAEIADERYIAGVTCQQIYESLRD KKHQM" gene complement(1639080..1639334) /gene="rzoQ" /locus_tag="b4689" /gene_synonym="ECK4503; Rz1" /db_xref="EcoGene:EG14493" /db_xref="GeneID:7751615" CDS complement(1639080..1639334) /gene="rzoQ" /locus_tag="b4689" /gene_synonym="ECK4503; Rz1" /note="completely contained in another CDS" /codon_start=1 /transl_table=11 /product="putative Rz1-like lipoprotein, Qin prophage" /protein_id="YP_002791241.1" /db_xref="GI:226524715" /db_xref="UniProtKB/Swiss-Prot:C1P601" /db_xref="EcoGene:EG14493" /db_xref="GeneID:7751615" /translation="MRNRNLLKFLPGLLICLIVLTSCVPKQKNMPYALTQRSIPQILP LPSEAKQPKPPKECSPTCSEILQQKLSFMLKLLTNATSQE" gene complement(1639524..1640057) /gene="rrrQ" /locus_tag="b1554" /gene_synonym="arrQ; ECK1548; JW1546; ydfQ" /db_xref="EcoGene:EG13829" /db_xref="GeneID:946100" CDS complement(1639524..1640057) /gene="rrrQ" /locus_tag="b1554" /gene_synonym="arrQ; ECK1548; JW1546; ydfQ" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Qin prophage; putative lysozyme" /protein_id="NP_416072.1" /db_xref="GI:16129513" /db_xref="ASAP:ABE-0005189" /db_xref="UniProtKB/Swiss-Prot:P76159" /db_xref="EcoGene:EG13829" /db_xref="GeneID:946100" /translation="MNTKIRYGLSAAVLALIGAGASAPQILDQFLDEKEGNHTMAYRD GSGIWTICRGATVVDGKTVFPNMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQK AGIASFCPYNIGPGKCFPSTFYKRLNAGDRKGACEAIRWWIKDGGRDCRIRSNNCYGQ VIRRDQESALTCWGIEQ" gene complement(1640054..1640365) /gene="ydfR" /locus_tag="b1555" /gene_synonym="ECK1549; JW1547" /db_xref="EcoGene:EG13830" /db_xref="GeneID:946095" CDS complement(1640054..1640365) /gene="ydfR" /locus_tag="b1555" /gene_synonym="ECK1549; JW1547" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Qin prophage; uncharacterized protein" /protein_id="NP_416073.1" /db_xref="GI:16129514" /db_xref="ASAP:ABE-0005192" /db_xref="UniProtKB/Swiss-Prot:P76160" /db_xref="EcoGene:EG13830" /db_xref="GeneID:946095" /translation="MTQDYELVVKGVRNFENKVTVTVALQDKERFDGEIFDLDVAMDR VEGAALEFYEAAARRSVRQVFLEVAEKLSEKVESYLQHQYSFKIENPANKHERPHHKY L" gene complement(1640370..1640585) /gene="essQ" /locus_tag="b1556" /gene_synonym="ECK1550; JW5255; ydfS" /db_xref="EcoGene:EG13831" /db_xref="GeneID:946093" CDS complement(1640370..1640585) /gene="essQ" /locus_tag="b1556" /gene_synonym="ECK1550; JW5255; ydfS" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Qin prophage; putative S lysis protein" /protein_id="NP_416074.4" /db_xref="GI:90111295" /db_xref="ASAP:ABE-0005197" /db_xref="UniProtKB/Swiss-Prot:P77237" /db_xref="EcoGene:EG13831" /db_xref="GeneID:946093" /translation="MKSMDKLTTGVAYGTSAGNAGFWALQLLDKVTPSQWAAIGVLGS LVFGLLTYLTNLYFKIKEDRRKAARGE" gene complement(1641339..1641554) /gene="cspB" /locus_tag="b1557" /gene_synonym="ECK1551; JW1549" /db_xref="EcoGene:EG12203" /db_xref="GeneID:946091" CDS complement(1641339..1641554) /gene="cspB" /locus_tag="b1557" /gene_synonym="ECK1551; JW1549" /function="phenotype; Adaptations, atypical conditions; Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Qin prophage; cold shock protein" /protein_id="NP_416075.1" /db_xref="GI:16129516" /db_xref="ASAP:ABE-0005199" /db_xref="UniProtKB/Swiss-Prot:P36995" /db_xref="EcoGene:EG12203" /db_xref="GeneID:946091" /translation="MSNKMTGLVKWFNADKGFGFISPVDGSKDVFVHFSAIQNDNYRT LFEGQKVTFSIESGAKGPAAANVIITD" gene 1641855..1642067 /gene="cspF" /locus_tag="b1558" /gene_synonym="ECK1552; JW1550" /db_xref="EcoGene:EG12205" /db_xref="GeneID:946090" CDS 1641855..1642067 /gene="cspF" /locus_tag="b1558" /gene_synonym="ECK1552; JW1550" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Qin prophage; cold shock protein" /protein_id="NP_416076.1" /db_xref="GI:16129517" /db_xref="ASAP:ABE-0005205" /db_xref="UniProtKB/Swiss-Prot:P0A976" /db_xref="EcoGene:EG12205" /db_xref="GeneID:946090" /translation="MSRKMTGIVKTFDGKSGKGLITPSDGRIDVQLHVSALNLRDAEE ITTGLRVEFCRINGLRGPSAANVYLS" gene complement(1642489..1643241) /gene="quuQ" /locus_tag="b1559" /gene_synonym="ECK1553; JW1551; ydfT" /db_xref="EcoGene:EG13832" /db_xref="GeneID:946103" CDS complement(1642489..1643241) /gene="quuQ" /locus_tag="b1559" /gene_synonym="ECK1553; JW1551; ydfT" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Qin prophage; putative antitermination protein Q" /protein_id="NP_416077.4" /db_xref="GI:90111296" /db_xref="ASAP:ABE-0005207" /db_xref="UniProtKB/Swiss-Prot:P76161" /db_xref="EcoGene:EG13832" /db_xref="GeneID:946103" /translation="MNLEALPKYYSPKSPKLSDDAPATGTGCLTITDVMAAQGMVQSK APLGLALFLAKVGVQDPQFAIEGLLNYAMALDNPTLNKLSEEIRLQIIPYLVSFAFAD YSRSAASKARCEHCSGTGFYNVLREVVKHYRRGESVIKEEWVKELCQHCHGKGEASTA CRGCKGKGIVLDEKRTRFHGVPVYKICGRCNGNRFSRLPTTLARRHVQKLVPDLTDYQ WYKGYADVIGKLVTKCWQEEAYAEAQLRKVTR" gene complement(1643255..1644304) /gene="ydfU" /locus_tag="b1560" /gene_synonym="ECK1554; JW5909" /db_xref="EcoGene:EG13833" /db_xref="GeneID:946108" CDS complement(1643255..1644304) /gene="ydfU" /locus_tag="b1560" /gene_synonym="ECK1554; JW5909" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Qin prophage; uncharacterized protein" /protein_id="NP_416078.4" /db_xref="GI:226524716" /db_xref="ASAP:ABE-0005209" /db_xref="UniProtKB/Swiss-Prot:P76162" /db_xref="EcoGene:EG13833" /db_xref="GeneID:946108" /translation="MRVLLRPVLVPELGLVVLKPGRESIQIFHNPRVLVEPEPKSMRN LPSGVVPAVRQPLAEDKTLLPFFSNERVIRAAGGVGALSDWLLRHVTSCQWPNGDYHH TETVIHRYGTGAMVLCWHCDNQLRDQTSESLELLAQQNLTAWVIDVIRHAISGTQERE LSLAELSWWAVCNQVVDALPEAVSRRSLGLPAEKICSVYRESDIVPGELTATSILKQR TKNLAPLPYAHQQQKSPQEKTVVSITVDPESPESFMKLPKRRRWVKEKYTRWVKTQPC ACCGMPADDPHHLIGHGQGGMGTKAHDLFVLPLCRKHHNELHTDTVAFEDKYGSQLEL IFRFIDRALAIGVLA" gene complement(1644651..1644902) /gene="rem" /locus_tag="b1561" /gene_synonym="ECK1555; JW1553" /db_xref="EcoGene:EG11129" /db_xref="GeneID:946109" CDS complement(1644651..1644902) /gene="rem" /locus_tag="b1561" /gene_synonym="ECK1555; JW1553" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Qin prophage; uncharacterized protein" /protein_id="NP_416079.1" /db_xref="GI:16129520" /db_xref="ASAP:ABE-0005215" /db_xref="UniProtKB/Swiss-Prot:P07010" /db_xref="EcoGene:EG11129" /db_xref="GeneID:946109" /translation="MMNIEELRKIFCEDGLYAVCVENGNLVSHYRIMCLRKNGAALIN FVDARVTDGFILREGEFVTSLQALKEIGIKAGFSAFSGE" gene complement(1645119..1645274) /gene="hokD" /locus_tag="b1562" /gene_synonym="ECK1556; JW1554; relF" /db_xref="EcoGene:EG11130" /db_xref="GeneID:948616" CDS complement(1645119..1645274) /gene="hokD" /locus_tag="b1562" /gene_synonym="ECK1556; JW1554; relF" /function="factor; Cell killing" /note="polypeptide destructive to membrane potential; hokD (relF) regulatory elements are deleted, and the gene is fused to the relBE transcript; evolutionary relic?" /codon_start=1 /transl_table=11 /product="Qin prophage; small toxic polypeptide" /protein_id="NP_416080.1" /db_xref="GI:16129521" /db_xref="ASAP:ABE-0005219" /db_xref="UniProtKB/Swiss-Prot:P0ACG6" /db_xref="EcoGene:EG11130" /db_xref="GeneID:948616" /translation="MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVF TAYEPEE" gene complement(1645346..1645633) /gene="relE" /locus_tag="b1563" /gene_synonym="ECK1557; JW1555" /db_xref="EcoGene:EG11131" /db_xref="GeneID:947549" CDS complement(1645346..1645633) /gene="relE" /locus_tag="b1563" /gene_synonym="ECK1557; JW1555" /function="Phage or Prophage Related" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="Qin prophage; toxin of the RelE-RelB toxin-antitoxin system" /protein_id="NP_416081.1" /db_xref="GI:16129522" /db_xref="ASAP:ABE-0005221" /db_xref="UniProtKB/Swiss-Prot:P0C077" /db_xref="EcoGene:EG11131" /db_xref="GeneID:947549" /translation="MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKL RGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGKRERSEVYSEAVKRIL" gene complement(1645633..1645872) /gene="relB" /locus_tag="b1564" /gene_synonym="ECK1558; JW1556; RC" /db_xref="EcoGene:EG10836" /db_xref="GeneID:948308" CDS complement(1645633..1645872) /gene="relB" /locus_tag="b1564" /gene_synonym="ECK1558; JW1556; RC" /function="regulator; Global regulatory functions; Phage or Prophage Related" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="negative regulator of translation" /codon_start=1 /transl_table=11 /product="antitoxin of the RelE-RelB toxin-antitoxin syste; transcriptional repressor" /protein_id="NP_416082.1" /db_xref="GI:16129523" /db_xref="ASAP:ABE-0005224" /db_xref="UniProtKB/Swiss-Prot:P0C079" /db_xref="EcoGene:EG10836" /db_xref="GeneID:948308" /translation="MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERL PFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL" gene 1645897..1646202 /gene="ydfV" /locus_tag="b1565" /gene_synonym="ECK1559; JW1557" /db_xref="EcoGene:EG13834" /db_xref="GeneID:948801" CDS 1645897..1646202 /gene="ydfV" /locus_tag="b1565" /gene_synonym="ECK1559; JW1557" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Qin prophage; uncharacterized protein" /protein_id="NP_416083.1" /db_xref="GI:16129524" /db_xref="ASAP:ABE-0005231" /db_xref="UniProtKB/Swiss-Prot:P76163" /db_xref="EcoGene:EG13834" /db_xref="GeneID:948801" /translation="MSLQVSHYNMLRASHEGSQKVVVRTVITVRFVPGAAIAKSILYC AGQLVFKESGHHLTGTDTIYFVTVRLHMHNSTYSSIFCFSMSVLLSRRRVSGDLTCR" gene 1646405..1646737 /gene="flxA" /locus_tag="b1566" /gene_synonym="ECK1560; JW1558" /db_xref="EcoGene:EG13429" /db_xref="GeneID:947392" CDS 1646405..1646737 /gene="flxA" /locus_tag="b1566" /gene_synonym="ECK1560; JW1558" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Qin prophage; uncharacterized protein" /protein_id="NP_416084.1" /db_xref="GI:16129525" /db_xref="ASAP:ABE-0005234" /db_xref="UniProtKB/Swiss-Prot:P77609" /db_xref="EcoGene:EG13429" /db_xref="GeneID:947392" /translation="MSVTIQGNTSTVISNNSAPEGTSEIAKITRQIQVLTEKLGKISS EEGMTTQQKKEMAALVQKQIESLWAQLEQLLRQQAEKKNEDATVQPDKKEEKKDDTNT AGTIDIYV" gene complement(1647174..1647356) /gene="intK" /locus_tag="b1567" /gene_synonym="ECK1561; JW1559; ydfW" /pseudo /db_xref="EcoGene:EG13835" /db_xref="GeneID:946111" CDS complement(1647174..1647356) /gene="intK" /locus_tag="b1567" /gene_synonym="ECK1561; JW1559; ydfW" /note="pseudogene, integrase fragment, Qin prophage;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0005236" /db_xref="UniProtKB/Swiss-Prot:P76164" /db_xref="EcoGene:EG13835" /db_xref="GeneID:946111" gene complement(1647358..1647636) /gene="ydfX" /locus_tag="b1568" /gene_synonym="ECK1562; JW1560" /pseudo /db_xref="EcoGene:EG13836" /db_xref="GeneID:946112" CDS complement(1647358..1647636) /gene="ydfX" /locus_tag="b1568" /gene_synonym="ECK1562; JW1560" /note="pseudogene, Qin prophage;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0005239" /db_xref="UniProtKB/Swiss-Prot:P76165" /db_xref="EcoGene:EG13836" /db_xref="GeneID:946112" gene complement(1647620..1647850) /gene="dicC" /locus_tag="b1569" /gene_synonym="ECK1563; ftsT; JW1561" /db_xref="EcoGene:EG10228" /db_xref="GeneID:946120" CDS complement(1647620..1647850) /gene="dicC" /locus_tag="b1569" /gene_synonym="ECK1563; ftsT; JW1561" /function="regulator; Cell division; Phage or Prophage Related" /note="regulator of dicB" /codon_start=1 /transl_table=11 /product="Qin prophage; DNA-binding transcriptional regulator for DicB" /protein_id="NP_416087.1" /db_xref="GI:16129528" /db_xref="ASAP:ABE-0005244" /db_xref="UniProtKB/Swiss-Prot:P06965" /db_xref="EcoGene:EG10228" /db_xref="GeneID:946120" /translation="MLKTDALLYFGSKTKLAQAAGIRLASLYSWKGDLVPEGRAMRLQ EASGGELQYDPKVYDEYRKTKRAGRLNNENHS" gene 1647934..1648341 /gene="dicA" /locus_tag="b1570" /gene_synonym="ECK1564; ftsT; JW1562" /db_xref="EcoGene:EG10226" /db_xref="GeneID:946241" CDS 1647934..1648341 /gene="dicA" /locus_tag="b1570" /gene_synonym="ECK1564; ftsT; JW1562" /function="regulator; Cell division; Phage or Prophage Related" /note="regulator of dicB" /codon_start=1 /transl_table=11 /product="Qin prophage; putative regulator for DicB" /protein_id="NP_416088.1" /db_xref="GI:16129529" /db_xref="ASAP:ABE-0005248" /db_xref="UniProtKB/Swiss-Prot:P06966" /db_xref="EcoGene:EG10226" /db_xref="GeneID:946241" /translation="METKNLTIGERIRYRRKNLKHTQRSLAKALKISHVSVSQWERGD SEPTGKNLFALSKVLQCSPTWILFGDEDKQPTPPVEKPVALSPKELELLELFNALPES EQDTQLAEMRARVKNFNKLFEELLKARQRTNKR" gene 1648508..1648663 /gene="ydfA" /locus_tag="b1571" /gene_synonym="ECK1565; JW1563" /db_xref="EcoGene:EG11300" /db_xref="GeneID:946082" CDS 1648508..1648663 /gene="ydfA" /locus_tag="b1571" /gene_synonym="ECK1565; JW1563" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Qin prophage; uncharacterized protein" /protein_id="NP_416089.1" /db_xref="GI:16129530" /db_xref="ASAP:ABE-0005251" /db_xref="UniProtKB/Swiss-Prot:P0ACW8" /db_xref="EcoGene:EG11300" /db_xref="GeneID:946082" /translation="MDTIDLGNNESLVYGVFPNQDGTFTAMTYTKSKTFKTENGARRW LERNSGE" gene 1648665..1648793 /gene="ydfB" /locus_tag="b1572" /gene_synonym="ECK1566; JW1564" /db_xref="EcoGene:EG11301" /db_xref="GeneID:946176" CDS 1648665..1648793 /gene="ydfB" /locus_tag="b1572" /gene_synonym="ECK1566; JW1564" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Qin prophage; uncharacterized protein" /protein_id="NP_416090.2" /db_xref="GI:90111298" /db_xref="ASAP:ABE-0005253" /db_xref="UniProtKB/Swiss-Prot:P29009" /db_xref="EcoGene:EG11301" /db_xref="GeneID:946176" /translation="MDFDTIMEKAYEEYFEGLAEGEEALSFSEFKQALSSSAKSNG" gene 1648823..1649041 /gene="ydfC" /locus_tag="b1573" /gene_synonym="ECK1567; JW1565" /db_xref="EcoGene:EG11302" /db_xref="GeneID:946107" CDS 1648823..1649041 /gene="ydfC" /locus_tag="b1573" /gene_synonym="ECK1567; JW1565" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="uncharacterized protein, Qin prophage" /protein_id="NP_416091.1" /db_xref="GI:16129532" /db_xref="ASAP:ABE-0005255" /db_xref="UniProtKB/Swiss-Prot:P21418" /db_xref="EcoGene:EG11302" /db_xref="GeneID:946107" /translation="MQKREPVIIAPDYTDDELYEWMRQKINAAQDLKWANEARAKQAE NLSALEQDITNLEKAAALSIARMITYPR" gene 1649382..1649434 /gene="dicF" /locus_tag="b1574" /gene_synonym="ECK1568; JWR0030" /db_xref="EcoGene:EG31115" /db_xref="GeneID:946140" ncRNA 1649382..1649434 /ncRNA_class="antisense_RNA" /gene="dicF" /locus_tag="b1574" /gene_synonym="ECK1568; JWR0030" /product="sRNA antisense regulator, inhibits ftsZ, Hfq-dependent; Qin prophage" /note="DicF antisense RNA, inhibits ftsZ translation" /db_xref="ASAP:ABE-0005257" /db_xref="EcoGene:EG31115" /db_xref="GeneID:946140" gene 1649609..1649797 /gene="dicB" /locus_tag="b1575" /gene_synonym="ECK1569; ftsT; JW1566" /db_xref="EcoGene:EG10227" /db_xref="GeneID:946110" CDS 1649609..1649797 /gene="dicB" /locus_tag="b1575" /gene_synonym="ECK1569; ftsT; JW1566" /function="regulator; Cell division; Phage or Prophage Related" /note="inhibition of cell division" /codon_start=1 /transl_table=11 /product="Qin prophage; cell division inhibition protein" /protein_id="NP_416092.1" /db_xref="GI:16129533" /db_xref="ASAP:ABE-0005260" /db_xref="UniProtKB/Swiss-Prot:P09557" /db_xref="EcoGene:EG10227" /db_xref="GeneID:946110" /translation="MKTLLPNVNTSEGCFEIGVTISNPVFTEDAINKRKQERELLNKI CIVSMLARLRLMPKGCAQ" gene 1649794..1649985 /gene="ydfD" /locus_tag="b1576" /gene_synonym="ECK1570; JW1567" /db_xref="EcoGene:EG11303" /db_xref="GeneID:946102" CDS 1649794..1649985 /gene="ydfD" /locus_tag="b1576" /gene_synonym="ECK1570; JW1567" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="Qin prophage; uncharacterized protein" /protein_id="NP_416093.1" /db_xref="GI:16129534" /db_xref="ASAP:ABE-0005262" /db_xref="UniProtKB/Swiss-Prot:P29010" /db_xref="EcoGene:EG11303" /db_xref="GeneID:946102" /translation="MNSAFVLVLTVFLVSGEPVDIAVSVHRTMQECMTAATEQKIPGN CYPVDKVIHQDNIEIPAGL" gene 1650078..1650842 /gene="ydfE" /locus_tag="b1577" /gene_synonym="ECK1571; JW1568" /pseudo /db_xref="EcoGene:EG11304" /db_xref="GeneID:946113" CDS 1650078..1650842 /gene="ydfE" /locus_tag="b1577" /gene_synonym="ECK1571; JW1568" /note="Qin prophage; pseudogene;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0005265" /db_xref="UniProtKB/Swiss-Prot:Q47138" /db_xref="EcoGene:EG11304" /db_xref="GeneID:946113" mobile_element 1650843..1651548 /mobile_element_type="insertion sequence:IS2E" gene 1650845..1651537 /gene="insD1" /locus_tag="b1578" /gene_synonym="ECK0358" /pseudo /db_xref="EcoGene:EG40004" /db_xref="GeneID:946118" CDS 1650845..1651537 /gene="insD1" /locus_tag="b1578" /gene_synonym="ECK0358" /note="IS2 transposase TnpB;IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0005268" /db_xref="UniProtKB/Swiss-Prot:P0CF60" /db_xref="EcoGene:EG40004" /db_xref="GeneID:946118" gene 1651551..1652708 /gene="intQ" /locus_tag="b1579" /gene_synonym="ECK1573; JW1571" /pseudo /db_xref="EcoGene:EG13188" /db_xref="GeneID:946130" CDS 1651551..1652708 /gene="intQ" /locus_tag="b1579" /gene_synonym="ECK1573; JW1571" /note="pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0005270" /db_xref="UniProtKB/Swiss-Prot:P76168" /db_xref="EcoGene:EG13188" /db_xref="GeneID:946130" gene complement(1652896..1653915) /gene="rspB" /locus_tag="b1580" /gene_synonym="ECK1575; JW1572" /db_xref="EcoGene:EG12452" /db_xref="GeneID:946127" CDS complement(1652896..1653915) /gene="rspB" /locus_tag="b1580" /gene_synonym="ECK1575; JW1572" /function="enzyme; Global regulatory functions" /GO_process="GO:0042594 - response to starvation" /note="starvation sensing protein" /codon_start=1 /transl_table=11 /product="putative Zn-dependent NAD(P)-binding oxidoreductase" /protein_id="NP_416097.1" /db_xref="GI:16129538" /db_xref="ASAP:ABE-0005272" /db_xref="UniProtKB/Swiss-Prot:P38105" /db_xref="EcoGene:EG12452" /db_xref="GeneID:946127" /translation="MKSILIEKPNQLAIVEREIPTPSAGEVRVKVKLAGICGSDSHIY RGHNPFAKYPRVIGHEFFGVIDAVGEGVESARVGERVAVDPVVSCGHCYPCSIGKPNV CTTLAVLGVHADGGFSEYAVVPAKNAWKIPEAVADQYAVMIEPFTIAANVTGHGQPTE NDTVLVYGAGPIGLTIVQVLKGVYNVKNVIVADRIDERLEKAKESGADWAINNSQTPL GEIFTEKGIKPTLIIDAACHPSILKEAVTLASPAARIVLMGFSSEPSEVIQQGITGKE LSIFSSRLNANKFPIVIDWLSKGLIKPEKLITHTFDFQHVADAISLFEQDQKHCCKVL LTFSE" gene complement(1653927..1655141) /gene="rspA" /locus_tag="b1581" /gene_synonym="ECK1576; JW1573" /db_xref="EcoGene:EG12451" /db_xref="GeneID:946126" CDS complement(1653927..1655141) /gene="rspA" /locus_tag="b1581" /gene_synonym="ECK1576; JW1573" /function="phenotype; Global regulatory functions" /GO_process="GO:0042594 - response to starvation" /note="starvation sensing protein" /codon_start=1 /transl_table=11 /product="bifunctional D-altronate/D-mannonate dehydratase" /protein_id="NP_416098.1" /db_xref="GI:16129539" /db_xref="ASAP:ABE-0005275" /db_xref="UniProtKB/Swiss-Prot:P38104" /db_xref="EcoGene:EG12451" /db_xref="GeneID:946126" /translation="MKIVKAEVFVTCPGRNFVTLKITTEDGITGLGDATLNGRELSVA SYLQDHLCPQLIGRDAHRIEDIWQFFYKGAYWRRGPVTMSAISAVDMALWDIKAKAAN MPLYQLLGGASREGVMVYCHTTGHSIDEALDDYARHQELGFKAIRVQCGIPGMKTTYG MSKGKGLAYEPATKGQWPEEQLWSTEKYLDFMPKLFDAVRNKFGFNEHLLHDMHHRLT PIEAARFGKSIEDYRMFWMEDPTPAENQECFRLIRQHTVTPIAVGEVFNSIWDCKQLI EEQLIDYIRTTLTHAGGITGMRRIADFASLYQVRTGSHGPSDLSPVCMAAALHFDLWV PNFGVQEYMGYSEQMLEVFPHNWTFDNGYMHPGDKPGLGIEFDEKLAAKYPYEPAYLP VARLEDGTLWNW" gene complement(1655347..1655673) /gene="ynfA" /locus_tag="b1582" /gene_synonym="ECK1577; JW1574" /db_xref="EcoGene:EG13839" /db_xref="GeneID:946125" CDS complement(1655347..1655673) /gene="ynfA" /locus_tag="b1582" /gene_synonym="ECK1577; JW1574" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="UPF0060 family inner membrane protein" /protein_id="NP_416099.1" /db_xref="GI:16129540" /db_xref="ASAP:ABE-0005279" /db_xref="UniProtKB/Swiss-Prot:P76169" /db_xref="EcoGene:EG13839" /db_xref="GeneID:946125" /translation="MIKTTLLFFATALCEIIGCFLPWLWLKRNASIWLLLPAGISLAL FVWLLTLHPAASGRVYAAYGGVYVCTALMWLRVVDGVKLTLYDWTGALIALCGMLIIV AGWGRT" gene 1655808..1656149 /gene="ynfB" /locus_tag="b1583" /gene_synonym="ECK1578; JW1575" /db_xref="EcoGene:EG13840" /db_xref="GeneID:946119" CDS 1655808..1656149 /gene="ynfB" /locus_tag="b1583" /gene_synonym="ECK1578; JW1575" /codon_start=1 /transl_table=11 /product="UPF0482 family putative periplasmic protein" /protein_id="NP_416100.1" /db_xref="GI:16129541" /db_xref="ASAP:ABE-0005284" /db_xref="UniProtKB/Swiss-Prot:P76170" /db_xref="EcoGene:EG13840" /db_xref="GeneID:946119" /translation="MKITLSKRIGLLAILLPCALALSTTVHAETNKLVIESGDSAQSR QHAAMEKEQWNDTRNLRQKVNKRTEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRC LDRRTGRVITP" gene 1656184..1656744 /gene="speG" /locus_tag="b1584" /gene_synonym="ECK1579; JW1576" /db_xref="EcoGene:EG12447" /db_xref="GeneID:946117" CDS 1656184..1656744 /gene="speG" /locus_tag="b1584" /gene_synonym="ECK1579; JW1576" /EC_number="2.3.1.57" /function="enzyme; Central intermediary metabolism: Polyamine biosynthesis" /GO_process="GO:0006596 - polyamine biosynthetic process" /codon_start=1 /transl_table=11 /product="spermidine N(1)-acetyltransferase" /protein_id="NP_416101.1" /db_xref="GI:16129542" /db_xref="ASAP:ABE-0005286" /db_xref="UniProtKB/Swiss-Prot:P0A951" /db_xref="EcoGene:EG12447" /db_xref="GeneID:946117" /translation="MPSAHSVKLRPLEREDLRYVHQLDNNASVMRYWFEEPYEAFVEL SDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHVHRRAEFQIIISPEYQGKGLATR AAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFSVEGELMHEFFINGQYRNAI RMCIFQHQYLAEHKTPGQTLLKPTAQ" gene complement(1656747..1657457) /gene="ynfC" /locus_tag="b1585" /gene_synonym="ECK1580; JW5258" /db_xref="EcoGene:EG13841" /db_xref="GeneID:946131" CDS complement(1656747..1657457) /gene="ynfC" /locus_tag="b1585" /gene_synonym="ECK1580; JW5258" /codon_start=1 /transl_table=11 /product="UPF0257 family lipoprotein" /protein_id="NP_416102.2" /db_xref="GI:90111299" /db_xref="ASAP:ABE-0005288" /db_xref="UniProtKB/Swiss-Prot:P67553" /db_xref="EcoGene:EG13841" /db_xref="GeneID:946131" /translation="MKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSNEFDFDPLRG PVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELLDLENNTVVALVLDANYYRDAET LEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKS NDKTLSVSATPSTDPIKKLDYTAVTLLNNQRVGNVKQSCEYDSHANPVDCQLIIVDEG VKPAVERVYTIKNTIDYY" gene 1657565..1657870 /gene="ynfD" /locus_tag="b1586" /gene_synonym="ECK1581; JW5259" /db_xref="EcoGene:EG13842" /db_xref="GeneID:946133" CDS 1657565..1657870 /gene="ynfD" /locus_tag="b1586" /gene_synonym="ECK1581; JW5259" /codon_start=1 /transl_table=11 /product="DUF1161 family periplasmic protein" /protein_id="NP_416103.2" /db_xref="GI:90111300" /db_xref="ASAP:ABE-0005297" /db_xref="UniProtKB/Swiss-Prot:P76172" /db_xref="EcoGene:EG13842" /db_xref="GeneID:946133" /translation="MKLSTCCAALLLALASPAVLAAPGSCERIQSDISQRIINNGVPE SSFTLSIVPNDQVDQPDSQVVGHCANDTHKILYTRTTSGNVSAPAQSSQDGAPAEPQ" repeat_region 1657888..1657908 /note="REP124 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 1658069..1660495 /gene="ynfE" /locus_tag="b1587" /gene_synonym="ECK1582; JW1579" /db_xref="EcoGene:EG13843" /db_xref="GeneID:946135" CDS 1658069..1660495 /gene="ynfE" /locus_tag="b1587" /gene_synonym="ECK1582; JW1579" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative selenate reductase, periplasmic" /protein_id="NP_416104.1" /db_xref="GI:16129545" /db_xref="ASAP:ABE-0005302" /db_xref="UniProtKB/Swiss-Prot:P77374" /db_xref="EcoGene:EG13843" /db_xref="GeneID:946135" /translation="MSKNERMVGISRRTLVKSTAIGSLALAAGGFSLPFTLRNAAAAV QQAREKVVWGACSVNCGSRCALRLHVKDNEVTWVETDNTGSDEYGNHQVRACLRGRSI RRRINHPDRLNYPMKRVGKRGEGKFERISWDEALDTIASSLKKTVEQYGNEAVYIQYS SGIVGGNMTRSSPSASAVKRLMNCYGGSLNQYGSYSTAQISCAMPYTYGSNDGNSTTD IENSKLVVMFGNNPAETRMSGGGITYLLEKAREKSNAKMIVIDPRYTDTAAGREDEWL PIRPGTDAALVAGIAWVLINENLVDQPFLDKYCVGYDEKTLPADAPKNGHYKAYILGE GDDKTAKTPQWASQITGIPEDRIIKLAREIGTAKPAYICQGWGPQRQANGELTARAIA MLPILTGNVGISGGNSGARESTYTITIERLPVLDNPVKTSISCFSWTDAIDHGPQMTA IRDGVRGKDKLDVPIKFIWNYAGNTLVNQHSDINKTHEILQDESKCEMIVVIENFMTS SAKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFLQPVTSEKFERKPIYWILSEVAKR LGPDVYQKFTEGRTQEQWLQHLYAKMLAKDPALPSYDELKKMGIYKRKDPNGHFVAYK AFRDDPEANPLKTPSGKIEIYSSRLAEIARTWELEKDEVISPLPVYASTFEGWNSPER RTFPLQLFGFHYKSRTHSTYGNIDLLKAACRQEVWINPIDAQKRGIANGDMVRVFNHR GEVRLPAKVTPRILPGVSAMGQGAWHEANMSGDKIDHGGCVNTLTTLRPSPLAKGNPQ HTNLVEIEKI" gene 1660556..1662979 /gene="ynfF" /locus_tag="b1588" /gene_synonym="ECK1583; JW5260" /db_xref="EcoGene:EG13844" /db_xref="GeneID:945268" CDS 1660556..1662979 /gene="ynfF" /locus_tag="b1588" /gene_synonym="ECK1583; JW5260" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="S- and N-oxide reductase, A subunit, periplasmic" /protein_id="NP_416105.4" /db_xref="GI:171701681" /db_xref="ASAP:ABE-0005307" /db_xref="UniProtKB/Swiss-Prot:P77783" /db_xref="EcoGene:EG13844" /db_xref="GeneID:945268" /translation="MKIHTTEALMKAEISRRSLMKTSALGSLALASSAFTLPFSQMVR AAEAPVEEKAVWSSCTVNCGSRCLLRLHVKDDTVYWVESDTTGDDVYGNHQVRACLRG RSIRRRMNHPDRLKYPMKRVGKRGEGKFERISWDEALDTISDNLRRILKDYGNEAVHV LYGTGVDGGNITNSNVPYRLMNSCGGFLSRYGSYSTAQISAAMSYMFGANDGNSPDDI ANTKLVVMFGNNPAETRMSGGGVTYYVEQARERSNARMIVIDPRYNDTAAGREDEWLP IRPGTDGALACAIAWVLITENMVDQPFLDKYCVGYDEKTLPANAPRNAHYKAYILGEG PDGIAKTPEWAAKITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTSRAIAM LSVLTGNVGINGGNSGVREGSWDLGVEWFPMLENPVKTQISVFTWTDAIDHGTEMTAT RDGVRGKEKLDVPIKFLWCYASNTLINQHGDINHTHEVLQDDSKCEMIVGIDHFMTAS AKYCDILLPDLMPTEQEDLISHESAGNMGYVILAQPATSAKFERKPIYWMLSEVAKRL GPDVYQTFTEGRSQHEWIKYLHAKTKERNPEMPDYEEMKTTGIFKKKCPEEHYVAFRA FREDPQANPLKTPSGKIEIYSERLAKIADTWELKKDEIIHPLPAYTPGFDGWDDPLRK TYPLQLTGFHYKARTHSSYGNIDVLQQACPQEVWINPIDAQARGIRHGDTVRVFNNNG EMLIAAKVTPRILPGVTAIGQGAWLKADMFGDRVDHGGSINILTSHRPSPLAKGNPSH SNLVQIEKV" gene 1662990..1663607 /gene="ynfG" /locus_tag="b1589" /gene_synonym="ECK1584; JW1581" /db_xref="EcoGene:EG13845" /db_xref="GeneID:945638" CDS 1662990..1663607 /gene="ynfG" /locus_tag="b1589" /gene_synonym="ECK1584; JW1581" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="oxidoreductase, Fe-S subunit" /protein_id="NP_416106.1" /db_xref="GI:16129547" /db_xref="ASAP:ABE-0005309" /db_xref="UniProtKB/Swiss-Prot:P0AAJ1" /db_xref="EcoGene:EG13845" /db_xref="GeneID:945638" /translation="MTTQYGFFIDSSRCTGCKTCELACKDFKDLGPEVSFRRIYEYAG GDWQEDNGVWHQNVFAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGC RYCHMACPYGAPQYNAEKGHMTKCDGCYSRVAEGKQPICVESCPLRALEFGPIEELRQ KHGTLAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPEEV" gene 1663609..1664463 /gene="ynfH" /locus_tag="b1590" /gene_synonym="ECK1585; JW5261" /db_xref="EcoGene:EG13846" /db_xref="GeneID:945822" CDS 1663609..1664463 /gene="ynfH" /locus_tag="b1590" /gene_synonym="ECK1585; JW5261" /function="putative enzyme; Degradation of small molecules: Carbon compounds" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="oxidoreductase, membrane subunit" /protein_id="NP_416107.1" /db_xref="GI:16129548" /db_xref="ASAP:ABE-0005311" /db_xref="UniProtKB/Swiss-Prot:P76173" /db_xref="EcoGene:EG13846" /db_xref="GeneID:945822" /translation="MGNGWHEWPLVIFTVLGQCVVGALIVSGIGWFAAKNDADRQRIV RGMFFLWLLMGVGFIASVMHLGSPLRAFNSLNRIGASGLSNEIAAGSIFFAVGGLWWL VAVIGKMPQALGKLWLLFSMALGVIFVWMMTCVYQIDTVPTWHNGYTTLAFFLTVLLS GPILAAAILRAARVTFNTTPFAIISVLALIACAGVIVLQGLSLASIHSSVQQASALVP DYASLQVWRVVLLCAGLGCWLCPLIRRREPHVAGLILGLILILGGEMIGRVLFYGLHM TVGMAIAG" gene 1664506..1665120 /gene="dmsD" /locus_tag="b1591" /gene_synonym="ECK1586; JW5262; ynfI" /db_xref="EcoGene:EG13847" /db_xref="GeneID:945987" CDS 1664506..1665120 /gene="dmsD" /locus_tag="b1591" /gene_synonym="ECK1586; JW5262; ynfI" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="twin-argninine leader-binding protein for DmsA and TorA" /protein_id="NP_416108.2" /db_xref="GI:90111302" /db_xref="ASAP:ABE-0005314" /db_xref="UniProtKB/Swiss-Prot:P69853" /db_xref="EcoGene:EG13847" /db_xref="GeneID:945987" /translation="MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWET QWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDS TLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWST RFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR" repeat_region 1665136..1665166 /note="REP125 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 1665315..1666571 /gene="clcB" /locus_tag="b1592" /gene_synonym="ECK1587; JW5263; mriT; ynfJ" /db_xref="EcoGene:EG13848" /db_xref="GeneID:947179" CDS 1665315..1666571 /gene="clcB" /locus_tag="b1592" /gene_synonym="ECK1587; JW5263; mriT; ynfJ" /function="transport; Not classified" /codon_start=1 /transl_table=11 /product="H(+)/Cl(-) exchange transporter" /protein_id="NP_416109.2" /db_xref="GI:90111303" /db_xref="ASAP:ABE-0005317" /db_xref="UniProtKB/Swiss-Prot:P76175" /db_xref="EcoGene:EG13848" /db_xref="GeneID:947179" /translation="MFHRLLIATVVGILAAFAVAGFRHAMLLLEWLFLNNDSGSLVNA ATNLSPWRRLLTPALGGLAAGLLLMGWQKFTQQRPHAPTDYMEALQTDGQFDYAASLV KSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFTPRQEWKLWIACGAAAGMAAAY RAPLAGSLFIAEVLFGTMMLASLGPVIISAVVALLVSNLINHSDALLYNVQLSVTVQA RDYALIISTGVLAGLCGPLLLTLMNACHRGFVSLKLAPPWQLALGGLIVGLLSLFTPA VWGNGYSTVQSFLTAPPLLMIIAGIFLCKLCAVLASSGSGAPGGVFTPTLFIGLAIGM LYGRSLGLWFPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLI ACVIASVISRTLHRDSIYRQHTAQHS" gene complement(1666524..1667219) /gene="ynfK" /locus_tag="b1593" /gene_synonym="ECK1588; JW5264" /db_xref="EcoGene:EG13849" /db_xref="GeneID:944927" CDS complement(1666524..1667219) /gene="ynfK" /locus_tag="b1593" /gene_synonym="ECK1588; JW5264" /GO_process="GO:0009102 - biotin biosynthetic process" /codon_start=1 /transl_table=11 /product="putative dethiobiotin synthetase" /protein_id="NP_416110.4" /db_xref="GI:90111304" /db_xref="ASAP:ABE-0005319" /db_xref="UniProtKB/Swiss-Prot:P0A6E9" /db_xref="EcoGene:EG13849" /db_xref="GeneID:944927" /translation="MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGS KETPEGLRNKDALVLQSVSTIELPYEAVNPIALSEEESSVAHSCPINYTLISNGLANL TEKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIA NDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIRLA MLRSVLAVDRVTV" gene complement(1667344..1668564) /gene="mlc" /locus_tag="b1594" /gene_synonym="dgsA; ECK1589; JW1586" /db_xref="EcoGene:EG13156" /db_xref="GeneID:945510" CDS complement(1667344..1668564) /gene="mlc" /locus_tag="b1594" /gene_synonym="dgsA; ECK1589; JW1586" /function="regulator; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0000271 - polysaccharide biosynthetic process; GO:0006350 - transcription" /note="putative NAGC-like transcriptional regulator" /codon_start=1 /transl_table=11 /product="glucosamine anaerobic growth regulon transcriptional repressor; autorepressor" /protein_id="NP_416111.1" /db_xref="GI:16129552" /db_xref="ASAP:ABE-0005323" /db_xref="UniProtKB/Swiss-Prot:P50456" /db_xref="EcoGene:EG13156" /db_xref="GeneID:945510" /translation="MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAP ASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALR DLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTE NGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQV VIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILE LAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFN PQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKD AMYNGSLLIRLLQG" gene complement(1668699..1669592) /gene="ynfL" /locus_tag="b1595" /gene_synonym="ECK1590; JW1587" /db_xref="EcoGene:EG13850" /db_xref="GeneID:946136" CDS complement(1668699..1669592) /gene="ynfL" /locus_tag="b1595" /gene_synonym="ECK1590; JW1587" /function="putative regulator; Not classified" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="LysR family putative transcriptional regulator" /protein_id="NP_416112.1" /db_xref="GI:16129553" /db_xref="ASAP:ABE-0005326" /db_xref="UniProtKB/Swiss-Prot:P77559" /db_xref="EcoGene:EG13850" /db_xref="GeneID:946136" /translation="MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQ IGARLLARTNRSVLLTAAGKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFTSS APFIRAVSDTLSLFRRDYPDVHLQTREMNTREQIAPLIEGTLDMGLLRNTALPESLEH AVIVHEPLMAMIPHDHPLANNPNVTLAELAKEPFVFFDPHVGTGLYDDILGLMRRYHL TPVITQEVGEAMTIIGLVSAGLGVSILPASFKRVQLNEMRWVPIAEEDAVSEMWLVWP KHHEQSPAARNFRIHLLNALR" gene 1669699..1670952 /gene="ynfM" /locus_tag="b1596" /gene_synonym="ECK1591; JW1588; yzyC" /db_xref="EcoGene:EG12951" /db_xref="GeneID:946138" CDS 1669699..1670952 /gene="ynfM" /locus_tag="b1596" /gene_synonym="ECK1591; JW1588; yzyC" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative arabinose efflux transporter" /protein_id="NP_416113.1" /db_xref="GI:16129554" /db_xref="ASAP:ABE-0005333" /db_xref="UniProtKB/Swiss-Prot:P43531" /db_xref="EcoGene:EG12951" /db_xref="GeneID:946138" /translation="MSRTTTVDGAPASDTDKQSISQPNQFIKRGTPQFMRVTLALFSA GLATFALLYCVQPILPVLSQEFGLTPANSSISLSISTAMLAIGLLFTGPLSDAIGRKP VMVTALLLASICTLLSTMMTSWHGILIMRALIGLSLSGVAAVGMTYLSEEIHPSFVAF SMGLYISGNSIGGMSGRLISGVFTDFFNWRIALAAIGCFALASALMFWKILPESRHFR PTSLRPKTLFINFRLHWRDRGLPLLFAEGFLLMGSFVTLFNYIGYRLMLSPWHVSQAV VGLLSLAYLTGTWSSPKAGTMTTRYGRGPVMLFSTGVMLFGLLMTLFSSLWLIFAGML LFSAGFFAAHSVASSWIGPRAKRAKGQASSLYLFSYYLGSSIAGTLGGVFWHNYGWNG VGAFIALMLVIALLVGTRLHRRLHA" gene 1671376..1671684 /gene="asr" /locus_tag="b1597" /gene_synonym="ECK1592; JW5826" /db_xref="EcoGene:EG12149" /db_xref="GeneID:945103" CDS 1671376..1671684 /gene="asr" /locus_tag="b1597" /gene_synonym="ECK1592; JW5826" /function="phenotype; Not classified" /GO_process="GO:0009268 - response to pH" /note="acid shock protein" /codon_start=1 /transl_table=11 /product="acid shock-inducible periplasmic protein" /protein_id="NP_416114.2" /db_xref="GI:90111305" /db_xref="ASAP:ABE-0005337" /db_xref="UniProtKB/Swiss-Prot:P36560" /db_xref="EcoGene:EG12149" /db_xref="GeneID:945103" /translation="MKKVLALVVAAAMGLSSAAFAAETTTTPAPTATTTKAAPAKTTH HKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAKKHSHQQPAKPAAQPAA " gene 1671777..1671860 /gene="ydgU" /locus_tag="b4601" /gene_synonym="ECK4410" /db_xref="EcoGene:EG14462" /db_xref="GeneID:5061510" CDS 1671777..1671860 /gene="ydgU" /locus_tag="b4601" /gene_synonym="ECK4410" /codon_start=1 /transl_table=11 /product="stationary phase-induced protein" /protein_id="YP_001165320.1" /db_xref="GI:145698267" /db_xref="UniProtKB/Swiss-Prot:A5A617" /db_xref="EcoGene:EG14462" /db_xref="GeneID:5061510" /translation="MVGRYRFEFILIILILCALITARFYLS" gene 1671960..1672781 /gene="ydgD" /locus_tag="b1598" /gene_synonym="ECK1593; JW1590" /db_xref="EcoGene:EG13925" /db_xref="GeneID:946436" CDS 1671960..1672781 /gene="ydgD" /locus_tag="b1598" /gene_synonym="ECK1593; JW1590" /codon_start=1 /transl_table=11 /product="putative peptidase" /protein_id="NP_416115.1" /db_xref="GI:16129556" /db_xref="ASAP:ABE-0005340" /db_xref="UniProtKB/Swiss-Prot:P76176" /db_xref="EcoGene:EG13925" /db_xref="GeneID:946436" /translation="MRTTIAVVLGAISLTSAFVFADKPDVARSANDEVSTLFFGHDDR VPVNDTTQSPWDAVGQLETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVALRF VSNKGLWRYEIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITP LPLFEGDKAALTAALKAAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDT LPGDSGSPLMLHTDDGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLDQLSQK" gene complement(1672820..1673149) /gene="mdtI" /locus_tag="b1599" /gene_synonym="ECK1594; JW1591; ydgE" /db_xref="EcoGene:EG13926" /db_xref="GeneID:947333" CDS complement(1672820..1673149) /gene="mdtI" /locus_tag="b1599" /gene_synonym="ECK1594; JW1591; ydgE" /function="putative factor; Not classified" /note="possible chaperone" /codon_start=1 /transl_table=11 /product="multidrug efflux system transporter" /protein_id="NP_416116.1" /db_xref="GI:16129557" /db_xref="ASAP:ABE-0005343" /db_xref="UniProtKB/Swiss-Prot:P69210" /db_xref="EcoGene:EG13926" /db_xref="GeneID:947333" /translation="MAQFEWVHAAWLALAIVLEIVANVFLKFSDGFRRKIFGLLSLAA VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAG MIMVKLA" gene complement(1673136..1673501) /gene="mdtJ" /locus_tag="b1600" /gene_synonym="ECK1595; JW1592; ydgF" /db_xref="EcoGene:EG13927" /db_xref="GeneID:946139" CDS complement(1673136..1673501) /gene="mdtJ" /locus_tag="b1600" /gene_synonym="ECK1595; JW1592; ydgF" /function="putative factor; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="possible chaperone" /codon_start=1 /transl_table=11 /product="multidrug efflux system transporter" /protein_id="NP_416117.1" /db_xref="GI:16129558" /db_xref="ASAP:ABE-0005345" /db_xref="UniProtKB/Swiss-Prot:P69212" /db_xref="EcoGene:EG13927" /db_xref="GeneID:946139" /translation="MYIYWILLGLAIATEITGTLSMKWASVSEGNGGFILMLVMISLS YIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI KSGTRKARKPELEVNHGAV" gene 1673913..1674947 /gene="tqsA" /locus_tag="b1601" /gene_synonym="ECK1596; JW1593; ydgG" /db_xref="EcoGene:EG13928" /db_xref="GeneID:946142" CDS 1673913..1674947 /gene="tqsA" /locus_tag="b1601" /gene_synonym="ECK1596; JW1593; ydgG" /function="putative transport; Not classified" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="pheromone AI-2 transporter" /protein_id="NP_416118.1" /db_xref="GI:16129559" /db_xref="ASAP:ABE-0005350" /db_xref="UniProtKB/Swiss-Prot:P0AFS5" /db_xref="EcoGene:EG13928" /db_xref="GeneID:946142" /translation="MAKPIITLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIA VILNPLVQHMVRWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIM TPLQALEPLLQRVGIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLF MLLEVPQLPGKFQQMMARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAAL DVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFG NILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQTAGGQSI AVLLSDLNKE" gene complement(1674972..1676360) /gene="pntB" /locus_tag="b1602" /gene_synonym="ECK1597; JW1594" /db_xref="EcoGene:EG10745" /db_xref="GeneID:946144" CDS complement(1674972..1676360) /gene="pntB" /locus_tag="b1602" /gene_synonym="ECK1597; JW1594" /EC_number="1.6.1.2" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /experiment="N-terminus verified by Edman degradation: PMID 3525165" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="pyridine nucleotide transhydrogenase, beta subunit" /protein_id="NP_416119.1" /db_xref="GI:16129560" /db_xref="ASAP:ABE-0005352" /db_xref="UniProtKB/Swiss-Prot:P0AB67" /db_xref="EcoGene:EG10745" /db_xref="GeneID:946144" /translation="MSGGLVTAAYIVAAILFIFSLAGLSKHETSRQGNNFGIAGMAIA LIATIFGPDTGNVGWILLAMVIGGAIGIRLAKKVEMTEMPELVAILHSFVGLAAVLVG FNSYLHHDAGMAPILVNIHLTEVFLGIFIGAVTFTGSVVAFGKLCGKISSKPLMLPNR HKMNLAALVVSFLLLIVFVRTDSVGLQVLALLIMTAIALVFGWHLVASIGGADMPVVV SMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFG TDGSSTGDDQEVGEHREITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLR ARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGAND TVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGD AKASVDAILKAL" gene complement(1676371..1677903) /gene="pntA" /locus_tag="b1603" /gene_synonym="ECK1598; JW1595" /db_xref="EcoGene:EG10744" /db_xref="GeneID:946628" CDS complement(1676371..1677903) /gene="pntA" /locus_tag="b1603" /gene_synonym="ECK1598; JW1595" /EC_number="1.6.1.2" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /experiment="N-terminus verified by Edman degradation: PMID 3525165" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="pyridine nucleotide transhydrogenase, alpha subunit" /protein_id="NP_416120.1" /db_xref="GI:16129561" /db_xref="ASAP:ABE-0005354" /db_xref="UniProtKB/Swiss-Prot:P07001" /db_xref="EcoGene:EG10744" /db_xref="GeneID:946628" /translation="MRIGIPRERLTNETRVAATPKTVEQLLKLGFTVAVESGAGQLAS FDDKAFVQAGAEIVEGNSVWQSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQNPELM QKLAERNVTVMAMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAA GKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE EAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMK AGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLPGRLPTQSSQLYGTNLVNL LKLLCKEKDGNITVDFDDVVIRGVTVIRAGEITWPAPPIQVSAQPQAAQKAAPEVKTE EKCTCSPWRKYALMALAIILFGWMASVAPKEFLGHFTVFALACVVGYYVVWNVSHALH TPLMSVTNAISGIIVVGALLQIGQGGWVSFLSFIAVLIASINIFGGFTVTQRMLKMFR KN" gene 1678427..1679371 /gene="ydgH" /locus_tag="b1604" /gene_synonym="ECK1599; JW1596" /db_xref="EcoGene:EG13929" /db_xref="GeneID:945117" CDS 1678427..1679371 /gene="ydgH" /locus_tag="b1604" /gene_synonym="ECK1599; JW1596" /codon_start=1 /transl_table=11 /product="DUF1471 family periplasmic protein" /protein_id="NP_416121.1" /db_xref="GI:16129562" /db_xref="ASAP:ABE-0005359" /db_xref="UniProtKB/Swiss-Prot:P76177" /db_xref="EcoGene:EG13929" /db_xref="GeneID:945117" /translation="MKLKNTLLASALLSAMAFSVNAATELTPEQAAAVKPFDRVVVTG RFNAIGEAVKAVSRRADKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNR VINGVVELPKDQAVLIEPFDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDA NQGGNQRITAFIYKKDAKKRIVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTA SPSSEVGRFFETQSSKGGRYTVTLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTE VSYQVAKRAAKKGAKYYHITRQWQERGNNLTVSADLYK" gene 1679557..1680939 /gene="ydgI" /locus_tag="b1605" /gene_synonym="arcD; ECK1600; JW1597" /db_xref="EcoGene:EG13930" /db_xref="GeneID:945159" CDS 1679557..1680939 /gene="ydgI" /locus_tag="b1605" /gene_synonym="arcD; ECK1600; JW1597" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative arginine/ornithine antiporter" /codon_start=1 /transl_table=11 /product="putative arginine/ornithine antiporter transporter" /protein_id="NP_416122.1" /db_xref="GI:16129563" /db_xref="ASAP:ABE-0005362" /db_xref="UniProtKB/Swiss-Prot:P0AAE5" /db_xref="EcoGene:EG13930" /db_xref="GeneID:945159" /translation="MEKKLGLSALTALVLSSMLGAGVFSLPQNMAAVASPAALLIGWG ITGAGILLLAFAMLILTRIRPELDGGIFTYAREGFGELIGFCSAWGYWLCAVIANVSY LVIVFSALSFFTDTPELRLFGDGNTWQSIVGASALLWIVHFLILRGVQTAASINLVAT LAKLLPLGLFVVLAMMMFKLDTFKLDFTGLALGVPVWEQVKNTMLITLWVFIGVEGAV VVSARARNKRDVGKATLLAVLSALGVYLLVTLLSLGVVARPELAEIRNPSMAGLMVEM MGPWGEIIIAAGLIVSVCGAYLSWTIMAAEVPFLAATHKAFPRIFARQNAQAAPSASL WLTNICVQICLVLIWLTGSDYNTLLTIASEMILVPYFLVGAFLLKIATRPLHKAVGVG ACIYGLWLLYASGPMHLLLSVVLYAPGLLVFLYARKTHTHDNVLNRQEMVLIGMLLIA SVPATWMLVG" gene 1680976..1681698 /gene="folM" /locus_tag="b1606" /gene_synonym="ECK1601; JW1598; ydgB" /db_xref="EcoGene:EG13189" /db_xref="GeneID:949096" CDS 1680976..1681698 /gene="folM" /locus_tag="b1606" /gene_synonym="ECK1601; JW1598; ydgB" /EC_number="1.5.1.3" /function="enzyme; Not classified" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="dihydromonapterin reductase, NADPH-dependent; dihydrofolate reductase isozyme" /protein_id="NP_416123.1" /db_xref="GI:16129564" /db_xref="ASAP:ABE-0005364" /db_xref="UniProtKB/Swiss-Prot:P0AFS3" /db_xref="EcoGene:EG13189" /db_xref="GeneID:949096" /translation="MGKTQPLPILITGGGRRIGLALAWHFINQKQPVIVSYRTHYPAI DGLINAGAQCIQADFSTNDGVMAFADEVLKSTHGLRAILHNASAWMAEKPGAPLADVL ACMMQIHVNTPYLLNHALERLLRGHGHAASDIIHFTDYVVERGSDKHIAYAASKAALD NMTRSFARKLAPEVKVNSIAPSLILFNEHDDAEYRQQALNKSLMKTAPGEKEVIDLVD YLLTSCFVTGRSFPLDGGRHLR" gene complement(1681695..1682030) /gene="ydgC" /locus_tag="b1607" /gene_synonym="ECK1602; JW1599" /db_xref="EcoGene:EG13191" /db_xref="GeneID:945156" CDS complement(1681695..1682030) /gene="ydgC" /locus_tag="b1607" /gene_synonym="ECK1602; JW1599" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="GlpM family inner membrane protein" /protein_id="NP_416124.1" /db_xref="GI:16129565" /db_xref="ASAP:ABE-0005366" /db_xref="UniProtKB/Swiss-Prot:P0ACX0" /db_xref="EcoGene:EG13191" /db_xref="GeneID:945156" /translation="MGLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHY IVASERGIEALRATIIFSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWV LIICWIKLH" gene 1682159..1682878 /gene="rstA" /locus_tag="b1608" /gene_synonym="ECK1603; JW1600; urpT" /db_xref="EcoGene:EG13190" /db_xref="GeneID:946199" CDS 1682159..1682878 /gene="rstA" /locus_tag="b1608" /gene_synonym="ECK1603; JW1600; urpT" /function="regulator; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="response transcriptional regulatory protein (RstB sensor)" /codon_start=1 /transl_table=11 /product="response regulator of RstAB two-component system" /protein_id="NP_416125.2" /db_xref="GI:145698268" /db_xref="ASAP:ABE-0005370" /db_xref="UniProtKB/Swiss-Prot:P52108" /db_xref="EcoGene:EG13190" /db_xref="GeneID:946199" /translation="MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRE NPDLVLLDIMLPGKDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKT TPPAVLLARLRLHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEI SLSTADFELLWELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAA EPYRIKTVRNKGYLFAPHAWE" gene 1682882..1684183 /gene="rstB" /locus_tag="b1609" /gene_synonym="ECK1604; JW1601; uspT" /db_xref="EcoGene:EG11233" /db_xref="GeneID:948870" CDS 1682882..1684183 /gene="rstB" /locus_tag="b1609" /gene_synonym="ECK1604; JW1601; uspT" /function="regulator; Global regulatory functions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006464 - protein modification process" /note="sensor histidine protein kinase (RstA regulator)" /codon_start=1 /transl_table=11 /product="sensory histidine kinase of RstAB two-component system" /protein_id="NP_416126.1" /db_xref="GI:16129567" /db_xref="ASAP:ABE-0005372" /db_xref="UniProtKB/Swiss-Prot:P18392" /db_xref="EcoGene:EG11233" /db_xref="GeneID:948870" /translation="MKKLFIQFYLLLFVCFLVMSLLVGLVYKFTAERAGKQSLDDLMN SSLYLMRSELREIPPHDWGKTLKEMDLNLSFDLRVEPLSKYHLDDISMHRLRGGEIVA LDDQYTFLQRIPRSHYVLAVGPVPYLYYLHQMRLLDIALIAFIAISLAFPVFIWMRPH WQDMLKLEAAAQRFGDGHLNERIHFDEGSSFERLGVAFNQMADNINALIASKKQLIDG IAHELRTPLVRLRYRLEMSDNLSAAESQALNRDISQLEALIEELLTYARLDRPQNELH LSEPDLPLWLSTHLADIQAVTPDKTVRIKTLVQGHYAALDMRLMERVLDNLLNNALRY CHSTVETSLLLSGNRATLIVEDDGPGIAPENREHIFEPFVRLDPSRDRSTGGCGLGLA IVHSIALAMGGTVNCDTSELGGARFSFSWPLWHNIPQFTSA" gene 1684259..1685188 /gene="tus" /locus_tag="b1610" /gene_synonym="ECK1605; JW1602; tau" /db_xref="EcoGene:EG11038" /db_xref="GeneID:945135" CDS 1684259..1685188 /gene="tus" /locus_tag="b1610" /gene_synonym="ECK1605; JW1602; tau" /function="factor; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication" /note="DNA-binding protein; inhibition of replication at Ter sites" /codon_start=1 /transl_table=11 /product="inhibitor of replication at Ter, DNA-binding protein" /protein_id="NP_416127.1" /db_xref="GI:16129568" /db_xref="ASAP:ABE-0005378" /db_xref="UniProtKB/Swiss-Prot:P16525" /db_xref="EcoGene:EG11038" /db_xref="GeneID:945135" /translation="MARYDLVDRLNTTFRQMEQELAIFAAHLEQHKLLVARVFSLPEV KKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQV DNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLT VLHDPATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQD IAALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGE LLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD" gene complement(1685185..1686588) /gene="fumC" /locus_tag="b1611" /gene_synonym="ECK1606; JW1603" /db_xref="EcoGene:EG10358" /db_xref="GeneID:946147" CDS complement(1685185..1686588) /gene="fumC" /locus_tag="b1611" /gene_synonym="ECK1606; JW1603" /EC_number="4.2.1.2" /function="enzyme; Energy metabolism, carbon: TCA cycle" /experiment="N-terminus verified by Edman degradation: PMID 1917897,8496960" /GO_process="GO:0009061 - anaerobic respiration; GO:0006113 - fermentation; GO:0006099 - tricarboxylic acid cycle" /note="fumarase C= fumarate hydratase Class II; isozyme" /codon_start=1 /transl_table=11 /product="fumarate hydratase (fumarase C),aerobic Class II" /protein_id="NP_416128.1" /db_xref="GI:16129569" /db_xref="ASAP:ABE-0005380" /db_xref="UniProtKB/Swiss-Prot:P05042" /db_xref="EcoGene:EG10358" /db_xref="GeneID:946147" /translation="MNTVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSL IHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQS NMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQL IPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYS LPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQ AHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALT MLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIE PNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEF DSWVRPEQMVGSMKAGR" gene complement(1686731..1688377) /gene="fumA" /locus_tag="b1612" /gene_synonym="ECK1607; JW1604" /db_xref="EcoGene:EG10356" /db_xref="GeneID:946826" CDS complement(1686731..1688377) /gene="fumA" /locus_tag="b1612" /gene_synonym="ECK1607; JW1604" /EC_number="4.2.1.2" /function="enzyme; Energy metabolism, carbon: TCA cycle" /GO_process="GO:0006099 - tricarboxylic acid cycle" /note="fumarase A = fumarate hydratase Class I; aerobic isozyme" /codon_start=1 /transl_table=11 /product="fumarate hydratase (fumarase A), aerobic Class I" /protein_id="NP_416129.1" /db_xref="GI:16129570" /db_xref="ASAP:ABE-0005392" /db_xref="UniProtKB/Swiss-Prot:P0AC33" /db_xref="EcoGene:EG10356" /db_xref="GeneID:946826" /translation="MSNKPFHYQAPFPLKKDDTEYYLLTSEHVSVSEFEGQEILKVAP EALTLLARQAFHDASFMLRPAHQQQVADILRDPEASENDKYVALQFLRNSDIAAKGVL PTCQDTGTAIIVGKKGQRVWTGGGDEAALARGVYNTYIEDNLRYSQNAPLDMYKEVNT GTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALLTPGKLKNYLVEKMRT LGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNEHGQAFRDVELEKEL LIEAQNLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINRQGIW IEKLEHNPGKYIPEELRKAGEGEAVRVDLNRPMKEILAQLSQYPVSTRLSLNGTIIVG RDIAHAKLKERMDNGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGPTTAGRMDSYVDQ LQAQGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKSLECVEYPEL GMEAIWKIEVEDFPAFILVDDKGNDFFQQIQLTQCTRCVK" gene 1688576..1689751 /gene="manA" /locus_tag="b1613" /gene_synonym="ECK1608; JW1605; pmi" /db_xref="EcoGene:EG10566" /db_xref="GeneID:944840" CDS 1688576..1689751 /gene="manA" /locus_tag="b1613" /gene_synonym="ECK1608; JW1605; pmi" /EC_number="5.3.1.8" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0009242 - colanic acid biosynthetic process; GO:0009226 - nucleotide-sugar biosynthetic process; GO:0009269 - response to desiccation" /codon_start=1 /transl_table=11 /product="mannose-6-phosphate isomerase" /protein_id="NP_416130.3" /db_xref="GI:49176125" /db_xref="ASAP:ABE-0005398" /db_xref="UniProtKB/Swiss-Prot:P00946" /db_xref="EcoGene:EG10566" /db_xref="GeneID:944840" /translation="MQKLINSVQNYAWGSKTALTELYGMENPSSQPMAELWMGAHPKS SSRVQNAAGDIVSLRDVIESDKSTLLGEAVAKRFGELPFLFKVLCAAQPLSIQVHPNK HNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSEIVSLLQP VAGAHPAIAHFLQQPDAERLSELFASLLNMQGEEKSRALAILKSALDSQQGEPWQTIR LISEFYPEDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAG LTPKYIDIPELVANVKFEAKPANQLLTQPVKQGAELDFPIPVDDFAFSLHDLSDKETT ISQQSAAILFCVEGDATLWKGSQQLQLKPGESAFIAANESPVTVKGHGRLARVYNKL" gene 1689852..1691360 /gene="ydgA" /locus_tag="b1614" /gene_synonym="ECK1609; JW1606" /db_xref="EcoGene:EG12457" /db_xref="GeneID:946172" CDS 1689852..1691360 /gene="ydgA" /locus_tag="b1614" /gene_synonym="ECK1609; JW1606" /codon_start=1 /transl_table=11 /product="DUF945 family protein" /protein_id="NP_416131.1" /db_xref="GI:16129572" /db_xref="ASAP:ABE-0005402" /db_xref="UniProtKB/Swiss-Prot:P77804" /db_xref="EcoGene:EG12457" /db_xref="GeneID:946172" /translation="MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQL KLTAPESNLEVSYQNYHRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFP LAQLKKLNLIPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLK PLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLK TDGSSTLASFGERVGNQKLSLEKMTISVEGKELALLEGMEISGKSDLVNDGKTINSQL DYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYNAQTQALLAQPEIANNPELY QEKVTEAFFSALPLMLKGDPVITIAPLSWKNSQGESALNLSLFLKDPATTKEAPQTLA QEVDRSVKSLDAKLTIPVDMATEFMTQVAKLEGYQEDQAKKLAKQQVEGASAMGQMFR LTTLQDNTITTSLQYANGQITLNGQKMSLEDFVGMFAMPALNVPAVPAIPQQ" repeat_region 1691425..1691521 /note="RIP126 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(1691586..1692851) /gene="uidC" /locus_tag="b1615" /gene_synonym="ECK1610; gusC; JW1607" /db_xref="EcoGene:EG12668" /db_xref="GeneID:944820" CDS complement(1691586..1692851) /gene="uidC" /locus_tag="b1615" /gene_synonym="ECK1610; gusC; JW1607" /function="membrane; Inner membrane" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="membrane-associated protein" /codon_start=1 /transl_table=11 /product="putative outer membrane porin for beta-glucuronides porin protein" /protein_id="NP_416132.2" /db_xref="GI:90111306" /db_xref="ASAP:ABE-0005405" /db_xref="UniProtKB/Swiss-Prot:Q47706" /db_xref="EcoGene:EG12668" /db_xref="GeneID:944820" /translation="MRKIVAMAVICLTAASGLTSAYAAQLADDEAGLRIRLKNELRRA DKPSAGAGRDIYAWVQGGLLDFNSGYYSNIIGVEGGAYYVYKLGARADMSTRWYLDGD KSFGFALGAVKIKPSENSLLKLGRFGTDYSYGSLPYRIPLMAGSSQRTLPTVSEGALG YWALTPNIDLWGMWRSRVFLWTDSTTGIRDEGVYNSQTGKYDKHRARSFLAASWHDDT SRYSLGASVQKDVSNQIQSILEKSIPLDPNYTLKGELLGFYAQLEGLSRNTSQPNETA LVSGQLTWNAPWGSVFGSGGYLRHAMNGAVVDTDIGYPFSLSLDRNREGMQSWQLGVN YRLTPQFTLTFAPIVTRGYESSKRDVRIEGTGILGGMNYRVSEGPLQGMNFFLAADKG REKRDGSTLGDRLNYWDVKMSIQYDFMLK" gene complement(1692890..1694263) /gene="uidB" /locus_tag="b1616" /gene_synonym="ECK1611; gusB; JW1608; uidP" /db_xref="EcoGene:EG11658" /db_xref="GeneID:947484" CDS complement(1692890..1694263) /gene="uidB" /locus_tag="b1616" /gene_synonym="ECK1611; gusB; JW1608; uidP" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /experiment="N-terminus verified by Edman degradation: PMID 15774881" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="glucuronide permease" /codon_start=1 /transl_table=11 /product="glucuronide transporter" /protein_id="NP_416133.1" /db_xref="GI:16129574" /db_xref="ASAP:ABE-0005407" /db_xref="UniProtKB/Swiss-Prot:P0CE44" /db_xref="EcoGene:EG11658" /db_xref="GeneID:947484" /translation="MNQQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAA AAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVLTD WSHGSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFV CLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLN ISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVG TVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG VTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGYI ANQVQTPEVIMGIRTSIALVPCGFMLLAFVIIWFYPLTDKKFKEIVVEIDNRKKVQQQ LISDITN" gene complement(1694260..1696071) /gene="uidA" /locus_tag="b1617" /gene_synonym="ECK1612; gurA; gusA; JW1609" /db_xref="EcoGene:EG11055" /db_xref="GeneID:946149" CDS complement(1694260..1696071) /gene="uidA" /locus_tag="b1617" /gene_synonym="ECK1612; gurA; gusA; JW1609" /EC_number="3.2.1.31" /function="enzyme; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 3105604,3534890" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="beta-D-glucuronidase" /protein_id="NP_416134.1" /db_xref="GI:16129575" /db_xref="ASAP:ABE-0005410" /db_xref="UniProtKB/Swiss-Prot:P05804" /db_xref="EcoGene:EG11055" /db_xref="GeneID:946149" /translation="MLRPVETPTREIKKLDGLWAFSLDRENCGIDQRWWESALQESRA IAVPGSFNDQFADADIRNYAGNVWYQREVFIPKGWAGQRIVLRFDAVTHYGKVWVNNQ EVMEHQGGYTPFEADVTPYVIAGKSVRITVCVNNELNWQTIPPGMVITDENGKKKQSY FHDFFNYAGIHRSVMLYTTPNTWVDDITVVTHVAQDCNHASVDWQVVANGDVSVELRD ADQQVVATGQGTSGTLQVVNPHLWQPGEGYLYELCVTAKSQTECDIYPLRVGIRSVAV KGEQFLINHKPFYFTGFGRHEDADLRGKGFDNVLMVHDHALMDWIGANSYRTSHYPYA EEMLDWADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAI KELIARDKNHPSVVMWSIANEPDTRPQGAREYFAPLAEATRKLDPTRPITCVNVMFCD AHTDTISDLFDVLCLNRYYGWYVQSGDLETAEKVLEKELLAWQEKLHQPIIITEYGVD TLAGLHSMYTDMWSEEYQCAWLDMYHRVFDRVSAVVGEQVWNFADFATSQGILRVGGN KKGIFTRDRKPKSAAFLLQKRWTGMNFGEKPQQGGKQ" gene complement(1696462..1697052) /gene="uidR" /locus_tag="b1618" /gene_synonym="ECK1613; gusR; JW1610" /db_xref="EcoGene:EG12667" /db_xref="GeneID:946150" CDS complement(1696462..1697052) /gene="uidR" /locus_tag="b1618" /gene_synonym="ECK1613; gusR; JW1610" /function="regulator; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006350 - transcription" /note="repressor for uid operon" /codon_start=1 /transl_table=11 /product="transcriptional repressor" /protein_id="NP_416135.1" /db_xref="GI:16129576" /db_xref="ASAP:ABE-0005415" /db_xref="UniProtKB/Swiss-Prot:P0ACT6" /db_xref="EcoGene:EG12667" /db_xref="GeneID:946150" /translation="MMDNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAIS PGTLYHHFISKEALIQAIILQDQERALARFREPIEGIHFVDYMVESIVSLTHEAFGQR ALVVEIMAEGMRNPQVAAMLKNKHMTITEFVAQRMRDAQQKGEISPDINTAMTSRLLL DLTYGVLADIEAEDLAREASFAQGLRAMIGGILTAS" gene complement(1697273..1698040) /gene="hdhA" /locus_tag="b1619" /gene_synonym="ECK1614; hsd; hsdH; JW1611" /db_xref="EcoGene:EG10425" /db_xref="GeneID:946151" CDS complement(1697273..1698040) /gene="hdhA" /locus_tag="b1619" /gene_synonym="ECK1614; hsd; hsdH; JW1611" /EC_number="1.1.1.159" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /experiment="N-terminus verified by Edman degradation: PMID 2007545,9740056" /GO_component="GO:0005737 - cytoplasm" /note="NAD-dependent 7alpha-hydroxysteroid dehydrogenase, dehydroxylation of bile acids" /codon_start=1 /transl_table=11 /product="7-alpha-hydroxysteroid dehydrogenase, NAD-dependent" /protein_id="NP_416136.1" /db_xref="GI:16129577" /db_xref="ASAP:ABE-0005419" /db_xref="UniProtKB/Swiss-Prot:P0AET8" /db_xref="EcoGene:EG10425" /db_xref="GeneID:946151" /translation="MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN ADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPK PFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYA SSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRL GQPQDIANAALFLCSPAASWVSGQILTVSGGGVQELN" gene complement(1698152..1699180) /gene="malI" /locus_tag="b1620" /gene_synonym="ECK1615; JW1612" /db_xref="EcoGene:EG10557" /db_xref="GeneID:947104" CDS complement(1698152..1699180) /gene="malI" /locus_tag="b1620" /gene_synonym="ECK1615; JW1612" /function="regulator; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006350 - transcription" /note="maltose regulon regulatory protein" /codon_start=1 /transl_table=11 /product="transcriptional repressor of Mal regulon" /protein_id="NP_416137.1" /db_xref="GI:16129578" /db_xref="ASAP:ABE-0005421" /db_xref="UniProtKB/Swiss-Prot:P18811" /db_xref="EcoGene:EG10557" /db_xref="GeneID:947104" /translation="MATAKKITIHDVALAAGVSVSTVSLVLSGKGRISTATGERVNAA IEELGFVRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLHG GKDGEQLAQRFSLLLNQGVDGVVIAGAAGSSDDLRRMAEEKAIPVIFASRASYLDDVD TVRPDNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSD WVLECTSSQKQAAEAITALLRHNPTISAVVCYNETIAMGAWFGLLKAGRQSGESGVDR YFEQQVSLAAFTDATPTTLDDIPVTWASTPARELGITLADRMMQKITHEETHSRNLII PARLIAAK" gene 1699355..1700947 /gene="malX" /locus_tag="b1621" /gene_synonym="ECK1616; JW1613" /db_xref="EcoGene:EG10563" /db_xref="GeneID:946009" CDS 1699355..1700947 /gene="malX" /locus_tag="b1621" /gene_synonym="ECK1616; JW1613" /EC_number="2.7.1.69" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="PTS system, maltose and glucose-specific IIABC component" /codon_start=1 /transl_table=11 /product="maltose and glucose-specific PTS enzyme IIB component and IIC component" /protein_id="NP_416138.1" /db_xref="GI:16129579" /db_xref="ASAP:ABE-0005429" /db_xref="UniProtKB/Swiss-Prot:P19642" /db_xref="EcoGene:EG10563" /db_xref="GeneID:946009" /translation="MTAKTAPKVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSS HDVITLIPVLGNPVLQAIFTWMSKIGSFAFSFLPVMFCIAIPLGLARENKGVAAFAGF IGYAVMNLAVNFWLTNKGILPTTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWM LHERFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINS AGDFGPMLFGTGERLLLPFGLHHILVALIRFTDAGGTQEVCGQTVSGALTIFQAQLSC PTTHGFSESATRFLSQGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLISGLIACVV GGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNTDGNIIDFVVFGILHG LSTKWYMVPVVAAIWFVVYYVIFRFAITRFNLKTPGRDSEVASSIEKAVAGAPGKSGY NVPAILEALGGADNIVSLDNCITRLRLSVKDMSLVNVQALKDNRAIGVVQLNQHNLQV VIGPQVQSVKDEMAGLMHTVQA" gene 1700957..1702129 /gene="malY" /locus_tag="b1622" /gene_synonym="ECK1617; JW1614" /db_xref="EcoGene:EG10564" /db_xref="GeneID:945937" CDS 1700957..1702129 /gene="malY" /locus_tag="b1622" /gene_synonym="ECK1617; JW1614" /EC_number="4.4.1.8" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="cystathionine beta-lyase; maltose regulon modulator" /codon_start=1 /transl_table=11 /product="PLP-dependent beta-cystathionase and maltose regulon regulator" /protein_id="NP_416139.1" /db_xref="GI:16129580" /db_xref="ASAP:ABE-0005432" /db_xref="UniProtKB/Swiss-Prot:P23256" /db_xref="EcoGene:EG10564" /db_xref="GeneID:945937" /translation="MFDFSKVVDRHGTWCTQWDYVADRFGTADLLPFTISDMDFATAP CIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSE LIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWS NVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTA HIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNID DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR" gene 1702233..1703234 /gene="add" /locus_tag="b1623" /gene_synonym="ECK1618; JW1615" /db_xref="EcoGene:EG10030" /db_xref="GeneID:945851" CDS 1702233..1703234 /gene="add" /locus_tag="b1623" /gene_synonym="ECK1618; JW1615" /EC_number="3.5.4.4" /function="enzyme; Salvage of nucleosides and nucleotides" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="adenosine deaminase" /protein_id="NP_416140.1" /db_xref="GI:16129581" /db_xref="ASAP:ABE-0005435" /db_xref="UniProtKB/Swiss-Prot:P22333" /db_xref="EcoGene:EG10030" /db_xref="GeneID:945851" /translation="MIDTTLPLTDIHRHLDGNIRPQTILELGRQYNISLPAQSLETLI PHVQVIANEPDLVSFLTKLDWGVKVLASLDACRRVAFENIEDAARHGLHYVELRFSPG YMAMAHQLPVAGVVEAVIDGVREGCRTFGVQAKLIGIMSRTFGEAACQQELEAFLAHR DQITALDLAGDELGFPGSLFLSHFNRARDAGWHITVHAGEAAGPESIWQAIRELGAER IGHGVKAIEDRALMDFLAEQQIGIESCLTSNIQTSTVAELAAHPLKTFLEHGIRASIN TDDPGVQGVDIIHEYTVAAPAAGLSREQIRQAQINGLEMAFLSAEEKRALREKVAAK" gene complement(1703268..1704308) /gene="ydgJ" /locus_tag="b1624" /gene_synonym="ECK1619; JW5265" /db_xref="EcoGene:EG13931" /db_xref="GeneID:947164" CDS complement(1703268..1704308) /gene="ydgJ" /locus_tag="b1624" /gene_synonym="ECK1619; JW5265" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_416141.4" /db_xref="GI:90111307" /db_xref="ASAP:ABE-0005437" /db_xref="UniProtKB/Swiss-Prot:P77376" /db_xref="EcoGene:EG13931" /db_xref="GeneID:947164" /translation="MSDNIRVGLIGYGYASKTFHAPLIAGTPGQELAVISSSDETKVK ADWPTVTVVSEPKHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLS QARELDALAKSLGRVLSVFHNRRWDSDFLTLKGLLAEGVLGEVAYFESHFDRFRPQVR DRWREQGGPGSGIWYDLAPHLLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSY PQRRVILHGTMLAAAESARYIVHGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRD GVLTRVEGEERVEETLLTVPGNYPAYYAAIRDALNGDGENPVPASQAIQVMELIELGI ESAKHRATLCLA" gene 1704551..1704676 /gene="blr" /locus_tag="b4409" /gene_synonym="ECK1620; JW5963" /db_xref="EcoGene:EG14389" /db_xref="GeneID:2847682" CDS 1704551..1704676 /gene="blr" /locus_tag="b4409" /gene_synonym="ECK1620; JW5963" /note="beta-lactam resistance protein" /codon_start=1 /transl_table=11 /product="beta-lactam resistance membrane protein; divisome-associated protein" /protein_id="YP_025303.1" /db_xref="GI:49176127" /db_xref="ASAP:ABE-0047212" /db_xref="UniProtKB/Swiss-Prot:P56976" /db_xref="EcoGene:EG14389" /db_xref="GeneID:2847682" /translation="MNRLIELTGWIVLVVSVILLGVASHIDNYQPPEQSASVQHK" gene 1704949..1705164 /gene="cnu" /locus_tag="b1625" /gene_synonym="ECK1621; JW1617; ydgT" /db_xref="EcoGene:EG14303" /db_xref="GeneID:946152" CDS 1704949..1705164 /gene="cnu" /locus_tag="b1625" /gene_synonym="ECK1621; JW1617; ydgT" /codon_start=1 /transl_table=11 /product="nucleoid-associated oriC-binding protein; H-NS and StpA stabilizing factor" /protein_id="NP_416142.1" /db_xref="GI:16129583" /db_xref="ASAP:ABE-0005443" /db_xref="UniProtKB/Swiss-Prot:P64467" /db_xref="EcoGene:EG14303" /db_xref="GeneID:946152" /translation="MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAAD HRRAELVSGGRLFDLGQVPKSVWHYVQ" gene 1705250..1705690 /gene="ydgK" /locus_tag="b1626" /gene_synonym="ECK1622; JW1618; rsxP" /db_xref="EcoGene:EG13932" /db_xref="GeneID:946154" CDS 1705250..1705690 /gene="ydgK" /locus_tag="b1626" /gene_synonym="ECK1622; JW1618; rsxP" /codon_start=1 /transl_table=11 /product="DUF2569 family inner membrane protein" /protein_id="NP_416143.2" /db_xref="GI:90111308" /db_xref="ASAP:ABE-0005447" /db_xref="UniProtKB/Swiss-Prot:P76180" /db_xref="EcoGene:EG13932" /db_xref="GeneID:946154" /translation="MTTTTPQRIGGWLLGPLAWLLVALLSTTLALLLYTAALSSPQTF QTLGGQALTTQILWGVSFITAIALWYYTLWLTIAFFKRRRCVPKHYIIWLLISVLLAV KAFAFSPVEDGIAVRQLLFTLLATALIVPYFKRSSRVKATFVNP" gene 1705767..1706348 /gene="rsxA" /locus_tag="b1627" /gene_synonym="ECK1623; JW1619; rnfA; ydgL" /db_xref="EcoGene:EG13933" /db_xref="GeneID:946148" CDS 1705767..1706348 /gene="rsxA" /locus_tag="b1627" /gene_synonym="ECK1623; JW1619; rnfA; ydgL" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="SoxR iron-sulfur cluster reduction factor component; inner membrane protein of electron transport complex" /protein_id="NP_416144.1" /db_xref="GI:16129585" /db_xref="ASAP:ABE-0005450" /db_xref="UniProtKB/Swiss-Prot:P0A766" /db_xref="EcoGene:EG13933" /db_xref="GeneID:946148" /translation="MTDYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLA TTFVMTLASICAWLIDTWILIPLNLIYLRTLAFILVIAVVVQFTEMVVRKTSPVLYRL LGIFLPLITTNCAVLGVALLNINLGHNFLQSALYGFSAAVGFSLVMVLFAAIRERLAV ADVPAPFRGNAIALITAGLMSLAFMGFSGLVKL" gene 1706348..1706926 /gene="rsxB" /locus_tag="b1628" /gene_synonym="ECK1624; JW1620; rnfB; ydgM" /db_xref="EcoGene:EG13934" /db_xref="GeneID:946146" CDS 1706348..1706926 /gene="rsxB" /locus_tag="b1628" /gene_synonym="ECK1624; JW1620; rnfB; ydgM" /GO_function="GO:0009055 - electron carrier activity" /codon_start=1 /transl_table=11 /product="SoxR iron-sulfur cluster reduction factor component; putative iron-sulfur protein" /protein_id="NP_416145.1" /db_xref="GI:16129586" /db_xref="ASAP:ABE-0005452" /db_xref="UniProtKB/Swiss-Prot:P77223" /db_xref="EcoGene:EG13934" /db_xref="GeneID:946146" /translation="MNAIWIAVAAVSLLGLAFGAILGYASRRFAVEDDPVVEKIDEIL PQSQCGQCGYPGCRPYAEAISCNGEKINRCAPGGEAVMLKIAELLNVEPQPLDGEAQE ITPARMVAVIDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTH CISLQPVAETPDSWKWDLNTIPVRIIPVEHHA" gene 1706919..1709141 /gene="rsxC" /locus_tag="b1629" /gene_synonym="ECK1625; JW1621; rnfC; ydgN" /db_xref="EcoGene:EG13935" /db_xref="GeneID:946137" CDS 1706919..1709141 /gene="rsxC" /locus_tag="b1629" /gene_synonym="ECK1625; JW1621; rnfC; ydgN" /function="putative membrane; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="SoxR iron-sulfur cluster reduction factor component; putative membrane-associated NADH oxidoreductase of electron transport complex" /protein_id="NP_416146.1" /db_xref="GI:16129587" /db_xref="ASAP:ABE-0005454" /db_xref="UniProtKB/Swiss-Prot:P77611" /db_xref="EcoGene:EG13935" /db_xref="GeneID:946137" /translation="MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFV IPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSA LAELSVIIDADGEDCWIPRDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQG GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKP QAISMLRAVLADSNDISLRVIPTKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNV GTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRHLLNDAGFCPSADQM VIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLL PQQLYWFSKGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEE KRAAEAKARFEARQARLEREKAARLERHKSAAVQPAAKDKDAIAAALARVKEKQAQAT QPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVEAAIARA KARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVE AAIARAKARKLEQQQANAEPEQQVDPRKAAVEAAIARAKARKREQQPANAEPEEQVDP RKAAVEAAIARAKARKLEQQQANAVPEEQVDPRKAAVAAAIARAQAKKAAQQKVVNED " gene 1709142..1710200 /gene="rsxD" /locus_tag="b1630" /gene_synonym="ECK1626; JW1622; rnfD; ydgO" /db_xref="EcoGene:EG13936" /db_xref="GeneID:946134" CDS 1709142..1710200 /gene="rsxD" /locus_tag="b1630" /gene_synonym="ECK1626; JW1622; rnfD; ydgO" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /note="electron transport complex protein" /codon_start=1 /transl_table=11 /product="SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex" /protein_id="NP_416147.1" /db_xref="GI:16129588" /db_xref="ASAP:ABE-0005457" /db_xref="UniProtKB/Swiss-Prot:P76182" /db_xref="EcoGene:EG13936" /db_xref="GeneID:946134" /translation="MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTL VQILLASVSALLAEALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGT VFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQ VIFSGHTASGGDMNTLRLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGA GWQWVNLAWLAGGVWLLWQKAIRWHIPLSFLVTLALCAMLGWLFSPETLAAPQIHLLS GATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFAVLLANIT VPLIDYYTRPRVYGHRKG" gene 1710204..1710824 /gene="rsxG" /locus_tag="b1631" /gene_synonym="ECK1627; JW1623; rnfG; ydgP" /db_xref="EcoGene:EG13937" /db_xref="GeneID:946158" CDS 1710204..1710824 /gene="rsxG" /locus_tag="b1631" /gene_synonym="ECK1627; JW1623; rnfG; ydgP" /codon_start=1 /transl_table=11 /product="SoxR iron-sulfur cluster reduction factor component; putative membrane protein of electron transport complex" /protein_id="NP_416148.1" /db_xref="GI:16129589" /db_xref="ASAP:ABE-0005459" /db_xref="UniProtKB/Swiss-Prot:P77285" /db_xref="EcoGene:EG13937" /db_xref="GeneID:946158" /translation="MLKTIRKHGITLALFAAGSTGLTAAINQMTKTTIAEQASLQQKA LFDQVLPAERYNNALAQSCYLVTAPELGKGEHRVYIAKQDDKPVAAVLEATAPDGYSG AIQLLVGADFNGTVLGTRVTEHHETPGLGDKIELRLSDWITHFAGKKISGADDAHWAV KKDGGDFDQFTGATITPRAVVNAVKRAGLYAQTLPAQLSQLPACGE" gene 1710828..1711523 /gene="rsxE" /locus_tag="b1632" /gene_synonym="ECK1628; JW1624; rnfE; ydgQ" /db_xref="EcoGene:EG13938" /db_xref="GeneID:947509" CDS 1710828..1711523 /gene="rsxE" /locus_tag="b1632" /gene_synonym="ECK1628; JW1624; rnfE; ydgQ" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /note="electron transport complex protein" /codon_start=1 /transl_table=11 /product="SoxR iron-sulfur cluster reduction factor component; electron transport inner membrane NADH-quinone reductase" /protein_id="NP_416149.1" /db_xref="GI:16129590" /db_xref="ASAP:ABE-0005461" /db_xref="UniProtKB/Swiss-Prot:P77179" /db_xref="EcoGene:EG13938" /db_xref="GeneID:947509" /translation="MSEIKDVIVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLA TTLVLTLTNLTISTLRHWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFI PLIVTNCIVVGRAEAFAAKKGPALSALDGFSIGMGATCAMFVLGSLREIIGNGTLFDG ADALLGSWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAGKYLIDERMKKRRAEAA AERALPNGETGNV" gene 1711523..1712158 /gene="nth" /locus_tag="b1633" /gene_synonym="ECK1629; JW1625" /db_xref="EcoGene:EG10662" /db_xref="GeneID:947122" CDS 1711523..1712158 /gene="nth" /locus_tag="b1633" /gene_synonym="ECK1629; JW1625" /EC_number="4.2.99.18" /function="enzyme; Degradation of DNA" /experiment="N-terminus verified by Edman degradation: PMID 2669955" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006308 - DNA catabolic process; GO:0009314 - response to radiation" /note="endonuclease III; specific for apurinic and/or apyrimidinic sites" /codon_start=1 /transl_table=11 /product="DNA glycosylase and apyrimidinic (AP) lyase (endonuclease III)" /protein_id="NP_416150.1" /db_xref="GI:16129591" /db_xref="ASAP:ABE-0005463" /db_xref="UniProtKB/Swiss-Prot:P0AB83" /db_xref="EcoGene:EG10662" /db_xref="GeneID:947122" /translation="MNKAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATD VSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVE EKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEKVDI" gene 1712769..1714271 /gene="dtpA" /locus_tag="b1634" /gene_synonym="ECK1630; JW1626; tppB; ydgR" /db_xref="EcoGene:EG13939" /db_xref="GeneID:947436" CDS 1712769..1714271 /gene="dtpA" /locus_tag="b1634" /gene_synonym="ECK1630; JW1626; tppB; ydgR" /function="transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="dipeptide and tripeptide permease A" /protein_id="NP_416151.1" /db_xref="GI:16129592" /db_xref="ASAP:ABE-0005469" /db_xref="UniProtKB/Swiss-Prot:P77304" /db_xref="EcoGene:EG13939" /db_xref="GeneID:947436" /translation="MSTANQKPTESVSLNAFKQPKAFYLIFSIELWERFGYYGLQGIM AVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY ALVAWSGHDAGIVYMGMAAIAVGNGLFKANPSSLLSTCYEKNDPRLDGAFTMYYMSVN IGSFFSMIATPWLAAKYGWSVAFALSVVGLLITIVNFAFCQRWVKQYGSKPDFEPINY RNLLLTIIGVVALIAIATWLLHNQEVARMALGVVAFGIVVIFGKEAFAMKGAARRKMI VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGLAVEPEQYQALNPFWIIIGSP ILAAIYNKMGDTLPMPTKFAIGMVMCSGAFLILPLGAKFASDAGIVSVSWLVASYGLQ SIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGANLIGGYVAGMMAVPDNVTDP LMSLEVYGRVFLQIGVATAVIAVLMLLTAPKLHRMTQDDAADKAAKAAVA" gene 1714377..1714982 /gene="gstA" /locus_tag="b1635" /gene_synonym="ECK1631; gst; JW1627" /db_xref="EcoGene:EG12613" /db_xref="GeneID:945758" CDS 1714377..1714982 /gene="gstA" /locus_tag="b1635" /gene_synonym="ECK1631; gst; JW1627" /EC_number="2.5.1.18" /function="enzyme; Biosynthesis of cofactors, carriers: Thioredoxin, glutaredoxin, glutathione" /experiment="N-terminus verified by Edman degradation: PMID 2185038,7798255" /codon_start=1 /transl_table=11 /product="glutathionine S-transferase" /protein_id="NP_416152.1" /db_xref="GI:16129593" /db_xref="ASAP:ABE-0005473" /db_xref="UniProtKB/Swiss-Prot:P0A9D2" /db_xref="EcoGene:EG12613" /db_xref="GeneID:945758" /translation="MKLFYKPGACSLASHITLRESGKDFTLVSVDLMKKRLENGDDYF AVNPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVNSISRYKTIEWLNYIA TELHKGFTPLFRPDTPEEYKPTVRAQLEKKLQYVNEALKDEHWICGQRFTIADAYLFT VLRWAYAVKLNLEGLEHIAAFMQRMAERPEVQDALSAEGLK" gene complement(1715026..1715889) /gene="pdxY" /locus_tag="b1636" /gene_synonym="ECK1632; JW1628; ydgS" /db_xref="EcoGene:EG13940" /db_xref="GeneID:946162" CDS complement(1715026..1715889) /gene="pdxY" /locus_tag="b1636" /gene_synonym="ECK1632; JW1628; ydgS" /EC_number="2.7.1.35" /function="enzyme; Biosynthesis of cofactors, carriers: Pyridoxine" /note="pyridoxal kinase 2 / pyridoxine kinase" /codon_start=1 /transl_table=11 /product="pyridoxamine kinase" /protein_id="NP_416153.1" /db_xref="GI:16129594" /db_xref="ASAP:ABE-0005475" /db_xref="UniProtKB/Swiss-Prot:P77150" /db_xref="EcoGene:EG13940" /db_xref="GeneID:946162" /translation="MMKNILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNH TQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKA ANPQAKYFCDPVMGHPEKGCIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNN VEEAVLAARELIAQGPQIVLVKHLARAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQ PVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTKAMQEYELQVVAAQDRIA KPEHYFSATKL" gene complement(1715948..1717222) /gene="tyrS" /locus_tag="b1637" /gene_synonym="ECK1633; JW1629" /db_xref="EcoGene:EG11043" /db_xref="GeneID:948855" CDS complement(1715948..1717222) /gene="tyrS" /locus_tag="b1637" /gene_synonym="ECK1633; JW1629" /EC_number="6.1.1.1" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="tyrosine tRNA synthetase" /codon_start=1 /transl_table=11 /product="tyrosyl-tRNA synthetase" /protein_id="NP_416154.1" /db_xref="GI:16129595" /db_xref="ASAP:ABE-0005477" /db_xref="UniProtKB/Swiss-Prot:P0AGJ9" /db_xref="EcoGene:EG11043" /db_xref="GeneID:948855" /translation="MASSNLIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTA DSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVD KIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQR LNREDQGISFTEFSYNLLQGYDFACLNKQYGVVLQIGGSDQWGNITSGIDLTRRLHQN QVFGLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFT FMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLQAAKRITECLFSGSLSA LSEADFEQLAQDGVPMVEMEKGADLMQALVDSELQPSRGQARKTIASNAITINGEKQS DPEYFFKEEDRLFGRFTLLRRGKKNYCLICWK" gene complement(1717351..1718007) /gene="pdxH" /locus_tag="b1638" /gene_synonym="ECK1634; JW1630" /db_xref="EcoGene:EG11487" /db_xref="GeneID:946806" CDS complement(1717351..1718007) /gene="pdxH" /locus_tag="b1638" /gene_synonym="ECK1634; JW1630" /EC_number="1.4.3.5" /function="enzyme; Biosynthesis of cofactors, carriers: Pyridoxine" /GO_process="GO:0008615 - pyridoxine biosynthetic process" /note="pyridoxinephosphate oxidase" /codon_start=1 /transl_table=11 /product="pyridoxine 5'-phosphate oxidase" /protein_id="NP_416155.1" /db_xref="GI:16129596" /db_xref="ASAP:ABE-0005482" /db_xref="UniProtKB/Swiss-Prot:P0AFI7" /db_xref="EcoGene:EG11487" /db_xref="GeneID:946806" /translation="MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACE AKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLL FPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKF LELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP " gene complement(1718066..1718395) /gene="mliC" /locus_tag="b1639" /gene_synonym="ECK1635; JW1631; ydhA" /db_xref="EcoGene:EG11488" /db_xref="GeneID:946811" CDS complement(1718066..1718395) /gene="mliC" /locus_tag="b1639" /gene_synonym="ECK1635; JW1631; ydhA" /codon_start=1 /transl_table=11 /product="inhibitor of c-type lysozyme, membrane-bound; putative lipoprotein" /protein_id="NP_416156.4" /db_xref="GI:90111309" /db_xref="ASAP:ABE-0005485" /db_xref="UniProtKB/Swiss-Prot:P28224" /db_xref="EcoGene:EG11488" /db_xref="GeneID:946811" /translation="MTMKKLLIIILPVLLSGCSAFNQLVERMQTDTLEYQCDEKPLTV KLNNPRQEVSFVYDNQLLHLKQGISASGARYTDGIYVFWSKGDEATVYKRDRIVLNNC QLQNPQR" gene complement(1718493..1719602) /gene="anmK" /locus_tag="b1640" /gene_synonym="ECK1636; JW1632; ydhH" /db_xref="EcoGene:EG13942" /db_xref="GeneID:946810" CDS complement(1718493..1719602) /gene="anmK" /locus_tag="b1640" /gene_synonym="ECK1636; JW1632; ydhH" /function="enzyme; Murein recycling" /codon_start=1 /transl_table=11 /product="anhydro-N-acetylmuramic acid kinase" /protein_id="NP_416157.1" /db_xref="GI:16129598" /db_xref="ASAP:ABE-0005488" /db_xref="UniProtKB/Swiss-Prot:P77570" /db_xref="EcoGene:EG13942" /db_xref="GeneID:946810" /translation="MKSGRFIGVMSGTSLDGVDVVLATIDEHRVAQLASLSWPIPVSL KQAVLDICQGQQLTLSQFGQLDTQLGQLFADAVNALLKEQNLQARDIVAIGCHGQTVW HEPTGVAPHTLQIGDNNQIVARTGITVVGDFRRRDIALGGQGAPLVPAFHHALLAHPT ERRMVLNIGGIANLSLLIPGQPVGGYDTGPGNMLMDAWIWRQAGKPYDKDAEWARAGK VILPLLQNMLSDPYFSQPAPKSTGREYFNYGWLERHLRHFPGVDPRDVQATLAELTAV TISEQVLLSGGCERLMVCGGGSRNPLLMARLAALLPGTEVTTTDAVGISGDDMEALAF AWLAWRTLAGLPGNLPSVTGASQETVLGAIFPANP" gene 1719876..1720343 /gene="slyB" /locus_tag="b1641" /gene_synonym="ECK1637; JW1633" /db_xref="EcoGene:EG13409" /db_xref="GeneID:946801" CDS 1719876..1720343 /gene="slyB" /locus_tag="b1641" /gene_synonym="ECK1637; JW1633" /function="putative membrane; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative outer membrane protein" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein" /protein_id="YP_025304.1" /db_xref="GI:49176129" /db_xref="ASAP:ABE-0005493" /db_xref="UniProtKB/Swiss-Prot:P0A905" /db_xref="EcoGene:EG13409" /db_xref="GeneID:946801" /translation="MIKRVLVVSMVGLSLVGCVNNDTLSGDVYTASEAKQVQNVSYGT IVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTVGGGTGRSLATAAGAVAGGVAGQGV QSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSPGQRVVLASNGSQVTVSPR" gene complement(1720390..1720824) /gene="slyA" /locus_tag="b1642" /gene_synonym="ECK1638; JW5267" /db_xref="EcoGene:EG13408" /db_xref="GeneID:946167" CDS complement(1720390..1720824) /gene="slyA" /locus_tag="b1642" /gene_synonym="ECK1638; JW5267" /function="regulator; Adaptations, atypical conditions" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="transcriptional regulator for cryptic hemolysin" /codon_start=1 /transl_table=11 /product="global transcriptional regulator" /protein_id="NP_416159.2" /db_xref="GI:90111310" /db_xref="ASAP:ABE-0005495" /db_xref="UniProtKB/Swiss-Prot:P0A8W2" /db_xref="EcoGene:EG13408" /db_xref="GeneID:946167" /translation="MESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLP PDQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISE MEAVINKTRAEILHGISAEELEQLITLIAKLEHNIIELQAKG" gene 1721025..1721261 /gene="ydhI" /locus_tag="b1643" /gene_synonym="ECK1639; JW1635" /db_xref="EcoGene:EG13943" /db_xref="GeneID:947559" CDS 1721025..1721261 /gene="ydhI" /locus_tag="b1643" /gene_synonym="ECK1639; JW1635" /codon_start=1 /transl_table=11 /product="DUF1656 family putative inner membrane efflux pump associated protein" /protein_id="NP_416160.1" /db_xref="GI:16129601" /db_xref="ASAP:ABE-0005499" /db_xref="UniProtKB/Swiss-Prot:P64471" /db_xref="EcoGene:EG13943" /db_xref="GeneID:947559" /translation="MKFMLNATGLPLQDLVFGASVYFPPFFKAFAFGFVIWLVVHRLL RGWIYAGDIWHPLLMDLSLFAICVCLALAILIAW" gene 1721264..1722121 /gene="ydhJ" /locus_tag="b1644" /gene_synonym="ECK1640; JW1636" /db_xref="EcoGene:EG13944" /db_xref="GeneID:946499" CDS 1721264..1722121 /gene="ydhJ" /locus_tag="b1644" /gene_synonym="ECK1640; JW1636" /function="putative membrane; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative membrane protein" /codon_start=1 /transl_table=11 /product="putative membrane fusion protein (MFP) of YdhJK efflux pump" /protein_id="NP_416161.4" /db_xref="GI:90111311" /db_xref="ASAP:ABE-0005501" /db_xref="UniProtKB/Swiss-Prot:P76185" /db_xref="EcoGene:EG13944" /db_xref="GeneID:946499" /translation="MSIKTIKYFSTIIVAVVAVLAGWWLWNYYMQSPWTRDGKIRAEQ VSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKAN NEANRRRHLSQNFISAEELDTANLNVKAMQASVDAAQATLKQAQWQLAQTEIRAPVSG WVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKT LQGHVSSIGRAIYDQSVESDSSLIPDVKPNVPWVRLAQRVPVRFALDKVPGDVTLVSG TTCSIAVGQ" gene 1722121..1724133 /gene="ydhK" /locus_tag="b1645" /gene_synonym="ECK1641; JW1637" /db_xref="EcoGene:EG13945" /db_xref="GeneID:946528" CDS 1722121..1724133 /gene="ydhK" /locus_tag="b1645" /gene_synonym="ECK1641; JW1637" /codon_start=1 /transl_table=11 /product="putative efflux protein (PET) component of YdhJK efflux pump" /protein_id="NP_416162.1" /db_xref="GI:16129603" /db_xref="ASAP:ABE-0005503" /db_xref="UniProtKB/Swiss-Prot:P76186" /db_xref="EcoGene:EG13945" /db_xref="GeneID:946528" /translation="MNASSWSLRNLPWFRATLAQWRYALRNTIAMCLALTVAYYLNLD EPYWAMTSAAVVSFPTVGGVISKSLGRIAGSLLGAIAALLLAGHTLNEPWFFLLSMSA WLGFCTWACAHFTNNVAYAFQLAGYTAAIIAFPMVNITEASQLWDIAQARVCEVIVGI LCGGMMMMILPSSSDATALLTALKNMHARLLEHASLLWQPETTDAIRAAHEGVIGQIL TMNLLRIQAFWSHYRFRQQNARLNALLHQQLRMTSVISSLRRMLLNWPSPPGATREIL EQLLTALASSQTDVYTVARIIAPLRPTNVADYRHVAFWQRLRYFCRLYLQSSQELHRL QSGVDDHTRLPRTSGLARHTDNAEAMWSGLRTFCTLMMIGAWSIASQWDAGANALTLA AISCVLYSAVAAPFKSLSLLMRTLVLLSLFSFVVKFGLMVQISDLWQFLLFLFPLLAT MQLLKLQMPKFAALWGQLIVFMGSFIAVTNPPVYDFADFLNDNLAKIVGVALAWLAFA ILRPGSDARKSRRHIRALRRDFVDQLSRHPTLSESEFESLTYHHVSQLSNSQDALARR WLLRWGVVLLNCSHVVWQLRDWESRSDPLSRVRDNCISLLRGVMSERGVQQKSLAATL EELQRICDSLARHHQPAARELAAIVWRLYCSLSQLEQAPPQGTLAS" gene complement(1724134..1724655) /gene="sodC" /locus_tag="b1646" /gene_synonym="ECK1642; JW1638" /db_xref="EcoGene:EG13419" /db_xref="GeneID:945343" CDS complement(1724134..1724655) /gene="sodC" /locus_tag="b1646" /gene_synonym="ECK1642; JW1638" /EC_number="1.15.1.1" /function="enzyme; Detoxification" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006805 - xenobiotic metabolic process" /note="superoxide dismutase precursor (Cu-Zn)" /codon_start=1 /transl_table=11 /product="superoxide dismutase, Cu, Zn, periplasmic" /protein_id="NP_416163.1" /db_xref="GI:16129604" /db_xref="ASAP:ABE-0005505" /db_xref="UniProtKB/Swiss-Prot:P0AGD1" /db_xref="EcoGene:EG13419" /db_xref="GeneID:945343" /translation="MKRFSLAILALVVATGAQAASEKVEMNLVTSQGVGQSIGSVTIT ETDKGLEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAESAGGHLDPQNTGKHE GPEGAGHLGDLPALVVNNDGKATDAVIAPRLKSLDEIKDKALMVHVGGDNMSDQPKPL GGGGERYACGVIK" gene complement(1724736..1725632) /gene="ydhF" /locus_tag="b1647" /gene_synonym="ECK1643; JW1639" /db_xref="EcoGene:EG13420" /db_xref="GeneID:946960" CDS complement(1724736..1725632) /gene="ydhF" /locus_tag="b1647" /gene_synonym="ECK1643; JW1639" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="YP_025305.1" /db_xref="GI:49176131" /db_xref="ASAP:ABE-0005508" /db_xref="UniProtKB/Swiss-Prot:P76187" /db_xref="EcoGene:EG13420" /db_xref="GeneID:946960" /translation="MVQRITIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDL GVTTVDHADIYGGYQCEAAFGEALKLAPHLRERMEIVSKCGIATTAREENVIGHYITD RDHIIKSAEQSLINLATDHLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNF TPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRPMAWSCLGGGRLF NDDYFQPLRDELAVVAEELNAGSIEQVVYAWVLRLPSQPLPIIGSGKIERVRAAVEAE TLKMTRQQWFRIRKAALGYDVP" gene complement(1725681..1725920) /gene="ydhL" /locus_tag="b1648" /gene_synonym="ECK1644; JW5827" /db_xref="EcoGene:EG13946" /db_xref="GeneID:946168" CDS complement(1725681..1725920) /gene="ydhL" /locus_tag="b1648" /gene_synonym="ECK1644; JW5827" /codon_start=1 /transl_table=11 /product="DUF1289 family protein" /protein_id="NP_416165.2" /db_xref="GI:90111312" /db_xref="ASAP:ABE-0005510" /db_xref="UniProtKB/Swiss-Prot:P64474" /db_xref="EcoGene:EG13946" /db_xref="GeneID:946168" /translation="MAEQLEFFPVQSPCRGICQSDERGFCRGCFRSRDERFNWNKMSD GEKQEVLRLCRQRLMRKLRANKPASSDEPEQPSLF" gene 1726023..1726622 /gene="nemR" /locus_tag="b1649" /gene_synonym="ECK1645; JW5874; ydhM" /db_xref="EcoGene:EG13947" /db_xref="GeneID:946166" CDS 1726023..1726622 /gene="nemR" /locus_tag="b1649" /gene_synonym="ECK1645; JW5874; ydhM" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent" /codon_start=1 /transl_table=11 /product="transcriptional repressor for the nemRA-gloA operon, quinone-, glyoxal-, and HOCl-activated" /protein_id="NP_416166.3" /db_xref="GI:145698269" /db_xref="ASAP:ABE-0005514" /db_xref="UniProtKB/Swiss-Prot:P67430" /db_xref="EcoGene:EG13947" /db_xref="GeneID:946166" /translation="MNKHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGS FYHYFRSKEAFGVAMLERHYAAYHQRLTELLQSGEGNYRDRILAYYQQTLNQFCQHGT ISGCLTVKLSAEVCDLSEDMRSAMDKGARGVIALLSQALENGRENHCLTFCGEPLQQA QVLYALWLGANLQAKISRSFEPLENALAHVKNIIATPAV" gene 1726659..1727756 /gene="nemA" /locus_tag="b1650" /gene_synonym="ECK1646; JW1642; ydhN" /db_xref="EcoGene:EG13546" /db_xref="GeneID:946164" CDS 1726659..1727756 /gene="nemA" /locus_tag="b1650" /gene_synonym="ECK1646; JW1642; ydhN" /EC_number="1.-.-.-" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_process="GO:0006805 - xenobiotic metabolic process" /note="N-ethylmaleimide reductase" /codon_start=1 /transl_table=11 /product="chromate reductase, quinone reductase, FMN-linked; N-Ethylmaleimide reductase; old yellow enzyme" /protein_id="NP_416167.1" /db_xref="GI:16129608" /db_xref="ASAP:ABE-0005516" /db_xref="UniProtKB/Swiss-Prot:P77258" /db_xref="EcoGene:EG13546" /db_xref="GeneID:946164" /translation="MSSEKLYSPLKVGAITAANRIFMAPLTRLRSIEPGDIPTPLMAE YYRQRASAGLIISEATQISAQAKGYAGAPGIHSPEQIAAWKKITAGVHAENGHMAVQL WHTGRISHASLQPGGQAPVAPSALSAGTRTSLRDENGQAIRVETSMPRALELEEIPGI VNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNHRTDQYGGSVENRARLVLEV VDAGIEEWGADRIGIRVSPIGTFQNTDNGPNEEADALYLIEQLGKRGIAYLHMSEPDW AGGEPYTDAFREKVRARFHGPIIGAGAYTVEKAETLIGKGLIDAVAFGRDWIANPDLV ARLQRKAELNPQRAESFYGGGAEGYTDYPTL" gene 1727837..1728244 /gene="gloA" /locus_tag="b1651" /gene_synonym="ECK1647; JW1643" /db_xref="EcoGene:EG13421" /db_xref="GeneID:946161" CDS 1727837..1728244 /gene="gloA" /locus_tag="b1651" /gene_synonym="ECK1647; JW1643" /EC_number="4.4.1.5" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /experiment="N-terminus verified by Edman degradation: PMID 9628737" /GO_process="GO:0009438 - methylglyoxal metabolic process" /note="lactoylglutathione lyase" /codon_start=1 /transl_table=11 /product="glyoxalase I, Ni-dependent" /protein_id="NP_416168.1" /db_xref="GI:16129609" /db_xref="ASAP:ABE-0005520" /db_xref="UniProtKB/Swiss-Prot:P0AC81" /db_xref="EcoGene:EG13421" /db_xref="GeneID:946161" /translation="MRLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFV GYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGP VKGGTTVIAFVEDPDGYKIELIEEKDAGRGLGN" gene 1728347..1728994 /gene="rnt" /locus_tag="b1652" /gene_synonym="ECK1648; JW1644" /db_xref="EcoGene:EG11547" /db_xref="GeneID:946159" CDS 1728347..1728994 /gene="rnt" /locus_tag="b1652" /gene_synonym="ECK1648; JW1644" /EC_number="3.1.13.-" /function="enzyme; Degradation of RNA" /GO_process="GO:0006308 - DNA catabolic process; GO:0006401 - RNA catabolic process" /note="RNase T, degrades tRNA" /codon_start=1 /transl_table=11 /product="RNase T; exoribonuclease T; structured DNA 3' exonuclease; RNA processing; DNA repair" /protein_id="NP_416169.1" /db_xref="GI:16129610" /db_xref="ASAP:ABE-0005523" /db_xref="UniProtKB/Swiss-Prot:P30014" /db_xref="EcoGene:EG11547" /db_xref="GeneID:946159" /translation="MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITL KMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKV VRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG QTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLSAAEEV" gene 1729087..1733703 /gene="lhr" /locus_tag="b1653" /gene_synonym="ECK1649; JW1645; rhlF" /db_xref="EcoGene:EG11548" /db_xref="GeneID:946156" CDS 1729087..1733703 /gene="lhr" /locus_tag="b1653" /gene_synonym="ECK1649; JW1645; rhlF" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication" /note="member of ATP-dependent helicase superfamily II" /codon_start=1 /transl_table=11 /product="putative ATP-dependent helicase" /protein_id="NP_416170.1" /db_xref="GI:16129611" /db_xref="ASAP:ABE-0005525" /db_xref="UniProtKB/Swiss-Prot:P30015" /db_xref="EcoGene:EG11548" /db_xref="GeneID:946156" /translation="MADNPDPSSLLPDVFSPATRDWFLRAFKQPTAVQPQTWHVAARS EHALVIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQ RNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYL MLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVR SASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGS IWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFE STSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMG AVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDSAVIVECMFAGR LENLTPPHNPLDVLAQQTVAAAAMDALQVDEWYSRVRRAAPWKDLPRRVFDATLDMLS GRYPSGDFSAFRPKLVWNRETGILTARPGAQLLAVTSGGTIPDRGMYSVLLPEGEEKA GSRRVGELDEEMVYESRVNDIITLGATSWRIQQITRDQVIVTPAPGRSARLPFWRGEG NGRPAELGEMIGDFLHLLADGAFFSGTIPPWLAEENTIANIQGLIEEQRNATGIVPGS RHLVLERCRDEIGDWRIILHSPYGRRVHEPWAVAIAGRIHALWGADASVVASDDGIVA RIPDTDGKLPDAAIFLFEPEKLLQIVREAVGSSALFAARFRECAARALLMPGRTPGHR TPLWQQRLRASQLLEIAQGYPDFPVILETLRECLQDVYDLPALERLMRRLNGGEIQIS DVTTTTPSPFATSLLFGYVAEFMYQSDAPLAERRASVLSLDSELLRNLLGQVDPGELL DPQVIRQVEEELQRLAPGRRAKGEEGLFDLLRELGPMTVEDLAQRHTGSSEEVASYLE NLLAVKRIFPAMISGQERLACMDDAARLRDALGVRLPESLPEIYLHRVSYPLRDLFLR YLRAHALVTAEQLAHEFSLGIAIVEEQLQQLREQGLVMNLQQDIWVSDEVFRRLRLRS LQAAREATRPVAATTYARLLLERQGVLPATDGSPALFASTSPGVYEGVDGVMRVIEQL AGVGLPASLWESQILPARVRDYSSEMLDELLATGAVIWSGQKKLGEDDGLVALHLQEY AAESFTPAEADQANRSALQQAIVAVLADGGAWFAQQISQRIRDKIGESVDLSALQEAL WALVWQGVITSDIWAPLRALTRSSSNARTSTRRSHRARRGRPVYAQPVSPRVSYNTPN LAGRWSLLQVEPLNDTERMLALAENMLDRYGIISRQAVIAENIPGGFPSMQTLCRSME DSGRIMRGRFVEGLGGAQFAERLTIDRLRDLATQATQTRHYTPVALSANDPANVWGNL LPWPAHPATLVPTRRAGALVVVSGGKLLLYLAQGGKKMLVWQEKEELLAPEVFHALTT ALRREPRLRFTLTEVNDLPVRQTPMFTLLREAGFSSSPQGLDWG" repeat_region 1733714..1733737 /note="REP127 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1733754..1734101) /gene="grxD" /locus_tag="b1654" /gene_synonym="ECK1650; JW1646; ydhD" /db_xref="EcoGene:EG12181" /db_xref="GeneID:946169" CDS complement(1733754..1734101) /gene="grxD" /locus_tag="b1654" /gene_synonym="ECK1650; JW1646; ydhD" /codon_start=1 /transl_table=11 /product="glutaredoxin-4" /protein_id="NP_416171.1" /db_xref="GI:16129612" /db_xref="ASAP:ABE-0005527" /db_xref="UniProtKB/Swiss-Prot:P0AC69" /db_xref="EcoGene:EG12181" /db_xref="GeneID:946169" /translation="MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACG ERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE TAAKYKSEEPDAE" gene 1734435..1735250 /gene="mepH" /locus_tag="b1655" /gene_synonym="ECK1651; JW5270; ydhO" /db_xref="EcoGene:EG13949" /db_xref="GeneID:945210" CDS 1734435..1735250 /gene="mepH" /locus_tag="b1655" /gene_synonym="ECK1651; JW5270; ydhO" /function="enzyme; Murein sacculus, peptidoglycan" /note="putative lipoprotein" /codon_start=1 /transl_table=11 /product="murein DD-endopeptidase, space-maker hydrolase" /protein_id="NP_416172.1" /db_xref="GI:16129613" /db_xref="ASAP:ABE-0005533" /db_xref="UniProtKB/Swiss-Prot:P76190" /db_xref="EcoGene:EG13949" /db_xref="GeneID:945210" /translation="MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKA DKKKSTATTKKTQKTAKKAASKSTTKSKTASSVKKSSITASKNAKTRSKHAVNKTASA SFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGG SSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQG RGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR" gene 1735378..1735959 /gene="sodB" /locus_tag="b1656" /gene_synonym="ECK1652; JW1648" /db_xref="EcoGene:EG10954" /db_xref="GeneID:944953" CDS 1735378..1735959 /gene="sodB" /locus_tag="b1656" /gene_synonym="ECK1652; JW1648" /EC_number="1.15.1.1" /function="enzyme; Detoxification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006805 - xenobiotic metabolic process" /note="superoxide dismutase, iron" /codon_start=1 /transl_table=11 /product="superoxide dismutase, Fe" /protein_id="NP_416173.1" /db_xref="GI:16129614" /db_xref="ASAP:ABE-0005537" /db_xref="UniProtKB/Swiss-Prot:P0AGD3" /db_xref="EcoGene:EG10954" /db_xref="GeneID:944953" /translation="MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIK GTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFG SFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWE HAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA" repeat_region 1735983..1736056 /note="REP128 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(1736121..1737290) /gene="ydhP" /locus_tag="b1657" /gene_synonym="ECK1653; JW1649" /db_xref="EcoGene:EG13950" /db_xref="GeneID:947340" CDS complement(1736121..1737290) /gene="ydhP" /locus_tag="b1657" /gene_synonym="ECK1653; JW1649" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative MFS transporter, inner membrane protein" /protein_id="NP_416174.1" /db_xref="GI:16129615" /db_xref="ASAP:ABE-0005540" /db_xref="UniProtKB/Swiss-Prot:P77389" /db_xref="EcoGene:EG13950" /db_xref="GeneID:947340" /translation="MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGM LISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRIL TSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRM SFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMF TLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLL MVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAF NLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS" gene complement(1737456..1737545) /gene="ynhF" /locus_tag="b4602" /gene_synonym="ECK4411" /db_xref="EcoGene:EG14016" /db_xref="GeneID:5061505" CDS complement(1737456..1737545) /gene="ynhF" /locus_tag="b4602" /gene_synonym="ECK4411" /codon_start=1 /transl_table=11 /product="stress response membrane" /protein_id="YP_001165321.1" /db_xref="GI:145698270" /db_xref="UniProtKB/Swiss-Prot:A5A618" /db_xref="EcoGene:EG14016" /db_xref="GeneID:5061505" /translation="MSTDLKFSLVTTIIVLGLIVAVGLTAALH" gene 1737844..1738869 /gene="purR" /locus_tag="b1658" /gene_synonym="ECK1654; JW1650" /db_xref="EcoGene:EG10800" /db_xref="GeneID:945226" CDS 1737844..1738869 /gene="purR" /locus_tag="b1658" /gene_synonym="ECK1654; JW1650" /function="regulator; Purine ribonucleotide biosynthesis" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0009063 - cellular amino acid catabolic process; GO:0006545 - glycine biosynthetic process; GO:0000105 - histidine biosynthetic process; GO:0006807 - nitrogen compound metabolic process; GO:0015949 - nucleobase, nucleoside and nucleotide interconversion; GO:0006596 - polyamine biosynthetic process; GO:0006164 - purine nucleotide biosynthetic process; GO:0006221 - pyrimidine nucleotide biosynthetic process; GO:0006350 - transcription" /note="transcriptional repressor for pur regulon, glyA, glnB, prsA, speA" /codon_start=1 /transl_table=11 /product="transcriptional repressor, hypoxanthine-binding" /protein_id="NP_416175.1" /db_xref="GI:16129616" /db_xref="ASAP:ABE-0005545" /db_xref="UniProtKB/Swiss-Prot:P0ACP7" /db_xref="EcoGene:EG10800" /db_xref="GeneID:945226" /translation="MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELH YSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLE KQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVID NAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQ GDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDN VRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADG PFRDYRR" gene complement(1738866..1739798) /gene="ydhB" /locus_tag="b1659" /gene_synonym="ECK1655; JW1651" /db_xref="EcoGene:EG12140" /db_xref="GeneID:945208" CDS complement(1738866..1739798) /gene="ydhB" /locus_tag="b1659" /gene_synonym="ECK1655; JW1651" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="LysR family putative transcriptional regulator" /protein_id="NP_416176.1" /db_xref="GI:16129617" /db_xref="ASAP:ABE-0005547" /db_xref="UniProtKB/Swiss-Prot:P0ACR2" /db_xref="EcoGene:EG12140" /db_xref="GeneID:945208" /translation="MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWL AVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIV RPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAF RDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKR VVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQND MSPALTWLLEYLGDSETLNKEWLREPEETPATGD" gene 1739911..1741122 /gene="ydhC" /locus_tag="b1660" /gene_synonym="ECK1656; JW1652" /db_xref="EcoGene:EG12141" /db_xref="GeneID:946077" CDS 1739911..1741122 /gene="ydhC" /locus_tag="b1660" /gene_synonym="ECK1656; JW1652" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative arabinose efflux transporter" /protein_id="YP_025306.1" /db_xref="GI:49176132" /db_xref="ASAP:ABE-0005551" /db_xref="UniProtKB/Swiss-Prot:P37597" /db_xref="EcoGene:EG12141" /db_xref="GeneID:946077" /translation="MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVS ASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRF VQAVGVCAAAVIWQALVTDYYPSQKVNRIFAAIMPLVGLSPALAPLLGSWLLVHFSWQ AIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSAS FFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLV LFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAA LQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNH GNAEVAHSESH" gene 1741413..1742561 /gene="cfa" /locus_tag="b1661" /gene_synonym="cdfA; ECK1657; JW1653" /db_xref="EcoGene:EG11531" /db_xref="GeneID:944811" CDS 1741413..1742561 /gene="cfa" /locus_tag="b1661" /gene_synonym="cdfA; ECK1657; JW1653" /EC_number="2.1.1.79" /function="enzyme; Fatty acid and phosphatidic acid biosynthesis" /note="cyclopropane fatty acyl phospholipid synthase" /codon_start=1 /transl_table=11 /product="cyclopropane fatty acyl phospholipid synthase, SAM-dependent" /protein_id="NP_416178.1" /db_xref="GI:16129619" /db_xref="ASAP:ABE-0005555" /db_xref="UniProtKB/Swiss-Prot:P0A9H7" /db_xref="EcoGene:EG11531" /db_xref="GeneID:944811" /translation="MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNP DFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGAR LFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMIC EKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTIL LQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLN VDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPE IADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR" gene complement(1742601..1743242) /gene="ribC" /locus_tag="b1662" /gene_synonym="ECK1658; JW1654; ribE" /db_xref="EcoGene:EG11406" /db_xref="GeneID:945848" CDS complement(1742601..1743242) /gene="ribC" /locus_tag="b1662" /gene_synonym="ECK1658; JW1654; ribE" /EC_number="2.5.1.9" /function="enzyme; Biosynthesis of cofactors, carriers: Riboflavin" /note="riboflavin synthase, alpha chain" /codon_start=1 /transl_table=11 /product="riboflavin synthase, alpha subunit" /protein_id="NP_416179.1" /db_xref="GI:16129620" /db_xref="ASAP:ABE-0005557" /db_xref="UniProtKB/Swiss-Prot:P0AFU8" /db_xref="EcoGene:EG11406" /db_xref="GeneID:945848" /translation="MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAH NGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGH IMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVH LIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA" gene 1743457..1744830 /gene="mdtK" /locus_tag="b1663" /gene_synonym="ECK1659; JW1655; norE; norM; ydhE" /db_xref="EcoGene:EG12400" /db_xref="GeneID:945883" CDS 1743457..1744830 /gene="mdtK" /locus_tag="b1663" /gene_synonym="ECK1659; JW1655; norE; norM; ydhE" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042493 - response to drug" /note="multidrug resistance protein norM (Na(+)/drug antiporter) (Multidrug-efflux transporter)" /codon_start=1 /transl_table=11 /product="multidrug efflux system transporter" /protein_id="YP_025307.1" /db_xref="GI:49176133" /db_xref="ASAP:ABE-0005561" /db_xref="UniProtKB/Swiss-Prot:P37340" /db_xref="EcoGene:EG12400" /db_xref="GeneID:945883" /translation="MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDM AAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLI MLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPG MVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSM RDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQI ALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTV SLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITF TAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAI ILQRASR" gene complement(1744871..1746127) /gene="ydhQ" /locus_tag="b1664" /gene_synonym="ECK1660; JW1656" /db_xref="EcoGene:EG13951" /db_xref="GeneID:944851" CDS complement(1744871..1746127) /gene="ydhQ" /locus_tag="b1664" /gene_synonym="ECK1660; JW1656" /function="putative enzyme; Not classified" /note="possible enzyme" /codon_start=1 /transl_table=11 /product="autotransporter adhesin-related protein" /protein_id="NP_416181.1" /db_xref="GI:16129622" /db_xref="ASAP:ABE-0005563" /db_xref="UniProtKB/Swiss-Prot:P77552" /db_xref="EcoGene:EG13951" /db_xref="GeneID:944851" /translation="MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENT VVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRH PEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGE LLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGT DGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRA PVELTGSVALLDGASMIIGYGAELQQSTITVQQGGVLILDGSTVKGDSVTFIVGNINL NGGKLWLITDAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITD ASRQTLCNALKLQPDEDGIGATLQPA" gene 1746435..1746511 /gene="valV" /locus_tag="b1665" /gene_synonym="ECK1661; JWR0031" /db_xref="EcoGene:EG30111" /db_xref="GeneID:946170" tRNA 1746435..1746511 /gene="valV" /locus_tag="b1665" /gene_synonym="ECK1661; JWR0031" /product="tRNA-Val" /note="anticodon: GAC" /db_xref="ASAP:ABE-0005567" /db_xref="EcoGene:EG30111" /db_xref="GeneID:946170" gene 1746516..1746592 /gene="valW" /locus_tag="b1666" /gene_synonym="ECK1662; JWR0032" /db_xref="EcoGene:EG30112" /db_xref="GeneID:949069" tRNA 1746516..1746592 /gene="valW" /locus_tag="b1666" /gene_synonym="ECK1662; JWR0032" /product="tRNA-Val" /note="anticodon: GAC" /db_xref="ASAP:ABE-0005569" /db_xref="EcoGene:EG30112" /db_xref="GeneID:949069" gene 1746700..1747005 /gene="ydhR" /locus_tag="b1667" /gene_synonym="ECK1663; JW1657" /db_xref="EcoGene:EG13952" /db_xref="GeneID:946177" CDS 1746700..1747005 /gene="ydhR" /locus_tag="b1667" /gene_synonym="ECK1663; JW1657" /codon_start=1 /transl_table=11 /product="putative monooxygenase" /protein_id="NP_416182.1" /db_xref="GI:16129623" /db_xref="ASAP:ABE-0005572" /db_xref="UniProtKB/Swiss-Prot:P0ACX3" /db_xref="EcoGene:EG13952" /db_xref="GeneID:946177" /translation="MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTES EKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA" gene 1747131..1748735 /gene="ydhS" /locus_tag="b1668" /gene_synonym="ECK1664; JW1658" /db_xref="EcoGene:EG13953" /db_xref="GeneID:945786" CDS 1747131..1748735 /gene="ydhS" /locus_tag="b1668" /gene_synonym="ECK1664; JW1658" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_416183.1" /db_xref="GI:16129624" /db_xref="ASAP:ABE-0005575" /db_xref="UniProtKB/Swiss-Prot:P77148" /db_xref="EcoGene:EG13953" /db_xref="GeneID:945786" /translation="MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPY SDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHLQRYGVKKETLHDRQFLPRILL GEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVI ATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFI EDDKQHVVFHRDNASEKLNITLLSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKG EEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNL QEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPS ESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKV KDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTA CAEIGEAMARAVVKPASRARRRLSFD" gene complement(1748747..1749559) /gene="ydhT" /locus_tag="b1669" /gene_synonym="ECK1665; JW1659" /db_xref="EcoGene:EG13954" /db_xref="GeneID:945960" CDS complement(1748747..1749559) /gene="ydhT" /locus_tag="b1669" /gene_synonym="ECK1665; JW1659" /codon_start=1 /transl_table=11 /product="FNR, Nar, NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex" /protein_id="NP_416184.1" /db_xref="GI:16129625" /db_xref="ASAP:ABE-0005577" /db_xref="UniProtKB/Swiss-Prot:P77147" /db_xref="EcoGene:EG13954" /db_xref="GeneID:945960" /translation="MIITQADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYT DWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERPFCSQFARSDDHARIGCCED NARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRI ANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTG VVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC" gene complement(1749563..1750348) /gene="ydhU" /locus_tag="b1670" /gene_synonym="ECK1666; JW1660" /db_xref="EcoGene:EG13955" /db_xref="GeneID:945608" CDS complement(1749563..1750348) /gene="ydhU" /locus_tag="b1670" /gene_synonym="ECK1666; JW1660" /function="putative enzyme; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative cytochrome b subunit of YdhYVWXUT oxidoreductase complex" /protein_id="NP_416185.1" /db_xref="GI:16129626" /db_xref="ASAP:ABE-0005579" /db_xref="UniProtKB/Swiss-Prot:P77409" /db_xref="EcoGene:EG13955" /db_xref="GeneID:945608" /translation="MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVL GLHALLRARGVKKSATDHGEKIYLYSKAVRLWHWSNALLFVLLLASGLINHFAMVGAT AVKSLVAVHEVCGFLLLACWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGI MQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYW LLQTHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH" gene complement(1750345..1751013) /gene="ydhX" /locus_tag="b1671" /gene_synonym="ECK1667; JW5271" /db_xref="EcoGene:EG13958" /db_xref="GeneID:947308" CDS complement(1750345..1751013) /gene="ydhX" /locus_tag="b1671" /gene_synonym="ECK1667; JW5271" /function="putative enzyme; Not classified" /note="putative oxidoreductase, Fe-S subunit" /codon_start=1 /transl_table=11 /product="putative 4Fe-4S ferridoxin-type protein; FNR, Nar, NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex" /protein_id="NP_416186.4" /db_xref="GI:226524717" /db_xref="ASAP:ABE-0005583" /db_xref="UniProtKB/Swiss-Prot:P77375" /db_xref="EcoGene:EG13958" /db_xref="GeneID:947308" /translation="MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDES RCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCID VCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLA KGFPPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIK KENV" gene complement(1751077..1751724) /gene="ydhW" /locus_tag="b1672" /gene_synonym="ECK1668; JW1662" /db_xref="EcoGene:EG13957" /db_xref="GeneID:947180" CDS complement(1751077..1751724) /gene="ydhW" /locus_tag="b1672" /gene_synonym="ECK1668; JW1662" /codon_start=1 /transl_table=11 /product="FNR, Nar, NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex" /protein_id="NP_416187.1" /db_xref="GI:16129628" /db_xref="ASAP:ABE-0005585" /db_xref="UniProtKB/Swiss-Prot:P77564" /db_xref="EcoGene:EG13957" /db_xref="GeneID:947180" /translation="MGKMNHQDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEI LAEFIRQHSAAGQLVARAVFLSPPYLVAEEELSVLLESIKQNGDYADIACLTGSKDDY YYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQ IEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP" gene complement(1751728..1753830) /gene="ydhV" /locus_tag="b1673" /gene_synonym="ECK1669; JW5272" /db_xref="EcoGene:EG13956" /db_xref="GeneID:948756" CDS complement(1751728..1753830) /gene="ydhV" /locus_tag="b1673" /gene_synonym="ECK1669; JW5272" /codon_start=1 /transl_table=11 /product="putative oxidoreductase subunit" /protein_id="NP_416188.1" /db_xref="GI:16129629" /db_xref="ASAP:ABE-0005587" /db_xref="UniProtKB/Swiss-Prot:P76192" /db_xref="EcoGene:EG13956" /db_xref="GeneID:948756" /translation="MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDE VPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQ MKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCV AAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKR LNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPP GNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGN TCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYS KGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWN LGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPL KLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTV SPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRN EHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQR LGLEDIAADLAAHNLLPA" gene complement(1753851..1754477) /gene="ydhY" /locus_tag="b1674" /gene_synonym="ECK1670; JW1664" /db_xref="EcoGene:EG13959" /db_xref="GeneID:948749" CDS complement(1753851..1754477) /gene="ydhY" /locus_tag="b1674" /gene_synonym="ECK1670; JW1664" /function="putative enzyme; Not classified" /note="putative oxidoreductase, Fe-S subunit" /codon_start=1 /transl_table=11 /product="putative 4Fe-4S ferridoxin-type protein; FNR, Nar, NarP-regulated protein; putative subunit of YdhYVWXUT oxidoreductase complex" /protein_id="NP_416189.1" /db_xref="GI:16129630" /db_xref="ASAP:ABE-0005589" /db_xref="UniProtKB/Swiss-Prot:P0AAL6" /db_xref="EcoGene:EG13959" /db_xref="GeneID:948749" /translation="MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQE DIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFG DNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCS ACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV" gene complement(1754932..1755141) /gene="ydhZ" /locus_tag="b1675" /gene_synonym="ECK1671; JW1665" /db_xref="EcoGene:EG13960" /db_xref="GeneID:946180" CDS complement(1754932..1755141) /gene="ydhZ" /locus_tag="b1675" /gene_synonym="ECK1671; JW1665" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416190.1" /db_xref="GI:16129631" /db_xref="ASAP:ABE-0005591" /db_xref="UniProtKB/Swiss-Prot:P0ACX5" /db_xref="EcoGene:EG13960" /db_xref="GeneID:946180" /translation="MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTA LANKRIQRSELEKQAMETVINALVK" gene 1755698..1757110 /gene="pykF" /locus_tag="b1676" /gene_synonym="ECK1672; JW1666" /db_xref="EcoGene:EG10804" /db_xref="GeneID:946179" CDS 1755698..1757110 /gene="pykF" /locus_tag="b1676" /gene_synonym="ECK1672; JW1666" /EC_number="2.7.1.40" /function="enzyme; Energy metabolism, carbon: Glycolysis" /experiment="N-terminus verified by Edman degradation: PMID 1859631,9298646" /GO_process="GO:0009061 - anaerobic respiration; GO:0006113 - fermentation; GO:0006096 - glycolysis" /note="pyruvate kinase I (formerly F), fructose stimulated" /codon_start=1 /transl_table=11 /product="pyruvate kinase I" /protein_id="NP_416191.1" /db_xref="GI:16129632" /db_xref="ASAP:ABE-0005600" /db_xref="UniProtKB/Swiss-Prot:P0AD61" /db_xref="EcoGene:EG10804" /db_xref="GeneID:946179" /translation="MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHG QRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGN SEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNL PGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHII SKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVIT ATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICER TDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFP DATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVV MVSGALVPSGTTNTASVHVL" gene 1757421..1757657 /gene="lpp" /locus_tag="b1677" /gene_synonym="ECK1673; JW1667; mlpA; mulI" /db_xref="EcoGene:EG10544" /db_xref="GeneID:946175" CDS 1757421..1757657 /gene="lpp" /locus_tag="b1677" /gene_synonym="ECK1673; JW1667; mlpA; mulI" /function="membrane; Murein sacculus, peptidoglycan" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /codon_start=1 /transl_table=11 /product="murein lipoprotein" /protein_id="NP_416192.1" /db_xref="GI:16129633" /db_xref="ASAP:ABE-0005603" /db_xref="UniProtKB/Swiss-Prot:P69776" /db_xref="EcoGene:EG10544" /db_xref="GeneID:946175" /translation="MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQL SNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK" gene complement(1757721..1758725) /gene="ldtE" /locus_tag="b1678" /gene_synonym="ECK1674; JW1668; ynhG" /db_xref="EcoGene:EG14015" /db_xref="GeneID:946174" CDS complement(1757721..1758725) /gene="ldtE" /locus_tag="b1678" /gene_synonym="ECK1674; JW1668; ynhG" /function="enzyme; Murein sacculus, peptidoglycan" /codon_start=1 /transl_table=11 /product="murein L,D-transpeptidase" /protein_id="NP_416193.1" /db_xref="GI:16129634" /db_xref="ASAP:ABE-0005605" /db_xref="UniProtKB/Swiss-Prot:P76193" /db_xref="EcoGene:EG14015" /db_xref="GeneID:946174" /translation="MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTV QEGDKNLQAIARRFDTAAMLILEANNTIAPVPKPGTTITIPSQLLLPDAPRQGIIVNL AELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTWTPTAGIRQRSLER GIKLPPVVPAGPNNPLGRYALRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIK ALFSSVRTGTPVKVINEPVKYSVEPNGMRYVEVHRPLSAEEQQNVQTMPYTLPAGFTQ FKDNKAVDQKLVDKALYRRAGYPVSVSSGATPAASNAPSVESAQNGEPEQGNMLRVTQ " gene complement(1758874..1759290) /gene="sufE" /locus_tag="b1679" /gene_synonym="ECK1675; JW1669; ynhA" /db_xref="EcoGene:EG13961" /db_xref="GeneID:946173" CDS complement(1758874..1759290) /gene="sufE" /locus_tag="b1679" /gene_synonym="ECK1675; JW1669; ynhA" /codon_start=1 /transl_table=11 /product="sulfur acceptor protein" /protein_id="NP_416194.1" /db_xref="GI:16129635" /db_xref="ASAP:ABE-0005608" /db_xref="UniProtKB/Swiss-Prot:P76194" /db_xref="EcoGene:EG13961" /db_xref="GeneID:946173" /translation="MALLPDKEKLLRNFLRCANWEEKYLYIIELGQRLPELRDEDRSP QNSIQGCQSQVWIVMRQNAQGIIELQGDSDAAIVKGLIAVVFILYDQMTPQDIVNFDV RPWFEKMALTQHLTPSRSQGLEAMIRAIRAKAAALS" gene complement(1759303..1760523) /gene="sufS" /locus_tag="b1680" /gene_synonym="csdB; ECK1676; JW1670; ynhB" /db_xref="EcoGene:EG13962" /db_xref="GeneID:946185" CDS complement(1759303..1760523) /gene="sufS" /locus_tag="b1680" /gene_synonym="csdB; ECK1676; JW1670; ynhB" /EC_number="4.4.1.16" /experiment="N-terminus verified by Edman degradation: PMID 10329673" /codon_start=1 /transl_table=11 /product="cysteine desulfurase, stimulated by SufE; selenocysteine lyase, PLP-dependent" /protein_id="NP_416195.1" /db_xref="GI:16129636" /db_xref="ASAP:ABE-0005610" /db_xref="UniProtKB/Swiss-Prot:P77444" /db_xref="EcoGene:EG13962" /db_xref="GeneID:946185" /translation="MIFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEA EFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVA NSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTL FDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCD FYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEA GTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGV IAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVD RLVTGLQRIHRLLG" gene complement(1760520..1761791) /gene="sufD" /locus_tag="b1681" /gene_synonym="ECK1677; JW1671; ynhC" /db_xref="EcoGene:EG13963" /db_xref="GeneID:944878" CDS complement(1760520..1761791) /gene="sufD" /locus_tag="b1681" /gene_synonym="ECK1677; JW1671; ynhC" /codon_start=1 /transl_table=11 /product="component of SufBCD Fe-S cluster assembly scaffold" /protein_id="NP_416196.1" /db_xref="GI:16129637" /db_xref="ASAP:ABE-0005617" /db_xref="UniProtKB/Swiss-Prot:P77689" /db_xref="EcoGene:EG13963" /db_xref="GeneID:944878" /translation="MAGLPNSSNALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTR KHENWKYTPLEGLINSQFVSIAGEISPQQRDALALTLDSVRLVFVDGRYVPALSDATE GSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQG VAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKL AFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMP VKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNN LLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQIFYLRSRGINQQDAQQMIIYA FAAELTEALRDEGLKQQVLARIGQRLPGGAR" gene complement(1761766..1762512) /gene="sufC" /locus_tag="b1682" /gene_synonym="ECK1678; JW1672; ynhD" /db_xref="EcoGene:EG13964" /db_xref="GeneID:946128" CDS complement(1761766..1762512) /gene="sufC" /locus_tag="b1682" /gene_synonym="ECK1678; JW1672; ynhD" /GO_component="GO:0005737 - cytoplasm" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="SufBCD Fe-S cluster assembly scaffold protein, ATP-binding protein" /protein_id="NP_416197.1" /db_xref="GI:16129638" /db_xref="ASAP:ABE-0005619" /db_xref="UniProtKB/Swiss-Prot:P77499" /db_xref="EcoGene:EG13964" /db_xref="GeneID:946128" /translation="MLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLS ATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA LNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA VLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHV LYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ" gene complement(1762522..1764009) /gene="sufB" /locus_tag="b1683" /gene_synonym="ECK1679; JW5273; ynhE" /db_xref="EcoGene:EG13965" /db_xref="GeneID:945753" CDS complement(1762522..1764009) /gene="sufB" /locus_tag="b1683" /gene_synonym="ECK1679; JW5273; ynhE" /GO_process="GO:0006457 - protein folding" /codon_start=1 /transl_table=11 /product="component of SufBCD Fe-S cluster assembly scaffold" /protein_id="NP_416198.2" /db_xref="GI:90111315" /db_xref="ASAP:ABE-0005621" /db_xref="UniProtKB/Swiss-Prot:P77522" /db_xref="EcoGene:EG13965" /db_xref="GeneID:945753" /translation="MSRNTEATDDVKTWTGGPLNYKEGFFTQLATDELAKGINEEVVR AISAKRNEPEWMLEFRLNAYRAWLEMEEPHWLKAHYDKLNYQDYSYYSAPSCGNCDDT CASEPGAVQQTGANAFLSKEVEAAFEQLGVPVREGKEVAVDAIFDSVSVATTYREKLA EQGIIFCSFGEAIHDHPELVRKYLGTVVPGNDNFFAALNAAVASDGTFIYVPKGVRCP MELSTYFRINAEKTGQFERTILVADEDSYVSYIEGCSAPVRDSYQLHAAVVEVIIHKN AEVKYSTVQNWFPGDNNTGGILNFVTKRALCEGENSKMSWTQSETGSAITWKYPSCIL RGDNSIGEFYSVALTSGHQQADTGTKMIHIGKNTKSTIISKGISAGHSQNSYRGLVKI MPTATNARNFTQCDSMLIGANCGAHTFPYVECRNNSAQLEHEATTSRIGEDQLFYCLQ RGISEEDAISMIVNGFCKDVFSELPLEFAVEAQKLLAISLEHSVG" gene complement(1764018..1764386) /gene="sufA" /locus_tag="b1684" /gene_synonym="ECK1680; JW1674; ydiC" /db_xref="EcoGene:EG11378" /db_xref="GeneID:949014" CDS complement(1764018..1764386) /gene="sufA" /locus_tag="b1684" /gene_synonym="ECK1680; JW1674; ydiC" /codon_start=1 /transl_table=11 /product="Fe-S cluster assembly protein" /protein_id="NP_416199.1" /db_xref="GI:16129640" /db_xref="ASAP:ABE-0005624" /db_xref="UniProtKB/Swiss-Prot:P77667" /db_xref="EcoGene:EG11378" /db_xref="GeneID:949014" /translation="MDMHSGTFNPQDFAWQGLTLTPAAAIHIRELVAKQPGMVGVRLG VKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREGLNQI FKFHNPKAQNECGCGESFGV" gene complement(1764713..1764780) /gene="rydB" /locus_tag="b4430" /gene_synonym="ECK1681; IS082; JWR0236; tpe7" /db_xref="EcoGene:EG31145" /db_xref="GeneID:2847670" ncRNA complement(1764713..1764780) /ncRNA_class="other" /gene="rydB" /locus_tag="b4430" /gene_synonym="ECK1681; IS082; JWR0236; tpe7" /product="novel sRNA, function unknown" /note="identified in a large scale screen" /db_xref="ASAP:ABE-0047250" /db_xref="EcoGene:EG31145" /db_xref="GeneID:2847670" gene complement(1764934..1765122) /gene="ydiH" /locus_tag="b1685" /gene_synonym="ECK1682; JW1675" /db_xref="EcoGene:EG13967" /db_xref="GeneID:946194" CDS complement(1764934..1765122) /gene="ydiH" /locus_tag="b1685" /gene_synonym="ECK1682; JW1675" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416200.2" /db_xref="GI:226524718" /db_xref="ASAP:ABE-0005626" /db_xref="UniProtKB/Swiss-Prot:P64476" /db_xref="EcoGene:EG13967" /db_xref="GeneID:946194" /translation="MSTQLDPTQLAIEFLRRDQSNLSPAQYLKRLKQLELEFADLLTL SSAELKEEIYFAWRLGVH" gene complement(1765222..1765632) /gene="menI" /locus_tag="b1686" /gene_synonym="ECK1683; JW1676; ydiI" /db_xref="EcoGene:EG13968" /db_xref="GeneID:946190" CDS complement(1765222..1765632) /gene="menI" /locus_tag="b1686" /gene_synonym="ECK1683; JW1676; ydiI" /EC_number="3.1.2.28" /function="Enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone" /codon_start=1 /transl_table=11 /product="1,4-dihydroxy-2-naphthoyl-CoA hydrolase" /protein_id="NP_416201.1" /db_xref="GI:16129642" /db_xref="ASAP:ABE-0005628" /db_xref="UniProtKB/Swiss-Prot:P77781" /db_xref="EcoGene:EG13968" /db_xref="GeneID:946190" /translation="MIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDS RTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGVC KPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAIL" gene complement(1765629..1768685) /gene="ydiJ" /locus_tag="b1687" /gene_synonym="ECK1684; JW1677" /db_xref="EcoGene:EG13969" /db_xref="GeneID:946189" CDS complement(1765629..1768685) /gene="ydiJ" /locus_tag="b1687" /gene_synonym="ECK1684; JW1677" /function="putative enzyme; Not classified" /note="putative oxidase" /codon_start=1 /transl_table=11 /product="putative FAD-linked oxidoreductase" /protein_id="NP_416202.1" /db_xref="GI:16129643" /db_xref="ASAP:ABE-0005632" /db_xref="UniProtKB/Swiss-Prot:P77748" /db_xref="EcoGene:EG13969" /db_xref="GeneID:946189" /translation="MIPQISQAPGVVQLVLNFLQELEQQGFTGDTATSYADRLTMSTD NSIYQLLPDAVVFPRSTADVALIARLAAQERYSSLIFTPRGGGTGTNGQALNQGIIVD MSRHMNRIIEINPEEGWVRVEAGVIKDQLNQYLKPFGYFFAPELSTSNRATLGGMINT DASGQGSLVYGKTSDHVLGVRAVLLGGDILDTQPLPVELAETLGKSNTTIGRIYNTVY QRCRQQRQLIIDNFPKLNRFLTGYDLRHVFNDEMTEFDLTRILTGSEGTLAFITEARL DITRLPKVRRLVNVKYDSFDSALRNAPFMVEARALSVETVDSKVLNLAREDIVWHSVS ELITDVPDQEMLGLNIVEFAGDDEALIDERVNALCARLDELIASHQAGVIGWQVCREL AGVERIYAMRKKAVGLLGNAKGAAKPIPFAEDTCVPPEHLADYIAEFRALLDSHGLSY GMFGHVDAGVLHVRPALDMCDPQQEILMKQISDDVVALTAKYGGLLWGEHGKGFRAEY SPAFFGEELFAELRKVKAAFDPHNRLNPGKICPPEGLDAPMMKVDAVKRGTFDRQIPI AVRQQWRGAMECNGNGLCFNFDARSPMCPSMKITQNRIHSPKGRATLVREWLRLLADR GVDPLKLEQELPESGVSLRTLIARTRNSWHANKGEYDFSHEVKEAMSGCLACKACSTQ CPIKIDVPEFRSRFLQLYHTRYLRPLRDHLVATVESYAPLMARAPKTFNFFINQPLVR KLSEKHIGMVDLPLLSVPSLQQQMVGHRSANMTLEQLESLNAEQKARTVLVVQDPFTS YYDAQVVADFVRLVEKLGFQPVLLPFSPNGKAQHIKGFLNRFAKTAKKTADFLNRMAK LGMPMVGVDPALVLCYRDEYKLALGEERGEFNVLLANEWLASALESQPVATVSGESWY FFGHCTEVTALPGAPAQWAAIFARFGAKLENVSVGCCGMAGTYGHEAKNHENSLGIYE LSWHQAMQRLPRNRCLATGYSCRSQVKRVEGTGVRHPVQALLEIIK" gene 1769074..1770186 /gene="ydiK" /locus_tag="b1688" /gene_synonym="ECK1685; JW1678" /db_xref="EcoGene:EG13970" /db_xref="GeneID:946183" CDS 1769074..1770186 /gene="ydiK" /locus_tag="b1688" /gene_synonym="ECK1685; JW1678" /codon_start=1 /transl_table=11 /product="UPF0118 family inner membrane protein" /protein_id="NP_416203.1" /db_xref="GI:16129644" /db_xref="ASAP:ABE-0005637" /db_xref="UniProtKB/Swiss-Prot:P0AFS7" /db_xref="EcoGene:EG13970" /db_xref="GeneID:946183" /translation="MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTV VIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISS GDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHI GRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGV VVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTT WGTVLLVWSGVVGTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLL AVSWRLFAAWVEEVPPPTDQPEEILEELGEIEKPNK" gene 1770372..1770477 /gene="rprA" /locus_tag="b4431" /gene_synonym="ECK1686; IS083; JWR0203; psrA5" /db_xref="EcoGene:EG31130" /db_xref="GeneID:2847671" ncRNA 1770372..1770477 /ncRNA_class="antisense_RNA" /gene="rprA" /locus_tag="b4431" /gene_synonym="ECK1686; IS083; JWR0203; psrA5" /product="sRNA antisense activator for RpoS translation, Hfq-dependent" /note="RprA RNA; positive regulatory RNA for rpoS translation" /db_xref="ASAP:ABE-0047251" /db_xref="EcoGene:EG31130" /db_xref="GeneID:2847671" gene 1770615..1770971 /gene="ydiL" /locus_tag="b1689" /gene_synonym="ECK1687; JW1679" /db_xref="EcoGene:EG13971" /db_xref="GeneID:946181" CDS 1770615..1770971 /gene="ydiL" /locus_tag="b1689" /gene_synonym="ECK1687; JW1679" /codon_start=1 /transl_table=11 /product="putative HTH domain DNA-binding protein" /protein_id="NP_416204.2" /db_xref="GI:90111316" /db_xref="ASAP:ABE-0005641" /db_xref="UniProtKB/Swiss-Prot:P76196" /db_xref="EcoGene:EG13971" /db_xref="GeneID:946181" /translation="MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIP DRVVEQLLAMRQQRKKHLHAIIEKINNRIGNNTMRFFPDLTAFQRVYPDGNFIDWKIY QSVAAELYAHDLERLC" gene 1771071..1772285 /gene="ydiM" /locus_tag="b1690" /gene_synonym="ECK1688; JW1680" /db_xref="EcoGene:EG13972" /db_xref="GeneID:946196" CDS 1771071..1772285 /gene="ydiM" /locus_tag="b1690" /gene_synonym="ECK1688; JW1680" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport system permease protein" /codon_start=1 /transl_table=11 /product="putative MFS transporter, membrane protein" /protein_id="NP_416205.1" /db_xref="GI:16129646" /db_xref="ASAP:ABE-0005645" /db_xref="UniProtKB/Swiss-Prot:P76197" /db_xref="EcoGene:EG13972" /db_xref="GeneID:946196" /translation="MKNPYFPTALGLYFNYLVHGMGVLLMSLNMASLETLWQTNAAGV SIVISSLGIGRLSVLLFAGLLSDRFGRRPFIMLGMCCYMAFFFGILQTNNIIIAYVFG FLAGMANSFLDAGTYPSLMEAFPRSPGTANILIKAFVSSGQFLLPLIISLLVWAELWF GWSFMIAAGIMFINALFLYRCTFPPHPGRRLPVIKKTTSSTEHRCSIIDLASYTLYGY ISMATFYLVSQWLAQYGQFVAGMSYTMSIKLLSIYTVGSLLCVFITAPLIRNTVRPTT LLMLYTFISFIALFTVCLHPTFYVVIIFAFVIGFTSAGGVVQIGLTLMAERFPYAKGK ATGIYYSAGSIATFTIPLITAHLSQRSIADIMWFDTAIAAIGFLLALFIGLRSRKKTR HHSLKENVAPGG" gene 1772512..1773777 /gene="ydiN" /locus_tag="b1691" /gene_synonym="ECK1689; JW5274" /db_xref="EcoGene:EG13973" /db_xref="GeneID:946198" CDS 1772512..1773777 /gene="ydiN" /locus_tag="b1691" /gene_synonym="ECK1689; JW5274" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative amino acid/amine transport protein" /codon_start=1 /transl_table=11 /product="putative MFS transporter, membrane protein" /protein_id="NP_416206.6" /db_xref="GI:226524719" /db_xref="ASAP:ABE-0005648" /db_xref="UniProtKB/Swiss-Prot:P76198" /db_xref="EcoGene:EG13973" /db_xref="GeneID:946198" /translation="MSQNKAFSTPFILAVLCIYFSYFLHGISVITLAQNMSSLAEKFS TDNAGIAYLISGIGLGRLISILFFGVISDKFGRRAVILMAVIMYLLFFFGIPACPNLT LAYGLAVCVGIANSALDTGGYPALMECFPKASGSAVILVKAMVSFGQMFYPMLVSYML LNNIWYGYGLIIPGILFVLITLMLLKSKFPSQLVDASVTNELPQMNSKPLVWLEGVSS VLFGVAAFSTFYVIVVWMPKYAMAFAGMSEAEALKTISYYSMGSLVCVFIFAALLKKM VRPIWANVFNSALATITAAIIYLYPSPLVCNAGAFVIGFSAAGGILQLGVSVMSEFFP KSKAKVTSIYMMMGGLANFVIPLITGYLSNIGLQYIIVLDFTFALLALITAIIVFIRY YRVFIIPENDVRFGERKFCTRLNTIKHRG" gene 1773789..1774655 /gene="ydiB" /locus_tag="b1692" /gene_synonym="ECK1690; JW1682" /db_xref="EcoGene:EG11234" /db_xref="GeneID:946200" CDS 1773789..1774655 /gene="ydiB" /locus_tag="b1692" /gene_synonym="ECK1690; JW1682" /EC_number="1.1.1.25" /function="putative enzyme; Not classified" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="quinate/shikimate 5-dehydrogenase, NAD(P)-binding" /protein_id="NP_416207.1" /db_xref="GI:16129648" /db_xref="ASAP:ABE-0005651" /db_xref="UniProtKB/Swiss-Prot:P0A6D5" /db_xref="EcoGene:EG11234" /db_xref="GeneID:946200" /translation="MDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEV DNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVNDDGYLR GYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEF FDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVN DISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFP LEYVKQVMGFGA" gene 1774686..1775444 /gene="aroD" /locus_tag="b1693" /gene_synonym="ECK1691; JW1683" /db_xref="EcoGene:EG10076" /db_xref="GeneID:946210" CDS 1774686..1775444 /gene="aroD" /locus_tag="b1693" /gene_synonym="ECK1691; JW1683" /EC_number="4.2.1.10" /function="enzyme; Amino acid biosynthesis: Chorismate" /experiment="N-terminus verified by Edman degradation: PMID 3541912" /GO_process="GO:0009423 - chorismate biosynthetic process" /codon_start=1 /transl_table=11 /product="3-dehydroquinate dehydratase" /protein_id="NP_416208.1" /db_xref="GI:16129649" /db_xref="ASAP:ABE-0005653" /db_xref="UniProtKB/Swiss-Prot:P05194" /db_xref="EcoGene:EG10076" /db_xref="GeneID:946210" /translation="MKTVTVKDLVIGTGAPKIIVSLMAKDIASVKSEALAYREADFDI LEWRVDHYADLSNVESVMAAAKILRETMPEKPLLFTFRSAKEGGEQAISTEAYIALNR AAIDSGLVDMIDLELFTGDDQVKETVAYAHAHDVKVVMSNHDFHKTPEAEEIIARLRK MQSFDADIPKIALMPQSTSDVLTLLAATLEMQEQYADRPIITMSMAKTGVISRLAGEV FGSAATFGAVKKASAPGQISVNDLRTVLTILHQA" gene 1775587..1777182 /gene="ydiF" /locus_tag="b1694" /gene_synonym="ECK1692; JW1684" /db_xref="EcoGene:EG12432" /db_xref="GeneID:946211" CDS 1775587..1777182 /gene="ydiF" /locus_tag="b1694" /gene_synonym="ECK1692; JW1684" /function="putative enzyme; Not classified" /GO_process="GO:0019395 - fatty acid oxidation" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="putative acetyl-CoA:acetoacetyl-CoA transferase: alpha subunit/beta subunit" /protein_id="NP_416209.1" /db_xref="GI:16129650" /db_xref="ASAP:ABE-0005656" /db_xref="UniProtKB/Swiss-Prot:P37766" /db_xref="EcoGene:EG12432" /db_xref="GeneID:946211" /translation="MKPVKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEAT TLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRI SELAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKE DLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNN GGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPDQTQLYGGAPVNRFISGDFTLD DSTKLSLPLNQRKLVARRALFEMRKGAVGNVGVGIADGIGLVAREEGCADDFILTVET GPIGGITSQGIAFGANVNTRAILDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKF NGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEITDGKLNIVQEGRVKKFIRELPEI TFSGKIALERGLDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILDKMDFTPVISPE LKLMDERLFIDAAMGFVLPEAAH" gene 1777196..1778347 /gene="ydiO" /locus_tag="b1695" /gene_synonym="ECK1693; JW5275" /db_xref="EcoGene:EG13974" /db_xref="GeneID:945626" CDS 1777196..1778347 /gene="ydiO" /locus_tag="b1695" /gene_synonym="ECK1693; JW5275" /function="putative enzyme; Not classified" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="putative acyl-CoA dehydrogenase" /protein_id="NP_416210.4" /db_xref="GI:90111318" /db_xref="ASAP:ABE-0005658" /db_xref="UniProtKB/Swiss-Prot:P0A9U8" /db_xref="EcoGene:EG13974" /db_xref="GeneID:945626" /translation="MDFSLTEEQELLLASIRELITTNFPEEYFRTCDQNGTYPREFMR ALADNGISMLGVPEEFGGIPADYVTQMLALMEVSKCGAPAFLITNGQCIHSMRRFGSA EQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYINGQKTFITGAK EYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKINPLHKIGWHMLSTCEVYLDNVEV EESDMVGEEGMGFLNVMYNFEMERLINAARSTGFAECAFEDAARYANQRIAFGKPIGH NQMIQEKLALMAIKIDNMRNMVLKVAWQADQHQSLRTSAALAKLYCARTAMEVIDDAI QIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILKDYQNK" gene complement(1778390..1779301) /gene="ydiP" /locus_tag="b1696" /gene_synonym="ECK1694; JW1686" /db_xref="EcoGene:EG13975" /db_xref="GeneID:945095" CDS complement(1778390..1779301) /gene="ydiP" /locus_tag="b1696" /gene_synonym="ECK1694; JW1686" /function="putative regulator; Not classified" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent; GO:0006350 - transcription" /note="putative ARAC-type regulatory protein" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator" /protein_id="NP_416211.1" /db_xref="GI:16129652" /db_xref="ASAP:ABE-0005660" /db_xref="UniProtKB/Swiss-Prot:P77402" /db_xref="EcoGene:EG13975" /db_xref="GeneID:945095" /translation="MYQRCFDNASETLFVAGKTPRLSRFAFSDDPKWESGHHVHDNET ELIYVKKGVARFTIDSSLYVAHADDIVVIERGRLHAVASDVNDPATTCTCALYGFQFQ GAEENQLLQPHSCPVIAAGQGKEVIKTLFNELSVILPQSKNSQTSSLWDAFAYTLAIL YYENFKNAYRSEQGYIKKDVLIKDILFYLNNNYREKITLEQLSKKFRASVSYICHEFT KEYRISPINYVIQRRMTEAKWSLTNTELSQAEISWRVGYENVDHFAKLFLRHVGCSPS DYRRQFKNCFAEQEILSEFPQPVSLVG" gene 1779617..1780381 /gene="ydiQ" /locus_tag="b1697" /gene_synonym="ECK1695; JW5276" /db_xref="EcoGene:EG13976" /db_xref="GeneID:946482" CDS 1779617..1780381 /gene="ydiQ" /locus_tag="b1697" /gene_synonym="ECK1695; JW5276" /function="putative enzyme; Not classified" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative electron transfer flavoprotein subunit" /protein_id="NP_416212.1" /db_xref="GI:16129653" /db_xref="ASAP:ABE-0005666" /db_xref="UniProtKB/Swiss-Prot:P76201" /db_xref="EcoGene:EG13976" /db_xref="GeneID:946482" /translation="MKIITCFKLVPEEQDIVVTPEYTLNFDNADAKISQFDLNAIEAA SQLATDDDEIAALTVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALA AAIEKIGFDLLIFGEGSGDLYAQQVGLLVGEILQLPVINAVSAIQRQGNTLVIERTLE DDVEVIELSVPAVLCVTSDINVPRIPSMKAILGAGKKPVNQWQASDIDWSQSAPLAEL VGIRVPPQTERKHIIIDNDSPEAIAELAEHLKKALN" gene 1780401..1781339 /gene="ydiR" /locus_tag="b1698" /gene_synonym="ECK1696; JW1688" /db_xref="EcoGene:EG13977" /db_xref="GeneID:945688" CDS 1780401..1781339 /gene="ydiR" /locus_tag="b1698" /gene_synonym="ECK1696; JW1688" /function="putative enzyme; Not classified" /GO_function="GO:0009055 - electron carrier activity" /note="putative flavoprotein" /codon_start=1 /transl_table=11 /product="putative electron transfer flavoprotein, FAD-binding subunit" /protein_id="NP_416213.1" /db_xref="GI:16129654" /db_xref="ASAP:ABE-0005668" /db_xref="UniProtKB/Swiss-Prot:P77378" /db_xref="EcoGene:EG13977" /db_xref="GeneID:945688" /translation="MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTDQAQAV MPYGPKCLYVLAQNDALQRTENYAESIAALLKDKHPAMLLLAATKRGKALAARLSVQL NAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSH QCPTETVPYVAPRHEILCRERRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAA VLNAEVGCSRPIAEGENWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVI VAINKDKNAPIFNYADYGLVGDIYKVVPALISQLSR" gene 1781395..1782684 /gene="ydiS" /locus_tag="b1699" /gene_synonym="ECK1697; JW1689" /db_xref="EcoGene:EG13978" /db_xref="GeneID:946212" CDS 1781395..1782684 /gene="ydiS" /locus_tag="b1699" /gene_synonym="ECK1697; JW1689" /function="putative enzyme; Not classified" /GO_function="GO:0009055 - electron carrier activity" /note="flavoprotein; probably electron transport" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_416214.1" /db_xref="GI:16129655" /db_xref="ASAP:ABE-0005671" /db_xref="UniProtKB/Swiss-Prot:P77337" /db_xref="EcoGene:EG13978" /db_xref="GeneID:946212" /translation="MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKN MTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHAS YTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILAD GVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSD GLMGGGFLYTNKDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEY SAHMVPEGGLAMVPQLVNEGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAA KERADFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNEMF TIDGKPNQPVRKMIMGHAKKIGLINLLKDGIKGATAL" gene 1782681..1782974 /gene="ydiT" /locus_tag="b1700" /gene_synonym="ECK1698; JW1690" /db_xref="EcoGene:EG13979" /db_xref="GeneID:946214" CDS 1782681..1782974 /gene="ydiT" /locus_tag="b1700" /gene_synonym="ECK1698; JW1690" /GO_function="GO:0009055 - electron carrier activity" /codon_start=1 /transl_table=11 /product="putative 3Fe-4S ferredoxin-type protein" /protein_id="NP_416215.1" /db_xref="GI:16129656" /db_xref="ASAP:ABE-0005674" /db_xref="UniProtKB/Swiss-Prot:P77714" /db_xref="EcoGene:EG13979" /db_xref="GeneID:946214" /translation="MSQNATVNVDIKLGVNKFHVDEGHPHIILAENPDINEFHKLMKA CPAGLYKQDDAGNIHFDSAGCLECGTCRVLCGNTILEQWQYPAGTFGIDFRYG" gene 1783031..1784677 /gene="fadK" /locus_tag="b1701" /gene_synonym="ECK1699; JW5910; ydiD" /db_xref="EcoGene:EG12357" /db_xref="GeneID:946213" CDS 1783031..1784677 /gene="fadK" /locus_tag="b1701" /gene_synonym="ECK1699; JW5910; ydiD" /function="putative enzyme; Not classified" /note="putative ligase/synthetase" /codon_start=1 /transl_table=11 /product="short chain acyl-CoA synthetase, anaerobic" /protein_id="NP_416216.4" /db_xref="GI:145698273" /db_xref="ASAP:ABE-0005676" /db_xref="UniProtKB/Swiss-Prot:P38135" /db_xref="EcoGene:EG12357" /db_xref="GeneID:946213" /translation="MKVTLTFNEQRRAAYRQQGLWGDASLADYWQQTARAMPDKIAVV DNHGASYTYSALDHAASCLANWMLAKGIESGDRIAFQLPGWCEFTVIYLACLKIGAVS VPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLILPLQNQLPQLQQIVGVDKL APATSSLSLSQIIADNTSLTTAITTHGDELAAVLFTSGTEGLPKGVMLTHNNILASER AYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPDACLALLEQQ RCTCMLGATPFVYDLLNVLEKQPADLSALRFFLCGGTTIPKKVARECQQRGIKLLSVY GSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDDARKTLPPGCEGEEASRGPNV FMGYFDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGRKKDIIVRGGENISSREVE DILLQHPKIHDACVVAMSDERLGERSCAYVVLKAPHHSLSLEEVVAFFSRKRVAKYKY PEHIVVIEKLPRTTSGKIQKFLLRKDIMRRLTQDVCEEIE" gene complement(1784734..1787112) /gene="ppsA" /locus_tag="b1702" /gene_synonym="ECK1700; JW1692; pps" /db_xref="EcoGene:EG10759" /db_xref="GeneID:946209" CDS complement(1784734..1787112) /gene="ppsA" /locus_tag="b1702" /gene_synonym="ECK1700; JW1692; pps" /EC_number="2.7.9.2" /function="enzyme; Central intermediary metabolism: Gluconeogenesis" /GO_process="GO:0006094 - gluconeogenesis" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate synthase" /protein_id="NP_416217.1" /db_xref="GI:16129658" /db_xref="ASAP:ABE-0005678" /db_xref="UniProtKB/Swiss-Prot:P23538" /db_xref="EcoGene:EG10759" /db_xref="GeneID:946209" /translation="MSNNGSSPLVLWYNQLGMNDVDRVGGKNASLGEMITNLSGMGVS VPNGFATTADAFNQFLDQSGVNQRIYELLDKTDIDDVTQLAKAGAQIRQWIIDTPFQP ELENAIREAYAQLSADDENASFAVRSSATAEDMPDASFAGQQETFLNVQGFDAVLVAV KHVFASLFNDRAISYRVHQGYDHRGVALSAGVQRMVRSDLASSGVMFSIDTESGFDQV VFITSAWGLGEMVVQGAVNPDEFYVHKPTLAANRPAIVRRTMGSKKIRMVYAPTQEHG KQVKIEDVPQEQRDIFSLTNEEVQELAKQAVQIEKHYGRPMDIEWAKDGHTGKLFIVQ ARPETVRSRGQVMERYTLHSQGKIIAEGRAIGHRIGAGPVKVIHDISEMNRIEPGDVL VTDMTDPDWEPIMKKASAIVTNRGGRTCHAAIIARELGIPAVVGCGDATERMKDGENV TVSCAEGDTGYVYAELLEFSVKSSSVETMPDLPLKVMMNVGNPDRAFDFACLPNEGVG LARLEFIINRMIGVHPRALLEFDDQEPQLQNEIREMMKGFDSPREFYVGRLTEGIATL GAAFYPKRVIVRLSDFKSNEYANLVGGERYEPDEENPMLGFRGAGRYVSDSFRDCFAL ECEAVKRVRNDMGLTNVEIMIPFVRTVDQAKAVVEELARQGLKRGENGLKIIMMCEIP SNALLAEQFLEYFDGFSIGSNDMTQLALGLDRDSGVVSELFDERNDAVKALLSMAIRA AKKQGKYVGICGQGPSDHEDFAAWLMEEGIDSLSLNPDTVVQTWLSLAELKK" gene 1787445..1788278 /gene="ppsR" /locus_tag="b1703" /gene_synonym="duf299; ECK1701; JW1693; ydiA" /db_xref="EcoGene:EG11132" /db_xref="GeneID:946207" CDS 1787445..1788278 /gene="ppsR" /locus_tag="b1703" /gene_synonym="duf299; ECK1701; JW1693; ydiA" /function="regulatory enzyme; Central intermediary metabolism: Gluconeogenesis" /codon_start=1 /transl_table=11 /product="PEP synthase kinase and PEP synthase pyrophosphorylase" /protein_id="NP_416218.1" /db_xref="GI:16129659" /db_xref="ASAP:ABE-0005682" /db_xref="UniProtKB/Swiss-Prot:P0A8A4" /db_xref="EcoGene:EG11132" /db_xref="GeneID:946207" /translation="MDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVE NESRARAVKDQIDAIYHQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQ EMKLDPTPIAHRTHGLNPNNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSR CGKTPTSLYLAMQFGIRAANYPFIADDMDNLVLPASLKPLQHKLFGLTIDPERLAAIR EERRENSRYASLRQCRMEVAEVEALYRKNQIPWINSTNYSVEEIATKILDIMGLSRRM Y" gene 1788435..1789481 /gene="aroH" /locus_tag="b1704" /gene_synonym="ECK1702; JW1694" /db_xref="EcoGene:EG10080" /db_xref="GeneID:946229" CDS 1788435..1789481 /gene="aroH" /locus_tag="b1704" /gene_synonym="ECK1702; JW1694" /EC_number="2.5.1.54" /function="enzyme; Amino acid biosynthesis: Tryptophan" /experiment="N-terminus verified by Edman degradation: PMID 6167722" /GO_process="GO:0000162 - tryptophan biosynthetic process" /note="3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, tryptophan repressible)" /codon_start=1 /transl_table=11 /product="3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tryptophan repressible" /protein_id="NP_416219.1" /db_xref="GI:16129660" /db_xref="ASAP:ABE-0005686" /db_xref="UniProtKB/Swiss-Prot:P00887" /db_xref="EcoGene:EG10080" /db_xref="GeneID:946229" /translation="MNRTDELRTARIESLVTPAELALRYPVTPGVATHVTDSRRRIEK ILNGEDKRLLVIIGPCSIHDLTAAMEYATRLQSLRNQYQSRLEIVMRTYFEKPRTVVG WKGLISDPDLNGSYRVNHGLELARKLLLQVNELGVPTATEFLDMVTGQFIADLISWGA IGARTTESQIHREMASALSCPVGFKNGTDGNTRIAVDAIRAARASHMFLSPDKNGQMT IYQTSGNPYGHIIMRGGKKPNYHADDIAAACDTLHEFDLPEHLVVDFSHGNCQKQHRR QLEVCEDICQQIRNGSTAIAGIMAESFLREGTQKIVGSQPLTYGQSITDPCLGWEDTE RLVEKLASAVDTRF" gene 1789613..1789804 /gene="ydiE" /locus_tag="b1705" /gene_synonym="ECK1703; JW1695" /db_xref="EcoGene:EG12391" /db_xref="GeneID:946205" CDS 1789613..1789804 /gene="ydiE" /locus_tag="b1705" /gene_synonym="ECK1703; JW1695" /codon_start=1 /transl_table=11 /product="hemin uptake protein HemP homolog" /protein_id="NP_416220.1" /db_xref="GI:16129661" /db_xref="ASAP:ABE-0005692" /db_xref="UniProtKB/Swiss-Prot:P0ACX9" /db_xref="EcoGene:EG12391" /db_xref="GeneID:946205" /translation="MRYTDSRKLTPETDANHKTASPQPIRRISSQTLLGPDGKLIIDH DGQEYLLRKTQAGKLLLTK" gene complement(1789808..1791244) /gene="ydiU" /locus_tag="b1706" /gene_synonym="ECK1704; JW1696" /db_xref="EcoGene:EG13980" /db_xref="GeneID:946219" CDS complement(1789808..1791244) /gene="ydiU" /locus_tag="b1706" /gene_synonym="ECK1704; JW1696" /codon_start=1 /transl_table=11 /product="UPF0061 family protein" /protein_id="NP_416221.1" /db_xref="GI:16129662" /db_xref="ASAP:ABE-0005694" /db_xref="UniProtKB/Swiss-Prot:P77649" /db_xref="EcoGene:EG13980" /db_xref="GeneID:946219" /translation="MTLSFVTRWRDELPETYTALSPTPLNNARLIWHNTELANTLSIP SSLFKNGAGVWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTM DWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE TAEPGAMLMRVAPSHLRFGHFEHFYYRRESEKVRQLADFAIRHYWSHLADDEDKYRLW FSDVVARTASLIAQWQTVGFAHGVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSD HQGRYSFDNQPAVALWNLQRLAQTLSPFVAVDALNEALDSYQQVLLTHYGERMRQKLG FMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTEQHSAASPLRDEFIDRAAFDDW FARYRGRLQQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMTELHRLHEAL RNPFSDRDDDYVSRPPDWGKRLEVSCSS" gene complement(1791307..1792020) /gene="ydiV" /locus_tag="b1707" /gene_synonym="cdgR; ECK1705; JW1697" /db_xref="EcoGene:EG13981" /db_xref="GeneID:946217" CDS complement(1791307..1792020) /gene="ydiV" /locus_tag="b1707" /gene_synonym="cdgR; ECK1705; JW1697" /codon_start=1 /transl_table=11 /product="anti-FlhD4C2 factor, inactive EAL family phosphodiesterase" /protein_id="NP_416222.1" /db_xref="GI:16129663" /db_xref="ASAP:ABE-0005696" /db_xref="UniProtKB/Swiss-Prot:P76204" /db_xref="EcoGene:EG13981" /db_xref="GeneID:946217" /translation="MKIFLENLYHSDCYFLPIRDNQQVLVGVELITHFSSEDGTVRIP TSRVIAQLTEEQHWQLFSEQLELLKSCQHFFIQHKLFAWLNLTPQVATLLLERDNYAG ELLKYPFIELLINENYPHLNEGKDNRGLLSLSQVYPLVLGNLGAGNSTMKAVFDGLFT RVMLDKSFIQQQITHRSFEPFIRAIQAQISPCCNCIIAGGIDTAEILAQITPFDFHAL QGCLWPAVPINQITTLVQR" gene complement(1792267..1792731) /gene="nlpC" /locus_tag="b1708" /gene_synonym="ECK1706; JW1698" /db_xref="EcoGene:EG11133" /db_xref="GeneID:946220" CDS complement(1792267..1792731) /gene="nlpC" /locus_tag="b1708" /gene_synonym="ECK1706; JW1698" /function="membrane; Macromolecule synthesis, modification: Lipoprotein" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="lipoprotein" /codon_start=1 /transl_table=11 /product="putative C40 clan peptidase lipoprotein" /protein_id="NP_416223.1" /db_xref="GI:16129664" /db_xref="ASAP:ABE-0005704" /db_xref="UniProtKB/Swiss-Prot:P23898" /db_xref="EcoGene:EG11133" /db_xref="GeneID:946220" /translation="MRFCLILITALLLAGCSHHKAPPPNARLSDSITVIAGLNDQLQS WHGTPYRYGGMTRRGVDCSGFVVVTMRDRFDLQLPRETKQQASIGTQIDKDELLPGDL VFFKTGSGQNGLHVGIYDTNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI" gene complement(1792809..1793558) /gene="btuD" /locus_tag="b1709" /gene_synonym="ECK1707; JW1699" /db_xref="EcoGene:EG10128" /db_xref="GeneID:945751" CDS complement(1792809..1793558) /gene="btuD" /locus_tag="b1709" /gene_synonym="ECK1707; JW1699" /EC_number="3.6.3.33" /function="transport; Transport of small molecules: Other" /GO_component="GO:0005737 - cytoplasm" /note="ATP-binding component of vitamin B12 transport system" /codon_start=1 /transl_table=11 /product="vitamin B12 ABC transporter ATPase" /protein_id="NP_416224.1" /db_xref="GI:16129665" /db_xref="ASAP:ABE-0005707" /db_xref="UniProtKB/Swiss-Prot:P06611" /db_xref="EcoGene:EG10128" /db_xref="GeneID:945751" /translation="MSIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLA RMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKT RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEP MNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRRE EVLTPPNLAQAYGMNFRRLDIEGHRMLISTI" gene complement(1793558..1794109) /gene="btuE" /locus_tag="b1710" /gene_synonym="ECK1708; JW1700" /db_xref="EcoGene:EG10129" /db_xref="GeneID:945915" CDS complement(1793558..1794109) /gene="btuE" /locus_tag="b1710" /gene_synonym="ECK1708; JW1700" /function="transport; Transport of small molecules: Other" /GO_component="GO:0042597 - periplasmic space" /note="vitamin B12 transport" /codon_start=1 /transl_table=11 /product="glutathione peroxidase" /protein_id="NP_416225.1" /db_xref="GI:16129666" /db_xref="ASAP:ABE-0005709" /db_xref="UniProtKB/Swiss-Prot:P06610" /db_xref="EcoGene:EG10129" /db_xref="GeneID:945915" /translation="MQDSILTTVVKDIDGEVTTLEKFAGNVLLIVNVASKCGLTPQYE QLENIQKAWVDRGFMVLGFPCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIEVNGE GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGKVIQ RFSPDMTPEDPIVMESIKLALAK" gene complement(1794172..1795152) /gene="btuC" /locus_tag="b1711" /gene_synonym="ECK1709; JW1701" /db_xref="EcoGene:EG10127" /db_xref="GeneID:945877" CDS complement(1794172..1795152) /gene="btuC" /locus_tag="b1711" /gene_synonym="ECK1709; JW1701" /function="transport; Transport of small molecules: Other" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="vitamin B12 transport permease protein" /codon_start=1 /transl_table=11 /product="vitamin B12 ABC transporter permease" /protein_id="NP_416226.1" /db_xref="GI:16129667" /db_xref="ASAP:ABE-0005712" /db_xref="UniProtKB/Swiss-Prot:P06609" /db_xref="EcoGene:EG10127" /db_xref="GeneID:945877" /translation="MLTLARQQQRQNIRWLLCLSVLMLLALLLSLCAGEQWISPGDWF TPRGELFVWQIRLPRTLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLI AAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRHLSTSRLLLAGVALGIICSALM TWAIYFSTSVDLRQLMYWMMGGFGGVDWRQSWLMLALIPVLLWICCQSRPMNMLALGE ISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLL PGCALAGASALLLADIVARLALAAAELPIGVVTATLGAPVFIWLLLKAGR" gene complement(1795253..1795552) /gene="ihfA" /locus_tag="b1712" /gene_synonym="ECK1710; hid; himA; JW1702" /db_xref="EcoGene:EG10440" /db_xref="GeneID:945472" CDS complement(1795253..1795552) /gene="ihfA" /locus_tag="b1712" /gene_synonym="ECK1710; hid; himA; JW1702" /function="factor; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006310 - DNA recombination" /note="integration host factor (IHF), alpha subunit; site specific recombination" /codon_start=1 /transl_table=11 /product="integration host factor (IHF), DNA-binding protein, alpha subunit" /protein_id="NP_416227.1" /db_xref="GI:16129668" /db_xref="ASAP:ABE-0005715" /db_xref="UniProtKB/Swiss-Prot:P0A6X7" /db_xref="EcoGene:EG10440" /db_xref="GeneID:945472" /translation="MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQV KLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE" gene complement(1795557..1797944) /gene="pheT" /locus_tag="b1713" /gene_synonym="ECK1711; JW1703" /db_xref="EcoGene:EG10710" /db_xref="GeneID:945382" CDS complement(1795557..1797944) /gene="pheT" /locus_tag="b1713" /gene_synonym="ECK1711; JW1703" /EC_number="6.1.1.20" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="phenylalanine tRNA synthetase, beta-subunit" /codon_start=1 /transl_table=11 /product="phenylalanine tRNA synthetase, beta subunit" /protein_id="NP_416228.1" /db_xref="GI:16129669" /db_xref="ASAP:ABE-0005717" /db_xref="UniProtKB/Swiss-Prot:P07395" /db_xref="EcoGene:EG10710" /db_xref="GeneID:945382" /translation="MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFHG VVVGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCGAPNCRQGLRVAVATIGAVLPGD FKIKAAKLRGEPSEGMLCSFSELGISDDHSGIIELPADAPIGTDIREYLKLDDNTIEI SVTPNRADCLGIIGVARDVAVLNQLPLVQPEIVPVGATIDDTLPITVEAPEACPRYLG RVVKGINVKAPTPLWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGI VVRMAKEGETLVLLDGTEAKLNADTLVIADHNKALAMGGIFGGEHSGVNDETQNVLLE CAFFSPLSITGRARRHGLHTDASHRYERGVDPALQHKAMERATRLLIDICGGEAGPVI DITNEATLPKRATITLRRSKLDRLIGHHIADEQVTDILRRLGCEVTEGKDEWQAVAPS WRFDMEIEEDLVEEVARVYGYNNIPDEPVQASLIMGTHREADLSLKRVKTLLNDKGYQ EVITYSFVDPKVQQMIHPGVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNR VRIFESGLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESV LDLTGKLNEVEFRAEANPALHPGQSAAIYLKGERIGFVGVVHPELERKLDLNGRTLVF ELEWNKLADRVVPQAREISRFPANRRDIAVVVAENVPAADILSECKKVGVNQVVGVNL FDVYRGKGVAEGYKSLAISLILQDTSRTLEEEEIAATVAKCVEALKERFQASLRD" gene complement(1797959..1798942) /gene="pheS" /locus_tag="b1714" /gene_synonym="ECK1712; JW5277; phe-act" /db_xref="EcoGene:EG10709" /db_xref="GeneID:946223" CDS complement(1797959..1798942) /gene="pheS" /locus_tag="b1714" /gene_synonym="ECK1712; JW5277; phe-act" /EC_number="6.1.1.20" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="phenylalanine tRNA synthetase, alpha-subunit" /codon_start=1 /transl_table=11 /product="phenylalanine tRNA synthetase, alpha subunit" /protein_id="NP_416229.1" /db_xref="GI:16129670" /db_xref="ASAP:ABE-0005722" /db_xref="UniProtKB/Swiss-Prot:P08312" /db_xref="EcoGene:EG10709" /db_xref="GeneID:946223" /translation="MSHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTT LRELPPEERPAAGAVINEAKEQVQQALNARKAELESAALNARLAAETIDVSLPGRRIE NGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF DTTRLLRTQTSGVQIRTMKAQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNI SFTNLKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVH PNVLRNVGIDPEVYSGFAFGMGMERLTMLRYGVTDLRSFFENDLRFLKQFK" gene complement(1799226..1799270) /gene="pheM" /locus_tag="b1715" /gene_synonym="ECK1713; JW1705; phtL" /db_xref="EcoGene:EG11272" /db_xref="GeneID:947212" CDS complement(1799226..1799270) /gene="pheM" /locus_tag="b1715" /gene_synonym="ECK1713; JW1705; phtL" /function="leader; Aminoacyl tRNA synthetases, tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="phenylalanyl-tRNA synthetase (pheST) operon leader peptide" /codon_start=1 /transl_table=11 /product="phenylalanyl-tRNA synthetase operon leader peptide" /protein_id="NP_416230.1" /db_xref="GI:16129671" /db_xref="ASAP:ABE-0005727" /db_xref="UniProtKB/Swiss-Prot:P0AD74" /db_xref="EcoGene:EG11272" /db_xref="GeneID:947212" /translation="MNAAIFRFFFYFST" gene complement(1799393..1799749) /gene="rplT" /locus_tag="b1716" /gene_synonym="ECK1714; JW1706; pdzA" /db_xref="EcoGene:EG10881" /db_xref="GeneID:945152" CDS complement(1799393..1799749) /gene="rplT" /locus_tag="b1716" /gene_synonym="ECK1714; JW1706; pdzA" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /note="50S ribosomal subunit protein L20, and regulator" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L20" /protein_id="NP_416231.1" /db_xref="GI:16129672" /db_xref="ASAP:ABE-0005729" /db_xref="UniProtKB/Swiss-Prot:P0A7L3" /db_xref="EcoGene:EG10881" /db_xref="GeneID:945152" /translation="MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQ YAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFD KVAFTALVEKAKAALA" gene complement(1799802..1799999) /gene="rpmI" /locus_tag="b1717" /gene_synonym="ECK1715; JW1707" /db_xref="EcoGene:EG11231" /db_xref="GeneID:946349" CDS complement(1799802..1799999) /gene="rpmI" /locus_tag="b1717" /gene_synonym="ECK1715; JW1707" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /note="50S ribosomal subunit protein A" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L35" /protein_id="NP_416232.3" /db_xref="GI:49176137" /db_xref="ASAP:ABE-0005732" /db_xref="UniProtKB/Swiss-Prot:P0A7Q1" /db_xref="EcoGene:EG11231" /db_xref="GeneID:946349" /translation="MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHL RPKAMVSKGDLGLVIACLPYA" gene complement(1800096..1800638) /gene="infC" /locus_tag="b1718" /gene_synonym="ECK1716; fit; JW5829; srjA" /db_xref="EcoGene:EG10506" /db_xref="GeneID:946225" CDS complement(1800096..1800638) /gene="infC" /locus_tag="b1718" /gene_synonym="ECK1716; fit; JW5829; srjA" /function="factor; Proteins - translation and modification" /experiment="N-terminus verified by Edman degradation: PMID 330233" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-3" /protein_id="NP_416233.1" /db_xref="GI:16129674" /db_xref="ASAP:ABE-0005734" /db_xref="UniProtKB/Swiss-Prot:P0A707" /db_xref="EcoGene:EG10506" /db_xref="GeneID:946225" /translation="MKGGKRVQTARPNRINGEIRAQEVRLTGLEGEQLGIVSLREALE KAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSSKEQKKKQKVIQVKEIKFRPGT DEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVES FPTKIEGRQMIMVLAPKKKQ" gene complement(1800642..1802570) /gene="thrS" /locus_tag="b1719" /gene_synonym="ECK1717; JW1709" /db_xref="EcoGene:EG11001" /db_xref="GeneID:946222" CDS complement(1800642..1802570) /gene="thrS" /locus_tag="b1719" /gene_synonym="ECK1717; JW1709" /EC_number="6.1.1.3" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="threonine tRNA synthetase" /codon_start=1 /transl_table=11 /product="threonyl-tRNA synthetase" /protein_id="NP_416234.1" /db_xref="GI:16129675" /db_xref="ASAP:ABE-0005736" /db_xref="UniProtKB/Swiss-Prot:P0A8M3" /db_xref="EcoGene:EG11001" /db_xref="GeneID:946222" /translation="MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGEL VDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGF YYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSIL DENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRI YGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRE LEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNC PGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ IRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNI PFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPV MIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAG IRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEV IEKLQQEIRSRSLKQLEE" gene 1803094..1804993 /gene="arpB" /locus_tag="b4494" /gene_synonym="ECK1718; JW1710; JW5278; ydiW; ydiX" /pseudo /db_xref="EcoGene:EG13983" /db_xref="GeneID:948935" CDS join(1803094..1803519,1803518..1804993) /gene="arpB" /locus_tag="b4494" /gene_synonym="ECK1718; JW1710; JW5278; ydiW; ydiX" /note="pseudogene, ankyrin repeats" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0005740" /db_xref="ASAP:ABE-0005742" /db_xref="ASAP:ABE-0285095" /db_xref="UniProtKB/Swiss-Prot:P76205" /db_xref="EcoGene:EG13983" /db_xref="GeneID:948935" gene 1805165..1805272 /gene="yniD" /locus_tag="b4535" /gene_synonym="ECK1719; JW5911" /db_xref="EcoGene:EG14423" /db_xref="GeneID:1450269" CDS 1805165..1805272 /gene="yniD" /locus_tag="b4535" /gene_synonym="ECK1719; JW5911" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_588455.2" /db_xref="GI:145698274" /db_xref="ASAP:ABE-0285056" /db_xref="UniProtKB/Swiss-Prot:Q2EES1" /db_xref="EcoGene:EG14423" /db_xref="GeneID:1450269" /translation="MPTKRFDKKHWKMVVVLLAICGAMLLLRWAAMIWG" gene complement(1805325..1806083) /gene="ydiY" /locus_tag="b1722" /gene_synonym="ECK1720; JW1711" /db_xref="EcoGene:EG13984" /db_xref="GeneID:946218" CDS complement(1805325..1806083) /gene="ydiY" /locus_tag="b1722" /gene_synonym="ECK1720; JW1711" /codon_start=1 /transl_table=11 /product="acid-inducible putative outer membrane protein" /protein_id="NP_416236.1" /db_xref="GI:16129676" /db_xref="ASAP:ABE-0005744" /db_xref="UniProtKB/Swiss-Prot:P76206" /db_xref="EcoGene:EG13984" /db_xref="GeneID:946218" /translation="MKLLKTVPAIVMLAGGMFASLNAAADDSVFTVMDDPASAKKPFE GNLNAGYLAQSGNTKSSSLTADTTMTWYGHTTAWSLWGNASNTSSNDERSSEKYAAGG RSRFNLTDYDYLFGQASWLTDRYNGYRERDVLTAGYGRQFLNGPVHSFRFEFGPGVRY DKYTDNASETQPLGYASGAYAWQLTDNAKFTQGVSVFGAEDTTLNSESALNVAINEHF GLKVAYNVTWNSEPPESAPEHTDRRTTLSLGYSM" gene 1806370..1807299 /gene="pfkB" /locus_tag="b1723" /gene_synonym="ECK1721; JW5280" /db_xref="EcoGene:EG10700" /db_xref="GeneID:946230" CDS 1806370..1807299 /gene="pfkB" /locus_tag="b1723" /gene_synonym="ECK1721; JW5280" /EC_number="2.7.1.11" /function="enzyme; Energy metabolism, carbon: Glycolysis" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="6-phosphofructokinase II; suppressor of pfkA" /codon_start=1 /transl_table=11 /product="6-phosphofructokinase II" /protein_id="NP_416237.3" /db_xref="GI:49176138" /db_xref="ASAP:ABE-0005748" /db_xref="UniProtKB/Swiss-Prot:P06999" /db_xref="EcoGene:EG10700" /db_xref="GeneID:946230" /translation="MVRIYTLTLAPSLDSATITPQIYPEGKLRCTAPVFEPGGGGINV ARAIAHLGGSATAIFPAGGATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGE QYRFVMPGAALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQKQG IRCIVDSSGEALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKA KRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMV RFGVAAGSAATLNQGTRLCSHDDTQKIYAYLSR" gene 1807400..1807690 /gene="ydiZ" /locus_tag="b1724" /gene_synonym="ECK1722; JW1713" /db_xref="EcoGene:EG13985" /db_xref="GeneID:946232" CDS 1807400..1807690 /gene="ydiZ" /locus_tag="b1724" /gene_synonym="ECK1722; JW1713" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416238.1" /db_xref="GI:16129678" /db_xref="ASAP:ABE-0005751" /db_xref="UniProtKB/Swiss-Prot:P64479" /db_xref="EcoGene:EG13985" /db_xref="GeneID:946232" /translation="MASGDLVRYVITVMLHEDTLTEINELNNYLTRDGFLLTMTDDEG NIHELGTNTFGLISTQSEEEIRELVSGLTQSATGKDPEITITTWEEWNSNRK" gene 1807796..1808656 /gene="yniA" /locus_tag="b1725" /gene_synonym="ECK1723; JW1714" /db_xref="EcoGene:EG13986" /db_xref="GeneID:946236" CDS 1807796..1808656 /gene="yniA" /locus_tag="b1725" /gene_synonym="ECK1723; JW1714" /codon_start=1 /transl_table=11 /product="fructosamine kinase family protein" /protein_id="NP_416239.1" /db_xref="GI:16129679" /db_xref="ASAP:ABE-0005755" /db_xref="UniProtKB/Swiss-Prot:P77739" /db_xref="EcoGene:EG13986" /db_xref="GeneID:946236" /translation="MWQAISRLLSEQLGEGEIELRNELPGGEVHAAWHLRYAGHDFFV KCDERELLPGFTAEADQLELLSRSKTVTVPKVWAVGADRDYSFLVMDYLPPRPLDAHS AFILGQQIARLHQWSDQPQFGLDFDNALSTTPQPNTWQRRWSTFFAEQRIGWQLELAA EKGIAFGNIDAIVEHIQQRLASHQPQPSLLHGDLWSGNCALGPDGPYIFDPACYWGDR ECDLAMLPLHTEQPPQIYDGYQSVSPLPADFLERQPVYQLYTLLNRARLFGGQHLVIA QQSLDRLLAA" gene complement(1808697..1809233) /gene="yniB" /locus_tag="b1726" /gene_synonym="ECK1724; JW1715" /db_xref="EcoGene:EG13987" /db_xref="GeneID:945140" CDS complement(1808697..1809233) /gene="yniB" /locus_tag="b1726" /gene_synonym="ECK1724; JW1715" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_416240.1" /db_xref="GI:16129680" /db_xref="ASAP:ABE-0005757" /db_xref="UniProtKB/Swiss-Prot:P76208" /db_xref="EcoGene:EG13987" /db_xref="GeneID:945140" /translation="MTYQQAGRIAVLKRILGWVIFIPALISTLISLLKFMNTRQENKE GINAVMLDFTHVMIDMMQANTPFLNLFWYNSPTPNFNGGVNVMFWVIFILIFVGLALQ DSGARMSRQARFLREGVEDQLILEKAKGEEGLTREQIESRIVVPHHTIFLQFFSLYIL PVICIAAGYVFFSLLGFI" gene 1809380..1810048 /gene="yniC" /locus_tag="b1727" /gene_synonym="ECK1725; JW1716" /db_xref="EcoGene:EG13988" /db_xref="GeneID:945632" CDS 1809380..1810048 /gene="yniC" /locus_tag="b1727" /gene_synonym="ECK1725; JW1716" /function="putative enzyme; Not classified" /note="putative phosphatase" /codon_start=1 /transl_table=11 /product="2-deoxyglucose-6-P phosphatase" /protein_id="NP_416241.1" /db_xref="GI:16129681" /db_xref="ASAP:ABE-0005761" /db_xref="UniProtKB/Swiss-Prot:P77247" /db_xref="EcoGene:EG13988" /db_xref="GeneID:945632" /translation="MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRN ELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVIARAISLVEETRPLLPGVREAVA LCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAK LGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLADVKLSSLTELTAK DLLG" gene 1810211..1810801 /gene="ydjM" /locus_tag="b1728" /gene_synonym="ECK1726; JW5281" /db_xref="EcoGene:EG13989" /db_xref="GeneID:945644" CDS 1810211..1810801 /gene="ydjM" /locus_tag="b1728" /gene_synonym="ECK1726; JW5281" /GO_process="GO:0009432 - SOS response" /codon_start=1 /transl_table=11 /product="inner membrane protein regulated by LexA" /protein_id="NP_416242.6" /db_xref="GI:226524720" /db_xref="ASAP:ABE-0005768" /db_xref="UniProtKB/Swiss-Prot:P64481" /db_xref="EcoGene:EG13989" /db_xref="GeneID:945644" /translation="MTAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLL PDIDHPKSFLGQRLKWISKPIARAFGHRGFTHSLLAVFALLATFYLKVPEGWFIPADA LQGMVLGYLSHILADMLTPAGVPLLWPCRWRFRLPILVPQKGNQLERFICMALFVWSV WMPHSLPENSAVRWSSQMINTLQIQFHRLIKHQVEY" gene 1810934..1812325 /gene="ydjN" /locus_tag="b1729" /gene_synonym="ECK1727; JW1718" /db_xref="EcoGene:EG13990" /db_xref="GeneID:946238" CDS 1810934..1812325 /gene="ydjN" /locus_tag="b1729" /gene_synonym="ECK1727; JW1718" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="NP_416243.1" /db_xref="GI:16129683" /db_xref="ASAP:ABE-0005771" /db_xref="UniProtKB/Swiss-Prot:P77529" /db_xref="EcoGene:EG13990" /db_xref="GeneID:946238" /translation="MNFPLIANIVVFVVLLFALAQTRHKQWSLAKKVLVGLVMGVVFG LALHTIYGSDSQVLKDSVQWFNIVGNGYVQLLQMIVMPLVFASILSAVARLHNASQLG KISFLTIGTLLFTTLIAALVGVLVTNLFGLTAEGLVQGGAETARLNAIESNYVGKVSD LSVPQLVLSFIPKNPFADLTGANPTSIISVVIFAAFLGVAALKLLKDDAPKGERVLAA IDTLQSWVMKLVRLVMQLTPYGVLALMTKVVAGSNLQDIIKLGSFVVASYLGLLIMFA VHGILLGINGVSPLKYFRKVWPVLTFAFTSRSSAASIPLNVEAQTRRLGVPESIASFA ASFGATIGQNGCAGLYPAMLAVMVAPTVGINPLDPMWIATLVGIVTVSSAGVAGVGGG ATFAALIVLPAMGLPVTLVALLISVEPLIDMGRTALNVSGSMTAGTLTSQWLKQTDKA ILDSEDDAELAHH" gene complement(1812329..1813132) /gene="ydjO" /locus_tag="b1730" /gene_synonym="ECK1728; JW1719" /db_xref="EcoGene:EG13991" /db_xref="GeneID:946237" CDS complement(1812329..1813132) /gene="ydjO" /locus_tag="b1730" /gene_synonym="ECK1728; JW1719" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416244.2" /db_xref="GI:226524721" /db_xref="ASAP:ABE-0005773" /db_xref="UniProtKB/Swiss-Prot:P76210" /db_xref="EcoGene:EG13991" /db_xref="GeneID:946237" /translation="MFSTNLIQSNYGDLNIKSLAFDSFKERLQSTMTALTFFISTGQC DCDEIAESNFNYMIAYMSNINYDASKPGAPALSFDTYLQDNVKYRVIINNLYGSEIRI RGINKDFIGMDVTSVFRPEKMTNLISIKNRLVIHYLRTIYYEQNYIHPVGSIFAAIQK NESLLKFPSIISMLNINLLFNPLNLPGMGSGVLEDIMSIPDSSLRKRLGYEVLSFSLQ AHSLSQECIDKLDIFFADDLFKYESVCIAAMEHLKSKATAPIQNGPLPA" gene complement(1813421..1813663) /gene="cedA" /locus_tag="b1731" /gene_synonym="ECK1729; JW1720; ydjP" /db_xref="EcoGene:EG13992" /db_xref="GeneID:946235" CDS complement(1813421..1813663) /gene="cedA" /locus_tag="b1731" /gene_synonym="ECK1729; JW1720; ydjP" /codon_start=1 /transl_table=11 /product="cell division modulator" /protein_id="NP_416245.2" /db_xref="GI:145698276" /db_xref="ASAP:ABE-0005776" /db_xref="UniProtKB/Swiss-Prot:P0AE60" /db_xref="EcoGene:EG13992" /db_xref="GeneID:946235" /translation="MKKPLRQQNRQIISYVPRTEPAPPEHAIKMDSFRDVWMLRGKYV AFVLMGESFLRSPAFTVPESAQRWANQIRQEGEVTE" gene 1813867..1816128 /gene="katE" /locus_tag="b1732" /gene_synonym="ECK1730; JW1721" /db_xref="EcoGene:EG10509" /db_xref="GeneID:946234" CDS 1813867..1816128 /gene="katE" /locus_tag="b1732" /gene_synonym="ECK1730; JW1721" /EC_number="1.11.1.6" /function="enzyme; Detoxification" /experiment="N-terminus verified by Edman degradation: PMID 3117785" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006805 - xenobiotic metabolic process" /note="catalase; hydroperoxidase HPII(III)" /codon_start=1 /transl_table=11 /product="catalase HPII, heme d-containing" /protein_id="YP_025308.1" /db_xref="GI:49176140" /db_xref="ASAP:ABE-0005780" /db_xref="UniProtKB/Swiss-Prot:P21179" /db_xref="EcoGene:EG10509" /db_xref="GeneID:946234" /translation="MSQHNEKNPHQHQSPLHDSSEAKPGMDSLAPEDGSHRPAAEPTP PGAQPTAPGSLKAPDTRNEKLNSLEDVRKGSENYALTTNQGVRIADDQNSLRAGSRGP TLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPNKIT PVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNTPIFFIQDAHKFPDFV HAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHT FRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELWEAIEAGDFPEY ELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFFAENEQAAFH PGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYHNFQRDGMHR MGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSPSFGEYYSHP RLFWLSQTPFEQRHIVDGFSFELSKVVRPYIRERVVDQLAHIDLTLAQAVAKNLGIEL TDDQLNITPPPDVNGLKKDPSLSLYAIPDGDVKGRVVAILLNDEVRSADLLAILKALK AKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNIADIADNGDAN YYLMEAYKHLKPIALAGDARKFKATIKIADQGEEGIVEADSADGSFMDELLTLMAAHR VWSRIPKIDKIPA" repeat_region 1816185..1816373 /note="RIP129 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site" gene complement(1816386..1817135) /gene="chbG" /locus_tag="b1733" /gene_synonym="celG; ECK1731; JW1722; ydjC" /db_xref="EcoGene:EG12198" /db_xref="GeneID:946231" CDS complement(1816386..1817135) /gene="chbG" /locus_tag="b1733" /gene_synonym="celG; ECK1731; JW1722; ydjC" /function="enzyme; Degradation of small molecules: N,N'-diacetylchitobiose" /codon_start=1 /transl_table=11 /product="chito-oligosaccharide deacetylase" /protein_id="NP_416247.1" /db_xref="GI:16129687" /db_xref="ASAP:ABE-0005783" /db_xref="UniProtKB/Swiss-Prot:P37794" /db_xref="EcoGene:EG12198" /db_xref="GeneID:946231" /translation="MERLLIVNADDFGLSKGQNYGIIEACRNGIVTSTTALVNGQAID HAVQLSRDEPSLAIGMHFVLTMGKPLTAMPGLTRDGVLGKWIWQLAEEDALPLEEITQ ELVSQYLRFIELFGRKPTHLDSHHHVHMFPQIFPIVARFAAEQGIALRADRQMAFDLP VNLRTTQGFSSAFYGEEISESLFLQVLDDAGHRGDRSLEVMCHPAFIDNTIRQSAYCF PRLTELDVLTSASLKGAIAQRGYRLGSYRDV" gene complement(1817148..1818500) /gene="chbF" /locus_tag="b1734" /gene_synonym="celF; ECK1732; JW1723; ydjD" /db_xref="EcoGene:EG10144" /db_xref="GeneID:946266" CDS complement(1817148..1818500) /gene="chbF" /locus_tag="b1734" /gene_synonym="celF; ECK1732; JW1723; ydjD" /EC_number="3.2.1.86" /function="enzyme; Degradation of small molecules: N,N'-diacetylchitobiose" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0009435 - NAD biosynthetic process" /codon_start=1 /transl_table=11 /product="phospho-chitobiase; general 6-phospho-beta-glucosidase activity" /protein_id="NP_416248.1" /db_xref="GI:16129688" /db_xref="ASAP:ABE-0005785" /db_xref="UniProtKB/Swiss-Prot:P17411" /db_xref="EcoGene:EG10144" /db_xref="GeneID:946266" /translation="MSQKLKVVTIGGGSSYTPELLEGFIKRYHELPVSELWLVDVEGG KPKLDIIFDLCQRMIDNAGVPMKLYKTLDRREALKDADFVTTQLRVGQLPARELDERI PLSHGYLGQETNGAGGLFKGLRTIPVIFDIVKDVEELCPNAWVINFTNPAGMVTEAVY RHTGFKRFIGVCNIPIGMKMFIRDVLMLKDSDDLSIDLFGLNHMVFIKDVLINGKSRF AELLDGVASGQLKASSVKNIFDLPFSEGLIRSLNLLPCSYLLYYFKQKEMLAIEMGEY YKGGARAQVVQKVEKQLFELYKNPELKVKPKELEQRGGAYYSDAACEVINAIYNDKQA EHYVNIPHHGQIDNIPADWAVEMTCKLGRDGATPHPRITHFDDKVMGLIHTIKGFEIA ASNAALSGEFNDVLLALNLSPLVHSDRDAELLAREMILAHEKWLPNFADCIAELKKAH " gene complement(1818605..1819447) /gene="chbR" /locus_tag="b1735" /gene_synonym="celD; ECK1733; JW1724" /db_xref="EcoGene:EG10143" /db_xref="GeneID:946247" CDS complement(1818605..1819447) /gene="chbR" /locus_tag="b1735" /gene_synonym="celD; ECK1733; JW1724" /function="regulator; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006350 - transcription" /note="negative transcriptional regulator of cel operon" /codon_start=1 /transl_table=11 /product="repressor of chb operon for N,N'-diacetylchitobiose utilization" /protein_id="NP_416249.1" /db_xref="GI:16129689" /db_xref="ASAP:ABE-0005790" /db_xref="UniProtKB/Swiss-Prot:P17410" /db_xref="EcoGene:EG10143" /db_xref="GeneID:946247" /translation="MMQPVINAPEIATAREQQLFNGKNFHVFIYNKTESISGLHQHDY YEFTLVLTGRYFQEINGKRVLLERGDFVFIPLGSHHQSFYEFGATRILNVGISKRFFE QHYLPLLPYCFVASQVYRTNNAFLTYVETVISSLNFRETGLEEFVEMVTFYVINRLRH YREEQVIDDVPQWLKSTVEKMHDKEQFSESALENMVALSAKSQEYLTRATQRYYGKTP MQIINEIRINFAKKQLEMTNYSVTDIAFEAGYSSPSLFIKTFKKLTSFTPKSYRKKLT EFNQ" gene complement(1819455..1819805) /gene="chbA" /locus_tag="b1736" /gene_synonym="celC; ECK1734; JW1725" /db_xref="EcoGene:EG10142" /db_xref="GeneID:946244" CDS complement(1819455..1819805) /gene="chbA" /locus_tag="b1736" /gene_synonym="celC; ECK1734; JW1725" /EC_number="2.7.1.69" /function="enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="PTS family enzyme IIA, cellobiose/arbutin/salicin sugar-specific" /codon_start=1 /transl_table=11 /product="N,N'-diacetylchitobiose-specific enzyme IIA component of PTS" /protein_id="NP_416250.1" /db_xref="GI:16129690" /db_xref="ASAP:ABE-0005792" /db_xref="UniProtKB/Swiss-Prot:P69791" /db_xref="EcoGene:EG10142" /db_xref="GeneID:946244" /translation="MMDLDNIPDTQTEAEELEEVVMGLIINSGQARSLAYAALKQAKQ GDFAAAKAMMDQSRMALNEAHLVQTKLIEGDAGEGKMKVSLVLVHAQDHLMTSMLARE LITELIELHEKLKA" gene complement(1819856..1821214) /gene="chbC" /locus_tag="b1737" /gene_synonym="celB; ECK1735; JW1726" /db_xref="EcoGene:EG10141" /db_xref="GeneID:945982" CDS complement(1819856..1821214) /gene="chbC" /locus_tag="b1737" /gene_synonym="celB; ECK1735; JW1726" /EC_number="2.7.1.69" /function="enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="PEP-dependent phosphotransferase enzyme II for cellobiose, arbutin, and salicin" /codon_start=1 /transl_table=11 /product="N,N'-diacetylchitobiose-specific enzyme IIC component of PTS" /protein_id="NP_416251.1" /db_xref="GI:16129691" /db_xref="ASAP:ABE-0005795" /db_xref="UniProtKB/Swiss-Prot:P17334" /db_xref="EcoGene:EG10141" /db_xref="GeneID:945982" /translation="MSNVIASLEKVLLPFAVKIGKQPHVNAIKNGFIRLMPLTLAGAM FVLINNVFLSFGEGSFFYSLGIRLDASTIETLNGLKGIGGNVYNGTLGIMSLMAPFFI GMALAEERKVDALAAGLLSVAAFMTVTPYSVGEAYAVGANWLGGANIISGIIIGLVVA EMFTFIVRRNWVIKLPDSVPASVSRSFSALIPGFIILSVMGIIAWALNTWGTNFHQII MDTISTPLASLGSVVGWAYVIFVPLLWFFGIHGALALTALDNGIMTPWALENIATYQQ YGSVEAALAAGKTFHIWAKPMLDSFIFLGGSGATLGLILAIFIASRRADYRQVAKLAL PSGIFQINEPILFGLPIIMNPVMFIPFVLVQPILAAITLAAYYMGIIPPVTNIAPWTM PTGLGAFFNTNGSVAALLVALFNLGIATLIYLPFVVVANKAQNAIDKEESEEDIANAL KF" gene complement(1821299..1821619) /gene="chbB" /locus_tag="b1738" /gene_synonym="celA; ECK1736; JW1727" /db_xref="EcoGene:EG10140" /db_xref="GeneID:945339" CDS complement(1821299..1821619) /gene="chbB" /locus_tag="b1738" /gene_synonym="celA; ECK1736; JW1727" /EC_number="2.7.1.69" /function="enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="PTS family enzyme IIB, cellobiose/arbutin/salicin sugar-specific" /codon_start=1 /transl_table=11 /product="N,N'-diacetylchitobiose-specific enzyme IIB component of PTS" /protein_id="NP_416252.1" /db_xref="GI:16129692" /db_xref="ASAP:ABE-0005797" /db_xref="UniProtKB/Swiss-Prot:P69795" /db_xref="EcoGene:EG10140" /db_xref="GeneID:945339" /translation="MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLA GEKGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVIDSLLYGKVDGLGVLKAAVAAIKK AAAN" gene complement(1821918..1822256) /gene="osmE" /locus_tag="b1739" /gene_synonym="anr; ECK1737; JW1728" /db_xref="EcoGene:EG10044" /db_xref="GeneID:945305" CDS complement(1821918..1822256) /gene="osmE" /locus_tag="b1739" /gene_synonym="anr; ECK1737; JW1728" /function="regulator; Global regulatory functions" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006970 - response to osmotic stress; GO:0006350 - transcription" /note="activator of ntrL gene" /codon_start=1 /transl_table=11 /product="osmotically-inducible lipoprotein" /protein_id="NP_416253.1" /db_xref="GI:16129693" /db_xref="ASAP:ABE-0005799" /db_xref="UniProtKB/Swiss-Prot:P0ADB1" /db_xref="EcoGene:EG10044" /db_xref="GeneID:945305" /translation="MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMS RAQVAQIAGKPSSEVSMIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCA EYDTDPQAAK" gene 1822458..1823285 /gene="nadE" /locus_tag="b1740" /gene_synonym="ECK1738; efg; JW1729; ntrL" /db_xref="EcoGene:EG10663" /db_xref="GeneID:946946" CDS 1822458..1823285 /gene="nadE" /locus_tag="b1740" /gene_synonym="ECK1738; efg; JW1729; ntrL" /EC_number="6.3.5.1" /function="enzyme; Biosynthesis of cofactors, carriers: Pyridine nucleotide" /experiment="N-terminus verified by Edman degradation: PMID 3025172,9298646" /GO_process="GO:0009435 - NAD biosynthetic process" /note="NAD synthetase, prefers NH3 over glutamine" /codon_start=1 /transl_table=11 /product="NAD synthetase, NH3/glutamine-dependent" /protein_id="NP_416254.1" /db_xref="GI:16129694" /db_xref="ASAP:ABE-0005803" /db_xref="UniProtKB/Swiss-Prot:P18843" /db_xref="EcoGene:EG10663" /db_xref="GeneID:946946" /translation="MTLQQQIIKALGAKPQINAEEEIRRSVDFLKSYLQTYPFIKSLV LGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQADEQDCQDAIAFIQ PDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGT DHAAEAITGFFTKYGDGGTDINPLYRLNKRQGKQLLAALACPEHLYKKAPTADLEDDR PSLPDEVALGVTYDNIDDYLEGKNVPQQVARTIENWYLKTEHKRRPPITVFDDFWKK" repeat_region 1823331..1823428 /note="RIP130 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene 1823515..1824402 /gene="cho" /locus_tag="b1741" /gene_synonym="dinM; ECK1739; JW1730; sosD; ydjQ" /db_xref="EcoGene:EG13993" /db_xref="GeneID:948996" CDS 1823515..1824402 /gene="cho" /locus_tag="b1741" /gene_synonym="dinM; ECK1739; JW1730; sosD; ydjQ" /EC_number="3.1.25.-" /function="putative enzyme; Not classified" /note="putative excinuclease subunit" /codon_start=1 /transl_table=11 /product="endonuclease of nucleotide excision repair" /protein_id="NP_416255.1" /db_xref="GI:16129695" /db_xref="ASAP:ABE-0005807" /db_xref="UniProtKB/Swiss-Prot:P76213" /db_xref="EcoGene:EG13993" /db_xref="GeneID:948996" /translation="MVRRLTSPRLEFEAAAIYEYPEHLRSFLNDLPTRPGVYLFHGES DTMPLYIGKSVNIRSRVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQ QPLFNKRLRRNRQLCALQLNEKRVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTIA DEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCW PWQGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGYKILCKPL LSGNYEITELDPANDQRAS" gene complement(1824362..1824937) /gene="ves" /locus_tag="b1742" /gene_synonym="ECK1740; JW1731; ydjR" /db_xref="EcoGene:EG13994" /db_xref="GeneID:946245" CDS complement(1824362..1824937) /gene="ves" /locus_tag="b1742" /gene_synonym="ECK1740; JW1731; ydjR" /experiment="N-terminus verified by Edman degradation: PMID 11873911" /codon_start=1 /transl_table=11 /product="cold- and stress-inducible protein" /protein_id="NP_416256.2" /db_xref="GI:90111320" /db_xref="ASAP:ABE-0005809" /db_xref="UniProtKB/Swiss-Prot:P76214" /db_xref="EcoGene:EG13994" /db_xref="GeneID:946245" /translation="MEYFDMRKMSVNLWRNAAGETREICTFPPAKRDFYWRASIASIA ANGEFSLFPGMERIVTLLEGGEMLLESADRFNHTLKPFQPFAFAADQVVKAKLTAGQM SMDFNIMTRLDVCKAKVRIAERTFTTFGSRGGVVFVINGAWQLGDKLLTTDQGACWFD GRHTLRLLQPQGKLLFSEINWLAGHSPDQVQ" gene complement(1825140..1825625) /gene="spy" /locus_tag="b1743" /gene_synonym="ECK1741; JW1732" /db_xref="EcoGene:EG13490" /db_xref="GeneID:946253" CDS complement(1825140..1825625) /gene="spy" /locus_tag="b1743" /gene_synonym="ECK1741; JW1732" /GO_component="GO:0042597 - periplasmic space" /note="periplasmic protein related to spheroblast formation" /codon_start=1 /transl_table=11 /product="periplasmic ATP-independent protein refolding chaperone, stress-induced" /protein_id="NP_416257.1" /db_xref="GI:16129697" /db_xref="ASAP:ABE-0005812" /db_xref="UniProtKB/Swiss-Prot:P77754" /db_xref="EcoGene:EG13490" /db_xref="GeneID:946253" /translation="MRKLTALFVASTLALGAANLAHAADTTTAAPADAKPMMHHKGKF GPHQDMMFKDLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIASDTFDKVKAE AQIAKMEEQRKANMLAHMETQNKIYNILTPEQKKQFNANFEKRLTERPAAKGKMPATA E" gene complement(1825955..1826923) /gene="astE" /locus_tag="b1744" /gene_synonym="ECK1742; JW1733; ydjS" /db_xref="EcoGene:EG13995" /db_xref="GeneID:946256" CDS complement(1825955..1826923) /gene="astE" /locus_tag="b1744" /gene_synonym="ECK1742; JW1733; ydjS" /EC_number="3.5.1.-" /function="enzyme; Not classified" /GO_process="GO:0009063 - cellular amino acid catabolic process" /codon_start=1 /transl_table=11 /product="succinylglutamate desuccinylase" /protein_id="NP_416258.1" /db_xref="GI:16129698" /db_xref="ASAP:ABE-0005815" /db_xref="UniProtKB/Swiss-Prot:P76215" /db_xref="EcoGene:EG13995" /db_xref="GeneID:946256" /translation="MDNFLALTLTGKKPVITEREINGVRWRWLGDGVLELTPLTPPQG ALVISAGIHGNETAPVEMLDALLGAISHGEIPLRWRLLVILGNPPALKQGKRYCHSDM NRMFGGRWQLFAESGETCRARELEQCLEDFYDQGKESVRWHLDLHTAIRGSLHPQFGV LPQRDIPWDEKFLTWLGAAGLEALVFHQEPGGTFTHFSARHFGALACTLELGKALPFG QNDLRQFAVTASAIAALLSGESVGIVRTPPLRYRVVSQITRHSPSFEMHMASDTLNFM PFEKGTLLAQDGEERFTVTHDVEYVLFPNPLVALGLRAGLMLEKIS" gene complement(1826916..1828259) /gene="astB" /locus_tag="b1745" /gene_synonym="ECK1743; JW1734; ydjT" /db_xref="EcoGene:EG13996" /db_xref="GeneID:946259" CDS complement(1826916..1828259) /gene="astB" /locus_tag="b1745" /gene_synonym="ECK1743; JW1734; ydjT" /EC_number="3.5.3.-" /function="enzyme; Not classified" /GO_process="GO:0009063 - cellular amino acid catabolic process" /codon_start=1 /transl_table=11 /product="succinylarginine dihydrolase" /protein_id="NP_416259.1" /db_xref="GI:16129699" /db_xref="ASAP:ABE-0005817" /db_xref="UniProtKB/Swiss-Prot:P76216" /db_xref="EcoGene:EG13996" /db_xref="GeneID:946259" /translation="MNAWEVNFDGLVGLTHHYAGLSFGNEASTRHRFQVSNPRLAAKQ GLLKMKALADAGFPQAVIPPHERPFIPVLRQLGFSGSDEQVLEKVARQAPHWLSSVSS ASPMWVANAATIAPSADTLDGKVHLTVANLNNKFHRSLEAPVTESLLKAIFNDEEKFS VHSALPQVALLGDEGAANHNRLGGHYGEPGMQLFVYGREEGNDTRPSRYPARQTREAS EAVARLNQVNPQQVIFAQQNPDVIDQGVFHNDVIAVSNRQVLFCHQQAFARQSQLLAN LRARVNGFMAIEVPATQVSVSDTVSTYLFNSQLLSRDDGSMMLVLPQECREHAGVWGY LNELLAADNPISELKVFDLRESMANGGGPACLRLRVVLTEEERRAVNPAVMMNDTLFN ALNDWVDRYYRDRLTAADLADPQLLREGREALDVLSQLLNLGSVYPFQREGGGNG" gene complement(1828256..1829734) /gene="astD" /locus_tag="b1746" /gene_synonym="ECK1744; JW5282; ydjU" /db_xref="EcoGene:EG13997" /db_xref="GeneID:946260" CDS complement(1828256..1829734) /gene="astD" /locus_tag="b1746" /gene_synonym="ECK1744; JW5282; ydjU" /EC_number="1.2.1.-" /function="enzyme; Not classified" /GO_process="GO:0009063 - cellular amino acid catabolic process" /codon_start=1 /transl_table=11 /product="succinylglutamic semialdehyde dehydrogenase" /protein_id="NP_416260.1" /db_xref="GI:16129700" /db_xref="ASAP:ABE-0005820" /db_xref="UniProtKB/Swiss-Prot:P76217" /db_xref="EcoGene:EG13997" /db_xref="GeneID:946260" /translation="MTLWINGDWITGQGASRVKRNPVSGEVLWQGNDADAAQVEQACR AARAAFPRWARLSFAERHAVVERFAALLESNKAELTAIIARETGKPRWEAATEVTAMI NKIAISIKAYHVRTGEQRSEMPDGAASLRHRPHGVLAVFGPYNFPGHLPNGHIVPALL AGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQGGRETGQALSALEDLDGLLF TGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQR CTCARRLLLKSGAQGDAFLARLVAVSQRLTPGNWDDEPQPFIGGLISEQAAQQVVTAW QQLEAMGGRPLLAPRLLQAGTSLLTPGIIEMTGVAGVPDEEVFGPLLRVWRYDTFDEA IRMANNTRFGLSCGLVSPEREKFDQLLLEARAGIVNWNKPLTGAASTAPFGGIGASGN HRPSAWYAADYCAWPMASLESDSLTLPATLNPGLDFSDEVVR" gene complement(1829731..1830765) /gene="astA" /locus_tag="b1747" /gene_synonym="ECK1745; JW1736; ydjV" /db_xref="EcoGene:EG13998" /db_xref="GeneID:946261" CDS complement(1829731..1830765) /gene="astA" /locus_tag="b1747" /gene_synonym="ECK1745; JW1736; ydjV" /EC_number="2.3.1.109" /function="enzyme; Not classified" /GO_process="GO:0009063 - cellular amino acid catabolic process" /codon_start=1 /transl_table=11 /product="arginine succinyltransferase" /protein_id="NP_416261.1" /db_xref="GI:16129701" /db_xref="ASAP:ABE-0005822" /db_xref="UniProtKB/Swiss-Prot:P0AE37" /db_xref="EcoGene:EG13998" /db_xref="GeneID:946261" /translation="MMVIRPVERSDVSALMQLASKTGGGLTSLPANEATLSARIERAI KTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELN VYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVV AEMRGVIDEHGYSPFWQSLGKRFFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLS QEAQDVIGQVHPQTAPARAVLEKEGFRYRNYIDIFDGGPTLECDIDRVRAIRKSRLVE VAEGQPAQGDFPACLVANENYHHFRVVLVRTDPATERLILTAAQLDALKCHAGDRVRL VRLCAEEKTA" gene complement(1830762..1831982) /gene="astC" /locus_tag="b1748" /gene_synonym="argM; cstC; ECK1746; JW1737; ydjW" /db_xref="EcoGene:EG13999" /db_xref="GeneID:946255" CDS complement(1830762..1831982) /gene="astC" /locus_tag="b1748" /gene_synonym="argM; cstC; ECK1746; JW1737; ydjW" /EC_number="2.6.1.11" /EC_number="2.6.1.17" /function="enzyme; Amino acid biosynthesis: Arginine" /GO_process="GO:0009063 - cellular amino acid catabolic process" /note="acetylornithine delta-aminotransferase" /codon_start=1 /transl_table=11 /product="succinylornithine transaminase, PLP-dependent" /protein_id="NP_416262.1" /db_xref="GI:16129702" /db_xref="ASAP:ABE-0005824" /db_xref="UniProtKB/Swiss-Prot:P77581" /db_xref="EcoGene:EG13999" /db_xref="GeneID:946255" /translation="MSQPITRENFDEWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDF AGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFC NSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAP LPADIRHAAYNDINSASALIDDSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNA LLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGGFPVGALLATEECARVMTVG THGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRG LGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDR FAAACEHFVSRGSS" gene 1832428..1833234 /gene="xthA" /locus_tag="b1749" /gene_synonym="ECK1747; JW1738; xth" /db_xref="EcoGene:EG11073" /db_xref="GeneID:946254" CDS 1832428..1833234 /gene="xthA" /locus_tag="b1749" /gene_synonym="ECK1747; JW1738; xth" /EC_number="3.1.11.2" /function="enzyme; Degradation of DNA" /GO_process="GO:0006308 - DNA catabolic process; GO:0009314 - response to radiation" /codon_start=1 /transl_table=11 /product="exonuclease III" /protein_id="NP_416263.1" /db_xref="GI:16129703" /db_xref="ASAP:ABE-0005829" /db_xref="UniProtKB/Swiss-Prot:P09030" /db_xref="EcoGene:EG11073" /db_xref="GeneID:946254" /translation="MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPL EEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGN VTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSK GFDDNRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFRR" gene 1833401..1834111 /gene="ydjX" /locus_tag="b1750" /gene_synonym="ECK1748; JW1739" /db_xref="EcoGene:EG14000" /db_xref="GeneID:946250" CDS 1833401..1834111 /gene="ydjX" /locus_tag="b1750" /gene_synonym="ECK1748; JW1739" /codon_start=1 /transl_table=11 /product="TVP38/TMEM64 family inner membrane protein" /protein_id="NP_416264.4" /db_xref="GI:90111321" /db_xref="ASAP:ABE-0005832" /db_xref="UniProtKB/Swiss-Prot:P76219" /db_xref="EcoGene:EG14000" /db_xref="GeneID:946250" /translation="MNAERKFLFACLIFALVIYAIHAFGLFDLLTDLPHLQTLIRQSG FFGYSLYILLFIIATLLLLPGSILVIAGGIVFGPLLGTLLSLIAATLASSCSFLLARW LGRDLLLKYVGHSNTFQAIEKGIARNGIDFLILTRLIPLFPYNIQNYAYGLTTIAFWP YTLISALTTLPGIVIYTVMASDLANEGITLRFILQLCLAGLALFILVQLAKLYARHKH VDLSASRRSPLTHPKNEG" gene 1834116..1834793 /gene="ydjY" /locus_tag="b1751" /gene_synonym="ECK1749; JW5283" /db_xref="EcoGene:EG14001" /db_xref="GeneID:946248" CDS 1834116..1834793 /gene="ydjY" /locus_tag="b1751" /gene_synonym="ECK1749; JW5283" /codon_start=1 /transl_table=11 /product="putative ferrodoxin-like lipoprotein" /protein_id="NP_416265.4" /db_xref="GI:90111322" /db_xref="ASAP:ABE-0005834" /db_xref="UniProtKB/Swiss-Prot:P76220" /db_xref="EcoGene:EG14001" /db_xref="GeneID:946248" /translation="MLQHYSVSWKKGLAALCLLAVAGLSGCDQQENAAAKVEYDGLSN SQPLRVDANNHTVTMLVQINGRFLTDDTRHGIVFKDGSNGHKSLFMGYATPKAFYEAL KEAGGTPGENMTMDNKETTHVTGSKLDISVNWQGAAKAYSFDEVIVDSNGKKLDMRFG GNLTAAEEKKTGCLVCLDSCPVGIVSNATYTYGAVEKRGEVKFKGNASVLPADNTLAT VTFKIAE" gene 1834808..1835515 /gene="ydjZ" /locus_tag="b1752" /gene_synonym="ECK1750; JW1741" /db_xref="EcoGene:EG14002" /db_xref="GeneID:946269" CDS 1834808..1835515 /gene="ydjZ" /locus_tag="b1752" /gene_synonym="ECK1750; JW1741" /codon_start=1 /transl_table=11 /product="TVP38/TMEM64 family inner membrane protein" /protein_id="NP_416266.1" /db_xref="GI:16129706" /db_xref="ASAP:ABE-0005837" /db_xref="UniProtKB/Swiss-Prot:P76221" /db_xref="EcoGene:EG14002" /db_xref="GeneID:946269" /translation="MMMMQSRKIWYYRITLIILLFAMLLAWALLPGVHEFINRSVAAF AAVDQQGIERFIQSYGALAAVVSFLLMILQAIAAPLPAFLITFANASLFGAFWGGLLS WTSSMAGAALCFFIARVMGREVVEKLTGKTVLDSMDGFFTRYGKHTILVCRLLPFVPF DPISYAAGLTSIRFRSFFIATGLGQLPATIVYSWAGSMLTGGTFWFVTGLFILFALTV VIFMAKKIWLERQKRNA" gene 1835515..1836063 /gene="ynjA" /locus_tag="b1753" /gene_synonym="ECK1751; JW1742" /db_xref="EcoGene:EG14003" /db_xref="GeneID:946270" CDS 1835515..1836063 /gene="ynjA" /locus_tag="b1753" /gene_synonym="ECK1751; JW1742" /codon_start=1 /transl_table=11 /product="carboxymuconolactone decarboxylase family protein" /protein_id="NP_416267.1" /db_xref="GI:16129707" /db_xref="ASAP:ABE-0005839" /db_xref="UniProtKB/Swiss-Prot:P76222" /db_xref="EcoGene:EG14003" /db_xref="GeneID:946270" /translation="MGLPPLSKIPLILRPQAWLHRRHYGEVLSPIRWWGRIPFIFYLV SMFVGWLERKRSPLDPVVRSLVSARIAQMCLCEFCVDITSMKVAERTGSSDKLLAVAD WRQSPLFSDEERLALEYAEAASVTPPTVDDALRTRLAAHFDAQALTELTALIGLQNLS ARFNSAMDIPAQGLCRIPEKRS" gene 1836073..1837239 /gene="ynjB" /locus_tag="b1754" /gene_synonym="ECK1752; JW5284" /db_xref="EcoGene:EG14004" /db_xref="GeneID:946271" CDS 1836073..1837239 /gene="ynjB" /locus_tag="b1754" /gene_synonym="ECK1752; JW5284" /codon_start=1 /transl_table=11 /product="putative ABC transporter periplasmic binding protein" /protein_id="NP_416268.2" /db_xref="GI:90111323" /db_xref="ASAP:ABE-0005841" /db_xref="UniProtKB/Swiss-Prot:P76223" /db_xref="EcoGene:EG14004" /db_xref="GeneID:946271" /translation="MRHCGWLLGLLSLFSLATHASDWQEIKNEAKGQTVWFNAWGGDT AINRYLDWVSGEMKTHYAINLKIVRLADAADAVKRIQTEAAAGRKTGGSVDLLWVNGE NFRTLKEANLLQTGWAETLPNWRYVDTQLPVREDFSVPTQGAESPWGGAQLTFIARRD VTPQPPQTPQALLEFAKANPGTVTYPRPPDFTGTAFLEQLLIMLTPDPAALKEAPDDA TFARVTAPLWQYLDVLHPYLWREGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQKI ASGDLPASSYSFGFREGMIGNVHFVTIPANANASAAAKVVANFLLSPDAQLRKADPAV WGDPSVLDPQKLPDGQRESLQSRMPQDLPPVLAEPHAGWVNALEQEWLHRYGTH" gene 1837212..1838747 /gene="ynjC" /locus_tag="b1755" /gene_synonym="ECK1753; JW5285" /db_xref="EcoGene:EG14005" /db_xref="GeneID:946273" CDS 1837212..1838747 /gene="ynjC" /locus_tag="b1755" /gene_synonym="ECK1753; JW5285" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport system permease protein" /codon_start=1 /transl_table=11 /product="putative ABC transporter permease" /protein_id="NP_416269.4" /db_xref="GI:145698277" /db_xref="ASAP:ABE-0005843" /db_xref="UniProtKB/Swiss-Prot:P76224" /db_xref="EcoGene:EG14005" /db_xref="GeneID:946273" /translation="MATPLRYALIFLLWAMVAVIYAPLIPAALTLISPALSLTHWQAL FADPQLPQALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCARLPWLLAIPHVA FATSALLLFADGGLLYDYFPYFTPPMDRFGIGLGLTLAVKESAFLLWILAAVLSEKWL LQQVIVLDSLGYSRWQCLNWLLLPSVAPALAMAMLAIVAWSLSVVDVAIILGPGNPPT LAVISWQWLTQGDIDQQTKGALASLLLMLLLAAYVLLSYLLWRSWRRTIPRVDGVRKP ATPLLPGNTLAIFLPLTGVLCVVLLAILADQSTINSEALINSLTMGLVATFIALLLLL LWLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLKLDGSWTAVVWGHLLWVMPWML FILQPAWQRIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPVLIAFAVGFAVGIAQYMP TLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFALTALVAKWVGYVRQ GLR" gene 1838747..1839400 /gene="ynjD" /locus_tag="b1756" /gene_synonym="ECK1754; JW5286" /db_xref="EcoGene:EG14006" /db_xref="GeneID:944965" CDS 1838747..1839400 /gene="ynjD" /locus_tag="b1756" /gene_synonym="ECK1754; JW5286" /function="putative transport; Not classified" /GO_component="GO:0005737 - cytoplasm" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="putative ABC transporter ATPase" /protein_id="NP_416270.1" /db_xref="GI:16129710" /db_xref="ASAP:ABE-0005845" /db_xref="UniProtKB/Swiss-Prot:P76909" /db_xref="EcoGene:EG14006" /db_xref="GeneID:944965" /translation="MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLF SWMIGALAEQFSCTGELWLNEQRIDILPTAQRQIGILFQDALLFDQFSVGQNLLLALP ATLKGNARRNAVNDALERSGLEGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP FSRLDVALRDNFRQWVFSEVRALAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR" gene 1839467..1840774 /gene="ynjE" /locus_tag="b1757" /gene_synonym="ECK1755; JW5287" /db_xref="EcoGene:EG14007" /db_xref="GeneID:946505" CDS 1839467..1840774 /gene="ynjE" /locus_tag="b1757" /gene_synonym="ECK1755; JW5287" /function="putative enzyme; Central intermediary metabolism: Sulfur metabolism" /GO_process="GO:0006790 - sulfur metabolic process" /note="putative thiosulfate sulfur transferase" /codon_start=1 /transl_table=11 /product="molybdopterin synthase sulfurtransferase" /protein_id="NP_416271.4" /db_xref="GI:90111324" /db_xref="ASAP:ABE-0005848" /db_xref="UniProtKB/Swiss-Prot:P78067" /db_xref="EcoGene:EG14007" /db_xref="GeneID:946505" /translation="MKRVSQMTALAMALGLACASSWAAELAKPLTLDQLQQQNGKAID TRPSAFYNGWPQTLNGPSGHELAALNLSASWLDKMSTEQLNAWIKQHNLKTDAPVALY GNDKDVDAVKTRLQKAGLTHISILSDALSEPSRLQKLPHFEQLVYPQWLHDLQQGKEV TAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKH GIRHDTTVILYGRDVYAAARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERGTPPKV KAEPDFGVKIPAQPQLMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGE IAGARWGHAGSDSTHMEDFHNPDGTMRSADDITAMWKAWNIKPEQQVSFYCGTGWRAS ETFMYARAMGWKNVSVYDGGWYEWSSDPKNPVATGERGPDSSK" gene complement(1840783..1841403) /gene="ynjF" /locus_tag="b1758" /gene_synonym="ECK1756; JW1747" /db_xref="EcoGene:EG14008" /db_xref="GeneID:946221" CDS complement(1840783..1841403) /gene="ynjF" /locus_tag="b1758" /gene_synonym="ECK1756; JW1747" /function="putative enzyme; Not classified" /note="putative cytochrome oxidase" /codon_start=1 /transl_table=11 /product="CDP-alcohol phosphatidyltransferase family inner membrane protein" /protein_id="NP_416272.2" /db_xref="GI:90111325" /db_xref="ASAP:ABE-0005850" /db_xref="UniProtKB/Swiss-Prot:P76226" /db_xref="EcoGene:EG14008" /db_xref="GeneID:946221" /translation="MLDRHLHPRIKPLLHQCVRVLDKPGITPDGLTLVGFAIGVLALP FLALGWYLAALVVILLNRLLDGLDGALARRRELTDAGGFLDISLDFLFYALVPFGFIL AAPEQNALAGGWLLFAFIGTGSSFLAFAALAAKHQIDNPGYAHKSFYYLGGLTEGTET ILLFVLGCLFPAWFAWFAWIFGALCWMTTFTRVWSGYLTLKSLQRQ" gene 1841490..1841897 /gene="nudG" /locus_tag="b1759" /gene_synonym="ECK1757; JW1748; orf135; ynjG" /db_xref="EcoGene:EG14009" /db_xref="GeneID:946277" CDS 1841490..1841897 /gene="nudG" /locus_tag="b1759" /gene_synonym="ECK1757; JW1748; orf135; ynjG" /EC_number="3.6.1.-" /note="5-hydroxy-CTP pyrophosphohydrolase" /codon_start=1 /transl_table=11 /product="CTP pyrophosphohydrolase; also hydrolyzes 2-hydroxy-dATP, 8-hydroxy-dGTP, 5-hydroxy-CTP, dCTP and 5-methyl-dCTP" /protein_id="NP_416273.1" /db_xref="GI:16129713" /db_xref="ASAP:ABE-0005855" /db_xref="UniProtKB/Swiss-Prot:P77788" /db_xref="EcoGene:EG14009" /db_xref="GeneID:946277" /translation="MKMIEVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVEPDES QRQALVRELREELGIEATVGEYVASHQREVSGRIIHLHAWHVPDFHGTLQAHEHQALV WCSPEEALQYPLAPADIPLLEAFMALRAARPAD" gene complement(1841863..1842135) /gene="ynjH" /locus_tag="b1760" /gene_synonym="ECK1758; JW1749" /db_xref="EcoGene:EG14010" /db_xref="GeneID:946279" CDS complement(1841863..1842135) /gene="ynjH" /locus_tag="b1760" /gene_synonym="ECK1758; JW1749" /codon_start=1 /transl_table=11 /product="DUF1496 family protein" /protein_id="NP_416274.1" /db_xref="GI:16129714" /db_xref="ASAP:ABE-0005858" /db_xref="UniProtKB/Swiss-Prot:P76227" /db_xref="EcoGene:EG14010" /db_xref="GeneID:946279" /translation="MSRALFAVVLAFPLIALANPHYRPDVEVNVPPEVFSSGGQSAQP CTQCCVYQDQNYSEGAVIKAEGILLQCQRDDKTLSTNPLVWRRVKP" gene 1842371..1843714 /gene="gdhA" /locus_tag="b1761" /gene_synonym="ECK1759; JW1750" /db_xref="EcoGene:EG10372" /db_xref="GeneID:946802" CDS 1842371..1843714 /gene="gdhA" /locus_tag="b1761" /gene_synonym="ECK1759; JW1750" /EC_number="1.4.1.4" /function="enzyme; Amino acid biosynthesis: Glutamate" /experiment="N-terminus verified by Edman degradation: PMID 6308576,9298646" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006537 - glutamate biosynthetic process" /note="NADP-specific glutamate dehydrogenase" /codon_start=1 /transl_table=11 /product="glutamate dehydrogenase, NADP-specific" /protein_id="NP_416275.1" /db_xref="GI:16129715" /db_xref="ASAP:ABE-0005865" /db_xref="UniProtKB/Swiss-Prot:P00370" /db_xref="EcoGene:EG10372" /db_xref="GeneID:946802" /translation="MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPK YRQMSLLERLVEPERVIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVN LSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGA DTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYF TEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTK EKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSLPVDIALPCATQNELDVDAAHQ LIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLG WKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGVI" repeat_region 1843724..1843816 /note="REP131 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(1843831..1844871) /gene="ynjI" /locus_tag="b1762" /gene_synonym="ECK1760; JW5288" /db_xref="EcoGene:EG14011" /db_xref="GeneID:946239" CDS complement(1843831..1844871) /gene="ynjI" /locus_tag="b1762" /gene_synonym="ECK1760; JW5288" /codon_start=1 /transl_table=11 /product="inner membrane protein" /protein_id="NP_416276.4" /db_xref="GI:90111326" /db_xref="ASAP:ABE-0005867" /db_xref="UniProtKB/Swiss-Prot:P76228" /db_xref="EcoGene:EG14011" /db_xref="GeneID:946239" /translation="MKKVLLQNHPGSEKYSFNGWEIFNSNFERMIKENKAMLLCKWGF YLTCVVAVMFVFAAITSNGLNERGLITAGCSFLYLLIMMGLIVRAGFKAKKEQLHYYQ AKGIEPLSIEKLQALQLIAPYRFYHKQWSETLEFWPRKPEPGKDTFQYHVLPFDSIDI ISKRRESLEDQWGIEDSESYCALMEHFLSGDHGANTFKANMEEAPEQVIALLNKFAVF PSDYISDCANHSSGKSSAKLIWAAELSWMISISSTAFQNGTIEEELAWHYIMLASRKA HELFESEEDYQKNSQMGFLYWHICCYRRKLTDAELEACYRYDKQFWEHYSKKCRWPIR NVPWGASSVKYS" gene complement(1844999..1846960) /gene="topB" /locus_tag="b1763" /gene_synonym="ECK1761; JW1752; mutR" /db_xref="EcoGene:EG11014" /db_xref="GeneID:946141" CDS complement(1844999..1846960) /gene="topB" /locus_tag="b1763" /gene_synonym="ECK1761; JW1752; mutR" /EC_number="5.99.1.2" /function="enzyme; DNA - replication, repair, restriction/modification" /experiment="N-terminus verified by Edman degradation: PMID 2553698" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication; GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="DNA topoisomerase III" /protein_id="NP_416277.1" /db_xref="GI:16129717" /db_xref="ASAP:ABE-0005869" /db_xref="UniProtKB/Swiss-Prot:P14294" /db_xref="EcoGene:EG11014" /db_xref="GeneID:946141" /translation="MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGH LLEQAQPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEIVHAG DPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCV SALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVA KDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIV TSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCR YLPEEHFAGRHAVMNAISVHAPDLLPQPVVDPDIRNRCWDDKKVDAHHAIIPTARSSA INLTENEAKVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLL GSKERDEENDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQ DKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHSLPEMAT RPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVRQFRGIVAPGSGG SADKKKAAPRKRSAKKSPPADEVGSGAIA" gene complement(1846965..1848008) /gene="selD" /locus_tag="b1764" /gene_synonym="ECK1762; fdhB; JW1753" /db_xref="EcoGene:EG10943" /db_xref="GeneID:946768" CDS complement(1846965..1848008) /gene="selD" /locus_tag="b1764" /gene_synonym="ECK1762; fdhB; JW1753" /EC_number="2.7.9.3" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="selenophosphate synthase, H(2)Se added to acrylyl-tRNA" /codon_start=1 /transl_table=11 /product="selenophosphate synthase" /protein_id="NP_416278.1" /db_xref="GI:16129718" /db_xref="ASAP:ABE-0005872" /db_xref="UniProtKB/Swiss-Prot:P16456" /db_xref="EcoGene:EG10943" /db_xref="GeneID:946768" /translation="MSENSIRLTQYSHGAGCGCKISPKVLETILHSEQAKFVDPNLLV GNETRDDAAVYDLGNGTSVISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMA IAILGWPINKLSPEIAREVTEGGRYACRQAGIALAGGHSIDAPEPIFGLAVTGIVPTE RVKKNSTAQAGCKLFLTKPLGIGVLTTAEKKSLLKPEHQGLATEVMCRMNIAGASFAN IEGVKAMTDVTGFGLLGHLSEMCQGAGVQARVDYEAIPKLPGVEEYIKLGAVPGGTER NFASYGHLMGEMPREVRDLLCDPQTSGGLLLAVMPEAENEVKATAAEFGIELTAIGEL VPARGGRAMVEIR" gene complement(1848125..1848676) /gene="ydjA" /locus_tag="b1765" /gene_synonym="ECK1763; JW1754" /db_xref="EcoGene:EG11134" /db_xref="GeneID:945964" CDS complement(1848125..1848676) /gene="ydjA" /locus_tag="b1765" /gene_synonym="ECK1763; JW1754" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_416279.1" /db_xref="GI:16129719" /db_xref="ASAP:ABE-0005875" /db_xref="UniProtKB/Swiss-Prot:P0ACY1" /db_xref="EcoGene:EG11134" /db_xref="GeneID:945964" /translation="MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQP WHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKV PRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYL GTPQLKASTSINVPDPTPFVTYF" gene 1848837..1850693 /gene="sppA" /locus_tag="b1766" /gene_synonym="ECK1764; JW1755" /db_xref="EcoGene:EG10968" /db_xref="GeneID:946281" CDS 1848837..1850693 /gene="sppA" /locus_tag="b1766" /gene_synonym="ECK1764; JW1755" /EC_number="3.4.-.-" /function="enzyme; Degradation of proteins, peptides, glyco" /note="protease IV, a signal peptide peptidase" /codon_start=1 /transl_table=11 /product="protease IV (signal peptide peptidase)" /protein_id="NP_416280.1" /db_xref="GI:16129720" /db_xref="ASAP:ABE-0005880" /db_xref="UniProtKB/Swiss-Prot:P08395" /db_xref="EcoGene:EG10968" /db_xref="GeneID:946281" /translation="MRTLWRFIAGFFKWTWRLLNFVREMVLNLFFIFLVLVGVGIWMQ VSGGDSKETASRGALLLDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVN TIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQY YLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRD DMSPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQGLLEGLTKTGGDTAKYA LENKLVDALASSAEIEKALTKEFGWSKTDKNYRAISYYDYALKTPADTGDSIGVVFAN GAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAA RAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGV HTDGVSTSPLADVSITRALPPEAQLMMQLSIENGYKRFITLVADARHSTPEQIDKIAQ GHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKVKQWHLEYYVDEPTFFDKVMDNMSG SVRAMLPDAFQAMLPAPLASVASTVKSESDKLAAFNDPQNRYAFCLTCANMR" gene 1850860..1851876 /gene="ansA" /locus_tag="b1767" /gene_synonym="ECK1765; JW1756" /db_xref="EcoGene:EG10045" /db_xref="GeneID:946278" CDS 1850860..1851876 /gene="ansA" /locus_tag="b1767" /gene_synonym="ECK1765; JW1756" /EC_number="3.5.1.1" /function="enzyme; Degradation of small molecules: Amino acids" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009063 - cellular amino acid catabolic process" /codon_start=1 /transl_table=11 /product="cytoplasmic L-asparaginase 1" /protein_id="NP_416281.1" /db_xref="GI:16129721" /db_xref="ASAP:ABE-0005886" /db_xref="UniProtKB/Swiss-Prot:P0A962" /db_xref="EcoGene:EG10045" /db_xref="GeneID:946278" /translation="MQKKSIYVAYTGGTIGMQRSEQGYIPVSGHLQRQLALMPEFHRP EMPDFTIHEYTPLMDSSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALS FMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINEVTLFFNNRLYRGNR TTKAHADGFDAFASPNLPPLLEAGIHIRRLNTPPAPHGEGELIVHPITPQPIGVVTIY PGISADVVRNFLRQPVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNLTQCMSG KVNMGGYATGNALAHAGVIGGADMTVEATLTKLHYLLSQELDTETIRKAMSQNLRGEL TPDD" gene 1851887..1852528 /gene="pncA" /locus_tag="b1768" /gene_synonym="ECK1766; JW1757; nam; ydjB" /db_xref="EcoGene:EG11135" /db_xref="GeneID:946276" CDS 1851887..1852528 /gene="pncA" /locus_tag="b1768" /gene_synonym="ECK1766; JW1757; nam; ydjB" /EC_number="3.5.1.-" /EC_number="3.5.1.19" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009435 - NAD biosynthetic process" /codon_start=1 /transl_table=11 /product="nicotinamidase/pyrazinamidase" /protein_id="NP_416282.4" /db_xref="GI:90111327" /db_xref="ASAP:ABE-0005891" /db_xref="UniProtKB/Swiss-Prot:P21369" /db_xref="EcoGene:EG11135" /db_xref="GeneID:946276" /translation="MPPRALLLVDLQNDFCAGGALAVPEGDSTVDVANRLIDWCQSRG EAVIASQDWHPANHGSFASQHGVEPYTPGQLDGLPQTFWPDHCVQNSEGAQLHPLLHQ KAIAAVFHKGENPLVDSYSAFFDNGRRQKTSLDDWLRDHEIDELIVMGLATDYCVKFT VLDALQLGYKVNVITDGCRGVNIQPQDSAHAFMEMSAAGATLYTLADWEETQG" repeat_region 1852562..1852597 /note="REP132 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1852621..1853979) /gene="ydjE" /locus_tag="b1769" /gene_synonym="ECK1767; JW1758" /db_xref="EcoGene:EG12369" /db_xref="GeneID:946274" CDS complement(1852621..1853979) /gene="ydjE" /locus_tag="b1769" /gene_synonym="ECK1767; JW1758" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative MFS sugar transporter, membrane protein" /protein_id="NP_416283.1" /db_xref="GI:16129723" /db_xref="ASAP:ABE-0005894" /db_xref="UniProtKB/Swiss-Prot:P38055" /db_xref="EcoGene:EG12369" /db_xref="GeneID:946274" /translation="MEQYDQIGARLDRLPLARFHYRIFGIISFSLLLTGFLSYSGNVV LAKLVSNGWSNNFLNAAFTSALMFGYFIGSLTGGFIGDYFGRRRAFRINLLIVGIAAT GAAFVPDMYWLIFFRFLMGTGMGALIMVGYASFTEFIPATVRGKWSARLSFVGNWSPM LSAAIGVVVIAFFSWRIMFLLGGIGILLAWFLSGKYFIESPRWLAGKGQIAGAECQLR EVEQQIEREKSIRLPPLTSYQSNSKVKVIKGTFWLLFKGEMLRRTLVAITVLIAMNIS LYTITVWIPTIFVNSGIDVDKSILMTAVIMIGAPVGIFIAALIIDHFPRRLFGSTLLI IIAVLGYIYSIQTTEWAILIYGLVMIFFLYMYVCFASAVYIPELWPTHLRLRGSGFVN AVGRIVAVFTPYGVAALLTHYGSITVFMVLGVMLLLCALVLSIFGIETRKVSLEEISE VN" gene complement(1854096..1854854) /gene="ydjF" /locus_tag="b1770" /gene_synonym="ECK1768; JW1759" /db_xref="EcoGene:EG13482" /db_xref="GeneID:946272" CDS complement(1854096..1854854) /gene="ydjF" /locus_tag="b1770" /gene_synonym="ECK1768; JW1759" /function="putative regulator; Not classified" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent; GO:0006350 - transcription" /note="putative DEOR-type transcriptional regulator" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator" /protein_id="NP_416284.1" /db_xref="GI:16129724" /db_xref="ASAP:ABE-0005897" /db_xref="UniProtKB/Swiss-Prot:P77721" /db_xref="EcoGene:EG13482" /db_xref="GeneID:946272" /translation="MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLE DEGFLTRTYGGAVLNTAMLTENIHFYKRASSFYEEKQLIARKALPFIDNKTTMAADSS STVMELLKLLQDRSGLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEI IRRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFV QLADFSHINYIITDKSPGAEWIAFCKDNNIQLVW" gene complement(1854991..1855971) /gene="ydjG" /locus_tag="b1771" /gene_synonym="ECK1769; JW1760" /db_xref="EcoGene:EG13483" /db_xref="GeneID:946283" CDS complement(1854991..1855971) /gene="ydjG" /locus_tag="b1771" /gene_synonym="ECK1769; JW1760" /codon_start=1 /transl_table=11 /product="methylglyoxal reductase, NADH-dependent" /protein_id="NP_416285.1" /db_xref="GI:16129725" /db_xref="ASAP:ABE-0005901" /db_xref="UniProtKB/Swiss-Prot:P77256" /db_xref="EcoGene:EG13483" /db_xref="GeneID:946283" /translation="MKKIPLGTTDITLSRMGLGTWAIGGGPAWNGDLDRQICIDTILE AHRCGINLIDTAPGYNFGNSEVIVGQALKKLPREQVVVETKCGIVWERKGSLFNKVGD RQLYKNLSPESIREEVAASLQRLGIDYIDIYMTHWQSVPPFFTPIAETVAVLNELKSE GKIRAIGAANVDADHIREYLQYGELDIIQAKYSILDRAMENELLPLCRDNGIVVQVYS PLEQGLLTGTITRDYVPGGARANKVWFQRENMLKVIDMLEQWQPLCARYQCTIPTLAL AWILKQSDLISILSGATAPEQVRENVAALNINLSDADATLMREMAEALER" gene complement(1855981..1856928) /gene="ydjH" /locus_tag="b1772" /gene_synonym="ECK1770; JW5289" /db_xref="EcoGene:EG13484" /db_xref="GeneID:946285" CDS complement(1855981..1856928) /gene="ydjH" /locus_tag="b1772" /gene_synonym="ECK1770; JW5289" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative kinase" /protein_id="NP_416286.4" /db_xref="GI:90111328" /db_xref="ASAP:ABE-0005903" /db_xref="UniProtKB/Swiss-Prot:P77493" /db_xref="EcoGene:EG13484" /db_xref="GeneID:946285" /translation="MDNLDVICIGAAIVDIPLQPVSKNIFDVDSYPLERIAMTTGGDA INEATIISRLGHRTALMSRIGKDAAGQFILDHCRKENIDIQSLKQDVSIDTSINVGLV TEDGERTFVTNRNGSLWKLNIDDVDFARFSQAKLLSLASIFNSPLLDGKALTEIFTQA KARQMIICADMIKPRLNETLDDICEALSYVDYLFPNFAEAKLLTGKETLDEIADCFLA CGVKTVVIKTGKDGCFIKRGDMTMKVPAVAGITAIDTIGAGDNFASGFIAALLEGKNL RECARFANATAAISVLSVGATTGVKNRKLVEQLLEEYEG" gene complement(1856933..1857769) /gene="ydjI" /locus_tag="b1773" /gene_synonym="ECK1771; JW1762" /db_xref="EcoGene:EG13485" /db_xref="GeneID:946291" CDS complement(1856933..1857769) /gene="ydjI" /locus_tag="b1773" /gene_synonym="ECK1771; JW1762" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative aldolase" /protein_id="NP_416287.1" /db_xref="GI:16129727" /db_xref="ASAP:ABE-0005906" /db_xref="UniProtKB/Swiss-Prot:P77704" /db_xref="EcoGene:EG13485" /db_xref="GeneID:946291" /translation="MLADIRYWENDATNKHYAIAHFNVWNAEMLMGVIDAAEEAKSPV IISFGTGFVGNTSFEDFSHMMVSMAQKATVPVITHWDHGRSMEIIHNAWTHGMNSLMR DASAFDFEENIRLTKEAVDFFHPLGIPVEAELGHVGNETVYEEALAGYHYTDPDQAAE FVERTGCDSLAVAIGNQHGVYTSEPQLNFEVVKRVRDAVSVPLVLHGASGISDADIKT AISLGIAKINIHTELCQAAMVAVKENQDQPFLHLEREVRKAVKERALEKIKLFGSDGK AE" gene complement(1857790..1858833) /gene="ydjJ" /locus_tag="b1774" /gene_synonym="ECK1772; JW1763" /db_xref="EcoGene:EG13486" /db_xref="GeneID:946292" CDS complement(1857790..1858833) /gene="ydjJ" /locus_tag="b1774" /gene_synonym="ECK1772; JW1763" /function="putative enzyme; Not classified" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="putative Zn-dependent NAD(P)-binding oxidoreductase" /protein_id="NP_416288.1" /db_xref="GI:16129728" /db_xref="ASAP:ABE-0005908" /db_xref="UniProtKB/Swiss-Prot:P77280" /db_xref="EcoGene:EG13486" /db_xref="GeneID:946292" /translation="MKNSKAILQVPGTMKIISAEIPVPKEDEVLIKVEYVGICGSDVH GFESGPFIPPKDPNQEIGLGHECAGTVVAVGSRVRKFKPGDRVNIEPGVPCGHCRYCL EGKYNICPDVDFMATQPNYRGALTHYLCHPESFTYKLPDNMDTMEGALVEPAAVGMHA AMLADVKPGKKIIILGAGCIGLMTLQACKCLGATEIAVVDVLEKRLAMAEQLGATVVI NGAKEDTIARCQQFTEDMGADIVFETAGSAVTVKQAPYLVMRGGKIMIVGTVPGDSAI NFLKINREVTIQTVFRYANRYPVTIEAISSGRFDVKSMVTHIYDYRDVQQAFEESVNN KRDIIKGVIKISD" gene complement(1858850..1860229) /gene="ydjK" /locus_tag="b1775" /gene_synonym="ECK1773; JW5290" /db_xref="EcoGene:EG13487" /db_xref="GeneID:946293" CDS complement(1858850..1860229) /gene="ydjK" /locus_tag="b1775" /gene_synonym="ECK1773; JW5290" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative MFS sugar transporter, membrane protein" /protein_id="NP_416289.1" /db_xref="GI:16129729" /db_xref="ASAP:ABE-0005910" /db_xref="UniProtKB/Swiss-Prot:P76230" /db_xref="EcoGene:EG13487" /db_xref="GeneID:946293" /translation="MEQITKPHCGARLDRLPDCRWHSSMFAIVAFGLLVCWSNAVGGL ILAQLKALGWTDNSTTATFSAITTAGMFLGALVGGIIGDKTGRRNAFILYEAIHIASM VVGAFSPNMDFLIACRFVMGVGLGALLVTLFAGFTEYMPGRNRGTWSSRVSFIGNWSY PLCSLIAMGLTPLISAEWNWRVQLLIPAILSLIATALAWRYFPESPRWLESRGRYQEA EKVMRSIEEGVIRQTGKPLPPVVIADDGKAPQAVPYSALLTGVLLKRVILGSCVLIAM NVVQYTLINWLPTIFMTQGINLKDSIVLNTMSMFGAPFGIFIAMLVMDKIPRKTMGVG LLILIAVLGYIYSLQTSMLLITLIGFFLITFVYMYVCYASAVYVPEIWPTEAKLRGSG LANAVGRISGIAAPYAVAVLLSSYGVTGVFILLGAVSIIVAIAIATIGIETKGVSVES LSIDAVANK" gene complement(1860256..1861332) /gene="ydjL" /locus_tag="b1776" /gene_synonym="ECK1774; JW1765" /db_xref="EcoGene:EG13488" /db_xref="GeneID:946299" CDS complement(1860256..1861332) /gene="ydjL" /locus_tag="b1776" /gene_synonym="ECK1774; JW1765" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative Zn-dependent NAD(P)-binding oxidoreductase" /protein_id="NP_416290.1" /db_xref="GI:16129730" /db_xref="ASAP:ABE-0005912" /db_xref="UniProtKB/Swiss-Prot:P77539" /db_xref="EcoGene:EG13488" /db_xref="GeneID:946299" /translation="MKALARFGKAFGGYKMIDVPQPMCGPEDVVIEIKAAAICGADMK HYNVDSGSDEFNSIRGHEFAGCIAQVGEKVKDWKVGQRVVSDNSGHVCGVCPACEQGD FLCCTEKVNLGLDNNTWGGGFSKYCLVPGEILKIHRHALWEIPDGVDYEDAAVLDPIC NAYKSIAQQSKFLPGQDVVVIGTGPLGLFSVQMARIMGAVNIVVVGLQEDVAVRFPVA KELGATAVVNGSTEDVVARCQQICGKDNLGLVIECSGANIALKQAIEMLRPNGEVVRV GMGFKPLDFSINDITAWNKSIIGHMAYDSTSWRNAIRLLASGAIKVKPMITHRIGLSQ WREGFDAMVDKTAIKVIMTYDFDE" gene complement(1861702..1861974) /gene="yeaC" /locus_tag="b1777" /gene_synonym="ECK1775; JW1766" /db_xref="EcoGene:EG13489" /db_xref="GeneID:947074" CDS complement(1861702..1861974) /gene="yeaC" /locus_tag="b1777" /gene_synonym="ECK1775; JW1766" /codon_start=1 /transl_table=11 /product="DUF1315 family protein" /protein_id="NP_416291.4" /db_xref="GI:90111329" /db_xref="ASAP:ABE-0005914" /db_xref="UniProtKB/Swiss-Prot:P76231" /db_xref="EcoGene:EG13489" /db_xref="GeneID:947074" /translation="MNLDDIINSMMPEVYQRLSTAVELGKWPDGVALTEEQKENCLQL VMLWQARHNIEAQHMTIDTNGQMVMKSKQQLKEDFGISAKPIAMFK" gene complement(1862016..1862429) /gene="msrB" /locus_tag="b1778" /gene_synonym="ECK1776; JW1767; yeaA" /db_xref="EcoGene:EG12394" /db_xref="GeneID:947188" CDS complement(1862016..1862429) /gene="msrB" /locus_tag="b1778" /gene_synonym="ECK1776; JW1767; yeaA" /EC_number="1.8.4.12" /codon_start=1 /transl_table=11 /product="methionine sulfoxide reductase B" /protein_id="NP_416292.1" /db_xref="GI:16129732" /db_xref="ASAP:ABE-0005916" /db_xref="UniProtKB/Swiss-Prot:P0A746" /db_xref="EcoGene:EG12394" /db_xref="GeneID:947188" /translation="MANKPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVY HCLICDAPLFHSQTKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHL GHVFPDGPQPTGERYCVNSASLRFTDGENGEEING" gene 1862771..1863766 /gene="gapA" /locus_tag="b1779" /gene_synonym="ECK1777; JW1768" /db_xref="EcoGene:EG10367" /db_xref="GeneID:947679" CDS 1862771..1863766 /gene="gapA" /locus_tag="b1779" /gene_synonym="ECK1777; JW1768" /EC_number="1.2.1.12" /function="enzyme; Energy metabolism, carbon: Glycolysis" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006094 - gluconeogenesis; GO:0006096 - glycolysis; GO:0008615 - pyridoxine biosynthetic process" /codon_start=1 /transl_table=11 /product="glyceraldehyde-3-phosphate dehydrogenase A" /protein_id="NP_416293.1" /db_xref="GI:16129733" /db_xref="ASAP:ABE-0005920" /db_xref="UniProtKB/Swiss-Prot:P0A9B2" /db_xref="EcoGene:EG10367" /db_xref="GeneID:947679" /translation="MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYM LKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLT DETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAK VINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKV LPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTE DDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK" gene 1863850..1864734 /gene="yeaD" /locus_tag="b1780" /gene_synonym="ECK1778; JW1769; yzzQ" /db_xref="EcoGene:EG12679" /db_xref="GeneID:946572" CDS 1863850..1864734 /gene="yeaD" /locus_tag="b1780" /gene_synonym="ECK1778; JW1769; yzzQ" /function="putative enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /experiment="N-terminus verified by Edman degradation: PMID 9298646" /codon_start=1 /transl_table=11 /product="D-hexose-6-phosphate epimerase-like protein" /protein_id="NP_416294.4" /db_xref="GI:90111330" /db_xref="ASAP:ABE-0005923" /db_xref="UniProtKB/Swiss-Prot:P39173" /db_xref="EcoGene:EG12679" /db_xref="GeneID:946572" /translation="MIKKIFALPVIEQISPVLSRRKLDELDLIVVDHPQVKASFALQG AHLLSWKPAGEEEVLWLSNNTPFKNGVAIRGGVPVCWPWFGPAAQQGLPAHGFARNLP WTLKSHHEDADGVALTFELTQSEETKKFWPHDFTLLAHFRVGKTCEIDLESHGEFETT SALHTYFNVGDIAKVSVSGLGDRFIDKVNDAKENVLTDGIQTFPDRTDRVYLNPQDCS VINDEALNRIIAVGHQHHLNVVGWNPGPALSISMGDMPDDGYKTFVCVETAYASETQK VTKEKPAHLAQSIRVAKR" repeat_region 1864753..1864773 /note="REP133 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1864782..1865636) /gene="yeaE" /locus_tag="b1781" /gene_synonym="ECK1779; JW1770" /db_xref="EcoGene:EG13491" /db_xref="GeneID:946302" CDS complement(1864782..1865636) /gene="yeaE" /locus_tag="b1781" /gene_synonym="ECK1779; JW1770" /function="enzyme; Degradation of small molecules: Carbon compounds" /note="putative an aldehyde reductase" /codon_start=1 /transl_table=11 /product="aldo-keto reductase, methylglyoxal to acetol, NADPH-dependent" /protein_id="NP_416295.1" /db_xref="GI:16129735" /db_xref="ASAP:ABE-0005925" /db_xref="UniProtKB/Swiss-Prot:P76234" /db_xref="EcoGene:EG13491" /db_xref="GeneID:946302" /translation="MQQKMIQFSGDVSLPAVGQGTWYMGEDASQRKTEVAALRAGIEL GLTLIDTAEMYADGGAEKVVGEALTGLREKVFLVSKVYPWNAGGQKAINACEASLRRL NTDYLDLYLLHWSGSFAFEETVAAMEKLIAQGKIRRWGVSNLDYADMQELWQLPGGNQ CATNQVLYHLGSRGIEYDLLPWCQQQQMPVMAYSPLAQAGRLRNGLLKNAVVNEIAHA HNISAAQVLLAWVISHQGVMAIPKAATIAHVQQNAAVLEVELSSAELAMLDKAYPAPK GKTALDMV" gene complement(1865726..1866472) /gene="mipA" /locus_tag="b1782" /gene_synonym="ECK1780; JW1771; yeaF" /db_xref="EcoGene:EG13492" /db_xref="GeneID:946301" CDS complement(1865726..1866472) /gene="mipA" /locus_tag="b1782" /gene_synonym="ECK1780; JW1771; yeaF" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /codon_start=1 /transl_table=11 /product="scaffolding protein for murein synthesizing machinery" /protein_id="NP_416296.1" /db_xref="GI:16129736" /db_xref="ASAP:ABE-0005928" /db_xref="UniProtKB/Swiss-Prot:P0A908" /db_xref="EcoGene:EG13492" /db_xref="GeneID:946301" /translation="MTKLKLLALGVLIATSAGVAHAEGKFSLGAGVGVVEHPYKDYDT DVYPVPVINYEGDNFWFRGLGGGYYLWNDATDKLSITAYWSPLYFKAKDSGDHQMRHL DDRKSTMMAGLSYAHFTQYGYLRTTLAGDTLDNSNGIVWDMAWLYRYTNGGLTVTPGI GVQWNSENQNEYYYGVSRKESARSGLRGYNPNDSWSPYLELSASYNFLGDWSVYGTAR YTRLSDEVTDSPMVDKSWTGLISTGITYKF" gene 1866908..1868842 /gene="yeaG" /locus_tag="b1783" /gene_synonym="ECK1781; JW1772" /db_xref="EcoGene:EG13493" /db_xref="GeneID:946297" CDS 1866908..1868842 /gene="yeaG" /locus_tag="b1783" /gene_synonym="ECK1781; JW1772" /codon_start=1 /transl_table=11 /product="protein kinase, endogenous substrate unidentified; autokinase" /protein_id="NP_416297.1" /db_xref="GI:16129737" /db_xref="ASAP:ABE-0005935" /db_xref="UniProtKB/Swiss-Prot:P0ACY3" /db_xref="EcoGene:EG13493" /db_xref="GeneID:946297" /translation="MNIFDHYRQRYEAAKDEEFTLQEFLTTCRQDRSAYANAAERLLM AIGEPVMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEK KQILYLLGPVGGGKSSLAERLKSLMQLVPIYVLSANGERSPVNDHPFCLFNPQEDAQI LEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILQQIAIAKTEPGDEN NQDISALVGKVDIRKLEHYAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLL TATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLR ISEEIKIYEKLLNHSELTHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGES LKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHVEVAANPVHLFYVL EQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVT YADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARAN NSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVISFNAKTSTDEQKKHDDFVDRMMEKG YTRKQVRLLCEWYLRVRKSS" repeat_region 1868892..1868930 /note="REP134 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 1868955..1870238 /gene="yeaH" /locus_tag="b1784" /gene_synonym="ECK1782; JW1773" /db_xref="EcoGene:EG13494" /db_xref="GeneID:946296" CDS 1868955..1870238 /gene="yeaH" /locus_tag="b1784" /gene_synonym="ECK1782; JW1773" /codon_start=1 /transl_table=11 /product="UPF0229 family protein" /protein_id="NP_416298.1" /db_xref="GI:16129738" /db_xref="ASAP:ABE-0005938" /db_xref="UniProtKB/Swiss-Prot:P76235" /db_xref="EcoGene:EG13494" /db_xref="GeneID:946296" /translation="MTWFIDRRLNGKNKSMVNRQRFLRRYKAQIKQSISEAINKRSVT DVDSGESVSIPTEDISEPMFHQGRGGLRHRVHPGNDHFVQNDRIERPQGGGGGSGSGQ GQASQDGEGQDEFVFQISKDEYLDLLFEDLALPNLKQNQQRQLTEYKTHRAGYTANGV PANISVVRSLQNSLARRTAMTAGKRRELHALEENLAIISNSEPAQLLEEERLRKEIAE LRAKIERVPFIDTFDLRYKNYEKRPDPSSQAVMFCLMDVSGSMDQSTKDMAKRFYILL YLFLSRTYKNVEVVYIRHHTQAKEVDEHEFFYSQETGGTIVSSALKLMDEVVKERYNP AQWNIYAAQASDGDNWADDSPLCHEILAKKLLPVVRYYSYIEITRRAHQTLWREYEHL QSTFDNFAMQHIRDQDDIYPVFRELFHKQNATAKG" gene 1870385..1871860 /gene="yeaI" /locus_tag="b1785" /gene_synonym="ECK1783; JW1774" /db_xref="EcoGene:EG13495" /db_xref="GeneID:946366" CDS 1870385..1871860 /gene="yeaI" /locus_tag="b1785" /gene_synonym="ECK1783; JW1774" /codon_start=1 /transl_table=11 /product="putative membrane-anchored diguanylate cyclase" /protein_id="NP_416299.1" /db_xref="GI:16129739" /db_xref="ASAP:ABE-0005941" /db_xref="UniProtKB/Swiss-Prot:P76236" /db_xref="EcoGene:EG13495" /db_xref="GeneID:946366" /translation="MIQSTRISMGLFFKYFLSLTKIDPGQNYISLPSIKSSTHIALLF MVSMGTQKLKAQSFFIFSLLLTLILFCITTLYNENTNVKLIPQMNYLMVVVALFFLNA VIFLFMLMKYFTNKQILPTLILSLAFLSGLIYLVETIVIIHKPINGSTLIQTKSNDVS IFYIFRQLSFICLTSLALFCYGKDNILDNNKKKTGILLLALIPFLVFPLLAHNLSSYN ADYSLYVVDYCPDNHTATWGINYTKILVCLWAFLLFFIIMRTRLASELWPLIALLCLA SLCCNLLLLTLDEYNYTIWYISRGIEVSSKLFVVSFLIYNIFQELQLSSKLAVHDVLT NIYNRRYFFNSVESLLSRPVVKDFCVMLVDINQFKRINAQWGHRVGDKVLVSIVDIIQ QSIRPDDILARLEGEVFGLLFTELNSAQAKIIAERMRKNVELLTGFSNRYDVPEQMTI SIGTVFSTGDTRNISLVMTEADKALREAKSEGGNKVIIHHI" gene 1872041..1873531 /gene="yeaJ" /locus_tag="b1786" /gene_synonym="ECK1784; JW5291" /db_xref="EcoGene:EG13496" /db_xref="GeneID:946290" CDS 1872041..1873531 /gene="yeaJ" /locus_tag="b1786" /gene_synonym="ECK1784; JW5291" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase" /protein_id="NP_416300.2" /db_xref="GI:90111331" /db_xref="ASAP:ABE-0005943" /db_xref="UniProtKB/Swiss-Prot:P76237" /db_xref="EcoGene:EG13496" /db_xref="GeneID:946290" /translation="MKLHHRMLRHFIAASVIVLTSSFLIFELVASDRAMSAYLRYIVQ KADSSFLYDKYQNQSIAAHVMRALAAEQSEVSPEQRRAICEAFESANNTHGLNLTAHK YPGLRGTLQTASTDCDTIVEAAALLPAFDQAVEGNRHQDDYGSGLGMAEEKFHYYLDL NDRYVYFYEPVNVEYFAMNNWSFLQSGSIGIDRKDIEKVFTGRTVLSSIYQDQRTKQN VMSLLTPVYVAGQLKGIVLLDINKNNLRNIFYTHDRPLLWRFLNVTLTDTDSGRDIII NQSEDNLFQYVSYVHDLPGGIRVSLSIDILYFITSSWKSVLFWILTALILLNMVRMHF RLYQNVSRENISDAMTGLYNRKILTPELEQRLQKLVQSGSSVMFIAIDMDKLKQINDT LGHQEGDLAITLLAQAIKQSIRKSDYAIRLGGDEFCIILVDSTPQIAAQLPERIEKRL QHIAPQKEIGFSSGIYAMKENDTLHDAYKASDERLYVNKQNKNSRS" gene 1873574..1874077 /gene="yeaK" /locus_tag="b1787" /gene_synonym="ECK1785; JW1776" /db_xref="EcoGene:EG13497" /db_xref="GeneID:946303" CDS 1873574..1874077 /gene="yeaK" /locus_tag="b1787" /gene_synonym="ECK1785; JW1776" /codon_start=1 /transl_table=11 /product="aminoacyl-tRNA editing domain protein" /protein_id="NP_416301.1" /db_xref="GI:16129741" /db_xref="ASAP:ABE-0005945" /db_xref="UniProtKB/Swiss-Prot:P64483" /db_xref="EcoGene:EG13497" /db_xref="GeneID:946303" /translation="MTEMAKGSVTHQRLIALLSQEGADFRVVTHEAVGKCEAVSEIRG TALGQGAKALVCKVKGNGVNQHVLAILAADQQADLSQLASHIGGLRASLASPAEVDEL TGCVFGAIPPFSFHPKLKLVADPLLFERFDEIAFNAGMLDKSVILKTADYLRIAQPEL VNFRRTA" gene complement(1874078..1874182) /gene="yoaI" /locus_tag="b1788" /gene_synonym="ECK4472" /db_xref="EcoGene:EG14417" /db_xref="GeneID:946294" CDS complement(1874078..1874182) /gene="yoaI" /locus_tag="b1788" /gene_synonym="ECK4472" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416302.2" /db_xref="GI:90111332" /db_xref="ASAP:ABE-0005947" /db_xref="UniProtKB/Swiss-Prot:P76239" /db_xref="EcoGene:EG14417" /db_xref="GeneID:946294" /translation="MNDQMFVETLIITSSFFAIAVVLVLSVLLIERTG" gene 1874352..1874798 /gene="yeaL" /locus_tag="b1789" /gene_synonym="ECK1787; JW1778" /db_xref="EcoGene:EG13498" /db_xref="GeneID:946307" CDS 1874352..1874798 /gene="yeaL" /locus_tag="b1789" /gene_synonym="ECK1787; JW1778" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="UPF0756 family putative inner membrane protein" /protein_id="NP_416303.1" /db_xref="GI:16129743" /db_xref="ASAP:ABE-0005954" /db_xref="UniProtKB/Swiss-Prot:P0ACY6" /db_xref="EcoGene:EG13498" /db_xref="GeneID:946307" /translation="MFDVTLLILLGLAALGFISHNTTVAVSILVLIIVRVTPLSTFFP WIEKQGLSIGIIILTIGVMAPIASGTLPPSTLIHSFLNWKSLVAIAVGVIVSWLGGRG VTLMGSQPQLVAGLLVGTVLGVALFRGVPVGPLIAAGLVSLIVGKQ" gene complement(1874755..1875576) /gene="yeaM" /locus_tag="b1790" /gene_synonym="ECK1788; JW1779" /db_xref="EcoGene:EG13499" /db_xref="GeneID:946590" CDS complement(1874755..1875576) /gene="yeaM" /locus_tag="b1790" /gene_synonym="ECK1788; JW1779" /function="putative regulator; Not classified" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent; GO:0006350 - transcription" /note="putative ARAC-type regulatory protein" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator" /protein_id="NP_416304.1" /db_xref="GI:16129744" /db_xref="ASAP:ABE-0005956" /db_xref="UniProtKB/Swiss-Prot:P76241" /db_xref="EcoGene:EG13499" /db_xref="GeneID:946590" /translation="MMHRLNLNGYEPDRHHEAAVAFCIHAGTDELTSPVHQHRKGQLI LALHGAITCTVENALWMVPPQYAVWIPGGVEHSNQVTANAELCFLFIEPSAVTMPTTC CTLKISPLCRELILTLANRTTTQRAEPMTRRLIQVLFDELPQQPQQQLHLPVSSHPKI RTMVEMMAKGPVEWGALGQWAGFFAMSERNLARLIVKETGLSFRQWRQQLQLIMALQG LVKGDTVQKVAHTLGYDSTTAFITMFKKGLGQTPGRYIARLTTVSPQSAKPDPRQ" gene 1875673..1876854 /gene="yeaN" /locus_tag="b1791" /gene_synonym="ECK1789; JW1780" /db_xref="EcoGene:EG13500" /db_xref="GeneID:946309" CDS 1875673..1876854 /gene="yeaN" /locus_tag="b1791" /gene_synonym="ECK1789; JW1780" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042886 - amide transport" /note="putative amino acid/amine transport protein" /codon_start=1 /transl_table=11 /product="putative MFS transporter, inner membrane protein" /protein_id="NP_416305.1" /db_xref="GI:16129745" /db_xref="ASAP:ABE-0005962" /db_xref="UniProtKB/Swiss-Prot:P76242" /db_xref="EcoGene:EG13500" /db_xref="GeneID:946309" /translation="MTCSTSLSGKNRIVLIAGILMIATTLRVTFTGAAPLLDTIRSAY SLTTAQTGLLTTLPLLAFALISPLAAPVARRFGMERSLFAALLLICAGIAIRSLPSPY LLFGGTAVIGGGIALGNVLLPGLIKRDFPHSVARLTGAYSLTMGAAAALGSAMVVPLA LNGFGWQGALLMLMCFPLLALFLWLPQWRSQQHANLSTSRALHTRGIWRSPLAWQVTL FLGINSLVYYVIIGWLPAILISHGYSEAQAGSLHGLLQLATAAPGLLIPLFLHHVKDQ RGIAAFVALMCAVGAVGLCFMPAHAITWTLLFGFGSGATMILGLTFIGLRASSAHQAA ALSGMAQSVGYLLAACGPPLMGKIHDANGNWSVPLMGVAILSLLMAIFGLCAGRDKEI R" gene 1876909..1877256 /gene="yeaO" /locus_tag="b1792" /gene_synonym="ECK1790; JW1781" /db_xref="EcoGene:EG13501" /db_xref="GeneID:945675" CDS 1876909..1877256 /gene="yeaO" /locus_tag="b1792" /gene_synonym="ECK1790; JW1781" /codon_start=1 /transl_table=11 /product="DUF488 family protein" /protein_id="NP_416306.2" /db_xref="GI:90111333" /db_xref="ASAP:ABE-0005964" /db_xref="UniProtKB/Swiss-Prot:P76243" /db_xref="EcoGene:EG13501" /db_xref="GeneID:945675" /translation="MNIQCKRVYDPAEQSDGYRILVDRLWPRGIKKTDLALDEWDKEI TPSTELRKAFHGEVVDYATFREQYLAELAQHEQEGKRLADIAKKQPLTLLYSAKNTTQ NHALVLADWLRSL" gene complement(1877278..1877532) /gene="yoaF" /locus_tag="b1793" /gene_synonym="ECK1791; JW1782" /db_xref="EcoGene:EG14304" /db_xref="GeneID:946310" CDS complement(1877278..1877532) /gene="yoaF" /locus_tag="b1793" /gene_synonym="ECK1791; JW1782" /codon_start=1 /transl_table=11 /product="DUF333 family outer membrane lipoprotein" /protein_id="NP_416307.1" /db_xref="GI:16129747" /db_xref="ASAP:ABE-0005966" /db_xref="UniProtKB/Swiss-Prot:P64493" /db_xref="EcoGene:EG14304" /db_xref="GeneID:946310" /translation="MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQK GGTLIPVQTAQGVSNNCKLPGGETIDEWALWRRDHPAGEK" gene 1877715..1878740 /gene="yeaP" /locus_tag="b1794" /gene_synonym="ECK1792; JW5292" /db_xref="EcoGene:EG13502" /db_xref="GeneID:948969" CDS 1877715..1878740 /gene="yeaP" /locus_tag="b1794" /gene_synonym="ECK1792; JW5292" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="NP_416308.4" /db_xref="GI:90111334" /db_xref="ASAP:ABE-0005972" /db_xref="UniProtKB/Swiss-Prot:P76245" /db_xref="EcoGene:EG13502" /db_xref="GeneID:948969" /translation="MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKV DVEARLQHIMFARNSQKMYIPENFTVSWDYSLCKRAIDENCFFSDEVPDRWGDCIAAR NLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALV EQLREANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKL INDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERI QQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFV AHPALHS" gene 1878773..1878871 /gene="yoaK" /locus_tag="b4676" /gene_synonym="ECK4491" /db_xref="EcoGene:EG14481" /db_xref="GeneID:7751647" CDS 1878773..1878871 /gene="yoaK" /locus_tag="b4676" /gene_synonym="ECK4491" /codon_start=1 /transl_table=11 /product="inner membrane-associated protein" /protein_id="YP_002791242.1" /db_xref="GI:226524722" /db_xref="UniProtKB/Swiss-Prot:C1P602" /db_xref="EcoGene:EG14481" /db_xref="GeneID:7751647" /translation="MRIGIIFPVVIFITAVVFLAWFFIGGYAAPGA" gene 1878874..1878948 /gene="yoaJ" /locus_tag="b4675" /gene_synonym="ECK4490" /db_xref="EcoGene:EG14480" /db_xref="GeneID:7751648" CDS 1878874..1878948 /gene="yoaJ" /locus_tag="b4675" /gene_synonym="ECK4490" /codon_start=1 /transl_table=11 /product="inner membrane-associated protein" /protein_id="YP_002791243.1" /db_xref="GI:226524723" /db_xref="UniProtKB/Swiss-Prot:C1P603" /db_xref="EcoGene:EG14480" /db_xref="GeneID:7751648" /translation="MKKTTIIMMGVAIIVVLGTELGWW" gene complement(1879007..1879255) /gene="yeaQ" /locus_tag="b1795" /gene_synonym="ECK1793; JW1784" /db_xref="EcoGene:EG13503" /db_xref="GeneID:946311" CDS complement(1879007..1879255) /gene="yeaQ" /locus_tag="b1795" /gene_synonym="ECK1793; JW1784" /codon_start=1 /transl_table=11 /product="UPF0410 family protein" /protein_id="NP_416309.1" /db_xref="GI:16129749" /db_xref="ASAP:ABE-0005974" /db_xref="UniProtKB/Swiss-Prot:P64485" /db_xref="EcoGene:EG13503" /db_xref="GeneID:946311" /translation="MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTILLGIVGAVVGG WISTLFGFGKVDGFNFGSFVVAVIGAIVVLFIYRKIKS" gene complement(1879403..1879585) /gene="yoaG" /locus_tag="b1796" /gene_synonym="ECK1794; JW1785" /db_xref="EcoGene:EG14305" /db_xref="GeneID:946314" CDS complement(1879403..1879585) /gene="yoaG" /locus_tag="b1796" /gene_synonym="ECK1794; JW1785" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416310.1" /db_xref="GI:16129750" /db_xref="ASAP:ABE-0005976" /db_xref="UniProtKB/Swiss-Prot:P64496" /db_xref="EcoGene:EG14305" /db_xref="GeneID:946314" /translation="MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVN TVRSYDTENEHDVCGW" gene complement(1879589..1879948) /gene="yeaR" /locus_tag="b1797" /gene_synonym="ECK1795; JW1786" /db_xref="EcoGene:EG13504" /db_xref="GeneID:946317" CDS complement(1879589..1879948) /gene="yeaR" /locus_tag="b1797" /gene_synonym="ECK1795; JW1786" /GO_process="GO:0006805 - xenobiotic metabolic process" /codon_start=1 /transl_table=11 /product="DUF1971 family protein, nitrate-inducible" /protein_id="NP_416311.1" /db_xref="GI:16129751" /db_xref="ASAP:ABE-0005979" /db_xref="UniProtKB/Swiss-Prot:P64488" /db_xref="EcoGene:EG13504" /db_xref="GeneID:946317" /translation="MLQIPQNYIHTRSTPFWNKQTAPAGIFERHLDKGTRPGVYPRLS VMHGAVKYLGYADEHSAEPDQVILIEAGQFAVFPPEKWHNIEAMTDDTYFNIDFFVAP EVLMEGAQQRKVIHNGK" gene complement(1880121..1880759) /gene="leuE" /locus_tag="b1798" /gene_synonym="ECK1796; JW1787; yeaS" /db_xref="EcoGene:EG13505" /db_xref="GeneID:946157" CDS complement(1880121..1880759) /gene="leuE" /locus_tag="b1798" /gene_synonym="ECK1796; JW1787; yeaS" /codon_start=1 /transl_table=11 /product="leucine efflux protein" /protein_id="NP_416312.1" /db_xref="GI:16129752" /db_xref="ASAP:ABE-0005984" /db_xref="UniProtKB/Swiss-Prot:P76249" /db_xref="EcoGene:EG13505" /db_xref="GeneID:946157" /translation="MFAEYGVLNYWTYLVGAIFIVLVPGPNTLFVLKNSVSSGMKGGY LAACGVFIGDAVLMFLAWAGVATLIKTTPILFNIVRYLGAFYLLYLGSKILYATLKGK NSEAKSDEPQYGAIFKRALILSLTNPKAILFYVSFFVQFIDVNAPHTGISFFILAATL ELVSFCYLSFLIISGAFVTQYIRTKKKLAKVGNSLIGLMFVGFAARLATLQS" gene complement(1880886..1881809) /gene="dmlR" /locus_tag="b1799" /gene_synonym="ECK1797; JW1788; yeaT" /db_xref="EcoGene:EG13506" /db_xref="GeneID:946316" CDS complement(1880886..1881809) /gene="dmlR" /locus_tag="b1799" /gene_synonym="ECK1797; JW1788; yeaT" /function="regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="transcriptional activator of dmlA" /protein_id="NP_416313.4" /db_xref="GI:90111335" /db_xref="ASAP:ABE-0005987" /db_xref="UniProtKB/Swiss-Prot:P76250" /db_xref="EcoGene:EG13506" /db_xref="GeneID:946316" /translation="MNNLPLLNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLE QTLNVVLLHRTTRRVTITEEGERIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISS FGFGRQVVAPALLALAKAYPQLELRFDVEDRLVDLVNEGVDLDIRIGDDIAPNLIARK LATNYRILCASPEFIAQHGAPKHLTDLSALPCLVIKERDHPFGVWQLRNKEGPHAIKV TGPLSSNHGEIVHQWCLDGQGIALRSWWDVSENIASGHLVQVLPEYYQPANVWAVYVS RLATSAKVRITVEFLRQYFAEHYPNFSLEHA" gene 1881912..1882997 /gene="dmlA" /locus_tag="b1800" /gene_synonym="ECK1798; JW1789; yeaU" /db_xref="EcoGene:EG13507" /db_xref="GeneID:946319" CDS 1881912..1882997 /gene="dmlA" /locus_tag="b1800" /gene_synonym="ECK1798; JW1789; yeaU" /function="enzyme; Not classified" /GO_process="GO:0006113 - fermentation" /note="putative tartrate dehydrogenase" /codon_start=1 /transl_table=11 /product="D-malate oxidase, NAD-dependent; putative tartrate dehydrogenase" /protein_id="NP_416314.1" /db_xref="GI:16129754" /db_xref="ASAP:ABE-0005991" /db_xref="UniProtKB/Swiss-Prot:P76251" /db_xref="EcoGene:EG13507" /db_xref="GeneID:946319" /translation="MMKTMRIAAIPGDGIGKEVLPEGIRVLQAAAERWGFALSFEQME WASCEYYSHHGKMMPDDWHEQLSRFDAIYFGAVGWPDTVPDHISLWGSLLKFRREFDQ YVNLRPVRLFPGVPCPLAGKQPGDIDFYVVRENTEGEYSSLGGRVNEGTEHEVVIQES VFTRRGVDRILRYAFELAQSRPRKTLTSATKSNGLAISMPYWDERVEAMAENYPEIRW DKQHIDILCARFVMQPERFDVVVASNLFGDILSDLGPACTGTIGIAPSANLNPERTFP SLFEPVHGSAPDIYGKNIANPIATIWAGAMMLDFLGNGDERFQQAHNGILAAIEEVIA HGPKTPDMKGNATTPQVADAICKIILR" gene 1883188..1884633 /gene="yeaV" /locus_tag="b1801" /gene_synonym="ECK1799; JW5293" /db_xref="EcoGene:EG13508" /db_xref="GeneID:947326" CDS 1883188..1884633 /gene="yeaV" /locus_tag="b1801" /gene_synonym="ECK1799; JW5293" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="NP_416315.1" /db_xref="GI:16129755" /db_xref="ASAP:ABE-0005995" /db_xref="UniProtKB/Swiss-Prot:P0ABD1" /db_xref="EcoGene:EG13508" /db_xref="GeneID:947326" /translation="MVLLAMGLVIYLATSKYGNIRLGEGKPEYSTLSWLFMFICAGLG SSTLYWGVAEWAYYYQTPGLNIAPRSQQALEFSVPYSFFHWGISAWATYTLASLIMAY HFHVRKNKGLSLSGIIAAITGVRPQGPWGKLVDLMFLIATVGALTISLVVTAATFTRG LSALTGLPDNFTVQAFVILLSGGIFCLSSWIGINNGLQRLSKMVGWGAFLLPLLVLIV GPTEFITNSIINAIGLTTQNFLQMSLFTDPLGDGSFTRNWTVFYWLWWISYTPGVAMF VTRVSRGRKIKEVIWGLILGSTVGCWFFFGVMESYAIHQFINGVINVPQVLETLGGET AVQQVLMSLPAGKLFLAAYLGVMIIFLASHMDAVAYTMAATSTRNLQEGDDPDRGLRL FWCVVITLIPLSILFTGASLETMKTTVVLTALPFLVILLVKVGGFIRWLKQDYADIPA HQVEHYLPQTPVEALEKTPVLPAGTVFKGDN" gene 1884665..1885789 /gene="yeaW" /locus_tag="b1802" /gene_synonym="ECK1800; JW5294" /db_xref="EcoGene:EG13509" /db_xref="GeneID:946325" CDS 1884665..1885789 /gene="yeaW" /locus_tag="b1802" /gene_synonym="ECK1800; JW5294" /codon_start=1 /transl_table=11 /product="putative YeaWX dioxygenase alpha subunit; 2Fe-2S cluster" /protein_id="NP_416316.1" /db_xref="GI:16129756" /db_xref="ASAP:ABE-0005997" /db_xref="UniProtKB/Swiss-Prot:P0ABR7" /db_xref="EcoGene:EG13509" /db_xref="GeneID:946325" /translation="MSNLSPDFVLPENFCANPQEAWTIPARFYTDQNAFEHEKENVFA KSWICVAHSSELANANDYVTREIIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSGEGK AKNVITCPYHAWAFKLDGNLAHARNCENVANFDSDKAQLVPVRLEEYAGFVFINMDPN ATSVEDQLPGLGAKVLEACPEVHDLKLAARFTTRTPANWKNIVDNYLECYHCGPAHPG FSDSVQVDRYWHTMHGNWTLQYGFAKPSEQSFKFEEGTDAAFHGFWLWPCTMLNVTPI KGMMTVIYEFPVDSETTLQNYDIYFTNEELTDEQKSLIEWYRDVFRPEDLRLVESVQK GLKSRGYRGQGRIMADSSGSGISEHGIAHFHNLLAQVFKD" gene 1885845..1886810 /gene="yeaX" /locus_tag="b1803" /gene_synonym="ECK1801; JW1792" /db_xref="EcoGene:EG13510" /db_xref="GeneID:946329" CDS 1885845..1886810 /gene="yeaX" /locus_tag="b1803" /gene_synonym="ECK1801; JW1792" /function="putative enzyme; Not classified" /note="putative diogenase beta subunit" /codon_start=1 /transl_table=11 /product="putative YeaWX dioxygenase beta subunit, reductase component" /protein_id="NP_416317.1" /db_xref="GI:16129757" /db_xref="ASAP:ABE-0006000" /db_xref="UniProtKB/Swiss-Prot:P76254" /db_xref="EcoGene:EG13510" /db_xref="GeneID:946329" /translation="MSDYQMFEVQVSQVEPLTEQVKRFTLVATDGKPLPAFTGGSHVI VQMSDGDNQYSNAYSLLSSPHDTSCYQIAVRLEENSRGGSRFLHQQVKVGDRLTISTP NNLFALIPSARKHLFIAGGIGITPFLSHMAELQHSDVDWQLHYCSRNPESCAFRDELV QHPQAEKVHLHHSSTGTRLELARLLADIEPGTHVYTCGPEALIEAVRSEAARLDIAAD TLHFEQFAIEDKTGDAFTLVLARSGKEFVVPEEMTILQVIENNKAAKVECLCREGVCG TCETAILEGEADHRDQYFSDEERASQQSMLICCSRAKGKRLVLDL" gene complement(1886864..1887991) /gene="rnd" /locus_tag="b1804" /gene_synonym="ECK1802; JW1793" /db_xref="EcoGene:EG10858" /db_xref="GeneID:946328" CDS complement(1886864..1887991) /gene="rnd" /locus_tag="b1804" /gene_synonym="ECK1802; JW1793" /EC_number="3.1.26.3" /function="enzyme; Degradation of RNA" /experiment="N-terminus verified by Edman degradation: PMID 3041371" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006401 - RNA catabolic process; GO:0009451 - RNA modification" /note="RNase D, processes tRNA precursor" /codon_start=1 /transl_table=11 /product="ribonuclease D" /protein_id="NP_416318.1" /db_xref="GI:16129758" /db_xref="ASAP:ABE-0006003" /db_xref="UniProtKB/Swiss-Prot:P09155" /db_xref="EcoGene:EG10858" /db_xref="GeneID:946328" /translation="MNYQMITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLI QLFDGEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLID TQILAAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLL PITAKLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQ LLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLL ALVEKAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQI NQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLLQEYPQ" gene complement(1888061..1889746) /gene="fadD" /locus_tag="b1805" /gene_synonym="ECK1803; JW1794; oldD" /db_xref="EcoGene:EG11530" /db_xref="GeneID:946327" CDS complement(1888061..1889746) /gene="fadD" /locus_tag="b1805" /gene_synonym="ECK1803; JW1794; oldD" /EC_number="6.2.1.3" /function="enzyme; Degradation of small molecules: Fatty acids" /experiment="N-terminus verified by Edman degradation: PMID 1460045" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0019395 - fatty acid oxidation; GO:0008654 - phospholipid biosynthetic process" /codon_start=1 /transl_table=11 /product="acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase)" /protein_id="NP_416319.1" /db_xref="GI:16129759" /db_xref="ASAP:ABE-0006005" /db_xref="UniProtKB/Swiss-Prot:P69451" /db_xref="EcoGene:EG11530" /db_xref="GeneID:946327" /translation="MKKVWLNRYPADVPTEINPDRYQSLVDMFEQSVARYADQPAFVN MGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQYPVALFGILRAGMIVV NVNPLYTPRELEHQLNDSGASAIVIVSNFAHTLEKVVDKTAVQHVILTRMGDQLSTAK GTVVNFVVKYIKRLVPKYHLPDAISFRSALHNGYRMQYVKPELVPEDLAFLQYTGGTT GVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIELG GQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGG MPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLV DDDDNEVPPGQPGELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRI VDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPSL TEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNKA" gene complement(1889951..1890532) /gene="yeaY" /locus_tag="b1806" /gene_synonym="ECK1804; JW1795" /db_xref="EcoGene:EG13511" /db_xref="GeneID:946312" CDS complement(1889951..1890532) /gene="yeaY" /locus_tag="b1806" /gene_synonym="ECK1804; JW1795" /function="membrane; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative outer membrane protein" /codon_start=1 /transl_table=11 /product="Slp family lipoprotein, RpoE-regulated" /protein_id="NP_416320.1" /db_xref="GI:16129760" /db_xref="ASAP:ABE-0006011" /db_xref="UniProtKB/Swiss-Prot:P0AA91" /db_xref="EcoGene:EG13511" /db_xref="GeneID:946312" /translation="MAVQKNVIKGILAGTFALMLSGCVTVPDAIKGSSPTPQQDLVRV MSAPQLYVGQEARFGGKVVAVQNQQGKTRLEIATVPLDSGARPTLGEPSRGRIYADVN GFLDPVDFRGQLVTVVGPITGAVDGKIGNTPYKFMVMQVTGYKRWHLTQQVIMPPQPI DPWFYGGRGWPYGYGGWGWYNPGPARVQTVVTE" gene complement(1890572..1891267) /gene="tsaB" /locus_tag="b1807" /gene_synonym="ECK1805; JW1796; rpf; yeaZ" /db_xref="EcoGene:EG13512" /db_xref="GeneID:946304" CDS complement(1890572..1891267) /gene="tsaB" /locus_tag="b1807" /gene_synonym="ECK1805; JW1796; rpf; yeaZ" /function="enzyme; tRNA modification" /codon_start=1 /transl_table=11 /product="tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; binding partner and protease for TsaD" /protein_id="NP_416321.1" /db_xref="GI:16129761" /db_xref="ASAP:ABE-0006013" /db_xref="UniProtKB/Swiss-Prot:P76256" /db_xref="EcoGene:EG13512" /db_xref="GeneID:946304" /translation="MRILAIDTATEACSVALWNDGTVNAHFELCPREHTQRILPMVQD ILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMAQGA WRKNGATRVLAAIDARMGEVYWAEYQRDENGIWHGEETEAVLKPEIVHERMQQLSGEW VTVGTGWQAWPDLGKESGLVLRDGEVLLPAAEDMLPIACQMFAEGKTVAVEHAEPVYL RNNVAWKKLPGKE" gene complement(1891325..1893235) /gene="yoaA" /locus_tag="b1808" /gene_synonym="ECK1806; JW1797" /db_xref="EcoGene:EG13513" /db_xref="GeneID:946305" CDS complement(1891325..1893235) /gene="yoaA" /locus_tag="b1808" /gene_synonym="ECK1806; JW1797" /function="putative enzyme; Not classified" /GO_component="GO:0005737 - cytoplasm" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="putative ATP-dependent helicase, DinG family" /protein_id="NP_416322.1" /db_xref="GI:16129762" /db_xref="ASAP:ABE-0006016" /db_xref="UniProtKB/Swiss-Prot:P76257" /db_xref="EcoGene:EG13513" /db_xref="GeneID:946305" /translation="MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVE AGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKG RSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPL VTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPE ADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLA QSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDA AFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSW IFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSAR QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA RAVRFLAIPSSR" gene 1893367..1893711 /gene="yoaB" /locus_tag="b1809" /gene_synonym="ECK1807; JW5295" /db_xref="EcoGene:EG13514" /db_xref="GeneID:946357" CDS 1893367..1893711 /gene="yoaB" /locus_tag="b1809" /gene_synonym="ECK1807; JW5295" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative reactive intermediate deaminase" /protein_id="NP_416323.4" /db_xref="GI:90111336" /db_xref="ASAP:ABE-0006020" /db_xref="UniProtKB/Swiss-Prot:P0AEB7" /db_xref="EcoGene:EG13514" /db_xref="GeneID:946357" /translation="MTIVRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLA QIDAVLEKQGSNKSSILDATIFLADKNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNP KYKVEIKIVAAV" gene 1894133..1894432 /gene="yoaC" /locus_tag="b1810" /gene_synonym="ECK1808; JW5296" /db_xref="EcoGene:EG13515" /db_xref="GeneID:946308" CDS 1894133..1894432 /gene="yoaC" /locus_tag="b1810" /gene_synonym="ECK1808; JW5296" /codon_start=1 /transl_table=11 /product="DUF1889 family protein" /protein_id="NP_416324.2" /db_xref="GI:226524724" /db_xref="ASAP:ABE-0006024" /db_xref="UniProtKB/Swiss-Prot:P64490" /db_xref="EcoGene:EG13515" /db_xref="GeneID:946308" /translation="MPAVIDKALDFIGAMDVSAPTPSSMNESTAKGIFKYLKELGVPA SAADITARADQEGWNPGFTEKMVGWAKKMETGERSVIKNPEYFSTYMQEELKALV" gene complement(1894552..1894731) /gene="yoaH" /locus_tag="b1811" /gene_synonym="ECK1809; JW1800" /db_xref="EcoGene:EG14306" /db_xref="GeneID:946346" CDS complement(1894552..1894731) /gene="yoaH" /locus_tag="b1811" /gene_synonym="ECK1809; JW1800" /codon_start=1 /transl_table=11 /product="UPF0181 family protein" /protein_id="NP_416325.1" /db_xref="GI:16129765" /db_xref="ASAP:ABE-0006026" /db_xref="UniProtKB/Swiss-Prot:P67338" /db_xref="EcoGene:EG14306" /db_xref="GeneID:946346" /translation="MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRAN HSGERIVARFEDEDE" gene 1894805..1896166 /gene="pabB" /locus_tag="b1812" /gene_synonym="ECK1810; JW1801" /db_xref="EcoGene:EG10683" /db_xref="GeneID:946337" CDS 1894805..1896166 /gene="pabB" /locus_tag="b1812" /gene_synonym="ECK1810; JW1801" /EC_number="2.6.1.85" /function="enzyme; Biosynthesis of cofactors, carriers: Folic acid" /GO_process="GO:0046656 - folic acid biosynthetic process" /note="p-aminobenzoate synthetase, component I" /codon_start=1 /transl_table=11 /product="aminodeoxychorismate synthase, subunit I" /protein_id="NP_416326.1" /db_xref="GI:16129766" /db_xref="ASAP:ABE-0006031" /db_xref="UniProtKB/Swiss-Prot:P05041" /db_xref="EcoGene:EG10683" /db_xref="GeneID:946337" /translation="MKTLSPAVITLLWRQDAAEFYFSRLSHLPWAMLLHSGYADHPYS RFDIVVAEPICTLTTFGKETVVSESEKRTTTTDDPLQVLQQVLDRADIRPTHNEDLPF QGGALGLFGYDLGRRFESLPEIAEQDIVLPDMAVGIYDWALIVDHQRHTVSLLSHNDV NARRAWLESQQFSPQEDFTLTSDWQSNMTREQYGEKFRQVQEYLHSGDCYQVNLAQRF HATYSGDEWQAFLQLNQANRAPFSAFLRLEQGAILSLSPERFILCDNSEIQTRPIKGT LPRLPDPQEDSKQAVKLANSAKDRAENLMIVDLMRNDIGRVAVAGSVKVPELFVVEPF PAVHHLVSTITAQLPEQLHASDLLRAAFPGGSITGAPKVRAMEIIDELEPQRRNAWCG SIGYLSFCGNMDTSITIRTLTAINGQIFCSAGGGIVADSQEEAEYQETFDKVNRILKQ LEK" gene 1896170..1896748 /gene="nudL" /locus_tag="b1813" /gene_synonym="ECK1811; JW1802; yeaB" /db_xref="EcoGene:EG12693" /db_xref="GeneID:946330" CDS 1896170..1896748 /gene="nudL" /locus_tag="b1813" /gene_synonym="ECK1811; JW1802; yeaB" /codon_start=1 /transl_table=11 /product="putative CoA pyrophosphohydrolase, weak 3-phosphohydroxypyruvate phosphatase" /protein_id="NP_416327.1" /db_xref="GI:16129767" /db_xref="ASAP:ABE-0006035" /db_xref="UniProtKB/Swiss-Prot:P43337" /db_xref="EcoGene:EG12693" /db_xref="GeneID:946330" /translation="MEYRSLTLDDFLSRFQLLRPQINRETLNHRQAAVLIPIVRRPQP GLLLTQRSIHLRKHAGQVAFPGGAVDDTDASAIAAALREAEEEVAIPPSAVEVIGVLP PVDSVTGYQVTPVVGIIPPDLPYRASEDEVSAVFEMPLAQALHLGRYHPLDIYRRGDS HRVWLSWYEQYFVWGMTAGIIRELALQIGVKP" gene 1896932..1898296 /gene="sdaA" /locus_tag="b1814" /gene_synonym="ECK1812; JW1803" /db_xref="EcoGene:EG10930" /db_xref="GeneID:946331" CDS 1896932..1898296 /gene="sdaA" /locus_tag="b1814" /gene_synonym="ECK1812; JW1803" /EC_number="4.3.1.17" /function="enzyme; Degradation of small molecules: Amino acids" /experiment="N-terminus verified by Edman degradation: PMID 8436113" /GO_process="GO:0009063 - cellular amino acid catabolic process" /note="L-serine deaminase" /codon_start=1 /transl_table=11 /product="L-serine dehydratase 1" /protein_id="NP_416328.1" /db_xref="GI:16129768" /db_xref="ASAP:ABE-0006039" /db_xref="UniProtKB/Swiss-Prot:P16095" /db_xref="EcoGene:EG10930" /db_xref="GeneID:946331" /translation="MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDSVTR VAVDVYGSLSLTGKGHHTDIAIIMGLAGNEPATVDIDSIPGFIRDVEERERLLLAQGR HEVDFPRDNGMRFHNGNLPLHENGMQIHAYNGDEVVYSKTYYSIGGGFIVDEEHFGQD AANEVSVPYPFKSATELLAYCNETGYSLSGLAMQNELALHSKKEIDEYFAHVWQTMQA CIDRGMNTEGVLPGPLRVPRRASALRRMLVSSDKLSNDPMNVIDWVNMFALAVNEENA AGGRVVTAPTNGACGIVPAVLAYYDHFIESVSPDIYTRYFMAAGAIGALYKMNASISG AEVGCQGEVGVACSMAAAGLAELLGGSPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPC IERNAIASVKAINAARMALRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIK VQCD" gene 1898427..1900025 /gene="yoaD" /locus_tag="b1815" /gene_synonym="adrB; ECK1813; JW1804" /db_xref="EcoGene:EG13516" /db_xref="GeneID:946336" CDS 1898427..1900025 /gene="yoaD" /locus_tag="b1815" /gene_synonym="adrB; ECK1813; JW1804" /codon_start=1 /transl_table=11 /product="putative membrane-anchored cyclic-di-GMP phosphodiesterase, regulator of cellulose production" /protein_id="NP_416329.4" /db_xref="GI:90111337" /db_xref="ASAP:ABE-0006043" /db_xref="UniProtKB/Swiss-Prot:P76261" /db_xref="EcoGene:EG13516" /db_xref="GeneID:946336" /translation="MQKAQRIIKTYRRNRMIVCTICALVTLASTLSVRFISQRNLNQQ RVVQFANHAVEELDKVLLPLQAGSEVLLPLIGLPCSVAHLPLRKQAAKLQTVRSIGLV QDGTLYCSSIFGYRNVPVVDILAELPAPQPLLRLTIDRALIKGSPVLIQWTPAAGSSN AGVMEMINIDLLTAMLLEPQLPQISSASLTVDKRHLLYGNGLVDSLPQPEDNENYQVS SQRFPFTINVNGPGATALAWHYLPTQLPLAVLLSLLVGYIAWLATAYRMSFSREINLG LAQHEFELFCQPLLNARSQQCIGVEILLRWNNPRQGWISPDVFIPIAEEHHLIVPLTR YVMAETIRQRHVFPMSSQFHVGINVAPSHFRRGVLIKDLNQYWFSAHPIQQLILEITE RDALLDVDYRIARELHRKNVKLAIDDFGTGNSSFSWLETLRPDVLKIDKSFTAAIGSD AVNSTVTDIIIALGQRLNIELVAEGVETQEQAKYLRRHGVHILQGYLYAQPMPLRDFP KWLAGSQPPPARHNGHITPIMPLR" gene complement(1900029..1901585) /gene="yoaE" /locus_tag="b1816" /gene_synonym="borG; ECK1814; JW1805" /db_xref="EcoGene:EG13517" /db_xref="GeneID:946335" CDS complement(1900029..1901585) /gene="yoaE" /locus_tag="b1816" /gene_synonym="borG; ECK1814; JW1805" /function="putative transport; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative membrane protein/conserved protein" /protein_id="NP_416330.1" /db_xref="GI:16129770" /db_xref="ASAP:ABE-0006045" /db_xref="UniProtKB/Swiss-Prot:P0AEC0" /db_xref="EcoGene:EG13517" /db_xref="GeneID:946335" /translation="MEFLMDPSIWAGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRD KARLLGLSLALIMRLGLLSLISWMVTLTKPLFTVMDFSFSGRDLIMLFGGIFLLFKAT TELHERLENRDHDSGHGKGYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAA VVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAI GFSIIIEVFNQIARRNFIRHQSTLPLRARTADAILRLMGGKRQANVQHDADNPMPMPI PEGAFAEEERYMINGVLTLASRSLRGIMTPRGEISWVDANLGVDEIREQLLSSPHSLF PVCRGELDEIIGIVRAKELLVALEEGVDVAAIASASPAIIVPETLDPINLLGVLRRAR GSFVIVTNEFGVVQGLVTPLDVLEAIAGEFPDADETPEIITDGDGWLVKGGTDLHALQ QALDVEHLADDDDIATVAGLVISANGHIPRVGDVIDVGPLHITIIEANDYRVDLVRIV KEQPAHDEDE" gene 1902048..1903019 /gene="manX" /locus_tag="b1817" /gene_synonym="ECK1815; gptB; JW1806; mpt; ptsL; ptsX" /db_xref="EcoGene:EG10567" /db_xref="GeneID:946334" CDS 1902048..1903019 /gene="manX" /locus_tag="b1817" /gene_synonym="ECK1815; gptB; JW1806; mpt; ptsL; ptsX" /EC_number="2.7.1.69" /function="enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="PTS enzyme IIAB, mannose-specific" /codon_start=1 /transl_table=11 /product="fused mannose-specific PTS enzymes: IIA component/IIB component" /protein_id="NP_416331.1" /db_xref="GI:16129771" /db_xref="ASAP:ABE-0006054" /db_xref="UniProtKB/Swiss-Prot:P69797" /db_xref="EcoGene:EG10567" /db_xref="GeneID:946334" /translation="MTIAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAET LIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVDKEHYEVIAGVNIPMLVETL MARDDDPSFDELVALAVETGREGVKALKAKPVEKAAPAPAAAAPKAAPTPAKPMGPND YMVIGLARIDDRLIHGQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTA HVVDVAKMIRVYNNPKYAGERVMLLFTNPTDVERLVEGGVKITSVNVGGMAFRQGKTQ VNNAVSVDEKDIEAFKKLNARGIELEVRKVSTDPKLKMMDLISKIDK" gene 1903082..1903882 /gene="manY" /locus_tag="b1818" /gene_synonym="ECK1816; JW1807; pel; ptsP; ptsX" /db_xref="EcoGene:EG10568" /db_xref="GeneID:946332" CDS 1903082..1903882 /gene="manY" /locus_tag="b1818" /gene_synonym="ECK1816; JW1807; pel; ptsP; ptsX" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="PTS enzyme IIC, mannose-specific" /codon_start=1 /transl_table=11 /product="mannose-specific enzyme IIC component of PTS" /protein_id="NP_416332.1" /db_xref="GI:16129772" /db_xref="ASAP:ABE-0006056" /db_xref="UniProtKB/Swiss-Prot:P69801" /db_xref="EcoGene:EG10568" /db_xref="GeneID:946332" /translation="MEITTLQIVLVFIVACIAGMGSILDEFQFHRPLIACTLVGIVLG DMKTGIIIGGTLEMIALGWMNIGAAVAPDAALASIISTILVIAGHQSIGAGIALAIPL AAAGQVLTIIVRTITVAFQHAADKAADNGNLTAISWIHVSSLFLQAMRVAIPAVIVAL SVGTSEVQNMLNAIPEVVTNGLNIAGGMIVVVGYAMVINMMRAGYLMPFFYLGFVTAA FTNFNLVALGVIGTVMAVLYIQLSPKYNRVAGAPAQAAGNNDLDNELD" gene 1903895..1904746 /gene="manZ" /locus_tag="b1819" /gene_synonym="ECK1817; gptB; JW1808; mpt; ptsM; ptsX" /db_xref="EcoGene:EG10569" /db_xref="GeneID:946342" CDS 1903895..1904746 /gene="manZ" /locus_tag="b1819" /gene_synonym="ECK1817; gptB; JW1808; mpt; ptsM; ptsX" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="PTS enzyme IID, mannose-specific" /codon_start=1 /transl_table=11 /product="mannose-specific enzyme IID component of PTS" /protein_id="NP_416333.4" /db_xref="GI:345452720" /db_xref="ASAP:ABE-0006058" /db_xref="UniProtKB/Swiss-Prot:P69805" /db_xref="EcoGene:EG10569" /db_xref="GeneID:946342" /translation="MVDTTQTTTEKKLTQSDIRGVFLRSNLFQGSWNFERMQALGFCF SMVPAIRRLYPENNEARKQAIRRHLEFFNTQPFVAAPILGVTLALEEQRANGAEIDDG AINGIKVGLMGPLAGVGDPIFWGTVRPVFAALGAGIAMSGSLLGPLLFFILFNLVRLA TRYYGVAYGYSKGIDIVKDMGGGFLQKLTEGASILGLFVMGALVNKWTHVNIPLVVSR ITDQTGKEHVTTVQTILDQLMPGLVPLLLTFACMWLLRKKVNPLWIIVGFFVIGIAGY ACGLLGL" gene 1904801..1905259 /gene="yobD" /locus_tag="b1820" /gene_synonym="ECK1818; JW1809" /db_xref="EcoGene:EG13948" /db_xref="GeneID:946343" CDS 1904801..1905259 /gene="yobD" /locus_tag="b1820" /gene_synonym="ECK1818; JW1809" /codon_start=1 /transl_table=11 /product="UPF0266 family inner membrane protein" /protein_id="NP_416334.1" /db_xref="GI:16129774" /db_xref="ASAP:ABE-0006062" /db_xref="UniProtKB/Swiss-Prot:P67601" /db_xref="EcoGene:EG13948" /db_xref="GeneID:946343" /translation="MTITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGR IDSVIFVGLIVILIYNNVTNHGALITTWLLSALALMGFYIFWIRVPKIIFKQKGFFFA NVWIEYSRIKAMNLSEDGVLVMQLEQRRLLIRVRNIDDLEKIYKLLVSTQ" gene 1905688..1906254 /gene="mntP" /locus_tag="b1821" /gene_synonym="ECK1819; JW5830; yebN" /db_xref="EcoGene:EG14012" /db_xref="GeneID:946341" CDS 1905688..1906254 /gene="mntP" /locus_tag="b1821" /gene_synonym="ECK1819; JW5830; yebN" /function="putative transport; Not classified" /codon_start=1 /transl_table=11 /product="putative Mn(2+) efflux pump, mntR-regulated" /protein_id="NP_416335.4" /db_xref="GI:162135903" /db_xref="ASAP:ABE-0006065" /db_xref="UniProtKB/Swiss-Prot:P76264" /db_xref="EcoGene:EG14012" /db_xref="GeneID:946341" /translation="MNITATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFG AVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRR HGFWLLVTTAIATSLDAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGS IIGKKAEILGGLVLIGIGVQILWTHFHG" gene complement(1906251..1907060) /gene="rlmA" /locus_tag="b1822" /gene_synonym="ECK1820; JW1811; rrmA; yebH" /db_xref="EcoGene:EG12207" /db_xref="GeneID:946340" CDS complement(1906251..1907060) /gene="rlmA" /locus_tag="b1822" /gene_synonym="ECK1820; JW1811; rrmA; yebH" /EC_number="2.1.1.187" /function="enzyme; rRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="23S rRNA m(1)G745 methyltransferase, SAM-dependent" /protein_id="NP_416336.1" /db_xref="GI:16129776" /db_xref="ASAP:ABE-0006067" /db_xref="UniProtKB/Swiss-Prot:P36999" /db_xref="EcoGene:EG12207" /db_xref="GeneID:946340" /translation="MSFSCPLCHQPLSREKNSYICPQRHQFDMAKEGYVNLLPVQHKR SRDPGDSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHA FADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK AEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAELCY PMRLRGDEAVALLQMTPFAWRAKPEVWQTLAAKEVFDCQTDFNIHLWQRSY" gene complement(1907226..1907435) /gene="cspC" /locus_tag="b1823" /gene_synonym="ECK1821; JW1812; msmB" /db_xref="EcoGene:EG12204" /db_xref="GeneID:946339" CDS complement(1907226..1907435) /gene="cspC" /locus_tag="b1823" /gene_synonym="ECK1821; JW1812; msmB" /function="phenotype; Not classified" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0009266 - response to temperature stimulus; GO:0006350 - transcription" /note="cold shock protein" /codon_start=1 /transl_table=11 /product="stress protein, member of the CspA-family" /protein_id="NP_416337.1" /db_xref="GI:16129777" /db_xref="ASAP:ABE-0006070" /db_xref="UniProtKB/Swiss-Prot:P0A9Y6" /db_xref="EcoGene:EG12204" /db_xref="GeneID:946339" /translation="MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTL AEGQNVEFEIQDGQKGPAAVNVTAI" gene complement(1907448..1907591) /gene="yobF" /locus_tag="b1824" /gene_synonym="ECK1822; JW1813" /db_xref="EcoGene:EG14382" /db_xref="GeneID:946338" CDS complement(1907448..1907591) /gene="yobF" /locus_tag="b1824" /gene_synonym="ECK1822; JW1813" /codon_start=1 /transl_table=11 /product="DUF2527 family heat-induced protein" /protein_id="NP_416338.1" /db_xref="GI:16129778" /db_xref="ASAP:ABE-0006072" /db_xref="UniProtKB/Swiss-Prot:P64508" /db_xref="EcoGene:EG14382" /db_xref="GeneID:946338" /translation="MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSMLCLRAK KTI" gene complement(1908261..1908548) /gene="yebO" /locus_tag="b1825" /gene_synonym="ECK1823; JW1814" /db_xref="EcoGene:EG14014" /db_xref="GeneID:946350" CDS complement(1908261..1908548) /gene="yebO" /locus_tag="b1825" /gene_synonym="ECK1823; JW1814" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_416339.1" /db_xref="GI:16129779" /db_xref="ASAP:ABE-0006075" /db_xref="UniProtKB/Swiss-Prot:P64499" /db_xref="EcoGene:EG14014" /db_xref="GeneID:946350" /translation="MNEVVNSGVMNIASLVVSVVVLLIGLILWFFINRASSRTNEQIE LLEALLDQQKRQNALLRRLCEANEPEKADKKTVESQKSVEDEDIIRLVAER" gene complement(1908623..1908766) /gene="mgrB" /locus_tag="b1826" /gene_synonym="ECK1824; JW1815; yobG" /db_xref="EcoGene:EG14383" /db_xref="GeneID:946351" CDS complement(1908623..1908766) /gene="mgrB" /locus_tag="b1826" /gene_synonym="ECK1824; JW1815; yobG" /function="regulator; Not classified" /codon_start=1 /transl_table=11 /product="regulatory peptide for PhoPQ, feedback inhibition" /protein_id="NP_416340.1" /db_xref="GI:16129780" /db_xref="ASAP:ABE-0006078" /db_xref="UniProtKB/Swiss-Prot:P64512" /db_xref="EcoGene:EG14383" /db_xref="GeneID:946351" /translation="MKKFRWVVLVVVVLACLLLWAQVFNMMCDQDVQFFSGICAINQF IPW" gene 1908925..1909164 /gene="yobH" /locus_tag="b4536" /gene_synonym="ECK1825; JW5298" /db_xref="EcoGene:EG14424" /db_xref="GeneID:1450271" CDS 1908925..1909164 /gene="yobH" /locus_tag="b4536" /gene_synonym="ECK1825; JW5298" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_588456.1" /db_xref="GI:94541114" /db_xref="ASAP:ABE-0285057" /db_xref="UniProtKB/Swiss-Prot:Q2MB16" /db_xref="EcoGene:EG14424" /db_xref="GeneID:1450271" /translation="MRFIIRTVMLIALVWIGLLLSGYGVLIGSKENAAGLGLQCTYLT ARGTSTVQYLHTKSGFLGITDCPLLRKSNIVVDNG" gene complement(1909308..1910099) /gene="kdgR" /locus_tag="b1827" /gene_synonym="ECK1826; JW1816; yebP" /db_xref="EcoGene:EG14018" /db_xref="GeneID:946129" CDS complement(1909308..1910099) /gene="kdgR" /locus_tag="b1827" /gene_synonym="ECK1826; JW1816; yebP" /function="regulator; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="KDG regulon transcriptional repressor" /protein_id="NP_416341.1" /db_xref="GI:16129781" /db_xref="ASAP:ABE-0006081" /db_xref="UniProtKB/Swiss-Prot:P76268" /db_xref="EcoGene:EG14018" /db_xref="GeneID:946129" /translation="MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMS KSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMRELSR LTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDRDEV KQILEGVEYKRSTERTITSTEALLPVLDQVREQGYGEDNEEQEEGLRCIAVPVFDRFG VVIAGLSISFPTLRFSEERLQEYVAMLHTAARKISAQMGYHDYPF" gene 1910276..1911649 /gene="yebQ" /locus_tag="b1828" /gene_synonym="ECK1827; JW5299" /db_xref="EcoGene:EG14019" /db_xref="GeneID:946048" CDS 1910276..1911649 /gene="yebQ" /locus_tag="b1828" /gene_synonym="ECK1827; JW5299" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="NP_416342.4" /db_xref="GI:90111339" /db_xref="ASAP:ABE-0006085" /db_xref="UniProtKB/Swiss-Prot:P76269" /db_xref="EcoGene:EG14019" /db_xref="GeneID:946048" /translation="MPKVQADGLPLPQRYGAILTIVIGISMAVLDGAIANVALPTIAT DLHATPASSIWVVNAYQIAIVISLLSFSFLGDMFGYRRIYKCGLVVFLLSSLFCALSD SLQMLTLARVIQGFGGAALMSVNTALIRLIYPQRFLGRGMGINSFIVAVSSAAGPTIA AAILSIASWKWLFLINVPLGIIALLLAMRFLPPNGSRASKPRFDLPSAVMNALTFGLL ITALSGFAQGQSLTLIAAELVVMVVVGIFFIRRQLSLPVPLLPVDLLRIPLFSLSICT SVCSFCAQMLAMVSLPFYLQTVLGRSEVETGLLLTPWPLATMVMAPLAGYLIERVHAG LLGALGLFIMAAGLFSLVLLPASPADINIIWPMILCGAGFGLFQSPNNHTIITSAPRE RSGGASGMLGTARLLGQSSGAALVALMLNQFGDNGTHVSLMAAAILAVIAACVSGLRI TQPRSRA" gene complement(1911695..1912576) /gene="htpX" /locus_tag="b1829" /gene_synonym="ECK1828; JW1818" /db_xref="EcoGene:EG10462" /db_xref="GeneID:946076" CDS complement(1911695..1912576) /gene="htpX" /locus_tag="b1829" /gene_synonym="ECK1828; JW1818" /function="orf; Adaptations, atypical conditions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009266 - response to temperature stimulus" /note="heat shock protein, integral membrane protein" /codon_start=1 /transl_table=11 /product="putative endopeptidase" /protein_id="NP_416343.1" /db_xref="GI:16129783" /db_xref="ASAP:ABE-0006087" /db_xref="UniProtKB/Swiss-Prot:P23894" /db_xref="EcoGene:EG10462" /db_xref="GeneID:946076" /translation="MMRIALFLLTNLAVMVVFGLVLSLTGIQSSSVQGLMIMALLFGF GGSFVSLLMSKWMALRSVGGEVIEQPRNERERWLVNTVATQARQAGIAMPQVAIYHAP DINAFATGARRDASLVAVSTGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVN TFVIFISRILAQLAAGFMGGNRDEGEESNGNPLIYFAVATVLELVFGILASIITMWFS RHREFHADAGSAKLVGREKMIAALQRLKTSYEPQEATSMMALCINGKSKSLSELFMTH PPLDKRIEALRTGEYLK" gene complement(1912768..1914816) /gene="prc" /locus_tag="b1830" /gene_synonym="ECK1829; JW1819; tsp" /db_xref="EcoGene:EG10760" /db_xref="GeneID:946096" CDS complement(1912768..1914816) /gene="prc" /locus_tag="b1830" /gene_synonym="ECK1829; JW1819; tsp" /EC_number="3.4.21.102" /function="enzyme; Degradation of proteins, peptides, glyco" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process; GO:0006457 - protein folding; GO:0042493 - response to drug" /codon_start=1 /transl_table=11 /product="carboxy-terminal protease for penicillin-binding protein 3" /protein_id="NP_416344.1" /db_xref="GI:16129784" /db_xref="ASAP:ABE-0006090" /db_xref="UniProtKB/Swiss-Prot:P23865" /db_xref="EcoGene:EG10760" /db_xref="GeneID:946096" /translation="MNMFFRLTALAGLLAIAGQTFAVEDITRADQIPVLKEETQHATV SERVTSRFTRSHYRQFDLDQAFSAKIFDRYLNLLDYSHNVLLASDVEQFAKKKTELGD ELRSGKLDVFYDLYNLAQKRRFERYQYALSVLEKPMDFTGNDTYNLDRSKAPWPKNEA ELNALWDSKVKFDELSLKLTGKTDKEIRETLTRRYKFAIRRLAQTNSEDVFSLAMTAF AREIDPHTNYLSPRNTEQFNTEMSLSLEGIGAVLQMDDDYTVINSMVAGGPAAKSKAI SVGDKIVGVGQTGKPMVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRTVTLT RERIRLEDRAVKMSVKTVGKEKVGVLDIPGFYVGLTDDVKVQLQKLEKQNVSSVIIDL RSNGGGALTEAVSLSGLFIPAGPIVQVRDNNGKVREDSDTDGQVFYKGPLVVLVDRFS ASASEIFAAAMQDYGRALVVGEPTFGKGTVQQYRSLNRIYDQMLRPEWPALGSVQYTI QKFYRVNGGSTQRKGVTPDIIMPTGNEETETGEKFEDNALPWDSIDAATYVKSGDLTA FEPELLKEHNARIAKDPEFQNIMKDIARFNAMKDKRNIVSLNYAVREKENNEDDATRL ARLNERFKREGKPELKKLDDLPKDYQEPDPYLDETVNIALDLAKLEKARPAEQPAPVK " gene complement(1914836..1915534) /gene="proQ" /locus_tag="b1831" /gene_synonym="ECK1830; JW5300; yebJ; yobE; yoeC" /db_xref="EcoGene:EG12866" /db_xref="GeneID:948950" CDS complement(1914836..1915534) /gene="proQ" /locus_tag="b1831" /gene_synonym="ECK1830; JW5300; yebJ; yobE; yoeC" /GO_process="GO:0006970 - response to osmotic stress" /note="regulator of ProP; putative structural element which influences activation of ProP" /codon_start=1 /transl_table=11 /product="RNA chaperone, putative ProP translation regulator" /protein_id="YP_026161.1" /db_xref="GI:49176156" /db_xref="ASAP:ABE-0006092" /db_xref="UniProtKB/Swiss-Prot:P45577" /db_xref="EcoGene:EG12866" /db_xref="GeneID:948950" /translation="MENQPKLNSSKEVIAFLAERFPHCFSAEGEARPLKIGIFQDLVD RVAGEMNLSKTQLRSALRLYTSSWRYLYGVKPGATRVDLDGNPCGELDEQHVEHARKQ LEEAKARVQAQRAEQQAKKREAAATAGEKEDAPRRERKPRPTTPRRKEGAERKPRAQK PVEKAPKTVKAPREEQHTPVSDISALTVGQALKVKAGQNAMDATVLEITKDGVRVQLN SGMSLIVRAEHLVF" gene complement(1915631..1916128) /gene="msrC" /locus_tag="b1832" /gene_synonym="ECK1831; JW1821; yebR" /db_xref="EcoGene:EG14020" /db_xref="GeneID:946086" CDS complement(1915631..1916128) /gene="msrC" /locus_tag="b1832" /gene_synonym="ECK1831; JW1821; yebR" /codon_start=1 /transl_table=11 /product="free methionine-(R)-sulfoxide reductase" /protein_id="NP_416346.4" /db_xref="GI:171701682" /db_xref="ASAP:ABE-0006095" /db_xref="UniProtKB/Swiss-Prot:P76270" /db_xref="EcoGene:EG14020" /db_xref="GeneID:946086" /translation="MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDINW AGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHVFDGHIACDA ASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFF ASVAG" gene 1916258..1917541 /gene="yebS" /locus_tag="b1833" /gene_synonym="ECK1832; JW1822" /db_xref="EcoGene:EG14021" /db_xref="GeneID:946353" CDS 1916258..1917541 /gene="yebS" /locus_tag="b1833" /gene_synonym="ECK1832; JW1822" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="inner membrane PqiA domain protein" /protein_id="NP_416347.1" /db_xref="GI:16129786" /db_xref="ASAP:ABE-0006098" /db_xref="UniProtKB/Swiss-Prot:P0AD03" /db_xref="EcoGene:EG14021" /db_xref="GeneID:946353" /translation="MALNTPQITPTKKITVRAIGEELPRGDYQRCPQCDMLFSLPEIN SHQSAYCPRCQAKIRDGRDWSLTRLAAMAFTMLLLMPFAWGEPLLHIWLLGIRIDANV MQGIWQMTKQGDAITGSMVFFCVIGAPLILVTSIAYLWFGNRLGMNLRPVLLMLERLK EWVMLDIYLVGIGVASIKVQDYAHIQAGVGLFSFVALVILTTVTLSHLNVEELWERFY PQRPATRRDEKLRVCLGCHFTGYPDQRGRCPRCHIPLRLRRRHSLQKCWAALLASIVL LLPANLLPISIIYLNGGRQEDTILSGIMSLASSNIAVAGIVFIASILVPFTKVIVMFT LLLSIHFKCQQGLRTRILLLRMVTWIGRWSMLDLFVISLTMSLINRDQILAFTMGPAA FYFGAAVILTILAVEWLDSRLLWDAHESGNARFDD" gene 1917510..1920143 /gene="yebT" /locus_tag="b1834" /gene_synonym="ECK1833; JW1823" /db_xref="EcoGene:EG14022" /db_xref="GeneID:946352" CDS 1917510..1920143 /gene="yebT" /locus_tag="b1834" /gene_synonym="ECK1833; JW1823" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="MCE domain protein" /protein_id="NP_416348.2" /db_xref="GI:90111340" /db_xref="ASAP:ABE-0006101" /db_xref="UniProtKB/Swiss-Prot:P76272" /db_xref="EcoGene:EG14022" /db_xref="GeneID:946352" /translation="MSQETPASTTEAQIKNKRRISPFWLLPFIALMIASWLIWDSYQD RGNTVTIDFMSADGIVPGRTPVRYQGVEVGTVQDISLSDDLRKIEVKVSIKSDMKDAL REETQFWLVTPKASLAGVSGLDALVGGNYIGMMPGKGKEQDHFVALDTQPKYRLDNGD LMIHLQAPDLGSLNSGSLVYFRKIPVGKVYDYAINPNKQGVVIDVLIERRFTDLVKKG SRFWNVSGVDANVSISGAKVKLESLAALVNGAIAFDSPEESKPAEAEDTFGLYEDLAH SQRGVIIKLELPSGAGLTADSTPLMYQGLEVGQLTKLDLNPGGKVTGEMTVDPSVVTL LRENTRIELRNPKLSLSDANLSALLTGKTFELVPGDGEPRKEFVVVPGEKALLHEPDV LTLTLTAPESYGIDAGQPLILHGVQVGQVIDRKLTSKGVTFTVAIEPQHRELVKGDSK FVVNSRVDVKVGLDGVEFLGASASEWINGGIRILPGDKGEMKASYPLYANLEKALENS LSDLPTTTVSLSAETLPDVQAGSVVLYRKFEVGEVITVRPRANAFDIDLHIKPEYRNL LTSNSVFWAEGGAKVQLNGSGLTVQASPLSRALKGAISFDNLSGASASQRKGDKRILY ASETAARAVGGQITLHAFDAGKLAVGMPIRYLGIDIGQIQTLDLITARNEVQAKAVLY PEYVQTFARGGTRFSVVTPQISAAGVEHLDTILQPYINVEPGRGNPRRDFELQEATIT DSRYLDGLSIIVEAPEAGSLGIGTPVLFRGLEVGTVTGMTLGTLSDRVMIAMRISKRY QHLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGIAFATPPGTPLAPKAQEGK HFLLQESEPKEWREWGTALPK" gene 1920223..1921662 /gene="rsmF" /locus_tag="b1835" /gene_synonym="ECK1834; JW5301; yebU" /db_xref="EcoGene:EG14023" /db_xref="GeneID:946348" CDS 1920223..1921662 /gene="rsmF" /locus_tag="b1835" /gene_synonym="ECK1834; JW5301; yebU" /function="enzyme; rRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="16S rRNA m(5)C1407 methyltransferase, SAM-dependent" /protein_id="NP_416349.2" /db_xref="GI:90111341" /db_xref="ASAP:ABE-0006106" /db_xref="UniProtKB/Swiss-Prot:P76273" /db_xref="EcoGene:EG14023" /db_xref="GeneID:946348" /translation="MAQHTVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVN TLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEA SSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHA NISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESN QEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGD LFPGANKALTEEGFLHVFPQIYDCEGFFVARLRKTQAIPALPAPKYKVGNFPFSPVKD REAGQIRQAATGVGLNWDENLRLWQRDKELWLFPVGIEALIGKVRFSRLGIKLAETHN KGYRWQHEAVIALASPDNMNAFELTPQEAEEWYRGRDVYPQAAPVADDVLVTFQHQPI GLAKRIGSRLKNSYPRELVRDGKLFTGNA" gene 1921780..1922016 /gene="yebV" /locus_tag="b1836" /gene_synonym="ECK1835; JW5302" /db_xref="EcoGene:EG14024" /db_xref="GeneID:946347" CDS 1921780..1922016 /gene="yebV" /locus_tag="b1836" /gene_synonym="ECK1835; JW5302" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416350.4" /db_xref="GI:90111342" /db_xref="ASAP:ABE-0006110" /db_xref="UniProtKB/Swiss-Prot:P64503" /db_xref="EcoGene:EG14024" /db_xref="GeneID:946347" /translation="MKTSVRIGAFEIDDGELHGESPGDRTLTIPCKSDPDLCMQLDAW DAETSIPALLNGEHSVLYRTRYDQQSDAWIMRLA" gene 1922121..1922312 /gene="yebW" /locus_tag="b1837" /gene_synonym="ECK1836; JW5303" /db_xref="EcoGene:EG14025" /db_xref="GeneID:946354" CDS 1922121..1922312 /gene="yebW" /locus_tag="b1837" /gene_synonym="ECK1836; JW5303" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416351.2" /db_xref="GI:90111343" /db_xref="ASAP:ABE-0006112" /db_xref="UniProtKB/Swiss-Prot:P76275" /db_xref="EcoGene:EG14025" /db_xref="GeneID:946354" /translation="MFALVLFVCYLDGGCEDIVVDVYNTEQQCLYSMSDQRIRQGGCF PIEDFIDGFWRPAQEYGDF" gene complement(1922313..1922969) /gene="pphA" /locus_tag="b1838" /gene_synonym="ECK1837; JW1827; prpA; yebX" /db_xref="EcoGene:EG14026" /db_xref="GeneID:946356" CDS complement(1922313..1922969) /gene="pphA" /locus_tag="b1838" /gene_synonym="ECK1837; JW1827; prpA; yebX" /EC_number="3.1.3.16" /function="regulator; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006464 - protein modification process; GO:0009266 - response to temperature stimulus" /codon_start=1 /transl_table=11 /product="serine/threonine-specific protein phosphatase 1" /protein_id="NP_416352.4" /db_xref="GI:90111344" /db_xref="ASAP:ABE-0006114" /db_xref="UniProtKB/Swiss-Prot:P55798" /db_xref="EcoGene:EG14026" /db_xref="GeneID:946356" /translation="MKQPAPVYQRIAGHQWRHIWLSGDIHGCLEQLRRKLWHCRFDPW RDLLISVGDVIDRGPQSLRCLQLLEQHWVCAVRGNHEQMAMDALASQQMSLWLMNGGD WFIALADNQQKQAKTALEKCQHLPFILEVHSRTGKHVIAHADYPDDVYEWQKDVDLHQ VLWSRSRLGERQKGQGITGADHFWFGHTPLRHRVDIGNLHYIDTGAVFGGELTLVQLQ " gene 1923066..1923314 /gene="ryeA" /locus_tag="b4432" /gene_synonym="ECK1838; IS091; JWR0237; psrA8; sraC; tpke79" /db_xref="EcoGene:EG31146" /db_xref="GeneID:2847771" ncRNA 1923066..1923314 /ncRNA_class="other" /gene="ryeA" /locus_tag="b4432" /gene_synonym="ECK1838; IS091; JWR0237; psrA8; sraC; tpke79" /product="novel sRNA, function unknown" /note="identified in a large scale screen" /db_xref="ASAP:ABE-0047252" /db_xref="EcoGene:EG31146" /db_xref="GeneID:2847771" gene complement(1923164..1923284) /gene="sdsR" /locus_tag="b4433" /gene_synonym="ECK1839; JWR0238; ryeB; tpke79" /db_xref="EcoGene:EG31147" /db_xref="GeneID:2847772" ncRNA complement(1923164..1923284) /ncRNA_class="other" /gene="sdsR" /locus_tag="b4433" /gene_synonym="ECK1839; JWR0238; ryeB; tpke79" /product="novel sRNA, function unknown" /note="identified in a large scale screen" /db_xref="ASAP:ABE-0047253" /db_xref="EcoGene:EG31147" /db_xref="GeneID:2847772" gene complement(1923365..1923706) /gene="yebY" /locus_tag="b1839" /gene_synonym="ECK1840; JW1828" /db_xref="EcoGene:EG14027" /db_xref="GeneID:947014" CDS complement(1923365..1923706) /gene="yebY" /locus_tag="b1839" /gene_synonym="ECK1840; JW1828" /codon_start=1 /transl_table=11 /product="DUF2511 family protein" /protein_id="NP_416353.1" /db_xref="GI:16129792" /db_xref="ASAP:ABE-0006118" /db_xref="UniProtKB/Swiss-Prot:P64506" /db_xref="EcoGene:EG14027" /db_xref="GeneID:947014" /translation="MMKKSILAFLLLTSSAAALAAPQVITVSRFEVGKDKWAFNREEV MLTCRPGNALYVINPSTLVQYPLNDIAQKEVASGKTNAQPISVIQIDDPNNPGEKMSL APFIERAEKLC" gene complement(1923719..1924591) /gene="yebZ" /locus_tag="b1840" /gene_synonym="ECK1841; JW1829" /db_xref="EcoGene:EG14028" /db_xref="GeneID:947078" CDS complement(1923719..1924591) /gene="yebZ" /locus_tag="b1840" /gene_synonym="ECK1841; JW1829" /function="putative transport; Drug/analog sensitivity" /GO_process="GO:0042493 - response to drug" /note="putative resistance protein" /codon_start=1 /transl_table=11 /product="inner membrane protein" /protein_id="NP_416354.1" /db_xref="GI:16129793" /db_xref="ASAP:ABE-0006120" /db_xref="UniProtKB/Swiss-Prot:P76278" /db_xref="EcoGene:EG14028" /db_xref="GeneID:947078" /translation="MLAFTWIALRFIHFTSLMLVFGFAMYGAWLAPLTIRRLLAKRFL RLQQHAAVWSLISATAMLAVQGGLMGTGWTDVFSPNIWQAVLQTQFGGIWLWQIVLAL VTLIVALMQPRNMPRLLFMLTTAQFILLAGVGHATLNEGVTAKIHQTNHAIHLICAAA WFGGLLPVLWCMQLIKGRWRHQAIQALMRFSWCGHFAVIGVLASGVLNALLITGFPPT LTTYWGQLLLLKAILVMIMVVIALANRYVLVPRMRQDEDRAAPWFVWMTKLEWAIGAV VLVIISLLATLEPF" gene complement(1924595..1924969) /gene="yobA" /locus_tag="b1841" /gene_synonym="ECK1842; JW1830" /db_xref="EcoGene:EG14029" /db_xref="GeneID:948315" CDS complement(1924595..1924969) /gene="yobA" /locus_tag="b1841" /gene_synonym="ECK1842; JW1830" /codon_start=1 /transl_table=11 /product="CopC family protein" /protein_id="NP_416355.1" /db_xref="GI:16129794" /db_xref="ASAP:ABE-0006123" /db_xref="UniProtKB/Swiss-Prot:P0AA57" /db_xref="EcoGene:EG14029" /db_xref="GeneID:948315" /translation="MASTARSLRYALAILTTSLVTPSVWAHAHLTHQYPAANAQVTAA PQAITLNFSEGVETGFSGAKITGPKNENIKTLPAKRNEQDQKQLIVPLADSLKPGTYT VDWHVVSVDGHKTKGHYTFSVK" gene 1925108..1925338 /gene="holE" /locus_tag="b1842" /gene_synonym="ECK1843; JW1831" /db_xref="EcoGene:EG11505" /db_xref="GeneID:947471" CDS 1925108..1925338 /gene="holE" /locus_tag="b1842" /gene_synonym="ECK1843; JW1831" /EC_number="2.7.7.7" /function="enzyme; DNA - replication, repair, restriction/modification" /experiment="N-terminus verified by Edman degradation: PMID 8246893,8505306" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication" /codon_start=1 /transl_table=11 /product="DNA polymerase III, theta subunit" /protein_id="NP_416356.1" /db_xref="GI:16129795" /db_xref="ASAP:ABE-0006126" /db_xref="UniProtKB/Swiss-Prot:P0ABS8" /db_xref="EcoGene:EG11505" /db_xref="GeneID:947471" /translation="MLKNLAKLDQTEMDKVNVDLAAAGVAFKERYNMPVIAEAVEREQ PEHLRSWFRERLIAHRLASVNLSRLPYEPKLK" gene 1925440..1926096 /gene="yobB" /locus_tag="b1843" /gene_synonym="ECK1844; JW1832" /db_xref="EcoGene:EG14030" /db_xref="GeneID:948329" CDS 1925440..1926096 /gene="yobB" /locus_tag="b1843" /gene_synonym="ECK1844; JW1832" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="C-N hydrolase family protein" /protein_id="NP_416357.1" /db_xref="GI:16129796" /db_xref="ASAP:ABE-0006129" /db_xref="UniProtKB/Swiss-Prot:P76280" /db_xref="EcoGene:EG14030" /db_xref="GeneID:948329" /translation="MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPS LSLLGCDYSRRALPAPPDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPW RKTPGIYHQSHGACLGRRSRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARR LQFFSHQYSIAVLMANARGNSALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR " gene 1926120..1926782 /gene="exoX" /locus_tag="b1844" /gene_synonym="ECK1845; JW1833; yobC" /db_xref="EcoGene:EG14031" /db_xref="GeneID:946361" CDS 1926120..1926782 /gene="exoX" /locus_tag="b1844" /gene_synonym="ECK1845; JW1833; yobC" /EC_number="3.1.11.-" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006308 - DNA catabolic process; GO:0006281 - DNA repair" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease 10; DNA exonuclease X" /protein_id="NP_416358.1" /db_xref="GI:16129797" /db_xref="ASAP:ABE-0006131" /db_xref="UniProtKB/Swiss-Prot:P0AEK0" /db_xref="EcoGene:EG14031" /db_xref="GeneID:946361" /translation="MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPIS PQAMAIHRITEAMVADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKL ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWLFNNLDSMSPELRLTLKHYLE NT" gene complement(1926779..1928839) /gene="ptrB" /locus_tag="b1845" /gene_synonym="ECK1846; JW1834; opdB; tlp" /db_xref="EcoGene:EG11004" /db_xref="GeneID:946358" CDS complement(1926779..1928839) /gene="ptrB" /locus_tag="b1845" /gene_synonym="ECK1846; JW1834; opdB; tlp" /EC_number="3.4.21.83" /function="enzyme; Degradation of proteins, peptides, glyco" /experiment="N-terminus verified by Edman degradation: PMID 1769955" /codon_start=1 /transl_table=11 /product="protease II" /protein_id="NP_416359.1" /db_xref="GI:16129798" /db_xref="ASAP:ABE-0006133" /db_xref="UniProtKB/Swiss-Prot:P24555" /db_xref="EcoGene:EG11004" /db_xref="GeneID:946358" /translation="MLPKAARIPHAMTLHGDTRIDNYYWLRDDTRSQPEVLDYLQQEN SYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQS AFSEEWDEWETLLDANKRAAHSEFYSMGGMAITPDNTIMALAEDFLSRRQYGIRFRNL ETGNWYPELLDNVEPSFVWANDSWIFYYVRKHPVTLLPYQVWRHAIGTPASQDKLIYE EKDDTYYVSLHKTTSKHYVVIHLASATTSEVRLLDAEMADAEPFVFLPRRKDHEYSLD HYQHRFYLRSNRHGKNFGLYRTRMRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQ RGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETARLRYGYSSMTTPDTLFELD MDTGERRVLKQTEVPGFYAANYRSEHLWIVARDGVEVPVSLVYHRKHFRKGHNPLLVY GYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDY LDACDALLKLGYGSPSLCYAMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTML DESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWE PAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLVALAQGTLPA TPAD" gene complement(1929048..1929707) /gene="yebE" /locus_tag="b1846" /gene_synonym="ECK1847; JW1835" /db_xref="EcoGene:EG11806" /db_xref="GeneID:946355" CDS complement(1929048..1929707) /gene="yebE" /locus_tag="b1846" /gene_synonym="ECK1847; JW1835" /codon_start=1 /transl_table=11 /product="DUF533 family inner membrane protein" /protein_id="NP_416360.1" /db_xref="GI:16129799" /db_xref="ASAP:ABE-0006137" /db_xref="UniProtKB/Swiss-Prot:P33218" /db_xref="EcoGene:EG11806" /db_xref="GeneID:946355" /translation="MANWLNQLQSLLGQSSSSTSSSADQGLVKLLVPGALGGLAGLLV ANKSARKLLTKYGTNALLVGGGAVAGTVLWNKYKDKIRAAHQDEPQFGAQSTPLDERT ARLILALVFAAKSDGHIDAKERAAIDQQLRGAGVEEQGRVLIEQAIEQPLDPQRLATG VRNEEEALEIYFLSCAAIDIDHFMERSYLNALGDALKIPQDVRDGIERDLEQQKRTLA E" repeat_region 1929923..1930006 /note="REP135 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(1930034..1930390) /gene="yebF" /locus_tag="b1847" /gene_synonym="ECK1848; JW1836" /db_xref="EcoGene:EG11807" /db_xref="GeneID:946363" CDS complement(1930034..1930390) /gene="yebF" /locus_tag="b1847" /gene_synonym="ECK1848; JW1836" /codon_start=1 /transl_table=11 /product="extracellular Colicin M immunity family protein" /protein_id="NP_416361.2" /db_xref="GI:145698278" /db_xref="ASAP:ABE-0006141" /db_xref="UniProtKB/Swiss-Prot:P33219" /db_xref="EcoGene:EG11807" /db_xref="GeneID:946363" /translation="MKKRGAFLGLLLVSACASVFAANNETSKSVTFPKCEDLDAAGIA ASVKRDYQQNRVARWADDQKIVGQADPVAWVSLQDIQGKDDKWSVPLTVRGKSADIHY QVSVDCKAGMAEYQRR" gene complement(1930457..1930747) /gene="yebG" /locus_tag="b1848" /gene_synonym="ECK1849; JW1837" /db_xref="EcoGene:EG11808" /db_xref="GeneID:946364" CDS complement(1930457..1930747) /gene="yebG" /locus_tag="b1848" /gene_synonym="ECK1849; JW1837" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006281 - DNA repair; GO:0009432 - SOS response" /codon_start=1 /transl_table=11 /product="DNA damage-inducible protein regulated by LexA" /protein_id="NP_416362.1" /db_xref="GI:16129801" /db_xref="ASAP:ABE-0006145" /db_xref="UniProtKB/Swiss-Prot:P0ACY9" /db_xref="EcoGene:EG11808" /db_xref="GeneID:946364" /translation="MAVEVKYVVIREGEEKMSFTSKKEADAYDKMLDTADLLDTWLTN SPVQMEDEQREALSLWLAEQKDVLSTILKTGKLPSPQVVGAESEEEDASHAA" gene 1930881..1932059 /gene="purT" /locus_tag="b1849" /gene_synonym="ECK1850; JW1838" /db_xref="EcoGene:EG11809" /db_xref="GeneID:946368" CDS 1930881..1932059 /gene="purT" /locus_tag="b1849" /gene_synonym="ECK1850; JW1838" /EC_number="2.7.2.1" /function="enzyme; Purine ribonucleotide biosynthesis" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006164 - purine nucleotide biosynthetic process" /codon_start=1 /transl_table=11 /product="phosphoribosylglycinamide formyltransferase 2" /protein_id="NP_416363.1" /db_xref="GI:16129802" /db_xref="ASAP:ABE-0006162" /db_xref="UniProtKB/Swiss-Prot:P33221" /db_xref="EcoGene:EG11809" /db_xref="GeneID:946368" /translation="MTLLGTALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRY ADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAIATDMLIQLEEEGLNVV PCARATKLTMNREGIRRLAAEELQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSS SGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFC APVGHRQEDGDYRESWQPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCGDEVI FSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPVGGIRQYGPAASAVILPQLTSQN VTFDNVQNAVGADLQIRLFGKPEIDGSRRLGVALATAESVVDAIERAKHAAGQVKVQG " repeat_region 1932086..1932104 /note="REP136 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1932115..1932756) /gene="eda" /locus_tag="b1850" /gene_synonym="ECK1851; hga; JW1839; kdgA; kga" /db_xref="EcoGene:EG10256" /db_xref="GeneID:946367" CDS complement(1932115..1932756) /gene="eda" /locus_tag="b1850" /gene_synonym="ECK1851; hga; JW1839; kdgA; kga" /EC_number="4.1.2.14" /EC_number="4.1.3.16" /function="enzyme; Central intermediary metabolism: Entner-Douderoff" /experiment="N-terminus verified by Edman degradation: PMID 3136164" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0009255 - Entner-Doudoroff pathway; GO:0009436 - glyoxylate catabolic process" /note="2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase" /codon_start=1 /transl_table=11 /product="KHG/KDPG aldolase; 2-dehydro-3-deoxy-phosphogluconate/4-hydroxy-2- oxoglutarate aldolase" /protein_id="NP_416364.1" /db_xref="GI:16129803" /db_xref="ASAP:ABE-0006164" /db_xref="UniProtKB/Swiss-Prot:P0A955" /db_xref="EcoGene:EG10256" /db_xref="GeneID:946367" /translation="MKNWKTSAESILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVL EVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLK AATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCP TGGISPANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAREAVEGAKL" gene complement(1932793..1934604) /gene="edd" /locus_tag="b1851" /gene_synonym="ECK1852; JW1840" /db_xref="EcoGene:EG10257" /db_xref="GeneID:946362" CDS complement(1932793..1934604) /gene="edd" /locus_tag="b1851" /gene_synonym="ECK1852; JW1840" /EC_number="4.2.1.12" /function="enzyme; Central intermediary metabolism: Entner-Douderoff" /GO_process="GO:0009255 - Entner-Doudoroff pathway" /codon_start=1 /transl_table=11 /product="6-phosphogluconate dehydratase" /protein_id="NP_416365.1" /db_xref="GI:16129804" /db_xref="ASAP:ABE-0006166" /db_xref="UniProtKB/Swiss-Prot:P0ADF6" /db_xref="EcoGene:EG10257" /db_xref="GeneID:946362" /translation="MNPQLLRVTNRIIERSRETRSAYLARIEQAKTSTVHRSQLACGN LAHGFAACQPEDKASLKSMLRNNIAIITSYNDMLSAHQPYEHYPEIIRKALHEANAVG QVAGGVPAMCDGVTQGQDGMELSLLSREVIAMSAAVGLSHNMFDGALFLGVCDKIVPG LTMAALSFGHLPAVFVPSGPMASGLPNKEKVRIRQLYAEGKVDRMALLESEAASYHAP GTCTFYGTANTNQMVVEFMGMQLPGSSFVHPDSPLRDALTAAAARQVTRMTGNGNEWM PIGKMIDEKVVVNGIVALLATGGSTNHTMHLVAMARAAGIQINWDDFSDLSDVVPLMA RLYPNGPADINHFQAAGGVPVLVRELLKAGLLHEDVNTVAGFGLSRYTLEPWLNNGEL DWREGAEKSLDSNVIASFEQPFSHHGGTKVLSGNLGRAVMKTSAVPVENQVIEAPAVV FESQHDVMPAFEAGLLDRDCVVVVRHQGPKANGMPELHKLMPPLGVLLDRCFKIALVT DGRLSGASGKVPSAIHVTPEAYDGGLLAKVRDGDIIRVNGQTGELTLLVDEAELAARE PHIPDLSASRVGTGRELFSALREKLSGAEQGATCITF" gene complement(1934839..1936314) /gene="zwf" /locus_tag="b1852" /gene_synonym="ECK1853; JW1841" /db_xref="EcoGene:EG11221" /db_xref="GeneID:946370" CDS complement(1934839..1936314) /gene="zwf" /locus_tag="b1852" /gene_synonym="ECK1853; JW1841" /EC_number="1.1.1.49" /function="enzyme; Energy metabolism, carbon: Oxidative branch, pentose pathway" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0009051 - pentose-phosphate shunt, oxidative branch" /codon_start=1 /transl_table=11 /product="glucose-6-phosphate 1-dehydrogenase" /protein_id="NP_416366.1" /db_xref="GI:16129805" /db_xref="ASAP:ABE-0006171" /db_xref="UniProtKB/Swiss-Prot:P0AC53" /db_xref="EcoGene:EG11221" /db_xref="GeneID:946370" /translation="MAVTQTAQACDLVIFGAKGDLARRKLLPSLYQLEKAGQLNPDTR IIGVGRADWDKAAYTKVVREALETFMKETIDEGLWDTLSARLDFCNLDVNDTAAFSRL GAMLDQKNRITINYFAMPPSTFGAICKGLGEAKLNAKPARVVMEKPLGTSLATSQEIN DQVGEYFEECQVYRIDHYLGKETVLNLLALRFANSLFVNNWDNRTIDHVEITVAEEVG IEGRWGYFDKAGQMRDMIQNHLLQILCMIAMSPPSDLSADSIRDEKVKVLKSLRRIDR SNVREKTVRGQYTAGFAQGKKVPGYLEEEGANKSSNTETFVAIRVDIDNWRWAGVPFY LRTGKRLPTKCSEVVVYFKTPELNLFKESWQDLPQNKLTIRLQPDEGVDIQVLNKVPG LDHKHNLQITKLDLSYSETFNQTHLADAYERLLLETMRGIQALFVRRDEVEEAWKWVD SITEAWAMDNDAPKPYQAGTWGPVASVAMITRDGRSWNEFE" gene 1936652..1937521 /gene="yebK" /locus_tag="b1853" /gene_synonym="ECK1854; hexR; JW1842" /db_xref="EcoGene:EG12860" /db_xref="GeneID:946373" CDS 1936652..1937521 /gene="yebK" /locus_tag="b1853" /gene_synonym="ECK1854; hexR; JW1842" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator" /protein_id="NP_416367.1" /db_xref="GI:16129806" /db_xref="ASAP:ABE-0006179" /db_xref="UniProtKB/Swiss-Prot:P46118" /db_xref="EcoGene:EG12860" /db_xref="GeneID:946373" /translation="MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAAMALEA NVSEPTVNRFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESA MATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYS DDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLARE ATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES RFDKQLLNLSDDR" gene 1937649..1939091 /gene="pykA" /locus_tag="b1854" /gene_synonym="ECK1855; JW1843" /db_xref="EcoGene:EG10803" /db_xref="GeneID:946527" CDS 1937649..1939091 /gene="pykA" /locus_tag="b1854" /gene_synonym="ECK1855; JW1843" /EC_number="2.7.1.40" /function="enzyme; Energy metabolism, carbon: Glycolysis" /GO_process="GO:0009061 - anaerobic respiration; GO:0006113 - fermentation; GO:0006096 - glycolysis" /note="pyruvate kinase II, glucose stimulated" /codon_start=1 /transl_table=11 /product="pyruvate kinase II" /protein_id="NP_416368.1" /db_xref="GI:16129807" /db_xref="ASAP:ABE-0006182" /db_xref="UniProtKB/Swiss-Prot:P21599" /db_xref="EcoGene:EG10803" /db_xref="GeneID:946527" /translation="MSRRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSP EDHKMRADKVREIAAKLGRHVAILGDLQGPKIRVSTFKEGKVFLNIGDKFLLDANLGK GEGDKEKVGIDYKGLPADVVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNK GINKLGGGLSAEALTEKDKADIKTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDA KIVAKVERAEAVCSQDAMDDIILASDVVMVARGDLGVEIGDPELVGIQKALIRRARQL NRAVITATQMMESMITNPMPTRAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAM ARVCLGAEKIPSINVSKHRLDVQFDNVEEAIAMSAMYAANHLKGVTAIITMTESGRTA LMTSRISSGLPIFAMSRHERTLNLTALYRGVTPVHFDSANDGVAAASEAVNLLRDKGY LMSGDLVIVTQGDVMSTVGSTNTTRILTVE" repeat_region 1939099..1939128 /note="REP137 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(1939222..1940193) /gene="lpxM" /locus_tag="b1855" /gene_synonym="ECK1856; JW1844; mlt; msbB; waaN" /db_xref="EcoGene:EG10614" /db_xref="GeneID:945143" CDS complement(1939222..1940193) /gene="lpxM" /locus_tag="b1855" /gene_synonym="ECK1856; JW1844; mlt; msbB; waaN" /EC_number="2.3.1.-" /function="putative factor; Adaptations, atypical conditions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009245 - lipid A biosynthetic process" /note="suppressor of htrB, heat shock protein" /codon_start=1 /transl_table=11 /product="myristoyl-acyl carrier protein (ACP)-dependent acyltransferase" /protein_id="NP_416369.1" /db_xref="GI:16129808" /db_xref="ASAP:ABE-0006185" /db_xref="UniProtKB/Swiss-Prot:P24205" /db_xref="EcoGene:EG10614" /db_xref="GeneID:945143" /translation="METKKNNSEYIPEFDKSFRHPRYWGAWLGVAAMAGIALTPPKFR DPILARLGRFAGRLGKSSRRRALINLSLCFPERSEAEREAIVDEMFATAPQAMAMMAE LAIRGPEKIQPRVDWQGLEIIEEMRRNNEKVIFLVPHGWAVDIPAMLMASQGQKMAAM FHNQGNPVFDYVWNTVRRRFGGRLHARNDGIKPFIQSVRQGYWGYYLPDQDHGPEHSE FVDFFATYKATLPAIGRLMKVCRARVVPLFPIYDGKTHRLTIQVRPPMDDLLEADDHT IARRMNEEVEIFVGPRPEQYTWILKLLKTRKPGEIQPYKRKDLYPIK" gene complement(1940313..1941635) /gene="mepM" /locus_tag="b1856" /gene_synonym="ECK1857; JW5304; yebA" /db_xref="EcoGene:EG10013" /db_xref="GeneID:946376" CDS complement(1940313..1941635) /gene="mepM" /locus_tag="b1856" /gene_synonym="ECK1857; JW5304; yebA" /function="enzyme; Murein sacculus, peptidoglycan" /codon_start=1 /transl_table=11 /product="murein DD-endopeptidase, space-maker hydrolase, septation protein" /protein_id="NP_416370.2" /db_xref="GI:90111345" /db_xref="ASAP:ABE-0006189" /db_xref="UniProtKB/Swiss-Prot:P0AFS9" /db_xref="EcoGene:EG10013" /db_xref="GeneID:946376" /translation="MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRD ATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAIPQDELDDKIAGEAGVHEYVVST GDTLSSILNQYGIDMGDITQLAAADKELRNLKIGQQLSWTLTADGELQRLTWEVSRRE TRTYDRTAANGFKMTSEMQQGEWVNNLLKGTVGGSFVASARNAGLTSAEVSAVIKAMQ WQMDFRKLKKGDEFAVLMSREMLDGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRN GTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVGDGE VVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGP HLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREFLAQAKEIVPQLRFD" gene complement(1941651..1942583) /gene="znuA" /locus_tag="b1857" /gene_synonym="ECK1858; JW5831; yebL; yzzP" /db_xref="EcoGene:EG12678" /db_xref="GeneID:946375" CDS complement(1941651..1942583) /gene="znuA" /locus_tag="b1857" /gene_synonym="ECK1858; JW5831; yebL; yzzP" /function="putative factor; Not classified" /GO_component="GO:0042597 - periplasmic space" /codon_start=1 /transl_table=11 /product="zinc ABC transporter periplasmic binding protein" /protein_id="NP_416371.4" /db_xref="GI:90111346" /db_xref="ASAP:ABE-0006191" /db_xref="UniProtKB/Swiss-Prot:P39172" /db_xref="EcoGene:EG12678" /db_xref="GeneID:946375" /translation="MLHKKTLLFAALSAALWGGATQAADAAVVASLKPVGFIASAIAD GVTETEVLLPDGASEHDYSLRPSDVKRLQNADLVVWVGPEMEAFMQKPVSKLPGAKQV TIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMHLWLSPEIARATAVAIHG KLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFG LTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMG TLDPLGTNIKLGKTSYSEFLSQLANQYASCLKGD" gene 1942662..1943417 /gene="znuC" /locus_tag="b1858" /gene_synonym="ECK1859; JW1847; yebM" /db_xref="EcoGene:EG13132" /db_xref="GeneID:946374" CDS 1942662..1943417 /gene="znuC" /locus_tag="b1858" /gene_synonym="ECK1859; JW1847; yebM" /function="putative transport; Not classified" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="zinc ABC transporter ATPase" /protein_id="NP_416372.1" /db_xref="GI:16129811" /db_xref="ASAP:ABE-0006198" /db_xref="UniProtKB/Swiss-Prot:P0A9X1" /db_xref="EcoGene:EG13132" /db_xref="GeneID:946374" /translation="MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKS TLVRVVLGLVTPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTHKEDIL PALKRVQAGHLINAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALY DLIDQLRRELDCGVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVSLHPEFISMFG PRGAEQLGIYRHHHNHRHDLQGRIVLRRGNDRS" gene 1943414..1944199 /gene="znuB" /locus_tag="b1859" /gene_synonym="ECK1860; JW1848; yebI" /db_xref="EcoGene:EG12368" /db_xref="GeneID:946372" CDS 1943414..1944199 /gene="znuB" /locus_tag="b1859" /gene_synonym="ECK1860; JW1848; yebI" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="zinc ABC transporter permease" /protein_id="NP_416373.1" /db_xref="GI:16129812" /db_xref="ASAP:ABE-0006201" /db_xref="UniProtKB/Swiss-Prot:P39832" /db_xref="EcoGene:EG12368" /db_xref="GeneID:946372" /translation="MIELLFPGWLAGIMLACAAGPLGSFVVWRRMSYFGDTLAHASLL GVAFGLLLDVNPFYAVIAVTLLLAGGLVWLEKRPQLAIDTLLGIMAHSALSLGLVVVS LMSNIRVDLMAYLFGDLLAVTPEDLISIAIGVVIVVAILFWQWRNLLSMTISPDLAFV DGVKLQRVKLLLMLVTALTIGVAMKFVGALIITSLLIIPAATARRFARTPEQMAGVAV LVGMVAVTGGLTFSAVYDTPAGPSVVLCAALLFILSMMKKQAS" repeat_region 1944219..1944345 /note="REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences" gene complement(1944346..1945356) /gene="ruvB" /locus_tag="b1860" /gene_synonym="ECK1861; JW1849" /db_xref="EcoGene:EG10924" /db_xref="GeneID:946371" CDS complement(1944346..1945356) /gene="ruvB" /locus_tag="b1860" /gene_synonym="ECK1861; JW1849" /EC_number="3.1.22.4" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006310 - DNA recombination; GO:0006281 - DNA repair; GO:0009432 - SOS response" /note="Holliday junction helicase subunit A; branch migration; repair" /codon_start=1 /transl_table=11 /product="ATP-dependent DNA helicase, component of RuvABC resolvasome" /protein_id="NP_416374.1" /db_xref="GI:16129813" /db_xref="ASAP:ABE-0006204" /db_xref="UniProtKB/Swiss-Prot:P0A812" /db_xref="EcoGene:EG10924" /db_xref="GeneID:946371" /translation="MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIF IKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLT NLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARG TPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKF FGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE MP" gene complement(1945365..1945976) /gene="ruvA" /locus_tag="b1861" /gene_synonym="ECK1862; JW1850" /db_xref="EcoGene:EG10923" /db_xref="GeneID:946369" CDS complement(1945365..1945976) /gene="ruvA" /locus_tag="b1861" /gene_synonym="ECK1862; JW1850" /EC_number="3.1.22.4" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006310 - DNA recombination; GO:0006281 - DNA repair; GO:0009432 - SOS response" /note="Holliday junction helicase subunit B; branch migration; repair" /codon_start=1 /transl_table=11 /product="component of RuvABC resolvasome, regulatory subunit" /protein_id="NP_416375.1" /db_xref="GI:16129814" /db_xref="ASAP:ABE-0006206" /db_xref="UniProtKB/Swiss-Prot:P0A809" /db_xref="EcoGene:EG10923" /db_xref="GeneID:946369" /translation="MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQE AIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAV EREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAE QEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL" gene complement(1946115..1946180) /gene="yobI" /locus_tag="b4677" /gene_synonym="ECK4492" /db_xref="EcoGene:EG14482" /db_xref="GeneID:7751641" CDS complement(1946115..1946180) /gene="yobI" /locus_tag="b4677" /gene_synonym="ECK4492" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_002791244.1" /db_xref="GI:226524725" /db_xref="UniProtKB/Swiss-Prot:C1P604" /db_xref="EcoGene:EG14482" /db_xref="GeneID:7751641" /translation="MYIFITHFFTEYVILKYLLPI" gene 1946251..1946853 /gene="yebB" /locus_tag="b1862" /gene_synonym="ECK1863; JW5306" /db_xref="EcoGene:EG11136" /db_xref="GeneID:946377" CDS 1946251..1946853 /gene="yebB" /locus_tag="b1862" /gene_synonym="ECK1863; JW5306" /codon_start=1 /transl_table=11 /product="DUF830 family protein" /protein_id="NP_416376.2" /db_xref="GI:90111347" /db_xref="ASAP:ABE-0006213" /db_xref="UniProtKB/Swiss-Prot:P24238" /db_xref="EcoGene:EG11136" /db_xref="GeneID:946377" /translation="MNINYPAEYEIGDIVFTCIGAALFGQISAASNCWSNHVGIIIGH NGEDFLVAESRVPLSTITTLSRFIKRSSNQRYAIKRLDAGLTERQKQRIVEQVPSRLR KLYHTGFKYESSRQFCSKFVFDIYKEALCIPVGEIETFGELLNSNPNAKLTFWKFWFL GSIPWERKTVTPASLWHHPGLVLIHAEGVETPQPELTEAV" gene complement(1946855..1947376) /gene="ruvC" /locus_tag="b1863" /gene_synonym="ECK1864; JW1852" /db_xref="EcoGene:EG10925" /db_xref="GeneID:946378" CDS complement(1946855..1947376) /gene="ruvC" /locus_tag="b1863" /gene_synonym="ECK1864; JW1852" /EC_number="3.1.22.4" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006310 - DNA recombination; GO:0006281 - DNA repair" /note="Holliday junction nuclease; resolution of structures; repair" /codon_start=1 /transl_table=11 /product="component of RuvABC resolvasome, endonuclease" /protein_id="NP_416377.1" /db_xref="GI:16129816" /db_xref="ASAP:ABE-0006215" /db_xref="UniProtKB/Swiss-Prot:P0A814" /db_xref="EcoGene:EG10925" /db_xref="GeneID:946378" /translation="MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSR LKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY AARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQM SESRLNLARGRLR" gene complement(1947411..1948151) /gene="yebC" /locus_tag="b1864" /gene_synonym="ECK1865; JW1853" /db_xref="EcoGene:EG11137" /db_xref="GeneID:946379" CDS complement(1947411..1948151) /gene="yebC" /locus_tag="b1864" /gene_synonym="ECK1865; JW1853" /codon_start=1 /transl_table=11 /product="UPF0082 family protein" /protein_id="NP_416378.1" /db_xref="GI:16129817" /db_xref="ASAP:ABE-0006219" /db_xref="UniProtKB/Swiss-Prot:P0A8A0" /db_xref="EcoGene:EG11137" /db_xref="GeneID:946379" /translation="MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPD ANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECL SDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAE DVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMR LIDMLEDCDDVQEVYHNGEISDEVAATL" gene complement(1948180..1948632) /gene="nudB" /locus_tag="b1865" /gene_synonym="ECK1866; JW1854; ntpA; orf17; yebD" /db_xref="EcoGene:EG11138" /db_xref="GeneID:946383" CDS complement(1948180..1948632) /gene="nudB" /locus_tag="b1865" /gene_synonym="ECK1866; JW1854; ntpA; orf17; yebD" /EC_number="3.6.1.-" /function="enzyme; folate metabolism" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="dihydroneopterin triphosphate pyrophosphatase" /protein_id="NP_416379.1" /db_xref="GI:16129818" /db_xref="ASAP:ABE-0006223" /db_xref="UniProtKB/Swiss-Prot:P0AFC0" /db_xref="EcoGene:EG11138" /db_xref="GeneID:946383" /translation="MKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVE EGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTESW FCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINAA" gene complement(1948750..1950522) /gene="aspS" /locus_tag="b1866" /gene_synonym="ECK1867; JW1855; tls" /db_xref="EcoGene:EG10097" /db_xref="GeneID:946385" CDS complement(1948750..1950522) /gene="aspS" /locus_tag="b1866" /gene_synonym="ECK1867; JW1855; tls" /EC_number="6.1.1.12" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /experiment="N-terminus verified by Edman degradation: PMID 2129559" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="aspartate tRNA synthetase" /codon_start=1 /transl_table=11 /product="aspartyl-tRNA synthetase" /protein_id="NP_416380.1" /db_xref="GI:16129819" /db_xref="ASAP:ABE-0006226" /db_xref="UniProtKB/Swiss-Prot:P21889" /db_xref="EcoGene:EG10097" /db_xref="GeneID:946385" /translation="MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI VQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTII NRADVLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDI ETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRD EDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAE RRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQI DEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMI FFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHP FTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEE EQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTE APSFANPTALAELSIQVVKKAENN" gene 1950832..1951398 /gene="yecD" /locus_tag="b1867" /gene_synonym="ECK1868; JW5307" /db_xref="EcoGene:EG12378" /db_xref="GeneID:946384" CDS 1950832..1951398 /gene="yecD" /locus_tag="b1867" /gene_synonym="ECK1868; JW5307" /codon_start=1 /transl_table=11 /product="isochorismatase family protein" /protein_id="NP_416381.2" /db_xref="GI:90111348" /db_xref="ASAP:ABE-0006231" /db_xref="UniProtKB/Swiss-Prot:P0ADI7" /db_xref="EcoGene:EG12378" /db_xref="GeneID:946384" /translation="MLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKF RASGQPVFLVRVGWSADYAEALKQPVDAPSPAKVLPENWWQHPAALGATDSDIEIIKR QWGAFYGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAAS AEQHNNSINHIYPRIARVRSVEEILNAL" gene 1951395..1952213 /gene="yecE" /locus_tag="b1868" /gene_synonym="ECK1869; JW1857" /db_xref="EcoGene:EG12379" /db_xref="GeneID:946382" CDS 1951395..1952213 /gene="yecE" /locus_tag="b1868" /gene_synonym="ECK1869; JW1857" /codon_start=1 /transl_table=11 /product="UPF0759 family protein" /protein_id="NP_416382.1" /db_xref="GI:16129821" /db_xref="ASAP:ABE-0006233" /db_xref="UniProtKB/Swiss-Prot:P37348" /db_xref="EcoGene:EG12379" /db_xref="GeneID:946382" /translation="MIYIGLPQWSHPKWVRLGITSLEEYARHFNCVEGNTTLYALPKP EVVLRWREQTTDDFRFCFKFPATISHQAALRHCDDLVTEFLTRMSPLAPRIGQYWLQL PATFGPRELPALWHFLDSLPGEFNYGVEVRHPQFFAKGEEEQTLNRGLHQRGVNRVIL DSRPVHAARPHSEAIRDAQRKKPKVPVHAVLTATNPLIRFIGSDDMTQNRELFQVWLQ KLAQWHQTTTPYLFLHTPDIAQAPELVHTLWEDLRKTLPEIGAVPAIPQQSSLF" gene 1952266..1952661 /gene="yecN" /locus_tag="b1869" /gene_synonym="ECK1870; JW5308" /db_xref="EcoGene:EG14032" /db_xref="GeneID:946381" CDS 1952266..1952661 /gene="yecN" /locus_tag="b1869" /gene_synonym="ECK1870; JW5308" /codon_start=1 /transl_table=11 /product="MAPEG family inner membrane protein" /protein_id="NP_416383.4" /db_xref="GI:90111349" /db_xref="ASAP:ABE-0006235" /db_xref="UniProtKB/Swiss-Prot:P64515" /db_xref="EcoGene:EG14032" /db_xref="GeneID:946381" /translation="MVSALYAVLSALLLMKFSFDVVRLRMQYRVAYGDGGFSELQSAI RIHGNAVEYIPIAIVLMLFMEMNGAETWMVHICGIVLLAGRLMHYYGFHHRLFRWRRS GMSATWCALLLMVLANLWYMPWELVFSLR" gene 1952702..1953445 /gene="cmoA" /locus_tag="b1870" /gene_synonym="ECK1871; JW1859; yecO" /db_xref="EcoGene:EG14033" /db_xref="GeneID:946380" CDS 1952702..1953445 /gene="cmoA" /locus_tag="b1870" /gene_synonym="ECK1871; JW1859; yecO" /function="enzyme; tRNA modification" /codon_start=1 /transl_table=11 /product="carboxy-SAM synthase" /protein_id="NP_416384.1" /db_xref="GI:16129823" /db_xref="ASAP:ABE-0006237" /db_xref="UniProtKB/Swiss-Prot:P76290" /db_xref="EcoGene:EG14033" /db_xref="GeneID:946380" /translation="MSHRDTLFSAPIARLGDWTFDERVAEVFPDMIQRSVPGYSNIIS MIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHI DAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGAL VLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARL HNAGFEHSELWFQCFNFGSLVALKAEDAA" gene 1953442..1954413 /gene="cmoB" /locus_tag="b1871" /gene_synonym="ECK1872; JW1860; yecP" /db_xref="EcoGene:EG14034" /db_xref="GeneID:946387" CDS 1953442..1954413 /gene="cmoB" /locus_tag="b1871" /gene_synonym="ECK1872; JW1860; yecP" /function="enzyme; tRNA modification" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="tRNA (cmo5U34)-carboxymethyltransferase, carboxy-SAM-dependent" /protein_id="NP_416385.1" /db_xref="GI:16129824" /db_xref="ASAP:ABE-0006241" /db_xref="UniProtKB/Swiss-Prot:P76291" /db_xref="EcoGene:EG14034" /db_xref="GeneID:946387" /translation="MIDFGNFYSLIAKNHLSHWLETLPAQIANWQREQQHGLFKQWSN AVEFLPEIKPYRLDLLHSVTAESEEPLSAGQIKRIETLMRNLMPWRKGPFSLYGVNID TEWRSDWKWDRVLPHLSDLTGRTILDVGCGSGYHMWRMIGAGAHLAVGIDPTQLFLCQ FEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYHRRSPLEHLWQLKDQLVN EGELVLETLVIDGDENTVLVPGDRYAQMRNVYFIPSALALKNWLKKCGFVDIRIADVS VTTTEEQRRTEWMVTESLADFLDPHDPGKTVEGYPAPKRAVLIARKP" repeat_region 1954429..1954526 /note="RIP139 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(1954578..1957007) /gene="torZ" /locus_tag="b1872" /gene_synonym="bisZ; ECK1873; JW1861" /db_xref="EcoGene:EG13276" /db_xref="GeneID:946389" CDS complement(1954578..1957007) /gene="torZ" /locus_tag="b1872" /gene_synonym="bisZ; ECK1873; JW1861" /EC_number="1.6.6.9" /function="enzyme; Central intermediary metabolism" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="trimethylamine N-oxide reductase system III, catalytic subunit" /protein_id="NP_416386.4" /db_xref="GI:90111350" /db_xref="ASAP:ABE-0006244" /db_xref="UniProtKB/Swiss-Prot:P46923" /db_xref="EcoGene:EG13276" /db_xref="GeneID:946389" /translation="MTLTRREFIKHSGIAAGALVVTSAAPLPAWAEEKGGKILTAGRW GAMNVEVKDGKIVSSTGALAKTIPNSLQSTAADQVHTTARIQHPMVRKSYLDNPLQPA KGRGEDTYVQVSWEQALKLIHEQHDRIRKANGPSAIFAGSYGWRSSGVLHKAQTLLQR YMNLAGGYSGHSGDYSTGAAQVIMPHVVGSVEVYEQQTSWPLILENSQVVVLWGMNPL NTLKIAWSSTDEQGLEYFHQLKKSGKPVIAIDPIRSETIEFFDDNATWIAPNMGTDVA LMLGIAHTLMTQGKHDKVFLEKYTTGYPQFEEYLTGKSDNTPKSAVWAAEITGVPEAQ IVKLAELMAANRTMLMAGWGIQRQQYGEQKHWMLVTLAAMLGQIGTPGGGFGFSYHYS NGGNPTRVGGVLPEMSAAIAGHASEAADDGGMTAIPVARIVDALENPGGKYQHNGKEQ TYPNIKMIWWAGGGNFTHHQDTNRLIKAWQKPEMIVVSECYWTAAAKHADIVLPITTS FERNDLTMTGDYSNQHIVPMKQAVAPQFEARNDFDVFADLAELLKPGGKEIYTEGKDE MAWLKFFYDAAQKGARAQRVTMPMFNAFWQQNKLIEMRHSEKNEQYVRYGDFRADPVK NALGTPSGKIEIYSKTLEKFGYKDCPAHPTWLAPDEWKGTADEKQLQLLTAHPAHRLH SQLNYAELRKKYAIADREPITIHTEDAARFGIANGDLVRVWNKRGQILTGAVVTDGIK KGVVCVHEGAWPDLENGLCKNGSANVLTADIPSSQLANACAGNSALVYIEKYTGNAPK LTAFDQPAVQA" gene complement(1957032..1958132) /gene="torY" /locus_tag="b1873" /gene_synonym="ECK1874; JW1862; yecK" /db_xref="EcoGene:EG13277" /db_xref="GeneID:946490" CDS complement(1957032..1958132) /gene="torY" /locus_tag="b1873" /gene_synonym="ECK1874; JW1862; yecK" /function="putative enzyme; Not classified" /GO_function="GO:0009055 - electron carrier activity" /codon_start=1 /transl_table=11 /product="TMAO reductase III (TorYZ), cytochrome c-type subunit" /protein_id="NP_416387.1" /db_xref="GI:16129826" /db_xref="ASAP:ABE-0006246" /db_xref="UniProtKB/Swiss-Prot:P52005" /db_xref="EcoGene:EG13277" /db_xref="GeneID:946490" /translation="MRGKKRIGLLFLLIAVVVGGGGLLLAQKVLHKTSDTAFCLSCHS MSKPFEEYQGTVHFSNQKGIRAECADCHIPKSGMDYLFAKLKASKDIYHEFVSGKIDS DDKFEAHRQEMAETVWKELKATDSATCRSCHSFDAMDIASQSESAQKMHNKAQKDSET CIDCHKGIAHFPPEIKMDDNAAHELESQAATSVTNGAHIYPFKTSHIGELATVNPGTD LTVVDASGKQPIVLLQGYQMQGSENTLYLAAGQRLALATLSEEGIKALTVNGEWQADE YGNQWRQASLQGALTDPALADRKPLWQYAEKLDDTYCAGCHAPIAADHYTVNAWPSIA KGMGARTSMSENELDILTRYFQYNAKDITEKQ" gene complement(1958520..1959266) /gene="cutC" /locus_tag="b1874" /gene_synonym="dinY?; ECK1875; JW1863" /db_xref="EcoGene:EG12956" /db_xref="GeneID:2847756" CDS complement(1958520..1959266) /gene="cutC" /locus_tag="b1874" /gene_synonym="dinY?; ECK1875; JW1863" /function="putative transport; Detoxification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006805 - xenobiotic metabolic process" /codon_start=1 /transl_table=11 /product="copper homeostasis protein" /protein_id="YP_025309.2" /db_xref="GI:90111351" /db_xref="ASAP:ABE-0006252" /db_xref="UniProtKB/Swiss-Prot:P67826" /db_xref="EcoGene:EG12956" /db_xref="GeneID:2847756" /translation="MALLEICCYSMECALTAQQNGADRVELCAAPKEGGLTPSLGVLK SVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVD MPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKSDALQGLSK IMELIAHRDAPIIMAGAGVRAENLHHFLDAGVLEVHSSAGAWQASPMRYRNQGLSMSS DEHADEYSRYIVDGAAVAEMKGIIERHQAK" gene complement(1959280..1959846) /gene="yecM" /locus_tag="b1875" /gene_synonym="ECK1876; JW5309; yecL" /db_xref="EcoGene:EG13405" /db_xref="GeneID:946415" CDS complement(1959280..1959846) /gene="yecM" /locus_tag="b1875" /gene_synonym="ECK1876; JW5309; yecL" /codon_start=1 /transl_table=11 /product="putative metal-binding enzyme" /protein_id="NP_416389.4" /db_xref="GI:90111352" /db_xref="ASAP:ABE-0006257" /db_xref="UniProtKB/Swiss-Prot:P52007" /db_xref="EcoGene:EG13405" /db_xref="GeneID:946415" /translation="MANWQSIDELQDIASDLPRFIHALDELSRRLGLNITPLTADHIS LRCHQNATAERWRRGFEQCGELLSENMINGRPICLFKLHEPVQVAHWQFSIVELPWPG EKRYPHEGWEHIEIVLPGDPETLNARALALLSDEGLSLPGISVKTSSPKGEHERLPNP TLAVTDGKTTIKFHPWSIEEIVASEQSA" gene 1960062..1961795 /gene="argS" /locus_tag="b1876" /gene_synonym="ECK1877; JW1865; lov" /db_xref="EcoGene:EG10071" /db_xref="GeneID:946452" CDS 1960062..1961795 /gene="argS" /locus_tag="b1876" /gene_synonym="ECK1877; JW1865; lov" /EC_number="6.1.1.19" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /experiment="N-terminus verified by Edman degradation: PMID 2668891" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="arginine tRNA synthetase" /codon_start=1 /transl_table=11 /product="arginyl-tRNA synthetase" /protein_id="NP_416390.1" /db_xref="GI:16129828" /db_xref="ASAP:ABE-0006264" /db_xref="UniProtKB/Swiss-Prot:P11875" /db_xref="EcoGene:EG10071" /db_xref="GeneID:946452" /translation="MNIQALLSEKVRQAMIAAGAPADCEPQVRQSAKVQFGDYQANGM MAVAKKLGMAPRQLAEQVLTHLDLNGIASKVEIAGPGFINIFLDPAFLAEHVQQALAS DRLGVATPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHKVIRANHVG DWGTQFGMLIAWLEKQQQENAGEMELADLEGFYRDAKKHYDEDEEFAERARNYVVKLQ SGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKG LAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLYTTTDIACAKYRYETLHADRVL YYIDSRQHQHLMQAWAIVRKAGYVPESVPLEHHMFGMMLGKDGKPFKTRAGGTVKLAD LLDEALERARRLVAEKNPDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNML AFEGNTAPYMQYAYTRVLSVFRKAEIDEEQLAAAPVIIREDREAQLAARLLQFEETLT VVAREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENEEVRNSRLKLAQLTAKTLKLGL DTLGIETVERM" gene 1961972..1962460 /gene="yecT" /locus_tag="b1877" /gene_synonym="ECK1878; JW5310" /db_xref="EcoGene:EG14316" /db_xref="GeneID:946511" CDS 1961972..1962460 /gene="yecT" /locus_tag="b1877" /gene_synonym="ECK1878; JW5310" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416391.4" /db_xref="GI:90111353" /db_xref="ASAP:ABE-0006268" /db_xref="UniProtKB/Swiss-Prot:P76296" /db_xref="EcoGene:EG14316" /db_xref="GeneID:946511" /translation="MFKFLVLTLGIISCQAYAEDTVIVNDHDISAIKDCWQKNSDDDT DVNVIKSCLRQEYNLVDAQLNKAYGEAYRYIEQVPRTGVKKPDTEQLNLLKKSQRAWL DFRDKECELILSNEDVQDLSDPYSESEWLSCMIIQTNTRTRQLQLYRNSEDFYPSPLT RG" gene complement(1962580..1962972) /gene="flhE" /locus_tag="b1878" /gene_synonym="ECK1879; JW1867" /db_xref="EcoGene:EG14013" /db_xref="GeneID:946094" CDS complement(1962580..1962972) /gene="flhE" /locus_tag="b1878" /gene_synonym="ECK1879; JW1867" /function="structural component; Surface structures" /note="flagellar protein" /codon_start=1 /transl_table=11 /product="proton seal during flagellar secretion" /protein_id="NP_416392.1" /db_xref="GI:16129830" /db_xref="ASAP:ABE-0006270" /db_xref="UniProtKB/Swiss-Prot:P76297" /db_xref="EcoGene:EG14013" /db_xref="GeneID:946094" /translation="MRTLLAILLFPLLVQAAGEGMWQASSVGITLNHRGESMSSAPLS TRQPASGLMTLVAWRYQLIGPTPSGLRVRLCSQSRCVELEGQSGTTVAFSGIAAAEPL RFIWEVPGGGRLIPPLKVQRNEVIVNYR" gene complement(1962972..1965050) /gene="flhA" /locus_tag="b1879" /gene_synonym="ECK1880; flaH; JW1868" /db_xref="EcoGene:EG14273" /db_xref="GeneID:946390" CDS complement(1962972..1965050) /gene="flhA" /locus_tag="b1879" /gene_synonym="ECK1880; flaH; JW1868" /function="putative structural component; Surface structures" /GO_component="GO:0019861 - flagellum; GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis; possible export of flagellar proteins" /codon_start=1 /transl_table=11 /product="putative flagellar export pore protein" /protein_id="NP_416393.1" /db_xref="GI:16129831" /db_xref="ASAP:ABE-0006272" /db_xref="UniProtKB/Swiss-Prot:P76298" /db_xref="EcoGene:EG14273" /db_xref="GeneID:946390" /translation="MSNLAAMLRLPANLKSTQWQILAGPILILLILSMMVLPLPAFIL DLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHT GAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGM PGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVI NIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQD VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLAWWIRGREQKA PAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRK KFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLP GEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQHAAELFGRQE AQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTILETLAEHAP IQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGGGLEPGL ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRH IRMTATIGGK" gene complement(1965043..1966191) /gene="flhB" /locus_tag="b1880" /gene_synonym="ECK1881; flaG; JW1869; yecQ" /db_xref="EcoGene:EG14035" /db_xref="GeneID:946391" CDS complement(1965043..1966191) /gene="flhB" /locus_tag="b1880" /gene_synonym="ECK1881; flaG; JW1869; yecQ" /function="structural component; Not classified" /GO_component="GO:0019861 - flagellum; GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative part of export apparatus for flagellar proteins" /codon_start=1 /transl_table=11 /product="flagellin export apparatus, substrate specificity protein" /protein_id="NP_416394.1" /db_xref="GI:16129832" /db_xref="ASAP:ABE-0006275" /db_xref="UniProtKB/Swiss-Prot:P76299" /db_xref="EcoGene:EG14035" /db_xref="GeneID:946391" /translation="MSDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSV IWFGGVSLARRLSGMLSAGLHFDHSIINDPNLILGQIILLIREAMLALLPLISGVVLV ALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAILKTILVGSVTG FFLWHHWPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKK LRMSRQDIRDEFKQSEGDPHVKGRIRQMQRAAARRRMMADVPKADVIVNNPTHYSVAL QYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQ LYAAVAEVLAWVWQLKRWRLAGGQRPVQPTHLPVPEALDFINEKPTHE" repeat_region 1966322..1966384 /note="REP140 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(1966393..1967037) /gene="cheZ" /locus_tag="b1881" /gene_synonym="ECK1882; JW1870" /db_xref="EcoGene:EG10151" /db_xref="GeneID:946392" CDS complement(1966393..1967037) /gene="cheZ" /locus_tag="b1881" /gene_synonym="ECK1882; JW1870" /function="regulator; Chemotaxis and mobility" /GO_process="GO:0006464 - protein modification process; GO:0042330 - taxis" /note="chemotactic response; CheY protein phophatase; antagonist of CheY as switch regulator" /codon_start=1 /transl_table=11 /product="chemotaxis regulator, protein phosphatase for CheY" /protein_id="NP_416395.1" /db_xref="GI:16129833" /db_xref="ASAP:ABE-0006278" /db_xref="UniProtKB/Swiss-Prot:P0A9H9" /db_xref="EcoGene:EG10151" /db_xref="GeneID:946392" /translation="MMQPSIKPADEHSAGDIIARIGSLTRMLRDSLRELGLDQAIAEA AEAIPDARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPI DLADARELVTDTRQFLADVPAHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIE RQLLMVLLENIPEQESRPKRENQSLLNGPQVDTSKAGVVASQDQVDDLLDSLGF" gene complement(1967048..1967437) /gene="cheY" /locus_tag="b1882" /gene_synonym="ECK1883; JW1871" /db_xref="EcoGene:EG10150" /db_xref="GeneID:946393" CDS complement(1967048..1967437) /gene="cheY" /locus_tag="b1882" /gene_synonym="ECK1883; JW1871" /function="regulator; Chemotaxis and mobility" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0042330 - taxis" /note="chemotaxis regulator transmits chemoreceptor signals to flagelllar motor components" /codon_start=1 /transl_table=11 /product="chemotaxis regulator transmitting signal to flagellar motor component" /protein_id="NP_416396.1" /db_xref="GI:16129834" /db_xref="ASAP:ABE-0006280" /db_xref="UniProtKB/Swiss-Prot:P0AE67" /db_xref="EcoGene:EG10150" /db_xref="GeneID:946393" /translation="MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALN KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAG ASGYVVKPFTAATLEEKLNKIFEKLGM" gene complement(1967452..1968501) /gene="cheB" /locus_tag="b1883" /gene_synonym="ECK1884; JW1872" /db_xref="EcoGene:EG10147" /db_xref="GeneID:946394" CDS complement(1967452..1968501) /gene="cheB" /locus_tag="b1883" /gene_synonym="ECK1884; JW1872" /EC_number="3.1.1.61" /function="enzyme; Chemotaxis and mobility" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006464 - protein modification process; GO:0042330 - taxis" /note="response regulator for chemotaxis (cheA sensor); protein methylesterase" /codon_start=1 /transl_table=11 /product="fused chemotaxis regulator: protein-glutamate methylesterase in two-component regulatory system with CheA" /protein_id="NP_416397.1" /db_xref="GI:16129835" /db_xref="ASAP:ABE-0006284" /db_xref="UniProtKB/Swiss-Prot:P07330" /db_xref="EcoGene:EG10147" /db_xref="GeneID:946394" /translation="MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDL IKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAI DFVTKPQLGIREGMLAYNEMIAEKVRTAAKASLAAHKPLSAPTTLKAGPLLSSEKLIA IGASTGGTEAIRHVLQPLPLSSPALLITQHMPPGFTRSFADRLNKLCQIGVKEAEDGE RVLPGHAYIAPGDRHMELSRSGANYQIKIHDGPAVNRHRPSVDVLFHSVAKQAGRNAV GVILTGMGNDGAAGMLAMRQAGAWTLAQNEASCVVFGMPREAINMGGVCEVVDLSQVS QQMLAKISAGQAIRI" gene complement(1968504..1969364) /gene="cheR" /locus_tag="b1884" /gene_synonym="cheX; ECK1885; JW1873" /db_xref="EcoGene:EG10148" /db_xref="GeneID:946396" CDS complement(1968504..1969364) /gene="cheR" /locus_tag="b1884" /gene_synonym="cheX; ECK1885; JW1873" /EC_number="2.1.1.80" /function="enzyme; Chemotaxis and mobility" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006464 - protein modification process; GO:0042330 - taxis" /note="response regulator for chemotaxis; protein glutamate methyltransferase" /codon_start=1 /transl_table=11 /product="chemotaxis regulator, protein-glutamate methyltransferase" /protein_id="NP_416398.1" /db_xref="GI:16129836" /db_xref="ASAP:ABE-0006286" /db_xref="UniProtKB/Swiss-Prot:P07364" /db_xref="EcoGene:EG10148" /db_xref="GeneID:946396" /translation="MTSSLPCGQTSLLLQMTERLALSDAHFRRISQLIYQRAGIVLAD HKRDMVYNRLVRRLRSLGLTDFGHYLNLLESNQHSGEWQAFINSLTTNLTAFFREAHH FPLLADHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVL EKARSGIYRHEELKNLTPQQLQRYFMRGTGPHEGLVRVRQELANYVDFAPLNLLAKQY TVPGPFDAIFCRNVMIYFDQTTQQEILRRFVPLLKPDGLLFAGHSENFSHLERRFTLR GQTVYALSKD" gene complement(1969383..1970984) /gene="tap" /locus_tag="b1885" /gene_synonym="ECK1886; JW1874" /db_xref="EcoGene:EG10987" /db_xref="GeneID:946397" CDS complement(1969383..1970984) /gene="tap" /locus_tag="b1885" /gene_synonym="ECK1886; JW1874" /function="regulator; Chemotaxis and mobility" /GO_component="GO:0019866 - organelle inner membrane" /GO_process="GO:0042330 - taxis" /note="methyl-accepting chemotaxis protein IV, peptide sensor receptor" /codon_start=1 /transl_table=11 /product="methyl-accepting protein IV" /protein_id="NP_416399.1" /db_xref="GI:16129837" /db_xref="ASAP:ABE-0006288" /db_xref="UniProtKB/Swiss-Prot:P07018" /db_xref="EcoGene:EG10987" /db_xref="GeneID:946397" /translation="MFNRIRISTTLFLILILCGILQIGSNGMSFWAFRDDLQRLNQVE QSNQQRAALAQTRAVMLQASTALNKAGTLTALSYPADDIKTLMTTARASLTQSTTLFK SFMAMTAGNEHVRGLQKETEKSFARWHNDLEHQATWLESNQLSDFLTAPVQGSQNAFD VNFEAWQLEINHVLEAASAQSQRNYQISALVFISMIIVAAIYISSALWWTRKMIVQPL AIIGSHFDSIAAGNLARPIAVYGRNEITAIFASLKTMQQALRGTVSDVRKGSQEMHIG IAEIVAGNNDLSSRTEQQAASLAQTAASMEQLTATVGQNADNARQASELAKNAATTAQ AGGVQVSTMTHTMQEIATSSQKIGDIISVIDGIAFQTNILALNAAVEAARAGEQGRGF AVVAGEVRNLASRSAQAAKEIKGLIEESVNRVQQGSKLVNNAAATMIDIVSSVTRVND IMGEIASASEEQQRGIEQVAQAVSQMDQVTQQNASLVEEAAVATEQLANQADHLSSRV AVFTLEEHEVARHESVQLQIAPVVS" gene complement(1971030..1972691) /gene="tar" /locus_tag="b1886" /gene_synonym="cheM; ECK1887; JW1875" /db_xref="EcoGene:EG10988" /db_xref="GeneID:946399" CDS complement(1971030..1972691) /gene="tar" /locus_tag="b1886" /gene_synonym="cheM; ECK1887; JW1875" /function="regulator; Chemotaxis and mobility" /GO_component="GO:0019866 - organelle inner membrane" /GO_process="GO:0042330 - taxis" /note="methyl-accepting chemotaxis protein II, aspartate sensor receptor" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein II" /protein_id="NP_416400.1" /db_xref="GI:16129838" /db_xref="ASAP:ABE-0006290" /db_xref="UniProtKB/Swiss-Prot:P07017" /db_xref="EcoGene:EG10988" /db_xref="GeneID:946399" /translation="MINRIRVVTLLVMVLGVFALLQLISGSLFFSSLHHSQKSFVVSN QLREQQGELTSTWDLMLQTRINLSRSAVRMMMDSSNQQSNAKVELLDSARKTLAQAAT HYKKFKSMAPLPEMVATSRNIDEKYKNYYTALTELIDYLDYGNTGAYFAQPTQGMQNA MGEAFAQYALSSEKLYRDIVTDNADDYRFAQWQLAVIALVVVLILLVAWYGIRRMLLT PLAKIIAHIREIAGGNLANTLTIDGRSEMGDLAQSVSHMQRSLTDTVTHVREGSDAIY AGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSASDT AQHGGKVVDGVVKTMHEIADSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGR GFAVVAGEVRNLASRSAQAAKEIKALIEDSVSRVDTGSVLVESAGETMNNIVNAVTRV TDIMGEIASASDEQSRGIDQVALAVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQ AVSAFRLAASPLTNKPQTPSRPASEQPPAQPRLRIAEQDPNWETF" gene complement(1972836..1973339) /gene="cheW" /locus_tag="b1887" /gene_synonym="ECK1888; JW1876" /db_xref="EcoGene:EG10149" /db_xref="GeneID:946400" CDS complement(1972836..1973339) /gene="cheW" /locus_tag="b1887" /gene_synonym="ECK1888; JW1876" /function="regulator; Chemotaxis and mobility" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042330 - taxis" /note="positive regulator of CheA protein activity" /codon_start=1 /transl_table=11 /product="purine-binding chemotaxis protein" /protein_id="NP_416401.1" /db_xref="GI:16129839" /db_xref="ASAP:ABE-0006292" /db_xref="UniProtKB/Swiss-Prot:P0A964" /db_xref="EcoGene:EG10149" /db_xref="GeneID:946400" /translation="MTGMTNVTKLASEPSGQEFLVFTLGDEEYGIDILKVQEIRGYDQ VTRIANTPAFIKGVTNLRGVIVPIVDLRIKFSQVDVDYNDNTVVIVLNLGQRVVGIVV DGVSDVLSLTAEQIRPAPEFAVTLSTEYLTGLGALGDRMLILVNIEKLLNSEEMALLD SAASEVA" gene complement(1973360..1975324) /gene="cheA" /locus_tag="b1888" /gene_synonym="ECK1889; JW1877" /db_xref="EcoGene:EG10146" /db_xref="GeneID:946401" CDS complement(1973360..1975324) /gene="cheA" /locus_tag="b1888" /gene_synonym="ECK1889; JW1877" /function="enzyme; Chemotaxis and mobility" /GO_process="GO:0006464 - protein modification process; GO:0042330 - taxis" /note="sensory transducer kinase between chemo- signal receptors and CheB and CheY" /codon_start=1 /transl_table=11 /product="fused chemotactic sensory histidine kinase in two-component regulatory system with CheB and CheY: sensory histidine kinase/signal sensing protein" /protein_id="NP_416402.1" /db_xref="GI:16129840" /db_xref="ASAP:ABE-0006294" /db_xref="UniProtKB/Swiss-Prot:P07363" /db_xref="EcoGene:EG10146" /db_xref="GeneID:946401" /translation="MSMDISDFYQTFFDEADELLADMEQHLLVLQPEAPDAEQLNAIF RAAHSIKGGAGTFGFSVLQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQL DAYKQSQEPDAASFDYICQALRQLALEAKGETPSAVTRLSVVAKSEPQDEQSRSQSPR RIILSRLKAGEVDLLEEELGHLTTLTDVVKGADSLSAILPGDIAEDDITAVLCFVIEA DQITFETVEVSPKISTPPVLKLAAEQAPTGRVEREKTTRSNESTSIRVAVEKVDQLIN LVGELVITQSMLAQRSSELDPVNHGDLITSMGQLQRNARDLQESVMSIRMMPMEYVFS RYPRLVRDLAGKLGKQVELTLVGSSTELDKSLIERIIDPLTHLVRNSLDHGIELPEKR LAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLTVSENMSDDEV AMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQKMGGHVEIQSKQGTGTTIRILLPLT LAILDGMSVRVADEVFILPLNAVMESLQPREADLHPLAGGERVLEVRGEYLPIVELWK VFNVAGAKTEATQGIVVILQSGGRRYALLVDQLIGQHQVVVKNLESNYRKVPGISAAT ILGDGSVALIVDVSALQAINREQRMANTAA" gene complement(1975329..1976255) /gene="motB" /locus_tag="b1889" /gene_synonym="ECK1890; flaJ; JW1878" /db_xref="EcoGene:EG10602" /db_xref="GeneID:946402" CDS complement(1975329..1976255) /gene="motB" /locus_tag="b1889" /gene_synonym="ECK1890; flaJ; JW1878" /function="structural component; Chemotaxis and mobility" /GO_component="GO:0019861 - flagellum; GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042330 - taxis" /note="enables flagellar motor rotation, linking torque machinery to cell wall" /codon_start=1 /transl_table=11 /product="protein that enables flagellar motor rotation" /protein_id="NP_416403.1" /db_xref="GI:16129841" /db_xref="ASAP:ABE-0006297" /db_xref="UniProtKB/Swiss-Prot:P0AF06" /db_xref="EcoGene:EG10602" /db_xref="GeneID:946402" /translation="MKNQAHPIIVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVM WLISISSPKELIQIAEYFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPN IEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRPM FRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRA NASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHE NAESQNEPVSALEKPEVAPQVSVPTMPSAEPR" gene complement(1976252..1977139) /gene="motA" /locus_tag="b1890" /gene_synonym="ECK1891; flaJ; JW1879" /db_xref="EcoGene:EG10601" /db_xref="GeneID:947564" CDS complement(1976252..1977139) /gene="motA" /locus_tag="b1890" /gene_synonym="ECK1891; flaJ; JW1879" /function="phenotype; Chemotaxis and mobility" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042330 - taxis" /note="proton conductor component of motor; no effect on switching" /codon_start=1 /transl_table=11 /product="proton conductor component of flagella motor" /protein_id="NP_416404.1" /db_xref="GI:16129842" /db_xref="ASAP:ABE-0006299" /db_xref="UniProtKB/Swiss-Prot:P09348" /db_xref="EcoGene:EG10601" /db_xref="GeneID:947564" /translation="MLILLGYLVVLGTVFGGYLMTGGSLGALYQPAELVIIAGAGIGS FIVGNNGKAIKGTLKALPLLFRRSKYTKAMYMDLLALLYRLMAKSRQMGMFSLERDIE NPRESEIFASYPRILADSVMLDFIVDYLRLIISGHMNTFEIEALMDEEIETHESEAEV PANSLALVGDSLPAFGIVAAVMGVVHALGSADRPAAELGALIAHAMVGTFLGILLAYG FISPLATVLRQKSAETSKMMQCVKVTLLSNLNGYAPPIAVEFGRKTLYSSERPSFIEL EEHVRAVKNPQQQTTTEEA" gene complement(1977266..1977844) /gene="flhC" /locus_tag="b1891" /gene_synonym="ECK1892; flaI; JW1880" /db_xref="EcoGene:EG10319" /db_xref="GeneID:947280" CDS complement(1977266..1977844) /gene="flhC" /locus_tag="b1891" /gene_synonym="ECK1892; flaI; JW1880" /function="regulator; Surface structures" /GO_component="GO:0005737 - cytoplasm; GO:0019861 - flagellum" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis; GO:0006350 - transcription" /note="regulator of flagellar biosynthesis acting on class 2 operons; transcription initiation factor?" /codon_start=1 /transl_table=11 /product="flagellar class II regulon transcriptional activator, with FlhD" /protein_id="NP_416405.1" /db_xref="GI:16129843" /db_xref="ASAP:ABE-0006301" /db_xref="UniProtKB/Swiss-Prot:P0ABY7" /db_xref="EcoGene:EG10319" /db_xref="GeneID:947280" /translation="MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLY KELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLY LEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLC QPPSRAVKRRKLSQNPADIIPQLLDEQRVQAV" gene complement(1977847..1978197) /gene="flhD" /locus_tag="b1892" /gene_synonym="ECK1893; flbB; JW1881" /db_xref="EcoGene:EG10320" /db_xref="GeneID:945442" CDS complement(1977847..1978197) /gene="flhD" /locus_tag="b1892" /gene_synonym="ECK1893; flbB; JW1881" /function="regulator; Surface structures" /GO_component="GO:0005737 - cytoplasm; GO:0019861 - flagellum" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis; GO:0006350 - transcription" /note="regulator of flagellar biosynthesis, acting on class 2 operons; transcriptional initiation factor?" /codon_start=1 /transl_table=11 /product="flagellar class II regulon transcriptional activator, with FlhC" /protein_id="NP_416406.4" /db_xref="GI:145698279" /db_xref="ASAP:ABE-0006303" /db_xref="UniProtKB/Swiss-Prot:P0A8S9" /db_xref="EcoGene:EG10320" /db_xref="GeneID:945442" /translation="MHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEEMAT TLAALTLPQMVKLAETNQLVCHFRFDSHQTITQLTQDSRVDDLQQIHTGIMLSTRLLN DVNQPEEALRKKRA" mobile_element complement(1978503..1979270) /mobile_element_type="insertion sequence:IS1H" gene complement(1978518..1979021) /gene="insB1" /locus_tag="b1893" /gene_synonym="ECK0022" /db_xref="EcoGene:EG40002" /db_xref="GeneID:945867" CDS complement(1978518..1979021) /gene="insB1" /locus_tag="b1893" /gene_synonym="ECK0022" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS1 transposase B" /protein_id="NP_416407.1" /db_xref="GI:16129845" /db_xref="ASAP:ABE-0006308" /db_xref="UniProtKB/Swiss-Prot:P0CF30" /db_xref="EcoGene:EG40002" /db_xref="GeneID:945867" /translation="MPGNSPHYGRWPQHDFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EQWGYVGAKSRQRWLFYAYDSLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY LNIKHYQ" gene complement(1978940..1979215) /gene="insA" /locus_tag="b1894" /gene_synonym="ECK4541" /note="insA8" /db_xref="EcoGene:EG40001" /db_xref="GeneID:945800" CDS complement(1978940..1979215) /gene="insA" /locus_tag="b1894" /gene_synonym="ECK4541" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS1 repressor TnpA" /protein_id="NP_416408.1" /db_xref="GI:16129846" /db_xref="ASAP:ABE-0006311" /db_xref="UniProtKB/Swiss-Prot:P0CF13" /db_xref="EcoGene:EG40001" /db_xref="GeneID:945800" /translation="MASVSISCPSCSATDGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRATARIMGVGLNTILRHLKNSGRSR" gene 1979753..1980181 /gene="uspC" /locus_tag="b1895" /gene_synonym="ECK1894; JW1884; yecG" /db_xref="EcoGene:EG12862" /db_xref="GeneID:946404" CDS 1979753..1980181 /gene="uspC" /locus_tag="b1895" /gene_synonym="ECK1894; JW1884; yecG" /function="putative regulator; Not classified" /note="putative regulator" /codon_start=1 /transl_table=11 /product="universal stress protein" /protein_id="NP_416409.1" /db_xref="GI:16129847" /db_xref="ASAP:ABE-0006316" /db_xref="UniProtKB/Swiss-Prot:P46888" /db_xref="EcoGene:EG12862" /db_xref="GeneID:946404" /translation="MSYSNILVAVAVTPESQQLLAKAVSIARPVKGHISLITLASDPE MYNQLAAPMLEDLRSVMHEETQSFLDKLIQDAGYPVDKTFIAYGELSEHILEVCHKHH FDLVICGNHNHSFFSRASCSAKRVIASSEVDVLLVPLTGD" gene complement(1980188..1981612) /gene="otsA" /locus_tag="b1896" /gene_synonym="ECK1895; JW5312; pexA" /db_xref="EcoGene:EG11751" /db_xref="GeneID:946405" CDS complement(1980188..1981612) /gene="otsA" /locus_tag="b1896" /gene_synonym="ECK1895; JW5312; pexA" /EC_number="2.4.1.15" /function="enzyme; Osmotic adaptation" /GO_process="GO:0006006 - glucose metabolic process; GO:0006970 - response to osmotic stress" /codon_start=1 /transl_table=11 /product="trehalose-6-phosphate synthase" /protein_id="NP_416410.1" /db_xref="GI:16129848" /db_xref="ASAP:ABE-0006318" /db_xref="UniProtKB/Swiss-Prot:P31677" /db_xref="EcoGene:EG11751" /db_xref="GeneID:946405" /translation="MSRLVVVSNRIAPPDEHAASAGGLAVGILGALKAAGGLWFGWSG ETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFSNAVLWPAFHYRLDLVQFQRPA WDGYLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPT PEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKA FRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLA YEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLY YLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAA NELTSALIVNPYDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISD LKQIVPRSAESQQRDKVATFPKLA" gene complement(1981587..1982387) /gene="otsB" /locus_tag="b1897" /gene_synonym="ECK1896; JW1886; otsP" /db_xref="EcoGene:EG11752" /db_xref="GeneID:946406" CDS complement(1981587..1982387) /gene="otsB" /locus_tag="b1897" /gene_synonym="ECK1896; JW1886; otsP" /EC_number="3.1.3.12" /function="enzyme; Osmotic adaptation" /experiment="N-terminus verified by Edman degradation: PMID 8045430" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006006 - glucose metabolic process; GO:0006970 - response to osmotic stress" /note="trehalose-6-phosphate phophatase, biosynthetic" /codon_start=1 /transl_table=11 /product="trehalose-6-phosphate phosphatase, biosynthetic" /protein_id="NP_416411.1" /db_xref="GI:16129849" /db_xref="ASAP:ABE-0006320" /db_xref="UniProtKB/Swiss-Prot:P31678" /db_xref="EcoGene:EG11752" /db_xref="GeneID:946406" /translation="MTEPLTETPELSAKYAWFFDLDGTLAEIKPHPDQVVVPDNILQG LQLLATASDGALALISGRSMVELDALAKPYRFPLAGVHGAERRDINGKTHIVHLPDAI ARDISVQLHTVIAQYPGAELEAKGMAFALHYRQAPQHEDALMTLAQRITQIWPQMALQ QGKCVVEIKPRGTSKGEAIAAFMQEAPFIGRTPVFLGDDLTDESGFAVVNRLGGMSVK IGTGATQASWRLAGVPDVWSWLEMITTALQQKRENNRSDDYESFSRSI" gene complement(1982554..1983540) /gene="araH" /locus_tag="b4460" /gene_synonym="ECK1897; JW1887" /db_xref="EcoGene:EG10059" /db_xref="GeneID:948923" CDS complement(1982554..1983540) /gene="araH" /locus_tag="b4460" /gene_synonym="ECK1897; JW1887" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="high-affinity L-arabinose transport protein (ABC superfamily, membrane)" /codon_start=1 /transl_table=11 /product="L-arabinose ABC transporter permease" /protein_id="YP_026162.2" /db_xref="GI:145698280" /db_xref="ASAP:ABE-0174093" /db_xref="UniProtKB/Swiss-Prot:P0AE26" /db_xref="EcoGene:EG10059" /db_xref="GeneID:948923" /translation="MSSVSTSGSGAPKSSFSFGRIWDQYGMLVVFAVLFIACAIFVPN FATFINMKGLGLAISMSGMVACGMLFCLASGDFDLSVASVIACAGVTTAVVINLTESL WIGVAAGLLLGVLCGLVNGFVIAKLKINALITTLATMQIVRGLAYIISDGKAVGIEDE SFFALGYANWFGLPAPIWLTVACLIIFGLLLNKTTFGRNTLAIGGNEEAARLAGVPVV RTKIIIFVLSGLVSAIAGIILASRMTSGQPMTSIGYELIVISACVLGGVSLKGGIGKI SYVVAGILILGTVENAMNLLNISPFAQYVVRGLILLAAVIFDRYKQKAKRTV" gene complement(1983555..1985069) /gene="araG" /locus_tag="b1900" /gene_synonym="ECK1898; JW1888" /db_xref="EcoGene:EG10058" /db_xref="GeneID:946408" CDS complement(1983555..1985069) /gene="araG" /locus_tag="b1900" /gene_synonym="ECK1898; JW1888" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="ATP-binding component of high-affinity L-arabinose transport system" /codon_start=1 /transl_table=11 /product="L-arabinose ABC transporter ATPase" /protein_id="NP_416413.1" /db_xref="GI:16129850" /db_xref="ASAP:ABE-0006328" /db_xref="UniProtKB/Swiss-Prot:P0AAF3" /db_xref="EcoGene:EG10058" /db_xref="GeneID:946408" /translation="MQQSTPYLSFRGIGKTFPGVKALTDISFDCYAGQVHALMGENGA GKSTLLKILSGNYAPTTGSVVINGQEMSFSDTTAALNAGVAIIYQELHLVPEMTVAEN IYLGQLPHKGGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVEIAKALAR NAKIIAFDEPTSSLSAREIDNLFRVIRELRKEGRVILYVSHRMEEIFALSDAITVFKD GRYVKTFTDMQQVDHDALVQAMVGRDIGDIYGWQPRSYGEERLRLDAVKAPGVRTPIS LAVRSGEIVGLFGLVGAGRSELMKGMFGGTQITAGQVYIDQQPIDIRKPSHAIAAGMM LCPEDRKAEGIIPVHSVRDNINISARRKHVLGGCVINNGWEENNADHHIRSLNIKTPG AEQLIMNLSGGNQQKAILGRWLSEEMKVILLDEPTRGIDVGAKHEIYNVIYALAAQGV AVLFASSDLPEVLGVADRIVVMREGEIAGELLHEQADERQALSLAMPKVSQAVA" gene complement(1985139..1986128) /gene="araF" /locus_tag="b1901" /gene_synonym="ECK1899; JW1889" /db_xref="EcoGene:EG10057" /db_xref="GeneID:946409" CDS complement(1985139..1986128) /gene="araF" /locus_tag="b1901" /gene_synonym="ECK1899; JW1889" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="L-arabinose-binding periplasmic protein; periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="L-arabinose ABC transporter periplasmic binding protein" /protein_id="NP_416414.1" /db_xref="GI:16129851" /db_xref="ASAP:ABE-0006330" /db_xref="UniProtKB/Swiss-Prot:P02924" /db_xref="EcoGene:EG10057" /db_xref="GeneID:946409" /translation="MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEW KFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKAR GYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAV MAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPE VKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLL PSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKGLGGK" gene 1986925..1987428 /gene="ftnB" /locus_tag="b1902" /gene_synonym="ECK1900; JW1890; yecI" /db_xref="EcoGene:EG13175" /db_xref="GeneID:946407" CDS 1986925..1987428 /gene="ftnB" /locus_tag="b1902" /gene_synonym="ECK1900; JW1890; yecI" /function="putative carrier; Transport of small molecules: Cations" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006826 - iron ion transport" /note="ferritin-like protein" /codon_start=1 /transl_table=11 /product="ferritin B, putative ferrous iron reservoir" /protein_id="NP_416415.1" /db_xref="GI:16129852" /db_xref="ASAP:ABE-0006333" /db_xref="UniProtKB/Swiss-Prot:P0A9A2" /db_xref="EcoGene:EG13175" /db_xref="GeneID:946407" /translation="MATAGMLLKLNSQMNREFYASNLYLHLSNWCSEQSLNGTATFLR AQAQSNVTQMMRMFNFMKSVGATPIVKAIDVPGEKLNSLEELFQKTMEEYEQRSSTLA QLADEAKELNDDSTVNFLRDLEKEQQHDGLLLQTILDEVRSAKLAGMCPVQTDQHVLN VVSHQLH" gene complement(1987507..1987758) /gene="yecJ" /locus_tag="b4537" /gene_synonym="ECK1901; JW1891" /db_xref="EcoGene:EG13242" /db_xref="GeneID:946388" CDS complement(1987507..1987758) /gene="yecJ" /locus_tag="b4537" /gene_synonym="ECK1901; JW1891" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="DUF2766 family protein" /protein_id="NP_416416.2" /db_xref="GI:94541093" /db_xref="ASAP:ABE-0285058" /db_xref="UniProtKB/Swiss-Prot:P0AD10" /db_xref="EcoGene:EG13242" /db_xref="GeneID:946388" /translation="MSQPLNADQELVSDVVACQLVIKQILDVLDVIAPVEVREKMSSQ LKNIDFTNHPAAADPVTMRAIQKAIALIELKFTPQGESH" gene complement(1987873..1987959) /gene="azuC" /locus_tag="b4663" /gene_synonym="ECK4478; IS092; isrB" /db_xref="EcoGene:EG14468" /db_xref="GeneID:7751642" CDS complement(1987873..1987959) /gene="azuC" /locus_tag="b4663" /gene_synonym="ECK4478; IS092; isrB" /codon_start=1 /transl_table=11 /product="acid-inducible small membrane-associated protein" /protein_id="YP_002791245.1" /db_xref="GI:226524726" /db_xref="UniProtKB/Swiss-Prot:C1P605" /db_xref="EcoGene:EG14468" /db_xref="GeneID:7751642" /translation="MKLRKILKSMFNNYCKTFKDVPPGNMFR" gene 1988222..1988545 /gene="yecR" /locus_tag="b1904" /gene_synonym="ECK1903; JW1892" /db_xref="EcoGene:EG14036" /db_xref="GeneID:946386" CDS 1988222..1988545 /gene="yecR" /locus_tag="b1904" /gene_synonym="ECK1903; JW1892" /codon_start=1 /transl_table=11 /product="lipoprotein, function unknown" /protein_id="NP_416417.1" /db_xref="GI:16129854" /db_xref="ASAP:ABE-0006338" /db_xref="UniProtKB/Swiss-Prot:P76308" /db_xref="EcoGene:EG14036" /db_xref="GeneID:946386" /translation="MRLLILTLSLITLAGCTVTRQAHVSEVDAATGIVRLVYDQAFLQ HAHTDRYVSRGIADRACQQEGYTHAVPFGQPVGNCSLFAGSLCLNTEFTLSYQCHHSA FPVFL" gene 1988716..1989213 /gene="ftnA" /locus_tag="b1905" /gene_synonym="ECK1904; ftn; gen-165; JW1893; rsgA" /db_xref="EcoGene:EG10921" /db_xref="GeneID:946410" CDS 1988716..1989213 /gene="ftnA" /locus_tag="b1905" /gene_synonym="ECK1904; ftn; gen-165; JW1893; rsgA" /function="carrier; Transport of small molecules: Cations" /experiment="N-terminus verified by Edman degradation: PMID 8281950" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006826 - iron ion transport" /note="cytoplasmic ferritin (an iron storage protein)" /codon_start=1 /transl_table=11 /product="ferritin iron storage protein (cytoplasmic)" /protein_id="NP_416418.1" /db_xref="GI:16129855" /db_xref="ASAP:ABE-0006342" /db_xref="UniProtKB/Swiss-Prot:P0A998" /db_xref="EcoGene:EG10921" /db_xref="GeneID:946410" /translation="MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLR RHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQKIN ELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKELST LDTQN" gene complement(1989251..1989490) /gene="yecH" /locus_tag="b1906" /gene_synonym="ECK1905; JW1894" /db_xref="EcoGene:EG12863" /db_xref="GeneID:946411" CDS complement(1989251..1989490) /gene="yecH" /locus_tag="b1906" /gene_synonym="ECK1905; JW1894" /codon_start=1 /transl_table=11 /product="DUF2492 family protein" /protein_id="NP_416419.1" /db_xref="GI:16129856" /db_xref="ASAP:ABE-0006344" /db_xref="UniProtKB/Swiss-Prot:P46887" /db_xref="EcoGene:EG12863" /db_xref="GeneID:946411" /translation="MDSIHGHEVLNMMIESGEQYTHASLEAAIKARFGEQARFHTCSA EGMTAGELVAFLAAKGKFIPSKDGFSTDQSKICRH" gene 1989681..1990892 /gene="tyrP" /locus_tag="b1907" /gene_synonym="ECK1906; JW1895" /db_xref="EcoGene:EG11041" /db_xref="GeneID:946412" CDS 1989681..1990892 /gene="tyrP" /locus_tag="b1907" /gene_synonym="ECK1906; JW1895" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006571 - tyrosine biosynthetic process" /note="tyrosine-specific transport system" /codon_start=1 /transl_table=11 /product="tyrosine transporter" /protein_id="NP_416420.1" /db_xref="GI:16129857" /db_xref="ASAP:ABE-0006355" /db_xref="UniProtKB/Swiss-Prot:P0AAD4" /db_xref="EcoGene:EG11041" /db_xref="GeneID:946412" /translation="MKNRTLGSVFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLW ALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGA GELLASSISDWTGISMSATAGVLLFTFVAGGVVCVGTSLVDLFNRFLFSAKIIFLVVM LVLLLPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMDGNIRKLRWVF IIGSAIPLVAYIFWQVATLGSIDSTTFMGLLANHAGLNGLLQALREMVASPHVELAVH LFADLALATSFLGVALGLFDYLADLFQRSNTVGGRLQTGAITFLPPLAFALFYPRGFV MALGYAGVALAVLALIIPSLLTWQSRKHNPQAGYRVKGGRPALVVVFLCGIAVIGVQF LIAAGLLPEVG" gene complement(1990954..1991619) /gene="yecA" /locus_tag="b1908" /gene_synonym="ECK1907; JW1896" /db_xref="EcoGene:EG11139" /db_xref="GeneID:945061" CDS complement(1990954..1991619) /gene="yecA" /locus_tag="b1908" /gene_synonym="ECK1907; JW1896" /codon_start=1 /transl_table=11 /product="UPF0149 family protein" /protein_id="NP_416421.1" /db_xref="GI:16129858" /db_xref="ASAP:ABE-0006357" /db_xref="UniProtKB/Swiss-Prot:P0AD05" /db_xref="EcoGene:EG11139" /db_xref="GeneID:945061" /translation="MKTGPLNESELEWLDDILTKYNTDHAILDVAELDGLLTAVLSSP QEIEPEQWLVAVWGGADYVPRWASEKEMTRFMNLAFQHMADTAERLNEFPEQFEPLFG LREVDGSELTIVEEWCFGYMRGVALSDWSTLPDSLKPALEAIALHGTEENFERVEKMS PEAFEESVDAIRLAALDLHAYWMAHPQEKAVQQPIKAEEKPGRNDPCPCGSGKKFKQC CLH" gene complement(1991815..1991901) /gene="leuZ" /locus_tag="b1909" /gene_synonym="ECK1908; JWR0033" /db_xref="EcoGene:EG30054" /db_xref="GeneID:945662" tRNA complement(1991815..1991901) /gene="leuZ" /locus_tag="b1909" /gene_synonym="ECK1908; JWR0033" /product="tRNA-Leu" /note="anticodon: GAG" /db_xref="ASAP:ABE-0006361" /db_xref="EcoGene:EG30054" /db_xref="GeneID:945662" gene complement(1991914..1991987) /gene="cysT" /locus_tag="b1910" /gene_synonym="ECK1909; JWR0034" /db_xref="EcoGene:EG30026" /db_xref="GeneID:946414" tRNA complement(1991914..1991987) /gene="cysT" /locus_tag="b1910" /gene_synonym="ECK1909; JWR0034" /product="tRNA-Cys" /note="anticodon: GCA" /db_xref="ASAP:ABE-0006363" /db_xref="EcoGene:EG30026" /db_xref="GeneID:946414" gene complement(1992042..1992117) /gene="glyW" /locus_tag="b1911" /gene_synonym="ECK1910; ins; JWR0035; mutC; suA58; suA78" /db_xref="EcoGene:EG30039" /db_xref="GeneID:946416" tRNA complement(1992042..1992117) /gene="glyW" /locus_tag="b1911" /gene_synonym="ECK1910; ins; JWR0035; mutC; suA58; suA78" /product="tRNA-Gly" /note="anticodon: GCC" /db_xref="ASAP:ABE-0006365" /db_xref="EcoGene:EG30039" /db_xref="GeneID:946416" gene complement(1992269..1992817) /gene="pgsA" /locus_tag="b1912" /gene_synonym="ECK1911; JW1897" /db_xref="EcoGene:EG10706" /db_xref="GeneID:945791" CDS complement(1992269..1992817) /gene="pgsA" /locus_tag="b1912" /gene_synonym="ECK1911; JW1897" /EC_number="2.7.8.5" /function="enzyme; Macromolecule synthesis, modification: Phospholipids" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0008654 - phospholipid biosynthetic process" /note="phosphatidylglycerophosphate synthetase = CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase" /codon_start=1 /transl_table=11 /product="phosphatidylglycerophosphate synthetase" /protein_id="NP_416422.1" /db_xref="GI:16129859" /db_xref="ASAP:ABE-0006367" /db_xref="UniProtKB/Swiss-Prot:P0ABF8" /db_xref="EcoGene:EG10706" /db_xref="GeneID:945791" /translation="MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAV TDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIARE IIISALREWMAELGKRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVA AVLTLWSMLQYLSAARADLLDQ" gene complement(1992874..1994706) /gene="uvrC" /locus_tag="b1913" /gene_synonym="ECK1912; JW1898" /db_xref="EcoGene:EG11063" /db_xref="GeneID:947203" CDS complement(1992874..1994706) /gene="uvrC" /locus_tag="b1913" /gene_synonym="ECK1912; JW1898" /function="enzyme; Degradation of DNA" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006308 - DNA catabolic process; GO:0006281 - DNA repair; GO:0009314 - response to radiation" /note="excinuclease ABC, subunit C; repair of UV damage to DNA" /codon_start=1 /transl_table=11 /product="excinuclease UvrABC, endonuclease subunit" /protein_id="NP_416423.4" /db_xref="GI:90111354" /db_xref="ASAP:ABE-0006370" /db_xref="UniProtKB/Swiss-Prot:P0A8G0" /db_xref="EcoGene:EG11063" /db_xref="GeneID:947203" /translation="MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLS SYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSY PFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR NRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETAS QNLEFEEAARIRDQIQAVRRVTEKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKV LGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLS ELAGRKINVQTKPRGDRARYLKLARTNAATALTSKLSQQSTVHQRLTALASVLKLPEV KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRY GKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLET LFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGP KRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH" gene complement(1994703..1995359) /gene="uvrY" /locus_tag="b1914" /gene_synonym="ECK1913; gacA; JW1899; sirA; yecB" /db_xref="EcoGene:EG11140" /db_xref="GeneID:946424" CDS complement(1994703..1995359) /gene="uvrY" /locus_tag="b1914" /gene_synonym="ECK1913; gacA; JW1899; sirA; yecB" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="putative 2-component transcriptional regulator" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with BarA" /protein_id="NP_416424.1" /db_xref="GI:16129861" /db_xref="ASAP:ABE-0006373" /db_xref="UniProtKB/Swiss-Prot:P0AED5" /db_xref="EcoGene:EG11140" /db_xref="GeneID:946424" /translation="MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCR TNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYL SKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ " gene 1995818..1996042 /gene="yecF" /locus_tag="b1915" /gene_synonym="ECK1914; JW1900" /db_xref="EcoGene:EG12861" /db_xref="GeneID:946420" CDS 1995818..1996042 /gene="yecF" /locus_tag="b1915" /gene_synonym="ECK1914; JW1900" /codon_start=1 /transl_table=11 /product="DUF2594 family protein" /protein_id="NP_416425.1" /db_xref="GI:16129862" /db_xref="ASAP:ABE-0006379" /db_xref="UniProtKB/Swiss-Prot:P0AD07" /db_xref="EcoGene:EG12861" /db_xref="GeneID:946420" /translation="MSTPDFSTAENNQELANEVSCLKAMLTLMLQAMGQADAGRVMLK MEKQLALIEDETQAAVFSKTVKQIKQAYRQ" gene complement(1996110..1996832) /gene="sdiA" /locus_tag="b1916" /gene_synonym="ECK1915; JW1901; uvrX" /db_xref="EcoGene:EG10935" /db_xref="GeneID:946421" CDS complement(1996110..1996832) /gene="sdiA" /locus_tag="b1916" /gene_synonym="ECK1915; JW1901; uvrX" /function="regulator; Cell division" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="transcriptional regulator of ftsQAZ gene cluster" /codon_start=1 /transl_table=11 /product="quorum-sensing transcriptional activator" /protein_id="NP_416426.1" /db_xref="GI:16129863" /db_xref="ASAP:ABE-0006381" /db_xref="UniProtKB/Swiss-Prot:P07026" /db_xref="EcoGene:EG10935" /db_xref="GeneID:946421" /translation="MQDKDFFSWRRTMLLRFQRMETAEEVYHEIELQAQQLEYDYYSL CVRHPVPFTRPKVAFYTNYPEAWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSE AQPLWEAARAHGLRRGVTQYLMLPNRALGFLSFSRCSAREIPILSDELQLKMQLLVRE SLMALMRLNDEIVMTPEMNFSKREKEILRWTAEGKTSAEIAMILSISENTVNFHQKNM QKKINAPNKTQVACYAAATGLI" gene complement(1997062..1997814) /gene="yecC" /locus_tag="b1917" /gene_synonym="ECK1916; JW1902" /db_xref="EcoGene:EG12347" /db_xref="GeneID:946422" CDS complement(1997062..1997814) /gene="yecC" /locus_tag="b1917" /gene_synonym="ECK1916; JW1902" /function="putative transport; Not classified" /GO_component="GO:0005737 - cytoplasm" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="putative ABC transporter ATPase" /protein_id="NP_416427.1" /db_xref="GI:16129864" /db_xref="ASAP:ABE-0006384" /db_xref="UniProtKB/Swiss-Prot:P37774" /db_xref="EcoGene:EG12347" /db_xref="GeneID:946422" /translation="MSAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTT LLRSINLLEQPEAGTITVGDITIDTARSLSQQKSLIRQLRQHVGFVFQNFNLFPHRTV LENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD QGRIVEQGAAKALFADPEQPRTRQFLEKFLLQ" gene complement(1997811..1998479) /gene="yecS" /locus_tag="b1918" /gene_synonym="ECK1917; JW1903" /db_xref="EcoGene:EG14037" /db_xref="GeneID:949105" CDS complement(1997811..1998479) /gene="yecS" /locus_tag="b1918" /gene_synonym="ECK1917; JW1903" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport system permease protein (former yecC)" /codon_start=1 /transl_table=11 /product="ABC family putative inner membrane permease" /protein_id="NP_416428.1" /db_xref="GI:16129865" /db_xref="ASAP:ABE-0006386" /db_xref="UniProtKB/Swiss-Prot:P0AFT2" /db_xref="EcoGene:EG14037" /db_xref="GeneID:949105" /translation="MQESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMR LSPIWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQFGIELDPIPSAMIGLSLNTAAY AAETLRAAISSIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDT SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQE REPK" gene complement(1998494..1999480) /gene="dcyD" /locus_tag="b1919" /gene_synonym="ECK1918; JW5313; yedO" /db_xref="EcoGene:EG14038" /db_xref="GeneID:946831" CDS complement(1998494..1999480) /gene="dcyD" /locus_tag="b1919" /gene_synonym="ECK1918; JW5313; yedO" /EC_number="4.4.1.15" /function="putative enzyme; Not classified" /note="putative 1-aminocyclopropane-1-carboxylate deaminase" /codon_start=1 /transl_table=11 /product="D-cysteine desulfhydrase, PLP-dependent" /protein_id="NP_416429.4" /db_xref="GI:90111355" /db_xref="ASAP:ABE-0006389" /db_xref="UniProtKB/Swiss-Prot:P76316" /db_xref="EcoGene:EG14038" /db_xref="GeneID:946831" /translation="MPLHNLTRFPRLEFIGAPTPLEYLPRFSDYLGREIFIKRDDVTP MAMGGNKLRKLEFLAADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENP IGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPNAQLEELATRVEAQGFRPYVIPVGG SNALGALGYVESALEIAQQCEGAVNISSVVVASGSAGTHAGLAVGLEHLMPESELIGV TVSRSVADQLPKVVNLQQAIAKELELTASAEILLWDDYFAPGYGVPNDEGMEAVKLLA RLEGILLDPVYTGKAMAGLIDGISQKRFKDEGPILFIHTGGAPALFAYHPHV" gene complement(1999585..2000385) /gene="fliY" /locus_tag="b1920" /gene_synonym="ECK1919; JW1905; yzzR" /db_xref="EcoGene:EG12680" /db_xref="GeneID:948833" CDS complement(1999585..2000385) /gene="fliY" /locus_tag="b1920" /gene_synonym="ECK1919; JW1905; yzzR" /function="putative transport; Not classified" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0019344 - cysteine biosynthetic process; GO:0042883 - cysteine transport" /note="putative periplasmic binding transport protein; periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="cystine transporter subunit" /protein_id="NP_416430.1" /db_xref="GI:16129867" /db_xref="ASAP:ABE-0006392" /db_xref="UniProtKB/Swiss-Prot:P0AEM9" /db_xref="EcoGene:EG12680" /db_xref="GeneID:948833" /translation="MKLAHLGRQALMGVMAVALVAGMSVKSFADEGLLNKVKERGTLL VGLEGTYPPFSFQGDDGKLTGFEVEFAQQLAKHLGVEASLKPTKWDGMLASLDSKRID VVINQVTISDERKKKYDFSTPYTISGIQALVKKGNEGTIKTADDLKGKKVGVGLGTNY EEWLRQNVQGVDVRTYDDDPTKYQDLRVGRIDAILVDRLAALDLVKKTNDTLAVTGEA FSRQESGVALRKGNEDLLKAVNDAIAEMQKDGTLQALSEKWFGADVTK" gene complement(2000473..2001024) /gene="fliZ" /locus_tag="b1921" /gene_synonym="ECK1920; JW1906; yedH" /db_xref="EcoGene:EG11356" /db_xref="GeneID:946833" CDS complement(2000473..2001024) /gene="fliZ" /locus_tag="b1921" /gene_synonym="ECK1920; JW1906; yedH" /function="structural component; Unknown" /codon_start=1 /transl_table=11 /product="RpoS antagonist; putative regulator of FliA activity" /protein_id="NP_416431.2" /db_xref="GI:90111356" /db_xref="ASAP:ABE-0006394" /db_xref="UniProtKB/Swiss-Prot:P52627" /db_xref="EcoGene:EG11356" /db_xref="GeneID:946833" /translation="MMVQHLKRRPLSRYLKDFKHSQTHCAHCRKLLDRITLVRDGKIV NKIEISRLDTLLDENGWQTEQKSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEM SPGTVREYVVRLRRLGNHLHEQNISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQ HYQRQTCTRLVQKSSSLPSSDIY" gene complement(2001070..2001789) /gene="fliA" /locus_tag="b1922" /gene_synonym="ECK1921; flaD; JW1907; rpoF" /db_xref="EcoGene:EG11355" /db_xref="GeneID:948824" CDS complement(2001070..2001789) /gene="fliA" /locus_tag="b1922" /gene_synonym="ECK1921; flaD; JW1907; rpoF" /function="factor; Surface structures" /GO_component="GO:0005737 - cytoplasm; GO:0019861 - flagellum" /GO_process="GO:0042330 - taxis; GO:0006350 - transcription" /note="flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma 28 (sigma F) factor" /protein_id="NP_416432.3" /db_xref="GI:49176170" /db_xref="ASAP:ABE-0006396" /db_xref="UniProtKB/Swiss-Prot:P0AEM6" /db_xref="EcoGene:EG11355" /db_xref="GeneID:948824" /translation="MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDL LQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQ AIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELV TDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGE SRVSQLHSQAIKRLRTKLGKL" repeat_region 2001968..2002066 /note="RIP141 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(2002110..2003606) /gene="fliC" /locus_tag="b1923" /gene_synonym="ECK1922; flaF; H; hag; JW1908" /db_xref="EcoGene:EG10321" /db_xref="GeneID:949101" CDS complement(2002110..2003606) /gene="fliC" /locus_tag="b1923" /gene_synonym="ECK1922; flaF; H; hag; JW1908" /function="structural component; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis; flagellin, filament structural protein" /codon_start=1 /transl_table=11 /product="flagellar filament structural protein (flagellin)" /protein_id="NP_416433.1" /db_xref="GI:16129870" /db_xref="ASAP:ABE-0006402" /db_xref="UniProtKB/Swiss-Prot:P04949" /db_xref="EcoGene:EG10321" /db_xref="GeneID:949101" /translation="MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDD AAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSEINNNLQRVRELTVQATTG TNSESDLSSIQDEIKSRLDEIDRVSGQTQFNGVNVLAKNGSMKIQVGANDNQTITIDL KQIDAKTLGLDGFSVKNNDTVTTSAPVTAFGATTTNNIKLTGITLSTEAATDTGGTNP ASIEGVYTDNGNDYYAKITGGDNDGKYYAVTVANDGTVTMATGATANATVTDANTTKA TTITSGGTPVQIDNTAGSATANLGAVSLVKLQDSKGNDTDTYALKDTNGNLYAADVNE TTGAVSVKTITYTDSSGAASSPTAVKLGGDDGKTEVVDIDGKTYDSADLNGGNLQTGL TAGGEALTAVANGKTTDPLKALDDAIASVDKFRSSLGAVQNRLDSAVTNLNNTTTNLS EAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLLQG" gene 2003872..2005278 /gene="fliD" /locus_tag="b1924" /gene_synonym="ECK1923; flbC; JW1909; rfs" /db_xref="EcoGene:EG10841" /db_xref="GeneID:946428" CDS 2003872..2005278 /gene="fliD" /locus_tag="b1924" /gene_synonym="ECK1923; flbC; JW1909; rfs" /function="putative structure; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis; filament capping protein; enables filament assembly" /codon_start=1 /transl_table=11 /product="flagellar filament capping protein" /protein_id="NP_416434.1" /db_xref="GI:16129871" /db_xref="ASAP:ABE-0006407" /db_xref="UniProtKB/Swiss-Prot:P24216" /db_xref="EcoGene:EG10841" /db_xref="GeneID:946428" /translation="MASISSLGVGSGLDLSSILDSLTAAQKATLTPISNQQSSFTAKL SAYGTLKSALTTFQTANTALSKADLFSATSTTSSTTAFSATTAGNAIAGKYTISVTHL AQAQTLTTRTTRDDTKTAIATSDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNA KAGVSASIINVGNGEYRLSVTSNDTGLDNAMTLSVSGDDALQSFMGYDASASSNGMEV SVAAQNAQLTVNNVAIENSSNTISDALENITLNLNDVTTGNQTLTITQDTSKAQTAIK DWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGDSTLRTIQTQLKSMLSNTVS SSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGDGKKTGITTTIGS NLTSWLSTTGIIKAATDGVSKTLNKLTKDYNAASDRIDAQVARYKEQFTQLDVLMTSL NSTSSYLTQQFENNSNSK" gene 2005303..2005713 /gene="fliS" /locus_tag="b1925" /gene_synonym="ECK1924; JW1910" /db_xref="EcoGene:EG11388" /db_xref="GeneID:946429" CDS 2005303..2005713 /gene="fliS" /locus_tag="b1925" /gene_synonym="ECK1924; JW1910" /function="regulator; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis; repressor of class 3a and 3b operons (RflA activity)" /codon_start=1 /transl_table=11 /product="flagellar protein potentiates polymerization" /protein_id="NP_416435.1" /db_xref="GI:16129872" /db_xref="ASAP:ABE-0006409" /db_xref="UniProtKB/Swiss-Prot:P26608" /db_xref="EcoGene:EG11388" /db_xref="GeneID:946429" /translation="MYAAKGTQAYAQIGVESAVMSASQQQLVTMLFDGVLSALVRASL FMQDNNQQGKGVSLSKAINIIENGLRVSLDEESKDELTQNLIALYSYMVRRLLQANLR NDVSAVEEVEALMRNIADAWKESLLSPSLIQDPV" gene 2005713..2006078 /gene="fliT" /locus_tag="b1926" /gene_synonym="ECK1925; JW1911" /db_xref="EcoGene:EG11389" /db_xref="GeneID:946433" CDS 2005713..2006078 /gene="fliT" /locus_tag="b1926" /gene_synonym="ECK1925; JW1911" /function="regulator; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0006457 - protein folding; GO:0042330 - taxis" /note="flagellar biosynthesis; repressor of class 3a and 3b operons (RflA activity)" /codon_start=1 /transl_table=11 /product="putative flagellar synthesis and assembly chaperone" /protein_id="NP_416436.1" /db_xref="GI:16129873" /db_xref="ASAP:ABE-0006411" /db_xref="UniProtKB/Swiss-Prot:P0ABY2" /db_xref="EcoGene:EG11389" /db_xref="GeneID:946433" /translation="MNHAPHLYFAWQQLVEKSQLMLRLATEEQWDELIASEMAYVNAV QEIAHLTEEVDPSTTMQEQLRPMLRLILDNESKVKQLLQIRMDELAKLVGQSSVQKSV LSAYGDQGGFVLAPQDNLF" gene 2006156..2007643 /gene="amyA" /locus_tag="b1927" /gene_synonym="ECK1926; JW1912; yedC" /db_xref="EcoGene:EG11387" /db_xref="GeneID:946434" CDS 2006156..2007643 /gene="amyA" /locus_tag="b1927" /gene_synonym="ECK1926; JW1912; yedC" /EC_number="3.2.1.1" /function="enzyme; Degradation of polysaccharides" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0000272 - polysaccharide catabolic process" /codon_start=1 /transl_table=11 /product="cytoplasmic alpha-amylase" /protein_id="NP_416437.1" /db_xref="GI:16129874" /db_xref="ASAP:ABE-0006414" /db_xref="UniProtKB/Swiss-Prot:P26612" /db_xref="EcoGene:EG11387" /db_xref="GeneID:946434" /translation="MRNPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPA YKGASGGYSVGYDSYDLFDLGEFDQKGSIPTKYGDKAQLLAAIDALKRNDIAVLLDVV VNHKMGADEKEAIRVQRVNADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCF SGIDHIENPDEDGIFKIVNDYTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKY WARWVMEQTQCDGFRLDAVKHIPAWFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQT YIDQVEGKTMLFDAPLQMKFHEASRMGRDYDMTQIFTGTLVEADPFHAVTLVANHDTQ PLQALEAPVEPWFKPLAYALILLRENGVPSVFYPDLYGAHYEDVGGDGQTYPIDMPII EQLDELILARQRFAHGVQTLFFDHPNCIAFSRSGTDEFPGCVVVMSNGDDGEKTIHLG ENYGNKTWRDFLGNRQERVVTDENGEATFFCNGGSVSVWVIEEVI" gene complement(2007677..2008090) /gene="yedD" /locus_tag="b1928" /gene_synonym="ECK1927; JW1913" /db_xref="EcoGene:EG11659" /db_xref="GeneID:949082" CDS complement(2007677..2008090) /gene="yedD" /locus_tag="b1928" /gene_synonym="ECK1927; JW1913" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_416438.1" /db_xref="GI:16129875" /db_xref="ASAP:ABE-0006416" /db_xref="UniProtKB/Swiss-Prot:P31063" /db_xref="EcoGene:EG11659" /db_xref="GeneID:949082" /translation="MKKLAIAGALLLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQ RALVSPEAIGSLIVTKEGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERD GNTIEYDGMTMERVDRPTAECAAALDKAPLPTPLP" gene 2008277..2009482 /gene="yedE" /locus_tag="b1929" /gene_synonym="ECK1928; JW1914" /db_xref="EcoGene:EG11660" /db_xref="GeneID:945192" CDS 2008277..2009482 /gene="yedE" /locus_tag="b1929" /gene_synonym="ECK1928; JW1914" /function="putative transport; Not classified" /note="putative transport system permease protein" /codon_start=1 /transl_table=11 /product="UPF0394 family sulphur transport domain-containing inner membrane protein" /protein_id="NP_416439.1" /db_xref="GI:16129876" /db_xref="ASAP:ABE-0006422" /db_xref="UniProtKB/Swiss-Prot:P31064" /db_xref="EcoGene:EG11660" /db_xref="GeneID:945192" /translation="MSWQQFKHAWLIKFWAPIPAVIAAGILSTYYFGITGTFWAVTGE FTRWGGQLLQLFGVHAEEWGYFKIIHLEGSPLTRIDGMMILGMFGGCFAAALWANNVK LRMPRSRIRIMQAIIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFAIATAIGSW FGARFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRFRLGMLVFFGMLGWALLTAMNQ PKLGLAMLFGVGFGLLIERAQICFTSAFRDMWITGRTHMAKAIIIGMAVSAIGIFSYV QLGVEPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGS TILAYYWDDFAPALATDWDKINLLKTFGPMGGLLVTYLLLFAALMLIIGWEKRFFRRA APQTAKEIA" gene 2009479..2009712 /gene="yedF" /locus_tag="b1930" /gene_synonym="ECK1929; JW1915" /db_xref="EcoGene:EG11661" /db_xref="GeneID:946909" CDS 2009479..2009712 /gene="yedF" /locus_tag="b1930" /gene_synonym="ECK1929; JW1915" /codon_start=1 /transl_table=11 /product="putative TusA family sulfurtransferase" /protein_id="NP_416440.1" /db_xref="GI:16129877" /db_xref="ASAP:ABE-0006425" /db_xref="UniProtKB/Swiss-Prot:P0AA31" /db_xref="EcoGene:EG11661" /db_xref="GeneID:946909" /translation="MKNIVPDYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCP QSINNIPLDARNHGYTVLDIQQDGPTIRYLIQK" gene 2009821..2010489 /gene="yedK" /locus_tag="b1931" /gene_synonym="ECK1930; JW1916; yedG" /db_xref="EcoGene:EG13278" /db_xref="GeneID:946435" CDS 2009821..2010489 /gene="yedK" /locus_tag="b1931" /gene_synonym="ECK1930; JW1916; yedG" /codon_start=1 /transl_table=11 /product="DUF159 family protein" /protein_id="YP_025310.1" /db_xref="GI:49176171" /db_xref="ASAP:ABE-0006428" /db_xref="UniProtKB/Swiss-Prot:P76318" /db_xref="EcoGene:EG13278" /db_xref="GeneID:946435" /translation="MCGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKV LLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADG WFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFERGDEAEGFLIVTAAADQGLVDIH DRRPLVLSPEAAREWMRQEISGKEASEIAASGCVPANQFSWHPVSRAVGNVKNQGAEL IQPV" gene 2010600..2011079 /gene="yedL" /locus_tag="b1932" /gene_synonym="ECK1931; JW1917" /db_xref="EcoGene:EG13279" /db_xref="GeneID:946437" CDS 2010600..2011079 /gene="yedL" /locus_tag="b1932" /gene_synonym="ECK1931; JW1917" /codon_start=1 /transl_table=11 /product="GNAT family putative N-acetyltransferase" /protein_id="NP_416442.1" /db_xref="GI:16129879" /db_xref="ASAP:ABE-0006433" /db_xref="UniProtKB/Swiss-Prot:P76319" /db_xref="EcoGene:EG13279" /db_xref="GeneID:946437" /translation="MFTIKTDDLTHPAVQALVAYHISGMLQQSPPESSHALDVQKLRN PTVTFWSVWEGEQLAGIGALKLLDDKHGELKSMRTAPNYLRRGVASLILRHILQVAQD RCLHRLSLETGTQAGFTACHQLYLKHGFADCEPFADYRLDPHSRFLSLTLCENNELP" gene complement(2011223..2012351) /gene="yedN" /locus_tag="b4495" /gene_synonym="ECK1932; JW1918; JW5912; yedM" /pseudo /db_xref="EcoGene:EG13281" /db_xref="GeneID:2847704" CDS complement(join(2011223..2011357,2011363..2012040, 2012040..2012351)) /gene="yedN" /locus_tag="b4495" /gene_synonym="ECK1932; JW1918; JW5912; yedM" /note="pseudogene, IpaH/YopM family" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0006435" /db_xref="ASAP:ABE-0006437" /db_xref="ASAP:ABE-0006440" /db_xref="ASAP:ABE-0285096" /db_xref="UniProtKB/Swiss-Prot:P76321" /db_xref="EcoGene:EG13281" /db_xref="GeneID:2847704" gene 2012502..2012663 /gene="intG" /locus_tag="b1936" /gene_synonym="ECK1934; JW5913" /pseudo /db_xref="EcoGene:EG14259" /db_xref="GeneID:946445" CDS 2012502..2012663 /gene="intG" /locus_tag="b1936" /gene_synonym="ECK1934; JW5913" /note="pseudogene, phage integrase family" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0006445" /db_xref="UniProtKB/Swiss-Prot:P76323" /db_xref="EcoGene:EG14259" /db_xref="GeneID:946445" gene complement(2012700..2013014) /gene="fliE" /locus_tag="b1937" /gene_synonym="ECK1935; flaAI; flaN; JW1921" /db_xref="EcoGene:EG11346" /db_xref="GeneID:946446" CDS complement(2012700..2013014) /gene="fliE" /locus_tag="b1937" /gene_synonym="ECK1935; flaAI; flaN; JW1921" /function="structural component; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis; basal-body component, possibly at (MS-ring)-rod junction" /codon_start=1 /transl_table=11 /product="flagellar basal-body component" /protein_id="NP_416447.1" /db_xref="GI:16129884" /db_xref="ASAP:ABE-0006447" /db_xref="UniProtKB/Swiss-Prot:P0A8T5" /db_xref="EcoGene:EG11346" /db_xref="GeneID:946446" /translation="MSAIQGIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDR ISDTQTAARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSM QV" gene 2013229..2014887 /gene="fliF" /locus_tag="b1938" /gene_synonym="ECK1936; flaAII.1; flaBI; JW1922" /db_xref="EcoGene:EG11347" /db_xref="GeneID:946448" CDS 2013229..2014887 /gene="fliF" /locus_tag="b1938" /gene_synonym="ECK1936; flaAII.1; flaBI; JW1922" /function="structural component; Surface structures" /GO_component="GO:0019861 - flagellum; GO:0019866 - organelle inner membrane" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein" /codon_start=1 /transl_table=11 /product="flagellar basal-body MS-ring and collar protein" /protein_id="NP_416448.1" /db_xref="GI:16129885" /db_xref="ASAP:ABE-0006454" /db_xref="UniProtKB/Swiss-Prot:P25798" /db_xref="EcoGene:EG11347" /db_xref="GeneID:946448" /translation="MNATAAQTKSLEWLNRLRANPKIPLIVAGSAAVAVMVALILWAK APDYRTLFSNLSDQDGGAIVSQLTQMNIPYRFSEASGAIEVPADKVHELRLRLAQQGL PKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELSRTIETIGPVKGARVHLAMPKPS LFVREQKSPSASVTVNLLPGRALDEGQISAIVHLVSSAVAGLPPGNVTLVDQGGHLLT QSNTSGRDLNDAQLKYASDVEGRIQRRIEAILSPIVGNGNIHAQVTAQLDFASKEQTE EQYRPNGDESHAALRSRQLNESEQSGSGYPGGVPGALSNQPAPANNAPISTPPANQNN RQQQASTTSNSGPRSTQRNETSNYEVDRTIRHTKMNVGDVQRLSVAVVVNYKTLPDGK PLPLSNEQMKQIEDLTREAMGFSEKRGDSLNVVNSPFNSSDESGGELPFWQQQAFIDQ LLAAGRWLLVLLVAWLLWRKAVRPQLTRRAEAMKAVQQQAQAREEVEDAVEVRLSKDE QLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWINNDHE" gene 2014880..2015875 /gene="fliG" /locus_tag="b1939" /gene_synonym="ECK1937; flaAII.2; flaBII; JW1923" /db_xref="EcoGene:EG11654" /db_xref="GeneID:946451" CDS 2014880..2015875 /gene="fliG" /locus_tag="b1939" /gene_synonym="ECK1937; flaAII.2; flaBII; JW1923" /function="structural component; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis, component of motor switching and energizing, enabling rotation and determining its direction" /codon_start=1 /transl_table=11 /product="flagellar motor switching and energizing component" /protein_id="NP_416449.1" /db_xref="GI:16129886" /db_xref="ASAP:ABE-0006456" /db_xref="UniProtKB/Swiss-Prot:P0ABZ1" /db_xref="EcoGene:EG11654" /db_xref="GeneID:946451" /translation="MSNLTGTDKSVILLMTIGEDRAAEVFKHLSQREVQTLSAAMANV TQISNKQLTDVLAEFEQEAEQFAALNINANDYLRSVLVKALGEERAASLLEDILETRD TASGIETLNFMEPQSAADLIRDEHPQIIATILVHLKRAQAADILALFDERLRHDVMLR IATFGGVQPAALAELTEVLNGLLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAV REFDGELAQKIIDEMFLFENLVDVDDRSIQRLLQEVDSESLLIALKGAEQPLREKFLR NMSQRAADILRDDLANRGPVRLSQVENEQKAILLIVRRLAETGEMVIGSGEDTYV" gene 2015868..2016554 /gene="fliH" /locus_tag="b1940" /gene_synonym="ECK1938; flaAII.3; flaBIII; JW1924" /db_xref="EcoGene:EG11656" /db_xref="GeneID:946456" CDS 2015868..2016554 /gene="fliH" /locus_tag="b1940" /gene_synonym="ECK1938; flaAII.3; flaBIII; JW1924" /function="transport; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis; export of flagellar proteins?" /codon_start=1 /transl_table=11 /product="negative regulator of FliI ATPase activity" /protein_id="NP_416450.2" /db_xref="GI:90111357" /db_xref="ASAP:ABE-0006458" /db_xref="UniProtKB/Swiss-Prot:P31068" /db_xref="EcoGene:EG11656" /db_xref="GeneID:946456" /translation="MSDNLPWKTWTPDDLAPPQAEFVPIVEPEETIIEEAEPSLEQQL AQLQMQAHEQGYQAGIAEGRQQGHKQGYQEGLAQGLEQGLAEAKSQQAPIHARMQQLV SEFQTTLDALDSVIASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGK PQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQE LCRLAAPGVV" gene 2016554..2017927 /gene="fliI" /locus_tag="b1941" /gene_synonym="ECK1939; flaC; JW1925" /db_xref="EcoGene:EG20266" /db_xref="GeneID:946457" CDS 2016554..2017927 /gene="fliI" /locus_tag="b1941" /gene_synonym="ECK1939; flaC; JW1925" /EC_number="3.6.3.14" /function="enzyme; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0015986 - ATP synthesis coupled proton transport" /codon_start=1 /transl_table=11 /product="flagellum-specific ATP synthase" /protein_id="NP_416451.1" /db_xref="GI:16129888" /db_xref="ASAP:ABE-0006460" /db_xref="UniProtKB/Swiss-Prot:P52612" /db_xref="EcoGene:EG20266" /db_xref="GeneID:946457" /translation="MTTRLTRWLTTLDNFEAKMAQLPAVRRYGRLTRATGLVLEATGL QLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVEGVLPGARVYAKNISAE GLQSGKQLPLGPALLGRVLDGSGKPLDGLPSPDTTETGALITPPFNPLQRTPIEHVLD TGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKD FIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTR YAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTEGDD QQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYARVRTFK QLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQGIFERADWEASLQGLE RIFPTVS" gene 2017946..2018389 /gene="fliJ" /locus_tag="b1942" /gene_synonym="ECK1940; flaO; JW1926" /db_xref="EcoGene:EG20267" /db_xref="GeneID:946454" CDS 2017946..2018389 /gene="fliJ" /locus_tag="b1942" /gene_synonym="ECK1940; flaO; JW1926" /function="structural component; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar fliJ protein" /codon_start=1 /transl_table=11 /product="flagellar protein" /protein_id="NP_416452.1" /db_xref="GI:16129889" /db_xref="ASAP:ABE-0006462" /db_xref="UniProtKB/Swiss-Prot:P52613" /db_xref="EcoGene:EG20267" /db_xref="GeneID:946454" /translation="MAEHGALATLKDLAEKEVEDAARLLGEMRRGCQQAEEQLKMLID YQNEYRNNLNSDMSAGITSNRWINYQQFIQTLEKAITQHRQQLNQWTQKVDIALNSWR EKKQRLQAWQTLQERQSTAALLAENRLDQKKMDEFAQRAAMRKPE" gene 2018386..2019513 /gene="fliK" /locus_tag="b1943" /gene_synonym="ECK1941; flaE; JW1927" /db_xref="EcoGene:EG20268" /db_xref="GeneID:946449" CDS 2018386..2019513 /gene="fliK" /locus_tag="b1943" /gene_synonym="ECK1941; flaE; JW1927" /function="structural component; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /codon_start=1 /transl_table=11 /product="flagellar hook-length control protein" /protein_id="NP_416453.1" /db_xref="GI:16129890" /db_xref="ASAP:ABE-0006464" /db_xref="UniProtKB/Swiss-Prot:P52614" /db_xref="EcoGene:EG20268" /db_xref="GeneID:946449" /translation="MIRLAPLITADVDTTTLPGGKASDAAQDFLALLSEALAGETTTD KAAPQLLVATDKPTTKGEPLISDIVSDAQQANLLIPVDETPPVINDEQSTSTPLTTAQ TMALAAVADKNTTKDEKADDLNEDVTASLSALFAMLPGFDNTPKVTDAPSTVLPTEKP TLFTKLTSEQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTAAASPLITPH QTQPLPTVAAPVLSAPLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLK VDDNQAQIQMVSPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGESFSGQQQAASQ QQQSQRTANHEPLAGEDDDTLPVPVSLQGRVTGNSGVDIFA" gene 2019618..2020082 /gene="fliL" /locus_tag="b1944" /gene_synonym="cheC1; ECK1942; flaAI; flaQI; JW1928" /db_xref="EcoGene:EG10322" /db_xref="GeneID:946443" CDS 2019618..2020082 /gene="fliL" /locus_tag="b1944" /gene_synonym="cheC1; ECK1942; flaAI; flaQI; JW1928" /function="putative structure; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_416454.1" /db_xref="GI:16129891" /db_xref="ASAP:ABE-0006467" /db_xref="UniProtKB/Swiss-Prot:P0ABX8" /db_xref="EcoGene:EG10322" /db_xref="GeneID:946443" /translation="MTDYAISKKSKRSLWIPILVFITLAACASAGYSYWHSHQVAADD KAQQRVVPSPVFYALDTFTVNLGDADRVLYIGITLRLKDEATRSRLSEYLPEVRSRLL LLFSRQDAAVLATEEGKKNLIAEIKTTLSTPLVAGQPKQDVTDVLYTAFILR" gene 2020087..2021091 /gene="fliM" /locus_tag="b1945" /gene_synonym="cheC2; ECK1943; flaA; flaAII; flaQII; JW1929" /db_xref="EcoGene:EG10323" /db_xref="GeneID:946442" CDS 2020087..2021091 /gene="fliM" /locus_tag="b1945" /gene_synonym="cheC2; ECK1943; flaA; flaAII; flaQII; JW1929" /function="structural component; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its direction" /codon_start=1 /transl_table=11 /product="flagellar motor switching and energizing component" /protein_id="NP_416455.1" /db_xref="GI:16129892" /db_xref="ASAP:ABE-0006469" /db_xref="UniProtKB/Swiss-Prot:P06974" /db_xref="EcoGene:EG10323" /db_xref="GeneID:946442" /translation="MGDSILSQAEIDALLNGDSEVKDEPTASVSGESDIRPYDPNTQR RVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL NLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKL ALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNIC LPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQIL KLNPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK " gene 2021088..2021501 /gene="fliN" /locus_tag="b1946" /gene_synonym="ECK1944; JW1930; motD" /db_xref="EcoGene:EG10324" /db_xref="GeneID:946423" CDS 2021088..2021501 /gene="fliN" /locus_tag="b1946" /gene_synonym="ECK1944; JW1930; motD" /function="structural component; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis, component of motor switch and energizing, enabling rotation and determining its direction" /codon_start=1 /transl_table=11 /product="flagellar motor switching and energizing component" /protein_id="NP_416456.1" /db_xref="GI:16129893" /db_xref="ASAP:ABE-0006471" /db_xref="UniProtKB/Swiss-Prot:P15070" /db_xref="EcoGene:EG10324" /db_xref="GeneID:946423" /translation="MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAAETVFQQFGG GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN GYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR" gene 2021504..2021869 /gene="fliO" /locus_tag="b1947" /gene_synonym="ECK1945; flbD; JW5316" /db_xref="EcoGene:EG11224" /db_xref="GeneID:946458" CDS 2021504..2021869 /gene="fliO" /locus_tag="b1947" /gene_synonym="ECK1945; flbD; JW5316" /function="putative structure; Surface structures" /GO_component="GO:0019861 - flagellum" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_416457.4" /db_xref="GI:90111358" /db_xref="ASAP:ABE-0006473" /db_xref="UniProtKB/Swiss-Prot:P22586" /db_xref="EcoGene:EG11224" /db_xref="GeneID:946458" /translation="MNNHATVQSSAPVSAAPLLQVSGALIAIIALILAAAWLVKRLGF APKRTGVNGLKISASASLGARERVVVVDVEDARLVLGVTAGQINLLHKLPPSAPTEEI PQTDFQSVMKNLLKRSGRS" gene 2021869..2022606 /gene="fliP" /locus_tag="b1948" /gene_synonym="ECK1946; flaR; JW1932" /db_xref="EcoGene:EG11975" /db_xref="GeneID:946462" CDS 2021869..2022606 /gene="fliP" /locus_tag="b1948" /gene_synonym="ECK1946; flaR; JW1932" /function="putative structure; Surface structures" /GO_component="GO:0019861 - flagellum; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009296 - flagellum assembly; GO:0042330 - taxis" /note="flagellar biosynthesis" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_416458.1" /db_xref="GI:16129895" /db_xref="ASAP:ABE-0006475" /db_xref="UniProtKB/Swiss-Prot:P0AC05" /db_xref="EcoGene:EG11975" /db_xref="GeneID:946462" /translation="MRRLLSVAPVLLWLITPLAFAQLPGITSQPLPGGGQSWSLPVQT LVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMS PVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQ GPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIA LPFKLMLFVLVDGWQLLVGSLAQSFYS" gene 2022616..2022885 /gene="fliQ" /locus_tag="b1949" /gene_synonym="ECK1947; flaQ; JW1933" /db_xref="EcoGene:EG11976" /db_xref="GeneID:946463" CDS 2022616..2022885 /gene="fliQ" /locus_tag="b1949" /gene_synonym="ECK1947; flaQ; JW1933" /function="putative structure; Surface structures" /GO_component="GO:0019861 - flagellum; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009296 - flagellum assembly; GO:0009101 - glycoprotein biosynthetic process" /note="flagellar biosynthesis" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_416459.1" /db_xref="GI:16129896" /db_xref="ASAP:ABE-0006477" /db_xref="UniProtKB/Swiss-Prot:P0AC07" /db_xref="EcoGene:EG11976" /db_xref="GeneID:946463" /translation="MTPESVMMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQI NEMTLSFIPKIIAVFIAIIIAGPWMLNLLLDYVRTLFTNLPYIIG" gene 2022893..2023678 /gene="fliR" /locus_tag="b1950" /gene_synonym="ECK1948; flaP; JW1934" /db_xref="EcoGene:EG11977" /db_xref="GeneID:946464" CDS 2022893..2023678 /gene="fliR" /locus_tag="b1950" /gene_synonym="ECK1948; flaP; JW1934" /function="putative enzyme; Surface structures" /GO_component="GO:0019861 - flagellum; GO:0009274 - peptidoglycan-based cell wall" /note="flagellar biosynthesis" /codon_start=1 /transl_table=11 /product="flagellar export pore protein" /protein_id="NP_416460.1" /db_xref="GI:16129897" /db_xref="ASAP:ABE-0006479" /db_xref="UniProtKB/Swiss-Prot:P33135" /db_xref="EcoGene:EG11977" /db_xref="GeneID:946464" /translation="MLQVTSEQWLSWLNLYFWPLLRVLALISTAPILSERSVPKRVKL GLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEII GLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG GEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGF PLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISELPLI" gene 2023968..2024591 /gene="rcsA" /locus_tag="b1951" /gene_synonym="cpsR; ECK1949; JW1935" /db_xref="EcoGene:EG10820" /db_xref="GeneID:946467" CDS 2023968..2024591 /gene="rcsA" /locus_tag="b1951" /gene_synonym="cpsR; ECK1949; JW1935" /function="regulator; Surface polysaccharides & antigens" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting; GO:0016563 - transcription activator activity" /GO_process="GO:0009242 - colanic acid biosynthetic process; GO:0009248 - K antigen biosynthetic process; GO:0006350 - transcription" /note="positive regulator for ctr capsule biosynthesis, positive transcription factor" /codon_start=1 /transl_table=11 /product="transcriptional regulator of colanic acid capsular biosynthesis" /protein_id="NP_416461.1" /db_xref="GI:16129898" /db_xref="ASAP:ABE-0006482" /db_xref="UniProtKB/Swiss-Prot:P69405" /db_xref="EcoGene:EG10820" /db_xref="GeneID:946467" /translation="MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD SQRPSVVFINEDCFIHDASNSQRIKLIINQHPNTLFIVFMAIANVHFDEYLLVRKNLL ISSKSIKPESLDDILGDILKKETTITSFLNMPTLSLSRTESSMLRMWMAGQGTIQISD QMNIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTDNVTNGIFVNMR" gene complement(2024635..2024823) /gene="dsrB" /locus_tag="b1952" /gene_synonym="ECK1950; JW1936" /db_xref="EcoGene:EG12636" /db_xref="GeneID:946468" CDS complement(2024635..2024823) /gene="dsrB" /locus_tag="b1952" /gene_synonym="ECK1950; JW1936" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416462.1" /db_xref="GI:16129899" /db_xref="ASAP:ABE-0006484" /db_xref="UniProtKB/Swiss-Prot:P0AEG8" /db_xref="EcoGene:EG12636" /db_xref="GeneID:946468" /translation="MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYPLGI WFFNEAGHQDGIFVEKAE" gene 2024986..2025213 /gene="yodD" /locus_tag="b1953" /gene_synonym="ECK1951; JW5317" /db_xref="EcoGene:EG14387" /db_xref="GeneID:946469" CDS 2024986..2025213 /gene="yodD" /locus_tag="b1953" /gene_synonym="ECK1951; JW5317" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416463.4" /db_xref="GI:90111359" /db_xref="ASAP:ABE-0006488" /db_xref="UniProtKB/Swiss-Prot:P64519" /db_xref="EcoGene:EG14387" /db_xref="GeneID:946469" /translation="MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHV SVDGREYHTWRELADAFELDIHDFSVSEVNR" gene complement(2025227..2025313) /gene="dsrA" /locus_tag="b1954" /gene_synonym="ECK1952; IS095; JWR0036" /db_xref="EcoGene:EG31118" /db_xref="GeneID:946470" ncRNA complement(2025227..2025313) /ncRNA_class="antisense_RNA" /gene="dsrA" /locus_tag="b1954" /gene_synonym="ECK1952; IS095; JWR0036" /product="sRNA antisense regulator enhances translation of RpoS, Hfq-dependent" /note="silencer of rcsA gene, interacts with rpoS translation; component of acid resistance regulatory circuit" /function="2.2.7 information transfer; RNA related; antisense RNA" /function="3.1.3.6 regulation; type of regulation; posttranscriptional; antisense RNA" /function="6.3 cell structure; surface antigens (ECA, O antigen of LPS)" /function="7.1 location of gene products; cytoplasm" /function="regulatory RNA; regulates transcriptional silencing by H-NS protein, and enhances translation of RpoS" /function="RNA; Surface polysaccharides & antigens" /db_xref="ASAP:ABE-0006490" /db_xref="EcoGene:EG31118" /db_xref="GeneID:946470" gene 2025511..2026326 /gene="yedP" /locus_tag="b1955" /gene_synonym="ECK1953; JW1938" /db_xref="EcoGene:EG14039" /db_xref="GeneID:946472" CDS 2025511..2026326 /gene="yedP" /locus_tag="b1955" /gene_synonym="ECK1953; JW1938" /codon_start=1 /transl_table=11 /product="putative mannosyl-3-phosphoglycerate phosphatase" /protein_id="NP_416464.1" /db_xref="GI:16129901" /db_xref="ASAP:ABE-0006493" /db_xref="UniProtKB/Swiss-Prot:P76329" /db_xref="EcoGene:EG14039" /db_xref="GeneID:946472" /translation="MFSIQQPLLVFSDLDGTLLDSHSYDWQPAAPWLTRLREANVPVI LCSSKTSAEMLYLQKTLGLQGLPLIAENGAVIQLAEQWQEIDGFPRIISGISHGEISL VLNTLREKEHFKFTTFDDVDDATIAEWTGLSRSQAALTQLHEASVTLIWRDSDERMAQ FTARLNELGLQFMQGARFWHVLDASAGKDQAANWIIATYQQLSGKRPTTLGLGDGPND APLLEVMDYAVIVKGLNREGVHLHDEDPARVWRTQREGPEGWREGLDHFFSAR" gene complement(2026323..2028017) /gene="yedQ" /locus_tag="b1956" /gene_synonym="ECK1954; JW5832" /db_xref="EcoGene:EG14040" /db_xref="GeneID:946471" CDS complement(2026323..2028017) /gene="yedQ" /locus_tag="b1956" /gene_synonym="ECK1954; JW5832" /codon_start=1 /transl_table=11 /product="putative membrane-anchored diguanylate cyclase" /protein_id="NP_416465.2" /db_xref="GI:90111360" /db_xref="ASAP:ABE-0006495" /db_xref="UniProtKB/Swiss-Prot:P76330" /db_xref="EcoGene:EG14040" /db_xref="GeneID:946471" /translation="MQHETKMENQSWLKKLARRLGPGHVVNLCFIVVLLFSTLLTWRE VVVLEDAYISSQRNHLENVANALDKHLQYNVDKLIFLRNGMREALVAPLDFTSLRDAV TEFEQHRDEHAWKIELNRRRTLPVNGVSDALVSEGNLLSRENESLDNEITAALEVGYL LRLAHNSSSMVEQAMYVSRAGFYVSTQPTLFTRNVPTRYYGYVTQPWFIGHSQRENRH RAVRWFTSQPEHASNTEPQVTVSVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLD GEYQLYDSKLRFLTSSNPDHPTGNIFDPRELALLAQAMEHDTRGGIRMDSRYVSWERL DHFDGVLVRVHTLSEGVRGDFGSISIALTLLWALFTTMLLISWYVIRRMVSNMYVLQS SLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQ AGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKE MLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRVFASDNA" gene complement(2028188..2028370) /gene="yodC" /locus_tag="b1957" /gene_synonym="ECK1955; JW1940" /db_xref="EcoGene:EG14307" /db_xref="GeneID:946466" CDS complement(2028188..2028370) /gene="yodC" /locus_tag="b1957" /gene_synonym="ECK1955; JW1940" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416466.1" /db_xref="GI:16129903" /db_xref="ASAP:ABE-0006498" /db_xref="UniProtKB/Swiss-Prot:P64517" /db_xref="EcoGene:EG14307" /db_xref="GeneID:946466" /translation="MSFMVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGYGVKREAFH ETELVPGEGSRSAEEV" gene complement(2028449..2029366) /gene="yedI" /locus_tag="b1958" /gene_synonym="ECK1956; JW1941" /db_xref="EcoGene:EG12709" /db_xref="GeneID:946465" CDS complement(2028449..2029366) /gene="yedI" /locus_tag="b1958" /gene_synonym="ECK1956; JW1941" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="DUF808 family inner membrane protein" /protein_id="NP_416467.1" /db_xref="GI:16129904" /db_xref="ASAP:ABE-0006500" /db_xref="UniProtKB/Swiss-Prot:P46125" /db_xref="EcoGene:EG12709" /db_xref="GeneID:946465" /translation="MLLAGSSLLTLLDDIATLLDDISVMGKLAAKKTAGVLGDDLSLN AQQVSGVRANRELPVVWGVAKGSLINKVILVPLALIISAFIPWAITPLLMIGGAFLCF EGVEKVLHMLEARKHKEDPAQSQQRLEKLAAQDPLKFEKDKIKGAIRTDFILSAEIVA ITLGIVAEAPLLNQVLVLSGIALVVTVGVYGLVGVIVKIDDLGYWLAEKSSALMQALG KGLLIIAPWLMKALSIVGTLAMFLVGGGIVVHGIAPLHHAIEHFAGQQSAVVAMILPT VLNLILGFIIGGIVVLGVKAVEKMRGQAH" gene 2029539..2030459 /gene="yedA" /locus_tag="b1959" /gene_synonym="ECK1957; JW1942" /db_xref="EcoGene:EG11141" /db_xref="GeneID:946461" CDS 2029539..2030459 /gene="yedA" /locus_tag="b1959" /gene_synonym="ECK1957; JW1942" /function="putative membrane; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /note="putative transmembrane subunit" /codon_start=1 /transl_table=11 /product="amino acid exporter for phenylalanine, threonine" /protein_id="NP_416468.1" /db_xref="GI:16129905" /db_xref="ASAP:ABE-0006505" /db_xref="UniProtKB/Swiss-Prot:P0AA70" /db_xref="EcoGene:EG11141" /db_xref="GeneID:946461" /translation="MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRF LAAGILLLAFLLLRGHKLPPLRPLLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVV VATVPLFTLCFSRLFGIKTRKLEWVGIAIGLAGIIMLNSGGNLSGNPWGAILILIGSI SWAFGSVYGSRITLPVGMMAGAIEMLAAGVVLMIASMIAGEKLTALPSLSGFLAVGYL ALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLGTGLGGETLSKIEWLALGVI VFAVVLVTLGKYLFPAKPVVAPVIQDASSE" gene complement(2030448..2030918) /gene="vsr" /locus_tag="b1960" /gene_synonym="ECK1958; JW1943" /db_xref="EcoGene:EG11068" /db_xref="GeneID:946476" CDS complement(2030448..2030918) /gene="vsr" /locus_tag="b1960" /gene_synonym="ECK1958; JW1943" /EC_number="3.1.-.-" /function="enzyme; Degradation of DNA" /GO_process="GO:0006308 - DNA catabolic process; GO:0006281 - DNA repair" /note="DNA mismatch endonuclease, patch repair protein" /codon_start=1 /transl_table=11 /product="DNA mismatch endonuclease of very short patch repair" /protein_id="NP_416469.1" /db_xref="GI:16129906" /db_xref="ASAP:ABE-0006507" /db_xref="UniProtKB/Swiss-Prot:P09184" /db_xref="EcoGene:EG11068" /db_xref="GeneID:946476" /translation="MADVHDKATRSKNMRAIATRDTAIEKRLASLLTGQGLAFRVQDA SLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDIS RLQELGWRVLIVWECALRGREKLTDEALTERLEEWICGEGASAQIDTQGIHLLA" gene complement(2030899..2032317) /gene="dcm" /locus_tag="b1961" /gene_synonym="ECK1959; JW1944; mec" /db_xref="EcoGene:EG10211" /db_xref="GeneID:946479" CDS complement(2030899..2032317) /gene="dcm" /locus_tag="b1961" /gene_synonym="ECK1959; JW1944; mec" /EC_number="2.1.1.37" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006306 - DNA methylation" /codon_start=1 /transl_table=11 /product="DNA cytosine methyltransferase" /protein_id="NP_416470.1" /db_xref="GI:16129907" /db_xref="ASAP:ABE-0006509" /db_xref="UniProtKB/Swiss-Prot:P0AED9" /db_xref="EcoGene:EG10211" /db_xref="GeneID:946479" /translation="MQENISVTDSYSTGNAAQAMLEKLLQIYDVKTLVAQLNGVGENH WSAAILKRALANDSAWHRLSEKEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRG FESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHKEGVSDEAAAEH IRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRP AMFVLENVKNLKSHDQGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHR ERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPVLWKYLYR YAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDP LNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLL EPKIKQAVALRQQEAQHGRRSR" gene complement(2032384..2033079) /gene="yedJ" /locus_tag="b1962" /gene_synonym="ECK1960; JW1945" /db_xref="EcoGene:EG12710" /db_xref="GeneID:946478" CDS complement(2032384..2033079) /gene="yedJ" /locus_tag="b1962" /gene_synonym="ECK1960; JW1945" /codon_start=1 /transl_table=11 /product="putative HD superfamily phosphohydrolase" /protein_id="NP_416471.1" /db_xref="GI:16129908" /db_xref="ASAP:ABE-0006512" /db_xref="UniProtKB/Swiss-Prot:P46144" /db_xref="EcoGene:EG12710" /db_xref="GeneID:946478" /translation="MDLQHWQAQFENWLKNHHQHQDAAHDVCHFRRVWATAQKLAADD DVDMLVILTACYFHDIVSLAKNHPQRQRSSILAAEETRRLLREEFEQFPAEKIEAVCH AIAAHSFSAQIAPLTTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDGEDPFAQ HRPLDDKRYALDHFQTKLLKLPQTMQTARGKQLAQHNAHFLVEFMAKLSAELAGENEG VDHKVIDAFSSAG" gene complement(2033119..2033484) /gene="yedR" /locus_tag="b1963" /gene_synonym="ECK1961; JW1946" /db_xref="EcoGene:EG14041" /db_xref="GeneID:946477" CDS complement(2033119..2033484) /gene="yedR" /locus_tag="b1963" /gene_synonym="ECK1961; JW1946" /codon_start=1 /transl_table=11 /product="inner membrane protein" /protein_id="NP_416472.2" /db_xref="GI:90111361" /db_xref="ASAP:ABE-0006514" /db_xref="UniProtKB/Swiss-Prot:P76334" /db_xref="EcoGene:EG14041" /db_xref="GeneID:946477" /translation="MEKCDFYHIIVLSLNFPGYLKMEYGSTKMEERLSRSPGGKLALW AFYTWCGYFVWAMARYIWVMSRIPDAPVSGFESDLGSTAGKWLGALVGFLFMALVGAL LGSIAWYTRPRPARSRRYE" gene 2033649..2033739 /gene="rseX" /locus_tag="b4603" /gene_synonym="ECK4412; IS96" /db_xref="EcoGene:EG31170" /db_xref="GeneID:5061507" ncRNA 2033649..2033739 /ncRNA_class="antisense_RNA" /gene="rseX" /locus_tag="b4603" /gene_synonym="ECK4412; IS96" /product="sRNA antisense regulator of ompA and ompC translation, Hfq-dependent" /db_xref="EcoGene:EG31170" /db_xref="GeneID:5061507" gene 2034051..2035243 /gene="yedS" /locus_tag="b4496" /gene_synonym="ECK1962; JW1948; JW1949; JW5319; yedT" /pseudo /db_xref="EcoGene:EG14042" /db_xref="GeneID:2847763" CDS join(2034051..2034713,2034713..2035243) /gene="yedS" /locus_tag="b4496" /gene_synonym="ECK1962; JW1948; JW1949; JW5319; yedT" /note="pseudogene, outer membrane protein homology; putative outer membrane protein" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0006518" /db_xref="ASAP:ABE-0006521" /db_xref="ASAP:ABE-0006526" /db_xref="ASAP:ABE-0285097" /db_xref="UniProtKB/Swiss-Prot:P76335" /db_xref="EcoGene:EG14042" /db_xref="GeneID:2847763" gene 2035835..2036686 /gene="hchA" /locus_tag="b1967" /gene_synonym="ECK1963; gloC; JW1950; yedU; yzzC" /db_xref="EcoGene:EG11755" /db_xref="GeneID:946481" CDS 2035835..2036686 /gene="hchA" /locus_tag="b1967" /gene_synonym="ECK1963; gloC; JW1950; yedU; yzzC" /codon_start=1 /transl_table=11 /product="glyoxalase III and Hsp31 molecular chaperone" /protein_id="NP_416476.1" /db_xref="GI:16129913" /db_xref="ASAP:ABE-0006529" /db_xref="UniProtKB/Swiss-Prot:P31658" /db_xref="EcoGene:EG11755" /db_xref="GeneID:946481" /translation="MTVQTSKNPQVDIAEDNAFFPSEYSLSQYTSPVSDLDGVDYPKP YRGKHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMT KFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIG LPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSICAFPDAADKQTP EIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKLLTGDSPFAANALGKLAAQE MLAAYAG" gene complement(2036794..2038152) /gene="yedV" /locus_tag="b1968" /gene_synonym="ECK1964; JW1951" /db_xref="EcoGene:EG14044" /db_xref="GeneID:946487" CDS complement(2036794..2038152) /gene="yedV" /locus_tag="b1968" /gene_synonym="ECK1964; JW1951" /function="putative regulator; Not classified" /GO_process="GO:0006464 - protein modification process" /note="putative 2-component sensor protein" /codon_start=1 /transl_table=11 /product="putative sensory kinase in two-component regulatory system with YedW" /protein_id="NP_416477.1" /db_xref="GI:16129914" /db_xref="ASAP:ABE-0006531" /db_xref="UniProtKB/Swiss-Prot:P76339" /db_xref="EcoGene:EG14044" /db_xref="GeneID:946487" /translation="MKRLSITVRLTLLFILLLSVAGAGIVWTLYNGLASELKWRDDTT LINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHGDSINKIVNRTNVSDGMLN NIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKIN SIIICIVAIVLCSVLSPLLIRTGLREIKKLSGVTEALNYNDSREPVEVSALPRELKPL GQALNKMHHALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIA GNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICF KVECNQQIFADKILLQRMLSNLIVNAIRYSPEKSRIHITSFLDTNSYLNIDIASPGTK INEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLNKHNVFRITLPQ RN" gene complement(2038152..2038823) /gene="yedW" /locus_tag="b1969" /gene_synonym="ECK1965; JW5322" /db_xref="EcoGene:EG14045" /db_xref="GeneID:946486" CDS complement(2038152..2038823) /gene="yedW" /locus_tag="b1969" /gene_synonym="ECK1965; JW5322" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="putative 2-component transcriptional regulator" /codon_start=1 /transl_table=11 /product="response regulator family protein" /protein_id="NP_416478.2" /db_xref="GI:90111362" /db_xref="ASAP:ABE-0006533" /db_xref="UniProtKB/Swiss-Prot:P76340" /db_xref="EcoGene:EG14045" /db_xref="GeneID:946486" /translation="MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD YALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPF SFSELLARVRAQLRQHHALNSTLEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLA SRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF VAVKK" gene 2038956..2039369 /gene="hiuH" /locus_tag="b1970" /gene_synonym="ECK1966; JW1953; yedX" /db_xref="EcoGene:EG14046" /db_xref="GeneID:946485" CDS 2038956..2039369 /gene="hiuH" /locus_tag="b1970" /gene_synonym="ECK1966; JW1953; yedX" /function="enzyme; Purine catabolism" /codon_start=1 /transl_table=11 /product="hydroxyisourate hydrolase" /protein_id="NP_416479.1" /db_xref="GI:16129916" /db_xref="ASAP:ABE-0006537" /db_xref="UniProtKB/Swiss-Prot:P76341" /db_xref="EcoGene:EG14046" /db_xref="GeneID:946485" /translation="MLKRYLVLSVATAAFSLPSLVNAAQQNILSVHILNQQTGKPAAD VTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYFKKQNLES FFPEIPVEFHINKVNEHYHVPLLLSQYGYSTYRGS" gene 2039478..2040482 /gene="yedY" /locus_tag="b1971" /gene_synonym="ECK1967; JW1954" /db_xref="EcoGene:EG14047" /db_xref="GeneID:946484" CDS 2039478..2040482 /gene="yedY" /locus_tag="b1971" /gene_synonym="ECK1967; JW1954" /function="putative enzyme; Not classified" /note="putative reductase" /codon_start=1 /transl_table=11 /product="membrane-anchored, periplasmic TMAO, DMSO reductase" /protein_id="NP_416480.1" /db_xref="GI:16129917" /db_xref="ASAP:ABE-0006540" /db_xref="UniProtKB/Swiss-Prot:P76342" /db_xref="EcoGene:EG14047" /db_xref="GeneID:946484" /translation="MKKNQFLKESDVTAESVFFMKRRQVLKALGISATALSLPHAAHA DLLSWFKGNDRPPAPAGKALEFSKPAAWQNNLPLTPADKVSGYNNFYEFGLDKADPAA NAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFP LHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLT LMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYG FYANVNPYVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYAAQVASLYRGLDLRENF " gene 2040483..2041118 /gene="yedZ" /locus_tag="b1972" /gene_synonym="ECK1968; JW1955" /db_xref="EcoGene:EG14048" /db_xref="GeneID:946483" CDS 2040483..2041118 /gene="yedZ" /locus_tag="b1972" /gene_synonym="ECK1968; JW1955" /codon_start=1 /transl_table=11 /product="inner membrane heme subunit for periplasmic YedYZ reductase" /protein_id="NP_416481.1" /db_xref="GI:16129918" /db_xref="ASAP:ABE-0006542" /db_xref="UniProtKB/Swiss-Prot:P76343" /db_xref="EcoGene:EG14048" /db_xref="GeneID:946483" /translation="MRLTAKQVTWLKVCLHLAGLLPFLWLVWAINHGGLGADPVKDIQ HFTGRTALKFLLATLLITPLARYAKQPLLIRTRRLLGLWCFAWATLHLTSYALLELGV NNLALLGKELITRPYLTLGIISWVILLALAFTSTQAMQRKLGKHWQQLHNFVYLVAIL APIHYLWSVKIISPQPLIYAGLAVLLLALRYKKLRSLFNRLRKQVHNKLSV" repeat_region 2041152..2041185 /note="REP142 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 2041375..2042025 /gene="zinT" /locus_tag="b1973" /gene_synonym="ECK1969; JW1956; yodA" /db_xref="EcoGene:EG14049" /db_xref="GeneID:946480" CDS 2041375..2042025 /gene="zinT" /locus_tag="b1973" /gene_synonym="ECK1969; JW1956; yodA" /codon_start=1 /transl_table=11 /product="zinc and cadmium binding protein, periplasmic" /protein_id="NP_416482.1" /db_xref="GI:16129919" /db_xref="ASAP:ABE-0006546" /db_xref="UniProtKB/Swiss-Prot:P76344" /db_xref="EcoGene:EG14049" /db_xref="GeneID:946480" /translation="MAIRLYKLAVALGVFIVSAPAFSHGHHSHGKPLTEVEQKAANGV FDDANVQNRTLSDWDGVWQSVYPLLQSGKLDPVFQKKADADKTKTFAEIKDYYHKGYA TDIEMIGIEDGIVEFHRNNETTSCKYDYDGYKILTYKSGKKGVRYLFECKDPESKAPK YIQFSDHIIAPRKSSHFHIFMGNDSQQSLLNEMENWPTYYPYQLSSEEVVEEMMSH" gene 2042368..2042898 /gene="yodB" /locus_tag="b1974" /gene_synonym="ECK1970; JW5323" /db_xref="EcoGene:EG14050" /db_xref="GeneID:946491" CDS 2042368..2042898 /gene="yodB" /locus_tag="b1974" /gene_synonym="ECK1970; JW5323" /function="putative enzyme; Not classified" /GO_process="GO:0017004 - cytochrome complex assembly" /note="cytochrome b561 homolog 1" /codon_start=1 /transl_table=11 /product="cytochrome b561 homolog" /protein_id="NP_416483.4" /db_xref="GI:90111363" /db_xref="ASAP:ABE-0006552" /db_xref="UniProtKB/Swiss-Prot:P76345" /db_xref="EcoGene:EG14050" /db_xref="GeneID:946491" /translation="MNRFSKTQIYLHWITLLFVAITYAAMELRGWFPKGSSTYLLMRE THYNAGIFVWVLMFSRLIIKHRYSDPSIVPPPPAWQMKAASLMHIMLYITFLALPLLG IALMAYSGKSWSFLGFNVSPFVTPNSEIKALIKNIHETWANIGYFLIAAHAGAALFHH YIQKDNTLLRMMPRRK" gene complement(2043468..2043557) /gene="serU" /locus_tag="b1975" /gene_synonym="ECK1971; ftsM; JWR0037; Su-1; su1; supD; supH" /db_xref="EcoGene:EG30094" /db_xref="GeneID:946492" tRNA complement(2043468..2043557) /gene="serU" /locus_tag="b1975" /gene_synonym="ECK1971; ftsM; JWR0037; Su-1; su1; supD; supH" /product="tRNA-Ser" /note="anticodon: CGA" /db_xref="ASAP:ABE-0006554" /db_xref="EcoGene:EG30094" /db_xref="GeneID:946492" gene 2043651..2044448 /gene="mtfA" /locus_tag="b1976" /gene_synonym="ECK1972; JW1958; yeeI" /db_xref="EcoGene:EG13377" /db_xref="GeneID:946489" CDS 2043651..2044448 /gene="mtfA" /locus_tag="b1976" /gene_synonym="ECK1972; JW1958; yeeI" /codon_start=1 /transl_table=11 /product="anti-repressor for DgsA(Mlc)" /protein_id="NP_416484.2" /db_xref="GI:90111364" /db_xref="ASAP:ABE-0006558" /db_xref="UniProtKB/Swiss-Prot:P76346" /db_xref="EcoGene:EG13377" /db_xref="GeneID:946489" /translation="MIKWPWKVQESAHQTALPWQEALSIPLLTCLTEQEQSKLVTLAE RFLQQKRLVPLQGFELDSLRSCRIALLFCLPVLELGLEWLDGFHEVLIYPAPFVVDDE WEDDIGLVHNQRIVQSGQSWQQGPIVLNWLDIQDSFDASGFNLIIHEVAHKLDTRNGD RASGVPFIPLREVAGWEHDLHAAMNNIQEEIELVGENAASIDAYAASDPAECFAVLSE YFFSAPELFAPRFPSLWQRFCQFYQQDPLQRLHHANDTDSFSATNVH" gene 2044549..2044624 /gene="asnT" /locus_tag="b1977" /gene_synonym="ECK1973; JWR0038" /db_xref="EcoGene:EG30020" /db_xref="GeneID:946488" tRNA 2044549..2044624 /gene="asnT" /locus_tag="b1977" /gene_synonym="ECK1973; JWR0038" /product="tRNA-Asn" /note="anticodon: GUU" /db_xref="ASAP:ABE-0006560" /db_xref="EcoGene:EG30020" /db_xref="GeneID:946488" gene 2044938..2052014 /gene="yeeJ" /locus_tag="b1978" /gene_synonym="ECK1974; JW5833" /db_xref="EcoGene:EG13378" /db_xref="GeneID:946498" CDS 2044938..2052014 /gene="yeeJ" /locus_tag="b1978" /gene_synonym="ECK1974; JW5833" /function="putative factor; Not classified" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent" /note="putative factor" /codon_start=1 /transl_table=11 /product="putative adhesin" /protein_id="NP_416485.4" /db_xref="GI:145698281" /db_xref="ASAP:ABE-0006563" /db_xref="UniProtKB/Swiss-Prot:P76347" /db_xref="EcoGene:EG13378" /db_xref="GeneID:946498" /translation="MATKKRSGEEINDRQILCGMGIKLRRLTAGICLITQLAFPMAAA AQGVVNAATQQPVPAQIAIANANTVPYTLGALESAQSVAERFGISVAELRKLNQFRTF ARGFDNVRQGDELDVPAQVSEKKLTPPPGNSSDNLEQQIASTSQQIGSLLAEDMNSEQ AANMARGWASSQASGAMTDWLSRFGTARITLGVDEDFSLKNSQFDFLHPWYETPDNLF FSQHTLHRTDERTQINNGLGWRHFTPTWMSGINFFFDHDLSRYHSRAGIGAEYWRDYL KLSSNGYLRLTNWRSAPELDNDYEARPANGWDVRAESWLPAWPHLGGKLVYEQYYGDE VALFDKDDRQSNPHAITAGLNYTPFPLMTFSAEQRQGKQGENDTRFAVDFTWQPGSAM QKQLDPNEVAARRSLAGSRYDLVDRNNNIVLEYRKKELVRLTLTDPVTGKSGEVKSLV SSLQTKYALKGYNVEATALEAAGGKVVTTGKDILVTLPAYRFTSTPETDNTWPIEVTA EDVKGNLSNREQSMVVVQAPTLSQKDSSVSLSTQTLNADSHSTATLTFIAHDAAGNPV VGLVLSTRHEGVQDITLSDWKDNGDGSYTQILTTGAMSGTLTLMPQLNGVDAAKAPAV VNIISVSSSRTHSSIKIDKDRYLSGNPIEVTVELRDENDKPVKEQKQQLNNAVSIDNV KPGVTTDWKETADGVYKATYTAYTKGSGLTAKLLMQNWNEDLHTAGFIIDANPQSAKI ATLSASNNGVLANENAANTVSVNVADEGSNPINDHTVTFAVLSGSATSFNNQNTAKTD VNGLATFDLKSSKQEDNTVEVTLENGVKQTLIVSFVGDSSTAQVDLQKSKNEVVADGN DSVTMTATVRDAKGNLLNDVMVTFNVNSAEAKLSQTEVNSHDGIATATLTSLKNGDYR VTASVSSGSQANQQVNFIGDQSTAALTLSVPSGDITVTNTAPQYMTATLQDKNGNPLK DKEITFSVPNDVASKFSISNGGKGMTDSNGVAIASLTGTLAGTHMIMARLANSNVSDA QPMTFVADKDRAVVVLQTSKAEIIGNGVDETTLTATVKDPSNHPVAGITVNFTMPQDV AANFTLENNGIAITQANGEAHVTLKGKKAGTHTVTATLGNNNTSDSQPVTFVADKASA QVVLQISKDEITGNGVDSATLTATVKDQFDNEVNNLPVTFSSASSGLTLTPGVSNTNE SGIAQATLAGVAFGEKTVTASLANNGASDNKTVHFIGDTAAAKIIELAPVPDSIIAGT PQNSSGSVITATVVDNNGFPVKGVTVNFTSNAATAEMTNGGQAVTNEQGKATVTYTNT RSSIESGARPDTVEASLENGSSTLSTSINVNADASTAHLTLLQALFDTVSAGETTSLY IEVKDNYGNGVPQQEVTLSVSPSEGVTPSNNAIYTTNHDGNFYASFTATKAGVYQLTA TLENGDSMQQTVTYVPNVANAEITLAASKDPVIADNNDLTTLTATVADTEGNAIANTE VTFTLPEDVKANFTLSDGGKVITDAEGKAKVTLKGTKAGAHTVTASMTGGKSEQLVVN FIADTLTAQVNLNVTEDNFIANNVGMTRLQATVTDGNGNPLANEAVTFTLPADVSASF TLGQGGSAITDINGKAEVTLSGTKSGTYPVTVSVNNYGVSDTKQVTLIADAGTAKLAS LTSVYSFVVSTTEGATMTASVTDANGNPVEGIKVNFRGTSVTLSSTSVETDDRGFAEI LVTSTEVGLKTVSASLADKPTEVISRLLNASADVNSATITSLEIPEGQVMVAQDVAVK AHVNDQFGNPVAHQPVTFSAEPSSQMIISQNTVSTNTQGVAEVTMTPERNGSYMVKAS LPNGASLEKQLEAIDEKLTLTASSPLIGVYAPTGATLTATLTSANGTPVEGQVINFSV TPEGATLSGGKVRTNSSGQAPVVLTSNKVGTYTVTASFHNGVTIQTQTTVKVTGNSST AHVASFIADPSTIAATNTDLSTLKATVEDGSGNLIEGLTVYFALKSGSATLTSLTAVT DQNGIATTSVKGAMTGSVTVSAVTTAGGMQTVDITLVAGPADTSQSVLKSNRSSLKGD YTDSAELRLVLHDISGNPIKVSEGMEFVQSGTNVPYIKISAIDYSLNINGDYKATVTG GGEGIATLIPVLNGVHQAGLSTTIQFTRAEDKIMSGTVSVNGTDLPTTTFPSQGFTGA YYQLNNDNFAPGKTAADYEFSSSASWVDVDATGKVTFKNVGSNSERITATPKSGGPSY VYEIRVKSWWVNAGEAFMIYSLAENFCSSNGYTLPRANYLNHCSSRGIGSLYSEWGDM GHYTTDAGFQSNMYWSSSPANSSEQYVVSLATGDQSVFEKLGFAYATCYKNL" gene complement(2052276..2053328) /gene="yeeL" /locus_tag="b4497" /gene_synonym="ECK1975; JW1961; JW5325; yeeK" /pseudo /db_xref="EcoGene:EG13380" /db_xref="GeneID:2847764" CDS complement(2052276..2053328) /gene="yeeL" /locus_tag="b4497" /gene_synonym="ECK1975; JW1961; JW5325; yeeK" /note="pseudogene, glycosyltransferase homology" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0006565" /db_xref="ASAP:ABE-0006568" /db_xref="ASAP:ABE-0285098" /db_xref="UniProtKB/Swiss-Prot:P76349" /db_xref="EcoGene:EG13380" /db_xref="GeneID:2847764" gene 2053643..2054959 /gene="shiA" /locus_tag="b1981" /gene_synonym="ECK1976; JW1962; yeeM" /db_xref="EcoGene:EG20205" /db_xref="GeneID:946495" CDS 2053643..2054959 /gene="shiA" /locus_tag="b1981" /gene_synonym="ECK1976; JW1962; yeeM" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009423 - chorismate biosynthetic process" /codon_start=1 /transl_table=11 /product="shikimate transporter" /protein_id="NP_416488.1" /db_xref="GI:16129925" /db_xref="ASAP:ABE-0006572" /db_xref="UniProtKB/Swiss-Prot:P76350" /db_xref="EcoGene:EG20205" /db_xref="GeneID:946495" /translation="MDSTLISTRPDEGTLSLSRARRAALGSFAGAVVDWYDFLLYGIT AALVFNREFFPQVSPAMGTLAAFATFGVGFLFRPLGGVIFGHFGDRLGRKRMLMLTVW MMGIATALIGILPSFSTIGWWAPILLVTLRAIQGFAVGGEWGGAALLSVESAPKNKKA FYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLGALWVRNG MEESAEFEQQQHYQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNY STQNMGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGTLIGTLSAFPFF MALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVG GGFTPFIAAALITYFAGNWHSVAIYLLAGCLISAMTALLMKDSQRA" gene 2055061..2056515 /gene="amn" /locus_tag="b1982" /gene_synonym="ECK1977; JW1963" /db_xref="EcoGene:EG10039" /db_xref="GeneID:946508" CDS 2055061..2056515 /gene="amn" /locus_tag="b1982" /gene_synonym="ECK1977; JW1963" /EC_number="3.2.2.4" /function="enzyme; Salvage of nucleosides and nucleotides" /experiment="N-terminus verified by Edman degradation: PMID 2690948" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="AMP nucleosidase" /protein_id="NP_416489.1" /db_xref="GI:16129926" /db_xref="ASAP:ABE-0006579" /db_xref="UniProtKB/Swiss-Prot:P0AE12" /db_xref="EcoGene:EG10039" /db_xref="GeneID:946508" /translation="MNNKGSGLTPAQALDKLDALYEQSVVALRNAIGNYITSGELPDE NARKQGLFVYPSLTVTWDGSTTNPPKTRAFGRFTHAGSYTTTITRPTLFRSYLNEQLT LLYQDYGAHISVQPSQHEIPYPYVIDGSELTLDRSMSAGLTRYFPTTELAQIGDETAD GIYHPTEFSPLSHFDARRVDFSLARLRHYTGTPVEHFQPFVLFTNYTRYVDEFVRWGC SQILDPDSPYIALSCAGGNWITAETEAPEEAISDLAWKKHQMPAWHLITADGQGITLV NIGVGPSNAKTICDHLAVLRPDVWLMIGHCGGLRESQAIGDYVLAHAYLRDDHVLDAV LPPDIPIPSIAEVQRALYDATKLVSGRPGEEVKQRLRTGTVVTTDDRNWELRYSASAL RFNLSRAVAIDMESATIAAQGYRFRVPYGTLLCVSDKPLHGEIKLPGQANRFYEGAIS EHLQIGIRAIDLLRAEGDRLHSRKLRTFNEPPFR" gene 2056858..2057574 /gene="yeeN" /locus_tag="b1983" /gene_synonym="ECK1978; JW1964" /db_xref="EcoGene:EG13382" /db_xref="GeneID:946493" CDS 2056858..2057574 /gene="yeeN" /locus_tag="b1983" /gene_synonym="ECK1978; JW1964" /codon_start=1 /transl_table=11 /product="UPF0082 family protein" /protein_id="NP_416490.1" /db_xref="GI:16129927" /db_xref="ASAP:ABE-0006582" /db_xref="UniProtKB/Swiss-Prot:P0A8A2" /db_xref="EcoGene:EG13382" /db_xref="GeneID:946493" /translation="MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELN TSLKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSN VNRTIANVRTIFNKKGGNIGAAGSVSYMFDNTGVIVFKGTDPDHIFEILLEAEVDVRD VTEEEGNIVIYTEPTDLHKGIAALKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGL VDALEDDDDVQKVYHNVANL" gene complement(2058027..2058102) /gene="asnW" /locus_tag="b1984" /gene_synonym="ECK1979; JWR0039" /db_xref="EcoGene:EG31120" /db_xref="GeneID:946494" tRNA complement(2058027..2058102) /gene="asnW" /locus_tag="b1984" /gene_synonym="ECK1979; JWR0039" /product="tRNA-Asn" /note="anticodon: GUU" /db_xref="ASAP:ABE-0006584" /db_xref="EcoGene:EG31120" /db_xref="GeneID:946494" gene complement(2058203..2059690) /gene="yeeO" /locus_tag="b1985" /gene_synonym="ECK1980; JW1965" /db_xref="EcoGene:EG13383" /db_xref="GeneID:946506" CDS complement(2058203..2059690) /gene="yeeO" /locus_tag="b1985" /gene_synonym="ECK1980; JW1965" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative multdrug exporter, MATE family" /protein_id="NP_416491.2" /db_xref="GI:226524727" /db_xref="ASAP:ABE-0006586" /db_xref="UniProtKB/Swiss-Prot:P76352" /db_xref="EcoGene:EG13383" /db_xref="GeneID:946506" /translation="MWFHFLQLRSALNISSALRQVVHGTRWHAKRKSYKVLFWREITP LAVPIFMENACVLLMGVLSTFLVSWLGKDAMAGVGLADSFNMVIMAFFAAIDLGTTVV VAFSLGKRDRRRARVATRQSLVIMTLFAVLLATLIHHFGEQIIDFVAGDATTEVKALA LTYLELTVLSYPAAAITLIGSGALRGAGNTKIPLLINGSLNILNIIISGILIYGLFSW PGLGFVGAGLGLTISRYIGAVAILWVLAIGFNPALRISLKSYFKPLNFSIIWEVMGIG IPASVESVLFTSGRLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGSALGSASTIITG RRLGVGQIAQAEIQLRHVFWLSTLGLTAIAWLTAPFAGVMASFYTQDPQVKHVVVILI WLNALFMPIWSASWVLPAGFKGARDARYAMWVSMLSMWGCRVVVGYVLGIMLGWGVVG VWMGMFADWAVRAVLFYWRMVTGRWLWKYPRPEPQKCEKKPVVSE" gene 2059851..2059926 /gene="asnU" /locus_tag="b1986" /gene_synonym="ECK1981; JWR0040" /db_xref="EcoGene:EG30021" /db_xref="GeneID:946503" tRNA 2059851..2059926 /gene="asnU" /locus_tag="b1986" /gene_synonym="ECK1981; JWR0040" /product="tRNA-Asn" /note="anticodon: GUU" /db_xref="ASAP:ABE-0006588" /db_xref="EcoGene:EG30021" /db_xref="GeneID:946503" gene complement(2059964..2060914) /gene="cbl" /locus_tag="b1987" /gene_synonym="ECK1982; JW1966" /db_xref="EcoGene:EG14264" /db_xref="GeneID:946502" CDS complement(2059964..2060914) /gene="cbl" /locus_tag="b1987" /gene_synonym="ECK1982; JW1966" /function="regulator; Amino acid biosynthesis: Cysteine" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0019344 - cysteine biosynthetic process; GO:0006790 - sulfur metabolic process; GO:0006350 - transcription" /note="transcriptional regulator cys regulon; accessory regulatory circuit affecting cysM" /codon_start=1 /transl_table=11 /product="ssuEADCB/tauABCD operon transcriptional activator" /protein_id="NP_416492.1" /db_xref="GI:16129929" /db_xref="ASAP:ABE-0006590" /db_xref="UniProtKB/Swiss-Prot:Q47083" /db_xref="EcoGene:EG14264" /db_xref="GeneID:946502" /translation="MNFQQLKIIREAARQDYNLTEVANMLFTSQSGVSRHIRELEDEL GIEIFVRRGKRLLGMTEPGKALLVIAERILNEASNVRRLADLFTNDTSGVLTIATTHT QARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVA FPWFRWHHSLLVPHDHPLTQISPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLA DIVLSAQDSDVIKTYVALGLGIGLVAEQSSGEQEEENLIRLDTRHLFDANTVWLGLKR GQLQRNYVWRFLELCNAGLSVEDIKRQVMESSEEEIDYQI" gene complement(2061016..2061933) /gene="nac" /locus_tag="b1988" /gene_synonym="ECK1983; JW1967" /db_xref="EcoGene:EG14265" /db_xref="GeneID:946501" CDS complement(2061016..2061933) /gene="nac" /locus_tag="b1988" /gene_synonym="ECK1983; JW1967" /function="regulator; Central intermediary metabolism" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006807 - nitrogen compound metabolic process; GO:0006350 - transcription" /note="nitrogen assimilation control protein" /codon_start=1 /transl_table=11 /product="nitrogen assimilation regulon transcriptional regulator; autorepressor" /protein_id="NP_416493.1" /db_xref="GI:16129930" /db_xref="ASAP:ABE-0006594" /db_xref="UniProtKB/Swiss-Prot:Q47005" /db_xref="EcoGene:EG14265" /db_xref="GeneID:946501" /translation="MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELN QQLLIRTKRGVTPTDAGKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPGTA ASSITMPLLQAVRAEFPEIVIYLHENSGAVLNEKLINHQLDMAVIYEHSPVAGVSSQA LLKEDLFLVGTQDCPGQSVDVNAIAQMNLFLPSDYSAIRLRVDEAFSLRRLTAKVIGE IESIATLTAAIASGMGVAVLPESAARSLCGAVNGWMSRITTPSMSLSLSLNLPARANL SPQAQAVKELLMSVISSPVMEKRQWQLVS" gene 2062260..2062335 /gene="asnV" /locus_tag="b1989" /gene_synonym="ECK1984; JWR0041" /db_xref="EcoGene:EG30022" /db_xref="GeneID:946509" tRNA 2062260..2062335 /gene="asnV" /locus_tag="b1989" /gene_synonym="ECK1984; JWR0041" /product="tRNA-Asn" /note="anticodon: GUU" /db_xref="ASAP:ABE-0006605" /db_xref="EcoGene:EG30022" /db_xref="GeneID:946509" gene complement(2062391..2063323) /gene="ldtA" /locus_tag="b1990" /gene_synonym="ECK1985; erfK; JW1968; srfK; yeeG; yzzT" /db_xref="EcoGene:EG12682" /db_xref="GeneID:945273" CDS complement(2062391..2063323) /gene="ldtA" /locus_tag="b1990" /gene_synonym="ECK1985; erfK; JW1968; srfK; yeeG; yzzT" /function="enzyme; Murein sacculus, peptidoglycan" /codon_start=1 /transl_table=11 /product="L,D-transpeptidase linking Lpp to murein" /protein_id="NP_416494.1" /db_xref="GI:16129931" /db_xref="ASAP:ABE-0006607" /db_xref="UniProtKB/Swiss-Prot:P39176" /db_xref="EcoGene:EG12682" /db_xref="GeneID:945273" /translation="MRRVNILCSFALLFASHTSLAVTYPLPPEGSRLVGQSFTVTVPD HNTQPLETFAAQYGQGLSNMLEANPGADVFLPKSGSQLTIPQQLILPDTVRKGIVVNV AEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRREYAK RGESLPAFVPAGPDNPMGLYAIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKYL FDNVPVGTRVQIIDQPVKYTTEPDGSNWLEVHEPLSRNRAEYESDRKVPLPVTPSLRA FINGQEVDVNRANAALQRRSGMPVQISSGSRQMF" gene complement(2063388..2064467) /gene="cobT" /locus_tag="b1991" /gene_synonym="ECK1986; JW1969" /db_xref="EcoGene:EG12151" /db_xref="GeneID:946517" CDS complement(2063388..2064467) /gene="cobT" /locus_tag="b1991" /gene_synonym="ECK1986; JW1969" /EC_number="2.4.2.21" /function="enzyme; Biosynthesis of cofactors, carriers: Cobalamin" /codon_start=1 /transl_table=11 /product="nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase" /protein_id="NP_416495.1" /db_xref="GI:16129932" /db_xref="ASAP:ABE-0006611" /db_xref="UniProtKB/Swiss-Prot:P36562" /db_xref="EcoGene:EG12151" /db_xref="GeneID:946517" /translation="MQILADLLNTIPAIDSTAMSRAQRHIDGLLKPVGSLGKLEVLAI QLAGMPGLNGIPHVGKKAVLVMCADHGVWEEGVAISPKEVTAIQAENMTRGTTGVCVL AEQAGANVHVIDVGIDTAEPIPGLINMRVARGSGNIASAPAMSRRQAEKLLLDVICYT QELAKNGVTLFGVGELGMANTTPAAAIVSTITGRDPEEVVGIGANLPTDKLANKIDVV RRAITLNQPNPQDGVDVLAKVGGFDLVGIAGVMLGAASCGLPVLLDGFLSYAAALAAC QMSPAIKPYLIPSHLSAEKGARIALSHLGLEPYLNMEMRLGEGSGAALAMPIIEAACA IYNNMGELAASNIVLPGNTTSDLNS" gene complement(2064479..2065222) /gene="cobS" /locus_tag="b1992" /gene_synonym="ECK1987; JW1970" /db_xref="EcoGene:EG12150" /db_xref="GeneID:946520" CDS complement(2064479..2065222) /gene="cobS" /locus_tag="b1992" /gene_synonym="ECK1987; JW1970" /EC_number="2.-.-.-" /function="enzyme; Biosynthesis of cofactors, carriers: Cobalamin" /codon_start=1 /transl_table=11 /product="cobalamin synthase" /protein_id="NP_416496.1" /db_xref="GI:16129933" /db_xref="ASAP:ABE-0006613" /db_xref="UniProtKB/Swiss-Prot:P36561" /db_xref="EcoGene:EG12150" /db_xref="GeneID:946520" /translation="MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLL GAISGLVFMVLQAWCGAPLAALFSVLVLVLMTGGFHLDGLADTCDGVFSARSRDRMLE IMRDSRLGTHGGLALIFVVLAKILVLSELALRGESILASLAAACAVSRGTAALLMYRH RYAREEGLGNVFIGKIDGRQTCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQL LKRTLGGQTGDTLGAAIELGELVFLLALL" gene complement(2065219..2065764) /gene="cobU" /locus_tag="b1993" /gene_synonym="ECK1988; JW1971" /db_xref="EcoGene:EG13238" /db_xref="GeneID:946519" CDS complement(2065219..2065764) /gene="cobU" /locus_tag="b1993" /gene_synonym="ECK1988; JW1971" /function="enzyme; Biosynthesis of cofactors, carriers: Cobalamin" /note="cobinamide kinase/cobinamide phosphate guanylyltransferase" /codon_start=1 /transl_table=11 /product="cobinamide kinase and cobinamide phosphate guanylyltransferase" /protein_id="NP_416497.1" /db_xref="GI:16129934" /db_xref="ASAP:ABE-0006616" /db_xref="UniProtKB/Swiss-Prot:P0AE76" /db_xref="EcoGene:EG13238" /db_xref="GeneID:946519" /translation="MMILVTGGARSGKSRHAEALIGDSSQVLYIATSQILDDEMAARI EHHRQGRPEHWRTVERWQHLDELIHADINPNEVVLLECVTTMVTNLLFDYGGDKDPDE WDYQAMEQAINAEIQSLIAACQRCPAKVVLVTNEVGMGIVPESRLARHFRDIAGRVNQ QLAAAANEVWLVVSGIGVKIK" gene complement(2066068..2066154) /gene="yeeH" /locus_tag="b4639" /gene_synonym="ECK4437" /pseudo /db_xref="EcoGene:EG13239" /db_xref="GeneID:5625565" CDS complement(2066068..2066154) /gene="yeeH" /locus_tag="b4639" /gene_synonym="ECK4437" /note="pseudogene" /pseudo /codon_start=1 /transl_table=11 /db_xref="EcoGene:EG13239" /db_xref="GeneID:5625565" mobile_element complement(2066159..2067353) /mobile_element_type="insertion sequence:IS5H" gene complement(2066305..2067321) /gene="insH1" /locus_tag="b1994" /gene_synonym="ECK0261" /db_xref="EcoGene:EG40008" /db_xref="GeneID:946507" CDS complement(2066305..2067321) /gene="insH1" /locus_tag="b1994" /gene_synonym="ECK0261" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS5 transposase and trans-activator" /protein_id="NP_416498.1" /db_xref="GI:16129935" /db_xref="ASAP:ABE-0006619" /db_xref="UniProtKB/Swiss-Prot:P0CE53" /db_xref="EcoGene:EG40008" /db_xref="GeneID:946507" /translation="MFVIWSHGTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQIL PWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLF ARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIE APSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQL GNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINI EYMKASIRAKVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRADQMIRQW ERSH" misc_feature 2067354..2079031 /note="cryptic prophage CP4-44" gene complement(2067360..2067892) /gene="yoeG" /locus_tag="b4640" /gene_synonym="ECK4451" /pseudo /db_xref="EcoGene:EG14440" /db_xref="GeneID:5625566" CDS complement(join(2067360..2067458,2067458..2067892)) /gene="yoeG" /locus_tag="b4640" /gene_synonym="ECK4451" /note="pseudogene, CP4-44 putative prophage remnant;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="EcoGene:EG14440" /db_xref="GeneID:5625566" gene complement(2068261..2068419) /gene="yoeH" /locus_tag="b4641" /gene_synonym="ECK4452" /pseudo /db_xref="EcoGene:EG14441" /db_xref="GeneID:5625567" CDS complement(2068261..2068419) /gene="yoeH" /locus_tag="b4641" /gene_synonym="ECK4452" /note="pseudogene, CP4-44 putative prophage remnant;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="EcoGene:EG14441" /db_xref="GeneID:5625567" gene join(2068635..2068940,2070277..2070474) /gene="yoeA" /locus_tag="b4582" /gene_synonym="ECK1989; JW5326; yoeE" /pseudo /db_xref="EcoGene:EG14308" /db_xref="GeneID:4056042" CDS join(2068635..2068940,2070277..2070474) /gene="yoeA" /locus_tag="b4582" /gene_synonym="ECK1989; JW5326; yoeE" /note="CP4-44 prophage; putative disrupted hemin or colicin receptor;Phage or Prophage Related; interrupted by IS2 and C-terminal deletion" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0006626" /db_xref="ASAP:ABE-0006636" /db_xref="ASAP:ABE-0285114" /db_xref="UniProtKB/Swiss-Prot:P76356" /db_xref="EcoGene:EG14308" /db_xref="GeneID:4056042" mobile_element complement(2068941..2070271) /mobile_element_type="insertion sequence:IS2F" gene complement(2068952..2069857) /gene="insD1" /locus_tag="b1996" /gene_synonym="ECK0358" /db_xref="EcoGene:EG40004" /db_xref="GeneID:946403" CDS complement(2068952..2069857) /gene="insD1" /locus_tag="b1996" /gene_synonym="ECK0358" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_416500.1" /db_xref="GI:16129937" /db_xref="ASAP:ABE-0006629" /db_xref="UniProtKB/Swiss-Prot:P0CF55" /db_xref="EcoGene:EG40004" /db_xref="GeneID:946403" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" gene complement(2069815..2070180) /gene="insC1" /locus_tag="b1997" /gene_synonym="ECK0357" /db_xref="EcoGene:EG40003" /db_xref="GeneID:946455" CDS complement(2069815..2070180) /gene="insC1" /locus_tag="b1997" /gene_synonym="ECK0357" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="YP_026163.2" /db_xref="GI:145698282" /db_xref="ASAP:ABE-0006631" /db_xref="UniProtKB/Swiss-Prot:P0CF42" /db_xref="EcoGene:EG40003" /db_xref="GeneID:946455" /translation="MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAAS QLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVE YGRAKKWIAHAPLLPGDGE" gene 2070660..2071211 /gene="yeeP" /locus_tag="b1999" /gene_synonym="ECK1991; JW5327" /pseudo /db_xref="EcoGene:EG13384" /db_xref="GeneID:946524" CDS 2070660..2071211 /gene="yeeP" /locus_tag="b1999" /gene_synonym="ECK1991; JW5327" /note="pseudogene, CP4-44 prophage; 50S ribosome-binding GTPase family;Phage or Prophage Related; putative histone" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0006639" /db_xref="UniProtKB/Swiss-Prot:P76359" /db_xref="EcoGene:EG13384" /db_xref="GeneID:946524" gene 2071317..2071511 /gene="isrC" /locus_tag="b4435" /gene_synonym="ECK1992; IS102; JWR0240" /db_xref="EcoGene:EG31150" /db_xref="GeneID:2847691" ncRNA 2071317..2071511 /ncRNA_class="other" /gene="isrC" /locus_tag="b4435" /gene_synonym="ECK1992; IS102; JWR0240" /product="novel sRNA, CP4-44; putative prophage remnant" /note="identified in a large scale screen" /db_xref="ASAP:ABE-0047255" /db_xref="EcoGene:EG31150" /db_xref="GeneID:2847691" gene 2071539..2074658 /gene="flu" /locus_tag="b2000" /gene_synonym="agn; agn43; ECK1993; JW1982; yeeQ; yzzX" /db_xref="EcoGene:EG12686" /db_xref="GeneID:946540" CDS 2071539..2074658 /gene="flu" /locus_tag="b2000" /gene_synonym="agn; agn43; ECK1993; JW1982; yeeQ; yzzX" /function="membrane; Outer membrane constituents; Phage or Prophage Related" /note="antigen 43, phase-variable bipartite outer membrane fluffing protein" /codon_start=1 /transl_table=11 /product="CP4-44 prophage; antigen 43 (Ag43) phase-variable biofilm formation autotransporter" /protein_id="YP_026164.1" /db_xref="GI:49176177" /db_xref="ASAP:ABE-0006642" /db_xref="UniProtKB/Swiss-Prot:P39180" /db_xref="EcoGene:EG12686" /db_xref="GeneID:946540" /translation="MKRHLNTCYRLVWNHMTGAFVVASELARARGKRGGVAVALSLAA VTSLPVLAADIVVHPGETVNGGTLANHDNQIVFGTTNGMTISTGLEYGPDNEANTGGQ WVQDGGTANKTTVTSGGLQRVNPGGSVSDTVISAGGGQSLQGRAVNTTLNGGEQWMHE GAIATGTVINDKGWQVVKPGTVATDTVVNTGAEGGPDAENGDTGQFVRGDAVRTTINK NGRQIVRAEGTANTTVVYAGGDQTVHGHALDTTLNGGYQYVHNGGTASDTVVNSDGWQ IVKNGGVAGNTTVNQKGRLQVDAGGTATNVTLKQGGALVTSTAATVTGINRLGAFSVV EGKADNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVLLADSG AAVSGTRSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGTLAG TTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGSLTGNGSVEKSGSGTLTVSNTTLT QKAVNLNEGTLTLNDSTVTTDVIAQRGTALKLTGSTVLNGAIDPTNVTLASGATWNIP DNATVQSVVDDLSHAGQIHFTSTRTGKFVPATLKVKNLNGQNGTISLRVRPDMAQNNA DRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEEGAFVQGNRLQ AGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQAMDYDRIVAGSRSHQTGVNGE NNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLMRTEVAGMSVTAGVYG AAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLVHTSSGLWADIVAQGTRHSMKASSD NNDFRARGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGKDNAGYVKFGHGS AQHVRAGFRLGSHNDMTFGEGTSSRAPLRDSAKHSVSELPVNWWVQPSVIRTFSSRGD MRVGTSTAGSGMTFSPSQNGTSLDLQAGLEARVRENITLGVQAGYAHSVSGSSAEGYN GQATLNVTF" gene 2074779..2076311 /gene="yeeR" /locus_tag="b2001" /gene_synonym="ECK1994; JW1983" /db_xref="EcoGene:EG13385" /db_xref="GeneID:946512" CDS 2074779..2076311 /gene="yeeR" /locus_tag="b2001" /gene_synonym="ECK1994; JW1983" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-44 prophage; putative membrane protein" /protein_id="NP_416505.2" /db_xref="GI:90111368" /db_xref="ASAP:ABE-0006648" /db_xref="UniProtKB/Swiss-Prot:P76361" /db_xref="EcoGene:EG13385" /db_xref="GeneID:946512" /translation="MLQIVGALILLIAGFAILRLLFRALISTASALAGLILLCLFGPA LLAGYITERITRLFHIRWLAGVFLTIAGMIISFMWGLDGKHIALEAHTFDSVKFILTT ALAGGLLAVPLQIKNIQQNGITPEDISKEINGYYCCFYTAFFLMACSACAPLIALQYD ISPSLMWWGGLLYWLAALVTLLWAASQIQALKKLTCAISQTLEEQPVLNSKSWLTSLQ NDYSLPDSLTERIWLTLISQRISRGELREFELADGNWLLNNAWYERNMAGFNEQLKEN LSFTPDELKTLFRNRLNLSPEANDDFLDRCLDGGDWYPFSEGRRFVSFHHVDELRICA SCGLTEVHHAPENHKPDPEWYCSSLCRETETLCQEIYERPYNSFISDATANGLILMKL PETWSTNEKMFASGGQGHGFAAERGNHIVDRVRLKNARILGDNNARNGADRLVSGTEI QTKYCSTAARSVGAAFDGQNGQYRYMGNNGPMQLEVPRDQYAGAVETMRNKIREGKVE ER" gene 2076308..2076754 /gene="yeeS" /locus_tag="b2002" /gene_synonym="ECK1995; JW1984" /db_xref="EcoGene:EG13386" /db_xref="GeneID:946514" CDS 2076308..2076754 /gene="yeeS" /locus_tag="b2002" /gene_synonym="ECK1995; JW1984" /function="Phage or Prophage Related" /note="putative DNA repair protein, RADC family" /codon_start=1 /transl_table=11 /product="CP4-44 prophage; putative DNA repair protein" /protein_id="NP_416506.1" /db_xref="GI:16129943" /db_xref="ASAP:ABE-0006650" /db_xref="UniProtKB/Swiss-Prot:P76362" /db_xref="EcoGene:EG13386" /db_xref="GeneID:946514" /translation="MTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGL EREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAAVVLAHNHPSG EVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL" gene 2076817..2077038 /gene="yeeT" /locus_tag="b2003" /gene_synonym="ECK1996; JW1985" /db_xref="EcoGene:EG13387" /db_xref="GeneID:946513" CDS 2076817..2077038 /gene="yeeT" /locus_tag="b2003" /gene_synonym="ECK1996; JW1985" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-44 prophage; uncharacterized protein" /protein_id="NP_416507.1" /db_xref="GI:16129944" /db_xref="ASAP:ABE-0006653" /db_xref="UniProtKB/Swiss-Prot:P64521" /db_xref="EcoGene:EG13387" /db_xref="GeneID:946513" /translation="MKIITRGEAMRIHQQHPTSRLFPFCTGKYRWHGSAEAYTGREVQ DIPGVLAVFAERRKDSFGPYVRLMSVTLN" gene 2077112..2077480 /gene="cbeA" /locus_tag="b2004" /gene_synonym="ECK1997; JW1986; yeeU" /db_xref="EcoGene:EG13388" /db_xref="GeneID:946510" CDS 2077112..2077480 /gene="cbeA" /locus_tag="b2004" /gene_synonym="ECK1997; JW1986; yeeU" /function="Phage or Prophage Related" /note="putative structural protein" /codon_start=1 /transl_table=11 /product="CP4-44 prophage; cytoskeleton bundling-enhancing factor A; CbtA antitoxin" /protein_id="NP_416508.1" /db_xref="GI:16129945" /db_xref="ASAP:ABE-0006656" /db_xref="UniProtKB/Swiss-Prot:P76364" /db_xref="EcoGene:EG13388" /db_xref="GeneID:946510" /translation="MSDTLPGTTLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYL ADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCKAD TLSSCDYVYLAVYPTPEMKN" gene 2077569..2077943 /gene="cbtA" /locus_tag="b2005" /gene_synonym="ECK1998; JW1987; yeeV" /db_xref="EcoGene:EG13389" /db_xref="GeneID:946534" CDS 2077569..2077943 /gene="cbtA" /locus_tag="b2005" /gene_synonym="ECK1998; JW1987; yeeV" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-44 prophage; toxin of the YeeV-YeeU toxin-antitoxin system" /protein_id="NP_416509.1" /db_xref="GI:16129946" /db_xref="ASAP:ABE-0006659" /db_xref="UniProtKB/Swiss-Prot:P64524" /db_xref="EcoGene:EG13389" /db_xref="GeneID:946534" /translation="MKTLPVLPGQAASSRPSPVEIWQILLSRLLDQHYGLTLNDTPFA DERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGFSACTRSQLINSIDILRARRATG LMTRDNYRTVNNITLGKYPEAK" gene 2077940..2078107 /gene="yeeW" /locus_tag="b2006" /gene_synonym="ECK1999; JW1988" /pseudo /db_xref="EcoGene:EG13390" /db_xref="GeneID:946535" CDS 2077940..2078107 /gene="yeeW" /locus_tag="b2006" /gene_synonym="ECK1999; JW1988" /note="CP4-44 prophage; uncharacterized protein;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0006661" /db_xref="UniProtKB/Swiss-Prot:P64526" /db_xref="EcoGene:EG13390" /db_xref="GeneID:946535" gene complement(2078549..2078677) /gene="yoeD" /locus_tag="b4642" /gene_synonym="ECK4443" /pseudo /db_xref="EcoGene:EG14362" /db_xref="GeneID:5625568" CDS complement(2078549..2078677) /gene="yoeD" /locus_tag="b4642" /gene_synonym="ECK4443" /note="pseudogene, CP4-44 putative prophage remnant;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="EcoGene:EG14362" /db_xref="GeneID:5625568" gene 2078746..2078931 /gene="yoeF" /locus_tag="b4538" /gene_synonym="ECK2000; JW5328" /pseudo /db_xref="EcoGene:EG14425" /db_xref="GeneID:1450273" CDS 2078746..2078931 /gene="yoeF" /locus_tag="b4538" /gene_synonym="ECK2000; JW5328" /note="pseudogene, CP4-44 putative prophage remnant;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0285059" /db_xref="UniProtKB/Swiss-Prot:Q2EES3" /db_xref="EcoGene:EG14425" /db_xref="GeneID:1450273" gene complement(2079032..2079361) /gene="yeeX" /locus_tag="b2007" /gene_synonym="ECK2001; JW1989" /db_xref="EcoGene:EG13391" /db_xref="GeneID:946541" CDS complement(2079032..2079361) /gene="yeeX" /locus_tag="b2007" /gene_synonym="ECK2001; JW1989" /function="phenotype; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 9868784" /note="putative alpha helix protein" /codon_start=1 /transl_table=11 /product="UPF0265 family protein" /protein_id="NP_416511.4" /db_xref="GI:145698283" /db_xref="ASAP:ABE-0006663" /db_xref="UniProtKB/Swiss-Prot:P0A8M6" /db_xref="EcoGene:EG13391" /db_xref="GeneID:946541" /translation="METTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLL LDNLSDYIKPGMSVEAIQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGE MKNGEAK" gene complement(2079533..2080591) /gene="yeeA" /locus_tag="b2008" /gene_synonym="ECK2002; JW1990" /db_xref="EcoGene:EG11891" /db_xref="GeneID:946545" CDS complement(2079533..2080591) /gene="yeeA" /locus_tag="b2008" /gene_synonym="ECK2002; JW1990" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative transporter, FUSC family inner membrane protein" /protein_id="NP_416512.1" /db_xref="GI:16129949" /db_xref="ASAP:ABE-0006667" /db_xref="UniProtKB/Swiss-Prot:P33011" /db_xref="EcoGene:EG11891" /db_xref="GeneID:946545" /translation="MRADKSLSPFEIRVYRHYRIVHGTRVALAFLLTFLIIRLFTIPE STWPLVTMVVIMGPISFWGNVVPRAFERIGGTVLGSILGLIALQLELISLPLMLVWCA AAMFLCGWLALGKKPYQGLLIGVTLAIVVGSPTGEIDTALWRSGDVILGSLLAMLFTG IWPQRAFIHWRIQLAKSLTEYNRVYQSAFSPNLLERPRLESHLQKLLTDAVKMRGLIA PASKETRIPKSIYEGIQTINRNLVCMLELQINAYWATRPSHFVLLNAQKLRDTQHMMQ QILLSLVHALYEGNPQPVFANTEKLNDAVEELRQLLNNHHDLKVVETPIYGYVWLNME TAHQLELLSNLICRALRK" gene complement(2080789..2081262) /gene="sbmC" /locus_tag="b2009" /gene_synonym="dgi; ECK2003; gyrI; JW1991; yeeB" /db_xref="EcoGene:EG11892" /db_xref="GeneID:946546" CDS complement(2080789..2081262) /gene="sbmC" /locus_tag="b2009" /gene_synonym="dgi; ECK2003; gyrI; JW1991; yeeB" /experiment="N-terminus verified by Edman degradation: PMID 9442027" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006281 - DNA repair; GO:0006261 - DNA-dependent DNA replication; GO:0009432 - SOS response" /note="SbmC protein" /codon_start=1 /transl_table=11 /product="DNA gyrase inhibitor" /protein_id="NP_416513.1" /db_xref="GI:16129950" /db_xref="ASAP:ABE-0006670" /db_xref="UniProtKB/Swiss-Prot:P33012" /db_xref="EcoGene:EG11892" /db_xref="GeneID:946546" /translation="MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP KEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV GDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH" gene complement(2081381..2082547) /gene="dacD" /locus_tag="b2010" /gene_synonym="ECK2004; JW5329; phsE; phsF; yeeC" /db_xref="EcoGene:EG11893" /db_xref="GeneID:946518" CDS complement(2081381..2082547) /gene="dacD" /locus_tag="b2010" /gene_synonym="ECK2004; JW5329; phsE; phsF; yeeC" /EC_number="3.4.16.4" /function="putative enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /note="penicillin binding protein 6b" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6b" /protein_id="NP_416514.4" /db_xref="GI:162135904" /db_xref="ASAP:ABE-0006680" /db_xref="UniProtKB/Swiss-Prot:P33013" /db_xref="EcoGene:EG11893" /db_xref="GeneID:946518" /translation="MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDY TTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVF VGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLH LKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQNRN GLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLR WGQQNFTTVQILHRGKKVGTERIWYGDKENIDLGTEQEFWMVLPKAEIPHIKAKYTLD GKELTAPISAHQRVGEIELYDRDKQVAHWPLVTLESVGEGSMFSRLSDYFHHKA" gene 2082756..2084183 /gene="sbcB" /locus_tag="b2011" /gene_synonym="cpeA; ECK2005; JW1993; xonA" /db_xref="EcoGene:EG10926" /db_xref="GeneID:946529" CDS 2082756..2084183 /gene="sbcB" /locus_tag="b2011" /gene_synonym="cpeA; ECK2005; JW1993; xonA" /EC_number="3.1.11.1" /function="enzyme; Degradation of DNA" /experiment="N-terminus verified by Edman degradation: PMID 3539937" /GO_process="GO:0006308 - DNA catabolic process" /note="exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease I; exonuclease I" /protein_id="NP_416515.1" /db_xref="GI:16129952" /db_xref="ASAP:ABE-0006686" /db_xref="UniProtKB/Swiss-Prot:P04995" /db_xref="EcoGene:EG10926" /db_xref="GeneID:946529" /translation="MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIG EPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGY NNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLM ALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDS DTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNL KILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLP ALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQML VQQYADDKEKVALLKALWQYAEEIV" gene complement(2084226..2084453) /gene="yeeD" /locus_tag="b2012" /gene_synonym="ECK2006; JW1994" /db_xref="EcoGene:EG11894" /db_xref="GeneID:946539" CDS complement(2084226..2084453) /gene="yeeD" /locus_tag="b2012" /gene_synonym="ECK2006; JW1994" /codon_start=1 /transl_table=11 /product="putative TusA family sulfurtransferase" /protein_id="NP_416516.1" /db_xref="GI:16129953" /db_xref="ASAP:ABE-0006688" /db_xref="UniProtKB/Swiss-Prot:P33014" /db_xref="EcoGene:EG11894" /db_xref="GeneID:946539" /translation="MVIKKLDVVTQVCPFPLIEAKAALAEMVSGDELVIEFDCTQATE AIPQWAAEEGHAITDYQQIGDAAWSITVQKA" gene complement(2084467..2085525) /gene="yeeE" /locus_tag="b2013" /gene_synonym="ECK2007; JW1995" /db_xref="EcoGene:EG11895" /db_xref="GeneID:946526" CDS complement(2084467..2085525) /gene="yeeE" /locus_tag="b2013" /gene_synonym="ECK2007; JW1995" /function="putative transport; Not classified" /note="putative transport system permease protein" /codon_start=1 /transl_table=11 /product="UPF0394 family inner membrane protein" /protein_id="NP_416517.1" /db_xref="GI:16129954" /db_xref="ASAP:ABE-0006691" /db_xref="UniProtKB/Swiss-Prot:P33015" /db_xref="EcoGene:EG11895" /db_xref="GeneID:946526" /translation="MFSMILSGLICGALLGFVMQRGRFCLTGGFRDMYIVKNNRMFYA LLIAISVQSVGVFALIQAGLLTYEAGAFPWLGTVIGGYIFGLGIVLAGGCATGTWYRA GEGLIGSWIALFTYMVMSAVMRSPHASGLNQTLQHYSTEHNSIAETFNLSVWPLVAVL LVITLWVVMKELKKPKLKVATLPPRRTGIAHILFEKRWHPFVTAVLIGLIALLAWPLS EATGRMFGLGITSPTANILQFLVAGDMKYINWGVFLVLGIFVGSFIAAKASREFRVRA ADAQTTLRSGLGGVLMGFGASIAGGCSIGNGLVMTAMMTWQGWIGLVFMILGVWTASW LVYVRPQRKARLATAAAN" gene complement(2085704..2087062) /gene="plaP" /locus_tag="b2014" /gene_synonym="ECK2008; JW5330; yeeF" /db_xref="EcoGene:EG11896" /db_xref="GeneID:946533" CDS complement(2085704..2087062) /gene="plaP" /locus_tag="b2014" /gene_synonym="ECK2008; JW5330; yeeF" /function="transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative amino acid/amine transport protein" /codon_start=1 /transl_table=11 /product="putrescine importer, low affinity" /protein_id="NP_416518.2" /db_xref="GI:90111370" /db_xref="ASAP:ABE-0006696" /db_xref="UniProtKB/Swiss-Prot:P0AA47" /db_xref="EcoGene:EG11896" /db_xref="GeneID:946533" /translation="MSHNVTPNTSRVELRKTLTLVPVVMMGLAYMQPMTLFDTFGIVS GLTDGHVPTAYAFALIAILFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGWSS LLDYLFAPMINILLAKIYFEALVPSIPSWMFVVALVAFMTAFNLRSLKSVANFNTVIV VLQVVLIAVILGMVVYGVFEGEGAGTLASTRPFWSGDAHVIPMITGATILCFSFTGFD GISNLSEETKDAERVIPRAIFLTALIGGMIFIFATYFLQLYFPDISRFKDPDASQPEI MLYVAGKAFQVGALIFSTITVLASGMAAHAGVARLMYVMGRDGVFPKSFFGYVHPKWR TPAMNIILVGAIALLAINFDLVMATALINFGALVAFTFVNLSVISQFWIREKRNKTLK DHFQYLFLPMCGALTVGALWVNLEESSMVLGLIWAAIGLIYLACVTKSFRNPVPQYED VA" gene complement(2087052..2087114) /gene="yoeI" /locus_tag="b4678" /gene_synonym="ECK4493" /db_xref="EcoGene:EG14483" /db_xref="GeneID:7751643" CDS complement(2087052..2087114) /gene="yoeI" /locus_tag="b4678" /gene_synonym="ECK4493" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_002791246.1" /db_xref="GI:226524728" /db_xref="UniProtKB/Swiss-Prot:C1P606" /db_xref="EcoGene:EG14483" /db_xref="GeneID:7751643" /translation="MGQFFAYATVITVKENDHVA" gene complement(2087329..2088258) /gene="yeeY" /locus_tag="b2015" /gene_synonym="ECK2009; JW5834" /db_xref="EcoGene:EG13392" /db_xref="GeneID:946532" CDS complement(2087329..2088258) /gene="yeeY" /locus_tag="b2015" /gene_synonym="ECK2009; JW5834" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="LysR family putative transcriptional regulator" /protein_id="NP_416519.4" /db_xref="GI:90111371" /db_xref="ASAP:ABE-0006700" /db_xref="UniProtKB/Swiss-Prot:P76369" /db_xref="EcoGene:EG13392" /db_xref="GeneID:946532" /translation="MKPLLDVLMILDALEKEGSFAAASAKLYKTPSALSYTVHKLESD LNIQLLDRSGHRAKFTRTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDT FPFSLLAPLIEAFYQHHSVTRLKFINGVLGGSWDALTQGRADIIVGAMHEPPSSSEFG FSRLGDLEQVFAVAPHHPLALEEEPLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQE AITVFDFKTKLELQISGLGCGYLPRYLAQRFLDSGALIEKKVVAQTLFEPVWIGWNEQ TAGLASGWWRDEILANSAIAGVYAKSDDGKSAI" gene complement(2088304..2089128) /gene="yeeZ" /locus_tag="b2016" /gene_synonym="ECK2010; JW1998" /db_xref="EcoGene:EG13393" /db_xref="GeneID:946538" CDS complement(2088304..2089128) /gene="yeeZ" /locus_tag="b2016" /gene_synonym="ECK2010; JW1998" /function="putative enzyme; Not classified" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="putative enzyme of sugar metabolism" /codon_start=1 /transl_table=11 /product="putative epimerase" /protein_id="NP_416520.1" /db_xref="GI:16129957" /db_xref="ASAP:ABE-0006702" /db_xref="UniProtKB/Swiss-Prot:P0AD12" /db_xref="EcoGene:EG13393" /db_xref="GeneID:946538" /translation="MKKVAIVGLGWLGMPLAMSLSARGWQVTGSKTTQDGVEAARMSG IDSYLLRMEPELVCDSDDLDALMDADALVITLPARRSGPGDEFYLQAVQELVDSALAH RIPRIIFTSSTSVYGDAQGTVKETTPRNPVTNSGRVLEELEDWLHNLPGTSVDILRLA GLVGPGRHPGRFFAGKTAPDGEHGVNLVHLEDVIGAITLLLQAPKGGHIYNICAPAHP ARNVFYPQMARLLGLEPPQFRNSLDSGKGKIIDGSRICNELGFEYQYPDPLVMPLE" gene complement(2089211..2089465) /gene="yoeB" /locus_tag="b4539" /gene_synonym="ECK2011; JW5331" /db_xref="EcoGene:EG14356" /db_xref="GeneID:1450274" CDS complement(2089211..2089465) /gene="yoeB" /locus_tag="b4539" /gene_synonym="ECK2011; JW5331" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="toxin of the YoeB-YefM toxin-antitoxin system" /protein_id="YP_588458.1" /db_xref="GI:94541116" /db_xref="ASAP:ABE-0285060" /db_xref="UniProtKB/Swiss-Prot:P69348" /db_xref="EcoGene:EG14356" /db_xref="GeneID:1450274" /translation="MKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGK PEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAACRYHY" gene complement(2089462..2089713) /gene="yefM" /locus_tag="b2017" /gene_synonym="ECK2012; JW5835" /db_xref="EcoGene:EG12844" /db_xref="GeneID:946542" CDS complement(2089462..2089713) /gene="yefM" /locus_tag="b2017" /gene_synonym="ECK2012; JW5835" /codon_start=1 /transl_table=11 /product="antitoxin of the YoeB-YefM toxin-antitoxin system" /protein_id="NP_416521.2" /db_xref="GI:90111372" /db_xref="ASAP:ABE-0006705" /db_xref="UniProtKB/Swiss-Prot:P69346" /db_xref="EcoGene:EG12844" /db_xref="GeneID:946542" /translation="MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEE YNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKDIIE" gene 2089996..2090046 /gene="hisL" /locus_tag="b2018" /gene_synonym="ECK2013; JW2000" /db_xref="EcoGene:EG11269" /db_xref="GeneID:946547" CDS 2089996..2090046 /gene="hisL" /locus_tag="b2018" /gene_synonym="ECK2013; JW2000" /function="leader; Amino acid biosynthesis: Histidine" /GO_process="GO:0000105 - histidine biosynthetic process" /codon_start=1 /transl_table=11 /product="his operon leader peptide" /protein_id="NP_416522.1" /db_xref="GI:16129959" /db_xref="ASAP:ABE-0006710" /db_xref="UniProtKB/Swiss-Prot:P60995" /db_xref="EcoGene:EG11269" /db_xref="GeneID:946547" /translation="MTRVQFKHHHHHHHPD" gene 2090192..2091091 /gene="hisG" /locus_tag="b2019" /gene_synonym="ECK2014; JW2001" /db_xref="EcoGene:EG10449" /db_xref="GeneID:946549" CDS 2090192..2091091 /gene="hisG" /locus_tag="b2019" /gene_synonym="ECK2014; JW2001" /EC_number="2.4.2.17" /function="enzyme; Amino acid biosynthesis: Histidine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0000105 - histidine biosynthetic process" /codon_start=1 /transl_table=11 /product="ATP phosphoribosyltransferase" /protein_id="NP_416523.1" /db_xref="GI:16129960" /db_xref="ASAP:ABE-0006713" /db_xref="UniProtKB/Swiss-Prot:P60757" /db_xref="EcoGene:EG10449" /db_xref="GeneID:946549" /translation="MTDNTRLRIAMQKSGRLSDDSRELLARCGIKINLHTQRLIAMAE NMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFG GCRLSLATPVDEAWDGPLSLNGKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEVAPR AGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMEESKQQLIDKLLTRIQ GVIQARESKYIMMHAPTERLDEVIALLPGAERPTILPLAGDQQRVAMHMVSSETLFWE TMEKLKALGASSILVLPIEKMME" gene 2091097..2092401 /gene="hisD" /locus_tag="b2020" /gene_synonym="ECK2015; JW2002" /db_xref="EcoGene:EG10447" /db_xref="GeneID:946531" CDS 2091097..2092401 /gene="hisD" /locus_tag="b2020" /gene_synonym="ECK2015; JW2002" /EC_number="1.1.1.23" /function="enzyme; Amino acid biosynthesis: Histidine" /GO_process="GO:0000105 - histidine biosynthetic process" /note="L-histidinal:NAD+ oxidoreductase; L-histidinol:NAD+ oxidoreductase" /codon_start=1 /transl_table=11 /product="bifunctional histidinal dehydrogenase/ histidinol dehydrogenase" /protein_id="NP_416524.1" /db_xref="GI:16129961" /db_xref="ASAP:ABE-0006715" /db_xref="UniProtKB/Swiss-Prot:P06988" /db_xref="EcoGene:EG10447" /db_xref="GeneID:946531" /translation="MSFNTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVK ARGDEALREYSAKFDKTTVTALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQ KLPPVDVETQPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLC SPPPIADEILYAAQLCGVQDVFNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAK RQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPAAD MARRVAEAVERQLAELPRAETARQALNASRLIVTKDLAQCVEISNQYGPEHLIIQTRN ARELVDSITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTV QELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQA" gene 2092398..2093468 /gene="hisC" /locus_tag="b2021" /gene_synonym="ECK2016; JW2003" /db_xref="EcoGene:EG10446" /db_xref="GeneID:946551" CDS 2092398..2093468 /gene="hisC" /locus_tag="b2021" /gene_synonym="ECK2016; JW2003" /EC_number="2.6.1.9" /function="enzyme; Amino acid biosynthesis: Histidine" /GO_process="GO:0000105 - histidine biosynthetic process" /codon_start=1 /transl_table=11 /product="histidinol-phosphate aminotransferase" /protein_id="NP_416525.1" /db_xref="GI:16129962" /db_xref="ASAP:ABE-0006717" /db_xref="UniProtKB/Swiss-Prot:P06986" /db_xref="EcoGene:EG10446" /db_xref="GeneID:946551" /translation="MSTVTITDLARENVRNLTPYQSARRLGGNGDVWLNANEYPTAVE FQLTQQTLNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDA ILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTG QLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFAL AGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAER EYLIAALKEIPCVEQVFDSETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCL RITVGTREESQRVIDALRAEQV" gene 2093468..2094535 /gene="hisB" /locus_tag="b2022" /gene_synonym="ECK2017; JW2004" /db_xref="EcoGene:EG10445" /db_xref="GeneID:946552" CDS 2093468..2094535 /gene="hisB" /locus_tag="b2022" /gene_synonym="ECK2017; JW2004" /EC_number="3.1.3.15" /EC_number="4.2.1.19" /function="enzyme; Amino acid biosynthesis: Histidine" /GO_process="GO:0000105 - histidine biosynthetic process" /note="imidazoleglycerolphosphate dehydratase and histidinol-phosphate phosphatase" /codon_start=1 /transl_table=11 /product="histidinol-phosphatase and imidazoleglycerol-phosphate dehydratase" /protein_id="NP_416526.4" /db_xref="GI:90111373" /db_xref="ASAP:ABE-0006720" /db_xref="UniProtKB/Swiss-Prot:P06987" /db_xref="EcoGene:EG10445" /db_xref="GeneID:946552" /translation="MSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPELLKLQ KAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECD CRKPKVKLVERYLAEQAMDRANSYVIGDRATDIQLAENMGITGLRYDRETLNWPMIGE QLTRRDRYAHVVRNTKETQIDVQVWLDREGGSKINTGVGFFDHMLDQIATHGGFRMEI NVKGDLYIDDHHTVEDTGLALGEALKIALGDKRGICRFGFVLPMDECLARCALDISGR PHLEYKAEFTYQRVGDLSTEMIEHFFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFG RTLRQAIRVEGDTLPSSKGVL" gene 2094535..2095125 /gene="hisH" /locus_tag="b2023" /gene_synonym="ECK2018; JW2005" /db_xref="EcoGene:EG10450" /db_xref="GeneID:946544" CDS 2094535..2095125 /gene="hisH" /locus_tag="b2023" /gene_synonym="ECK2018; JW2005" /EC_number="2.4.2.-" /function="enzyme; Amino acid biosynthesis: Histidine" /experiment="N-terminus verified by Edman degradation: PMID 17366475" /GO_process="GO:0000105 - histidine biosynthetic process" /note="glutamine amidotransferase subunit of heterodimer with HisF = imidazole glycerol phosphate synthase holoenzyme" /codon_start=1 /transl_table=11 /product="imidazole glycerol phosphate synthase, glutamine amidotransferase subunit" /protein_id="NP_416527.1" /db_xref="GI:16129964" /db_xref="ASAP:ABE-0006722" /db_xref="UniProtKB/Swiss-Prot:P60595" /db_xref="EcoGene:EG10450" /db_xref="GeneID:946544" /translation="MNVVILDTGCANLNSVKSAIARHGYEPKVSRDPDVVLLADKLFL PGVGTAQAAMDQVRERELFDLIKACTQPVLGICLGMQLLGRRSEESNGVDLLGIIDED VPKMTDFGLPLPHMGWNRVYPQAGNRLFQGIEDGAYFYFVHSYAMPVNPWTIAQCNYG EPFTAAVQKDNFYGVQFHPERSGAAGAKLLKNFLEM" gene 2095125..2095862 /gene="hisA" /locus_tag="b2024" /gene_synonym="ECK2019; JW2006" /db_xref="EcoGene:EG10444" /db_xref="GeneID:946521" CDS 2095125..2095862 /gene="hisA" /locus_tag="b2024" /gene_synonym="ECK2019; JW2006" /EC_number="5.3.1.16" /function="enzyme; Amino acid biosynthesis: Histidine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0000105 - histidine biosynthetic process" /codon_start=1 /transl_table=11 /product="N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase" /protein_id="NP_416528.2" /db_xref="GI:90111374" /db_xref="ASAP:ABE-0006725" /db_xref="UniProtKB/Swiss-Prot:P10371" /db_xref="EcoGene:EG10444" /db_xref="GeneID:946521" /translation="MIIPALDLIDGTVVRLHQGDYGKQRDYGNDPLPRLQDYAAQGAE VLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRSEEDVAALLEAGVARVVVG STAVKSQDMVKGWFERFGADALVLALDVRIDEQGNKQVAVSGWQENSGVSLEQLVETY LPVGLKHVLCTDISRDGTLAGSNVSLYEEVCARYPQVAFQSSGGIGDIDDVAALRGTG VRGVIVGRALLEGKFTVKEAIACWQNA" gene 2095844..2096620 /gene="hisF" /locus_tag="b2025" /gene_synonym="ECK2020; JW2007" /db_xref="EcoGene:EG10448" /db_xref="GeneID:946516" CDS 2095844..2096620 /gene="hisF" /locus_tag="b2025" /gene_synonym="ECK2020; JW2007" /EC_number="2.4.2.-" /function="enzyme; Amino acid biosynthesis: Histidine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0000105 - histidine biosynthetic process" /note="imidazole glycerol phosphate synthase subunit in heterodimer with HisH = imidazole glycerol phsphate synthase holoenzyme" /codon_start=1 /transl_table=11 /product="imidazole glycerol phosphate synthase, catalytic subunit with HisH" /protein_id="NP_416529.1" /db_xref="GI:16129966" /db_xref="ASAP:ABE-0006727" /db_xref="UniProtKB/Swiss-Prot:P60664" /db_xref="EcoGene:EG10448" /db_xref="GeneID:946516" /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAKRYAEEGA DELVFYDITASSDGRVVDKSWVSRVAEVIDIPFCVAGGIKSLEDAAKILSFGADKISI NSPALADPTLITRLADRFGVQCIVVGIDTWYDAETGKYHVNQYTGDESRTRVTQWETL DWVQEVQKRGAGEIVLNMMNQDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLE AFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRIC" gene 2096614..2097225 /gene="hisI" /locus_tag="b2026" /gene_synonym="ECK2021; hisE; hisIE; JW2008" /db_xref="EcoGene:EG10451" /db_xref="GeneID:946515" CDS 2096614..2097225 /gene="hisI" /locus_tag="b2026" /gene_synonym="ECK2021; hisE; hisIE; JW2008" /EC_number="3.5.4.19" /EC_number="3.6.1.31" /function="enzyme; Amino acid biosynthesis: Histidine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0000105 - histidine biosynthetic process" /note="phosphoribosyl-amp cyclohydrolase; phosphoribosyl-ATP pyrophosphatase" /codon_start=1 /transl_table=11 /product="phosphoribosyl-AMP cyclohydrolase and phosphoribosyl-ATP pyrophosphatase" /protein_id="NP_416530.1" /db_xref="GI:16129967" /db_xref="ASAP:ABE-0006729" /db_xref="UniProtKB/Swiss-Prot:P06989" /db_xref="EcoGene:EG10451" /db_xref="GeneID:946515" /translation="MLTEQQRRELDWEKTDGLMPVIVQHAVSGEVLMLGYMNPEALDK TLESGKVTFFSRTKQRLWTKGETSGNFLNVVSIAPDCDNDTLLVLANPIGPTCHKGTS SCFGDTAHQWLFLYQLEQLLAERKSADPETSYTAKLYASGTKRIAQKVGEEGVETALA ATVHDRFELTNEASDLMYHLLVLLQDQGLDLTTVIENLRKRHQ" repeat_region 2097237..2097266 /note="REP143 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2097321..2098301) /gene="wzzB" /locus_tag="b2027" /gene_synonym="cld; ECK2022; JW5836; rol; wzz" /db_xref="EcoGene:EG13406" /db_xref="GeneID:946553" CDS complement(2097321..2098301) /gene="wzzB" /locus_tag="b2027" /gene_synonym="cld; ECK2022; JW5836; rol; wzz" /function="regulator; Outer membrane constituents" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009243 - O antigen biosynthetic process" /codon_start=1 /transl_table=11 /product="regulator of length of O-antigen component of lipopolysaccharide chains" /protein_id="NP_416531.4" /db_xref="GI:90111375" /db_xref="ASAP:ABE-0006731" /db_xref="UniProtKB/Swiss-Prot:P76372" /db_xref="EcoGene:EG13406" /db_xref="GeneID:946553" /translation="MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIAL AIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSA FSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVN QELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQ QTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIH AYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK" gene complement(2098447..2099613) /gene="ugd" /locus_tag="b2028" /gene_synonym="ECK2023; JW2010; pagA; pmrE; udg; yefA" /db_xref="EcoGene:EG13407" /db_xref="GeneID:946571" CDS complement(2098447..2099613) /gene="ugd" /locus_tag="b2028" /gene_synonym="ECK2023; JW2010; pagA; pmrE; udg; yefA" /EC_number="1.1.1.22" /function="enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009242 - colanic acid biosynthetic process; GO:0009269 - response to desiccation" /codon_start=1 /transl_table=11 /product="UDP-glucose 6-dehydrogenase" /protein_id="NP_416532.1" /db_xref="GI:16129969" /db_xref="ASAP:ABE-0006734" /db_xref="UniProtKB/Swiss-Prot:P76373" /db_xref="EcoGene:EG13407" /db_xref="GeneID:946571" /translation="MKITISGTGYVGLSNGLLIAQNHEVVALDILPSRVAMLNDRISP IVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIK DVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLREGKALYDNLHPSRIVI GERSERAERFAALLQEGAIKQNIPMLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYA ESLGLNSRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYQSVPNNLISAI VDANRTRKDFIADAILSRKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVII YEPVMKEDSFFNSRLERDLATFKQQADVIISNRMAEELKDVADKVYTRDLFGSD" gene complement(2099862..2101268) /gene="gnd" /locus_tag="b2029" /gene_synonym="ECK2024; JW2011" /db_xref="EcoGene:EG10411" /db_xref="GeneID:946554" CDS complement(2099862..2101268) /gene="gnd" /locus_tag="b2029" /gene_synonym="ECK2024; JW2011" /EC_number="1.1.1.44" /function="enzyme; Energy metabolism, carbon: Oxidative branch, pentose pathway" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0009052 - pentose-phosphate shunt, non-oxidative branch; GO:0009051 - pentose-phosphate shunt, oxidative branch" /codon_start=1 /transl_table=11 /product="6-phosphogluconate dehydrogenase, decarboxylating" /protein_id="NP_416533.1" /db_xref="GI:16129970" /db_xref="ASAP:ABE-0006737" /db_xref="UniProtKB/Swiss-Prot:P00350" /db_xref="EcoGene:EG10411" /db_xref="GeneID:946554" /translation="MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIA ENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGN TFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIA AVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQT FTEWNNGELSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEP LSLITESVFARYISSLKDQRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYA QGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPY FKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGA HTYKRIDKEGVFHTEWLD" gene complement(join(2101396..2101744,2102944..2103389)) /gene="wbbL" /locus_tag="b4571" /gene_synonym="ECK2025; JW2012; JW2016; yefJ" /pseudo /db_xref="EcoGene:EG11986" /db_xref="GeneID:4056030" CDS complement(join(2101396..2101744,2102944..2103389)) /gene="wbbL" /locus_tag="b4571" /gene_synonym="ECK2025; JW2012; JW2016; yefJ" /note="pseudogene, lipopolysaccharide biosynthesis protein" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0006744" /db_xref="ASAP:ABE-0285061" /db_xref="ASAP:ABE-0285104" /db_xref="UniProtKB/Swiss-Prot:P36667" /db_xref="EcoGene:EG11986" /db_xref="GeneID:4056030" mobile_element complement(2101749..2102943) /mobile_element_type="insertion sequence:IS5I" gene complement(2101895..2102911) /gene="insH1" /locus_tag="b2030" /gene_synonym="ECK0261" /db_xref="EcoGene:EG40008" /db_xref="GeneID:946577" CDS complement(2101895..2102911) /gene="insH1" /locus_tag="b2030" /gene_synonym="ECK0261" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS5 transposase and trans-activator" /protein_id="NP_416535.1" /db_xref="GI:16129971" /db_xref="ASAP:ABE-0006742" /db_xref="UniProtKB/Swiss-Prot:P0CE54" /db_xref="EcoGene:EG40008" /db_xref="GeneID:946577" /translation="MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQIL PWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLF ARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIE APSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQL GNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINI EYMKASIRARVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRADQMIRQW ERSH" gene complement(2103391..2104509) /gene="wbbK" /locus_tag="b2032" /gene_synonym="ECK2026; JW2017; yefI" /db_xref="EcoGene:EG11985" /db_xref="GeneID:946555" CDS complement(2103391..2104509) /gene="wbbK" /locus_tag="b2032" /gene_synonym="ECK2026; JW2017; yefI" /function="putative enzyme; Not classified" /note="putative glucose transferase" /codon_start=1 /transl_table=11 /product="lipopolysaccharide biosynthesis protein" /protein_id="NP_416536.1" /db_xref="GI:16129972" /db_xref="ASAP:ABE-0006747" /db_xref="UniProtKB/Swiss-Prot:P37751" /db_xref="EcoGene:EG11985" /db_xref="GeneID:946555" /translation="MGKSIVVVSAVNFTTGGPFTILKKFLAATNNKENVSFIALVHSA KELKESYPWVKFIEFPEVKGSWLKRLHFEYVVCKKLSKELNATHWICLHDITANVVTK KRYVYCHNPAPFYKGILFREILMEPSFFLFKMLYGLIYKINIKKNTAVFVQQFWMKEK FIKKYSINNIIVSRPEIKLSDKSQLTDDDSQFKNNPSELTIFYPAVPRVFKNYELIIS AARKLKEQSNIKFLLTISGTENAYAKYIISLAEGLDNVHFLGYLDKEKIDHCYNISDI VCFPSRLETWGLPLSEAKERGKWVLASDFPFTRETLGSYEKKAFFDSNNDDMLVKLII DFKKGNLKKDISDANFIYRNENVLVGFDELVNFITEEH" gene complement(2104494..2105084) /gene="wbbJ" /locus_tag="b2033" /gene_synonym="ECK2027; JW2018; yefH" /db_xref="EcoGene:EG11984" /db_xref="GeneID:946556" CDS complement(2104494..2105084) /gene="wbbJ" /locus_tag="b2033" /gene_synonym="ECK2027; JW2018; yefH" /function="putative enzyme; Not classified" /GO_process="GO:0009103 - lipopolysaccharide biosynthetic process" /note="putative O-acetyl transferase" /codon_start=1 /transl_table=11 /product="putative lipopolysaccharide biosynthesis O-acetyl transferase" /protein_id="NP_416537.1" /db_xref="GI:16129973" /db_xref="ASAP:ABE-0006749" /db_xref="UniProtKB/Swiss-Prot:P37750" /db_xref="EcoGene:EG11984" /db_xref="GeneID:946556" /translation="MILKLAKRYGLCGFIRLVRDVLLTRVFYRNCRIIRFPCYIRNDG SINFGENFTSGVGLRLDAFGRGVIFFSDNVQVNDYVHIASIESVTIGRDTLIASKVFI TDHNHGSFKHSDPMSSPNIPPDMRTLESSAVVIGQRVWLGENVTVLPGTIIGNGVVVG ANSVVRGSIPENTVIAGVPAKIIKKYNHETKLWEKA" gene complement(2105065..2106057) /gene="wbbI" /locus_tag="b2034" /gene_synonym="ECK2028; JW2019; yefG" /db_xref="EcoGene:EG11983" /db_xref="GeneID:947041" CDS complement(2105065..2106057) /gene="wbbI" /locus_tag="b2034" /gene_synonym="ECK2028; JW2019; yefG" /function="enzyme; Lipopolysaccharide biosynthesis" /note="putative Galf transferase" /codon_start=1 /transl_table=11 /product="d-Galf:alpha-d-Glc beta-1,6-galactofuranosyltransferase" /protein_id="NP_416538.1" /db_xref="GI:16129974" /db_xref="ASAP:ABE-0006751" /db_xref="UniProtKB/Swiss-Prot:P37749" /db_xref="EcoGene:EG11983" /db_xref="GeneID:947041" /translation="MYFLNDLNFSRRDAGFKARKDALDIASDYENISVVNIPLWGGVV QRIISSVKLSTFLCGLENKDVLIFNFPMAKPFWHILSFFHRLLKFRIVPLIHDIDELR GGGGSDSVRLATCDMVISHNPQMTKYLSKYMSQDKIKDIKIFDYLVSSDVEHRDVTDK QRGVIYAGNLSRHKCSFIYTEGCDFTLFGVNYENKDNPKYLGSFDAQSPEKINLPGMQ FGLIWDGDSVETCSGAFGDYLKFNNPHKTSLYLSMELPVFIWDKAALADFIVDNRIGY AVGSIKEMQEIVDSMTIETYKQISENTKIISQKIRTGSYFRDVLEEVIDDLKTR" gene complement(2106060..2107226) /gene="wbbH" /locus_tag="b2035" /gene_synonym="ECK2029; JW2020; rfc; yefF" /db_xref="EcoGene:EG11982" /db_xref="GeneID:945179" CDS complement(2106060..2107226) /gene="wbbH" /locus_tag="b2035" /gene_synonym="ECK2029; JW2020; rfc; yefF" /function="enzyme; Macromolecule metabolism: Lipopolysaccharide" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting; GO:0008755 - O antigen polymerase activity" /GO_process="GO:0009103 - lipopolysaccharide biosynthetic process; GO:0009243 - O antigen biosynthetic process" /codon_start=1 /transl_table=11 /product="O-antigen polymerase" /protein_id="NP_416539.1" /db_xref="GI:16129975" /db_xref="ASAP:ABE-0006753" /db_xref="UniProtKB/Swiss-Prot:P37748" /db_xref="EcoGene:EG11982" /db_xref="GeneID:945179" /translation="MIYLVISVFLITAFICLYLKKDIFYPAVCVNIIFALVLLGYEIT SDIYAFQLNDATLIFLLCNVLTFTLSCLLTESVLDLNIRKVNNAIYSIPSKKVHNVGL LVISFSMIYICMRLSNYQFGTSLLSYMNLIRDADVEDTSRNFSAYMQPIILTTFALFI WSKKFTNTKVSKTFTLLVFIVFIFAIILNTGKQIVFMVIISYAFIVGVNRVKHYVYLI TAVGVLFSLYMLFLRGLPGGMAYYLSMYLVSPIIAFQEFYFQQVSNSASSHVFWFFER LMGLLTGGVSMSLHKEFVWVGLPTNVYTAFSDYVYISAELSYLMMVIHGCISGVLWRL SRNYISVKIFYSYFIYTFSFIFYHESFMTNISSWIQITLCIIVFSQFLKAQKIK" gene complement(2107226..2108329) /gene="glf" /locus_tag="b2036" /gene_synonym="ECK2030; JW2021; yefE" /db_xref="EcoGene:EG11981" /db_xref="GeneID:945235" CDS complement(2107226..2108329) /gene="glf" /locus_tag="b2036" /gene_synonym="ECK2030; JW2021; yefE" /EC_number="5.4.99.9" /function="enzyme; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 8576037" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009243 - O antigen biosynthetic process" /note="UDP-galactopyranose mutase" /codon_start=1 /transl_table=11 /product="UDP-galactopyranose mutase, FAD/NAD(P)-binding" /protein_id="NP_416540.1" /db_xref="GI:16129976" /db_xref="ASAP:ABE-0006755" /db_xref="UniProtKB/Swiss-Prot:P37747" /db_xref="EcoGene:EG11981" /db_xref="GeneID:945235" /translation="MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTED CEGIQIHKYGAHIFHTNDKYIWDYVNDLVEFNRFTNSPLAIYKDKLFNLPFNMNTFHQ MWGVKDPQEAQNIINAQKKKYGDKVPENLEEQAISLVGEDLYQALIKGYTEKQWGRSA KELPAFIIKRIPVRFTFDNNYFSDRYQGIPVGGYTKLIEKMLEGVDVKLGIDFLKDKD SLASKAHRIIYTGPIDQYFDYRFGALEYRSLKFETERHEFPNFQGNAVINFTDANVPY TRIIEHKHFDYVETKHTVVTKEYPLEWKVGDEPYYPVNDNKNMELFKKYRELASREDK VIFGGRLAEYKYYDMHQVISAALYQVKNIMSTD" gene complement(2108337..2109584) /gene="wzxB" /locus_tag="b2037" /gene_synonym="ECK2031; JW2022; rfbX; wzx" /db_xref="EcoGene:EG11980" /db_xref="GeneID:946557" CDS complement(2108337..2109584) /gene="wzxB" /locus_tag="b2037" /gene_synonym="ECK2031; JW2022; rfbX; wzx" /function="putative transport; Surface polysaccharides & antigens" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009243 - O antigen biosynthetic process" /note="putative O-antigen transporter" /codon_start=1 /transl_table=11 /product="putative polisoprenol-linked O-antigen transporter" /protein_id="NP_416541.1" /db_xref="GI:16129977" /db_xref="ASAP:ABE-0006757" /db_xref="UniProtKB/Swiss-Prot:P37746" /db_xref="EcoGene:EG11980" /db_xref="GeneID:946557" /translation="MNTNKLSLRRNVIYLAVVQGSNYLLPLLTFPYLVRTLGPENFGI FGFCQATMLYMIMFVEYGFNLTATQSIAKAADSKDKVTSIFWAVIFSKIVLIVITLIF LTSMTLLVPEYNKHAVIIWSFVPALVGNLIYPIWLFQGKEKMKWLTLSSILSRLAIIP LTFIFVNTKSDIAIAGFIQSSANLVAGIIALAIVVHEGWIGKVTLSLHNVRRSLADGF HVFISTSAISLYSTGIVIILGFISGPTSVGNFNAANTIRNALQGLLNPITQAIYPRIS STLVLNRVKGVILIKKSLTCLSLIGGAFSLILLLGASILVKISIGPGYDNAVIVLMII SPLPFLISLSNVYGIQVMLTHNYKKEFSKILIAAGLLSLLLIFPLTTLFKEIGAAITL LATECLVTSLMLMFVRNNKLLVC" gene complement(2109581..2110138) /gene="rfbC" /locus_tag="b2038" /gene_synonym="ECK2032; JW2023; rfbD; rmlC" /db_xref="EcoGene:EG11979" /db_xref="GeneID:947482" CDS complement(2109581..2110138) /gene="rfbC" /locus_tag="b2038" /gene_synonym="ECK2032; JW2023; rfbD; rmlC" /EC_number="5.1.3.13" /function="enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0042803 - protein homodimerization activity" /GO_process="GO:0019305 - dTDP-rhamnose biosynthetic process; GO:0009103 - lipopolysaccharide biosynthetic process; GO:0009226 - nucleotide-sugar biosynthetic process; GO:0009243 - O antigen biosynthetic process" /note="dTDP-6-deoxy-D-glucose-3,5 epimerase" /codon_start=1 /transl_table=11 /product="dTDP-4-deoxyrhamnose-3,5-epimerase" /protein_id="NP_416542.1" /db_xref="GI:16129978" /db_xref="ASAP:ABE-0006759" /db_xref="UniProtKB/Swiss-Prot:P37745" /db_xref="EcoGene:EG11979" /db_xref="GeneID:947482" /translation="MNVIRTEIEDVLILEPRVFGDDRGFFYESFNQSAFEHILGYPVS FVQDNHSRSSKNVLRGLHFQRGEYAQDKLVRCTHGAVFDVAVDIRPNSVSFGKWVGVL LSADNKQQLWIPKGFAHGFLVLSDIAEFQYKTTNYYHPESDCGICWNDERIAIDWPQT SGLILSPKDERLFTLDELIRLKLIA" gene complement(2110138..2111019) /gene="rfbA" /locus_tag="b2039" /gene_synonym="ECK2033; JW2024; rmlA; som" /db_xref="EcoGene:EG11978" /db_xref="GeneID:945154" CDS complement(2110138..2111019) /gene="rfbA" /locus_tag="b2039" /gene_synonym="ECK2033; JW2024; rmlA; som" /EC_number="2.7.7.24" /function="enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting; GO:0000287 - magnesium ion binding" /GO_process="GO:0019305 - dTDP-rhamnose biosynthetic process; GO:0009103 - lipopolysaccharide biosynthetic process; GO:0009243 - O antigen biosynthetic process" /note="dTDP-glucose pyrophosphorylase" /codon_start=1 /transl_table=11 /product="glucose-1-phosphate thymidylyltransferase" /protein_id="NP_416543.1" /db_xref="GI:16129979" /db_xref="ASAP:ABE-0006762" /db_xref="UniProtKB/Swiss-Prot:P37744" /db_xref="EcoGene:EG11978" /db_xref="GeneID:945154" /translation="MKMRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTL MLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGG DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDKNGTAISL EEKPLEPKSNYAVTGLYFYDNDVVQMAKNLKPSARGELEITDINRIYLEQGRLSVAMM GRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKGFIDVEQVRKLAVPL IKNNYGQYLYKMTKDSN" gene complement(2111077..2111976) /gene="rfbD" /locus_tag="b2040" /gene_synonym="ECK2034; JW2025; rmlD" /db_xref="EcoGene:EG12411" /db_xref="GeneID:947117" CDS complement(2111077..2111976) /gene="rfbD" /locus_tag="b2040" /gene_synonym="ECK2034; JW2025; rmlD" /EC_number="1.1.1.133" /function="enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009226 - nucleotide-sugar biosynthetic process; GO:0009243 - O antigen biosynthetic process" /note="dTDP-6-deoxy-L-mannose-dehydrogenase" /codon_start=1 /transl_table=11 /product="dTDP-L-rhamnose synthase, NAD(P)-dependent dTDP-4-dehydrorhamnose reductase subunit" /protein_id="NP_416544.1" /db_xref="GI:16129980" /db_xref="ASAP:ABE-0006764" /db_xref="UniProtKB/Swiss-Prot:P37760" /db_xref="EcoGene:EG12411" /db_xref="GeneID:947117" /translation="MNILLFGKTGQVGWELQRALAPLGNLIAFDVHSTDYCGDFSNPE GVAETVRSIRPDIIVNAAAHTAVDKAESEPEFAQLINATSVEAIAKAANEVGAWVIHY STDYVFPGNGDMPWLETDATAPLNVYGETKLAGEKALQEYCAKHLIFRTSWVYAGKGN NFAKTMLRLAKEREELAVINDQFGAPTGAELLADCTAHAIRVALNKPDVAGLYHLVAS GTTTWYDYAALVFEEARKAGIPLALNKLNAVPTTAYPTPARRPHNSRLNTEKFQQNFA LVLPDWQVGVKRMLNELFTTTAI" gene complement(2111976..2113061) /gene="rfbB" /locus_tag="b2041" /gene_synonym="ECK2035; JW2026; rmlB; som" /db_xref="EcoGene:EG12412" /db_xref="GeneID:945276" CDS complement(2111976..2113061) /gene="rfbB" /locus_tag="b2041" /gene_synonym="ECK2035; JW2026; rmlB; som" /EC_number="4.2.1.46" /function="enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009435 - NAD biosynthetic process; GO:0009226 - nucleotide-sugar biosynthetic process; GO:0009243 - O antigen biosynthetic process" /note="dTDP-glucose 4,6 dehydratase" /codon_start=1 /transl_table=11 /product="dTDP-glucose 4,6 dehydratase, NAD(P)-binding" /protein_id="NP_416545.1" /db_xref="GI:16129981" /db_xref="ASAP:ABE-0006766" /db_xref="UniProtKB/Swiss-Prot:P37759" /db_xref="EcoGene:EG12412" /db_xref="GeneID:945276" /translation="MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNRESLA DVSDSERYVFEHADICDAPAMARIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIV GTYVLLEAARNYWSALDSDKKNSFRFHHISTDEVYGDLPHPDEVNNTEELPLFTETTA YAPSSPYSASKASSDHLVRAWKRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEG KALPIYGKGDQIRDWLYVEDHARALYTVVTEGKAGETYNIGGHNEKKNIDVVLTICDL LDEIVPKEKSYREQITYVADRPGHDRRYAIDAEKIGRALGWKPQETFESGIRKTVEWY LSNTKWVDNVKSGAYQSWIEQNYEGRQ" gene complement(2113434..2114327) /gene="wcaN" /locus_tag="b2042" /gene_synonym="ECK2036; galF; JW2027" /db_xref="EcoGene:EG13578" /db_xref="GeneID:946560" CDS complement(2113434..2114327) /gene="wcaN" /locus_tag="b2042" /gene_synonym="ECK2036; galF; JW2027" /function="putative enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009226 - nucleotide-sugar biosynthetic process" /codon_start=1 /transl_table=11 /product="putative regulatory subunit for GalU" /protein_id="NP_416546.1" /db_xref="GI:16129982" /db_xref="ASAP:ABE-0006771" /db_xref="UniProtKB/Swiss-Prot:P0AAB6" /db_xref="EcoGene:EG13578" /db_xref="GeneID:946560" /translation="MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEI VAAGIKEILLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNV RQGEPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRS QVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDIMAVGRYVLS ADIWPELERTQPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY GLRNLKEGAKFRKGIEKLLSE" gene complement(2114502..2115896) /gene="wcaM" /locus_tag="b2043" /gene_synonym="ECK2037; JW2028; yefK" /db_xref="EcoGene:EG12651" /db_xref="GeneID:946561" CDS complement(2114502..2115896) /gene="wcaM" /locus_tag="b2043" /gene_synonym="ECK2037; JW2028; yefK" /GO_process="GO:0009242 - colanic acid biosynthetic process" /note="putative colanic acid biosynthesis protein" /codon_start=1 /transl_table=11 /product="colanic acid biosynthesis protein" /protein_id="NP_416547.1" /db_xref="GI:16129983" /db_xref="ASAP:ABE-0006774" /db_xref="UniProtKB/Swiss-Prot:P71244" /db_xref="EcoGene:EG12651" /db_xref="GeneID:946561" /translation="MPFKKLSRRTFLTASSALAFLHTPFARALPARQSVNINDYNPHD WIASFKQAFSEGQTVVVPAGLVCDNINTGIFIPPGKTLHILGSLRGNGRGRFVLQDGS QVTGEDGGSMHNITLDVRGSDCTIKGLTMSGFGPVTQIYIGGKNKRVMRNLIIDNLTV SHANYAILRQGFHNQIIGANITNCKFSDLQGDAIEWNVAINDRDILISDHVIERINCT NGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVENGKHFVIRNIK ARNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNF RVNDIQLDNTHLAYKLRGIQISAGNAVSFVALTNIEMKRASLELHNKPQHFFMRNINV MQESSVGPALSMNFDMRKDVRGVFMAKKETLLSLANVHAVNEKGQSSVDIDRINHHIV NVEKINFRLPELRE" gene complement(2115907..2117127) /gene="wcaL" /locus_tag="b2044" /gene_synonym="ECK2038; JW2029; yefL" /db_xref="EcoGene:EG12652" /db_xref="GeneID:946565" CDS complement(2115907..2117127) /gene="wcaL" /locus_tag="b2044" /gene_synonym="ECK2038; JW2029; yefL" /function="putative enzyme; Not classified" /GO_process="GO:0009242 - colanic acid biosynthetic process" /note="putative colanic acid biosynthesis glycosyl transferase" /codon_start=1 /transl_table=11 /product="putative glycosyl transferase" /protein_id="NP_416548.1" /db_xref="GI:16129984" /db_xref="ASAP:ABE-0006777" /db_xref="UniProtKB/Swiss-Prot:P71243" /db_xref="EcoGene:EG12652" /db_xref="GeneID:946565" /translation="MKVGFFLLKFPLSSETFVLNQITAFIDMGFEVEILALQKGDTQN THAAWTKYNLAARTRWLQDEPTGKVAKLRHRASQTLRGIHRKNTWQALNLKRYGAESR NLILSAICGQVATPFRADVFIAHFGPAGVTAAKLRELGVIRGKIATIFHGIDISSREV LNHYTPEYQQLFRRGDLMLPISDLWAGRLQKMGCPREKIAVSRMGVDMTRFSPRPVKA PATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQ LEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVST LHSGIPELVEADKSGWLVPENDARALAQRLAAFSQLDTDELAPVVKRAREKVEHDFNQ QVINRELASLLQAL" gene complement(2117124..2118404) /gene="wcaK" /locus_tag="b2045" /gene_synonym="ECK2039; JW2030" /db_xref="EcoGene:EG13577" /db_xref="GeneID:946569" CDS complement(2117124..2118404) /gene="wcaK" /locus_tag="b2045" /gene_synonym="ECK2039; JW2030" /function="putative enzyme; Not classified" /GO_process="GO:0009242 - colanic acid biosynthetic process" /note="putative galactokinase" /codon_start=1 /transl_table=11 /product="colanic acid biosynthesis protein" /protein_id="NP_416549.1" /db_xref="GI:16129985" /db_xref="ASAP:ABE-0006780" /db_xref="UniProtKB/Swiss-Prot:P71242" /db_xref="EcoGene:EG13577" /db_xref="GeneID:946569" /translation="MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPV SSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVLRRRYQHQVLLSRVTDTGKLRNI AIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCTFMAKKPLFMIGHSVGP FQDEQFNQLANYVFGHCDALILRESVSFDLMKRSNITTAKVEHGVDTAWLVDHHTEDF TASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRILDEGYQV IALSTCTGIDSYNKDDRMVALNLRQHISDPARYHVVMDELNDLEMGKILGACELTVGT RLHSAIISMNFATPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQ LPALNARLSEAVSRERQTGMQMVQSVLERIGEVK" repeat_region 2118466..2118651 /note="REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences" gene complement(2118680..2120158) /gene="wzxC" /locus_tag="b2046" /gene_synonym="ECK2040; JW2031; wzx" /db_xref="EcoGene:EG13576" /db_xref="GeneID:946581" CDS complement(2118680..2120158) /gene="wzxC" /locus_tag="b2046" /gene_synonym="ECK2040; JW2031; wzx" /function="putative transport; Protein, peptide secretion" /note="probable export protein" /codon_start=1 /transl_table=11 /product="putative colanic acid exporter" /protein_id="NP_416550.1" /db_xref="GI:16129986" /db_xref="ASAP:ABE-0006783" /db_xref="UniProtKB/Swiss-Prot:P77377" /db_xref="EcoGene:EG13576" /db_xref="GeneID:946581" /translation="MSLREKTISGAKWSAIATVIIIGLGLVQMTVLARIIDNHQFGLL TVSLVIIALADTLSDFGIANSIIQRKEISHLELTTLYWLNVGLGIVVCVAVFLLSDLI GDVLNNPDLAPLIKTLSLAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTCTV VSAHFWPLAMTAILGYLVNSAVRTLLFGYFGRKIYRPGLHFSLASVAPNLRFGAWLTA DSIINYLNTNLSTLVLARILGAGVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQ DDTEKLRVNFYKLLSVVGIINFPALLGLMVVSNNFVPLVFGEKWNSIIPVLQLLCVVG LLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIVIGGQMAGAIGVTLGFLLVQI INTILSYFVMIKPVLGSSYRQYILSLWLPFYLSLPTLVVSYALGIVLKGQLALGMLLA VQIATGVLAFVVMIVLSRHPLVVEVKRQFCRSEKMKMLLRAG" gene complement(2120160..2121554) /gene="wcaJ" /locus_tag="b2047" /gene_synonym="ECK2041; JW2032" /db_xref="EcoGene:EG13575" /db_xref="GeneID:946583" CDS complement(2120160..2121554) /gene="wcaJ" /locus_tag="b2047" /gene_synonym="ECK2041; JW2032" /function="putative enzyme; Not classified" /GO_process="GO:0009242 - colanic acid biosynthetic process" /note="putative UDP-glucose lipid carrier transferase" /codon_start=1 /transl_table=11 /product="colanic biosynthesis UDP-glucose lipid carrier transferase" /protein_id="NP_416551.1" /db_xref="GI:16129987" /db_xref="ASAP:ABE-0006785" /db_xref="UniProtKB/Swiss-Prot:P71241" /db_xref="EcoGene:EG13575" /db_xref="GeneID:946583" /translation="MTNLKKRERAKTNASLISMVQRFSDITIMFAGLWLVCEVSGLSF LYMHLLVALITLVVFQMLGGITDFYRSWRGVRAATEFALLLQNWTLSVIFSAGLVAFN NDFDTQLKIWLAWYALTSIGLVVCRSCIRIGAGWLRNHGYNKRMVAVAGDLAAGQMLM ESFRNQPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMQMCDGA RVKKLVHQLADTTCSVLLIPDVFTFNILHSRLEEMNGVPVVPLYDTPLSGVNRLLKRA EDIVLATLILLLISPVLCCIALAVKLSSPGPVIFRQTRYGMDGKPIKVWKFRSMKVME NDKVVTQATQNDPRVTKVGNFLRRTSLDELPQFINVLTGGMSIVGPRPHAVAHNEQYR QLIEGYMLRHKVKPGITGWAQINGWRGETDTLEKMEKRVEFDLEYIREWSVWFDIKIV FLTVFKGFVNKAAY" gene complement(2121609..2122979) /gene="cpsG" /locus_tag="b2048" /gene_synonym="ECK2042; JW2033; manB; rfbK" /db_xref="EcoGene:EG10162" /db_xref="GeneID:946574" CDS complement(2121609..2122979) /gene="cpsG" /locus_tag="b2048" /gene_synonym="ECK2042; JW2033; manB; rfbK" /EC_number="5.4.2.8" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009242 - colanic acid biosynthetic process; GO:0009226 - nucleotide-sugar biosynthetic process; GO:0009269 - response to desiccation" /codon_start=1 /transl_table=11 /product="phosphomannomutase" /protein_id="NP_416552.1" /db_xref="GI:16129988" /db_xref="ASAP:ABE-0006788" /db_xref="UniProtKB/Swiss-Prot:P24175" /db_xref="EcoGene:EG10162" /db_xref="GeneID:946574" /translation="MKKLTCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLKPKTIVLG GDVRLTSETLKLALAKGLQDAGVDVLDIGMSGTEEIYFATFHLGVDGGIEVTASHNPM DYNGMKLVREGARPISGDTGLRDVQRLAEANDFPPVDETKRGRYQQINLRDAYVDHLF GYINVKNLTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIP NPLLPECRDDTRNAVIKHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLE KNPGAKIIHDPRLSWNTVDVVTAAGGTPVMSKTGHAFIKERMRKEDAIYGGEMSAHHY FRDFAYCDSGMIPWLLVAELVCLKDKTLGELVRDRMAAFPASGEINSKLAQPVEAINR VEQHFSREALAVDRTDGISMTFADWRFNLRTSNTEPVVRLNVESRGDVPLMEARTRTL LTLLNE" gene complement(2123084..2124520) /gene="cpsB" /locus_tag="b2049" /gene_synonym="ECK2043; JW2034; manC; mni; rfbM" /db_xref="EcoGene:EG10161" /db_xref="GeneID:946580" CDS complement(2123084..2124520) /gene="cpsB" /locus_tag="b2049" /gene_synonym="ECK2043; JW2034; manC; mni; rfbM" /EC_number="2.7.7.22" /function="enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0009242 - colanic acid biosynthetic process; GO:0009226 - nucleotide-sugar biosynthetic process; GO:0009269 - response to desiccation" /codon_start=1 /transl_table=11 /product="mannose-1-phosphate guanyltransferase" /protein_id="NP_416553.1" /db_xref="GI:16129989" /db_xref="ASAP:ABE-0006791" /db_xref="UniProtKB/Swiss-Prot:P24174" /db_xref="EcoGene:EG10161" /db_xref="GeneID:946580" /translation="MAQSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTT ICRLNGVECESPVVICNEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAALAA KRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGY IRRGEVSAGEQDMVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELK KYRPDILDACEKAMSAVDPDLNFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAG WSDVGSWSSLWEISAHTAEGNVCHGDVINHKTENSYVYAESGLVTTVGVKDLVVVQTK DAVLIADRNAVQDVKKVVEQIKADGRHEHRVHREVYRPWGKYDSIDAGDRYQVKRITV KPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENPGKI PLDLIEVRSGSYLEEDDVVRFADRYGRV" gene complement(2124523..2125746) /gene="wcaI" /locus_tag="b2050" /gene_synonym="ECK2044; JW2035; yefD" /db_xref="EcoGene:EG11790" /db_xref="GeneID:946588" CDS complement(2124523..2125746) /gene="wcaI" /locus_tag="b2050" /gene_synonym="ECK2044; JW2035; yefD" /function="putative enzyme; Not classified" /GO_process="GO:0009242 - colanic acid biosynthetic process" /note="putative colanic biosynthesis glycosyl transferase" /codon_start=1 /transl_table=11 /product="putative glycosyl transferase" /protein_id="NP_416554.1" /db_xref="GI:16129990" /db_xref="ASAP:ABE-0006794" /db_xref="UniProtKB/Swiss-Prot:P32057" /db_xref="EcoGene:EG11790" /db_xref="GeneID:946588" /translation="MKILVYGINYSPELTGIGKYTGEMVEWLAAQGHEVRVITAPPYY PQWQVGENYSAWRYKREEGAATVWRCPLYVPKQPSTLKRLLHLGSFAVSSFFPLMAQR RWKPDRIIGVVPTLFCAPGMRLLAKLSGARTVLHIQDYEVDAMLGLGLAGKGKGGKVA QLATAFERSGLHNVDNVSTISRSMMNKAIEKGVAAENVIFFPNWSEIARFQHVADADV DALRNQLDLPDNKKIILYSGNIGEKQGLENVIEAADRLRDEPLIFAIVGQGGGKARLE KMAQQRGLRNMQFFPLQSYDALPALLKMGDCHLVVQKRGAADAVLPSKLTNILAVGGN AVITAEAYTELGQLCETFPGIAVCVEPESVEALVAGIRQALLLPKHNTVAREYAERTL DKENVLRQFINDIRG" gene complement(2125743..2126222) /gene="wcaH" /locus_tag="b2051" /gene_synonym="ECK2045; gmm; JW5335; nudD; yefC" /db_xref="EcoGene:EG11789" /db_xref="GeneID:946559" CDS complement(2125743..2126222) /gene="wcaH" /locus_tag="b2051" /gene_synonym="ECK2045; gmm; JW5335; nudD; yefC" /EC_number="1.1.1.271" /function="enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions" /GO_process="GO:0009242 - colanic acid biosynthetic process; GO:0009226 - nucleotide-sugar biosynthetic process" /codon_start=1 /transl_table=11 /product="GDP-mannose mannosyl hydrolase" /protein_id="NP_416555.2" /db_xref="GI:90111376" /db_xref="ASAP:ABE-0006796" /db_xref="UniProtKB/Swiss-Prot:P32056" /db_xref="EcoGene:EG11789" /db_xref="GeneID:946559" /translation="MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGY WFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHY VVLGFRFRVSEEELLLPDEQHDDYRWLTSDALLASDNVHANSRAYFLAEKRTGVPGL" gene complement(2126225..2127190) /gene="wcaG" /locus_tag="b2052" /gene_synonym="ECK2046; fcl; JW2037; yefB" /db_xref="EcoGene:EG11788" /db_xref="GeneID:946563" CDS complement(2126225..2127190) /gene="wcaG" /locus_tag="b2052" /gene_synonym="ECK2046; fcl; JW2037; yefB" /EC_number="1.1.1.271" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009242 - colanic acid biosynthetic process; GO:0009269 - response to desiccation" /codon_start=1 /transl_table=11 /product="bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase" /protein_id="NP_416556.1" /db_xref="GI:16129992" /db_xref="ASAP:ABE-0006801" /db_xref="UniProtKB/Swiss-Prot:P32055" /db_xref="EcoGene:EG11788" /db_xref="GeneID:946563" /translation="MSKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDS RAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKL LFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRS VMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMA AASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASK PDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLENQDRFRG" gene complement(2127193..2128314) /gene="gmd" /locus_tag="b2053" /gene_synonym="ECK2047; JW2038; yefA; yefN" /db_xref="EcoGene:EG11787" /db_xref="GeneID:946562" CDS complement(2127193..2128314) /gene="gmd" /locus_tag="b2053" /gene_synonym="ECK2047; JW2038; yefA; yefN" /EC_number="4.2.1.47" /function="enzyme; Central intermediary metabolism: Sugar-nucleotide biosynthesis, conversions" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009242 - colanic acid biosynthetic process; GO:0009435 - NAD biosynthetic process; GO:0009269 - response to desiccation" /codon_start=1 /transl_table=11 /product="GDP-D-mannose dehydratase, NAD(P)-binding" /protein_id="NP_416557.1" /db_xref="GI:16129993" /db_xref="ASAP:ABE-0006803" /db_xref="UniProtKB/Swiss-Prot:P0AC88" /db_xref="EcoGene:EG11787" /db_xref="GeneID:946562" /translation="MSKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERV DHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYT ADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVA KLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL GNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRF EGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWK PEITLREMVSEMVANDLEAAKKHSLLKSHGYDVAIALES" gene complement(2128340..2128888) /gene="wcaF" /locus_tag="b2054" /gene_synonym="ECK2048; JW2039" /db_xref="EcoGene:EG13574" /db_xref="GeneID:946578" CDS complement(2128340..2128888) /gene="wcaF" /locus_tag="b2054" /gene_synonym="ECK2048; JW2039" /function="putative enzyme; Not classified" /GO_process="GO:0009242 - colanic acid biosynthetic process" /note="putative transferase" /codon_start=1 /transl_table=11 /product="putative acyl transferase" /protein_id="NP_416558.1" /db_xref="GI:16129994" /db_xref="ASAP:ABE-0006805" /db_xref="UniProtKB/Swiss-Prot:P0ACD2" /db_xref="EcoGene:EG13574" /db_xref="GeneID:946578" /translation="MQDLSGFSVPKGFRGGNAIKVQLWWAVQATIFAWSPQVLYRWRA FLLRLFGAKIGKNVVIRPSVKITYPWKLTLGDYAWVGDDVNLYTLGEITIGAHSVISQ KSYLCTGSHDHASQHFTINATPIVIGEKCWLATDVFVAPGVTIGDGTVVGARSSVFKS LPANVVCRGNPAVVIRERVETE" gene complement(2128904..2129650) /gene="wcaE" /locus_tag="b2055" /gene_synonym="ECK2049; JW2040" /db_xref="EcoGene:EG13573" /db_xref="GeneID:946543" CDS complement(2128904..2129650) /gene="wcaE" /locus_tag="b2055" /gene_synonym="ECK2049; JW2040" /function="putative enzyme; Not classified" /GO_process="GO:0009242 - colanic acid biosynthetic process" /note="putative colanic acid biosynthesis glycosyl transferase" /codon_start=1 /transl_table=11 /product="putative glycosyl transferase" /protein_id="NP_416559.1" /db_xref="GI:16129995" /db_xref="ASAP:ABE-0006807" /db_xref="UniProtKB/Swiss-Prot:P71239" /db_xref="EcoGene:EG13573" /db_xref="GeneID:946543" /translation="MLLSIITVAFRNLEGIVKTHASLAHLAQVEDISFEWIVVDGGSN DGTREYLENLNGIFNLRFVSEPDNGIYDAMNKGIAMAQGKFALFLNSGDIFHQNAANF VRKLKMQKDNVMITGDALLDFGDGHKIKRSAKPGWYIYHSLPASHQAIFFPVSGLKKW RYDLEYKVSSDYALAAKMYKAGYAFKKLNGLVSEFSMGGVSTTNNMELCADAKKVQRQ ILHVPGFWAELSWHLRQRTTSKTKALYNKV" gene complement(2129661..2130878) /gene="wcaD" /locus_tag="b2056" /gene_synonym="ECK2050; JW2041" /db_xref="EcoGene:EG13572" /db_xref="GeneID:946550" CDS complement(2129661..2130878) /gene="wcaD" /locus_tag="b2056" /gene_synonym="ECK2050; JW2041" /function="putative enzyme; Phage-related functions and prophages" /codon_start=1 /transl_table=11 /product="putative colanic acid polymerase" /protein_id="NP_416560.1" /db_xref="GI:16129996" /db_xref="ASAP:ABE-0006809" /db_xref="UniProtKB/Swiss-Prot:P71238" /db_xref="EcoGene:EG13572" /db_xref="GeneID:946550" /translation="MSTSIRICSYLLLPLIYLLVNVKIAQLGESFPITIVTFLPVLLL LFLERISVKKLMIALGIGAGLTAFNYLFGQSLDASKYVTSTMLFVYIVIIIGMVWSIR FKTISPHNHRKILRFFYLVVGLVVALAAVEMAQIILTGGSSIMESISKYLIYSNSYVL NFIKFGGKRTTALYFEPAFFALALISIWLSIKQFGIKTPKTDAMILAGIILSGSFSGV MTFILFYLLEWAFQYLNKEAIKKKLPLALISLAVFLVGVVIAFPYISTRLGDLGTEGS SSYYRIVGPLVMVGYSLTHIDGVVRFGSLYEYVASFGIFNGADVGKTIDNGLYLLIIY FSWFAVFLSLWYMGKVIKMMINAFGDNRNFRVQLYLFTPVSLFFTGSIFSPEYAFLIV CPFILRKALNITR" gene complement(2130853..2132070) /gene="wcaC" /locus_tag="b2057" /gene_synonym="ECK2051; JW2042" /db_xref="EcoGene:EG13571" /db_xref="GeneID:946579" CDS complement(2130853..2132070) /gene="wcaC" /locus_tag="b2057" /gene_synonym="ECK2051; JW2042" /function="putative enzyme; Not classified" /GO_process="GO:0009242 - colanic acid biosynthetic process" /codon_start=1 /transl_table=11 /product="putative glycosyl transferase" /protein_id="NP_416561.1" /db_xref="GI:16129997" /db_xref="ASAP:ABE-0006811" /db_xref="UniProtKB/Swiss-Prot:P71237" /db_xref="EcoGene:EG13571" /db_xref="GeneID:946579" /translation="MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGK ESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFGNFNELYRTITRTAGPVVLHFHV LHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP TLNNYPPVKIDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIIN NGIDMATEAILADLPPVRETQGKPKIAVVAHDLRYDGKTNQQLVREMMALGDKIELHT FGKFSPFTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVI ATHSDAAREVLQKSGGKTVSEEEVLQLVQLSKPEIAQAIFGTTLAEFSQRSRAAYSGQ QMLEEYVNFYQNL" gene complement(2132067..2132555) /gene="wcaB" /locus_tag="b2058" /gene_synonym="ECK2052; JW2043" /db_xref="EcoGene:EG13570" /db_xref="GeneID:946573" CDS complement(2132067..2132555) /gene="wcaB" /locus_tag="b2058" /gene_synonym="ECK2052; JW2043" /function="putative enzyme; Not classified" /GO_process="GO:0009242 - colanic acid biosynthetic process" /note="putative transferase" /codon_start=1 /transl_table=11 /product="putative acyl transferase" /protein_id="NP_416562.1" /db_xref="GI:16129998" /db_xref="ASAP:ABE-0006813" /db_xref="UniProtKB/Swiss-Prot:P0ACC9" /db_xref="EcoGene:EG13570" /db_xref="GeneID:946573" /translation="MLEDLRANSWSLRPCCMVLAYRVAHFCSVWRKKNVLNNLWAAPL LVLYRIITECFFGYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRG ADNMACPHIGNGVELGANVIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARVKV IK" gene complement(2132558..2133397) /gene="wcaA" /locus_tag="b2059" /gene_synonym="ECK2053; JW2044" /db_xref="EcoGene:EG13569" /db_xref="GeneID:946570" CDS complement(2132558..2133397) /gene="wcaA" /locus_tag="b2059" /gene_synonym="ECK2053; JW2044" /function="putative regulator; Not classified" /GO_process="GO:0009242 - colanic acid biosynthetic process" /note="putative regulator" /codon_start=1 /transl_table=11 /product="putative glycosyl transferase" /protein_id="NP_416563.1" /db_xref="GI:16129999" /db_xref="ASAP:ABE-0006816" /db_xref="UniProtKB/Swiss-Prot:P77414" /db_xref="EcoGene:EG13569" /db_xref="GeneID:946570" /translation="MKNNPLISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCS TSWEQLQQYVTALNDPRITYIHNDINSGACAVRNQAIMLAQGEYITGIDDDDEWTPNR LSVFLAHKQQLVTHAFLYANDYVCQGEVYSQPASLPLYPKSPYSRRLFYKRNIIGNQV FTWAWRFKECLFDTELKAAQDYDIFLRMVVEYGEPWKVEEATQILHINHGEMQITSSP KKFSGYFHFYRKHKDKFDRASKKYQLFTLYQIRNKRMTWRTLLTLLSVRNGKRLADGI RGR" repeat_region 2133432..2133465 /note="REP145 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2133490..2135652) /gene="wzc" /locus_tag="b2060" /gene_synonym="ECK2054; JW2045" /db_xref="EcoGene:EG13568" /db_xref="GeneID:946567" CDS complement(2133490..2135652) /gene="wzc" /locus_tag="b2060" /gene_synonym="ECK2054; JW2045" /EC_number="2.7.10.2" /function="enzyme; Not classified" /GO_process="GO:0009242 - colanic acid biosynthetic process; GO:0006464 - protein modification process" /codon_start=1 /transl_table=11 /product="colanic acid production tyrosine-protein kinase; autokinase; Ugd phosphorylase" /protein_id="NP_416564.4" /db_xref="GI:90111377" /db_xref="ASAP:ABE-0006819" /db_xref="UniProtKB/Swiss-Prot:P76387" /db_xref="EcoGene:EG13568" /db_xref="GeneID:946567" /translation="MTEKVKQHAAPVTGSDEIDIGRLVGTVIEARWWVIGITTVFALC AVVYTFFATPIYSADALVQIEQNSGNSLVQDIGSALANKPPASDAEIQLIRSRLVLGK TVDDLDLDIAVSKNTFPIFGAGWDRLMGRQNETVKVTTFNRPKEMADQVFTLNVLDNK NYTLSSDGGFSARGQAGQMLKKEGVTLMVEAIHASPGSEFTVTKYSTLGMINQLQNSL TVTENGKDAGVLSLTYTGEDREQIRDILNSIARNYQEQNIERKSAEASKSLAFLAQQL PEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLY TKVHPAYRTLLEKRQALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNK EQELKITEASTVGDVRIVDPAITQPGVLKPKKGLIILGAIILGLMLSIVGVLLRSLFN RGIESPQVLEEHGISVYASIPLSEWQKARDSVKTIKGIKRYKQSQLLAVGNPTDLAIE AIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMR KGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKFDLIPRGQVPPNPSELLMSER FAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSR FEQNGIPVKGVILNSIFRRASAYQDYGYYEYEYKSDAK" gene complement(2135655..2136098) /gene="wzb" /locus_tag="b2061" /gene_synonym="ECK2055; JW2046" /db_xref="EcoGene:EG13567" /db_xref="GeneID:946564" CDS complement(2135655..2136098) /gene="wzb" /locus_tag="b2061" /gene_synonym="ECK2055; JW2046" /EC_number="3.1.3.48" /function="enzyme; Not classified" /GO_process="GO:0009242 - colanic acid biosynthetic process" /note="low molecular weight protein-tyrosine-phosphatase" /codon_start=1 /transl_table=11 /product="colanic acid production protein-tyrosine-phosphatase; Wzc-P dephosphorylase" /protein_id="NP_416565.1" /db_xref="GI:16130001" /db_xref="ASAP:ABE-0006822" /db_xref="UniProtKB/Swiss-Prot:P0AAB2" /db_xref="EcoGene:EG13567" /db_xref="GeneID:946564" /translation="MFNNILVVCVGNICRSPTAERLLQRYHPELKVESAGLGALVGKG ADPTAISVAAEHQLSLEGHCARQISRRLCRNYDLILTMEKRHIERLCEMAPEMRGKVM LFGHWDNECEIPDPYRKSRETFAAVYTLLERSARQWAQALNAEQV" gene complement(2136104..2137243) /gene="wza" /locus_tag="b2062" /gene_synonym="ECK2056; JW2047" /db_xref="EcoGene:EG13566" /db_xref="GeneID:946558" CDS complement(2136104..2137243) /gene="wza" /locus_tag="b2062" /gene_synonym="ECK2056; JW2047" /function="transport; Not classified" /note="putative polysaccharide export protein" /codon_start=1 /transl_table=11 /product="colanic acid export protein; outer membrane auxillary lipoprotein" /protein_id="NP_416566.1" /db_xref="GI:16130002" /db_xref="ASAP:ABE-0006825" /db_xref="UniProtKB/Swiss-Prot:P0A930" /db_xref="EcoGene:EG13566" /db_xref="GeneID:946558" /translation="MMKSKMKLMPLLVSVTLISGCTVLPGSNMSTMGKDVIKQQDADF DLDKMVNVYPLTPRLIDQLRPRPNVARPNMTLESEIANYQYRVGPGDVLNVTVWDHPE LTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVHVVGKTLAEIRSDITGRLATYIADPQ VDVNIAAFRSQKAYISGQVNKSGQQAITNVPLTILDAINAAGGLTDTADWRNVVLTHN GREERISLQALMQNGDLNQNRLLYPGDILYVPRNDDLKVFVMGEVKKQSTLKMDFSGM TLTEALGNAEGIDMTTSNASGIFVIRPLKGEGGRNGKIANIYQLDMSDATSLVMATEF RLQPYDVVYVTTAPVSRWNRLINQLLPTISGVRYMTDTASDIHNW" gene 2137902..2139485 /gene="yegH" /locus_tag="b2063" /gene_synonym="ECK2057; JW5336" /db_xref="EcoGene:EG14051" /db_xref="GeneID:946566" CDS 2137902..2139485 /gene="yegH" /locus_tag="b2063" /gene_synonym="ECK2057; JW5336" /function="putative transport; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="inner membrane protein" /protein_id="NP_416567.4" /db_xref="GI:90111378" /db_xref="ASAP:ABE-0006830" /db_xref="UniProtKB/Swiss-Prot:P76389" /db_xref="EcoGene:EG14051" /db_xref="GeneID:946566" /translation="MEWIADPSIWAGLITLIVIELVLGIDNLVFIAILAEKLPPKQRD RARVTGLLLAMLMRLLLLASISWLVTLTQPLFSFRSFTFSARDLIMLFGGFFLLFKAT MELNERLEGKDSNNPTQRKGAKFWGVVTQIVVLDAIFSLDSVITAVGMVDHLLVMMAA VVIAISLMLMASKPLTQFVNSHPTIVILCLSFLLMIGFSLVAEGFGFVIPKGYLYAAI GFSVMIEALNQLAIFNRRRFLSANQTLRQRTTEAVMRLLSGQKEDAELDAETASMLVD HGNQQIFNPQERRMIERVLNLNQRTVSSIMTSRHDIEHIDLNAPEEEIRQLLERNQHT RLVVTDGDDAEDLLGVVHVIDLLQQSLRGEPLNLRVLIRQPLVFPETLPLLPALEQFR NARTHFAFVVDEFGSVEGIVTLSDVTETIAGNLPNEVEEIDARHDIQKNADGSWTANG HMPLEDLVQYVPLPLDEKREYHTIAGLLMEYLQRIPKPGEEVQVGDYLLKTLQVESHR VQKVQIIPLRKDGEMEYEV" repeat_region 2139702..2139738 /note="REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2139759..2141612) /gene="asmA" /locus_tag="b2064" /gene_synonym="ECK2058; JW2049; yegA" /db_xref="EcoGene:EG11361" /db_xref="GeneID:946582" CDS complement(2139759..2141612) /gene="asmA" /locus_tag="b2064" /gene_synonym="ECK2058; JW2049; yegA" /function="phenotype; Outer membrane constituents" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009103 - lipopolysaccharide biosynthetic process" /note="suppressor of ompF assembly mutants" /codon_start=1 /transl_table=11 /product="suppressor of OmpF assembly mutants; putative outer membrane protein assembly factor; inner membrane-anchored periplasmic protein" /protein_id="NP_416568.1" /db_xref="GI:16130004" /db_xref="ASAP:ABE-0006833" /db_xref="UniProtKB/Swiss-Prot:P28249" /db_xref="EcoGene:EG11361" /db_xref="GeneID:946582" /translation="MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRDYMVKQVAARSG YQLQLDGPLRWHVWPQLSILSGRMSLTAQGASQPLVRADNMRLDVALLPLLSHQLSVK QVMLKGAVIQLTPQTEAVRSEDAPVAPRDNTLPDLSDDRGWSFDISSLKVADSVLVFQ HEDDEQVTIRNIRLQMEQDPQHRGSFEFSGRVNRDQRDLTISLNGTVDASDYPHDLTA AIEQINWQLQGADLPKQGIQGQGSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVTL TEKPEWQLRLQFPQLNLDNLIPLNETANGENGAAQQGQSQSTLPRPVISSRIDEPAYQ GLQGFTADILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNGGQVSLPGTLD ATSINPRINFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQG QAHVEMTDTRMEGMNFQQMIQQAVERNGGDVKAAENFDNVTRLDRFTTDLTLKDGVVT LNDMQGQSPVLALTGEGMLNLADQTCDTQFDIRVVGGWNGESKLIDFLKETPVPLRVY GNWQQLNYSLQVDQLLRKHLQDEAKRRLNDWAERNKDSRNGKDVKKLLEKM" gene complement(2141634..2142215) /gene="dcd" /locus_tag="b2065" /gene_synonym="dus; ECK2059; JW2050; paxA" /db_xref="EcoGene:EG11418" /db_xref="GeneID:946593" CDS complement(2141634..2142215) /gene="dcd" /locus_tag="b2065" /gene_synonym="dus; ECK2059; JW2050; paxA" /EC_number="3.5.4.13" /function="enzyme; 2'-Deoxyribonucleotide metabolism" /experiment="N-terminus verified by Edman degradation: PMID 1324907" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="deoxycytidine triphosphate deaminase; dCTP deaminase" /protein_id="NP_416569.1" /db_xref="GI:16130005" /db_xref="ASAP:ABE-0006835" /db_xref="UniProtKB/Swiss-Prot:P28248" /db_xref="EcoGene:EG11418" /db_xref="GeneID:946593" /translation="MRLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTF RGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPAD LVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSF EPLSGPAVRPYNRREDAKYRNQQGAVASRIDKD" gene complement(2142307..2142948) /gene="udk" /locus_tag="b2066" /gene_synonym="ECK2060; JW2051" /db_xref="EcoGene:EG11701" /db_xref="GeneID:946597" CDS complement(2142307..2142948) /gene="udk" /locus_tag="b2066" /gene_synonym="ECK2060; JW2051" /EC_number="2.7.1.48" /function="enzyme; Central intermediary metabolism: Nucleotide interconversions" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="uridine/cytidine kinase" /protein_id="NP_416570.2" /db_xref="GI:90111379" /db_xref="ASAP:ABE-0006840" /db_xref="UniProtKB/Swiss-Prot:P0A8F4" /db_xref="EcoGene:EG11701" /db_xref="GeneID:946597" /translation="MTDQSHQCVIIGIAGASASGKSLIASTLYRELREQVGDEHIGVI PEDCYYKDQSHLSMEERVKTNYDHPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTR MKETVTVEPKKVIILEGILLLTDARLRDELNFSIFVDTPLDICLMRRIKRDVNERGRS MDSVMAQYQKTVRPMFLQFIEPSKQYADIIVPRGGKNRIAIDILKAKISQFFE" gene 2143266..2146583 /gene="yegE" /locus_tag="b2067" /gene_synonym="ECK2061; JW2052" /db_xref="EcoGene:EG12396" /db_xref="GeneID:946600" CDS 2143266..2146583 /gene="yegE" /locus_tag="b2067" /gene_synonym="ECK2061; JW2052" /function="putative regulator; Not classified" /GO_process="GO:0006464 - protein modification process" /note="putative sensor-type protein" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase" /protein_id="NP_416571.1" /db_xref="GI:16130007" /db_xref="ASAP:ABE-0006845" /db_xref="UniProtKB/Swiss-Prot:P38097" /db_xref="EcoGene:EG12396" /db_xref="GeneID:946600" /translation="MSKQSQHVLIALPHPLLHLVSLGLVSFIFTLFSLELSQFGTQLA PLWFPTSIMMVAFYRHAGRMWPGIALSCSLGNIAASILLFSTSSLNMTWTTINIVEAV VGAVLLRKLLPWYNPLQNLADWLRLALGSAIVPPLLGGVLVVLLTPGDDPLRAFLIWV LSESIGALALVPLGLLFKPHYLLRHRNPRLLFESLLTLAITLTLSWLSMLYLPWPFTF IIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMSHMPWLPFLLI LLPANIMTMVMYAFRAERKHISESETHFRNAMEYSAIGMALVGTEGQWLQTNKALCQF LGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRNGDVVWALL AVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLMERITLANEAGGIGIWEWELKPN IFSWDKRMFELYEIPPHIKPNWQVWYECVLPEDRQHAEKVIRDSLQSRSPFKLEFRIT VKDGIRHIRALANRVLNKEGEVERLLGINMDMTEVKQLNEALFQEKERLHITLDSIGE AVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLLTVLHITFGDNGPLMENIYSADTS RSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIGSVLVIQDVTESRKMLRQLSYSA SHDALTHLANRASFEKQLRILLQTVNSTHQRHALVFIDLDRFKAVNDSAGHAAGDALL RELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARFIATRIISAVNDYHFIWEGR VHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGRVTVYEPQQAAAHSERAA MSLDEQWRMIKENQLMMLAHGVASPRIPEARNLWLISLKLWSCEGEIIDEQTFRRSFS DPALSHALDRRVFHEFFQQAAKAVASKGISISLPLSVAGLSSATLVNDLLEQLENSPL PPRLLHLIIPAEAILDHAESVQKLRLAGCRIVLSQVGRDLQIFNSLKANMADYLLLDG ELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMDTLSGIGVDLIYGEVIA DAQPLDLLVNSSYFAIN" repeat_region 2146600..2146683 /note="REP147 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(2146692..2147540) /gene="alkA" /locus_tag="b2068" /gene_synonym="aidA; ECK2062; JW2053" /db_xref="EcoGene:EG11222" /db_xref="GeneID:947371" CDS complement(2146692..2147540) /gene="alkA" /locus_tag="b2068" /gene_synonym="aidA; ECK2062; JW2053" /EC_number="3.2.2.21" /function="enzyme; DNA - replication, repair, restriction/modification" /experiment="N-terminus verified by Edman degradation: PMID 6094528" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006281 - DNA repair" /note="3-methyl-adenine DNA glycosylase II, inducible" /codon_start=1 /transl_table=11 /product="3-methyl-adenine DNA glycosylase II" /protein_id="NP_416572.1" /db_xref="GI:16130008" /db_xref="ASAP:ABE-0006848" /db_xref="UniProtKB/Swiss-Prot:P04395" /db_xref="EcoGene:EG11222" /db_xref="GeneID:947371" /translation="MYTLNWQPPYDWSWMLGFLAARAVSSVETVADSYYARSLAVGEY RGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLFDLQCNPQIVNGALGRLGAAR PGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQR LAAADPQALKALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRW TANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEG WQPDEA" gene 2147674..2149026 /gene="yegD" /locus_tag="b2069" /gene_synonym="ECK2063; JW2054" /db_xref="EcoGene:EG12200" /db_xref="GeneID:947234" CDS 2147674..2149026 /gene="yegD" /locus_tag="b2069" /gene_synonym="ECK2063; JW2054" /function="putative regulator; Not classified" /GO_process="GO:0006457 - protein folding" /note="putative heat shock protein" /codon_start=1 /transl_table=11 /product="Hsp70 chaperone family protein" /protein_id="NP_416573.4" /db_xref="GI:90111380" /db_xref="ASAP:ABE-0006856" /db_xref="UniProtKB/Swiss-Prot:P36928" /db_xref="EcoGene:EG12200" /db_xref="GeneID:947234" /translation="MFIGFDYGTANCSVAVMRDGKPHLLKMENDSTLLPSMLCAPTRE AVSEWLYRHHDVPADDDETQALLRRAIRYNREEDIDVTAKSVQFGLSSLAQYIDDPEE VWFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIRQQAQAQLPEAITQAVIGRPINF QGLGGDEANTQAQGILERAAKRAGFRDVVFQYEPVAAGLDYEATLQEEKRVLVVDIGG GTTDCSLLLMGPQWRSRLDREASLLGHSGCRIGGNDLDIALAFKNLMPLLGMGGETEK GIALPILPWWNAVAINDVPAQSDFYSSANGRLLNDLVRDAREPEKVALLQKVWRQRLS YRLVRSAEECKIALSSVAETRASLPFISNELATLISQRGLESALSQPLTRILEQVQLA LDNAQEKPDVIYLTGGSARSPLIKKALAEQLPGIPIAGGDDFGSVTAGLARWAEVVFR " gene complement(2149039..2150985) /gene="yegI" /locus_tag="b2070" /gene_synonym="ECK2064; JW2055" /db_xref="EcoGene:EG14052" /db_xref="GeneID:947159" CDS complement(2149039..2150985) /gene="yegI" /locus_tag="b2070" /gene_synonym="ECK2064; JW2055" /function="putative enzyme; Not classified" /note="putative chaperonin" /codon_start=1 /transl_table=11 /product="protein kinase-related putative non-specific DNA-binding protein" /protein_id="NP_416574.1" /db_xref="GI:16130010" /db_xref="ASAP:ABE-0006858" /db_xref="UniProtKB/Swiss-Prot:P76393" /db_xref="EcoGene:EG14052" /db_xref="GeneID:947159" /translation="MKTNIKVFTSTGELTTLGRELGKGGEGAVYDIEEFVDSVAKIYH TPPPALKQDKLAFMAATADAQLLNYVAWPQATLHGGRGGKVIGFMMPKVSGKEPIHMI YSPAHRRQSYPHCAWDFLLYVARNIASSFATVHEHGHVVGDVNQNSFMVGRDSKVVLI DSDSFQINANGTLHLCEVGVSHFTPPELQTLPSFVGFERTENHDNFGLALLIFHVLFG GRHPYSGVPLISDAGNALETDITHFRYAYASDNQRRGLKPPPRSIPLSMLPSDVEAMF QQAFTESGVATGRPTAKAWVAALDSLRQQLKKCIVSAMHVYPAHLTDCPWCALDNQGV IYFIDLGEEVITTGGNFVLAKVWAMVMASVAPPALQLPLPDHFQPTGRPLPLGLLRRE YIILLEIALSALSLLLCGLQAEPRYIILVPVLAAIWIIGSLTSKAYKAEVQQRREAFN RAKMDYDHLVRQIQQVGGLEGFIAKRTMLEKMKDEILGLPEEEKRALAALHDTARERQ KQKFLEGFFIDVASIPGVGPARKAALRSFGIETAADVTRRGVKQVKGFGDHLTQAVID WKASCERRFVFRPNEAITPADRQAVMAKMTAKRHRLESALTVGATELQRFRLHAPART MPLMEPLRQAAEKLAQAQADLSRC" gene 2151185..2151646 /gene="yegJ" /locus_tag="b2071" /gene_synonym="ECK2065; JW2056" /db_xref="EcoGene:EG14053" /db_xref="GeneID:947201" CDS 2151185..2151646 /gene="yegJ" /locus_tag="b2071" /gene_synonym="ECK2065; JW2056" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416575.1" /db_xref="GI:16130011" /db_xref="ASAP:ABE-0006863" /db_xref="UniProtKB/Swiss-Prot:P76394" /db_xref="EcoGene:EG14053" /db_xref="GeneID:947201" /translation="MKKILLMLSLLFFTTAGFSEVSDTLVTGGYDKQAMSDAIKHARK ETDKFIEVMNKKDADTFAVKAPITDHGRTEHFWLTDVTYSNGMFIGVISNDPGIVTNV EYGQEWKIKKEDISDWMYTRGDKIYGGYTIDPLLVTYPKEEADELRAKLVR" repeat_region 2151674..2151701 /note="REP148 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2151711..2152472) /gene="yegK" /locus_tag="b2072" /gene_synonym="ECK2066; JW2057" /db_xref="EcoGene:EG14054" /db_xref="GeneID:947269" CDS complement(2151711..2152472) /gene="yegK" /locus_tag="b2072" /gene_synonym="ECK2066; JW2057" /codon_start=1 /transl_table=11 /product="ser/thr phosphatase-related protein" /protein_id="NP_416576.1" /db_xref="GI:16130012" /db_xref="ASAP:ABE-0006865" /db_xref="UniProtKB/Swiss-Prot:P76395" /db_xref="EcoGene:EG14054" /db_xref="GeneID:947269" /translation="MSWRLVYASTVGTSHISADLPCQDACQMQIAWLNDQQPLLSVFV ADGAGSVSQGGEGAMLAVNEAMAYMSQKVQGGELGLNDVLATNMVLTIRQRLFAEAEA KELAVRDFACTFLGLISSPDGTLIMQIGDGGVVVDLGHGLQLPLTPMAGEYANMTHFI TDEDAVSRLETFTSTGRAHKVAAFTDGIQRLALNMLDNSPHVPFFTPFFNGLAAATQE QLDLLPELLKQFLSSPAVNERTDDDKTLALALWAE" gene complement(2152469..2153128) /gene="yegL" /locus_tag="b2073" /gene_synonym="ECK2067; JW2058" /db_xref="EcoGene:EG14055" /db_xref="GeneID:946602" CDS complement(2152469..2153128) /gene="yegL" /locus_tag="b2073" /gene_synonym="ECK2067; JW2058" /codon_start=1 /transl_table=11 /product="VMA domain protein" /protein_id="NP_416577.1" /db_xref="GI:16130013" /db_xref="ASAP:ABE-0006867" /db_xref="UniProtKB/Swiss-Prot:P76396" /db_xref="EcoGene:EG14055" /db_xref="GeneID:946602" /translation="MSEQITFATSDFASNPEPRCPCILLLDVSGSMNGRPINELNAGL VTFRDELLADPLALKRVELGIVTFGPVHVEQPFTSAANFFPPILFAQGDTPMGAAITK ALDMVEERKREYRANGISYYRPWIFLITDGAPTDEWQAAANKVFRGEEDKRFAFFSIG VQGADMKTLAQISVRQPLPLQGLQFRELFSWLSSSLRSVSRSTPGTEVVLEAPKGWTS V" gene 2153309..2153451 /gene="sibA" /locus_tag="b4436" /gene_synonym="ECK2068; JWR0241; QUAD1a; ryeC; tp11" /db_xref="EcoGene:EG31151" /db_xref="GeneID:2847673" ncRNA 2153309..2153451 /ncRNA_class="antisense_RNA" /gene="sibA" /locus_tag="b4436" /gene_synonym="ECK2068; JWR0241; QUAD1a; ryeC; tp11" /product="sRNA antisense regulator of toxic IbsA protein" /note="identified in a large scale screen" /db_xref="ASAP:ABE-0047256" /db_xref="EcoGene:EG31151" /db_xref="GeneID:2847673" gene complement(2153349..2153408) /gene="ibsA" /locus_tag="b4667" /gene_synonym="ECK4482" /db_xref="EcoGene:EG14472" /db_xref="GeneID:7751625" CDS complement(2153349..2153408) /gene="ibsA" /locus_tag="b4667" /gene_synonym="ECK4482" /codon_start=1 /transl_table=11 /product="toxic membrane protein" /protein_id="YP_002791247.1" /db_xref="GI:226524729" /db_xref="UniProtKB/Swiss-Prot:C1P607" /db_xref="EcoGene:EG14472" /db_xref="GeneID:7751625" /translation="MMKHVIILVILLVISFQAY" gene 2153644..2153779 /gene="sibB" /locus_tag="b4437" /gene_synonym="ECK2069; JWR0242; QUAD1b; ryeD; tpe60" /db_xref="EcoGene:EG31152" /db_xref="GeneID:2847674" ncRNA 2153644..2153779 /ncRNA_class="antisense_RNA" /gene="sibB" /locus_tag="b4437" /gene_synonym="ECK2069; JWR0242; QUAD1b; ryeD; tpe60" /product="sRNA antisense regulator of toxic IbsB protein" /note="identified in a large scale screen" /db_xref="ASAP:ABE-0047257" /db_xref="EcoGene:EG31152" /db_xref="GeneID:2847674" gene complement(2153681..2153737) /gene="ibsB" /locus_tag="b4668" /gene_synonym="ECK4483" /db_xref="EcoGene:EG14473" /db_xref="GeneID:7751626" CDS complement(2153681..2153737) /gene="ibsB" /locus_tag="b4668" /gene_synonym="ECK4483" /codon_start=1 /transl_table=11 /product="toxic membrane protein" /protein_id="YP_002791248.1" /db_xref="GI:226524730" /db_xref="UniProtKB/Swiss-Prot:C1P608" /db_xref="EcoGene:EG14473" /db_xref="GeneID:7751626" /translation="MMKLLIIVVLLVISFPAY" gene 2154016..2155263 /gene="mdtA" /locus_tag="b2074" /gene_synonym="ECK2070; JW5338; yegM" /db_xref="EcoGene:EG14056" /db_xref="GeneID:946604" CDS 2154016..2155263 /gene="mdtA" /locus_tag="b2074" /gene_synonym="ECK2070; JW5338; yegM" /function="putative membrane; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative membrane protein" /codon_start=1 /transl_table=11 /product="multidrug efflux system, subunit A" /protein_id="NP_416578.2" /db_xref="GI:90111381" /db_xref="ASAP:ABE-0006872" /db_xref="UniProtKB/Swiss-Prot:P76397" /db_xref="EcoGene:EG14056" /db_xref="GeneID:946604" /translation="MKGSYKSRWVIVIVVVIAAIAAFWFWQGRNDSRSAAPGATKQAQ QSPAGGRRGMRSGPLAPVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDGQLIALH FQEGQQVKAGDLLAEIDPSQFKVALAQAQGQLAKDKATLANARRDLARYQQLAKTNLV SRQELDAQQALVSETEGTIKADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQIS SGDTTGIVVITQTHPIDLVFTLPESDIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTL LSLDNQIDATTGTIKVKARFNNQDDALFPNQFVNARMLVDTEQNAVVIPTAALQMGNE GHFVWVLNSENKVSKHLVTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVVE AQSATTPEEKATSREYAKKGARS" gene 2155263..2158385 /gene="mdtB" /locus_tag="b2075" /gene_synonym="ECK2071; JW2060; yegN" /db_xref="EcoGene:EG14057" /db_xref="GeneID:946606" CDS 2155263..2158385 /gene="mdtB" /locus_tag="b2075" /gene_synonym="ECK2071; JW2060; yegN" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="multidrug efflux system, subunit B" /protein_id="NP_416579.1" /db_xref="GI:16130015" /db_xref="ASAP:ABE-0006874" /db_xref="UniProtKB/Swiss-Prot:P76398" /db_xref="EcoGene:EG14057" /db_xref="GeneID:946606" /translation="MQVLPPSSTGGPSRLFIMRPVATTLLMVAILLAGIIGYRALPVS ALPEVDYPTIQVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITL QFQLTLPLDVAEQEVQAAINAATNLLPSDLPNPPVYSKVNPADPPIMTLAVTSTAMPM TQVEDMVETRVAQKISQISGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT GANVNSAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAE NSWLGAWANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTT NIRASVDDTQFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFS INNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFS LIAVLIPLLFMGDIVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQN RFSRASEKMFDRIIAAYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQD NGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQ INLKPLDERDDRVQKVIARLQTAVDKVPGVDLFLQPTQDLTIDTQVSRTQYQFTLQAT SLDALSTWVPQLMEKLQQLPQLSDVSSDWQDKGLVAYVNVDRDSASRLGISMADVDNA LYNAFGQRLISTIYTQANQYRVVLEHNTENTPGLAALDTIRLTSSDGGVVPLSSIAKI EQRFAPLSINHLDQFPVTTISFNVPDNYSLGDAVQAIMDTEKTLNLPVDITTQFQGST LAFQSALGSTVWLIVAAVVAMYIVLGILYESFIHPITILSTLPTAGVGALLALLIAGS ELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPREAIYQACLLRFRPILMTT LAALLGALPLMLSTGVGAELRRPLGIGMVGGLIVSQVLTLFTTPVIYLLFDRLALWTK SRFARHEEEA" gene 2158386..2161463 /gene="mdtC" /locus_tag="b2076" /gene_synonym="ECK2072; JW2061; yegO" /db_xref="EcoGene:EG14058" /db_xref="GeneID:946608" CDS 2158386..2161463 /gene="mdtC" /locus_tag="b2076" /gene_synonym="ECK2072; JW2061; yegO" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="multidrug efflux system, subunit C" /protein_id="NP_416580.1" /db_xref="GI:16130016" /db_xref="ASAP:ABE-0006877" /db_xref="UniProtKB/Swiss-Prot:P76399" /db_xref="EcoGene:EG14058" /db_xref="GeneID:946608" /translation="MKFFALFIYRPVATILLSVAITLCGILGFRMLPVAPLPQVDFPV IIVSASLPGASPETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDIN GAARDVQAAINAAQSLLPSGMPSRPTYRKANPSDAPIMILTLTSDTYSQGELYDFAST QLAPTISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAVSNANVRKPQG ALEDGTHRWQIQTNDELKTAAEYQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGMTN AKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV EQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMAL TIATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLL LMGGLPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRML VALQQGYGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQA DQSISFQAMRGKLQDFMKIIRDDPAVDNVTGFTGGSRVNSGMMFITLKPRDERSETAQ QIIDRLRVKLAKEPGANLFLMAVQDIRVGGRQSNASYQYTLLSDDLAALREWEPKIRK KLATLPELADVNSDQQDNGAEMNLVYDRDTMARLGIDVQAANSLLNNAFGQRQISTIY QPMNQYKVVMEVDPRYTQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGL SAASTISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILI IAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLI GIVKKNAIMMVDFALEAQRHGNLTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSG GDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSRKPKQTVTE" gene 2161464..2162879 /gene="iceT" /locus_tag="b2077" /gene_synonym="ECK2073; JW2062; mdtD; yegB" /db_xref="EcoGene:EG12136" /db_xref="GeneID:946601" CDS 2161464..2162879 /gene="iceT" /locus_tag="b2077" /gene_synonym="ECK2073; JW2062; mdtD; yegB" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative citrate/iron-citrate/zinc-citrate efflux transporter" /protein_id="NP_416581.1" /db_xref="GI:16130017" /db_xref="ASAP:ABE-0006879" /db_xref="UniProtKB/Swiss-Prot:P36554" /db_xref="EcoGene:EG12136" /db_xref="GeneID:946601" /translation="MTDLPDSTRWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESP LHMHMVIVSYVLTVAVMLPASGWLADKVGVRNIFFTAIVLFTLGSLFCALSGTLNELL LARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY ASWHWIFLINIPVGIIGAIATLLLMPNYTMQTRRFDLSGFLLLAVGMAVLTLALDGSK GTGLSPLTIAGLVAVGVVALVLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIG SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATT LGLSLVTLLFMTTALLGWYYVLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNS LLSMIMQLSMSIGVTIAGLLLGLFGSQHVSVDSGTTQTVFMYTWLSMALIIALPAFIF ARVPNDTHQNVAISRRKRSAQ" gene 2162876..2164279 /gene="baeS" /locus_tag="b2078" /gene_synonym="ECK2074; JW2063" /db_xref="EcoGene:EG11617" /db_xref="GeneID:946611" CDS 2162876..2164279 /gene="baeS" /locus_tag="b2078" /gene_synonym="ECK2074; JW2063" /function="enzyme; RNA synthesis, modification, DNA transcription" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006464 - protein modification process" /note="sensor protein (for BaeR)" /codon_start=1 /transl_table=11 /product="sensory histidine kinase in two-component regulatory system with BaeR" /protein_id="NP_416582.1" /db_xref="GI:16130018" /db_xref="ASAP:ABE-0006882" /db_xref="UniProtKB/Swiss-Prot:P30847" /db_xref="EcoGene:EG11617" /db_xref="GeneID:946611" /translation="MKFWRPGITGKLFLAIFATCIVLLISMHWAVRISFERGFIDYIK HGNEQRLQLLSDALGEQYAQHGNWRFLRNNDRFVFQILRSFEHDNSEDKPGPGMPPHG WRTQFWVVDQNNKVLVGPRAPIPPDGTRRPILVNGAEVGAVIASPVERLTRNTDINFD KQQRQTSWLIVALATLLAALATFLLARGLLAPVKRLVDGTHKLAAGDFTTRVTPTSED ELGKLAQDFNQLASTLEKNQQMRRDFMADISHELRTPLAVLRGELEAIQDGVRKFTPE TVASLQAEVGTLTKLVDDLHQLSMSDEGALAYQKAPVDLIPLLEVAGGAFRERFASRG LKLQFSLPDSITVFGDRDRLMQLFNNLLENSLRYTDSGGSLQISAGQRDKTVRLTFAD SAPGVSDDQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGG VSITVELPLERDLQREV" gene 2164276..2164998 /gene="baeR" /locus_tag="b2079" /gene_synonym="ECK2075; JW2064" /db_xref="EcoGene:EG11618" /db_xref="GeneID:946605" CDS 2164276..2164998 /gene="baeR" /locus_tag="b2079" /gene_synonym="ECK2075; JW2064" /function="regulator; RNA synthesis, modification, DNA transcription" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="transcriptional response regulatory protein (sensor BaeS)" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with BaeS" /protein_id="NP_416583.1" /db_xref="GI:16130019" /db_xref="ASAP:ABE-0006884" /db_xref="UniProtKB/Swiss-Prot:P69228" /db_xref="EcoGene:EG11618" /db_xref="GeneID:946605" /translation="MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGD QVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEI GADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLD LTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAE QSFIRAVYGVGYRWEADACRIV" repeat_region 2165017..2165096 /note="REP149 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene 2165189..2165521 /gene="yegP" /locus_tag="b2080" /gene_synonym="ECK2076; JW5339" /db_xref="EcoGene:EG14059" /db_xref="GeneID:947095" CDS 2165189..2165521 /gene="yegP" /locus_tag="b2080" /gene_synonym="ECK2076; JW5339" /codon_start=1 /transl_table=11 /product="UPF0339 family protein" /protein_id="NP_416584.4" /db_xref="GI:90111382" /db_xref="ASAP:ABE-0006888" /db_xref="UniProtKB/Swiss-Prot:P76402" /db_xref="EcoGene:EG14059" /db_xref="GeneID:947095" /translation="MAGWFELSKSSDNQFRFVLKAGNGETILTSELYTSKTSAEKGIA SVRSNSPQEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGT SQTVKDNT" gene 2165668..2167029 /gene="yegQ" /locus_tag="b2081" /gene_synonym="ECK2077; JW2066" /db_xref="EcoGene:EG14060" /db_xref="GeneID:946609" CDS 2165668..2167029 /gene="yegQ" /locus_tag="b2081" /gene_synonym="ECK2077; JW2066" /codon_start=1 /transl_table=11 /product="putative peptidase" /protein_id="NP_416585.1" /db_xref="GI:16130021" /db_xref="ASAP:ABE-0006891" /db_xref="UniProtKB/Swiss-Prot:P76403" /db_xref="EcoGene:EG14060" /db_xref="GeneID:946609" /translation="MFKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFN HENLQLGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLKPVVEMGPDALIMSDPGLIM LVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEIEEIRNQVPDME IEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYNVQEGKEDDVGNIVHKY EPIPVQNVEPTLGIGAPTDKVFMIEEAQRPGEYMTAFEDEHGTYIMNSKDLRAIAHVE RLTKMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDTSLLETLEGLAHRGY TEGFLRRHTHDDYQNYEYGYSVSDRQQFVGEFTGERKGDLAAVAVKNKFSVGDSLELM TPQGNINFTLEHMENAKGEAMPIAPGDGYTVWLPVPQDLELNYALLMRNFSGETTRNP HGK" gene 2167114..2167200 /gene="cyaR" /locus_tag="b4438" /gene_synonym="ECK2078; JWR0243; ryeE" /db_xref="EcoGene:EG31153" /db_xref="GeneID:2847769" ncRNA 2167114..2167200 /ncRNA_class="antisense_RNA" /gene="cyaR" /locus_tag="b4438" /gene_synonym="ECK2078; JWR0243; ryeE" /product="sRNA antisense regulator of ompX mRNA instability, Hfq-dependent, cAMP-induced" /note="identified in a large scale screen" /db_xref="ASAP:ABE-0047258" /db_xref="EcoGene:EG31153" /db_xref="GeneID:2847769" misc_feature complement(2167198..2167826) /note="cryptic prophage PR-X" gene complement(2167302..2167520) /gene="ogrK" /locus_tag="b2082" /gene_synonym="ECK2079; JW2067" /db_xref="EcoGene:EG12425" /db_xref="GeneID:945404" CDS complement(2167302..2167520) /gene="ogrK" /locus_tag="b2082" /gene_synonym="ECK2079; JW2067" /function="Phage or Prophage Related" /note="prophage P2 ogr protein" /codon_start=1 /transl_table=11 /product="orphan Ogr protein, positive regulator of P2 growth" /protein_id="NP_416586.1" /db_xref="GI:16130022" /db_xref="ASAP:ABE-0006893" /db_xref="UniProtKB/Swiss-Prot:P37057" /db_xref="EcoGene:EG12425" /db_xref="GeneID:945404" /translation="MFHCPLCQHAAHARTSRYITDTTKERYHQCQNVNCSATFITYES VQRYIVKPGEVHVVRPHPLPSGQQIMWM" gene complement(2167602..2167814) /gene="yegZ" /locus_tag="b2083" /gene_synonym="ECK2080; JW5886" /pseudo /db_xref="EcoGene:EG14309" /db_xref="GeneID:949050" CDS complement(2167602..2167814) /gene="yegZ" /locus_tag="b2083" /gene_synonym="ECK2080; JW5886" /note="pseudogene, gpD phage P2-like protein D" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0006896" /db_xref="EcoGene:EG14309" /db_xref="GeneID:949050" gene complement(2167989..2168306) /gene="yegR" /locus_tag="b2085" /gene_synonym="ECK2081; JW5837" /db_xref="EcoGene:EG14061" /db_xref="GeneID:946613" CDS complement(2167989..2168306) /gene="yegR" /locus_tag="b2085" /gene_synonym="ECK2081; JW5837" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416589.2" /db_xref="GI:90111383" /db_xref="ASAP:ABE-0006907" /db_xref="UniProtKB/Swiss-Prot:P76406" /db_xref="EcoGene:EG14061" /db_xref="GeneID:946613" /translation="MKKIAAISLISIFIMSGCAVHNDETSIGKFGLAYKSNIQRKLDN QYYTEAEASLARGRISGAENIVKNDATHFCVTQGKKMQIVELKTEGVGLHGVARLTFK CGE" gene 2168712..2169611 /gene="yegS" /locus_tag="b2086" /gene_synonym="ECK2082; JW2070" /db_xref="EcoGene:EG14367" /db_xref="GeneID:946626" CDS 2168712..2169611 /gene="yegS" /locus_tag="b2086" /gene_synonym="ECK2082; JW2070" /codon_start=1 /transl_table=11 /product="phosphatidylglycerol kinase, metal-dependent" /protein_id="NP_416590.1" /db_xref="GI:16130026" /db_xref="ASAP:ABE-0006911" /db_xref="UniProtKB/Swiss-Prot:P76407" /db_xref="EcoGene:EG14367" /db_xref="GeneID:946626" /translation="MAEFPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKG DAARYVEEARKFGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFATS VGIPEALDKALKLAIAGDAIAIDMAQVNKQTCFINMATGGFGTRITTETPEKLKAALG SVSYIIHGLMRMDTLQPDRCEIRGENFHWQGDALVIGIGNGRQAGGGQQLCPNALIND GLLQLRIFTGDEILPALVSTLKSDEDNPNIIEGASSWFDIQAPHDITFNLDGEPLSGQ NFHIEILPAALRCRLPPDCPLLR" repeat_region 2169650..2169683 /note="REP150 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(join(2169693..2170167,2171429..2171727)) /gene="gatR" /locus_tag="b4498" /gene_synonym="ECK2083; JW2074; JW5340" /pseudo /db_xref="EcoGene:EG12162" /db_xref="GeneID:2847672" CDS complement(join(2169693..2170167,2171429..2171727)) /gene="gatR" /locus_tag="b4498" /gene_synonym="ECK2083; JW2074; JW5340" /note="pseudogene, repressor for gat operon; interrupted by IS3; split galactitol utilization operon repressor, fragment 2; split galactitol utilization operon repressor, interrupted" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0006914" /db_xref="ASAP:ABE-0006921" /db_xref="ASAP:ABE-0285099" /db_xref="UniProtKB/Swiss-Prot:P36930" /db_xref="EcoGene:EG12162" /db_xref="GeneID:2847672" mobile_element 2170171..2171428 /mobile_element_type="insertion sequence:IS3E" gene 2170236..2170535 /gene="insE1" /locus_tag="b2088" /gene_synonym="ECK0298" /db_xref="EcoGene:EG40005" /db_xref="GeneID:946616" CDS 2170236..2170535 /gene="insE1" /locus_tag="b2088" /gene_synonym="ECK0298" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS3 transposase A" /protein_id="NP_416592.2" /db_xref="GI:226524731" /db_xref="ASAP:ABE-0006917" /db_xref="UniProtKB/Swiss-Prot:P0CF70" /db_xref="EcoGene:EG40005" /db_xref="GeneID:946616" /translation="MTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYES QLYNWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATYFAKRLK" gene 2170532..2171398 /gene="insF1" /locus_tag="b2089" /gene_synonym="ECK0299" /db_xref="EcoGene:EG40006" /db_xref="GeneID:946629" CDS 2170532..2171398 /gene="insF1" /locus_tag="b2089" /gene_synonym="ECK0299" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS3 transposase B" /protein_id="NP_416593.1" /db_xref="GI:16130028" /db_xref="ASAP:ABE-0006919" /db_xref="UniProtKB/Swiss-Prot:P0CF83" /db_xref="EcoGene:EG40006" /db_xref="GeneID:946629" /translation="MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQ FRQHCDSVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKF SPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVI GWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSM SAKGCCYDNACVESFFHSLKVECIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGG LSPEQFENKNLA" gene complement(2171833..2172873) /gene="gatD" /locus_tag="b2091" /gene_synonym="ECK2084; JW2075" /db_xref="EcoGene:EG12417" /db_xref="GeneID:946598" CDS complement(2171833..2172873) /gene="gatD" /locus_tag="b2091" /gene_synonym="ECK2084; JW2075" /EC_number="1.1.1.251" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="galactitol-1-phosphate dehydrogenase" /codon_start=1 /transl_table=11 /product="galactitol-1-phosphate dehydrogenase, Zn-dependent and NAD(P)-binding" /protein_id="NP_416594.1" /db_xref="GI:16130029" /db_xref="ASAP:ABE-0006924" /db_xref="UniProtKB/Swiss-Prot:P0A9S3" /db_xref="EcoGene:EG12417" /db_xref="GeneID:946598" /translation="MKSVVNDTDGIVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPR IFKNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQ CAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCE NKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAP QMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKI LRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIA RNAMPGKVLLIP" gene complement(2172921..2174278) /gene="gatC" /locus_tag="b2092" /gene_synonym="ECK2085; JW2076" /pseudo /db_xref="EcoGene:EG12416" /db_xref="GeneID:946603" CDS complement(join(2172921..2173362,2173365..2174278)) /gene="gatC" /locus_tag="b2092" /gene_synonym="ECK2085; JW2076" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="pseudogene, galactitol-specific enzyme IIC component of PTS;transport; Transport of small molecules: Carbohydrates, organic acids, alcohols; PTS system galactitol-specific enzyme IIC" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0006928" /db_xref="UniProtKB/Swiss-Prot:P69831" /db_xref="EcoGene:EG12416" /db_xref="GeneID:946603" gene complement(2174282..2174566) /gene="gatB" /locus_tag="b2093" /gene_synonym="ECK2086; JW2077" /db_xref="EcoGene:EG12415" /db_xref="GeneID:946610" CDS complement(2174282..2174566) /gene="gatB" /locus_tag="b2093" /gene_synonym="ECK2086; JW2077" /EC_number="2.7.1.69" /function="enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols" /experiment="N-terminus verified by Edman degradation: PMID 9868784" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="galactitol-specific enzyme IIB of phosphotransferase system" /codon_start=1 /transl_table=11 /product="galactitol-specific enzyme IIB component of PTS" /protein_id="NP_416596.1" /db_xref="GI:16130031" /db_xref="ASAP:ABE-0006930" /db_xref="UniProtKB/Swiss-Prot:P37188" /db_xref="EcoGene:EG12415" /db_xref="GeneID:946610" /translation="MKRKIIVACGGAVATSTMAAEEIKELCQNHNIPVELIQCRVNEI ETYMDGVHLICTTAKVDRSFGDIPLVHGMPFISGIGIEALQNKILTILQG" gene complement(2174597..2175049) /gene="gatA" /locus_tag="b2094" /gene_synonym="ECK2087; JW2078; JW2081" /db_xref="EcoGene:EG12414" /db_xref="GeneID:946633" CDS complement(2174597..2175049) /gene="gatA" /locus_tag="b2094" /gene_synonym="ECK2087; JW2078; JW2081" /EC_number="2.7.1.69" /function="enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="galactitol-specific enzyme IIA of phosphotransferase system" /codon_start=1 /transl_table=11 /product="galactitol-specific enzyme IIA component of PTS" /protein_id="NP_416597.1" /db_xref="GI:16130032" /db_xref="ASAP:ABE-0006932" /db_xref="UniProtKB/Swiss-Prot:P69828" /db_xref="EcoGene:EG12414" /db_xref="GeneID:946633" /translation="MTNLFVRSGISFVDRSEVLTHIGNEMLAKGVVHDTWPQALIARE AEFPTGIMLEQHAIAIPHCEAIHAKSSAIYLLRPTNKVHFQQADDDNDVAVSLVIALI VENPQQQLKLLRCLFGKLQQPDIVETLITLPETQLKEYFTKYVLDSDE" gene complement(2175059..2176321) /gene="gatZ" /locus_tag="b2095" /gene_synonym="ECK2088; JW2082" /db_xref="EcoGene:EG12418" /db_xref="GeneID:946641" CDS complement(2175059..2176321) /gene="gatZ" /locus_tag="b2095" /gene_synonym="ECK2088; JW2082" /EC_number="4.1.2.40" /function="putative enzyme; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 17895580" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="putative tagatose 6-phosphate kinase 1" /codon_start=1 /transl_table=11 /product="D-tagatose 1,6-bisphosphate aldolase 2, subunit" /protein_id="NP_416598.1" /db_xref="GI:16130033" /db_xref="ASAP:ABE-0006934" /db_xref="UniProtKB/Swiss-Prot:P0C8J8" /db_xref="EcoGene:EG12418" /db_xref="GeneID:946641" /translation="MKTLIARHKAGEHIGICSVCSAHPLVIEAALAFDRNSTRKVLIE ATSNQVNQFGGYTGMTPADFREFVFTIADKVGFARERIILGGDHLGPNCWQQENADAA MEKSVELVKEYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAESVATDCQ REQLSYVIGTEVPVPGGEASAIQSVHITHVEDAANTLRTHQKAFIARGLTEALTRVIA IVVQPGVEFDHSNIIHYQPQEAQPLAQWIENTRMVYEAHSTDYQTRTAYWELVRDHFA ILKVGPALTFALREAIFALAQIEQELIAPENRSGCLAVIEEVMLDEPQYWKKYYRTGF NDSLLDIRYSLSDRIRYYWPHSRIKNSVETMMVNLEGVDIPLGMISQYLPKQFERIQS GELSAIPHQLIMDKIYDVLRAYRYGCAE" gene complement(2176350..2177204) /gene="gatY" /locus_tag="b2096" /gene_synonym="ECK2089; JW5343; yegF" /db_xref="EcoGene:EG12419" /db_xref="GeneID:946636" CDS complement(2176350..2177204) /gene="gatY" /locus_tag="b2096" /gene_synonym="ECK2089; JW5343; yegF" /EC_number="4.1.2.40" /function="enzyme; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 10094700,17895580" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="tagatose-bisphosphate aldolase 1" /codon_start=1 /transl_table=11 /product="D-tagatose 1,6-bisphosphate aldolase 2, catalytic subunit" /protein_id="NP_416599.2" /db_xref="GI:90111384" /db_xref="ASAP:ABE-0006938" /db_xref="UniProtKB/Swiss-Prot:P0C8J6" /db_xref="EcoGene:EG12419" /db_xref="GeneID:946636" /translation="MYVVSTKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAANLHAP VIIAGTPGTFTHAGTENLLALVSAMAKQYHHPLAIHLDHHTKFDDIAQKVRSGVRSVM IDASHLPFAQNISRVKEVVDFCHRFDVSVEAELGQLGGQEDDVQVNEADALYTNPAQA REFAEATGIDSLAVAIGTAHGMYASAPALDFSRLENIRQWVNLPLVLHGASGLSTKDI QQTIKLGICKINVATELKNAFSQALKNYLTEHPEATDPRDYLQSAKSAMRDVVSKVIA DCGCEGRA" repeat_region 2177408..2177484 /note="REP151 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(2177512..2178564) /gene="fbaB" /locus_tag="b2097" /gene_synonym="dhnA; ECK2090; JW5344" /db_xref="EcoGene:EG14062" /db_xref="GeneID:946632" CDS complement(2177512..2178564) /gene="fbaB" /locus_tag="b2097" /gene_synonym="dhnA; ECK2090; JW5344" /EC_number="4.1.2.13" /GO_process="GO:0006096 - glycolysis" /codon_start=1 /transl_table=11 /product="fructose-bisphosphate aldolase class I" /protein_id="NP_416600.4" /db_xref="GI:90111385" /db_xref="ASAP:ABE-0006941" /db_xref="UniProtKB/Swiss-Prot:P0A991" /db_xref="EcoGene:EG14062" /db_xref="GeneID:946632" /translation="MTDIAQLLGKDADNLLQHRCMTIPSDQLYLPGHDYVDRVMIDNN RPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAI EAGCNCVASTYGVLASVSRRYAHRIPFLVKLNHNETLSYPNTYDQTLYASVEQAFNMG AVAVGATIYFGSEESRRQIEEISAAFERAHELGMVTVLWAYLRNSAFKKDGVDYHVSA DLTGQANHLAATIGADIVKQKMAENNGGYKAINYGYTDDRVYSKLTSENPIDLVRYQL ANCYMGRAGLINSGGAAGGETDLSDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKL INAVQDVYLDSKITIA" gene 2178821..2180098 /gene="yegT" /locus_tag="b2098" /gene_synonym="ECK2091; JW2085" /db_xref="EcoGene:EG14063" /db_xref="GeneID:946638" CDS 2178821..2180098 /gene="yegT" /locus_tag="b2098" /gene_synonym="ECK2091; JW2085" /function="transport; Transport of small molecules: Nucleosides, purines, pyrimidines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative nucleoside permease protein" /codon_start=1 /transl_table=11 /product="nucleoside transporter, low affinity" /protein_id="NP_416601.1" /db_xref="GI:16130036" /db_xref="ASAP:ABE-0006946" /db_xref="UniProtKB/Swiss-Prot:P76417" /db_xref="EcoGene:EG14063" /db_xref="GeneID:946638" /translation="MKTTAKLSFMMFVEWFIWGAWFVPLWLWLSKSGFSAGEIGWSYA CTAIAAILSPILVGSITDRFFSAQKVLAVLMFAGALLMYFAAQQTTFAGFFPLLLAYS LTYMPTIALTNSIAFANVPDVERDFPRIRVMGTIGWIASGLACGFLPQILGYADISPT NIPLLITAGSSALLGVFAFFLPDTPPKSTGKMDIKVMLGLDALILLRDKNFLVFFFCS FLFAMPLAFYYIFANGYLTEVGMKNATGWMTLGQFSEIFFMLALPFFTKRFGIKKVLL LGLVTAAIRYGFFIYGSADEYFTYALLFLGILLHGVSYDFYYVTAYIYVDKKAPVHMR TAAQGLITLCCQGFGSLLGYRLGGVMMEKMFAYQEPVNGLTFNWSGMWTFGAVMIAII AVLFMIFFRESDNEITAIKVDDRDIALTQGEVK" gene 2180095..2181099 /gene="yegU" /locus_tag="b2099" /gene_synonym="ECK2092; JW2086" /db_xref="EcoGene:EG14064" /db_xref="GeneID:946630" CDS 2180095..2181099 /gene="yegU" /locus_tag="b2099" /gene_synonym="ECK2092; JW2086" /codon_start=1 /transl_table=11 /product="ADP-ribosylglycohydrolase family protein" /protein_id="NP_416602.1" /db_xref="GI:16130037" /db_xref="ASAP:ABE-0006948" /db_xref="UniProtKB/Swiss-Prot:P76418" /db_xref="EcoGene:EG14064" /db_xref="GeneID:946630" /translation="MKTERILGALYGQALGDAMGMPSELWPRSRVKAHFGWIDRFLPG PKENNAACYFNRAEFTDDTSMALCLADALLEREGKIDPDLIGRNILDWALRFDAFNKN VLGPTSKIALNAIRDGKPVAELENNGVTNGAAMRVSPLGCLLPARDVDSFIDDVALAS SPTHKSDLAVAGAVVIAWAISRAIDGESWSAIVDSLPSIARHAQQKRITTFSASLAAR LEIALKIVRNADGTESASEQLYQVVGAGTSTIESVPCAIALVELAQTDPNRCAVLCAN LGGDTDTIGAMATAICGALHGVNAIDPALKAELDAVNQLDFNRYATALAKYRQQREAV " gene 2181096..2182061 /gene="yegV" /locus_tag="b2100" /gene_synonym="ECK2093; JW2087" /db_xref="EcoGene:EG14065" /db_xref="GeneID:946637" CDS 2181096..2182061 /gene="yegV" /locus_tag="b2100" /gene_synonym="ECK2093; JW2087" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative kinase" /protein_id="NP_416603.1" /db_xref="GI:16130038" /db_xref="ASAP:ABE-0006950" /db_xref="UniProtKB/Swiss-Prot:P76419" /db_xref="EcoGene:EG14065" /db_xref="GeneID:946637" /translation="MSGARLHTLLPELTTRQSVMVVGAAVIDVIADAYALPWRGCDIE LKQQSVNVGGCALNIAVALKRLGIEAGNALPLGQGVWAEMIRNRMAKEGLISLIDNAE GDNGWCLALVEPDGERTFMSFSGVENQWNRQWLARLTVAPGSLLYFSGYQLASPCGEL LVEWLEELQDVTPFIDFGPRIGDIPDALLARIMACRPLVSLNRQEAEIAAERFALSAE ITTLGKQWQEKFAAPLIVRLDKEGAWYFSNDASGCIPAFPTQVVDTIGAGDSHAGGVL AGLASGLPLADAVLLGNAVASWVVGHRGGDCAPTREELLLAHKNV" gene complement(2182035..2182781) /gene="yegW" /locus_tag="b2101" /gene_synonym="ECK2094; JW2088" /db_xref="EcoGene:EG14066" /db_xref="GeneID:946639" CDS complement(2182035..2182781) /gene="yegW" /locus_tag="b2101" /gene_synonym="ECK2094; JW2088" /function="putative regulator; Not classified" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator" /protein_id="NP_416604.1" /db_xref="GI:16130039" /db_xref="ASAP:ABE-0006952" /db_xref="UniProtKB/Swiss-Prot:P0ACM5" /db_xref="EcoGene:EG14066" /db_xref="GeneID:946639" /translation="MEQAHTQLIAQLNERILAADNTPLYIKFAETVKNAVRSGVLEHG NILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFS QQVVLRGKKPDTLWVNKRVVKCPEEVAQQLAVEAGSDVFLLKRIRYVDEEAVSIEESW VPAHLIHDVDAIGISLYDYFRSQHIYPQRTRSRVSARMPDAEFQSHIQLDSKIPVLVI KQVALDQQQRPIEYSISHCRSDLYVFVCEE" gene complement(2182833..2183651) /gene="yegX" /locus_tag="b2102" /gene_synonym="ECK2095; JW5345" /db_xref="EcoGene:EG14067" /db_xref="GeneID:945543" CDS complement(2182833..2183651) /gene="yegX" /locus_tag="b2102" /gene_synonym="ECK2095; JW5345" /codon_start=1 /transl_table=11 /product="putative family 25 glycosyl hydrolase" /protein_id="NP_416605.2" /db_xref="GI:90111386" /db_xref="ASAP:ABE-0006955" /db_xref="UniProtKB/Swiss-Prot:P76421" /db_xref="EcoGene:EG14067" /db_xref="GeneID:945543" /translation="MQLRITSRKKLTSLLCALGLISIVAIYPRQTVNFFYSTAVQITD YIHFYGYRPVKSFAIRIPASYTIHGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKAT EGEKLVDPYFSRNWQLSRENGLLRGAYHYFSPSVSASVQARLFLQTVDFSQGDFPAVL DVEERGKLSAKELRKRVSQWLKMVEKSTGKKPIIYSGAVFYHTNLAGYFNEYPWWVAH YYQRRPDNDGMAWRFWQHSDRGQVDGINGPVDFNVFNGTVEELQAFVDGIKETP" gene complement(2183716..2184516) /gene="thiD" /locus_tag="b2103" /gene_synonym="ECK2096; JW2090; thiA; thiJ; thiN" /db_xref="EcoGene:EG14068" /db_xref="GeneID:946459" CDS complement(2183716..2184516) /gene="thiD" /locus_tag="b2103" /gene_synonym="ECK2096; JW2090; thiA; thiJ; thiN" /EC_number="2.7.1.49" /EC_number="2.7.4.7" /function="enzyme; Biosynthesis of cofactors, carriers: Thiamine" /GO_process="GO:0009228 - thiamin biosynthetic process" /note="phosphomethylpyrimidine kinase" /codon_start=1 /transl_table=11 /product="hydroxy-methylpyrimidine kinase and hydroxy-phosphomethylpyrimidine kinase" /protein_id="NP_416606.1" /db_xref="GI:16130041" /db_xref="ASAP:ABE-0006958" /db_xref="UniProtKB/Swiss-Prot:P76422" /db_xref="EcoGene:EG14068" /db_xref="GeneID:946459" /translation="MKRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQ NTRGVQSVYRIEPDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRYQIQNV VLDTVMLAKSGDPLLSPSAVATLRSRLLPQVSLITPNLPEAAALLDAPHARTEQEMLE QGRSLLAMGCGAVLMKGGHLDDEQSPDWLFTREGEQRFTAPRIMTKNTHGTGCTLSAA LAALRPRHTNWADTVQEAKSWLSSALAQADTLEVGHGIGPVHHFHAWW" gene complement(2184513..2185301) /gene="thiM" /locus_tag="b2104" /gene_synonym="ECK2097; JW2091" /db_xref="EcoGene:EG14069" /db_xref="GeneID:945142" CDS complement(2184513..2185301) /gene="thiM" /locus_tag="b2104" /gene_synonym="ECK2097; JW2091" /EC_number="2.7.1.50" /function="enzyme; Biosynthesis of cofactors, carriers: Thiamine" /GO_process="GO:0009228 - thiamin biosynthetic process" /codon_start=1 /transl_table=11 /product="hydoxyethylthiazole kinase" /protein_id="NP_416607.1" /db_xref="GI:16130042" /db_xref="ASAP:ABE-0006960" /db_xref="UniProtKB/Swiss-Prot:P76423" /db_xref="EcoGene:EG14069" /db_xref="GeneID:945142" /translation="MQVDLLGSAQSAHALHLFHQHSPLVHCMTNDVVQTFTANTLLAL GASPAMVIETEEASQFAAIASALLINVGTLTQPRAQAMRAAVEQAKSSQTPWTLDPVA VGALDYRRHFCHELLSFKPAAIRGNASEIMALAGIANGGRGVDTTDAAANAIPAAQTL ARETGAIVVVTGEMDYVTDGHRIIGIHGGDPLMTKVVGTGCALSAVVAACCALPGDTL ENVASACHWMKQAGERAVARSEGPGSFVPHFLDALWQLTQEVQA" gene complement(2185524..2185796) /gene="rcnR" /locus_tag="b2105" /gene_synonym="ECK2098; JW2092; yohL" /db_xref="EcoGene:EG14070" /db_xref="GeneID:947114" CDS complement(2185524..2185796) /gene="rcnR" /locus_tag="b2105" /gene_synonym="ECK2098; JW2092; yohL" /codon_start=1 /transl_table=11 /product="transcriptional repressor of rcnA" /protein_id="NP_416608.1" /db_xref="GI:16130043" /db_xref="ASAP:ABE-0006964" /db_xref="UniProtKB/Swiss-Prot:P64530" /db_xref="EcoGene:EG14070" /db_xref="GeneID:947114" /translation="MSHTIRDKQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAA IRGAVNGLMREVIKGHLTEHIVHQGDELKREEDLDVVLKVLDSYIK" gene 2185917..2186741 /gene="rcnA" /locus_tag="b2106" /gene_synonym="ECK2099; JW2093; yohM" /db_xref="EcoGene:EG14071" /db_xref="GeneID:949078" CDS 2185917..2186741 /gene="rcnA" /locus_tag="b2106" /gene_synonym="ECK2099; JW2093; yohM" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="membrane protein conferring nickel and cobalt resistance" /protein_id="NP_416609.1" /db_xref="GI:16130044" /db_xref="ASAP:ABE-0006968" /db_xref="UniProtKB/Swiss-Prot:P76425" /db_xref="EcoGene:EG14071" /db_xref="GeneID:949078" /translation="MTEFTTLLQQGNAWFFIPSAILLGALHGLEPGHSKTMMAAFIIA IKGTIKQAVMLGLAATISHTAVVWLIAFGGMVISKRFTAQSAEPWLQLISAVIIISTA FWMFWRTWRGERNWLENMHGHDYEHHHHDHEHHHDHGHHHHHEHGEYQDAHARAHAND IKRRFDGREVTNWQILLFGLTGGLIPCPAAITVLLICIQLKALTLGATLVVSFSIGLA LTLVTVGVGAAISVQQVAKRWSGFNTLAKRAPYFSSLLIGLVGVYMGVHGFMGIMR" gene 2186960..2187298 /gene="rcnB" /locus_tag="b2107" /gene_synonym="ECK2100; JW5346; yohN" /db_xref="EcoGene:EG14072" /db_xref="GeneID:949080" CDS 2186960..2187298 /gene="rcnB" /locus_tag="b2107" /gene_synonym="ECK2100; JW5346; yohN" /codon_start=1 /transl_table=11 /product="periplasmic modulator of Ni and Co efflux" /protein_id="NP_416610.4" /db_xref="GI:90111387" /db_xref="ASAP:ABE-0006970" /db_xref="UniProtKB/Swiss-Prot:P64534" /db_xref="EcoGene:EG14072" /db_xref="GeneID:949080" /translation="MTIKNKMLLGALLLVTSAAWAAPATAGSTNTSGISKYELSSFIA DFKHFKPGDTVPEMYRTDEYNIKQWQLRNLPAPDAGTHWTYMGGAYVLISDTDGKIIK AYDGEIFYHR" gene complement(2187380..2188414) /gene="yehA" /locus_tag="b2108" /gene_synonym="ECK2101; JW2095" /db_xref="EcoGene:EG11987" /db_xref="GeneID:946642" CDS complement(2187380..2188414) /gene="yehA" /locus_tag="b2108" /gene_synonym="ECK2101; JW2095" /function="putative structural component; Surface structures" /note="putative type-1 fimbrial protein" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_416611.1" /db_xref="GI:16130046" /db_xref="ASAP:ABE-0006972" /db_xref="UniProtKB/Swiss-Prot:P33340" /db_xref="EcoGene:EG11987" /db_xref="GeneID:946642" /translation="MEIRIMLFILMMMVMPVSYAACYSELSVQHNLVVQGDFALTQTQ MATYEHNFNDSSCVSTNTITPMSPSDIIVGLYNDTIKLNLHFEWTNKNNITLSNNQTS FTSGYSVTVTPAASNAKVNVSAGGGGSVMINGVATLSSASSSTRGSAAVQFLLCLLGG KSWDACVNSYRNALAQNAGVYSFNLTLSYNPITTTCKPDDLLITLDSIPVSQLPATGN KATINSKQGDIILRCKNLLGQQNQTSRKMQVYLSSSDLLTNSNTILKGAEDNGVGFIL ESNGSPVTLLNITNSSKGYTNLKEVAAKSKLTDTTVSIPITASYYVYDTNKVKSGALE ATALINVKYD" gene complement(2188430..2190910) /gene="yehB" /locus_tag="b2109" /gene_synonym="ECK2102; JW2096" /db_xref="EcoGene:EG11988" /db_xref="GeneID:946617" CDS complement(2188430..2190910) /gene="yehB" /locus_tag="b2109" /gene_synonym="ECK2102; JW2096" /function="putative membrane; Not classified" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_416612.1" /db_xref="GI:16130047" /db_xref="ASAP:ABE-0006974" /db_xref="UniProtKB/Swiss-Prot:P33341" /db_xref="EcoGene:EG11988" /db_xref="GeneID:946617" /translation="MLRMTPLASAIVALLLGIEAYAAEETFDTHFMIGGMKDQQVANI RLDDNQPLPGQYDIDIYVNKQWRGKYEIIVKDNPQETCLSREVIKRLGINSDNFASGK QCLTFEQLVQGGSYTWDIGVFRLDFSVPQAWVEELESGYVPPENWERGINAFYTSYYL SQYYSDYKASGNNKSTYVRFNSGLNLLGWQLHSDASFSKTNNNPGVWKSNTLYLERGF AQLLGTLRVGDMYTSSDIFDSVRFRGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVT IEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQ PGVSKYDLAAGRSHIEGASKQSDFVQAGYQYGFNNLLTLYGGSMVANNYYAFTLGAGW NTRIGAISVDATKSHSKQDNGDVFDGQSYQIAYNKFVSQTSTRFGLAAWRYSSRDYRT FNDHVWANNKDNYRRDENDVYDIADYYQNDFGRKNSFSANMSQSLPEGWGSVSLSTLW RDYWGRSGSSKDYQLSYSNNLRRISYTLAASQAYDENHHEEKRFNIFISIPFDWGDDV STPRRQIYMSNSTTFDDQGFASNNTGLSGTVGSRDQFNYGVNLSHQHQGNETTAGANL TWNAPVATVNGSYSQSSTYRQAGASVSGGIVAWSGGVNLANRLSETFAVMNAPGIKDA YVNGQKYRTTNRNGVVIYDGMTPYRENHLMLDVSQSDSEAELRGNRKIAAPYRGAVVL VNFDTDQRKPWFIKALRADGQSLTFGYEVNDIHGHNIGVVGQGSQLFIRTNEVPPSVN VAIDKQQGLSCTITFGKEIDESRNYICQ" gene complement(2190926..2191645) /gene="yehC" /locus_tag="b2110" /gene_synonym="ECK2103; JW2097" /db_xref="EcoGene:EG11989" /db_xref="GeneID:946621" CDS complement(2190926..2191645) /gene="yehC" /locus_tag="b2110" /gene_synonym="ECK2103; JW2097" /function="putative factor; Surface structures" /GO_process="GO:0006457 - protein folding" /note="putative chaperone" /codon_start=1 /transl_table=11 /product="putative periplasmic pilin chaperone" /protein_id="NP_416613.1" /db_xref="GI:16130048" /db_xref="ASAP:ABE-0006978" /db_xref="UniProtKB/Swiss-Prot:P33342" /db_xref="EcoGene:EG11989" /db_xref="GeneID:946621" /translation="MAAIPWRPFNLRGIKMKGLLSLLIFSMVLPAHAGIVIYGTRIIY PAENKEVMVQLMNQGNRSSLLQAWIDDGDTSLPPEKIQVPFMLTPPVAKIGANSGQQV KIKIMPNKLPTNKESIFYLNVLDIPPNSPEQEGKNALKFAMQNRIKLFYRPAGIAPVN KATFKKLLVNRSGNGLVIKNDSANWVTISDVKANNVKVNYETIMIAPLESQSVNVKSN NANNWHLTIIDDHGNYISDKI" gene complement(2191680..2192222) /gene="yehD" /locus_tag="b2111" /gene_synonym="ECK2104; JW2098" /db_xref="EcoGene:EG11990" /db_xref="GeneID:946619" CDS complement(2191680..2192222) /gene="yehD" /locus_tag="b2111" /gene_synonym="ECK2104; JW2098" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="putative fimbrial-like protein" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_416614.1" /db_xref="GI:16130049" /db_xref="ASAP:ABE-0006980" /db_xref="UniProtKB/Swiss-Prot:P33343" /db_xref="EcoGene:EG11990" /db_xref="GeneID:946619" /translation="MKRSIIAAAVFSSFFMSAGVFAADVDTGTLTIKGNIAESPCKFE AGGDSVSINMPTVPTSVFEGKAKYSTYDDAVGVTSSMLKISCPKEVAGVKLSLITNDK ITGNDKAIASSNDTVGYYLYLGDNSDVLDVSAPFNIESYKTAEGQYAIPFKAKYLKLT DNSVQSGDVLSSLVMRVAQD" gene complement(2192515..2192796) /gene="yehE" /locus_tag="b2112" /gene_synonym="ECK2105; JW2099" /db_xref="EcoGene:EG11991" /db_xref="GeneID:946615" CDS complement(2192515..2192796) /gene="yehE" /locus_tag="b2112" /gene_synonym="ECK2105; JW2099" /codon_start=1 /transl_table=11 /product="DUF2574 family protein" /protein_id="NP_416615.1" /db_xref="GI:16130050" /db_xref="ASAP:ABE-0006984" /db_xref="UniProtKB/Swiss-Prot:P33344" /db_xref="EcoGene:EG11991" /db_xref="GeneID:946615" /translation="MNKYWLSGIIFLAYGLASPAFSSETATLAINGRISPPTCSMAMV NGQPQQHCGQLTYNVDTRHLFSSPVKGVTTEVVVAGSDSKRRIVLNRYD" gene complement(2193059..2194168) /gene="mrp" /locus_tag="b2113" /gene_synonym="apbC; ECK2106; JW2100" /db_xref="EcoGene:EG10611" /db_xref="GeneID:946627" CDS complement(2193059..2194168) /gene="mrp" /locus_tag="b2113" /gene_synonym="apbC; ECK2106; JW2100" /function="putative enzyme; Not classified" /note="putative ATPase" /codon_start=1 /transl_table=11 /product="antiporter inner membrane protein" /protein_id="NP_416616.4" /db_xref="GI:90111388" /db_xref="ASAP:ABE-0006987" /db_xref="UniProtKB/Swiss-Prot:P0AF08" /db_xref="EcoGene:EG10611" /db_xref="GeneID:946627" /translation="MNEQSQAKSPEALRAMVAGTLANFQHPTLKHNLTTLKALHHVAW MDDTLHVELVMPFVWHSAFEELKEQCSAELLRITGAKAIDWKLSHNIATLKRVKNQPG INGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQ RPTSPDGTHMAPIMSHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDY LVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVE NMSVHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDKGTPTVISRP ESEFTAIYRQLADRVAAQLYWQGEVIPGEISFRAV" gene 2194300..2196333 /gene="metG" /locus_tag="b2114" /gene_synonym="ECK2107; JW2101" /db_xref="EcoGene:EG10586" /db_xref="GeneID:946643" CDS 2194300..2196333 /gene="metG" /locus_tag="b2114" /gene_synonym="ECK2107; JW2101" /EC_number="6.1.1.10" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="methionine tRNA synthetase" /codon_start=1 /transl_table=11 /product="methionyl-tRNA synthetase" /protein_id="NP_416617.1" /db_xref="GI:16130052" /db_xref="ASAP:ABE-0006991" /db_xref="UniProtKB/Swiss-Prot:P00959" /db_xref="EcoGene:EG10586" /db_xref="GeneID:946643" /translation="MTQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGH EVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEE NRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCE VCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANK MQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSV SFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPSNLFVHGYVTVNGAKM SKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVN LASRNAGFINKRFDGVLASELADPQLYKTFTDAAEVIGEAWESREFGKAVREIMALAD LANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN TELTWDGIQQPLLGHKVNPFKALYNRIDMRQVEALVEASKEEVKAAAAPVTGPLADDP IQETITFDDFAKVDLRVALIENAEFVEGSDKLLRLTLDLGGEKRNVFSGIRSAYPDPQ ALIGRHTIMVANLAPRKMRFGISEGMVMAAGPGGKDIFLLSPDAGAKPGHQVK" gene 2196474..2200269 /gene="yehH" /locus_tag="b4499" /gene_synonym="dinO; ECK2108; JW2102; JW5915; JW5916; molR; sosF; yehF; yehG" /pseudo /db_xref="EcoGene:EG11992" /db_xref="GeneID:2847726" CDS join(2196474..2199320,2199322..2200269) /gene="yehH" /locus_tag="b4499" /gene_synonym="dinO; ECK2108; JW2102; JW5915; JW5916; molR; sosF; yehF; yehG" /note="DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N-terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0006997" /db_xref="ASAP:ABE-0006999" /db_xref="ASAP:ABE-0007001" /db_xref="ASAP:ABE-0285100" /db_xref="UniProtKB/Swiss-Prot:P33345" /db_xref="EcoGene:EG11992" /db_xref="GeneID:2847726" gene 2200279..2203911 /gene="yehI" /locus_tag="b2118" /gene_synonym="ECK2109; JW2105" /db_xref="EcoGene:EG11995" /db_xref="GeneID:946649" CDS 2200279..2203911 /gene="yehI" /locus_tag="b2118" /gene_synonym="ECK2109; JW2105" /function="putative regulator; Not classified" /note="putative regulator" /codon_start=1 /transl_table=11 /product="DUF4132 domain-containing protein" /protein_id="NP_416621.1" /db_xref="GI:16130056" /db_xref="ASAP:ABE-0007003" /db_xref="UniProtKB/Swiss-Prot:P33346" /db_xref="EcoGene:EG11995" /db_xref="GeneID:946649" /translation="MDKELPWLADNAQLELKYKKGKTPLSHRRWPGEPVSVITGSLIQ TLGDELLQKAEKKKNIVWRYENFSLEWQSAITQAINLIGEHKPSIPARTMAALACIAQ NDSQQLLDEIVQQEGLEYATEVVIARQFIARCYESDPLVVTLQYQDEDYGYGYRSETY NEFDLRLRKHLSLAEESCWQRCADKLIAALPGINKVRRPFIALILPEKPEIANELVGL ECPRTHFHSKEWLKVVANDPTAVRKLEHYWSQDIFSDREASYMSHENHFGYAACAALL REQGLAAIPRLAMYAHKEDCGSLLVQINHPQVIRTLLLVADKNKPSLQRVAKYHKNFP HATLAALAELLALTEPPARPGYPIIEDKKLPAQQKARDEYWRTLLQTLMASQPQLAAE VMPWLSTQPQSVLKSYLSAPPKPVIDGTDNSNLPEILVSPPWRSKKKMTAPRLDLAPL ELTPQVYWQPGEQERLAATEPARYFSTESLAQRMEQKSGRVVLQELGFGDDVWLFLNY ILPGKLDAARNSLFVQWHYYQGRVEEILNGWNSPEAQLAEQALRSGHIEALINIWEND NYSHYRPEKSVWNLYLLAQLPREMALTFWLRINEKKHLFAGEDYFLSILGLDALPGLL LAFSHRPKETFPLILNFGATELALPVAHVWRRFAAQRDLARQWILQWPEHTASALIPL VFTKPSDNSEAALLALRLLYEQGHGELLQTVANRWQRTDVWSALEQLLKQGPMDIYPA RIPKAPDFWHPQMWSRPRLITNNQTVTNDALEIIGEMLRFTQGGRFYSGLEQLKTFCQ PQTLAAFAWDLFTAWQQAGAPAKDNWAFLALSLFGDESTARDLTTQILAWPQEGKSAR AVSGLNILTLMNNDMALIQLHHISQRAKSRPLRDNAAEFLQVVAENRGLSQEELADRL VPTLGLDDPQALSFDFGPRQFTVRFDENLNPVIFDQQNVRQKSVPRLRADDDQLKAPE ALARLKGLKKDATQVSKNLLPRLETALRTTRRWSLADFHSLFVNHPFTRLVTQRLIWG VYPANEPRCLLKAFRVAAEGEFCNAQDEPIDLPADALIGIAHPLEMTAEMRSEFAQLF ADYEIMPPFRQLSRRTVLLTPDESTSNSLTRWEGKSATVGQLMGMRYKGWESGYEDAF VYNLGEYRLVLKFSPGFNHYNVDSKALMSFRSLRVYRDNKSVTFAELDVFDLSEALSA PDVIFH" gene 2203972..2204289 /gene="yehK" /locus_tag="b4541" /gene_synonym="ECK2110; JW2106" /db_xref="EcoGene:EG11997" /db_xref="GeneID:4056035" CDS 2203972..2204289 /gene="yehK" /locus_tag="b4541" /gene_synonym="ECK2110; JW2106" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_588459.1" /db_xref="GI:94541136" /db_xref="ASAP:ABE-0285062" /db_xref="UniProtKB/Swiss-Prot:P33347" /db_xref="EcoGene:EG11997" /db_xref="GeneID:4056035" /translation="MIVQKELVAIYDYEVPVPEDPFSFRLEIHKCSELFTGSVYRLER FRLRPTFHQRDREDADPLINDALIYIRDECIDERKLRGESPETVIAIFNRELQNIFNQ EIE" gene 2204596..2205684 /gene="yehL" /locus_tag="b2119" /gene_synonym="ECK2111; JW5349" /db_xref="EcoGene:EG11998" /db_xref="GeneID:946656" CDS 2204596..2205684 /gene="yehL" /locus_tag="b2119" /gene_synonym="ECK2111; JW5349" /GO_function="GO:0004009 - ATP-binding cassette (ABC) transporter activity" /codon_start=1 /transl_table=11 /product="putative hexameric AAA+ MoxR family ATPase" /protein_id="NP_416623.2" /db_xref="GI:90111389" /db_xref="ASAP:ABE-0007006" /db_xref="UniProtKB/Swiss-Prot:P33348" /db_xref="EcoGene:EG11998" /db_xref="GeneID:946656" /translation="MSPQNNHLQRPPAAVLYADELAKLKQNDNAPCPPGWQLSLPAAR AFILGDEAQNISRKVVISPSAVERMLVTLATGRGLMLVGEPGTAKSLLSELLATAISG DAGLTIQGGASTTEDQIKYGWNYALLINHGPSTEALVPAPLYQGMRDGKIVRFEEITR TPLEVQDCLLGMLSDRVMTGPELTGEASQLYAREGFNIIATANTRDRGVNEMSAALKR RFDFETVFPIMDFAQELELVASASARLLAHSGIPHKVPDAVLELLVRTFRDLRANGEK KTSMDTLTAIMSTAEAVNVAHAVGVRAWFLANRAGEPADLVECIAGTIVKDNEEDRAR LRRYFEQRVATHKEAHWQAYYQARHRLP" gene 2205695..2207974 /gene="yehM" /locus_tag="b2120" /gene_synonym="ECK2112; JW2108; yehN; yehO" /db_xref="EcoGene:EG11999" /db_xref="GeneID:946651" CDS 2205695..2207974 /gene="yehM" /locus_tag="b2120" /gene_synonym="ECK2112; JW2108; yehN; yehO" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416624.1" /db_xref="GI:16130058" /db_xref="ASAP:ABE-0007008" /db_xref="UniProtKB/Swiss-Prot:P33349" /db_xref="EcoGene:EG11999" /db_xref="GeneID:946651" /translation="MSEPLIVGIRHHSPACARLVKSLIESQRPRYVLIEGPADFNDRV DELFLAHQLPVAIYSYCQYQDGAAPGRGAWTPFAEFSPEWQALQAARRIQAQTYFIDL PCWAQSEEEDDSPDTQDESQALLLRATRMDNSDTLWDHLFEDESQQTALPSALAHYFA QLRGDASGDALNRQREAFMARWIGWAMQQNNGDVLVVCGGWHAPALAKMWRECPQKIN KPELPSLADAVTGCYLTPYSEKRLDVLAGYLSGMPAPVWQNWCWQWGLQKAGEQLLKT ILTRLRQHKLPASTADMAAAHLHAMALAQLRGHTLPLRTDWLDAIAGSLIKEALNAPL PWSYRGVIHPDTDPILLTLIDTLAGDGFGKLAPSTPQPPLPKDVTCELERTAISLPAE LTLNRFTPDGLAQSQVLHRLAILEIPGIVRQQGSTLTLAGNGEERWKLTRPLSQHAAL IEAACFGATLQEAARNKLEADMLDAGGIGSITTCLSQAALAGLASFSQQLLEQLTLLI AQENQFAEMGQALEVLYALWRLDEISGMQGAQILQTTLCATIDRTLWLCESNGRPDEK EFHAHLHSWQALCHILRDLHSGVNLPGVSLSAAVALLERRSQAIHAPALDRGAALGAL MRLEHPNASAEAALTMLAQLSPAQSGEALHGLLALARHQLACQPAFIAGFSSHLNQLS EADFINALPDLRAAMAWLPPRERGTLAHQVLEHYQLAQLPVSALQMPLHCPPQAIAHH QQLEQQALASLQNWGVFHV" gene 2207967..2209103 /gene="yehP" /locus_tag="b2121" /gene_synonym="ECK2113; JW5350" /db_xref="EcoGene:EG12002" /db_xref="GeneID:946652" CDS 2207967..2209103 /gene="yehP" /locus_tag="b2121" /gene_synonym="ECK2113; JW5350" /codon_start=1 /transl_table=11 /product="VMA domain putative YehL ATPase stimulator" /protein_id="NP_416625.1" /db_xref="GI:16130059" /db_xref="ASAP:ABE-0007013" /db_xref="UniProtKB/Swiss-Prot:P33352" /db_xref="EcoGene:EG12002" /db_xref="GeneID:946652" /translation="MSELNDLLTTRELQRWRLILGEAAETTLCGLDDNARQIDHALEW LYGRDPERLQRGERSGGLGGSNLTTPEWINSIHTLFPQQVIERLESDAVLRYGIEDVV TNLDVLERMQPSESLLRAVLHTKHLMNPEVLAAARRIVCQVVEEIMARLAKEVRQAFS GVRDRRRRSFIPLARNFDFKSTLRANLQHWHPQHGKLYIESPRFNSRIKRQSEQWQLV LLVDQSGSMVDSVIHSAVMAACLWQLPGIRTHLVAFDTSVVDLTADVADPVELLMKVQ LGGGTNIASAVEYGRQLIEQPAKSVIILVSDFYEGGSSSLLTHQVKKCVQSGIKVLGL AALDSTATPCYDRDTAQALVNVGAQIAAMTPGELASWLAENLQS" gene 2209100..2211100 /gene="yehQ" /locus_tag="b2122" /gene_synonym="ECK2114; JW2110" /pseudo /db_xref="EcoGene:EG12003" /db_xref="GeneID:946654" CDS 2209100..2211100 /gene="yehQ" /locus_tag="b2122" /gene_synonym="ECK2114; JW2110" /note="pseudogene" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0007015" /db_xref="UniProtKB/Swiss-Prot:P33353" /db_xref="EcoGene:EG12003" /db_xref="GeneID:946654" gene 2211225..2211686 /gene="yehR" /locus_tag="b2123" /gene_synonym="ECK2115; JW5351" /db_xref="EcoGene:EG12004" /db_xref="GeneID:949023" CDS 2211225..2211686 /gene="yehR" /locus_tag="b2123" /gene_synonym="ECK2115; JW5351" /function="enzyme; Transport of small molecules: Cations" /codon_start=1 /transl_table=11 /product="lipoprotein, DUF1307 family" /protein_id="NP_416627.2" /db_xref="GI:90111391" /db_xref="ASAP:ABE-0007018" /db_xref="UniProtKB/Swiss-Prot:P33354" /db_xref="EcoGene:EG12004" /db_xref="GeneID:949023" /translation="MKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLNGTEIAIT YVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKLTYTDTYA QENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVK" gene complement(2211726..2212196) /gene="yehS" /locus_tag="b2124" /gene_synonym="ECK2116; JW2112" /db_xref="EcoGene:EG12005" /db_xref="GeneID:949026" CDS complement(2211726..2212196) /gene="yehS" /locus_tag="b2124" /gene_synonym="ECK2116; JW2112" /codon_start=1 /transl_table=11 /product="DUF1456 family protein" /protein_id="NP_416628.1" /db_xref="GI:16130062" /db_xref="ASAP:ABE-0007021" /db_xref="UniProtKB/Swiss-Prot:P33355" /db_xref="EcoGene:EG12005" /db_xref="GeneID:949026" /translation="MLSNDILRSVRYILKANNNDLVRILALGNVEATAEQIAVWLRKE DEEGFQRCPDIVLSSFLNGLIYEKRGKDESAPALEPERRINNNIVLKKLRIAFSLKTD DILAILTEQQFRVSMPEITAMMRAPDHKNFRECGDQFLRYFLRGLAARQHVKKG" gene complement(2212243..2212962) /gene="yehT" /locus_tag="b2125" /gene_synonym="ECK2117; JW5352" /db_xref="EcoGene:EG12006" /db_xref="GeneID:949024" CDS complement(2212243..2212962) /gene="yehT" /locus_tag="b2125" /gene_synonym="ECK2117; JW5352" /codon_start=1 /transl_table=11 /product="putative response regulator in two-component system withYehU" /protein_id="NP_416629.4" /db_xref="GI:90111392" /db_xref="ASAP:ABE-0007023" /db_xref="UniProtKB/Swiss-Prot:P0AFT5" /db_xref="EcoGene:EG12006" /db_xref="GeneID:949024" /translation="MIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVH KLRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKP IDEARLEKTLARLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRM SGVYVTSHEGKEGFTELTLRTLESRTPLLRCHRQYLVNLAHLQEIRLEDNGQAELILR NGLTVPVSRRYLKSLKEAIGL" gene complement(2212959..2214644) /gene="yehU" /locus_tag="b2126" /gene_synonym="ECK2118; JW5353" /db_xref="EcoGene:EG12007" /db_xref="GeneID:949027" CDS complement(2212959..2214644) /gene="yehU" /locus_tag="b2126" /gene_synonym="ECK2118; JW5353" /function="putative regulator; Not classified" /GO_process="GO:0006464 - protein modification process" /note="putative 2-component sensor protein" /codon_start=1 /transl_table=11 /product="inner membrane putative sensory kinase in two-component system with YehT" /protein_id="NP_416630.1" /db_xref="GI:16130064" /db_xref="ASAP:ABE-0007027" /db_xref="UniProtKB/Swiss-Prot:P0AD14" /db_xref="EcoGene:EG12007" /db_xref="GeneID:949027" /translation="MYDFNLVLLLLQQMCVFLVIAWLMSKTPLFIPLMQVTVRLPHKF LCYIVFSIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSM GGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVAEMVQMLIILA IARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAAS TEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPISST YTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNR LFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIK AVIRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQV NIAIPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNA GLYQPVTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRITLRLPWRDEA" gene 2214866..2215597 /gene="mlrA" /locus_tag="b2127" /gene_synonym="ECK2119; JW2115; yehV" /db_xref="EcoGene:EG12008" /db_xref="GeneID:949029" CDS 2214866..2215597 /gene="mlrA" /locus_tag="b2127" /gene_synonym="ECK2119; JW2115; yehV" /function="regulator; Not classified" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional activator of csgD and csgBA" /protein_id="NP_416631.1" /db_xref="GI:16130065" /db_xref="ASAP:ABE-0007030" /db_xref="UniProtKB/Swiss-Prot:P33358" /db_xref="EcoGene:EG12008" /db_xref="GeneID:949029" /translation="MALYTIGEVALLCDINPVTLRAWQRRYGLLKPQRTDGGHRLFND ADIDRIREIKRWIDNGVQVSKVKMLLSNENVDVQNGWRDQQETLLTYLQSGNLHSLRT WIKERGQDYPAQTLTTHLFIPLRRRLQCQQPTLQALLAILDGVLINYIAICLASARKK QGKDALVVGWNIQDTTRLWLEGWIASQQGWRIDVLAHSLNQLRPELFEGRTLLVWCGE NRTSAQQQQLTSWQEQGHDIFPLGI" gene 2215657..2215764 /gene="yohO" /locus_tag="b4542" /gene_synonym="ECK2120; JW5354" /db_xref="EcoGene:EG14426" /db_xref="GeneID:1450279" CDS 2215657..2215764 /gene="yohO" /locus_tag="b4542" /gene_synonym="ECK2120; JW5354" /codon_start=1 /transl_table=11 /product="putative membrane protein" /protein_id="YP_588460.1" /db_xref="GI:94541117" /db_xref="ASAP:ABE-0285063" /db_xref="UniProtKB/Swiss-Prot:Q2EES6" /db_xref="EcoGene:EG14426" /db_xref="GeneID:1450279" /translation="MRIAKIGVIALFLFMALGGIGGVMLAGYTFILRAG" gene complement(2215745..2216476) /gene="yehW" /locus_tag="b2128" /gene_synonym="ECK2121; JW2116" /db_xref="EcoGene:EG12009" /db_xref="GeneID:949028" CDS complement(2215745..2216476) /gene="yehW" /locus_tag="b2128" /gene_synonym="ECK2121; JW2116" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport system permease protein" /codon_start=1 /transl_table=11 /product="putative ABC transporter permease" /protein_id="NP_416632.1" /db_xref="GI:16130066" /db_xref="ASAP:ABE-0007032" /db_xref="UniProtKB/Swiss-Prot:P33359" /db_xref="EcoGene:EG12009" /db_xref="GeneID:949028" /translation="MKMLRDPLFWLIALFVALIFWLPYSQPLFAALFPQLPRPVYQQE SFAALALAHFWLVGISSLFAVIIGTGAGIAVTRPWGAEFRPLVETIAAVGQTFPPVAV LAIAVPVIGFGLQPAIIALILYGVLPVLQATLAGLGAIDASVTEVAKGMGMSRGQRVR KVELPLAAPVILAGVRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGAL LVALAAIIADRLFERLVQALSQHAK" gene complement(2216481..2217407) /gene="yehX" /locus_tag="b2129" /gene_synonym="ECK2122; JW2117" /db_xref="EcoGene:EG12010" /db_xref="GeneID:946659" CDS complement(2216481..2217407) /gene="yehX" /locus_tag="b2129" /gene_synonym="ECK2122; JW2117" /function="putative transport; Not classified" /GO_component="GO:0005737 - cytoplasm" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="putative ABC transporter ATPase" /protein_id="NP_416633.1" /db_xref="GI:16130067" /db_xref="ASAP:ABE-0007034" /db_xref="UniProtKB/Swiss-Prot:P33360" /db_xref="EcoGene:EG12010" /db_xref="GeneID:946659" /translation="MIEFSHVSKLFGAQKAVNDLNLNFQEGSFSVLIGTSGSGKSTTL KMINRLVEHDSGEIRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWSVAQNIATVPQL QKWSRARIDDRIDELMALLGLESNLRERYPHQLSGGQQQRVGVARALAADPQVLLMDE PFGALDPVTRGALQQEMTRIHRLLGRTIVLVTHDIDEALRLAEHLVLMDHGEVVQQGN PLTMLTRPANDFVRQFFGRSELGVRLLSLRSVADYVRREERADGEALAEEMTLRDALS LFVARGCEVLPVVNMQGQPCGTLHFQDLLVEA" gene complement(2217400..2218557) /gene="yehY" /locus_tag="b2130" /gene_synonym="ECK2123; JW2118" /db_xref="EcoGene:EG12011" /db_xref="GeneID:946660" CDS complement(2217400..2218557) /gene="yehY" /locus_tag="b2130" /gene_synonym="ECK2123; JW2118" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport system permease protein" /codon_start=1 /transl_table=11 /product="putative ABC transporter permease" /protein_id="NP_416634.1" /db_xref="GI:16130068" /db_xref="ASAP:ABE-0007038" /db_xref="UniProtKB/Swiss-Prot:P33361" /db_xref="EcoGene:EG12011" /db_xref="GeneID:946660" /translation="MTYFRINPVLALLLLLTAIAAALPFISYAPNRLVSGEGRHLWQL WPQTIWMLVGVGCAWLTACFIPGKKGSICALILAQFVFVLLVWGAGKAATQLAQNGSA LARTSLGSGFWLAAALALLACSDAIRRISTHPLWRWLLHMQIAIIPLWLLYSGTLNDL SLMKEYANRQDVFDDALAQHLTLLFGAVLPALVIGVPLGIWCYFSTARQGAIFSLLNV IQTVPSVALFGLLIAPLAALVTAFPWLGTLGIAGTGMTPALIALVLYALLPLVRGVVV GLNQIPRDVLESARAMGMSGAQRFLHVQLPLALPVFLRSLRVVMVQTVGMAVIAALIG AGGFGALVFQGLLSSAIDLVLLGVIPVIVLAVLTDALFDLLIALLKVKRND" gene complement(2218564..2219481) /gene="osmF" /locus_tag="b2131" /gene_synonym="ECK2124; JW2119; yehZ" /db_xref="EcoGene:EG12012" /db_xref="GeneID:946681" CDS complement(2218564..2219481) /gene="osmF" /locus_tag="b2131" /gene_synonym="ECK2124; JW2119; yehZ" /function="putative transport; Not classified" /GO_component="GO:0042597 - periplasmic space" /note="putative transport system permease protein" /codon_start=1 /transl_table=11 /product="putative ABC transporter periplasmic binding protein" /protein_id="NP_416635.1" /db_xref="GI:16130069" /db_xref="ASAP:ABE-0007040" /db_xref="UniProtKB/Swiss-Prot:P33362" /db_xref="EcoGene:EG12012" /db_xref="GeneID:946681" /translation="MPLLKLWAGSLVMLAAVSLPLQAASPVKVGSKIDTEGALLGNII LQVLESHGVPTVNKVQLGTTPVVRGAITSGELDIYPEYTGNGAFFFKDENDAAWKNAQ QGYEKVKKLDSEHNKLIWLTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTF KLAASAEFIERADALPAFEKAYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMA YGTDGPVAALGLQTLSDPQGVQPIYAPAPVVRESVLREYPQMAQWLQPVFASLDAKTL QQLNASIAVEGLDAKKVAADYLKQKGWTK" repeat_region 2219625..2219658 /note="REP152 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2219692..2221989) /gene="bglX" /locus_tag="b2132" /gene_synonym="ECK2125; glh; JW2120; yohA" /db_xref="EcoGene:EG12013" /db_xref="GeneID:946682" CDS complement(2219692..2221989) /gene="bglX" /locus_tag="b2132" /gene_synonym="ECK2125; glh; JW2120; yohA" /EC_number="3.2.1.21" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="beta-D-glucoside glucohydrolase, periplasmic" /protein_id="NP_416636.1" /db_xref="GI:16130070" /db_xref="ASAP:ABE-0007043" /db_xref="UniProtKB/Swiss-Prot:P33363" /db_xref="EcoGene:EG12013" /db_xref="GeneID:946682" /translation="MKWLCSVGIAVSLALQPALADDLFGNHPLTPEARDAFVTELLKK MTVDEKIGQLRLISVGPDNPKEAIREMIKDGQVGAIFNTVTRQDIRAMQDQVMELSRL KIPLFFAYDVLHGQRTVFPISLGLASSFNLDAVKTVGRVSAYEAADDGLNMTWAPMVD VSRDPRWGRASEGFGEDTYLTSTMGKTMVEAMQGKSPADRYSVMTSVKHFAAYGAVEG GKEYNTVDMSPQRLFNDYMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRD QWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKSGINMSMSDEYYSKYLPGLIKS GKVTMAELDDAARHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVAR ESLVLLKNRLETLPLKKSATIAVVGPLADSKRDVMGSWSAAGVADQSVTVLTGIKNAV GENGKVLYAKGANVTSDKGIIDFLNQYEEAVKVDPRSPQEMIDEAVQTAKQSDVVVAV VGEAQGMAHEASSRTDITIPQSQRDLIAALKATGKPLVLVLMNGRPLALVKEDQQADA ILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYSHLNTGRPYNADKP NKYTSRYFDEANGALYPFGYGLSYTTFTVSDVKLSAPTMKRDGKVTASVQVTNTGKRE GATVVQMYLQDVTASMSRPVKQLKGFEKITLKPGETQTVSFPIDIEALKFWNQQMKYD AEPGKFNVFIGTDSARVKKGEFELL" gene 2222185..2223900 /gene="dld" /locus_tag="b2133" /gene_synonym="ECK2126; JW2121" /db_xref="EcoGene:EG10231" /db_xref="GeneID:946653" CDS 2222185..2223900 /gene="dld" /locus_tag="b2133" /gene_synonym="ECK2126; JW2121" /EC_number="1.1.1.28" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009060 - aerobic respiration" /note="D-lactate dehydrogenase, FAD protein, NADH independent" /codon_start=1 /transl_table=11 /product="D-lactate dehydrogenase, FAD-binding, NADH independent" /protein_id="NP_416637.1" /db_xref="GI:16130071" /db_xref="ASAP:ABE-0007048" /db_xref="UniProtKB/Swiss-Prot:P06149" /db_xref="EcoGene:EG10231" /db_xref="GeneID:946653" /translation="MSSMTTTDNKAFLNELARLVGSSHLLTDPAKTARYRKGFRSGQG DALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPNGNDYDRDVVIISTL RLDKLHVLGKGEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSG GSLVQRGPAYTEMSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRH DGRHAHDYDYVHRVRDIEADTPARYNADPDRLFESSGCAGKLAVFAVRLDTFEAEKNQ QVFYIGTNQPEVLTEIRRHILANFENLPVAGEYMHRDIYDIAEKYGKDTFLMIDKLGT DKMPFFFNLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHL LLKMAGDGVGEAKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSD EVEDILALDIALRRNDTEWYEHLPPEIDSQLVHKLYYGHFMCYVFHQDYIVKKGVDVH ALKEQMLELLQQRGAQYPAEHNVGHLYKAPETLQKFYRENDPTNSMNPGIGKTSKRKN WQEVE" repeat_region 2223905..2223932 /note="REP153 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2223938..2224870) /gene="pbpG" /locus_tag="b2134" /gene_synonym="ECK2127; JW5355; psv; yohB" /db_xref="EcoGene:EG12015" /db_xref="GeneID:946662" CDS complement(2223938..2224870) /gene="pbpG" /locus_tag="b2134" /gene_synonym="ECK2127; JW5355; psv; yohB" /function="putative enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0009274 - peptidoglycan-based cell wall; GO:0042597 - periplasmic space" /GO_process="GO:0009252 - peptidoglycan biosynthetic process; GO:0042493 - response to drug" /note="penicillin-binding protein 7" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine endopeptidase" /protein_id="NP_416638.4" /db_xref="GI:162135905" /db_xref="ASAP:ABE-0007050" /db_xref="UniProtKB/Swiss-Prot:P0AFI5" /db_xref="EcoGene:EG12015" /db_xref="GeneID:946662" /translation="MPKFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAM IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPEMKGVY SRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTR FVEPTGLSVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNH LVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW IETGKVMPVPAAALSYKKQKAAQMAAAGQTAQND" gene complement(2225044..2225631) /gene="yohC" /locus_tag="b2135" /gene_synonym="ECK2128; JW5356" /db_xref="EcoGene:EG12016" /db_xref="GeneID:946666" CDS complement(2225044..2225631) /gene="yohC" /locus_tag="b2135" /gene_synonym="ECK2128; JW5356" /codon_start=1 /transl_table=11 /product="Yip1 family inner membrane protein" /protein_id="NP_416639.2" /db_xref="GI:90111394" /db_xref="ASAP:ABE-0007053" /db_xref="UniProtKB/Swiss-Prot:P0AD17" /db_xref="EcoGene:EG12016" /db_xref="GeneID:946666" /translation="MSHVWGLFSHPDREMQVINRENETISHHYTHHVLLMAAIPVICA FIGTTQIGWNFGDGTILKLSWFTGLALAVLFYGVMLAGVAVMGRVIWWMARNYPQRPS LAHCMVFAGYVATPLFLSGLVALYPLVWLCALVGTVALFYTGYLLYLGIPSFLNINKE EGLSFSSSTLAIGVLVLEVLLALTVILWGYGYRLF" gene 2225801..2226379 /gene="yohD" /locus_tag="b2136" /gene_synonym="ECK2129; JW2124" /db_xref="EcoGene:EG12017" /db_xref="GeneID:946661" CDS 2225801..2226379 /gene="yohD" /locus_tag="b2136" /gene_synonym="ECK2129; JW2124" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="DedA family inner membrane protein" /protein_id="NP_416640.2" /db_xref="GI:90111395" /db_xref="ASAP:ABE-0007059" /db_xref="UniProtKB/Swiss-Prot:P33366" /db_xref="EcoGene:EG12017" /db_xref="GeneID:946661" /translation="MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLV VLSVALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFM YGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHL KHWVWLILVVVLVVGVRWWLKRRGKKKPDHQA" repeat_region 2226385..2226468 /note="REP154 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(2226509..2227270) /gene="yohF" /locus_tag="b2137" /gene_synonym="ECK2130; JW2125; yohE" /db_xref="EcoGene:EG12019" /db_xref="GeneID:949126" CDS complement(2226509..2227270) /gene="yohF" /locus_tag="b2137" /gene_synonym="ECK2130; JW2125; yohE" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_416641.1" /db_xref="GI:16130075" /db_xref="ASAP:ABE-0007062" /db_xref="UniProtKB/Swiss-Prot:P33368" /db_xref="EcoGene:EG12019" /db_xref="GeneID:949126" /translation="MAQVAIITASDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTA REVVSHGVRAEIVQLDLGNLPEGALALEKLIQRLGRIDVLVNNAGAMTKAPFLDMAFD EWRKIFTVDVDGAFLCSQIAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHAL GGLTKAMALELVRHKILVNAVAPGAIATPMNGMDDSDVKPDAEPSIPLRRFGATHEIA SLVVWLCSEGANYTTGQSLIVDGGFMLANPQFNPE" gene complement(2227323..2228758) /gene="mdtQ" /locus_tag="b2139" /gene_synonym="ECK2131; JW5838; yohG; yohH" /pseudo /db_xref="EcoGene:EG12020" /db_xref="GeneID:949123" CDS complement(join(2227323..2228609,2228609..2228758)) /gene="mdtQ" /locus_tag="b2139" /gene_synonym="ECK2131; JW5838; yohG; yohH" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /note="pseudogene; putative channel/filament proteins" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0007067" /db_xref="ASAP:ABE-0007071" /db_xref="UniProtKB/Swiss-Prot:P33369" /db_xref="EcoGene:EG12020" /db_xref="GeneID:949123" gene 2228982..2229065 /gene="yohP" /locus_tag="b4679" /gene_synonym="ECK4494" /db_xref="EcoGene:EG14484" /db_xref="GeneID:7751636" CDS 2228982..2229065 /gene="yohP" /locus_tag="b4679" /gene_synonym="ECK4494" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_002791249.1" /db_xref="GI:226524732" /db_xref="UniProtKB/Swiss-Prot:C1P609" /db_xref="EcoGene:EG14484" /db_xref="GeneID:7751636" /translation="MKIILWAVLIIFLIGLLVVTGVFKMIF" gene complement(2229438..2230385) /gene="dusC" /locus_tag="b2140" /gene_synonym="ECK2133; JW2128; yohI" /db_xref="EcoGene:EG12022" /db_xref="GeneID:945458" CDS complement(2229438..2230385) /gene="dusC" /locus_tag="b2140" /gene_synonym="ECK2133; JW2128; yohI" /function="enzyme; tRNA modification" /note="putative regulator protein" /codon_start=1 /transl_table=11 /product="tRNA-dihydrouridine synthase C" /protein_id="NP_416645.1" /db_xref="GI:16130078" /db_xref="ASAP:ABE-0007074" /db_xref="UniProtKB/Swiss-Prot:P33371" /db_xref="EcoGene:EG12022" /db_xref="GeneID:945458" /translation="MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVK VFHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGCPSKT VNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQA GATELVVHGRTKEQGYRAEHIDWQAIGDIRQRLNIPVIANGEIWDWQSAQQCMAISGC DAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQW LSYLRKEYDEATELFQHVRVLNNSPDIARAIQAIDIEKL" gene 2230624..2231022 /gene="yohJ" /locus_tag="b2141" /gene_synonym="ECK2134; JW2129" /db_xref="EcoGene:EG12023" /db_xref="GeneID:949127" CDS 2230624..2231022 /gene="yohJ" /locus_tag="b2141" /gene_synonym="ECK2134; JW2129" /codon_start=1 /transl_table=11 /product="UPF0299 family inner membrane protein" /protein_id="NP_416646.1" /db_xref="GI:16130079" /db_xref="ASAP:ABE-0007078" /db_xref="UniProtKB/Swiss-Prot:P60632" /db_xref="EcoGene:EG12023" /db_xref="GeneID:949127" /translation="MSKTLNIIWQYLRAFVLIYACLYAGIFIASLLPVTIPGSIIGML ILFVLLALQILPAKWVNPGCYVLIRYMALLFVPIGVGVMQYFDLLRAQFGPVVVSCAV STLVVFLVVSWSSQLVHGERKVVGQKGSEE" gene 2231019..2231714 /gene="yohK" /locus_tag="b2142" /gene_synonym="ECK2135; JW2130" /db_xref="EcoGene:EG12024" /db_xref="GeneID:949125" CDS 2231019..2231714 /gene="yohK" /locus_tag="b2142" /gene_synonym="ECK2135; JW2130" /function="putative transport; Not classified" /note="putative seritonin transporter" /codon_start=1 /transl_table=11 /product="LrgB family inner membrane protein" /protein_id="NP_416647.1" /db_xref="GI:16130080" /db_xref="ASAP:ABE-0007080" /db_xref="UniProtKB/Swiss-Prot:P0AD19" /db_xref="EcoGene:EG12024" /db_xref="GeneID:949125" /translation="MMANIWWSLPLTLIVFFAARKLAARYKFPLLNPLLVAMVVIIPF LMLTGISYDSYFKGSEVLNDLLQPAVVALAYPLYEQLHQIRARWKSIITICFIGSVVA MVTGTSVALLMGASPEIAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAV FGHTLLNAMRIRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVLCGIITSLI APFLFPIILAVMG" gene 2231844..2232728 /gene="cdd" /locus_tag="b2143" /gene_synonym="ECK2136; JW2131" /db_xref="EcoGene:EG10137" /db_xref="GeneID:946663" CDS 2231844..2232728 /gene="cdd" /locus_tag="b2143" /gene_synonym="ECK2136; JW2131" /EC_number="3.5.4.5" /function="enzyme; Salvage of nucleosides and nucleotides" /experiment="N-terminus verified by Edman degradation: PMID 1567863,2692708,8506346,18482579" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="cytidine/deoxycytidine deaminase" /protein_id="NP_416648.1" /db_xref="GI:16130081" /db_xref="ASAP:ABE-0007086" /db_xref="UniProtKB/Swiss-Prot:P0ABF6" /db_xref="EcoGene:EG10137" /db_xref="GeneID:946663" /translation="MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSA TGLDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVH AEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDY LPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECK DGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDAT SATLKALGCHSIDRVLLA" repeat_region 2232736..2232769 /note="REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 2232878..2233597 /gene="sanA" /locus_tag="b2144" /gene_synonym="ECK2137; JW2132; sfiX; yeiF" /db_xref="EcoGene:EG12025" /db_xref="GeneID:949003" CDS 2232878..2233597 /gene="sanA" /locus_tag="b2144" /gene_synonym="ECK2137; JW2132; sfiX; yeiF" /function="transport; Drug/analog sensitivity" /GO_process="GO:0042493 - response to drug" /note="vancomycin sensitivity; sanA mutant has a defective envelope more permeable to vancomycin at 42 degrees" /codon_start=1 /transl_table=11 /product="DUF218 superfamily vancomycin high temperature exclusion protein" /protein_id="NP_416649.1" /db_xref="GI:16130082" /db_xref="ASAP:ABE-0007091" /db_xref="UniProtKB/Swiss-Prot:P0AFY2" /db_xref="EcoGene:EG12025" /db_xref="GeneID:949003" /translation="MLKRVFLSLLVLIGLLLLTVLGLDRWMSWKTAPYIYDELQDLPY RQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTM RKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHM GIQAQCYAVPSPKDMLSVRIREFAARFGALADLYIFKREPRFLGPLVPIPAMHQVPED AQGYPAVTPEQLLELQKKQGK" gene 2233600..2233839 /gene="yeiS" /locus_tag="b2145" /gene_synonym="ECK2138; JW5359" /db_xref="EcoGene:EG14073" /db_xref="GeneID:948983" CDS 2233600..2233839 /gene="yeiS" /locus_tag="b2145" /gene_synonym="ECK2138; JW5359" /codon_start=1 /transl_table=11 /product="DUF2542 family protein" /protein_id="NP_416650.1" /db_xref="GI:16130083" /db_xref="ASAP:ABE-0007093" /db_xref="UniProtKB/Swiss-Prot:P64536" /db_xref="EcoGene:EG14073" /db_xref="GeneID:948983" /translation="MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVY VWRAKNPGLFFAYMVAYIGFGILSIGMIVYLIFYR" gene 2234033..2235271 /gene="preT" /locus_tag="b2146" /gene_synonym="dpdA; ECK2139; JW2133; preB; yeiT" /db_xref="EcoGene:EG14074" /db_xref="GeneID:949049" CDS 2234033..2235271 /gene="preT" /locus_tag="b2146" /gene_synonym="dpdA; ECK2139; JW2133; preB; yeiT" /function="enzyme; pyrimidine metabolism" /experiment="N-terminus verified by Edman degradation: PMID 18482579" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="dihydropyrimidine dehydrogenase, NADH-dependent, subunit N" /protein_id="NP_416651.1" /db_xref="GI:16130084" /db_xref="ASAP:ABE-0007096" /db_xref="UniProtKB/Swiss-Prot:P76440" /db_xref="EcoGene:EG14074" /db_xref="GeneID:949049" /translation="MPQQNYLDELTPAFTSLLAIKEASRCLLCHDAPCSQACPAQTDP GKFIRSIYFRNFKGAAETIRENNALGAVCARVCPTEKLCQSGCTRAGVDAPIDIGRLQ RFVTDFEQQTGMEIYQPGTKTLGKVAIIGAGPAGLQASVTLTNQGYDVTIYEKEAHPG GWLRNGIPQFRLPQSVLDAEIARIEKMGVTIKCNNEVGNTLTLEQLKAENRAVLVTVG LSSGSGLPLFEHSDVEIAVDFLQRARQAQGDISIPQSALIIGGGDVAMDVASTLKVLG CQAVTCVAREELDEFPASEKEFTSARELGVSIIDGFTPVAVEGNKVTFKHVRLSGELT MAADKIILAVGQHARLDAFAELEPQRNTIKTQNYQTRDPQVFAAGDIVEGDKTVVYAV KTGKEAAEAIHHYLEGACSC" gene 2235265..2236500 /gene="preA" /locus_tag="b2147" /gene_synonym="ECK2140; JW2134; yeiA" /db_xref="EcoGene:EG11289" /db_xref="GeneID:949037" CDS 2235265..2236500 /gene="preA" /locus_tag="b2147" /gene_synonym="ECK2140; JW2134; yeiA" /function="enzyme; pyrimidine metabolism" /experiment="N-terminus verified by Edman degradation: PMID 18482579" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="dihydropyrimidine dehydrogenase, NADH-dependent, subunit C" /protein_id="NP_416652.4" /db_xref="GI:90111398" /db_xref="ASAP:ABE-0007098" /db_xref="UniProtKB/Swiss-Prot:P25889" /db_xref="EcoGene:EG11289" /db_xref="GeneID:949037" /translation="MLTKDLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGV VFKTIGFFIANEVSPRFDHLVKEDTGFIGFKNMEQIAEHPLEENLAALRRLKEDYPDK VLIASIMGENEQQWEELARLVQEAGADMIECNFSCPQMTSHAMGSDVGQSPELVEKYC RAVKRGSTLPMLAKMTPNIGDMCEVALAAKRGGADGIAAINTVKSITNIDLNQKIGMP IVNGKSSISGYSGKAVKPIALRFIQQMRTHPELRDFPISGIGGIETWEDAAEFLLLGA ATLQVTTGIMQYGYRIVEDMASGLSHYLADQGFDSLQEMVGLANNNIVPAEDLDRSYI VYPRINLDKCVGCGRCYISCYDGGHQAMEWSEKTRTPHCNTEKCVGCLLCGHVCPVGC IELGEVKFKKGEKEHPVTL" repeat_region 2236534..2236683 /note="REP156 (repetitive extragenic palindromic) element; contains 3 REP sequences" gene complement(2236743..2237753) /gene="mglC" /locus_tag="b2148" /gene_synonym="ECK2141; JW2135; mglP" /db_xref="EcoGene:EG10594" /db_xref="GeneID:949039" CDS complement(2236743..2237753) /gene="mglC" /locus_tag="b2148" /gene_synonym="ECK2141; JW2135; mglP" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="methyl-galactoside transport and galactose taxis; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="methyl-galactoside transporter subunit" /protein_id="NP_416653.1" /db_xref="GI:16130086" /db_xref="ASAP:ABE-0007101" /db_xref="UniProtKB/Swiss-Prot:P23200" /db_xref="EcoGene:EG10594" /db_xref="GeneID:949039" /translation="MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSN ILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDNANKVFPEMAT MPIALVILIVCAIGAVIGLINGLIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASP ISGFDSGFSTFAQGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPE AAKVSGVNVGLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGG VSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSLKYAR KK" gene complement(2237769..2239289) /gene="mglA" /locus_tag="b2149" /gene_synonym="ECK2142; JW2136; mglP" /db_xref="EcoGene:EG10592" /db_xref="GeneID:949036" CDS complement(2237769..2239289) /gene="mglA" /locus_tag="b2149" /gene_synonym="ECK2142; JW2136; mglP" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="ATP-binding component of methyl-galactoside transport and galactose taxis" /codon_start=1 /transl_table=11 /product="methyl-galactoside ABC transporter ATPase" /protein_id="NP_416654.1" /db_xref="GI:16130087" /db_xref="ASAP:ABE-0007103" /db_xref="UniProtKB/Swiss-Prot:P0AAG8" /db_xref="EcoGene:EG10592" /db_xref="GeneID:949036" /translation="MVSSTTPSSGEYLLEMSGINKSFPGVKALDNVNLKVRPHSIHAL MGENGAGKSTLLKCLFGIYQKDSGTILFQGKEIDFHSAKEALENGISMVHQELNLVLQ RSVMDNMWLGRYPTKGMFVDQDKMYRETKAIFDELDIDIDPRARVGTLSVSQMQMIEI AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDE VTVLRDGQWIATEPLAGLTMDKIIAMMVGRSLNQRFPDKENKPGEVILEVRNLTSLRQ PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKQINNHNANE AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDS MRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIA ELAKKGKGIIIISSEMPELLGITDRILVMSNGLVSGIVDTKTTTQNEILRLASLHL" gene complement(2239350..2240348) /gene="mglB" /locus_tag="b2150" /gene_synonym="ECK2143; JW2137" /db_xref="EcoGene:EG10593" /db_xref="GeneID:949041" CDS complement(2239350..2240348) /gene="mglB" /locus_tag="b2150" /gene_synonym="ECK2143; JW2137" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006457 - protein folding" /note="galactose-binding transport protein; receptor for galactose taxis; periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="methyl-galactoside transporter subunit" /protein_id="NP_416655.1" /db_xref="GI:16130088" /db_xref="ASAP:ABE-0007108" /db_xref="UniProtKB/Swiss-Prot:P0AEE5" /db_xref="EcoGene:EG10593" /db_xref="GeneID:949041" /translation="MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVR KAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK ARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNK DGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAW LSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGT VLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK" gene complement(2240628..2241668) /gene="galS" /locus_tag="b2151" /gene_synonym="ECK2144; JW2138; mglD" /db_xref="EcoGene:EG10365" /db_xref="GeneID:949043" CDS complement(2240628..2241668) /gene="galS" /locus_tag="b2151" /gene_synonym="ECK2144; JW2138; mglD" /function="regulator; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 8982002" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006350 - transcription" /note="mgl repressor, galactose operon inducer" /codon_start=1 /transl_table=11 /product="galactose- and fucose-inducible galactose regulon transcriptional isorepressor; mgl operon transcriptional repressor; autorepressor" /protein_id="NP_416656.1" /db_xref="GI:16130089" /db_xref="ASAP:ABE-0007110" /db_xref="UniProtKB/Swiss-Prot:P25748" /db_xref="EcoGene:EG10365" /db_xref="GeneID:949043" /translation="MITIRDVARQAGVSVATVSRVLNNSTLVSADTREAVMKAVSELD YRPNANAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAE KERHAIEVLIRQRCNALIVHSKALSDDELAQFMDNIPGMVLINRVVPGYAHRCVCLDN LSGARMATRMLLNNGHQRIGYLSSSHGIEDDAMRKAGWMSALKEQDIIPPESWIGAGT PDMPGGEAAMVELLGRNLQLTAVFAYNDNMAAGALTALKDNGIAIPLHLSIIGFDDIP IARYTDPQLTTVRYPIASMAKLATELALQGAAGNIDPRASHCFMPTLVRRHSVATRQN AAAITNSTNQAM" gene complement(2241810..2242967) /gene="yeiB" /locus_tag="b2152" /gene_synonym="ECK2145; JW2139" /db_xref="EcoGene:EG11290" /db_xref="GeneID:949044" CDS complement(2241810..2242967) /gene="yeiB" /locus_tag="b2152" /gene_synonym="ECK2145; JW2139" /codon_start=1 /transl_table=11 /product="DUF418 family putative inner membrane protein" /protein_id="NP_416657.1" /db_xref="GI:16130090" /db_xref="ASAP:ABE-0007115" /db_xref="UniProtKB/Swiss-Prot:P25747" /db_xref="EcoGene:EG11290" /db_xref="GeneID:949044" /translation="MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAITP RDAWTWAFLDLIGQVKFLTLFALLFGAGLQMLLPRGRRWIQSRLTLLVLLGFIHGLLF WDGDILLAYGLVGLICWRLVRDAPSVKSLFNTGVMLYLVGLGVLLLLGLISDSQTSRA WTPDASAILYEKYWKLHGGVEAISNRADGVGNSLLALGAQYGWQLAGMMLIGAALMRS GWLKGQFSLRHYRRTGFVLVAIGVTINLPAIALQWQLDWAYRWCAFLLQMPRELSAPF QAIGYASLFYGFWPQLSRFKLVLAIACVGRMALTNYLLQTLICTTLFYHLGLFMHFDR LELLAFVIPVWLANILFSVIWLRYFRQGPVEWLWRQLTLRAAGPAISKTSR" gene complement(2242984..2243652) /gene="folE" /locus_tag="b2153" /gene_synonym="ECK2146; JW2140" /db_xref="EcoGene:EG11375" /db_xref="GeneID:949040" CDS complement(2242984..2243652) /gene="folE" /locus_tag="b2153" /gene_synonym="ECK2146; JW2140" /EC_number="3.5.4.16" /function="enzyme; Biosynthesis of cofactors, carriers: Folic acid" /GO_process="GO:0046656 - folic acid biosynthetic process" /codon_start=1 /transl_table=11 /product="GTP cyclohydrolase I" /protein_id="NP_416658.1" /db_xref="GI:16130091" /db_xref="ASAP:ABE-0007117" /db_xref="UniProtKB/Swiss-Prot:P0A6T5" /db_xref="EcoGene:EG11375" /db_xref="GeneID:949040" /translation="MPSLSKEAALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHM TEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYANFPKITLIENKMKVDEMVTV RDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQIL IALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAV RHHN" gene 2243910..2244746 /gene="yeiG" /locus_tag="b2154" /gene_synonym="ECK2147; JW2141" /db_xref="EcoGene:EG12026" /db_xref="GeneID:949045" CDS 2243910..2244746 /gene="yeiG" /locus_tag="b2154" /gene_synonym="ECK2147; JW2141" /EC_number="3.1.1.-" /function="enzyme; Formaldehyde degradation" /note="putative esterase" /codon_start=1 /transl_table=11 /product="S-formylglutathione hydrolase" /protein_id="NP_416659.1" /db_xref="GI:16130092" /db_xref="ASAP:ABE-0007124" /db_xref="UniProtKB/Swiss-Prot:P33018" /db_xref="EcoGene:EG12026" /db_xref="GeneID:949045" /translation="MEMLEEHRCFEGWQQRWRHDSSTLNCPMTFSIFLPPPRDHTPPP VLYWLSGLTCNDENFTTKAGAQRVAAELGIVLVMPDTSPRGEKVANDDGYDLGQGAGF YLNATQPPWATHYRMYDYLRDELPALVQSQFNVSDRCAISGHSMGGHGALIMALKNPG KYTSVSAFAPIVNPCSVPWGIKAFSSYLGEDKNAWLEWDSCALMYASNAQDAIPTLID QGDNDQFLADQLQPAVLAEAARQKAWPMTLRIQPGYDHSYYFIASFIEDHLRFHAQYL LK" gene complement(2244778..2246769) /gene="cirA" /locus_tag="b2155" /gene_synonym="cir; ECK2148; feuA; JW2142" /db_xref="EcoGene:EG10155" /db_xref="GeneID:949042" CDS complement(2244778..2246769) /gene="cirA" /locus_tag="b2155" /gene_synonym="cir; ECK2148; feuA; JW2142" /function="membrane; Outer membrane constituents" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="ferric iron outer membrane transporter, TonB-dependent; surface receptor and translocator for colicin I" /codon_start=1 /transl_table=11 /product="colicin IA outer membrane receptor and translocator; ferric iron-catecholate transporter" /protein_id="NP_416660.1" /db_xref="GI:16130093" /db_xref="ASAP:ABE-0007126" /db_xref="UniProtKB/Swiss-Prot:P17315" /db_xref="EcoGene:EG10155" /db_xref="GeneID:949042" /translation="MFRLNPFVRVGLCLSAISCAWPVLAVDDDGETMVVTASSVEQNL KDAPASISVITQEDLQRKPVQNLKDVLKEVPGVQLTNEGDNRKGVSIRGLDSSYTLIL VDGKRVNSRNAVFRHNDFDLNWIPVDSIERIEVVRGPMSSLYGSDALGGVVNIITKKI GQKWSGTVTVDTTIQEHRDRGDTYNGQFFTSGPLIDGVLGMKAYGSLAKREKDDPQNS TTTDTGETPRIEGFSSRDGNVEFAWTPNQNHDFTAGYGFDRQDRDSDSLDKNRLERQN YSVSHNGRWDYGTSELKYYGEKVENKNPGNSSPITSESNTVDGKYTLPLTAINQFLTV GGEWRHDKLSDAVNLTGGTSSKTSASQYALFVEDEWRIFEPLALTTGVRMDDHETYGE HWSPRAYLVYNATDTVTVKGGWATAFKAPSLLQLSPDWTSNSCRGACKIVGSPDLKPE TSESWELGLYYMGEEGWLEGVESSVTVFRNDVKDRISISRTSDVNAAPGYQNFVGFET GANGRRIPVFSYYNVNKARIQGVETELKIPFNDEWKLSINYTYNDGRDVSNGENKPLS DLPFHTANGTLDWKPLALEDWSFYVSGHYTGQKRADSATAKTPGGYTIWNTGAAWQVT KDVKLRAGVLNLGDKDLSRDDYSYNEDGRRYFMAVDYRF" gene complement(2247063..2248532) /gene="lysP" /locus_tag="b2156" /gene_synonym="cadR; ECK2149; JW2143" /db_xref="EcoGene:EG11337" /db_xref="GeneID:946667" CDS complement(2247063..2248532) /gene="lysP" /locus_tag="b2156" /gene_synonym="cadR; ECK2149; JW2143" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009089 - lysine biosynthetic process via diaminopimelate" /note="lysine-specific permease" /codon_start=1 /transl_table=11 /product="lysine transporter" /protein_id="NP_416661.1" /db_xref="GI:16130094" /db_xref="ASAP:ABE-0007131" /db_xref="UniProtKB/Swiss-Prot:P25737" /db_xref="EcoGene:EG11337" /db_xref="GeneID:946667" /translation="MVSETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATIS QAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNY WYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFS LIKVTTVIVFIIVGVLMIIGIFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIVGFSF QGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDV KDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPR IFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAIS HYRFRRGYVLQGHDINDLPYRSGFFPLGPIFAFILCLIITLGQNYEAFLKDTIDWGGV AATYIGIPLFLIIWFGYKLIKGTHFVRYSEMKFPQNDKK" gene complement(2248737..2249618) /gene="yeiE" /locus_tag="b2157" /gene_synonym="ECK2150; JW2144" /db_xref="EcoGene:EG12105" /db_xref="GeneID:946657" CDS complement(2248737..2249618) /gene="yeiE" /locus_tag="b2157" /gene_synonym="ECK2150; JW2144" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator" /protein_id="NP_416662.1" /db_xref="GI:16130095" /db_xref="ASAP:ABE-0007138" /db_xref="UniProtKB/Swiss-Prot:P0ACR4" /db_xref="EcoGene:EG12105" /db_xref="GeneID:946657" /translation="MHITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQ LGVQLFDRVGKRLVVNEHGRLLYPRALALLEQAVEIEQLFREDNGAIRIYASSTIGNY ILPAVIARYRHDYPQLPIELSVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISEPWLE DELVVFAAPTSPLARGPVTLEQLAAAPWILRERGSGTREIVDYLLLSHLPKFEMAMEL GNSEAIKHAVRHGLGISCLSRRVIEDQLQAGTLSEVAVPLPRLMRTLWRIHHRQKHLS NALRRFLDYCDPANVPR" gene 2249717..2250766 /gene="yeiH" /locus_tag="b2158" /gene_synonym="ECK2151; JW2145" /db_xref="EcoGene:EG12027" /db_xref="GeneID:946668" CDS 2249717..2250766 /gene="yeiH" /locus_tag="b2158" /gene_synonym="ECK2151; JW2145" /codon_start=1 /transl_table=11 /product="UPF0324 family inner membrane protein" /protein_id="NP_416663.1" /db_xref="GI:16130096" /db_xref="ASAP:ABE-0007142" /db_xref="UniProtKB/Swiss-Prot:P62723" /db_xref="EcoGene:EG12027" /db_xref="GeneID:946668" /translation="MTNITLQKQHRTLWHFIPGLALSAVITGVALWGGSIPAVAGAGF SALTLAILLGMVLGNTIYPHIWKSCDGGVLFAKQYLLRLGIILYGFRLTFSQIADVGI SGIIIDVLTLSSTFLLACFLGQKVFGLDKHTSWLIGAGSSICGAAAVLATEPVVKAEA SKVTVAVATVVIFGTVAIFLYPAIYPLMSQWFSPETFGIYIGSTVHEVAQVVAAGHAI SPDAENAAVISKMLRVMMLAPFLILLAARVKQLSGANSGEKSKITIPWFAILFIVVAI FNSFHLLPQSVVNMLVTLDTFLLAMAMAALGLTTHVSALKKAGAKPLLMALVLFAWLI VGGGAINYVIQSVIA" gene 2250840..2251697 /gene="nfo" /locus_tag="b2159" /gene_synonym="ECK2152; JW2146" /db_xref="EcoGene:EG10651" /db_xref="GeneID:946669" CDS 2250840..2251697 /gene="nfo" /locus_tag="b2159" /gene_synonym="ECK2152; JW2146" /EC_number="3.1.21.2" /function="enzyme; Degradation of DNA" /GO_process="GO:0006308 - DNA catabolic process; GO:0009314 - response to radiation" /note="endonuclease IV" /codon_start=1 /transl_table=11 /product="endonuclease IV with intrinsic 3'-5' exonuclease activity" /protein_id="NP_416664.1" /db_xref="GI:16130097" /db_xref="ASAP:ABE-0007146" /db_xref="UniProtKB/Swiss-Prot:P0A6C1" /db_xref="EcoGene:EG10651" /db_xref="GeneID:946669" /translation="MKYIGAHVSAAGGLANAAIRAAEIDATAFALFTKNQRQWRAAPL TTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLG LSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKFEH LAAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPAECEKTFADFARTVGFKYLRGMHLN DAKSTFGSRVDRHHSLGEGNIGHDAFRWIMQDDRFDGIPLILETINPDIWAEEIAWLK AQQTEKAVA" gene 2251700..2252788 /gene="yeiI" /locus_tag="b2160" /gene_synonym="ECK2153; JW2147" /db_xref="EcoGene:EG12028" /db_xref="GeneID:946640" CDS 2251700..2252788 /gene="yeiI" /locus_tag="b2160" /gene_synonym="ECK2153; JW2147" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative kinase" /protein_id="NP_416665.1" /db_xref="GI:16130098" /db_xref="ASAP:ABE-0007149" /db_xref="UniProtKB/Swiss-Prot:P33020" /db_xref="EcoGene:EG12028" /db_xref="GeneID:946640" /translation="MNNREKEILAILRRNPLIQQNEIADMLQISRSRVAAHIMDLMRK GRIKGKGYILTEQEYCVVVGTINMDIRGMADIRYPQSASHPGTIHCSAGGVGRNIAHN LALLGRDVHLLSVIGDDFYGEMLLEETRRAGVNVSGCVRLHGQSTSTYLAIANRDDQT VLAINDTHLLEQLTPQLLNGSRDLLRHAGVVLADCNLTAEALEWVFTLADEIPVFVDT VSEFKAGKIKHWLAHIHTLKPTLPELEILWGQAITSDADRNTAVNALHQQGVQQLFVY LPDESVYCSEKDGEQFLLTAPAHTTVDSFGADDGFMAGLVYSFLEGYSFRDSARFAVA CAAISRASGSLNNPTLSADNALSLVPMV" repeat_region 2252796..2252886 /note="RIP157 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(2252895..2254145) /gene="nupX" /locus_tag="b2161" /gene_synonym="ECK2154; JW2148; yeiJ" /db_xref="EcoGene:EG12029" /db_xref="GeneID:946655" CDS complement(2252895..2254145) /gene="nupX" /locus_tag="b2161" /gene_synonym="ECK2154; JW2148; yeiJ" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative pyrimidine nucleoside transporter" /codon_start=1 /transl_table=11 /product="nucleoside permease" /protein_id="NP_416666.1" /db_xref="GI:16130099" /db_xref="ASAP:ABE-0007152" /db_xref="UniProtKB/Swiss-Prot:P33021" /db_xref="EcoGene:EG12029" /db_xref="GeneID:946655" /translation="MDVMRSVLGMVVLLTIAFLLSVNKKKISLRTVGAALVLQVVIGG IMLWLPPGRWVAEKVAFGVHKVMAYSDAGSAFIFGSLVGPKMDTLFDGAGFIFGFRVL PAIIFVTALVSILYYIGVMGILIRILGGIFQKALNISKIESFVAVTTIFLGQNEIPAI VKPFIDRLNRNELFTAICSGMASIAGSTMIGYAALGVPVEYLLAASLMAIPGGILFAR LLSPATESSQVSFNNLSFTETPPKSIIEAAATGAMTGLKIAAGVATVVMAFVAIIALI NGIIGGVGGWFGFEHASLESILGYLLAPLAWVMGVDWSDANLAGSLIGQKLAINEFVA YLNFSPYLQTAGTLDAKTVAIISFALCGFANFGSIGVVVGAFSAVAPHRAPEIAQLGL RALAAATLSNLMSATIAGFFIGLA" gene complement(2254245..2255186) /gene="rihB" /locus_tag="b2162" /gene_synonym="ECK2155; JW2149; yeiK" /db_xref="EcoGene:EG12030" /db_xref="GeneID:946646" CDS complement(2254245..2255186) /gene="rihB" /locus_tag="b2162" /gene_synonym="ECK2155; JW2149; yeiK" /EC_number="3.2.2.-" /codon_start=1 /transl_table=11 /product="ribonucleoside hydrolase 2" /protein_id="NP_416667.1" /db_xref="GI:16130100" /db_xref="ASAP:ABE-0007156" /db_xref="UniProtKB/Swiss-Prot:P33022" /db_xref="EcoGene:EG12030" /db_xref="GeneID:946646" /translation="MEKRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLD KTLINGLNVCQKLEINVPVYAGMPQPIMRQQIVADNIHGETGLDGPVFEPLTRQAEST HAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGTGNFT PSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSD IMNFTLKTQFENYGLAGGPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCD ELGVLGKPANTKVGITIDTDWFWGLVEECVRGYIKTH" gene 2255355..2256014 /gene="yeiL" /locus_tag="b2163" /gene_synonym="ECK2156; JW2150" /db_xref="EcoGene:EG12031" /db_xref="GeneID:946670" CDS 2255355..2256014 /gene="yeiL" /locus_tag="b2163" /gene_synonym="ECK2156; JW2150" /function="putative regulator; Not classified" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent" /note="stationary phase nitrogen starvation regulator" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_416668.3" /db_xref="GI:49176193" /db_xref="ASAP:ABE-0007160" /db_xref="UniProtKB/Swiss-Prot:P0A9E9" /db_xref="EcoGene:EG12031" /db_xref="GeneID:946670" /translation="MSESAFKDCFLTDVSADTRLFHFLARDYIVQEGQQPSWLFYLTR GRARLYATLANGRVSLIDFFAAPCFIGEIELIDKDHEPRAVQAIEECWCLALPMKHYR PLLLNDTLFLRKLCVTLSHKNYRNIVSLTQNQSFPLVNRLAAFILLSQEGDLYHEKHT QAAEYLGVSYRHLLYVLAQFIHDGLLIKSKKGYLIKNRKQLSGLALEMDPENKFSGMM Q" repeat_region 2256038..2256074 /note="REP158 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2256085..2257335) /gene="psuT" /locus_tag="b2164" /gene_synonym="ECK2157; JW2151; pscT; yeiM" /db_xref="EcoGene:EG12032" /db_xref="GeneID:946671" CDS complement(2256085..2257335) /gene="psuT" /locus_tag="b2164" /gene_synonym="ECK2157; JW2151; pscT; yeiM" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport system permease protein" /codon_start=1 /transl_table=11 /product="putative nucleoside transporter" /protein_id="NP_416669.1" /db_xref="GI:16130102" /db_xref="ASAP:ABE-0007163" /db_xref="UniProtKB/Swiss-Prot:P33024" /db_xref="EcoGene:EG12032" /db_xref="GeneID:946671" /translation="MDIMRSVVGMVVLLAIAFLLSVNKKSISLRTVGAALLLQIAIGG IMLYFPPGKWAVEQAALGVHKVMSYSDAGSAFIFGSLVGPKMDVLFDGAGFIFAFRVL PAIIFVTALISLLYYIGVMGLLIRILGSIFQKALNISKIESFVAVTTIFLGQNEIPAI VKPFIDRMNRNELFTAICSGMASIAGSMMIGYAGMGVPIDYLLAASLMAIPGGILFAR ILSPATEPSQVTFENLSFSETPPKSFIEAAASGAMTGLKIAAGVATVVMAFVAIIALI NGIIGGIGGWFGFANASLESIFGYVLAPLAWIMGVDWSDANLAGSLIGQKLAINEFVA YLSFSPYLQTGGTLEVKTIAIISFALCGFANFGSIGVVVGAFSAISPKRAPEIAQLGL RALAAATLSNLMSATIAGFFIGLA" gene complement(2257429..2258367) /gene="psuG" /locus_tag="b2165" /gene_synonym="ECK2158; JW2152; pscG; yeiN" /db_xref="EcoGene:EG12033" /db_xref="GeneID:946699" CDS complement(2257429..2258367) /gene="psuG" /locus_tag="b2165" /gene_synonym="ECK2158; JW2152; pscG; yeiN" /function="enzyme; pseudouridine catabolism" /codon_start=1 /transl_table=11 /product="pseudouridine 5'-phosphate glycosidase" /protein_id="NP_416670.1" /db_xref="GI:16130103" /db_xref="ASAP:ABE-0007165" /db_xref="UniProtKB/Swiss-Prot:P33025" /db_xref="EcoGene:EG12033" /db_xref="GeneID:946699" /translation="MSELKISPELLQISPEVQDALKNKKPVVALESTIISHGMPFPQN AQTAIEVEETIRKQGAVPATIAIIGGVMKVGLSKEEIELLGREGHNVTKVSRRDLPFV VAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNVTV VCAGAKSILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTSPFDVSIRLDSASEIARA MVVKWQSGLNGGLVVANPIPEQFAMPEHTINAAIDQAVAEAEAQGVIGKESTPFLLAR VAELTGGDSLKSNIQLVFNNAILASEIAKEYQRLAG" gene complement(2258355..2259296) /gene="psuK" /locus_tag="b2166" /gene_synonym="ECK2159; JW2153; pscK; yeiC" /db_xref="EcoGene:EG11646" /db_xref="GeneID:946664" CDS complement(2258355..2259296) /gene="psuK" /locus_tag="b2166" /gene_synonym="ECK2159; JW2153; pscK; yeiC" /function="enzyme; pseudouridine utilization" /note="putative kinase" /codon_start=1 /transl_table=11 /product="pseudouridine kinase" /protein_id="NP_416671.1" /db_xref="GI:16130104" /db_xref="ASAP:ABE-0007168" /db_xref="UniProtKB/Swiss-Prot:P30235" /db_xref="EcoGene:EG11646" /db_xref="GeneID:946664" /translation="MREKDYVVIIGSANIDVAGYSHESLNYADSNPGKIKFTPGGVGR NIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLD NTGEMLVAINDMNISNAITAEYLAQHGEFIQRAKVIVADCNISEEALAWILDNAANVP VFVDPVSAWKCVKVRDRLNQIHTLKPNRLEAETLSGIALSGREDVAKVAAWFHQHGLN RLVLSMGGDGVYYSDISGESGWSAPIKTNVINVTGAGDAMMAGLASCWVDGMPFAESV RFAQGCSSMALSCEYTNNPDLSIANVISLVENAECLN" gene complement(2259719..2261410) /gene="fruA" /locus_tag="b2167" /gene_synonym="ECK2160; JW2154; ptsF" /db_xref="EcoGene:EG10336" /db_xref="GeneID:946672" CDS complement(2259719..2261410) /gene="fruA" /locus_tag="b2167" /gene_synonym="ECK2160; JW2154; ptsF" /function="regulator; Degradation of small molecules: Carbon compounds" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="PTS system, fructose-specific transport protein" /codon_start=1 /transl_table=11 /product="fused fructose-specific PTS enzymes: IIBcomponent/IIC components" /protein_id="NP_416672.1" /db_xref="GI:16130105" /db_xref="ASAP:ABE-0007172" /db_xref="UniProtKB/Swiss-Prot:P20966" /db_xref="EcoGene:EG10336" /db_xref="GeneID:946672" /translation="MKTLLIIDANLGQARAYMAKTLLGAAARKAKLEIIDNPNDAEMA IVLGDSIPNDSALNGKNVWLGDISRAVAHPELFLSEAKGHAKPYTAPVAATAPVAASG PKRVVAVTACPTGVAHTFMAAEAIETEAKKRGWWVKVETRGSVGAGNAITPEEVAAAD LVIVAADIEVDLAKFAGKPMYRTSTGLALKKTAQELDKAVAEATPYEPAGKAQTATTE SKKESAGAYRHLLTGVSYMLPMVVAGGLCIALSFAFGIEAFKEPGTLAAALMQIGGGS AFALMVPVLAGYIAFSIADRPGLTPGLIGGMLAVSTGSGFIGGIIAGFLAGYIAKLIS TQLKLPQSMEALKPILIIPLISSLVVGLAMIYLIGKPVAGILEGLTHWLQTMGTANAV LLGAILGGMMCTDMGGPVNKAAYAFGVGLLSTQTYGPMAAIMAAGMVPPLAMGLATMV ARRKFDKAQQEGGKAALVLGLCFISEGAIPFAARDPMRVLPCCIVGGALTGAISMAIG AKLMAPHGGLFVLLIPGAITPVLGYLVAIIAGTLVAGLAYAFLKRPEVDAVAKAA" gene complement(2261427..2262365) /gene="fruK" /locus_tag="b2168" /gene_synonym="ECK2161; fpk; JW2155" /db_xref="EcoGene:EG10337" /db_xref="GeneID:946676" CDS complement(2261427..2262365) /gene="fruK" /locus_tag="b2168" /gene_synonym="ECK2161; fpk; JW2155" /EC_number="2.7.1.56" /function="enzyme; Energy metabolism, carbon: Glycolysis" /GO_process="GO:0006096 - glycolysis" /codon_start=1 /transl_table=11 /product="fructose-1-phosphate kinase" /protein_id="NP_416673.1" /db_xref="GI:16130106" /db_xref="ASAP:ABE-0007174" /db_xref="UniProtKB/Swiss-Prot:P0AEW9" /db_xref="EcoGene:EG10337" /db_xref="GeneID:946676" /translation="MSRRVATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGIN VAKVLKDLGIDVTVGGFLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGE VTDFNFSGFEVTPADWERFVTDSLSWLGQFDMVCVSGSLPSGVSPEAFTDWMTRLRSQ CPCIIFDSSREALVAGLKAAPWLVKPNRRELEIWAGRKLPEMKDVIEAAHALREQGIA HVVISLGAEGALWVNASGEWIAKPPSVDVVSTVGAGDSMVGGLIYGLLMRESSEHTLR LATAVAALAVSQSNVGITDRPQLAAMMARVDLQPFN" gene complement(2262365..2263495) /gene="fruB" /locus_tag="b2169" /gene_synonym="ECK2162; fpr; fruF; JW2156" /db_xref="EcoGene:EG10005" /db_xref="GeneID:946677" CDS complement(2262365..2263495) /gene="fruB" /locus_tag="b2169" /gene_synonym="ECK2162; fpr; fruF; JW2156" /EC_number="2.7.1.69" /function="enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="PTS system, fructose-specific IIA/fpr component" /codon_start=1 /transl_table=11 /product="fused fructose-specific PTS enzymes: IIA component/HPr component" /protein_id="NP_416674.1" /db_xref="GI:16130107" /db_xref="ASAP:ABE-0007180" /db_xref="UniProtKB/Swiss-Prot:P69811" /db_xref="EcoGene:EG10005" /db_xref="GeneID:946677" /translation="MFQLSVQDIHPGEKAGDKEEAIRQVAAALVQAGNVAEGYVNGML AREQQTSTFLGNGIAIPHGTTDTRDQVLKTGVQVFQFPEGVTWGDGQVAYVAIGIAAS SDEHLGLLRQLTHVLSDDSVAEQLKSATTAEELRALLMGEKQSEQLKLDNEMLTLDIV ASDLLTLQALNAARLKEAGAVDATFVTKAINEQPLNLGQGIWLSDSAEGNLRSAIAVS RAANAFDVDGETAAMLVSVAMNDDQPIAVLKRLADLLLDNKADRLLKADAATLLALLT SDDAPTDDVLSAEFVVRNEHGLHARPGTMLVNTIKQFNSDITVTNLDGTGKPANGRSL MKVVALGVKKGHRLRFTAQGADAEQALKAIGDAIAAGLGEGA" gene 2263863..2265044 /gene="setB" /locus_tag="b2170" /gene_synonym="ECK2163; JW2157; yeiO" /db_xref="EcoGene:EG12034" /db_xref="GeneID:946673" CDS 2263863..2265044 /gene="setB" /locus_tag="b2170" /gene_synonym="ECK2163; JW2157; yeiO" /function="orf; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="lactose/glucose efflux system" /protein_id="NP_416675.1" /db_xref="GI:16130108" /db_xref="ASAP:ABE-0007184" /db_xref="UniProtKB/Swiss-Prot:P33026" /db_xref="EcoGene:EG12034" /db_xref="GeneID:946673" /translation="MHNSPAVSSAKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTD EVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWN RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGP PLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLATGTIEAPRRNRRDT LLLFVICTLMWGSNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFA KRLGKRFLMRVAAVGGVCFYAGMLMAHSPVILLGLQLLNAIFIGILGGIGMLYFQDLM PGQAGSATTLYTNTSRVGWIIAGSVAGIVAEIWNYHAVFWFAMVMIIATLFCLLRIKD V" gene complement(2265041..2265295) /gene="yeiW" /locus_tag="b4502" /gene_synonym="ECK2164; JW5361" /db_xref="EcoGene:EG14375" /db_xref="GeneID:4056031" CDS complement(2265041..2265295) /gene="yeiW" /locus_tag="b4502" /gene_synonym="ECK2164; JW5361" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="UPF0153 cysteine cluster protein" /protein_id="YP_588461.1" /db_xref="GI:94541118" /db_xref="ASAP:ABE-0285016" /db_xref="UniProtKB/Swiss-Prot:P0AFT8" /db_xref="EcoGene:EG14375" /db_xref="GeneID:4056031" /translation="MECRPGCGACCTAPSISSPIPGMPDGKPANTPCIQLDEQQRCKI FTSPLRPKVCAGLQASAEMCGNSRQQAMTWLIDLEMLTAP" gene 2265450..2266022 /gene="yeiP" /locus_tag="b2171" /gene_synonym="ECK2165; JW5362" /db_xref="EcoGene:EG12035" /db_xref="GeneID:946674" CDS 2265450..2266022 /gene="yeiP" /locus_tag="b2171" /gene_synonym="ECK2165; JW5362" /GO_process="GO:0006412 - translation" /note="putative elongation factor" /codon_start=1 /transl_table=11 /product="elongation factor P-like protein" /protein_id="NP_416676.4" /db_xref="GI:90111399" /db_xref="ASAP:ABE-0007187" /db_xref="UniProtKB/Swiss-Prot:P0A6N8" /db_xref="EcoGene:EG12035" /db_xref="GeneID:946674" /translation="MPRANEIKKGMVLNYNGKLLLVKDIDIQSPTARGAATLYKMRFS DVRTGLKVEERFKGDDIVDTVTLTRRYVDFSYVDGNEYVFMDKEDYTPYTFTKDQIEE ELLFMPEGGMPDMQVLTWDGQLLALELPQTVDLEIVETAPGIKGASASARNKPATLST GLVIQVPEYLSPGEKIRIHIEERRYMGRAD" gene 2266245..2267711 /gene="yeiQ" /locus_tag="b2172" /gene_synonym="ECK2166; JW2160" /db_xref="EcoGene:EG12036" /db_xref="GeneID:946688" CDS 2266245..2267711 /gene="yeiQ" /locus_tag="b2172" /gene_synonym="ECK2166; JW2160" /function="putative enzyme; Not classified" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="putative NAD-dependent D-mannonate oxidoreductase" /protein_id="NP_416677.1" /db_xref="GI:16130110" /db_xref="ASAP:ABE-0007191" /db_xref="UniProtKB/Swiss-Prot:P33029" /db_xref="EcoGene:EG12036" /db_xref="GeneID:946688" /translation="MNTIASVTLPHHVHAPRYDRQQLQSRIVHFGFGAFHRAHQALLT DRVLNAQGGDWGICEISLFSGDQLMSQLRAQNHLYTVLEKGADGNQVIIVGAVHECLN AKLDSLAAIIEKFCEPQVAIVSLTITEKGYCIDPATGALDTSNPRIIHDLQTPEEPHS APGILVEALKRRRERGLTPFTVLSCDNIPDNGHVVKNAVLGMAEKRSPELAGWIKEHV SFPGTMVDRIVPAATDESLVEISQHLGVNDPCAISCEPFIQWVVEDNFVAGRPAWEVA GVQMVNDVLPWEEMKLRMLNGSHSFLAYLGYLSGFAHISDCMQDRAFRHAARTLMLDE QAPTLQIKDVDLTQYADKLIARFANPALKHKTWQIAMDGSQKLPQRMLAGIRIHQGRE TDWSLLALGVAGWMRYVSGVDDAGNAIDVRDPLSDKIRELVAGSSSEQRVTALLSLRE VFGDDLPDNPHFVQAIEQAWQQIVQFGAHQALLNTLKI" gene 2267829..2268815 /gene="yeiR" /locus_tag="b2173" /gene_synonym="ECK2167; JW2161" /db_xref="EcoGene:EG12104" /db_xref="GeneID:946701" CDS 2267829..2268815 /gene="yeiR" /locus_tag="b2173" /gene_synonym="ECK2167; JW2161" /function="enzyme; Not classified" /codon_start=1 /transl_table=11 /product="Zn-stimulated GTPase involved in zinc homeostasis; mutants are cadmium and EDTA sensitive; Zn(2+) binding protein" /protein_id="NP_416678.1" /db_xref="GI:16130111" /db_xref="ASAP:ABE-0007194" /db_xref="UniProtKB/Swiss-Prot:P33030" /db_xref="EcoGene:EG12104" /db_xref="GeneID:946701" /translation="MTRTNLITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFGEVGI DGALLADSGALLKEIPGGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQIL DLLTAPVYEPWIDLRATLCILDPRLLLDEKSASNENFRDQLAAADIIVANKSDRTTPE SEQALQRWWQQNGGDRQLIHSEHGKVDGHLLDLPRRNLAELPASAAHSHQHVVKKGLA ALSLPEHQRWRRSLNSGQGYQACGWIFDADTVFDTIGILEWARLAPVERVKGVLRIPE GLVRINRQGDDLHIETQNVAPPDSRIELISSSEADWNALQSALLKLRLATTA" gene 2268854..2269567 /gene="lpxT" /locus_tag="b2174" /gene_synonym="ECK2168; JW2162; yeiU" /db_xref="EcoGene:EG14075" /db_xref="GeneID:946693" CDS 2268854..2269567 /gene="lpxT" /locus_tag="b2174" /gene_synonym="ECK2168; JW2162; yeiU" /codon_start=1 /transl_table=11 /product="lipid A 1-diphosphate synthase; undecaprenyl pyrophosphate:lipid A 1-phosphate phosphotransferase" /protein_id="NP_416679.4" /db_xref="GI:90111400" /db_xref="ASAP:ABE-0007196" /db_xref="UniProtKB/Swiss-Prot:P76445" /db_xref="EcoGene:EG14075" /db_xref="GeneID:946693" /translation="MIKNLPQIVLLNIVGLALFLSWYIPVNHGFWLPIDADIFYFFNQ KLVESKAFLWLVALTNNRAFDGCSLLAMGMLMLSFWLKENAPGRRRIVIIGLVMLLTA VVLNQLGQALIPVKRASPTLTFTDINRVSELLSVPTKDASRDSFPGDHGMMLLIFSAF MWRYFGKVAGLIALIIFVVFAFPRVMIGAHWFTDIIVGSMTVILIGLPWVLLTPLSDR LITFFDKSLPGKNKHFQNK" gene 2269979..2270545 /gene="mepS" /locus_tag="b2175" /gene_synonym="ECK2169; JW2163; spr; yeiV" /db_xref="EcoGene:EG14076" /db_xref="GeneID:946686" CDS 2269979..2270545 /gene="mepS" /locus_tag="b2175" /gene_synonym="ECK2169; JW2163; spr; yeiV" /function="enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative lipoprotein" /codon_start=1 /transl_table=11 /product="murein DD-endopeptidase, space-maker hydrolase, mutational suppressor of prc thermosensitivity, outer membrane lipoprotein, weak murein LD-carboxypeptidase" /protein_id="NP_416680.1" /db_xref="GI:16130113" /db_xref="ASAP:ABE-0007200" /db_xref="UniProtKB/Swiss-Prot:P0AFV4" /db_xref="EcoGene:EG14076" /db_xref="GeneID:946686" /translation="MVKSQPILRYILRGIPAIAVAVLLSACSANNTAKNMHPETRAVG SETSSLQASQDEFENLVRNVDVKSRIMDQYADWKGVRYRLGGSTKKGIDCSGFVQRTF REQFGLELPRSTYEQQEMGKSVSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHAST SSGVIISSMNEPYWKKRYNEARRVLSRS" gene 2270726..2272282 /gene="rtn" /locus_tag="b2176" /gene_synonym="ECK2170; JW2164" /db_xref="EcoGene:EG14077" /db_xref="GeneID:946695" CDS 2270726..2272282 /gene="rtn" /locus_tag="b2176" /gene_synonym="ECK2170; JW2164" /codon_start=1 /transl_table=11 /product="resistance protein for phages lambda and N4, putative membrane-anchored cyclic-di-GMP phosphodiesterase" /protein_id="NP_416681.1" /db_xref="GI:16130114" /db_xref="ASAP:ABE-0007203" /db_xref="UniProtKB/Swiss-Prot:P76446" /db_xref="EcoGene:EG14077" /db_xref="GeneID:946695" /translation="MFIRAPNFGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYD TLITDVQKYLDTYFADLKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVKDK KTFCSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSG VFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIA GIPLTVRLYADDWTWNDVWYAFLLGGMSGTVVGLLCYYLMSVRMRPGREIMTAIKREQ FYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFEL IARDAAELEKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVLEITERD MLKEQEATQLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTET ITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLDDFVR WLKKPYTPQW" gene 2272364..2274178 /gene="yejA" /locus_tag="b2177" /gene_synonym="ECK2171; JW2165" /db_xref="EcoGene:EG12037" /db_xref="GeneID:946675" CDS 2272364..2274178 /gene="yejA" /locus_tag="b2177" /gene_synonym="ECK2171; JW2165" /GO_component="GO:0042597 - periplasmic space" /note="periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="microcin C ABC transporter periplasmic binding protein" /protein_id="NP_416682.4" /db_xref="GI:90111401" /db_xref="ASAP:ABE-0007206" /db_xref="UniProtKB/Swiss-Prot:P33913" /db_xref="EcoGene:EG12037" /db_xref="GeneID:946675" /translation="MIVRILLLFIALFTFGVQAQAIKESYAFAVLGEPRYAFNFNHFD YVNPAAPKGGQITLSALGTFDNFNRYALRGNPGARTEQLYDTLFTTSDDEPGSYYPLI AESARYADDYSWVEVAINPRARFHDGSPITARDVEFTFQKFMTEGVPQFRLVYKGTTV KAIAPLTVRIELAKPGKEDMLSLFSLPVFPEKYWKDHKLSDPLATPPLASGPYRVTSW KMGQNIVYSRVKDYWAANLPVNRGRWNFDTIRYDYYLDDNVAFEAFKAGAFDLRMEND AKNWATRYTGKNFDKKYIIKDEQKNESAQDTRWLAFNIQRPVFSDRRVREAITLAFDF EWMNKALFYNAWSRTNSYFQNTEYAARNYPDAAELVLLAPMKKDLPSEVFTQIYQPPV SKGDGYDRDNLLKADKLLNEAGWVLKGQQRVNATTGQPLSFELLLPASSNSQWVLPFQ HSLQRLGINMDIRKVDNSQITNRMRSRDYDMMPRVWRAMPWPSSDLQISWSSEYINST YNAPGVQSPVIDSLINQIIAAQGNKEKLLPLGRALDRVLTWNYYMLPMWYMAEDRLAW WDKFSQPAVRPIYSLGIDTWWYDVNKAAKLPSASKQGE" gene 2274179..2275273 /gene="yejB" /locus_tag="b2178" /gene_synonym="ECK2172; JW2166" /db_xref="EcoGene:EG12038" /db_xref="GeneID:946679" CDS 2274179..2275273 /gene="yejB" /locus_tag="b2178" /gene_synonym="ECK2172; JW2166" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport system permease protein; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="microcin C ABC transporter permease" /protein_id="NP_416683.1" /db_xref="GI:16130116" /db_xref="ASAP:ABE-0007208" /db_xref="UniProtKB/Swiss-Prot:P0AFU0" /db_xref="EcoGene:EG12038" /db_xref="GeneID:946679" /translation="MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEF GNAGVLPGAGGEGVRASHAQTGVGNISDSNYRGGRGLDPEVIAEITHRYGFDKPIHER YFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV YNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWY QKITDYLWHITLPVLATVIGGFAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWK HVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTL YIFTLIGLLLNIVSDISYTLVDPRIDFEGR" gene 2275273..2276298 /gene="yejE" /locus_tag="b2179" /gene_synonym="ECK2173; JW2167" /db_xref="EcoGene:EG12040" /db_xref="GeneID:946683" CDS 2275273..2276298 /gene="yejE" /locus_tag="b2179" /gene_synonym="ECK2173; JW2167" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport system permease protein; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="microcin C ABC transporter permease" /protein_id="NP_416684.1" /db_xref="GI:16130117" /db_xref="ASAP:ABE-0007210" /db_xref="UniProtKB/Swiss-Prot:P33915" /db_xref="EcoGene:EG12040" /db_xref="GeneID:946683" /translation="MSRLSPVNQARWARFRHNRRGYWSLWIFLVLFGLSLCSELIAND KPLLVRYDGSWYFPLLKNYSESDFGGPLASQADYQDPWLKQRLENNGWVLWAPIRFGA TSINFATNKPFPSPPSRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVL AGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSL VGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITTL TSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLGITAFLSVAILLSLLIFIGEAVRDA FDPNKAV" gene 2276300..2277889 /gene="yejF" /locus_tag="b2180" /gene_synonym="ECK2174; JW2168" /db_xref="EcoGene:EG12041" /db_xref="GeneID:946689" CDS 2276300..2277889 /gene="yejF" /locus_tag="b2180" /gene_synonym="ECK2174; JW2168" /function="putative transport; Not classified" /GO_component="GO:0005737 - cytoplasm" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="microcin C ABC transporter ATPase" /protein_id="NP_416685.1" /db_xref="GI:16130118" /db_xref="ASAP:ABE-0007212" /db_xref="UniProtKB/Swiss-Prot:P33916" /db_xref="EcoGene:EG12041" /db_xref="GeneID:946689" /translation="MTQTLLAIENLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGES GSGKSVTALSILRLLPSPPVEYLSGDIRFHGESLLHASDQTLRGVRGNKIAMIFQEPM VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLS IVRKLAHRVAVMQNGRCVEQNYAATLFASPTHPYTQKLLNSEPSGDPVPLPEPASTLL DVEQLQVAFPIRKGILKRIVDHNVVVKNISFTLRAGETLGLVGESGSGKSTTGLALLR LINSQGSIIFDGQPLQNLNRRQLLPIRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH QPTLSAAQREQQVIAVMHEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILD EPTSSLDKTVQAQILTLLKSLQQKHQLAYLFISHDLHVVRALCHQVIILRQGEVVEQG PCARVFATPQQEYTRQLLALS" gene complement(2277893..2278237) /gene="yejG" /locus_tag="b2181" /gene_synonym="ECK2175; JW2169" /db_xref="EcoGene:EG12042" /db_xref="GeneID:945319" CDS complement(2277893..2278237) /gene="yejG" /locus_tag="b2181" /gene_synonym="ECK2175; JW2169" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416686.1" /db_xref="GI:16130119" /db_xref="ASAP:ABE-0007214" /db_xref="UniProtKB/Swiss-Prot:P0AD21" /db_xref="EcoGene:EG12042" /db_xref="GeneID:945319" /translation="MTSLQLSIVHRLPQNYRWSAGFAGSKVEPIPQNGPCGDNSLVAL KLLSPDGDNAWSVMYKLSQALSDIEVPCSVLECEGEPCLFVNRQDEFAATCRLKNFGV AIAEPFSNYNPF" gene complement(2278570..2279760) /gene="bcr" /locus_tag="b2182" /gene_synonym="bicA; bicR; ECK2176; JW5363; sur; suxA" /db_xref="EcoGene:EG11419" /db_xref="GeneID:944808" CDS complement(2278570..2279760) /gene="bcr" /locus_tag="b2182" /gene_synonym="bicA; bicR; ECK2176; JW5363; sur; suxA" /function="transport; Drug/analog sensitivity" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042493 - response to drug" /note="bicyclomycin resistance protein; transmembrane protein" /codon_start=1 /transl_table=11 /product="bicyclomycin/cysteine/sulfonamide efflux transporter" /protein_id="NP_416687.1" /db_xref="GI:16130120" /db_xref="ASAP:ABE-0007221" /db_xref="UniProtKB/Swiss-Prot:P28246" /db_xref="EcoGene:EG11419" /db_xref="GeneID:944808" /translation="MTTRQHSSFAIVFILGLLAMLMPLSIDMYLPALPVISAQFGVPA GSTQMTLSTYILGFALGQLIYGPMADSFGRKPVVLGGTLVFAAAAVACALANTIDQLI VMRFFHGLAAAAASVVINALMRDIYPKEEFSRMMSFVMLVTTIAPLMAPIVGGWVLVW LSWHYIFWILALAAILASAMIFFLIKETLPPERRQPFHIRTTIGNFAALFRHKRVLSY MLASGFSFAGMFSFLSAGPFVYIEINHVAPENFGYYFALNIVFLFVMTIFNSRFVRRI GALNMFRSGLWIQFIMAAWMVISALLGLGFWSLVVGVAAFVGCVSMVSSNAMAVILDE FPHMAGTASSLAGTFRFGIGAIVGALLSLATFNSAWPMIWSIAFCATSSILFCLYASR PKKR" gene complement(2279788..2280483) /gene="rsuA" /locus_tag="b2183" /gene_synonym="ECK2177; JW2171; yejD" /db_xref="EcoGene:EG12044" /db_xref="GeneID:945378" CDS complement(2279788..2280483) /gene="rsuA" /locus_tag="b2183" /gene_synonym="ECK2177; JW2171; yejD" /EC_number="4.2.1.70" /function="enzyme; rRNA modification" /experiment="N-terminus verified by Edman degradation: PMID 7612632" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /note="16S pseudouridylate 516 synthase" /codon_start=1 /transl_table=11 /product="16S rRNA pseudouridine(516) synthase" /protein_id="NP_416688.1" /db_xref="GI:16130121" /db_xref="ASAP:ABE-0007223" /db_xref="UniProtKB/Swiss-Prot:P0AA43" /db_xref="EcoGene:EG12044" /db_xref="GeneID:945378" /translation="MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE HDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLD IDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDL TKPAVLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGE YRPLTEEEIASVV" gene 2280632..2282392 /gene="yejH" /locus_tag="b2184" /gene_synonym="ECK2178; JW2172; yejI; yejJ" /db_xref="EcoGene:EG12045" /db_xref="GeneID:945529" CDS 2280632..2282392 /gene="yejH" /locus_tag="b2184" /gene_synonym="ECK2178; JW2172; yejI; yejJ" /function="putative enzyme; Not classified" /note="putative ATP-dependent helicase" /codon_start=1 /transl_table=11 /product="putative ATP-dependent DNA or RNA helicase" /protein_id="NP_416689.1" /db_xref="GI:16130122" /db_xref="ASAP:ABE-0007228" /db_xref="UniProtKB/Swiss-Prot:P33919" /db_xref="EcoGene:EG12045" /db_xref="GeneID:945529" /translation="MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL ARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR NLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGW IYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS NGLFSEADLNRELKKQQRITPHIISQIMEFAATRKGVMIFAATVEHAKEIVGLLPAED AALITGDTPGAERDVLIENFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY QQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANT FWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE CDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSERF RLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYWQ VREKVFDYEGRFRLAHELRG" gene 2282517..2282801 /gene="rplY" /locus_tag="b2185" /gene_synonym="ECK2179; JW2173" /db_xref="EcoGene:EG10885" /db_xref="GeneID:945618" CDS 2282517..2282801 /gene="rplY" /locus_tag="b2185" /gene_synonym="ECK2179; JW2173" /function="structural component; Ribosomal proteins - synthesis, modification" /experiment="N-terminus verified by Edman degradation: PMID 1093874,1100506,9298646,9868784" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L25" /protein_id="NP_416690.1" /db_xref="GI:16130123" /db_xref="ASAP:ABE-0007231" /db_xref="UniProtKB/Swiss-Prot:P68919" /db_xref="EcoGene:EG10885" /db_xref="GeneID:945618" /translation="MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDH DKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA" repeat_region 2282887..2282920 /note="REP159 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2282940..2283947) /gene="yejK" /locus_tag="b2186" /gene_synonym="ECK2180; JW2174; ndpA" /db_xref="EcoGene:EG12048" /db_xref="GeneID:946690" CDS complement(2282940..2283947) /gene="yejK" /locus_tag="b2186" /gene_synonym="ECK2180; JW2174; ndpA" /GO_component="GO:0005737 - cytoplasm" /note="protein present in spermidine nucleoids" /codon_start=1 /transl_table=11 /product="spermidine nucleoid-associated protein" /protein_id="NP_416691.1" /db_xref="GI:16130124" /db_xref="ASAP:ABE-0007234" /db_xref="UniProtKB/Swiss-Prot:P33920" /db_xref="EcoGene:EG12048" /db_xref="GeneID:946690" /translation="MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTETVVEMVAELH RVYSAKNKAYGLFSEESELAQTLRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGF VLFCHYRYLAVEYLLVAVLSNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETN PESTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAE RQNVRQQVYSYCNEQLQAGEEIELKSLSKELAGVSEVSFTEFAAEKGYELEESFPADR STLRQLTKFAGSGGGLTINFDAMLLGERIFWDPATDTLTIKGTPPNLRDQLQRRTSGG N" gene 2284129..2284356 /gene="yejL" /locus_tag="b2187" /gene_synonym="ECK2181; JW2175" /db_xref="EcoGene:EG12043" /db_xref="GeneID:946694" CDS 2284129..2284356 /gene="yejL" /locus_tag="b2187" /gene_synonym="ECK2181; JW2175" /codon_start=1 /transl_table=11 /product="UPF0352 family protein" /protein_id="NP_416692.1" /db_xref="GI:16130125" /db_xref="ASAP:ABE-0007238" /db_xref="UniProtKB/Swiss-Prot:P0AD24" /db_xref="EcoGene:EG12043" /db_xref="GeneID:946694" /translation="MPQISRYSDEQVEQLLAELLNVLEKHKAPTDLSLMVLGNMVTNL INTSIAPAQRQAIANSFARALQSSINEDKAH" gene 2284376..2286136 /gene="yejM" /locus_tag="b2188" /gene_synonym="ECK2182; JW2176; yejN" /db_xref="EcoGene:EG12049" /db_xref="GeneID:946685" CDS 2284376..2286136 /gene="yejM" /locus_tag="b2188" /gene_synonym="ECK2182; JW2176; yejN" /function="putative enzyme; Not classified" /note="putative sulfatase" /codon_start=1 /transl_table=11 /product="essential inner membrane DUF3413 domain-containing protein; lipid A production and membrane permeability factor" /protein_id="NP_416693.1" /db_xref="GI:16130126" /db_xref="ASAP:ABE-0007240" /db_xref="UniProtKB/Swiss-Prot:P0AD27" /db_xref="EcoGene:EG12049" /db_xref="GeneID:946685" /translation="MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWP TTLAGRIYSYVSIIGHFSFLVFATYLLILFPLTFIVGSQRLMRFLSVILATAGMTLLL IDSEVFTRFHLHLNPIVWQLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKL RSLTRRRRFARPLAAFLFIAFIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFL EKHGLLDAQEYQRRLIEQGNPDAVSVQYPLSELRYRDMGTGQNVLLITVDGLNYSRFE KQMPALAGFAEQNISFTRHMSSGNTTDNGIFGLFYGISPSYMDGILSTRTPAALITAL NQQGYQLGLFSSDGFTSPLYRQALLSDFSMPSVRTQSDEQTATQWINWLGRYAQEDNR WFSWVSFNGTNIDDSNQQAFARKYSRAAGNVDDQINRVLNALRDSGKLDNTVVIITAG RGIPLSEEEETFDWSHGHLQVPLVIHWPGTPAQRINALTDHTDLMTTLMQRLLHVSTP ASEYSQGQDLFNPQRRHYWVTAADNDTLAITTPKKTLVLNNNGKYRTYNLRGERVKDE KPQLSLLLQVLTDEKRFIAN" gene 2286211..2286287 /gene="proL" /locus_tag="b2189" /gene_synonym="ECK2183; JWR0042; proW" /db_xref="EcoGene:EG30067" /db_xref="GeneID:946320" tRNA 2286211..2286287 /gene="proL" /locus_tag="b2189" /gene_synonym="ECK2183; JWR0042; proW" /product="tRNA-Pro" /note="anticodon: GGG" /db_xref="ASAP:ABE-0007242" /db_xref="EcoGene:EG30067" /db_xref="GeneID:946320" gene complement(join(2286390..2288914,2290114..2290180)) /gene="yejO" /locus_tag="b2190" /gene_synonym="ECK2184; JW5839" /pseudo /db_xref="EcoGene:EG12051" /db_xref="GeneID:946867" CDS complement(join(2286390..2288914,2290114..2290180)) /gene="yejO" /locus_tag="b2190" /gene_synonym="ECK2184; JW5839" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="pseudogene, autotransporter outer membrane homology;putative transport; Not classified; putative ATP-binding component of a transport system" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0007244" /db_xref="UniProtKB/Swiss-Prot:P33924" /db_xref="EcoGene:EG12051" /db_xref="GeneID:946867" mobile_element complement(2288919..2290113) /mobile_element_type="insertion sequence:IS5K" gene complement(2289065..2290081) /gene="insH1" /locus_tag="b2192" /gene_synonym="ECK0261" /db_xref="EcoGene:EG40008" /db_xref="GeneID:949121" CDS complement(2289065..2290081) /gene="insH1" /locus_tag="b2192" /gene_synonym="ECK0261" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS5 transposase and trans-activator" /protein_id="NP_416696.1" /db_xref="GI:16130129" /db_xref="ASAP:ABE-0007252" /db_xref="UniProtKB/Swiss-Prot:P0CE55" /db_xref="EcoGene:EG40008" /db_xref="GeneID:949121" /translation="MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQIL PWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLF ARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIE APSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQL GNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINI EYMKASIRARVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRADQMIRQW ERSH" gene 2290500..2291147 /gene="narP" /locus_tag="b2193" /gene_synonym="ECK2185; JW2181" /db_xref="EcoGene:EG11527" /db_xref="GeneID:949081" CDS 2290500..2291147 /gene="narP" /locus_tag="b2193" /gene_synonym="ECK2185; JW2181" /function="regulator; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0009061 - anaerobic respiration; GO:0006350 - transcription" /note="nitrate/nitrite response regulator (sensor NarQ)" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with NarQ" /protein_id="NP_416697.1" /db_xref="GI:16130130" /db_xref="ASAP:ABE-0007259" /db_xref="UniProtKB/Swiss-Prot:P31802" /db_xref="EcoGene:EG11527" /db_xref="GeneID:949081" /translation="MPEATPFQVMIVDDHPLMRRGVRQLLELDPGSEVVAEAGDGASA IDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALIDAG ADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELD VLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQQRGAQ" repeat_region 2291153..2291351 /note="RIP160 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site" gene complement(2291358..2292410) /gene="ccmH" /locus_tag="b2194" /gene_synonym="ECK2186; JW2182; yejP" /db_xref="EcoGene:EG12052" /db_xref="GeneID:946623" CDS complement(2291358..2292410) /gene="ccmH" /locus_tag="b2194" /gene_synonym="ECK2186; JW2182; yejP" /function="putative enzyme; Energy metabolism, carbon: Electron transport" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0017004 - cytochrome complex assembly; GO:0006457 - protein folding" /note="possible subunit of heme lyase" /codon_start=1 /transl_table=11 /product="heme lyase, CcmH subunit" /protein_id="NP_416698.1" /db_xref="GI:16130131" /db_xref="ASAP:ABE-0007262" /db_xref="UniProtKB/Swiss-Prot:P0ABM9" /db_xref="EcoGene:EG12052" /db_xref="GeneID:946623" /translation="MRFLLGVLMLMISGSALATIDVLQFKDEAQEQQFRQLTEELRCP KCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNFVTYDPPLTPLTV LLWVLPVVAIGIGGWVIYARSRRRVRVVPEAFPEQSVPEGKRAGYVVYLPGIVVALIV AGVSYYQTGNYQQVKIWQQATAQAPALLDRALDPKADPLNEEEMSRLALGMRTQLQKN PGDIEGWIMLGRVGMALGNASIATDAYATAYRLDPKNSDAALGYAEALTRSSDPNDNR LGGELLRQLVRTDHSNIRVLSMYAFNAFEQQRFGEAVAAWEMMLKLLPANDTRRAVIE RSIAQAMQHLSPQESK" gene complement(2292407..2292964) /gene="dsbE" /locus_tag="b2195" /gene_synonym="ccmG; ECK2187; JW2183; yejQ" /db_xref="EcoGene:EG12053" /db_xref="GeneID:949073" CDS complement(2292407..2292964) /gene="dsbE" /locus_tag="b2195" /gene_synonym="ccmG; ECK2187; JW2183; yejQ" /function="enzyme; Energy metabolism, carbon: Electron transport" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0017004 - cytochrome complex assembly; GO:0006457 - protein folding" /codon_start=1 /transl_table=11 /product="periplasmic thioredoxin of cytochrome c-type biogenesis" /protein_id="NP_416699.1" /db_xref="GI:16130132" /db_xref="ASAP:ABE-0007264" /db_xref="UniProtKB/Swiss-Prot:P0AA86" /db_xref="EcoGene:EG12053" /db_xref="GeneID:949073" /translation="MKRKVLLIPLIIFLAIAAALLWQLARNAEGDDPTNLESALIGKP VPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVG MNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHA GDLNPRVWEEEIKPLWEKYSKEAAQ" gene complement(2292961..2294904) /gene="ccmF" /locus_tag="b2196" /gene_synonym="ECK2188; JW2184; yejR" /db_xref="EcoGene:EG12054" /db_xref="GeneID:948783" CDS complement(2292961..2294904) /gene="ccmF" /locus_tag="b2196" /gene_synonym="ECK2188; JW2184; yejR" /function="putative enzyme; Energy metabolism, carbon: Electron transport" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0017004 - cytochrome complex assembly" /note="cytochrome c-type biogenesis protein" /codon_start=1 /transl_table=11 /product="heme lyase, CcmF subunit" /protein_id="NP_416700.1" /db_xref="GI:16130133" /db_xref="ASAP:ABE-0007269" /db_xref="UniProtKB/Swiss-Prot:P33927" /db_xref="EcoGene:EG12054" /db_xref="GeneID:948783" /translation="MMPEIGNGLLCLALGIALLLSVYPLWGVARGDARMMASSRLFAW LLFMSVAGAFLVLVNAFVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLL MSGWTFAVAIFSQRIPLDIVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRD LNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIF LTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWT LLLAISAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVIGGSLLLFAARG HKVRSRVNNALWSRESLLLANNVLLVAAMLVVLLGTLLPLVHKQLGLGSISIGEPFFN TMFTWLMVPFALLLGVGPLVRWGRDRPRKIRNLLIIAFISTLVLSLLLPWLFESKVVA MTVLGLAMACWIAVLAIAEAALRISRGTKTTFSYWGMVAAHLGLAVTIVGIAFSQNYS VERDVRMKSGDSVDIHEYRFTFRDVKEVTGPNWRGGVATIGVTRDGKPETVLYAEKRY YNTAGSMMTEAAIDGGITRDLYAALGEELENGAWAVRLYYKPFVRWIWAGGLMMALGG LLCLFDPRYRKRVSPQKTAPEAV" gene complement(2294901..2295380) /gene="ccmE" /locus_tag="b2197" /gene_synonym="ECK2189; JW2185; yejS" /db_xref="EcoGene:EG12055" /db_xref="GeneID:946697" CDS complement(2294901..2295380) /gene="ccmE" /locus_tag="b2197" /gene_synonym="ECK2189; JW2185; yejS" /function="putative enzyme; Energy metabolism, carbon: Electron transport" /experiment="N-terminus verified by Edman degradation: PMID 9770295" /GO_component="GO:0019866 - organelle inner membrane" /GO_process="GO:0017004 - cytochrome complex assembly; GO:0006457 - protein folding" /note="cytochrome c biogenesis, possible subunit of a heme lyase" /codon_start=1 /transl_table=11 /product="periplasmic heme chaperone" /protein_id="NP_416701.1" /db_xref="GI:16130134" /db_xref="ASAP:ABE-0007271" /db_xref="UniProtKB/Swiss-Prot:P69490" /db_xref="EcoGene:EG12055" /db_xref="GeneID:946697" /translation="MNIRRKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEIL YGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDL FREGQGVVVQGELEKGNHILAKEVLAKHDENYTPPEVEKAMEANHRRPASVYKDPAS" gene complement(2295377..2295586) /gene="ccmD" /locus_tag="b2198" /gene_synonym="ECK2190; JW2186; yojM" /db_xref="EcoGene:EG12169" /db_xref="GeneID:946709" CDS complement(2295377..2295586) /gene="ccmD" /locus_tag="b2198" /gene_synonym="ECK2190; JW2186; yojM" /function="transport; Protein, peptide secretion" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0017004 - cytochrome complex assembly; GO:0006457 - protein folding" /note="heme exporter protein C" /codon_start=1 /transl_table=11 /product="cytochrome c biogenesis protein; heme export ABC transporter holo-CcmE release factor" /protein_id="NP_416702.1" /db_xref="GI:16130135" /db_xref="ASAP:ABE-0007273" /db_xref="UniProtKB/Swiss-Prot:P0ABM5" /db_xref="EcoGene:EG12169" /db_xref="GeneID:946709" /translation="MTPAFASWNEFFAMGGYAFFVWLAVVMTVIPLVVLVVHSVMQHR AILRGVAQQRAREARLRAAQQQEAA" gene complement(2295583..2296320) /gene="ccmC" /locus_tag="b2199" /gene_synonym="ECK2191; JW2187; yejT; yejU" /db_xref="EcoGene:EG12057" /db_xref="GeneID:946703" CDS complement(2295583..2296320) /gene="ccmC" /locus_tag="b2199" /gene_synonym="ECK2191; JW2187; yejT; yejU" /function="transport; Protein, peptide secretion" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0017004 - cytochrome complex assembly; GO:0006457 - protein folding" /note="heme exporter protein C; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="heme export ABC transporter permease; CcmE-interacting protein" /protein_id="NP_416703.1" /db_xref="GI:16130136" /db_xref="ASAP:ABE-0007275" /db_xref="UniProtKB/Swiss-Prot:P0ABM1" /db_xref="EcoGene:EG12057" /db_xref="GeneID:946703" /translation="MWKTLHQLAIPPRLYQICGWFIPWLAIASVVVLTVGWIWGFGFA PADYQQGNSYRIIYLHVPAAIWSMGIYASMAVAAFIGLVWQMKMANLAVAAMAPIGAV FTFIALVTGSAWGKPMWGTWWVWDARLTSELVLLFLYVGVIALWHAFDDRRLAGRAAG ILVLIGVVNLPIIHYSVEWWNTLHQGSTRMQQSIDPAMRSPLRWSIFGFLLLSATLTL MRMRNLILLMEKRRPWVSELILKRGRK" gene complement(2296362..2297024) /gene="ccmB" /locus_tag="b2200" /gene_synonym="ECK2192; JW2188; yejV" /db_xref="EcoGene:EG12058" /db_xref="GeneID:946692" CDS complement(2296362..2297024) /gene="ccmB" /locus_tag="b2200" /gene_synonym="ECK2192; JW2188; yejV" /function="transport; Protein, peptide secretion" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0017004 - cytochrome complex assembly; GO:0006457 - protein folding" /note="heme exporter protein B, cytochrome c-type biogenesis protein; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="heme export ABC transporter permease" /protein_id="NP_416704.1" /db_xref="GI:16130137" /db_xref="ASAP:ABE-0007277" /db_xref="UniProtKB/Swiss-Prot:P0ABL8" /db_xref="EcoGene:EG12058" /db_xref="GeneID:946692" /translation="MMFWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQ LLARIAPGIIWVAALLSSLLALERLFRDDLQDGSLEQLMLLPLPLPAVVLAKVMAHWM VTGLPLLILSPLVAMLLGMDVYGWQVMALTLLLGTPTLGFLGAPGVALTVGLKRGGVL LSILVLPLTIPLLIFATAAMDAASMHLPVDGYLAILGALLAGTATLSPFATAAALRIS IQ" gene complement(2297021..2297644) /gene="ccmA" /locus_tag="b2201" /gene_synonym="ECK2193; JW5366; yejW" /db_xref="EcoGene:EG12059" /db_xref="GeneID:946714" CDS complement(2297021..2297644) /gene="ccmA" /locus_tag="b2201" /gene_synonym="ECK2193; JW5366; yejW" /function="transport; Protein, peptide secretion" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0017004 - cytochrome complex assembly; GO:0006457 - protein folding" /note="ATP binding protein of heme exporter A; ATP-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="heme export ABC transporter ATPase" /protein_id="NP_416705.2" /db_xref="GI:90111402" /db_xref="ASAP:ABE-0007279" /db_xref="UniProtKB/Swiss-Prot:P33931" /db_xref="EcoGene:EG12059" /db_xref="GeneID:946714" /translation="MGMLEARELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTT LLRLLTGLSRPDAGEVLWQGQPLHQVRDSYHQNLLWIGHQPGIKTRLTALENLHFYHR DGDTAQCLEALAQAGLAGFEDIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAID VNGVDRLTQRMAQHTEQGGIVILTTHQPLNVAESKIRRISLTQTRAA" gene complement(2297657..2298259) /gene="napC" /locus_tag="b2202" /gene_synonym="ECK2194; JW2190; yejX" /db_xref="EcoGene:EG12060" /db_xref="GeneID:946706" CDS complement(2297657..2298259) /gene="napC" /locus_tag="b2202" /gene_synonym="ECK2194; JW2190; yejX" /function="putative enzyme; Energy metabolism, carbon: Electron transport" /GO_component="GO:0019866 - organelle inner membrane" /GO_process="GO:0009061 - anaerobic respiration; GO:0017004 - cytochrome complex assembly" /note="cytochrome c-type protein" /codon_start=1 /transl_table=11 /product="quinol dehydrogenase, electron source for NapAB" /protein_id="NP_416706.1" /db_xref="GI:16130139" /db_xref="ASAP:ABE-0007281" /db_xref="UniProtKB/Swiss-Prot:P0ABL5" /db_xref="EcoGene:EG12060" /db_xref="GeneID:946706" /translation="MGNSDRKPGLIKRLWKWWRTPSRLALGTLLLIGFVGGIVFWGGF NTGMEKANTEEFCISCHEMRNTVYQEYMDSVHYNNRSGVRATCPDCHVPHEFVPKMIR KLKASKELYGKIFGVIDTPQKFEAHRLTMAQNEWRRMKDNNSQECRNCHNFEYMDTTA QKSVAAKMHDQAVKDGQTCIDCHKGIAHKLPDMREVEPGF" gene complement(2298269..2298718) /gene="napB" /locus_tag="b2203" /gene_synonym="ECK2195; JW5367; yejY" /db_xref="EcoGene:EG12061" /db_xref="GeneID:946698" CDS complement(2298269..2298718) /gene="napB" /locus_tag="b2203" /gene_synonym="ECK2195; JW5367; yejY" /function="carrier; Energy metabolism, carbon: Electron transport" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0009061 - anaerobic respiration; GO:0017004 - cytochrome complex assembly" /note="cytochrome c-type protein" /codon_start=1 /transl_table=11 /product="nitrate reductase, small, cytochrome C550 subunit, periplasmic" /protein_id="NP_416707.4" /db_xref="GI:90111403" /db_xref="ASAP:ABE-0007283" /db_xref="UniProtKB/Swiss-Prot:P0ABL3" /db_xref="EcoGene:EG12061" /db_xref="GeneID:946698" /translation="MKSHDLKKALCQWTAMLALVVSGAVWAANGVDFSQSPEVSGTQE GAIRMPKEQDRMPLNYVNQPPMIPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISP THFMDSDGKVGAEVAPRRYFCLQCHVPQADTAPIVGNTFTPSKGYGK" gene complement(2298715..2299578) /gene="napH" /locus_tag="b2204" /gene_synonym="ECK2196; JW2192; yejZ" /db_xref="EcoGene:EG12062" /db_xref="GeneID:945984" CDS complement(2298715..2299578) /gene="napH" /locus_tag="b2204" /gene_synonym="ECK2196; JW2192; yejZ" /function="carrier; Energy metabolism, carbon: Electron transport" /GO_function="GO:0009055 - electron carrier activity" /GO_process="GO:0009061 - anaerobic respiration" /note="ferredoxin-type protein: electron transfer" /codon_start=1 /transl_table=11 /product="ferredoxin-type protein" /protein_id="NP_416708.1" /db_xref="GI:16130141" /db_xref="ASAP:ABE-0007285" /db_xref="UniProtKB/Swiss-Prot:P33934" /db_xref="EcoGene:EG12062" /db_xref="GeneID:945984" /translation="MANRKRDAGREALEKKGWWRSHRWLVLRRLCQFFVLGMFLSGPW FGVWILHGNYSSSLLFDTVPLTDPLMTLQSLASGHLPATVALTGAVIITVLYALAGKR LFCSWVCPLNPITDLANWLRRRFDLNQSATIPRHIRYVLLVVILVGSALTGTLIWEWI NPVSLMGRSLVMGFGSGALLILALFLFDLLVVEHGWCGHICPVGALYGVLGSKGVITV AATDRQKCNRCMDCFHVCPEPHVLRAPVLDEQSPVQVTSRDCMTCGRCVDVCSEDVFT ITTRWSSGAKS" gene complement(2299565..2300260) /gene="napG" /locus_tag="b2205" /gene_synonym="ECK2197; JW2193; yojA; yojB" /db_xref="EcoGene:EG12064" /db_xref="GeneID:945544" CDS complement(2299565..2300260) /gene="napG" /locus_tag="b2205" /gene_synonym="ECK2197; JW2193; yojA; yojB" /function="carrier; Energy metabolism, carbon: Electron transport" /GO_function="GO:0009055 - electron carrier activity" /GO_process="GO:0009061 - anaerobic respiration" /note="ferredoxin-type protein: electron transfer" /codon_start=1 /transl_table=11 /product="ferredoxin-type protein" /protein_id="NP_416709.1" /db_xref="GI:16130142" /db_xref="ASAP:ABE-0007287" /db_xref="UniProtKB/Swiss-Prot:P0AAL3" /db_xref="EcoGene:EG12064" /db_xref="GeneID:945544" /translation="MSRSAKPQNGRRRFLRDVVRTAGGLAAVGVALGLQQQTARASGV RLRPPGAINENAFASACVRCGQCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMC EDIPCAKVCPSGALDREIESIDDARMGLAVLVDQENCLNFQGLRCDVCYRECPKIDEA ITLELERNTRTGKHARFLPTVHSDACTGCGKCEKVCVLEQPAIKVLPLSLAKGELGHH YRFGWLEGNNGKS" gene complement(2300267..2302753) /gene="napA" /locus_tag="b2206" /gene_synonym="ECK2198; JW2194; yojC; yojD; yojE" /db_xref="EcoGene:EG12067" /db_xref="GeneID:947093" CDS complement(2300267..2302753) /gene="napA" /locus_tag="b2206" /gene_synonym="ECK2198; JW2194; yojC; yojD; yojE" /EC_number="1.7.99.4" /function="putative enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0009061 - anaerobic respiration" /note="probable nitrate reductase 3" /codon_start=1 /transl_table=11 /product="nitrate reductase, periplasmic, large subunit" /protein_id="NP_416710.1" /db_xref="GI:16130143" /db_xref="ASAP:ABE-0007289" /db_xref="UniProtKB/Swiss-Prot:P33937" /db_xref="EcoGene:EG12067" /db_xref="GeneID:947093" /translation="MKLSRRSFMKANAVAAAAAAAGLSVPGVARAVVGQQEAIKWDKA PCRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLL RMKNGKYDKEGEFTPITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAAS KLFKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAE MHPILWSRITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYII QNNAINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVA EYTLEKTAEMTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHL LTGKISQPGCGPFSLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPS GTIPAKIGLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVS DPYPTVSALAADLILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLVQFS RRFKTEEVWPEDLLAKKPELRGKTLYEVLYATPEVSKFPVSELAEDQLNDESRELGFY LQKGLFEEYAWFGRGHGHDLAPFDDYHKARGLRWPVVNGKETQWRYSEGNDPYVKAGE GYKFYGKPDGKAVIFALPFEPAAEAPDEEYDLWLSTGRVLEHWHTGSMTRRVPELHRA FPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQGLVYMPFFDAA QLVNKLTLDATDPLSKETDFKKCAVKLEKV" gene complement(2302750..2303013) /gene="napD" /locus_tag="b2207" /gene_synonym="ECK2199; JW2195; yojF" /db_xref="EcoGene:EG12143" /db_xref="GeneID:945187" CDS complement(2302750..2303013) /gene="napD" /locus_tag="b2207" /gene_synonym="ECK2199; JW2195; yojF" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0009061 - anaerobic respiration; GO:0006464 - protein modification process" /codon_start=1 /transl_table=11 /product="assembly protein for periplasmic nitrate reductase" /protein_id="NP_416711.1" /db_xref="GI:16130144" /db_xref="ASAP:ABE-0007291" /db_xref="UniProtKB/Swiss-Prot:P0A9I5" /db_xref="EcoGene:EG12143" /db_xref="GeneID:945187" /translation="MHTNWQVCSLVVQAKSERISDISTQLNAFPGCEVAVSDAPSGQL IVVVEAEDSETLIQTIESVRNVEGVLAVSLVYHQQEEQGEETP" gene complement(2303003..2303497) /gene="napF" /locus_tag="b2208" /gene_synonym="ECK2200; JW2196; yojG" /db_xref="EcoGene:EG12068" /db_xref="GeneID:946813" CDS complement(2303003..2303497) /gene="napF" /locus_tag="b2208" /gene_synonym="ECK2200; JW2196; yojG" /function="carrier; Energy metabolism, carbon: Electron transport" /GO_function="GO:0009055 - electron carrier activity" /GO_process="GO:0009061 - anaerobic respiration" /note="ferredoxin-type protein: electron transfer" /codon_start=1 /transl_table=11 /product="ferredoxin-type protein, role in electron transfer to periplasmic nitrate reductase NapA" /protein_id="NP_416712.1" /db_xref="GI:16130145" /db_xref="ASAP:ABE-0007293" /db_xref="UniProtKB/Swiss-Prot:P0AAL0" /db_xref="EcoGene:EG12068" /db_xref="GeneID:946813" /translation="MKIDASRRGILTGRWRKASNGIRPPWSGDESHFLTHCTRCDACI NACENNILQRGAGGYPSVNFKNNECSFCYACAQACPESLFSPRHTRAWDLQFTIGDAC LAYQSVECRRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAITAEY LHAH" gene 2303905..2304393 /gene="eco" /locus_tag="b2209" /gene_synonym="ECK2201; eti; JW2197" /db_xref="EcoGene:EG10255" /db_xref="GeneID:946700" CDS 2303905..2304393 /gene="eco" /locus_tag="b2209" /gene_synonym="ECK2201; eti; JW2197" /function="regulator; Degradation of proteins, peptides, glyco" /GO_component="GO:0042597 - periplasmic space" /codon_start=1 /transl_table=11 /product="ecotin, a serine protease inhibitor" /protein_id="NP_416713.1" /db_xref="GI:16130146" /db_xref="ASAP:ABE-0007297" /db_xref="UniProtKB/Swiss-Prot:P23827" /db_xref="EcoGene:EG10255" /db_xref="GeneID:946700" /translation="MKTILPAVLFAAFATTSAWAAESVQPLEKIAPYPQAEKGMKRQV IQLTPQEDESTLKVELLIGQTLEVDCNLHRLGGKLENKTLEGWGYDYYVFDKVSSPVS TMMACPDGKKEKKFVTAYLGDAGMLRYNSKLPIVVYTPDNVDVKYRVWKAEEKIDNAV VR" repeat_region 2304417..2305071 /note="REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences" gene complement(2305108..2306754) /gene="mqo" /locus_tag="b2210" /gene_synonym="ECK2202; JW2198; yojH" /db_xref="EcoGene:EG12069" /db_xref="GeneID:946702" CDS complement(2305108..2306754) /gene="mqo" /locus_tag="b2210" /gene_synonym="ECK2202; JW2198; yojH" /EC_number="1.1.5.4" /GO_process="GO:0006099 - tricarboxylic acid cycle" /codon_start=1 /transl_table=11 /product="malate dehydrogenase, FAD/NAD(P)-binding domain" /protein_id="NP_416714.1" /db_xref="GI:16130147" /db_xref="ASAP:ABE-0007300" /db_xref="UniProtKB/Swiss-Prot:P33940" /db_xref="EcoGene:EG12069" /db_xref="GeneID:946702" /translation="MKKVTAMLFSMAVGLNAVSMAAKAKASEEQETDVLLIGGGIMSA TLGTYLRELEPEWSMTMVERLEGVAQESSNGWNNAGTGHSALMELNYTPQNADGSISI EKAVAINEAFQISRQFWAHQVERGVLRTPRSFINTVPHMSFVWGEDNVNFLRARYAAL QQSSLFRGMRYSEDHAQIKEWAPLVMEGRDPQQKVAATRTEIGTDVNYGEITRQLIAS LQKKSNFSLQLSSEVRALKRNDDNTWTVTVADLKNGTAQNIRAKFVFIGAGGAALKLL QESGIPEAKDYAGFPVGGQFLVSENPDVVNHHLAKVYGKASVGAPPMSVPHIDTRVLD GKRVVLFGPFATFSTKFLKNGSLWDLMSSTTTSNVMPMMHVGLDNFDLVKYLVSQVML SEEDRFEALKEYYPQAKKEDWRLWQAGQRVQIIKRDAEKGGVLRLGTEVVSDQQGTIA ALLGASPGASTAAPIMLNLLEKVFGDRVSSPQWQATLKAIVPSYGRKLNGDVAATERE LQYTSEVLGLNYDKPQAADSTPKPQLKPQPVQKEVADIAL" gene complement(2306972..2308615) /gene="yojI" /locus_tag="b2211" /gene_synonym="ECK2203; JW2199; yojJ" /db_xref="EcoGene:EG12070" /db_xref="GeneID:946705" CDS complement(2306972..2308615) /gene="yojI" /locus_tag="b2211" /gene_synonym="ECK2203; JW2199; yojJ" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="microcin J25 efflux ABC transporter permease/ATPase" /protein_id="NP_416715.1" /db_xref="GI:16130148" /db_xref="ASAP:ABE-0007303" /db_xref="UniProtKB/Swiss-Prot:P33941" /db_xref="EcoGene:EG12070" /db_xref="GeneID:946705" /translation="MELLVLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETA DTSLLVLPEFLGLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQL GSASLLAGLTSDVRNITIAFVRLPELVQGIILTIGSAAYLWMLSGKMLLVTAIWMAIT IWGGFVLVARVYKHMATLRETEDKLYTDFQTVLEGRKELTLNRERAEYVFNNLYIPDA QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFWMANSLGWADTNVAATYSLTLLFLR TPLLSAVGALPTLLTAQVAFNKLNKFALAPFKAEFPRPQAFPNWQTLELRNVTFAYQD NAFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSGEQP EDYRKLFSAVFTDVWLFDQLLGPEGKPANPQLVEKWLAQLKMAHKLELSNGRIVNLKL SKGQKKRVALLLALAEERDIILLDEWAADQDPHFRREFYQVLLPLMQEMGKTIFAISH DDHYFIHADRLLEMRNGQLSELTGEERDAASRDAVARTA" gene complement(2308691..2309341) /gene="alkB" /locus_tag="b2212" /gene_synonym="aidD; ECK2204; JW2200" /db_xref="EcoGene:EG10037" /db_xref="GeneID:946708" CDS complement(2308691..2309341) /gene="alkB" /locus_tag="b2212" /gene_synonym="aidD; ECK2204; JW2200" /function="putative enzyme; DNA - replication, repair, restriction/modification" /experiment="N-terminus verified by Edman degradation: PMID 3536913" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006281 - DNA repair" /note="DNA repair system specific for alkylated DNA" /codon_start=1 /transl_table=11 /product="oxidative demethylase of N1-methyladenine or N3-methylcytosine DNA lesions" /protein_id="NP_416716.1" /db_xref="GI:16130149" /db_xref="ASAP:ABE-0007308" /db_xref="UniProtKB/Swiss-Prot:P05050" /db_xref="EcoGene:EG10037" /db_xref="GeneID:946708" /translation="MLDLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQS PFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHNLCQR AATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLK RNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTIDCRYNLTFRQAGKKE" gene complement(2309341..2310405) /gene="ada" /locus_tag="b2213" /gene_synonym="ECK2205; JW2201" /db_xref="EcoGene:EG10029" /db_xref="GeneID:946710" CDS complement(2309341..2310405) /gene="ada" /locus_tag="b2213" /gene_synonym="ECK2205; JW2201" /EC_number="2.1.1.63" /function="enzyme; DNA - replication, repair, restriction/modification" /experiment="N-terminus verified by Edman degradation: PMID 2987251" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006281 - DNA repair; GO:0006350 - transcription" /note="O6-methylguanine-DNA methyltransferase; transcription activator/repressor" /codon_start=1 /transl_table=11 /product="fused DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase" /protein_id="NP_416717.1" /db_xref="GI:16130150" /db_xref="ASAP:ABE-0007311" /db_xref="UniProtKB/Swiss-Prot:P06134" /db_xref="EcoGene:EG10029" /db_xref="GeneID:946710" /translation="MKKATCLTDDQRWQSVLARDPNADGEFVFAVRTTGIFCRPSCRA RHALRENVSFYANASEALAAGFRPCKRCQPEKANAQQHRLDKITHACRLLEQETPVTL EALADQVAMSPFHLHRLFKATTGMTPKAWQQAWRARRLRESLAKGESVTTSILNAGFP DSSSYYRKADETLGMTAKQFRHGGENLAVRYALADCELGRCLVAESERGICAILLGDD DATLISELQQMFPAADNAPADLMFQQHVREVIASLNQRDTPLTLPLDIRGTAFQQQVW QALRTIPCGETVSYQQLANAIGKPKAVRAVASACAANKLAIIIPCHRVVRGDGTLSGY RWGVSRKAQLLRREAENEER" gene complement(2310479..2311534) /gene="apbE" /locus_tag="b2214" /gene_synonym="ECK2206; JW5368; yojK; yojL" /db_xref="EcoGene:EG12073" /db_xref="GeneID:946711" CDS complement(2310479..2311534) /gene="apbE" /locus_tag="b2214" /gene_synonym="ECK2206; JW5368; yojK; yojL" /GO_process="GO:0009228 - thiamin biosynthetic process" /codon_start=1 /transl_table=11 /product="putative thiamine-synthetic flavin transferase lipoprotein" /protein_id="NP_416718.1" /db_xref="GI:16130151" /db_xref="ASAP:ABE-0007317" /db_xref="UniProtKB/Swiss-Prot:P0AB85" /db_xref="EcoGene:EG12073" /db_xref="GeneID:946711" /translation="MEISFTRVALLAAALFFVGCDQKPQPAKTHATEVTVLEGKTMGT FWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEA MADIVTTSLRIGAKTDGAMDITVGPLVNLWGFGPEQQPVQIPSQEQIDAMKAKTGLQH LTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSR GMNGEGLPWRVAIQKPTDKENAVQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQ TGRPIEHNLVSVTVIAPTALEADAWDTGLMVLGPEKAKEVVRREGLAVYMITKEGDSF KTWMSPQFKSFLVSEKN" gene complement(2311646..2312749) /gene="ompC" /locus_tag="b2215" /gene_synonym="butR; ECK2207; JW2203; meoA; par" /db_xref="EcoGene:EG10670" /db_xref="GeneID:946716" CDS complement(2311646..2312749) /gene="ompC" /locus_tag="b2215" /gene_synonym="butR; ECK2207; JW2203; meoA; par" /function="membrane; Outer membrane constituents" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="outer membrane protein 1b (Ib;c)" /codon_start=1 /transl_table=11 /product="outer membrane porin protein C" /protein_id="NP_416719.1" /db_xref="GI:16130152" /db_xref="ASAP:ABE-0007321" /db_xref="UniProtKB/Swiss-Prot:P06996" /db_xref="EcoGene:EG10670" /db_xref="GeneID:946716" /translation="MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYF SDNKDVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLK FQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFGL VDGLNFAVQYQGKNGNPSGEGFTSGVTNNGRDALRQNGDGVGGSITYDYEGFGIGGAI SSSKRTDAQNTAAYIGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSLGWANK AQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGRGYDDEDILKYVDVGATYYFNKNMSTY VDYKINLLDDNQFTRDAGINTDNIVALGLVYQF" gene 2313084..2313176 /gene="micF" /locus_tag="b4439" /gene_synonym="ECK2208; IS113; JWR0043; stc" /db_xref="EcoGene:EG30063" /db_xref="GeneID:2847742" ncRNA 2313084..2313176 /ncRNA_class="antisense_RNA" /gene="micF" /locus_tag="b4439" /gene_synonym="ECK2208; IS113; JWR0043; stc" /product="sRNA antisense regulator affecting ompF expression, Hfq-dependent" /note="regulatory antisense RNA affecting ompF expression; member of soxRS regulon" /db_xref="ASAP:ABE-0047259" /db_xref="EcoGene:EG30063" /db_xref="GeneID:2847742" gene 2313488..2316160 /gene="rcsD" /locus_tag="b2216" /gene_synonym="ECK2209; JW2204; yojN; yojP; yojQ" /db_xref="EcoGene:EG12385" /db_xref="GeneID:946717" CDS 2313488..2316160 /gene="rcsD" /locus_tag="b2216" /gene_synonym="ECK2209; JW2204; yojN; yojP; yojQ" /function="putative regulator; Not classified" /GO_process="GO:0006464 - protein modification process" /note="putative 2-component sensor protein" /codon_start=1 /transl_table=11 /product="phosphotransfer intermediate protein in two-component regulatory system with RcsBC" /protein_id="NP_416720.1" /db_xref="GI:16130153" /db_xref="ASAP:ABE-0007330" /db_xref="UniProtKB/Swiss-Prot:P39838" /db_xref="EcoGene:EG12385" /db_xref="GeneID:946717" /translation="MRQKETTATTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNA WLKDKSYQIVDITHAIQKRVDNWRYVTWQIYDNIAATTSPSSGEGLQETRLKQDVYYL EKPRRKTEALIFGSHDNSTLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLVLIST LPLKDLTSGFKESTVSDIVDSRRAEMLQQANALDERESFSNMRRLAWQNGHYFTLRTT FNQPGHLATVVAFDLPINDLIPPGMPLDSFRLEPDATATGNNDNEKEGTDSVSIHFNS TKIEISSALNSTDMRLVWQVPYGTLLLDTLQNILLPLLLNIGLLALALFGYTTFRHFS SRSTENVPSTAVNNELRILRAINEEIVSLLPLGLLVHDQESNRTVISNKIADHLLPHL NLQNITTMAEQHQGIIQATINNELYEIRMFRSQVAPRTQIFIIRDQDREVLVNKKLKQ AQRLYEKNQQGRMIFMKNIGDALKEPAQSLAESAAKLNAPESKQLANQADVLVRLVDE IQLANMLADDSWKSETVLFSVQDLIDEVVPSVLPAIKRKGLQLLINNHLKAHDMRRGD RDALRRILLLLMQYAVTSTQLGKITLEVDQDESSEDRLTFRILDTGEGVSIHEMDNLH FPFINQTQNDRYGKADPLAFWLSDQLARKLGGHLNIKTRDGLGTRYSVHIKMLAADPE VEEEEERLLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDERLISQDYDIFLTDNP SNLTASGLLLSDDESGVREIGPGQLCVNFNMSNAMQEAVLQLIEVQLAQEEVTESPLG GDENAQLHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPG KQLCETLEHLIREKDVPGIEKYISDIDSYVKSLL" gene 2316177..2316827 /gene="rcsB" /locus_tag="b2217" /gene_synonym="ECK2210; JW2205; viaA" /db_xref="EcoGene:EG10821" /db_xref="GeneID:947441" CDS 2316177..2316827 /gene="rcsB" /locus_tag="b2217" /gene_synonym="ECK2210; JW2205; viaA" /function="regulator; Surface polysaccharides & antigens" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting; GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0009242 - colanic acid biosynthetic process; GO:0006350 - transcription" /note="positive response regulator for colanic capsule biosynthesis, (sensor, RcsC)" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with RcsC and YojN" /protein_id="NP_416721.1" /db_xref="GI:16130154" /db_xref="ASAP:ABE-0007333" /db_xref="UniProtKB/Swiss-Prot:P69407" /db_xref="EcoGene:EG10821" /db_xref="GeneID:947441" /translation="MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINN LPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLD IEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR LFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIALLNYLSSVTLSPADKD" repeat_region 2316834..2317030 /note="RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site" gene complement(2317027..2319876) /gene="rcsC" /locus_tag="b2218" /gene_synonym="ECK2211; JW5917; JW5920" /db_xref="EcoGene:EG10822" /db_xref="GeneID:948993" CDS complement(2317027..2319876) /gene="rcsC" /locus_tag="b2218" /gene_synonym="ECK2211; JW5917; JW5920" /function="enzyme; Surface polysaccharides & antigens" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009242 - colanic acid biosynthetic process; GO:0006464 - protein modification process" /note="sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB" /codon_start=1 /transl_table=11 /product="hybrid sensory kinase in two-component regulatory system with RcsB and YojN" /protein_id="NP_416722.2" /db_xref="GI:145698285" /db_xref="ASAP:ABE-0007336" /db_xref="UniProtKB/Swiss-Prot:P14376" /db_xref="EcoGene:EG10822" /db_xref="GeneID:948993" /translation="MKYLASFRTTLKASRYMFRALALVLWLLIAFSSVFYIVNALHQR ESEIRQEFNLSSDQAQRFIQRTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAF EPLFADSDCSAMSNTWRGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGL RDMPVERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANR LQALLGVEQTIRMENFFLPGTLPMGVTILDENGHTLISLTGPESKIKGDPRWMQERSW FGYTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLA RMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLN MLTHEDRQRLTQIICGQQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRV KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLV TAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDT GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS QFTVRIPLYGAQYPQKKGVEGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQE PTPEDVLITDEVVSKKWQGRAVVTFCRRHIGIPLEKAPGEWVHSVAAPHELPALLARI YLIEMESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTAND GVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRC LESGMDSCLSKPVTLDVIKQTLTLYAERVRKSRDS" gene 2320043..2321869 /gene="atoS" /locus_tag="b2219" /gene_synonym="ECK2212; JW2213" /db_xref="EcoGene:EG11667" /db_xref="GeneID:949011" CDS 2320043..2321869 /gene="atoS" /locus_tag="b2219" /gene_synonym="ECK2212; JW2213" /function="regulator; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0019395 - fatty acid oxidation; GO:0006464 - protein modification process" /note="sensor protein AtoS for response regulator AtoC" /codon_start=1 /transl_table=11 /product="sensory histidine kinase in two-component regulatory system with AtoC" /protein_id="NP_416723.1" /db_xref="GI:16130156" /db_xref="ASAP:ABE-0007341" /db_xref="UniProtKB/Swiss-Prot:Q06067" /db_xref="EcoGene:EG11667" /db_xref="GeneID:949011" /translation="MHYMKWIYPRRLRNQMILMAILMVIVPTLTIGYIVETEGRSAVL SEKEKKLSAVVNLLNQALGDRYDLYIDLPREERIRALNAELAPITENITHAFPGIGAG YYNKMLDAIITYAPSALYQNNVGVTIAADHPGREVMRTNTPLVYSGRQVRGDILNSML PIERNGEILGYIWANELTEDIRRQAWKMDVRIIIVLTAGLLISLLLIVLFSRRLSANI DIITDGLSTLAQNIPTRLPQLPGEMGQISQSVNNLAQALRETRTLNDLIIENAADGVI AIDRQGDVTTMNPAAEVITGYQRHELVGQPYSMLFDNTQFYSPVLDTLEHGTEHVALE ISFPGRDRTIELSVTTSRIHNTHGEMIGALVIFSDLTARKETQRRMAQAERLATLGEL MAGVAHEVRNPLTAIRGYVQILRQQTSDPIHQEYLSVVLKEIDSINKVIQQLLEFSRP RHSQWQQVSLNALVEETLVLVQTAGVQARVDFISELDNELSPINADRELLKQVLLNIL INAVQAISARGKIRIQTWQYSDSQQAISIEDNGCGIDLSLQKKIFDPFFTTKASGTGL GLALSQRIINAHQGDIRVASLPGYGATFTLILPINPQGNQTV" gene 2321866..2323251 /gene="atoC" /locus_tag="b2220" /gene_synonym="Az; ECK2213; JW2214" /db_xref="EcoGene:EG11668" /db_xref="GeneID:947444" CDS 2321866..2323251 /gene="atoC" /locus_tag="b2220" /gene_synonym="Az; ECK2213; JW2214" /function="regulator; Degradation of small molecules: Fatty acids" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0019395 - fatty acid oxidation; GO:0006596 - polyamine biosynthetic process; GO:0006350 - transcription" /note="response regulator of ato, ornithine decarboxylase antizyme (sensor ATOS)" /codon_start=1 /transl_table=11 /product="fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein" /protein_id="NP_416724.1" /db_xref="GI:16130157" /db_xref="ASAP:ABE-0007343" /db_xref="UniProtKB/Swiss-Prot:Q06065" /db_xref="EcoGene:EG11668" /db_xref="GeneID:947444" /translation="MTAINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF ADIHPDVVLMDIRMPEMDGIKALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDY VIKPFDLDELNLIVQRALQLQSMKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTA KIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHE KGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIK VDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKF SSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPIIFSEDLPPQIRQ PVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGISRRALMYK LQEYGIDPADV" gene 2323447..2324109 /gene="atoD" /locus_tag="b2221" /gene_synonym="ECK2214; JW2215" /db_xref="EcoGene:EG11669" /db_xref="GeneID:947525" CDS 2323447..2324109 /gene="atoD" /locus_tag="b2221" /gene_synonym="ECK2214; JW2215" /EC_number="2.8.3.8" /function="enzyme; Degradation of small molecules: Fatty acids" /GO_process="GO:0019395 - fatty acid oxidation" /note="acetyl-CoA:acetoacetyl-CoA transferase alpha subunit" /codon_start=1 /transl_table=11 /product="acetyl-CoA:acetoacetyl-CoA transferase, alpha subunit" /protein_id="NP_416725.1" /db_xref="GI:16130158" /db_xref="ASAP:ABE-0007347" /db_xref="UniProtKB/Swiss-Prot:P76458" /db_xref="EcoGene:EG11669" /db_xref="GeneID:947525" /translation="MKTKLMTLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLESGV RDLTLIANDTAFVDTGIGPLIVNGRVRKVIASHIGTNPETGRRMISGEMDVVLVPQGT LIEQIRCGGAGLGGFLTPTGVGTVVEEGKQTLTLDGKTWLLERPLRADLALIRAHRCD TLGNLTYQLSARNFNPLIALAADITLVEPDELVETGELQPDHIVTPGAVIDHIIVSQE SK" gene 2324109..2324759 /gene="atoA" /locus_tag="b2222" /gene_synonym="ECK2215; JW2216" /db_xref="EcoGene:EG11670" /db_xref="GeneID:946719" CDS 2324109..2324759 /gene="atoA" /locus_tag="b2222" /gene_synonym="ECK2215; JW2216" /EC_number="2.8.3.8" /function="enzyme; Degradation of small molecules: Fatty acids" /GO_process="GO:0019395 - fatty acid oxidation" /note="acetyl-CoA:acetoacetyl-CoA transferase beta subunit" /codon_start=1 /transl_table=11 /product="acetyl-CoA:acetoacetyl-CoA transferase, beta subunit" /protein_id="NP_416726.1" /db_xref="GI:16130159" /db_xref="ASAP:ABE-0007349" /db_xref="UniProtKB/Swiss-Prot:P76459" /db_xref="EcoGene:EG11670" /db_xref="GeneID:946719" /translation="MDAKQRIARRVAQELRDGDIVNLGIGLPTMVANYLPEGIHITLQ SENGFLGLGPVTTAHPDLVNAGGQPCGVLPGAAMFDSAMSFALIRGGHIDACVLGGLQ VDEEANLANWVVPGKMVPGMGGAMDLVTGSRKVIIAMEHCAKDGSAKILRRCTMPLTA QHAVHMLVTELAVFRFIDGKMWLTEIADGCDLATVRAKTEARFEVAADLNTQRGDL" gene 2324756..2326078 /gene="atoE" /locus_tag="b2223" /gene_synonym="ECK2216; JW2217" /db_xref="EcoGene:EG11671" /db_xref="GeneID:946721" CDS 2324756..2326078 /gene="atoE" /locus_tag="b2223" /gene_synonym="ECK2216; JW2217" /function="transport; Degradation of small molecules: Fatty acids" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0019395 - fatty acid oxidation" /codon_start=1 /transl_table=11 /product="short chain fatty acid transporter" /protein_id="NP_416727.1" /db_xref="GI:16130160" /db_xref="ASAP:ABE-0007353" /db_xref="UniProtKB/Swiss-Prot:P76460" /db_xref="EcoGene:EG11671" /db_xref="GeneID:946721" /translation="MIGRISRFMTRFVSRWLPDPLIFAMLLTLLTFVIALWLTPQTPI SMVKMWGDGFWNLLAFGMQMALIIVTGHALASSAPVKSLLRTAASAAKTPVQGVMLVT FFGSVACVINWGFGLVVGAMFAREVARRVPGSDYPLLIACAYIGFLTWGGGFSGSMPL LAATPGNPVEHIAGLIPVGDTLFSGFNIFITVALIVVMPFITRMMMPKPSDVVSIDPK LLMEEADFQKQLPKDAPPSERLEESRILTLIIGALGIAYLAMYFSEHGFNITINTVNL MFMIAGLLLHKTPMAYMRAISAAARSTAGILVQFPFYAGIQLMMEHSGLGGLITEFFI NVANKDTFPVMTFFSSALINFAVPSGGGHWVIQGPFVIPAAQALGADLGKSVMAIAYG EQWMNMAQPFWALPALAIAGLGVRDIMGYCITALLFSGVIFVIGLTLF" gene 2326109..2327293 /gene="atoB" /locus_tag="b2224" /gene_synonym="ECK2217; JW2218" /db_xref="EcoGene:EG11672" /db_xref="GeneID:946727" CDS 2326109..2327293 /gene="atoB" /locus_tag="b2224" /gene_synonym="ECK2217; JW2218" /EC_number="2.3.1.9" /function="enzyme; Degradation of small molecules: Fatty acids" /GO_process="GO:0019395 - fatty acid oxidation" /codon_start=1 /transl_table=11 /product="acetyl-CoA acetyltransferase" /protein_id="NP_416728.1" /db_xref="GI:16130161" /db_xref="ASAP:ABE-0007355" /db_xref="UniProtKB/Swiss-Prot:P76461" /db_xref="EcoGene:EG11672" /db_xref="GeneID:946727" /translation="MKNCVIVSAVRTAIGSFNGSLASTSAIDLGATVIKAAIERAKID SQHVDEVIMGNVLQAGLGQNPARQALLKSGLAETVCGFTVNKVCGSGLKSVALAAQAI QAGQAQSIVAGGMENMSLAPYLLDAKARSGYRLGDGQVYDVILRDGLMCATHGYHMGI TAENVAKEYGITREMQDELALHSQRKAAAAIESGAFTAEIVPVNVVTRKKTFVFSQDE FPKANSTAEALGALRPAFDKAGTVTAGNASGINDGAAALVIMEESAALAAGLTPLARI KSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAAQFLAVGKNLGFD SEKVNVNGGAIALGHPIGASGARILVTLLHAMQARDKTLGLATLCIGGGQGIAMVIER LN" gene complement(2327367..2328143) /gene="yfaP" /locus_tag="b2225" /gene_synonym="ECK2218; JW2219" /db_xref="EcoGene:EG14078" /db_xref="GeneID:946728" CDS complement(2327367..2328143) /gene="yfaP" /locus_tag="b2225" /gene_synonym="ECK2218; JW2219" /codon_start=1 /transl_table=11 /product="DUF2135 family protein, putative host defense protein" /protein_id="NP_416729.1" /db_xref="GI:16130162" /db_xref="ASAP:ABE-0007357" /db_xref="UniProtKB/Swiss-Prot:P76462" /db_xref="EcoGene:EG14078" /db_xref="GeneID:946728" /translation="MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASF SQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSF ARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHV VTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPIHGRYQVYINYYGGRSETE LTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW" gene complement(2328148..2329797) /gene="yfaQ" /locus_tag="b2226" /gene_synonym="ECK2219; JW2220" /db_xref="EcoGene:EG14079" /db_xref="GeneID:946730" CDS complement(2328148..2329797) /gene="yfaQ" /locus_tag="b2226" /gene_synonym="ECK2219; JW2220" /codon_start=1 /transl_table=11 /product="tandem DUF2300 domain protein, putative host defense protein" /protein_id="NP_416730.1" /db_xref="GI:16130163" /db_xref="ASAP:ABE-0007359" /db_xref="UniProtKB/Swiss-Prot:P76463" /db_xref="EcoGene:EG14079" /db_xref="GeneID:946730" /translation="MNWRRIVWLLALVTLPTLAEETPLQLVLRGAQHDQLYQLSSSGV TKVSALPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRD TALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLA TLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTD GTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKST TAVNPGVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDRE AKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWT QDLIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRS TCQLLPKAKAWLAKKMPQWRRILQAETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRN FFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD" gene complement(2329798..2334402) /gene="yfaS" /locus_tag="b4500" /gene_synonym="ECK2220; JW2221; JW2222; yfaR" /pseudo /db_xref="EcoGene:EG14081" /db_xref="GeneID:1450231" CDS complement(2329798..2334402) /gene="yfaS" /locus_tag="b4500" /gene_synonym="ECK2220; JW2221; JW2222; yfaR" /note="pseudogene, bacterial alpha2-macroglobulin YfaS variant family; putative membrane protein" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0007362" /db_xref="ASAP:ABE-0007364" /db_xref="ASAP:ABE-0285101" /db_xref="UniProtKB/Swiss-Prot:P76464" /db_xref="EcoGene:EG14081" /db_xref="GeneID:1450231" gene complement(2334336..2334959) /gene="yfaT" /locus_tag="b2229" /gene_synonym="ECK2221; JW2223" /db_xref="EcoGene:EG14082" /db_xref="GeneID:946622" CDS complement(2334336..2334959) /gene="yfaT" /locus_tag="b2229" /gene_synonym="ECK2221; JW2223" /codon_start=1 /transl_table=11 /product="DUF1175 family protein, putative host defense protein" /protein_id="NP_416732.4" /db_xref="GI:90111404" /db_xref="ASAP:ABE-0007366" /db_xref="UniProtKB/Swiss-Prot:P76466" /db_xref="EcoGene:EG14082" /db_xref="GeneID:946622" /translation="MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQ GPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNW NQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYH TGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR" gene complement(2334956..2336644) /gene="yfaA" /locus_tag="b2230" /gene_synonym="ECK2222; JW2224; pufY" /db_xref="EcoGene:EG11142" /db_xref="GeneID:946618" CDS complement(2334956..2336644) /gene="yfaA" /locus_tag="b2230" /gene_synonym="ECK2222; JW2224; pufY" /codon_start=1 /transl_table=11 /product="DUF2138 family protein, putative host defense protein" /protein_id="NP_416733.4" /db_xref="GI:90111405" /db_xref="ASAP:ABE-0007368" /db_xref="UniProtKB/Swiss-Prot:P17994" /db_xref="EcoGene:EG11142" /db_xref="GeneID:946618" /translation="MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSP LVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIE GSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPL LFAATSDSQLSKTEISSIKINSETVPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFK DDQQDTEATAIAGDLLSGKKRWQASFGLEERTAEKTPVRQRIVVSARWLGFGYQRLMP SFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAE EMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNI GAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLA MQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGIAKLLRNETLT SLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL" gene complement(2336793..2339420) /gene="gyrA" /locus_tag="b2231" /gene_synonym="ECK2223; hisW; JW2225; nalA; nfxA; norA; parD" /db_xref="EcoGene:EG10423" /db_xref="GeneID:946614" CDS complement(2336793..2339420) /gene="gyrA" /locus_tag="b2231" /gene_synonym="ECK2223; hisW; JW2225; nalA; nfxA; norA; parD" /EC_number="5.99.1.3" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication; GO:0006350 - transcription" /note="DNA gyrase, subunit A, type II topoisomerase" /codon_start=1 /transl_table=11 /product="DNA gyrase (type II topoisomerase), subunit A" /protein_id="NP_416734.1" /db_xref="GI:16130166" /db_xref="ASAP:ABE-0007370" /db_xref="UniProtKB/Swiss-Prot:P0AES4" /db_xref="EcoGene:EG10423" /db_xref="GeneID:946614" /translation="MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPV HRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYML VDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMP TKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFP TAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEK IAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINM VALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDP IIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYL TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELEL VREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKG KSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLP LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDEL IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRG DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMI TDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAA EGDDEIAPEVDVDDEPEEE" gene 2339567..2340289 /gene="ubiG" /locus_tag="b2232" /gene_synonym="ECK2224; JW2226; pufX; yfaB" /db_xref="EcoGene:EG11143" /db_xref="GeneID:946607" CDS 2339567..2340289 /gene="ubiG" /locus_tag="b2232" /gene_synonym="ECK2224; JW2226; pufX; yfaB" /EC_number="2.1.1.64" /function="enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009060 - aerobic respiration" /note="3-demethylubiquinone-9 3-methyltransferase and 2-octaprenyl-6-hydroxy phenol methylase" /codon_start=1 /transl_table=11 /product="bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase" /protein_id="NP_416735.1" /db_xref="GI:16130167" /db_xref="ASAP:ABE-0007374" /db_xref="UniProtKB/Swiss-Prot:P17993" /db_xref="EcoGene:EG11143" /db_xref="GeneID:946607" /translation="MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLR LGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESG IQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTL NRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNP ITNTFKLGPGVDVNYMLHTQNK" repeat_region 2340313..2340394 /note="REP163 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(2340417..2344169) /gene="yfaL" /locus_tag="b2233" /gene_synonym="ECK2225; JW2227; yfaF; yfaJ; yfaK" /db_xref="EcoGene:EG12850" /db_xref="GeneID:946595" CDS complement(2340417..2344169) /gene="yfaL" /locus_tag="b2233" /gene_synonym="ECK2225; JW2227; yfaF; yfaJ; yfaK" /function="putative transport; Not classified" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="adhesin" /protein_id="NP_416736.1" /db_xref="GI:16130168" /db_xref="ASAP:ABE-0007377" /db_xref="UniProtKB/Swiss-Prot:P45508" /db_xref="EcoGene:EG12850" /db_xref="GeneID:946595" /translation="MRIIFLRKEYLSLLPSMIASLFSANGVAAVTDSCQGYDVKASCQ ASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSLLPENETGMTLFAN NTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNA MFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSK HPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSA AGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSG DLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQN QAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSY VLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQS GTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANN NSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHG RDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSA VRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVLR LTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNT SGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVN SITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLR SQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAF MMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEW MLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYA WFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAA NRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAV KQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW" gene 2344865..2347150 /gene="nrdA" /locus_tag="b2234" /gene_synonym="dnaF; ECK2226; JW2228" /db_xref="EcoGene:EG10660" /db_xref="GeneID:946612" CDS 2344865..2347150 /gene="nrdA" /locus_tag="b2234" /gene_synonym="dnaF; ECK2226; JW2228" /EC_number="1.17.4.1" /function="enzyme; 2'-Deoxyribonucleotide metabolism" /experiment="N-terminus verified by Edman degradation: PMID 3894026" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /note="ribonucleoside diphosphate reductase 1, alpha subunit, B1" /codon_start=1 /transl_table=11 /product="ribonucleoside-diphosphate reductase 1, alpha subunit" /protein_id="NP_416737.1" /db_xref="GI:16130169" /db_xref="ASAP:ABE-0007383" /db_xref="UniProtKB/Swiss-Prot:P00452" /db_xref="EcoGene:EG10660" /db_xref="GeneID:946612" /translation="MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELR SHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPAL YDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNR VTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTP TRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHT GCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMD YGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQR VKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLN DVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAM GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACP WFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSET SSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLV GIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAED AQDDLVPSIQDDGCESGACKI" repeat_region 2347160..2347362 /note="REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences" gene 2347384..2348514 /gene="nrdB" /locus_tag="b2235" /gene_synonym="ECK2227; ftsB; JW2229" /db_xref="EcoGene:EG10661" /db_xref="GeneID:946732" CDS 2347384..2348514 /gene="nrdB" /locus_tag="b2235" /gene_synonym="ECK2227; ftsB; JW2229" /EC_number="1.17.4.1" /function="enzyme; 2'-Deoxyribonucleotide metabolism" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /note="ribonucleoside-diphosphate reductase 1, beta subunit, B2" /codon_start=1 /transl_table=11 /product="ribonucleoside-diphosphate reductase 1, beta subunit, ferritin-like protein" /protein_id="NP_416738.1" /db_xref="GI:16130170" /db_xref="ASAP:ABE-0007386" /db_xref="UniProtKB/Swiss-Prot:P69924" /db_xref="EcoGene:EG10661" /db_xref="GeneID:946732" /translation="MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQ LSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISI PELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDE LIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFA FAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDL FVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIP WINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL" gene 2348514..2348768 /gene="yfaE" /locus_tag="b2236" /gene_synonym="ECK2228; JW2230" /db_xref="EcoGene:EG12360" /db_xref="GeneID:946729" CDS 2348514..2348768 /gene="yfaE" /locus_tag="b2236" /gene_synonym="ECK2228; JW2230" /codon_start=1 /transl_table=11 /product="ferredoxin involved with ribonucleotide reductase diferric-tyrosyl radical (Y*) cofactor maintenance" /protein_id="NP_416739.1" /db_xref="GI:16130171" /db_xref="ASAP:ABE-0007390" /db_xref="UniProtKB/Swiss-Prot:P0ABW3" /db_xref="EcoGene:EG12360" /db_xref="GeneID:946729" /translation="MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGS CRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM" repeat_region 2348781..2348816 /note="REP165 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2348822..2349472) /gene="inaA" /locus_tag="b2237" /gene_synonym="ECK2229; JW2231; yfaG" /db_xref="EcoGene:EG11422" /db_xref="GeneID:946731" CDS complement(2348822..2349472) /gene="inaA" /locus_tag="b2237" /gene_synonym="ECK2229; JW2231; yfaG" /function="phenotype; Adaptations, atypical conditions" /note="pH-inducible protein involved in stress response" /codon_start=1 /transl_table=11 /product="acid-inducible Kdo/WaaP family putative kinase" /protein_id="NP_416740.1" /db_xref="GI:16130172" /db_xref="ASAP:ABE-0007393" /db_xref="UniProtKB/Swiss-Prot:P27294" /db_xref="EcoGene:EG11422" /db_xref="GeneID:946731" /translation="MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKL YVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALL VTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIY VKTEGNAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM" gene 2349651..2349893 /gene="yfaH" /locus_tag="b2238" /gene_synonym="ECK2230; JW2232" /pseudo /db_xref="EcoGene:EG12881" /db_xref="GeneID:946718" CDS 2349651..2349893 /gene="yfaH" /locus_tag="b2238" /gene_synonym="ECK2230; JW2232" /note="pseudogene" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0007397" /db_xref="UniProtKB/Swiss-Prot:P45505" /db_xref="EcoGene:EG12881" /db_xref="GeneID:946718" gene complement(2349935..2351011) /gene="glpQ" /locus_tag="b2239" /gene_synonym="ECK2231; JW2233" /db_xref="EcoGene:EG10399" /db_xref="GeneID:946725" CDS complement(2349935..2351011) /gene="glpQ" /locus_tag="b2239" /gene_synonym="ECK2231; JW2233" /EC_number="3.1.4.46" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006071 - glycerol metabolic process" /note="glycerophosphodiester phosphodiesterase, periplasmic" /codon_start=1 /transl_table=11 /product="periplasmic glycerophosphodiester phosphodiesterase" /protein_id="NP_416742.1" /db_xref="GI:16130174" /db_xref="ASAP:ABE-0007399" /db_xref="UniProtKB/Swiss-Prot:P09394" /db_xref="EcoGene:EG10399" /db_xref="GeneID:946725" /translation="MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLP EHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARKDGRY YAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNH STGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRI KNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADG IGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDAL YNKAGVNGLFTDFPDKAVKFLNKE" gene complement(2351016..2352374) /gene="glpT" /locus_tag="b2240" /gene_synonym="ECK2232; JW2234" /db_xref="EcoGene:EG10401" /db_xref="GeneID:946704" CDS complement(2351016..2352374) /gene="glpT" /locus_tag="b2240" /gene_synonym="ECK2232; JW2234" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration; GO:0006071 - glycerol metabolic process" /note="sn-glycerol-3-phosphate permease" /codon_start=1 /transl_table=11 /product="sn-glycerol-3-phosphate transporter" /protein_id="NP_416743.1" /db_xref="GI:16130175" /db_xref="ASAP:ABE-0007401" /db_xref="UniProtKB/Swiss-Prot:P08194" /db_xref="EcoGene:EG10401" /db_xref="GeneID:946704" /translation="MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLV RKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQERN GG" gene 2352647..2354275 /gene="glpA" /locus_tag="b2241" /gene_synonym="ECK2233; JW2235" /db_xref="EcoGene:EG10391" /db_xref="GeneID:946713" CDS 2352647..2354275 /gene="glpA" /locus_tag="b2241" /gene_synonym="ECK2233; JW2235" /EC_number="1.1.5.3" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /experiment="N-terminus verified by Edman degradation: PMID 3286606" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration; GO:0006071 - glycerol metabolic process" /note="sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit" /codon_start=1 /transl_table=11 /product="anaerobic sn-glycerol-3-phosphate dehydrogenase, large FAD/NAD(P)-binding subunit" /protein_id="NP_416744.1" /db_xref="GI:16130176" /db_xref="ASAP:ABE-0007422" /db_xref="UniProtKB/Swiss-Prot:P0A9C0" /db_xref="EcoGene:EG10391" /db_xref="GeneID:946713" /translation="MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIAT GATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLS FQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLD AKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAE YADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYN EIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIV LLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEP AEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVEN LNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKG VQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL" gene 2354265..2355524 /gene="glpB" /locus_tag="b2242" /gene_synonym="ECK2234; glpC; JW2236; psi-51" /db_xref="EcoGene:EG10392" /db_xref="GeneID:946733" CDS 2354265..2355524 /gene="glpB" /locus_tag="b2242" /gene_synonym="ECK2234; glpC; JW2236; psi-51" /EC_number="1.1.5.3" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /experiment="N-terminus verified by Edman degradation: PMID 3286606" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration; GO:0006071 - glycerol metabolic process" /codon_start=1 /transl_table=11 /product="anaerobic sn-glycerol-3-phosphate dehydrogenase membrane anchor subunit" /protein_id="NP_416745.1" /db_xref="GI:16130177" /db_xref="ASAP:ABE-0007424" /db_xref="UniProtKB/Swiss-Prot:P13033" /db_xref="EcoGene:EG10392" /db_xref="GeneID:946733" /translation="MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGS LDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYSLLEPQRVLDLACQAQALIAESGAQL QGSVELAHQRVTPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLR ELGLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMI LMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPG DEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLD VLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIA QGCGGGVCAVSALHAAQQIAQRAGGQQ" gene 2355521..2356711 /gene="glpC" /locus_tag="b2243" /gene_synonym="ECK2235; glpB; JW2237" /db_xref="EcoGene:EG10393" /db_xref="GeneID:946735" CDS 2355521..2356711 /gene="glpC" /locus_tag="b2243" /gene_synonym="ECK2235; glpB; JW2237" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /experiment="N-terminus verified by Edman degradation: PMID 3286606" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration; GO:0006071 - glycerol metabolic process" /note="sn-glycerol-3-phosphate dehydrogenase (anaerobic), K-small subunit" /codon_start=1 /transl_table=11 /product="anaerobic sn-glycerol-3-phosphate dehydrogenase, C subunit, 4Fe-4S iron-sulfur cluster" /protein_id="NP_416746.1" /db_xref="GI:16130178" /db_xref="ASAP:ABE-0007426" /db_xref="UniProtKB/Swiss-Prot:P0A996" /db_xref="EcoGene:EG10393" /db_xref="GeneID:946735" /translation="MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLK DGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMG SVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYK DQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQ AITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWR KLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRNIPGLELTVLDSQCCGIAG TYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLA QALA" gene 2356904..2357803 /gene="yfaD" /locus_tag="b2244" /gene_synonym="ECK2236; JW2238" /db_xref="EcoGene:EG12323" /db_xref="GeneID:946737" CDS 2356904..2357803 /gene="yfaD" /locus_tag="b2244" /gene_synonym="ECK2236; JW2238" /codon_start=1 /transl_table=11 /product="transposase_31 family protein" /protein_id="NP_416747.1" /db_xref="GI:16130179" /db_xref="ASAP:ABE-0007429" /db_xref="UniProtKB/Swiss-Prot:P37014" /db_xref="EcoGene:EG12323" /db_xref="GeneID:946737" /translation="MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQT LRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAA MQRHQDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFLLVDIT IVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQ CGDTSRFTRFIEEIAERSPLQKERLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLE QGFEREIVLATTQLTDADIPNCH" gene 2357804..2358001 /gene="ypaA" /locus_tag="b4543" /gene_synonym="ECK2237; JW5964" /pseudo /db_xref="EcoGene:EG14427" /db_xref="GeneID:1450280" CDS 2357804..2358001 /gene="ypaA" /locus_tag="b4543" /gene_synonym="ECK2237; JW5964" /note="pseudogene, C-terminal fragment, Transposase_31 family" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0285064" /db_xref="EcoGene:EG14427" /db_xref="GeneID:1450280" gene complement(2358042..2358845) /gene="rhmA" /locus_tag="b2245" /gene_synonym="ECK2238; JW2239; yfaU" /db_xref="EcoGene:EG14083" /db_xref="GeneID:948054" CDS complement(2358042..2358845) /gene="rhmA" /locus_tag="b2245" /gene_synonym="ECK2238; JW2239; yfaU" /function="enzyme; Sugar metabolism" /codon_start=1 /transl_table=11 /product="2-keto-3-deoxy-L-rhamnonate aldolase" /protein_id="NP_416748.1" /db_xref="GI:16130180" /db_xref="ASAP:ABE-0007431" /db_xref="UniProtKB/Swiss-Prot:P76469" /db_xref="EcoGene:EG14083" /db_xref="GeneID:948054" /translation="MNALLSNPFKERLRKGEVQIGLWLSSTTAYMAEIAATSGYDWLL IDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTA EQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDN LDEILDVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIETSIRRIRAAGKAAGFLAV APDMAQQCLAWGANFVAVGVDTMLYSDALDQRLAMFKSGKNGPRIKGSY" gene complement(2358863..2360152) /gene="rhmT" /locus_tag="b2246" /gene_synonym="ECK2239; JW2240; yfaV" /db_xref="EcoGene:EG14084" /db_xref="GeneID:945796" CDS complement(2358863..2360152) /gene="rhmT" /locus_tag="b2246" /gene_synonym="ECK2239; JW2240; yfaV" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative L-rhamnonate transporter" /protein_id="NP_416749.4" /db_xref="GI:90111406" /db_xref="ASAP:ABE-0007433" /db_xref="UniProtKB/Swiss-Prot:P76470" /db_xref="EcoGene:EG14084" /db_xref="GeneID:945796" /translation="MSTALLDAVVKKNRVRLIPFMLALYVLAFLDRSNIGFAKQTYQI DTGLSNEAYALGAGIFFVVYAFLGVPANLLMRKLGARTWIGTTTLLWGFLSAAMAWAD TEAKFLIVRTLLRAAEAGFFPGMIYLTSQWFPQRNRASIMGLFYMGAPLALTLGSPLS GALLEMHGFMGHPGWFWMFVIEGLLAVGAGVFTFFWLDDTPEQARFLSKQEKTLLINQ LASEEQQKVTSRLSDALRNGRVWQLAIIYLTIQVAVYGLIFFLPTQVAALLGTKVGFT ASVVTAIPWVAALFGTWLIPRYSDKTGERRNVAALTLLAAGIGIGLSGLLSPVMAIVA LCVAAIGFIAVQPVFWTMPTQLLSGTALAAGIGFVNLFGAVGGFIAPILRVKAETLFA SDAAGLLTLAAVAVIGSLIIFTLRVNRTVAQTDVAHH" gene complement(2360209..2361414) /gene="rhmD" /locus_tag="b2247" /gene_synonym="ECK2240; JW2241; yfaW" /db_xref="EcoGene:EG14085" /db_xref="GeneID:945881" CDS complement(2360209..2361414) /gene="rhmD" /locus_tag="b2247" /gene_synonym="ECK2240; JW2241; yfaW" /function="enzyme; Sugar metabolism" /note="putative racemase" /codon_start=1 /transl_table=11 /product="L-rhamnonate dehydratase" /protein_id="NP_416750.2" /db_xref="GI:226524733" /db_xref="ASAP:ABE-0007436" /db_xref="UniProtKB/Swiss-Prot:P77215" /db_xref="EcoGene:EG14085" /db_xref="GeneID:945881" /translation="MTLPKIKQVRAWFTGGATAEKGAGGGDYHDQGANHWIDDHIATP MSKYRDYEQSRQSFGINVLGTLVVEVEAENGQTGFAVSTAGEMGCFIVEKHLNRFIEG KCVSDIKLIHDQMLSATLYYSGSGGLVMNTISCVDLALWDLFGKVVGLPVYKLLGGAV RDEIQFYATGARPDLAKEMGFIGGKMPTHWGPHDGDAGIRKDAAMVADMREKCGEDFW LMLDCWMSQDVNYATKLAHACAPYNLKWIEECLPPQQYESYRELKRNAPVGMMVTSGE HHGTLQSFRTLSETGIDIMQPDVGWCGGLTTLVEIAAIAKSRGQLVVPHGSSVYSHHA VITFTNTPFSEFLMTSPDCSTMRPQFDPILLNEPVPVNGRIHKSVLDKPGFGVELNRD CNLKRPYSH" gene complement(2361429..2362211) /gene="rhmR" /locus_tag="b2248" /gene_synonym="ECK2241; JW2242; yfaX" /db_xref="EcoGene:EG14086" /db_xref="GeneID:944752" CDS complement(2361429..2362211) /gene="rhmR" /locus_tag="b2248" /gene_synonym="ECK2241; JW2242; yfaX" /function="putative regulator; Not classified" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent; GO:0006350 - transcription" /note="putative regulator" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator for the rhm operon" /protein_id="NP_416751.1" /db_xref="GI:16130183" /db_xref="ASAP:ABE-0007438" /db_xref="UniProtKB/Swiss-Prot:P77732" /db_xref="EcoGene:EG14086" /db_xref="GeneID:944752" /translation="MLESSKVPALTRAIDILNLIARIGPCSAATIIDTLGIPKSTAYL LLNELRRQRFLSLDHQENFCLWTRLVELSGHALSKMDLRELARPRLTQLMDTTGLLCH LGIIDNGSAYYILKVESSATISVRSHEGKSLSLYRSGIGKCLLAWQPAAVQQSIIEGL VWEQATPTTITHPQQLHEELARIRRQGWSYDNGEDYADVRCVAAPVFNANNELTAAIS VVGTRLQINEEYRDYLAGKAIACARDISRLLGWKSPFDLQAS" gene complement(2362431..2363633) /gene="yfaY" /locus_tag="b2249" /gene_synonym="cinA; ECK2242; JW2243" /db_xref="EcoGene:EG14087" /db_xref="GeneID:945478" CDS complement(2362431..2363633) /gene="yfaY" /locus_tag="b2249" /gene_synonym="cinA; ECK2242; JW2243" /codon_start=1 /transl_table=11 /product="inactive PncC family protein" /protein_id="NP_416752.1" /db_xref="GI:16130184" /db_xref="ASAP:ABE-0007441" /db_xref="UniProtKB/Swiss-Prot:P77808" /db_xref="EcoGene:EG14087" /db_xref="GeneID:945478" /translation="MLKVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVG DNLDDLVTILRERSQHADVLIVNGGLGPTSDDLSALAAATAKGEGLVLHEAWLKEMER YFHERGRVMAPSNRKQAELPASAEFINNPVGTACGFAVQLNRCLMFFTPGVPSEFKVM VEHEILPRLRERFSLPQPPVCLRLTTFGRSESDLAQSLDTLQLPPGVTMGYRSSMPII ELKLTGPASEQQAMEKLWLDVKRVAGQSVIFEGTEGLPAQISRELQNRQFSLTLSEQF TGGLLALQLSRAGAPLLACEVVPSQEETLAQTAHWITERRANHFAGLALAVSGFENEH LNFALATPDGTFALRVRFSTTRYSLAIRQEVCAMMALNMLRRWLNGQDIASEHGWIEV VESMTLSV" gene complement(2363733..2364275) /gene="yfaZ" /locus_tag="b2250" /gene_synonym="ECK2243; JW5371" /db_xref="EcoGene:EG14088" /db_xref="GeneID:946739" CDS complement(2363733..2364275) /gene="yfaZ" /locus_tag="b2250" /gene_synonym="ECK2243; JW5371" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="outer membrane protein, putative porin" /protein_id="NP_416753.4" /db_xref="GI:90111407" /db_xref="ASAP:ABE-0007445" /db_xref="UniProtKB/Swiss-Prot:P76471" /db_xref="EcoGene:EG14088" /db_xref="GeneID:946739" /translation="MKKIALAGLAGMLLVSASVNAMSISGQAGKEYTNIGVGFGTETT GLALSGNWTHNDDDGDVAGVGLGLNLPLGPLMATVGGKGVYTNPNYGDEGYAAAVGGG LQWKIGNSFRLFGEYYYSPDSLSSGIQSYEEANAGARYTIMRPVSIEAGYRYLNLSGK DGNRDNAVADGPYVGVNASF" gene 2364554..2364979 /gene="nudI" /locus_tag="b2251" /gene_synonym="ECK2244; JW2245; yfaO" /db_xref="EcoGene:EG13275" /db_xref="GeneID:946740" CDS 2364554..2364979 /gene="nudI" /locus_tag="b2251" /gene_synonym="ECK2244; JW2245; yfaO" /codon_start=1 /transl_table=11 /product="nucleoside triphosphatase" /protein_id="NP_416754.1" /db_xref="GI:16130186" /db_xref="ASAP:ABE-0007449" /db_xref="UniProtKB/Swiss-Prot:P52006" /db_xref="EcoGene:EG13275" /db_xref="GeneID:946740" /translation="MRQRTIVCPLIQNDGAYLLCKMADDRGVFPGQWAISGGGVEPGE RIEEALRREIREELGEQLLLTEITPWTFSDDIRTKTYADGRKEEIYMIYLIFDCVSAN REVKINEEFQDYAWVKPEDLVHYDLNVATRKTLRLKGLL" gene complement(2365018..2365620) /gene="ais" /locus_tag="b2252" /gene_synonym="ECK2245; JW2246; pagH; pmrG" /db_xref="EcoGene:EG13155" /db_xref="GeneID:944945" CDS complement(2365018..2365620) /gene="ais" /locus_tag="b2252" /gene_synonym="ECK2245; JW2246; pagH; pmrG" /function="phenotype; Not classified" /note="protein induced by aluminum" /codon_start=1 /transl_table=11 /product="putative LPS core heptose(II)-phosphate phosphatase" /protein_id="NP_416755.1" /db_xref="GI:16130187" /db_xref="ASAP:ABE-0007451" /db_xref="UniProtKB/Swiss-Prot:P45565" /db_xref="EcoGene:EG13155" /db_xref="GeneID:944945" /translation="MLAFCRSSLKSKKYIIILLALAAIAGLGTHAAWSSNGLPRIDNK TLARLAQQHPVVVLFRHAERCDRSTNQCLSDKTGITVKGTQDARELGNAFSADIPDFD LYSSNTVRTIQSATWFSAGKKLTVDKRLLQCGNEIYSAIKDLQSKAPDKNIVIFTHNH CLTYIAKDKRDATFKPDYLDGLVMHVEKGKVYLDGEFVNH" gene 2365928..2367067 /gene="arnB" /locus_tag="b2253" /gene_synonym="ECK2246; JW5372; pgbP1; pmrH; yfbE" /db_xref="EcoGene:EG14089" /db_xref="GeneID:947375" CDS 2365928..2367067 /gene="arnB" /locus_tag="b2253" /gene_synonym="ECK2246; JW5372; pgbP1; pmrH; yfbE" /function="putative enzyme; Not classified" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="uridine 5'-(beta-1-threo-pentapyranosyl-4-ulose diphosphate) aminotransferase, PLP-dependent" /protein_id="NP_416756.5" /db_xref="GI:145698288" /db_xref="ASAP:ABE-0007456" /db_xref="UniProtKB/Swiss-Prot:P77690" /db_xref="EcoGene:EG14089" /db_xref="GeneID:947375" /translation="MSEFLPFSRPAMGVEELAAVKEVLESGWITTGPKNQALEQAFCQ LTGNQHAIAVSSATAGMHITLMALKIGKGDEVITPSLTWVSTLNMISLLGATPVMVDV DRDTLMVTPEAIESAITPRTKAIIPVHYAGAPADIDAIRAIGERYGIAVIEDAAHAVG TYYKGRHIGAKGTAIFSFHAIKNITCAEGGLIVTDNENLARQLRMLKFHGLGVDAYDR QTWGRAPQAEVLTPGYKYNLTDINAAIALTQLVKLEHLNTRRREIAQQYQQALAALPF QPLSLPAWPHVHAWHLFIIRVDEQRCGISRDALMEALKERGIGTGLHFRAAHTQKYYR ERFPTLSLPNTEWNSERICSLPLFPDMTTADADHVITALQQLAGQ" gene 2367071..2368039 /gene="arnC" /locus_tag="b2254" /gene_synonym="ECK2247; JW2248; ORF2; pmrF; yfbF" /db_xref="EcoGene:EG14090" /db_xref="GeneID:945275" CDS 2367071..2368039 /gene="arnC" /locus_tag="b2254" /gene_synonym="ECK2247; JW2248; ORF2; pmrF; yfbF" /function="putative enzyme; Not classified" /note="putative sugar transferase" /codon_start=1 /transl_table=11 /product="undecaprenyl phosphate-L-Ara4FN transferase" /protein_id="NP_416757.1" /db_xref="GI:16130189" /db_xref="ASAP:ABE-0007458" /db_xref="UniProtKB/Swiss-Prot:P77757" /db_xref="EcoGene:EG14090" /db_xref="GeneID:945275" /translation="MFEIHPVKKVSVVIPVYNEQESLPELIRRTTTACESLGKEYEIL LIDDGSSDNSAHMLVEASQAENSHIVSILLNRNYGQHSAIMAGFSHVTGDLIITLDAD LQNPPEEIPRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYG CMLRAYRRHIVDAMLHCHERSTFIPILANIFARRAIEIPVHHAEREFGESKYSFMRLI NLMYDLVTCLTTTPLRMLSLLGSIIAIGGFSIAVLLVILRLTFGPQWAAEGVFMLFAV LFTFIGAQFIGMGLLGEYIGRIYTDVRARPRYFVQQVIRPSSKENE" gene 2368039..2370021 /gene="arnA" /locus_tag="b2255" /gene_synonym="ECK2248; JW2249; pbgP3; pmrI; SAF; yfbG" /db_xref="EcoGene:EG14091" /db_xref="GeneID:947683" CDS 2368039..2370021 /gene="arnA" /locus_tag="b2255" /gene_synonym="ECK2248; JW2249; pbgP3; pmrI; SAF; yfbG" /EC_number="2.1.2.-" /EC_number="4.1.1.35" /function="putative enzyme; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 11248028" /note="putative transformylase" /codon_start=1 /transl_table=11 /product="fused UDP-L-Ara4N formyltransferase/UDP-GlcA C-4'-decarboxylase" /protein_id="NP_416758.1" /db_xref="GI:16130190" /db_xref="ASAP:ABE-0007460" /db_xref="UniProtKB/Swiss-Prot:P77398" /db_xref="EcoGene:EG14091" /db_xref="GeneID:947683" /translation="MKTVVFAYHDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGS VARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVIFSFYYRHLIYDEILQLAPAGAFN LHGSLLPKYRGRAPLNWVLVNGETETGVTLHRMVKRADAGAIVAQLRIAIAPDDIAIT LHHKLCHAARQLLEQTLPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLH NMVRAVADPWPGAFSYVGNQKFTVWSSRVHPHASKAQPGSVISVAPLLIACGDGALEI VTGQAGDGITMQGSQLAQTLGLVQGSRLNSQPACTARRRTRVLILGVNGFIGNHLTER LLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI ATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSN LIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGS SRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIG NPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIR NAHRCLDWEPKIDMQETIDETLDFFLRTVDLTDKPS" gene 2370018..2370908 /gene="arnD" /locus_tag="b2256" /gene_synonym="ECK2249; JW2250; pbgP4; pmrJ; yfbH" /db_xref="EcoGene:EG14092" /db_xref="GeneID:945334" CDS 2370018..2370908 /gene="arnD" /locus_tag="b2256" /gene_synonym="ECK2249; JW2250; pbgP4; pmrJ; yfbH" /codon_start=1 /transl_table=11 /product="undecaprenyl phosphate-alpha-L-ara4FN deformylase" /protein_id="NP_416759.1" /db_xref="GI:16130191" /db_xref="ASAP:ABE-0007462" /db_xref="UniProtKB/Swiss-Prot:P76472" /db_xref="EcoGene:EG14092" /db_xref="GeneID:945334" /translation="MTKVGLRIDVDTFRGTREGVPRLLEILSKHNIQASIFFSVGPDN MGRHLWRLVKPQFLWKMLRSNAASLYGWDILLAGTAWPGKEIGHANADIIREAAKHHE VGLHAWDHHAWQARSGNWDRQTMIDDIARGLRTLEEIIGQPVTCSAAAGWRADQKVIE AKEAFHLRYNSDCRGAMPFRPLLESGNPGTAQIPVTLPTWDEVIGRDVKAEDFNGWLL NRILRDKGTPVYTIHAEVEGCAYQHNFVDLLKRAAQEGVTFCPLSELLSETLPLGQVV RGNIAGREGWLGCQQIAGSR" gene 2370908..2372560 /gene="arnT" /locus_tag="b2257" /gene_synonym="ECK2250; JW2251; pbgE1; pmrK; pqaB; yfbI" /db_xref="EcoGene:EG14093" /db_xref="GeneID:947297" CDS 2370908..2372560 /gene="arnT" /locus_tag="b2257" /gene_synonym="ECK2250; JW2251; pbgE1; pmrK; pqaB; yfbI" /GO_process="GO:0006950 - response to stress" /note="4-amino-4-deoxy-L-arabinose transferase (lipid A modification)" /codon_start=1 /transl_table=11 /product="4-amino-4-deoxy-L-arabinose transferase" /protein_id="NP_416760.1" /db_xref="GI:16130192" /db_xref="ASAP:ABE-0007464" /db_xref="UniProtKB/Swiss-Prot:P76473" /db_xref="EcoGene:EG14093" /db_xref="GeneID:947297" /translation="MKSVRYLIGLFAFIACYYLLPISTRLLWQPDETRYAEISREMLA SGDWIVPHLLGLRYFEKPIAGYWINSIGQWLFGANNFGVRAGVIFATLLTAALVTWFT LRLWRDKRLALLATVIYLSLFIVYAIGTYAVLDPFIAFWLVAGMCSFWLAMQAQTWKG KSAGFLLLGITCGMGVMTKGFLALAVPVLSVLPWVATQKRWKDLFIYGWLAVISCVLT VLPWGLAIAQREPNFWHYFFWVEHIQRFALDDAQHRAPFWYYVPVIIAGSLPWLGLLP GALYTGWKNRKHSATVYLLSWTIMPLLFFSVAKGKLPTYILSCFASLAMLMAHYALLA AKNNPLALRINGWINIAFGVTGIIATFVVSPWGPMNTPVWQTFESYKVFCAWSIFSLW AFFGWYTLTNVEKTWPFAALCPLGLALLVGFSIPDRVMEGKHPQFFVEMTQESLQPSR YILTDSVGVAAGLAWSLQRDDIIMYRQTGELKYGLNYPDAKGRFVSGDEFANWLNQHR QEGIITLVLSVDRDEDINSLAIPPADAIDRQERLVLIQYRPK" gene 2372557..2372892 /gene="arnE" /locus_tag="b4544" /gene_synonym="ECK2251; JW2252; pbgE2; pmrL; yfbW" /db_xref="EcoGene:EG14344" /db_xref="GeneID:1450282" CDS 2372557..2372892 /gene="arnE" /locus_tag="b4544" /gene_synonym="ECK2251; JW2252; pbgE2; pmrL; yfbW" /function="transport; Transport of small molecules: lipids" /GO_component="GO:0016021 - integral to membrane" /codon_start=1 /transl_table=11 /product="undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit" /protein_id="YP_588462.1" /db_xref="GI:94541119" /db_xref="ASAP:ABE-0285065" /db_xref="UniProtKB/Swiss-Prot:Q47377" /db_xref="EcoGene:EG14344" /db_xref="GeneID:1450282" /translation="MIWLTLVFASLLSVAGQLCQKQATCFVAINKRRKHIVLWLGLAL ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIG GIVILGSTV" gene 2372892..2373278 /gene="arnF" /locus_tag="b2258" /gene_synonym="ECK2252; JW5373; pbgE3; pmrM; yfbJ" /db_xref="EcoGene:EG14094" /db_xref="GeneID:945344" CDS 2372892..2373278 /gene="arnF" /locus_tag="b2258" /gene_synonym="ECK2252; JW5373; pbgE3; pmrM; yfbJ" /function="transport; Transport of small molecules: lipids" /note="putative transport/receptor protein" /codon_start=1 /transl_table=11 /product="undecaprenyl phosphate-alpha-L-ara4N exporter; flippase ArnEF subunit" /protein_id="NP_416761.4" /db_xref="GI:90111409" /db_xref="ASAP:ABE-0007466" /db_xref="UniProtKB/Swiss-Prot:P76474" /db_xref="EcoGene:EG14094" /db_xref="GeneID:945344" /translation="MGLMWGLFSVIIASVAQLSLGFAASHLPPMTHLWDFIAALLAFG LDARILLLGLLGYLLSVFCWYKTLHKLALSKAYALLSMSYVLVWIASMVLPGWEGTFS LKALLGVACIMSGLMLIFLPTTKQRY" gene complement(2373272..2373538) /gene="pmrD" /locus_tag="b2259" /gene_synonym="ECK2253; JW2254" /db_xref="EcoGene:EG12671" /db_xref="GeneID:945130" CDS complement(2373272..2373538) /gene="pmrD" /locus_tag="b2259" /gene_synonym="ECK2253; JW2254" /function="putative transport; Drug/analog sensitivity" /GO_process="GO:0042493 - response to drug" /note="an active Salmonella PmrD ortholog blocks dephosphorylation of PmrA(BasR) by PmrB(BasS)" /codon_start=1 /transl_table=11 /product="inactive two-component system connector protein" /protein_id="NP_416762.2" /db_xref="GI:90111410" /db_xref="ASAP:ABE-0007468" /db_xref="UniProtKB/Swiss-Prot:P37590" /db_xref="EcoGene:EG12671" /db_xref="GeneID:945130" /translation="MEWLVKKSCCNKQDNRHVLMLCDAGGAIKMIAEVKSDFAVKVGD LLSPLQNALYCINREKLHTVKVLSASSYSPDEWERQCKVAGKTQ" gene complement(2373648..2375003) /gene="menE" /locus_tag="b2260" /gene_synonym="ECK2254; JW2255" /db_xref="EcoGene:EG12437" /db_xref="GeneID:946741" CDS complement(2373648..2375003) /gene="menE" /locus_tag="b2260" /gene_synonym="ECK2254; JW2255" /EC_number="6.2.1.26" /function="enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone" /GO_process="GO:0009061 - anaerobic respiration" /codon_start=1 /transl_table=11 /product="O-succinylbenzoate-CoA ligase" /protein_id="NP_416763.1" /db_xref="GI:16130195" /db_xref="ASAP:ABE-0007471" /db_xref="UniProtKB/Swiss-Prot:P37353" /db_xref="EcoGene:EG12437" /db_xref="GeneID:946741" /translation="MIFSDWPWRHWRQVRGETIALRLNDEQLNWRELCARVDELASGF AVQGVVEGSGVMLRAWNTPQTLLAWLALLQCGARVLPVNPQLPQPLLEELLPNLTLQF ALVPDGENTFPALTSLHIQLVEGAHAATWQPTRLCSMTLTSGSTGLPKAAVHTYQAHL ASAQGVLSLIPFGDHDDWLLSLPLFHVSGQGIMWRWLYAGARMTVRDKQPLEQMLAGC THASLVPTQLWRLLVNRSSVSLKAVLLGGAAIPVELTEQAREQGIRCFCGYGLTEFAS TVCAKEADGLADVGSPLPGREVKIVNNEVWLRAASMAEGYWRNGQLVSLVNDEGWYAT RDRGEMHNGKLTIVGRLDNLFFSGGEGIQPEEVERVIAAHPAVLQVFIVPVADKEFGH RPVAVMEYDHESVDLSEWVKDKLARFQQPVRWLTLPPELKNGGIKISRQALKEWVQRQ Q" gene complement(2375000..2375962) /gene="menC" /locus_tag="b2261" /gene_synonym="ECK2255; JW2256" /db_xref="EcoGene:EG11532" /db_xref="GeneID:946734" CDS complement(2375000..2375962) /gene="menC" /locus_tag="b2261" /gene_synonym="ECK2255; JW2256" /EC_number="4.2.1.-" /function="enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone" /GO_process="GO:0009061 - anaerobic respiration" /note="o-succinylbenzoyl-CoA synthase; conversion of chorismate to 2-o-succinylbenzoyl-CoA" /codon_start=1 /transl_table=11 /product="O-succinylbenzoyl-CoA synthase" /protein_id="NP_416764.1" /db_xref="GI:16130196" /db_xref="ASAP:ABE-0007473" /db_xref="UniProtKB/Swiss-Prot:P29208" /db_xref="EcoGene:EG11532" /db_xref="GeneID:946734" /translation="MRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLREGEREGWGE ISPLPGFSQETWEEAQSVLLAWVNNWLAGDCELPQMPSVAFGVSCALAELTDTLPQAA NYRAAPLCNGDPDDLILKLADMPGEKVAKVKVGLYEAVRDGMVVNLLLEAIPDLHLRL DANRAWTPLKGQQFAKYVNPDYRDRIAFLEEPCKTRDDSRAFARETGIAIAWDESLRE PDFAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLAR IAAWLTPDTIPGLDTLDLMQAQQVRRWPGSTLPVVEVDALERLL" gene complement(2375962..2376819) /gene="menB" /locus_tag="b2262" /gene_synonym="ECK2256; JW2257" /db_xref="EcoGene:EG11368" /db_xref="GeneID:946747" CDS complement(2375962..2376819) /gene="menB" /locus_tag="b2262" /gene_synonym="ECK2256; JW2257" /EC_number="4.1.3.36" /function="enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone" /GO_process="GO:0009061 - anaerobic respiration" /note="dihydroxynaphtoic acid synthetase" /codon_start=1 /transl_table=11 /product="dihydroxynaphthoic acid synthetase" /protein_id="NP_416765.1" /db_xref="GI:16130197" /db_xref="ASAP:ABE-0007476" /db_xref="UniProtKB/Swiss-Prot:P0ABU0" /db_xref="EcoGene:EG11368" /db_xref="GeneID:946747" /translation="MIYPDEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQV RNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSG VHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVG SFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWC REMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQP DFSKFKRNP" gene complement(2376834..2377592) /gene="menH" /locus_tag="b2263" /gene_synonym="ECK2257; JW2258; yfbB" /db_xref="EcoGene:EG12438" /db_xref="GeneID:946736" CDS complement(2376834..2377592) /gene="menH" /locus_tag="b2263" /gene_synonym="ECK2257; JW2258; yfbB" /function="enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase" /protein_id="NP_416766.1" /db_xref="GI:16130198" /db_xref="ASAP:ABE-0007478" /db_xref="UniProtKB/Swiss-Prot:P37355" /db_xref="EcoGene:EG12438" /db_xref="GeneID:946736" /translation="MILHAQAKHGKPGLPWLVFLHGFSGDCHEWQEVGEAFADYSRLY VDLPGHGGSAAISVDGFDDVTDLLRKTLVSYNILDFWLVGYSLGGRVAMMAACQGLAG LCGVIVEGGHPGLQNAEQRAERQRSDRQWVQRFLTEPLTAVFADWYQQPVFASLNDDQ RRELVALRSNNNGATLAAMLEATSLAVQPDLRANLSARTFAFYYLCGERDSKFRALAA ELAADCHVIPRAGHNAHRENPAGVIASLAQILRF" gene complement(2377589..2379259) /gene="menD" /locus_tag="b2264" /gene_synonym="ECK2258; JW5374" /db_xref="EcoGene:EG10579" /db_xref="GeneID:946720" CDS complement(2377589..2379259) /gene="menD" /locus_tag="b2264" /gene_synonym="ECK2258; JW5374" /EC_number="2.2.1.9" /EC_number="4.1.1.71" /function="enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone" /GO_process="GO:0009061 - anaerobic respiration" /note="2-oxoglutarate decarboxylase; SHCHC synthase" /codon_start=1 /transl_table=11 /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase; SEPHCHC synthase" /protein_id="NP_416767.1" /db_xref="GI:16130199" /db_xref="ASAP:ABE-0007482" /db_xref="UniProtKB/Swiss-Prot:P17109" /db_xref="EcoGene:EG10579" /db_xref="GeneID:946720" /translation="MSVSAFNRRWAAVILEALTRHGVRHICIAPGSRSTPLTLAAAEN SAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLIL LTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLH AGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWR QKRGVVVAGRMSAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSEL QQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWL ELHPAEKRQPWCVEIPRLAEQAMQAVIARRDAFGEAQLAHRICDYLPEQGQLFVGNSL VVRLIDALSQLPAGYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLN ALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKY HRPQNWQELETAFADAWRTPTTTVIEMVVNDTDGAQTLQQLLAQVSHL" gene complement(2379348..2380643) /gene="menF" /locus_tag="b2265" /gene_synonym="ECK2259; JW2260; yfbA" /db_xref="EcoGene:EG12362" /db_xref="GeneID:946712" CDS complement(2379348..2380643) /gene="menF" /locus_tag="b2265" /gene_synonym="ECK2259; JW2260; yfbA" /EC_number="5.4.4.2" /function="enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone" /GO_process="GO:0009061 - anaerobic respiration" /note="isochorismate hydroxymutase 2, menaquinone biosynthesis" /codon_start=1 /transl_table=11 /product="isochorismate synthase 2" /protein_id="NP_416768.4" /db_xref="GI:90111411" /db_xref="ASAP:ABE-0007485" /db_xref="UniProtKB/Swiss-Prot:P38051" /db_xref="EcoGene:EG12362" /db_xref="GeneID:946712" /translation="MQSLTTALENLLRHLSQEIPATPGIRVIDIPFPLKDAFDALSWL ASQQTYPQFYWQQRNGDEEAVVLGAITRFTSLDQAQRFLRQHPEHADLRIWGLNAFDP SQGNLLLPRLEWRRCGGKATLRLTLFSESSLQHDAIQAKEFIATLVSIKPLPGLHLTT TREQHWPDKTGWTQLIELATKTIAEGELDKVVLARATDLHFASPVNAAAMMAASRRLN LNCYHFYMAFDGENAFLGSSPERLWRRRDKALRTEALAGTVANNPDDKQAQQLGEWLM ADDKNQRENMLVVEDICQRLQADTQTLDVLPPQVLRLRKVQHLRRCIWTSLNKADDVI CLHQLQPTAAVAGLPRDLARQFIARHEPFTREWYAGSAGYLSLQQSEFCVSLRSAKIS GNVVRLYAGAGIVRGSDPEQEWQEIDNKAAGLRTLLQME" gene complement(2380722..2381027) /gene="elaB" /locus_tag="b2266" /gene_synonym="ECK2260; JW2261; yfbD" /db_xref="EcoGene:EG13185" /db_xref="GeneID:946751" CDS complement(2380722..2381027) /gene="elaB" /locus_tag="b2266" /gene_synonym="ECK2260; JW2261; yfbD" /codon_start=1 /transl_table=11 /product="putative membrane-anchored DUF883 family ribosome-binding protein" /protein_id="NP_416769.1" /db_xref="GI:16130201" /db_xref="ASAP:ABE-0007487" /db_xref="UniProtKB/Swiss-Prot:P0AEH5" /db_xref="EcoGene:EG13185" /db_xref="GeneID:946751" /translation="MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAE KALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGIGVGAAVGLVLGLLLARR" gene complement(2381082..2381543) /gene="elaA" /locus_tag="b2267" /gene_synonym="ECK2261; JW2262; yfbC" /db_xref="EcoGene:EG13184" /db_xref="GeneID:946750" CDS complement(2381082..2381543) /gene="elaA" /locus_tag="b2267" /gene_synonym="ECK2261; JW2262; yfbC" /codon_start=1 /transl_table=11 /product="GNAT family putative N-acetyltransferase" /protein_id="NP_416770.1" /db_xref="GI:16130202" /db_xref="ASAP:ABE-0007489" /db_xref="UniProtKB/Swiss-Prot:P0AEH3" /db_xref="EcoGene:EG13184" /db_xref="GeneID:946750" /translation="MIEWQDLHHSELSVSQLYALLQLRCAVFVVEQNCPYQDIDGDDL TGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLET CTHHWPDKPVYLGAQAHLQNFYQSFGFIPVTEVYEEDGIPHIGMAREVIQA" gene 2381608..2382525 /gene="rbn" /locus_tag="b2268" /gene_synonym="ECK2262; ecoZ; elaC; JW2263; rnz; zipD" /db_xref="EcoGene:EG14260" /db_xref="GeneID:946760" CDS 2381608..2382525 /gene="rbn" /locus_tag="b2268" /gene_synonym="ECK2262; ecoZ; elaC; JW2263; rnz; zipD" /codon_start=1 /transl_table=11 /product="RNase BN, tRNA processing enzyme" /protein_id="NP_416771.4" /db_xref="GI:90111412" /db_xref="ASAP:ABE-0007496" /db_xref="UniProtKB/Swiss-Prot:P0A8V0" /db_xref="EcoGene:EG14260" /db_xref="GeneID:946760" /translation="MELIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQ HQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVE TALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALN AQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGPCDA ALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYD DKGCQHLLRECRSIFPATELANDFTVFNV" gene 2382713..2383924 /gene="elaD" /locus_tag="b2269" /gene_synonym="ECK2263; JW5840" /db_xref="EcoGene:EG14261" /db_xref="GeneID:946742" CDS 2382713..2383924 /gene="elaD" /locus_tag="b2269" /gene_synonym="ECK2263; JW5840" /function="putative enzyme; Not classified" /note="putative sulfatase / phosphatase" /codon_start=1 /transl_table=11 /product="protease, capable of cleaving an AMC-ubiquitin model substrate" /protein_id="NP_416772.1" /db_xref="GI:16130204" /db_xref="ASAP:ABE-0007499" /db_xref="UniProtKB/Swiss-Prot:Q47013" /db_xref="EcoGene:EG14261" /db_xref="GeneID:946742" /translation="MMVTVVSNYCQLSQTQLSQTFAEKFTVTEELLQSLKKTALSGDE ESIELLHNIALGYDKFGKEAEDILYHIVRTPTNETLSIIRLIKNACLKLYNLAHIATN SPLKSHDSDDLLFKKLFSPSKLMTIIGDEIPLISEKQSLSKVLLNDENNELSDGTNFW DKNRQLTTDEIACYLQKIAANAKNTQVNYPTGLYVPYSTRTHLEDALNENIKSDPSWP NEVQLFPINTGGHWILVSLQKIVNKKNNKLQIKCVIFNSLRALGYDKENSLKRVINSF NSELMGEMSNNNIKVHLNEPEIIFLHADLQQYLSQSCGAFVCMAAQEVIEQRESNSDS APYTLLKNHADRFKKYSAEEQYEIDFQHRLANRNCYLDKYGDANINHYYRNLEIKHSQ PKNRASGKRVS" gene complement(2383995..2385722) /gene="yfbK" /locus_tag="b2270" /gene_synonym="ECK2264; JW2265" /db_xref="EcoGene:EG14095" /db_xref="GeneID:946743" CDS complement(2383995..2385722) /gene="yfbK" /locus_tag="b2270" /gene_synonym="ECK2264; JW2265" /codon_start=1 /transl_table=11 /product="Von Willebrand factor domain putative lipoprotein" /protein_id="NP_416773.1" /db_xref="GI:16130205" /db_xref="ASAP:ABE-0007501" /db_xref="UniProtKB/Swiss-Prot:P76481" /db_xref="EcoGene:EG14095" /db_xref="GeneID:946743" /translation="MRNKNIIMLLMSSLILSGCGPQPENKESQQQQPSTPTEQQVLAA QQAAIKEAEQSAAAAKALAQQEVQQYSDKQALQGRLQEAPTFARAAKAKATHIANPGT ARYQQFDDNPVKQVAQNPLATFSLDVDTGSYANVRRFLNQGLLPPPDAVRVEEIVNYF PSDWDIKDKQSIPASKPIPFAMRYELAPAPWNEQRTLLKVDILAKDRKSEELPASNLV FLIDTSGSMISDERLPLIQSSLKLLVKELREQDNIAIVTYAGDSRIALPSISGSHKAE INAAIDSLDAEGSTNGGAGLELAYQQATKGFIKGGINRILLATDGDFNVGIDDPKSIE SMVKKQRESGVTLSTFGVGNSNYNEAMMVRIADVGNGNYSYIDTLSEAQKVLNSEMRQ MLITVAKDVKAQIEFNPAWVTEYRQIGYEKRQLRVEHFNNDNVDAGDIGAGKHITLLF ELTLNGQKASIDKLRYAPDNKLAKSDKTKELAWLKIRWKYPQGKESQLVEFPLGPTIN APSEDMRFRAAVAAYGQKLRGSEYLNNTSWQQIKQWAQQAKGEDPQGYRAEFIRLIEL ADGVTDISQ" gene 2385860..2386831 /gene="yfbL" /locus_tag="b2271" /gene_synonym="ECK2265; JW2266" /db_xref="EcoGene:EG14096" /db_xref="GeneID:945832" CDS 2385860..2386831 /gene="yfbL" /locus_tag="b2271" /gene_synonym="ECK2265; JW2266" /function="putative enzyme; Not classified" /note="putative aminopeptidase" /codon_start=1 /transl_table=11 /product="putative M28A family peptidase" /protein_id="NP_416774.2" /db_xref="GI:90111413" /db_xref="ASAP:ABE-0007506" /db_xref="UniProtKB/Swiss-Prot:P76482" /db_xref="EcoGene:EG14096" /db_xref="GeneID:945832" /translation="MKKIIFAFIILFVFLLPMIIFYQPWVNALPSTPRHASPEQLEKT VRYLTQTVHPRSADNIDNLNRSAEYIKEVFVSSGARVTSQDVPITGGPYKNIVADYGP ADGPLIIIGAHYDSASSYENDQLTYTPGADDNASGVAGLLELARLLHQQVPKTGVQLV AYASEEPPFFRSDEMGSAVHAASLERPVKLMIALEMIGYYDSAPGSQNYPYPAMSWLY PDRGDFIAVVGRIQDINAVRQVKAALLSSQDLSVYSMNTPGFIPGIDFSDHLNYWQHD IPAIMITDTAFYRNKQYHLPGDTADRLNYQKMAQVVDGVITLLYNSK" gene 2386934..2387437 /gene="yfbM" /locus_tag="b2272" /gene_synonym="ECK2266; JW2267" /db_xref="EcoGene:EG14097" /db_xref="GeneID:946745" CDS 2386934..2387437 /gene="yfbM" /locus_tag="b2272" /gene_synonym="ECK2266; JW2267" /codon_start=1 /transl_table=11 /product="DUF1877 family protein" /protein_id="NP_416775.1" /db_xref="GI:16130207" /db_xref="ASAP:ABE-0007509" /db_xref="UniProtKB/Swiss-Prot:P76483" /db_xref="EcoGene:EG14097" /db_xref="GeneID:946745" /translation="MGMIGYFAEIDSEKINQLLESTEKPLMDNIHDTLSGLRRLDIDK RWDFLHFGLTGTSAFDPAKNDPLSRAVLGEHSLEDGIDGFLGLTWNQELAATIDRLES LDRNELRKQFSIKRLNEMEIYPGVTFSEELEGQLFASIMLDMEKLISAYRRMLRQGNH ALTVIVG" gene complement(2387710..2388426) /gene="yfbN" /locus_tag="b2273" /gene_synonym="ECK2267; JW2268" /db_xref="EcoGene:EG14098" /db_xref="GeneID:946748" CDS complement(2387710..2388426) /gene="yfbN" /locus_tag="b2273" /gene_synonym="ECK2267; JW2268" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416776.1" /db_xref="GI:16130208" /db_xref="ASAP:ABE-0007511" /db_xref="UniProtKB/Swiss-Prot:P76484" /db_xref="EcoGene:EG14098" /db_xref="GeneID:946748" /translation="MEWLSEIRKLRKNVPVGIQVARRLLERTGGDVDEAIKLFHIDQI NILTAKADVTHQEAENVLLATNYDIAEALRRIDEQRYTLTELILRKNKDAGDALNNIA LAIEYEWDLKRKFWFGFADIQLLPPVLQTFMLVYEWHEYVGWEGMECGIFFESDHTHQ QLQALGLLELAQKMVTARIRYDELKDKAENFHEITEDDIFKMLIIHCDQLAREVDSIL LQFVKDNIDVFPCRHNRHEL" gene 2388635..2389057 /gene="yfbO" /locus_tag="b2274" /gene_synonym="ECK2268; JW2269" /db_xref="EcoGene:EG14099" /db_xref="GeneID:946752" CDS 2388635..2389057 /gene="yfbO" /locus_tag="b2274" /gene_synonym="ECK2268; JW2269" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416777.2" /db_xref="GI:226524734" /db_xref="ASAP:ABE-0007518" /db_xref="UniProtKB/Swiss-Prot:P76485" /db_xref="EcoGene:EG14099" /db_xref="GeneID:946752" /translation="MTPLERITQLVNINGDVNNPDTPRPLLSLEDFFIDNNIHGSICC NVIPEQSPQAIYHHFLKIRERNNVSDVLVEITMFDDPDWPFSESILVITTASPEEVQS WFVEEIAPDECWEGWSEDTEHGWVEVPVGMHPVTCWWD" gene 2389116..2389964 /gene="yfbP" /locus_tag="b2275" /gene_synonym="ECK2269; JW2270" /db_xref="EcoGene:EG14100" /db_xref="GeneID:946754" CDS 2389116..2389964 /gene="yfbP" /locus_tag="b2275" /gene_synonym="ECK2269; JW2270" /codon_start=1 /transl_table=11 /product="TPR-like repeats-containing protein" /protein_id="NP_416778.2" /db_xref="GI:345452721" /db_xref="ASAP:ABE-0007524" /db_xref="UniProtKB/Swiss-Prot:P76486" /db_xref="EcoGene:EG14100" /db_xref="GeneID:946754" /translation="MKLIPRSSDISPGIDGICPGPFPPNGFTVLTDAAYGNGDCFGLY WPIGQEHKLPIVCETYHDEWRIVPAFSSIKKFEEWLEVNDDDPHENGISIEDQDFAAN LFRVARKCLSTGRLDDALPLLQRATEQLPEVSEYWLALAIQYRRCKKTEAAAQAALNA YLGNWAFGVPDNKVIHLLSQAADVPNFQDDPVIQCIKEQGLDLSFGGTKENNNYPLMQ MCVDTYFAQRKPLQALTLLHNYAWIMSSETTAFQERYDFNIDEWRAKFRQLCLEYFGD SRTQFT" gene complement(2390048..2391505) /gene="nuoN" /locus_tag="b2276" /gene_synonym="ECK2270; JW2271" /db_xref="EcoGene:EG12093" /db_xref="GeneID:945136" CDS complement(2390048..2391505) /gene="nuoN" /locus_tag="b2276" /gene_synonym="ECK2270; JW2271" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration" /note="NADH dehydrogenase I chain N" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase, membrane subunit N" /protein_id="NP_416779.2" /db_xref="GI:145698289" /db_xref="ASAP:ABE-0007526" /db_xref="UniProtKB/Swiss-Prot:P0AFF0" /db_xref="EcoGene:EG12093" /db_xref="GeneID:945136" /translation="MTITPQNLIALLPLLIVGLTVVVVMLSIAWRRNHFLNATLSVIG LNAALVSLWFVGQAGAMDVTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNK DEFYLLVLIAALGGILLANANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYT ILSAAASSFLLFGMALVYAQSGDLSFVALGKNLGDGMLNEPLLLAGFGLMIVGLGFKL SLVPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAII AFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQTGEMSMEAVGVYLAGYL FSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGF IGKFYVLAVGVQAHLWWLVGAVVVGSAIGLYYYLRVAVSLYLHAPEQPGRDAPSNWQY SAGGIVVLISALLVLVLGVWPQPLISIVRLAMPLM" gene complement(2391512..2393041) /gene="nuoM" /locus_tag="b2277" /gene_synonym="ECK2271; JW2272; nuoA" /db_xref="EcoGene:EG11773" /db_xref="GeneID:947731" CDS complement(2391512..2393041) /gene="nuoM" /locus_tag="b2277" /gene_synonym="ECK2271; JW2272; nuoA" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration" /note="NADH dehydrogenase I chain M" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase, membrane subunit M" /protein_id="NP_416780.1" /db_xref="GI:16130212" /db_xref="ASAP:ABE-0007529" /db_xref="UniProtKB/Swiss-Prot:P0AFE8" /db_xref="EcoGene:EG11773" /db_xref="GeneID:947731" /translation="MLLPWLILIPFIGGFLCWQTERFGVKVPRWIALITMGLTLALSL QLWLQGGYSLTQSAGIPQWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAV LCSWKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHK ASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSG VEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSL PLFPNASAEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGS QLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFA VATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKS QIASQELPGMSLRELFMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQWFVNSVTTTR P" repeat_region 2393131..2393166 /note="REP166 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2393205..2395046) /gene="nuoL" /locus_tag="b2278" /gene_synonym="ECK2272; JW2273" /db_xref="EcoGene:EG12092" /db_xref="GeneID:945540" CDS complement(2393205..2395046) /gene="nuoL" /locus_tag="b2278" /gene_synonym="ECK2272; JW2273" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration" /note="NADH dehydrogenase I chain L" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase, membrane subunit L" /protein_id="NP_416781.1" /db_xref="GI:16130213" /db_xref="ASAP:ABE-0007532" /db_xref="UniProtKB/Swiss-Prot:P33607" /db_xref="EcoGene:EG12092" /db_xref="GeneID:945540" /translation="MNMLALTIILPLIGFVLLAFSRGRWSENVSAIVGVGSVGLAALV TAFIGVDFFANGEQTYSQPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMY ASWYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTD PKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWA TLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMT PEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFH LMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYLCFLVGGAALSALPLV TAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIHAHAVKG VTHSLPLIVLLILSTFVGALIVPPLQGVLPQTTELAHGSMLTLEITSGVVAVVGILLA AWLWLGKRTLVTSIANSAPGRLLGTWWYNAWGFDWLYDKVFVKPFLGIAWLLKRDPLN SMMNIPAVLSRFAGKGLLLSENGYLRWYVASMSIGAVVVLALLMVLR" gene complement(2395043..2395345) /gene="nuoK" /locus_tag="b2279" /gene_synonym="ECK2273; JW2274" /db_xref="EcoGene:EG12091" /db_xref="GeneID:947580" CDS complement(2395043..2395345) /gene="nuoK" /locus_tag="b2279" /gene_synonym="ECK2273; JW2274" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration" /note="NADH dehydrogenase I chain K" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase, membrane subunit K" /protein_id="NP_416782.1" /db_xref="GI:16130214" /db_xref="ASAP:ABE-0007534" /db_xref="UniProtKB/Swiss-Prot:P0AFE4" /db_xref="EcoGene:EG12091" /db_xref="GeneID:947580" /translation="MIPLQHGLILAAILFVLGLTGLVIRRNLLFMLIGLEIMINASAL AFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG" gene complement(2395342..2395896) /gene="nuoJ" /locus_tag="b2280" /gene_synonym="ECK2274; JW2275" /db_xref="EcoGene:EG12090" /db_xref="GeneID:946756" CDS complement(2395342..2395896) /gene="nuoJ" /locus_tag="b2280" /gene_synonym="ECK2274; JW2275" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration" /note="NADH dehydrogenase I chain J" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase, membrane subunit J" /protein_id="NP_416783.1" /db_xref="GI:16130215" /db_xref="ASAP:ABE-0007536" /db_xref="UniProtKB/Swiss-Prot:P0AFE0" /db_xref="EcoGene:EG12090" /db_xref="GeneID:946756" /translation="MEFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFF SLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAI MLVVIVYAILGVNDQGIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR EERAGEVLSNRKDDSAKRKTEEHA" gene complement(2395908..2396450) /gene="nuoI" /locus_tag="b2281" /gene_synonym="ECK2275; JW2276" /db_xref="EcoGene:EG12089" /db_xref="GeneID:946757" CDS complement(2395908..2396450) /gene="nuoI" /locus_tag="b2281" /gene_synonym="ECK2275; JW2276" /EC_number="1.6.5.3" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /experiment="N-terminus verified by Edman degradation: PMID 9298646,11416161" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration" /note="NADH dehydrogenase I chain I" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase, chain I" /protein_id="NP_416784.1" /db_xref="GI:16130216" /db_xref="ASAP:ABE-0007539" /db_xref="UniProtKB/Swiss-Prot:P0AFD6" /db_xref="EcoGene:EG12089" /db_xref="GeneID:946757" /translation="MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRY RGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFC GLCEEACPTTAIQLTPDFEMGEYKRQDLVYEKEDLLISGPGKYPEYNFYRMAGMAIDG KDKGEAENEAKPIDVKSLLP" gene complement(2396465..2397442) /gene="nuoH" /locus_tag="b2282" /gene_synonym="ECK2276; JW2277" /db_xref="EcoGene:EG12088" /db_xref="GeneID:946761" CDS complement(2396465..2397442) /gene="nuoH" /locus_tag="b2282" /gene_synonym="ECK2276; JW2277" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration" /note="NADH dehydrogenase I chain H" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase, membrane subunit H" /protein_id="NP_416785.1" /db_xref="GI:16130217" /db_xref="ASAP:ABE-0007541" /db_xref="UniProtKB/Swiss-Prot:P0AFD4" /db_xref="EcoGene:EG12088" /db_xref="GeneID:946761" /translation="MSWISPELIEILLTILKAVVILLVVVTCGAFMSFGERRLLGLFQ NRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVP VSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFL GLSLMGVVAQAGSFNMTDIVNSQAHVWNVIPQFFGFITFAIAGVAVCHRHPFDQPEAE QELADGYHIEYSGMKFGLFFVGEYIGIVTISALMVTLFFGGWQGPLLPPFIWFALKTA FFMMMFILIRASLPRPRYDQVMSFGWKICLPLTLINLLVTAAVILWQAQ" gene complement(2397439..2400165) /gene="nuoG" /locus_tag="b2283" /gene_synonym="ECK2277; JW2278" /db_xref="EcoGene:EG12087" /db_xref="GeneID:946762" CDS complement(2397439..2400165) /gene="nuoG" /locus_tag="b2283" /gene_synonym="ECK2277; JW2278" /EC_number="1.6.5.3" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration" /note="NADH dehydrogenase I chain G" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase, chain G" /protein_id="NP_416786.4" /db_xref="GI:145698290" /db_xref="ASAP:ABE-0007543" /db_xref="UniProtKB/Swiss-Prot:P33602" /db_xref="EcoGene:EG12087" /db_xref="GeneID:946762" /translation="MATIHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGA CRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHD CPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRY YKDYADGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEICPTGVFTDKTHSERYNRK WDMQFAPSICQQCSIGCNISPGERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLK DRPRQPVQRRGDDFITLNAEQAMQGAADILRQSKKVIGIGSPRASVESNFALRELVGE ENFYTGIAHGEQERLQLALKVLREGGIYTPALREIESYDAVLVLGEDVTQTGARVALA VRQAVKGKAREMAAAQKVADWQIAAILNIGQRAKHPLFVTNVDDTRLDDIAAWTYRAP VEDQARLGFAIAHALDNSAPAVDGIEPELQSKIDVIVQALAGAKKPLIISGTNAGSLE VIQAAANVAKALKGRGADVGITMIARSVNSMGLGIMGGGSLEEALTELETGRADAVVV LENDLHRHASAIRVNAALAKAPLVMVVDHQRTAIMENAHLVLSAASFAESDGTVINNE GRAQRFFQVYDPAYYDSKTVMLESWRWLHSLHSTLLSREVDWTQLDHVIDAVVAKIPE LAGIKDAAPDATFRIRGQKLAREPHRYSGRTAMRANISVHEPRQPQDIDTMFTFSMEG NNQPTAHRSQVPFAWAPGWNSPQAWNKFQDEVGGKLRFGDPGVRLFETSENGLDYFTS VPARFQPQDGKWRIAPYYHLFGSDELSQRAPVFQSRMPQPYIKLNPADAAKLGVNAGT RVSFSYDGNTVTLPVEIAEGLTAGQVGLPMGMSGIAPVLAGAHLEDLKEAQQ" gene complement(2400218..2401555) /gene="nuoF" /locus_tag="b2284" /gene_synonym="ECK2278; JW2279; nuoB" /db_xref="EcoGene:EG11774" /db_xref="GeneID:946753" CDS complement(2400218..2401555) /gene="nuoF" /locus_tag="b2284" /gene_synonym="ECK2278; JW2279; nuoB" /EC_number="1.6.5.3" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /experiment="N-terminus verified by Edman degradation: PMID 11416161,11997136" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration" /note="NADH dehydrogenase I chain F" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase, chain F" /protein_id="NP_416787.1" /db_xref="GI:16130219" /db_xref="ASAP:ABE-0007545" /db_xref="UniProtKB/Swiss-Prot:P31979" /db_xref="EcoGene:EG11774" /db_xref="GeneID:946753" /translation="MKNIIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTG LSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDR LLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNI MGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGAWGKPTCVNN VETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILED YAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAGSRLGTALAMAVDHEIN MVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLG PGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQPFSNTHLINGIQPNLLKERW" gene complement(2401552..2402052) /gene="nuoE" /locus_tag="b2285" /gene_synonym="ECK2279; JW2280" /db_xref="EcoGene:EG12086" /db_xref="GeneID:946746" CDS complement(2401552..2402052) /gene="nuoE" /locus_tag="b2285" /gene_synonym="ECK2279; JW2280" /EC_number="1.6.5.3" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /experiment="N-terminus verified by Edman degradation: PMID 11416161,11997136" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration" /note="NADH dehydrogenase I chain E" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase, chain E" /protein_id="NP_416788.1" /db_xref="GI:16130220" /db_xref="ASAP:ABE-0007547" /db_xref="UniProtKB/Swiss-Prot:P0AFD1" /db_xref="EcoGene:EG12086" /db_xref="GeneID:946746" /translation="MHENQQPQTEAFELSAAEREAIEHEMHHYEDPRAASIEALKIVQ KQRGWVPDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGY QGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPE LLERYK" gene complement(2402055..2403845) /gene="nuoC" /locus_tag="b2286" /gene_synonym="ECK2280; JW5375; nuoCD; nuoD" /db_xref="EcoGene:EG12084" /db_xref="GeneID:946759" CDS complement(2402055..2403845) /gene="nuoC" /locus_tag="b2286" /gene_synonym="ECK2280; JW5375; nuoCD; nuoD" /EC_number="1.6.5.3" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration" /note="NADH dehydrogenase I chain C, D" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase, fused CD subunit" /protein_id="NP_416789.2" /db_xref="GI:145698291" /db_xref="ASAP:ABE-0007549" /db_xref="UniProtKB/Swiss-Prot:P33599" /db_xref="EcoGene:EG12084" /db_xref="GeneID:946759" /translation="MTDLTAQEPAWQTRDHLDDPVIGELRNRFGPDAFTVQATRTGVP VVWIKREQLLEVGDFLKKLPKPYVMLFDLHGMDERLRTHREGLPAADFSVFYHLISID RNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMMPQTW KGHPLRKDYPARATEFSPFELTKAKQDLEMEALTFKPEEWGMKRGTENEDFMFLNLGP NHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGG CVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFF AFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLASYEK AALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFEI PVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTLQHI ETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRVRTPSFAHLQ QIPAAIRGSLVSDLIVYLGSIDFVMSDVDR" gene complement(2403951..2404613) /gene="nuoB" /locus_tag="b2287" /gene_synonym="ECK2281; JW5875" /db_xref="EcoGene:EG12083" /db_xref="GeneID:946738" CDS complement(2403951..2404613) /gene="nuoB" /locus_tag="b2287" /gene_synonym="ECK2281; JW5875" /EC_number="1.6.5.3" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /experiment="N-terminus verified by Edman degradation: PMID 7607227,11997136" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration" /note="NADH dehydrogenase I chain B" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase, chain B" /protein_id="NP_416790.1" /db_xref="GI:16130222" /db_xref="ASAP:ABE-0007551" /db_xref="UniProtKB/Swiss-Prot:P0AFC7" /db_xref="EcoGene:EG12083" /db_xref="GeneID:946738" /translation="MDYTLTRIDPNGENDRYPLQKQEIVTDPLEQEVNKNVFMGKLND MVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTC FTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPP RPEAYMQALMLLQESIGKERRPLSWVVGDQGVYRANMQSERERKRGERIAVTNLRTPD EI" gene complement(2404629..2405072) /gene="nuoA" /locus_tag="b2288" /gene_synonym="ECK2282; JW2283" /db_xref="EcoGene:EG12082" /db_xref="GeneID:946764" CDS complement(2404629..2405072) /gene="nuoA" /locus_tag="b2288" /gene_synonym="ECK2282; JW2283" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009060 - aerobic respiration; GO:0009061 - anaerobic respiration" /note="NADH dehydrogenase I chain A" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase, membrane subunit A" /protein_id="NP_416791.3" /db_xref="GI:49176207" /db_xref="ASAP:ABE-0007553" /db_xref="UniProtKB/Swiss-Prot:P0AFC3" /db_xref="EcoGene:EG12082" /db_xref="GeneID:946764" /translation="MSMSTSTEVIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARAR SKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVE AAIFIFVLLAGLVYLVRIGALDWTPARSRRERMNPETNSIANRQR" gene complement(2405703..2406641) /gene="lrhA" /locus_tag="b2289" /gene_synonym="ECK2283; genR; hexA; JW2284" /db_xref="EcoGene:EG12123" /db_xref="GeneID:946769" CDS complement(2405703..2406641) /gene="lrhA" /locus_tag="b2289" /gene_synonym="ECK2283; genR; hexA; JW2284" /function="regulator; Energy metabolism, carbon: Aerobic respiration" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0009060 - aerobic respiration; GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="transcriptional repressor of flagellar, motility and chemotaxis genes" /protein_id="NP_416792.1" /db_xref="GI:16130224" /db_xref="ASAP:ABE-0007555" /db_xref="UniProtKB/Swiss-Prot:P36771" /db_xref="EcoGene:EG12123" /db_xref="GeneID:946769" /translation="MISANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQ QMQRLEQLVGKELFARHGRNKLLTEHGIQLLGYARKILRFNDEACSSLMFSNLQGVLT IGASDESADTILPFLLNRVSSVYPKLALDVRVKRNAYMAEMLESQEVDLMVTTHRPSA FKALNLRTSPTHWYCAAEYILQKGEPIPLVLLDDPSPFRDMVLATLNKADIPWRLAYV ASTLPAVRAAVKAGLGVTARPVEMMSPDLRVLSGVDGLPPLPDTEYLLCYDPSSNNEL AQVIYQAMESYHNPWQYSPMSAPEGDDSLLIERDIE" gene 2407561..2408778 /gene="alaA" /locus_tag="b2290" /gene_synonym="ECK2284; JW2287; yfbQ" /db_xref="EcoGene:EG14101" /db_xref="GeneID:946772" CDS 2407561..2408778 /gene="alaA" /locus_tag="b2290" /gene_synonym="ECK2284; JW2287; yfbQ" /EC_number="2.6.1.2" /function="enzyme; Amino acid biosynthesis: Alanine" /note="putative aminotransferase" /codon_start=1 /transl_table=11 /product="glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase" /protein_id="NP_416793.1" /db_xref="GI:16130225" /db_xref="ASAP:ABE-0007560" /db_xref="UniProtKB/Swiss-Prot:P0A959" /db_xref="EcoGene:EG14101" /db_xref="GeneID:946772" /translation="MSPIEKSSKLENVCYDIRGPVLKEAKRLEEEGNKVLKLNIGNPA PFGFDAPDEILVDVIRNLPTAQGYCDSKGLYSARKAIMQHYQARGMRDVTVEDIYIGN GVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDD IRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDA EHHSIAPLAPDLLTITFNGLSKTYRVAGFRQGWMVLNGPKKHAKGYIEGLEMLASMRL CANVPAQHAIQTALGGYQSISEFITPGGRLYEQRNRAWELINDIPGVSCVKPRGALYM FPKIDAKRFNIHDDQKMVLDFLLQEKVLLVQGTAFNWPWPDHFRIVTLPRVDDIELSL SKFARFLSGYHQL" repeat_region 2408792..2408810 /note="REP167 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 2408862..2409461 /gene="yfbR" /locus_tag="b2291" /gene_synonym="ECK2285; JW2288" /db_xref="EcoGene:EG14102" /db_xref="GeneID:946771" CDS 2408862..2409461 /gene="yfbR" /locus_tag="b2291" /gene_synonym="ECK2285; JW2288" /function="phenotype; Not classified" /note="putative alpha helix protein" /codon_start=1 /transl_table=11 /product="5'-nucleotidase" /protein_id="NP_416794.1" /db_xref="GI:16130226" /db_xref="ASAP:ABE-0007563" /db_xref="UniProtKB/Swiss-Prot:P76491" /db_xref="EcoGene:EG14102" /db_xref="GeneID:946771" /translation="MKQSHFFAHLSRLKLINRWPLMRNVRTENVSEHSLQVAMVAHAL AAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQ KLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYLKCLEELAAGNNEFLLAK TRLEATLEARRSQEMDYFMEIFVPSFHLSLDEISQDSPL" repeat_region 2409496..2409514 /note="REP168 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2409520..2411352) /gene="yfbS" /locus_tag="b2292" /gene_synonym="ECK2286; JW2289" /db_xref="EcoGene:EG14103" /db_xref="GeneID:946766" CDS complement(2409520..2411352) /gene="yfbS" /locus_tag="b2292" /gene_synonym="ECK2286; JW2289" /function="putative transport; Not classified" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="NP_416795.1" /db_xref="GI:16130227" /db_xref="ASAP:ABE-0007565" /db_xref="UniProtKB/Swiss-Prot:P0AFU2" /db_xref="EcoGene:EG14103" /db_xref="GeneID:946766" /translation="MNGELIWVLSLLAVAIVLFATGRVRMDAVALFVIVAFALSGTLT VPEVFSGFSDPNVVLIAALFIIGDGLVRTGVATVMGTWLVKVAGNSEIKMLVLLMLTV AGLGAFMSSTGVVAIFIPVVLSVAMRMQTSPSRLMMPLSFAGLISGMMTLVATPPNLV VNSELLREGYHGFSFFSVTPIGLVVLVLGILYMLVMRFMLKGDTQTPQREGWTRRTFR DLIREYRLTGRARRLAIRPGSPMIGQRLDDLKLRERYGANVIGVERWRRFRRVIVNVN GVSEFRARDVLLIDMSAADVDLRQFCSEQLLEPMVLRGEYFSDQALDVGMAEISLIPE SELIGKSVREIGFRTRYGLNVVGLKRNGVALEGSLADEPLLLGDIILVVGNWKLIGML AKQGRDFVALNLPEEVSEASPAHSQAPHAIFCLVLMVALMLTDEIPNPVAAIIACLLM GKFRCIDAESAYKSIHWPSIILIVGMMPFAVALQKTGGVALAVKGLMDIGGGYGPHMM LGCLFVLSAVIGLFISNTATAVLMAPIALAAAKTMGVSPYPFAMVVAMAASAAFMTPV SSPVNTLVLGPGNYSFSDFVKLGVPFTIIVMAVCVVMIPMLFPF" gene complement(2411439..2412089) /gene="yfbT" /locus_tag="b2293" /gene_synonym="ECK2287; JW5376" /db_xref="EcoGene:EG14104" /db_xref="GeneID:946777" CDS complement(2411439..2412089) /gene="yfbT" /locus_tag="b2293" /gene_synonym="ECK2287; JW5376" /function="putative enzyme; Not classified" /note="putative phosphatase" /codon_start=1 /transl_table=11 /product="sugar phosphatas" /protein_id="NP_416796.2" /db_xref="GI:90111414" /db_xref="ASAP:ABE-0007567" /db_xref="UniProtKB/Swiss-Prot:P77625" /db_xref="EcoGene:EG14104" /db_xref="GeneID:946777" /translation="MRCKGFLFDLDGTLVDSLPAVERAWSNWARRHGLAPEEVLAFIH GKQAITSLRHFMAGKSEADIAAEFTRLEHIEATETEGITALPGAIALLSHLNKAGIPW AIVTSGSMPVARARHKIAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVV VEDAPAGVLSGLAAGCHVIAVNAPADTPRLNEVDLVLHSLEQITVTKQPNGDVIIQ" gene complement(2412100..2412594) /gene="yfbU" /locus_tag="b2294" /gene_synonym="ECK2288; JW2291" /db_xref="EcoGene:EG14105" /db_xref="GeneID:946767" CDS complement(2412100..2412594) /gene="yfbU" /locus_tag="b2294" /gene_synonym="ECK2288; JW2291" /codon_start=1 /transl_table=11 /product="UPF0304 family protein" /protein_id="NP_416797.2" /db_xref="GI:90111415" /db_xref="ASAP:ABE-0007571" /db_xref="UniProtKB/Swiss-Prot:P0A8W8" /db_xref="EcoGene:EG14105" /db_xref="GeneID:946767" /translation="MEMTNAQRLILSNQYKMMTMLDPANAERYRRLQTIIERGYGLQM RELDREFGELKEETCRTIIDIMEMYHALHVSWSNLQDQQSIDERRVTFLGFDAATEAR YLGYVRFMVNVEGRYTHFDAGTHGFNAQTPMWEKYQRMLNVWHACPRQYHLSANEINQ IINA" gene complement(2412677..2413132) /gene="yfbV" /locus_tag="b2295" /gene_synonym="ECK2289; JW2292" /db_xref="EcoGene:EG14106" /db_xref="GeneID:946774" CDS complement(2412677..2413132) /gene="yfbV" /locus_tag="b2295" /gene_synonym="ECK2289; JW2292" /codon_start=1 /transl_table=11 /product="UPF0208 family inner membrane protein" /protein_id="NP_416798.1" /db_xref="GI:16130230" /db_xref="ASAP:ABE-0007575" /db_xref="UniProtKB/Swiss-Prot:P0A8D9" /db_xref="EcoGene:EG14106" /db_xref="GeneID:946774" /translation="MSTPDNRSVNFFSLFRRGQHYSKTWPLEKRLAPVFVENRVIKMT RYAIRFMPPIAVFTLCWQIALGGQLGPAVATALFALSLPMQGLWWLGKRSVTPLPPAI LNWFYEVRGKLQESGQVLAPVEGKPDYQALADTLKRAFKQLDKTFLDDL" gene 2413470..2414672 /gene="ackA" /locus_tag="b2296" /gene_synonym="ECK2290; JW2293" /db_xref="EcoGene:EG10027" /db_xref="GeneID:946775" CDS 2413470..2414672 /gene="ackA" /locus_tag="b2296" /gene_synonym="ECK2290; JW2293" /EC_number="2.7.2.-" /EC_number="2.7.2.1" /function="enzyme; Energy metabolism, carbon: Electron transport" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0045733 - acetate catabolic process; GO:0016052 - carbohydrate catabolic process; GO:0009063 - cellular amino acid catabolic process; GO:0042867 - pyruvate catabolic process" /note="acetate kinase" /codon_start=1 /transl_table=11 /product="acetate kinase A and propionate kinase 2" /protein_id="NP_416799.1" /db_xref="GI:16130231" /db_xref="ASAP:ABE-0007579" /db_xref="UniProtKB/Swiss-Prot:P0A6A3" /db_xref="EcoGene:EG10027" /db_xref="GeneID:946775" /translation="MSSKLVLVLNCGSSSLKFAIIDAVNGEEYLSGLAECFHLPEARI KWKMDGNKQEAALGAGAAHSEALNFIVNTILAQKPELSAQLTAIGHRIVHGGEKYTSS VVIDESVIQGIKDAASFAPLHNPAHLIGIEEALKSFPQLKDKNVAVFDTAFHQTMPEE SYLYALPYNLYKEHGIRRYGAHGTSHFYVTQEAAKMLNKPVEELNIITCHLGNGGSVS AIRNGKCVDTSMGLTPLEGLVMGTRSGDIDPAIIFHLHDTLGMSVDAINKLLTKESGL LGLTEVTSDCRYVEDNYATKEDAKRAMDVYCHRLAKYIGAYTALMDGRLDAVVFTGGI GENAAMVRELSLGKLGVLGFEVDHERNLAARFGKSGFINKEGTRPAVVIPTNEELVIA QDASRLTA" gene 2414747..2416891 /gene="pta" /locus_tag="b2297" /gene_synonym="ECK2291; JW2294" /db_xref="EcoGene:EG20173" /db_xref="GeneID:946778" CDS 2414747..2416891 /gene="pta" /locus_tag="b2297" /gene_synonym="ECK2291; JW2294" /EC_number="2.3.1.8" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0045733 - acetate catabolic process; GO:0016052 - carbohydrate catabolic process; GO:0009063 - cellular amino acid catabolic process; GO:0042867 - pyruvate catabolic process" /note="phosphotransacetylase" /codon_start=1 /transl_table=11 /product="phosphate acetyltransferase" /protein_id="NP_416800.1" /db_xref="GI:16130232" /db_xref="ASAP:ABE-0007582" /db_xref="UniProtKB/Swiss-Prot:P0A9M8" /db_xref="EcoGene:EG20173" /db_xref="GeneID:946778" /translation="MSRIIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPR TGGDAPDQTTTIVRANSSTTTAAEPLKMSYVEGLLSSNQKDVLMEEIVANYHANTKDA EVVLVEGLVPTRKHQFAQSLNYEIAKTLNAEIVFVMSQGTDTPEQLKERIELTRNSFG GAKNTNITGVIVNKLNAPVDEQGRTRPDLSEIFDDSSKAKVNNVDPAKLQESSPLPVL GAVPWSFDLIATRAIDMARHLNATIINEGDINTRRVKSVTFCARSIPHMLEHFRAGSL LVTSADRPDVLVAACLAAMNGVEIGALLLTGGYEMDARISKLCERAFATGLPVFMVNT NTWQTSLSLQSFNLEVPVDDHERIEKVQEYVANYINADWIESLTATSERSRRLSPPAF RYQLTELARKAGKRIVLPEGDEPRTVKAAAICAERGIATCVLLGNPAEINRVAASQGV ELGAGIEIVDPEVVRESYVGRLVELRKNKGMTETVAREQLEDNVVLGTLMLEQDEVDG LVSGAVHTTANTIRPPLQLIKTAPGSSLVSSVFFMLLPEQVYVYGDCAINPDPTAEQL AEIAIQSADSAAAFGIEPRVAMLSYSTGTSGAGSDVEKVREATRLAQEKRPDLMIDGP LQYDAAVMADVAKSKAPNSPVAGRATVFIFPDLNTGNTTYKAVQRSADLISIGPMLQG MRKPVNDLSRGALVDDIVYTIALTAIQSAQQQ" gene 2417081..2418601 /gene="yfcC" /locus_tag="b2298" /gene_synonym="ECK2292; JW2295" /db_xref="EcoGene:EG12607" /db_xref="GeneID:946780" CDS 2417081..2418601 /gene="yfcC" /locus_tag="b2298" /gene_synonym="ECK2292; JW2295" /function="putative enzyme; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /note="putative S-transferase" /codon_start=1 /transl_table=11 /product="putative inner membrane transporter; C4-dicarboxylate anaerobic carrier family protein" /protein_id="NP_416801.2" /db_xref="GI:90111416" /db_xref="ASAP:ABE-0007585" /db_xref="UniProtKB/Swiss-Prot:P39263" /db_xref="EcoGene:EG12607" /db_xref="GeneID:946780" /translation="MSAITESKPTRRWAMPDTLVIIFFVAILTSLATWVVPVGMFDSQ EVQYQVDGQTKTRKVVDPHSFRILTNEAGEPEYHRVQLFTTGDERPGLMNFPFEGLTS GSKYGTAVGIIMFMLVIGGAFGIVMRTGTIDNGILALIRHTRGNEILFIPALFILFSL GGAVFGMGEEAVAFAIIIAPLMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQ GIAGVPVLSGSGLRIVVWVIATLIGLIFTMVYASRVKKNPLLSRVHESDRFFREKQAD VEQRPFTFGDWLVLIVLTAVMVWVIWGVIVNAWFIPEIASQFFTMGLVIGIIGVVFRL NGMTVNTMASSFTEGARMMIAPALLVGFAKGILLLVGNGEAGDASVLNTILNSIANAI SGLDNAVAAWFMLLFQAVFNFFVTSGSGQAALTMPLLAPLGDLVGVNRQVTVLAFQFG DGFSHIIYPTSASLMATLGVCRVDFRNWLKVGATLLGLLFIMSSVVVIGAQLMGYH" gene complement(2418634..2419176) /gene="yfcD" /locus_tag="b2299" /gene_synonym="ECK2293; JW2296" /db_xref="EcoGene:EG14107" /db_xref="GeneID:946783" CDS complement(2418634..2419176) /gene="yfcD" /locus_tag="b2299" /gene_synonym="ECK2293; JW2296" /function="putative regulator; Not classified" /note="putative regulator" /codon_start=1 /transl_table=11 /product="putative NUDIX hydrolase" /protein_id="NP_416802.1" /db_xref="GI:16130234" /db_xref="ASAP:ABE-0007587" /db_xref="UniProtKB/Swiss-Prot:P65556" /db_xref="EcoGene:EG14107" /db_xref="GeneID:946783" /translation="MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVV HDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAE HGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKA LALWMKRNAKNEAVETETAE" gene complement(2419234..2419788) /gene="yfcE" /locus_tag="b2300" /gene_synonym="ECK2294; JW5377" /db_xref="EcoGene:EG14108" /db_xref="GeneID:946755" CDS complement(2419234..2419788) /gene="yfcE" /locus_tag="b2300" /gene_synonym="ECK2294; JW5377" /codon_start=1 /transl_table=11 /product="phosphodiesterase activity on bis-pNPP" /protein_id="NP_416803.3" /db_xref="GI:49176208" /db_xref="ASAP:ABE-0007589" /db_xref="UniProtKB/Swiss-Prot:P67095" /db_xref="EcoGene:EG14108" /db_xref="GeneID:946755" /translation="MMKLMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPR NALPEGYAPAKVAERLNEVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLF LTHGHLFGPENLPALNQNDVLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGNPASYGM LDNDVLSVIALNDQSIIAQVAINP" gene complement(2419841..2420485) /gene="yfcF" /locus_tag="b2301" /gene_synonym="ECK2295; JW2298" /db_xref="EcoGene:EG14109" /db_xref="GeneID:946749" CDS complement(2419841..2420485) /gene="yfcF" /locus_tag="b2301" /gene_synonym="ECK2295; JW2298" /codon_start=1 /transl_table=11 /product="glutathione S-transferase" /protein_id="NP_416804.1" /db_xref="GI:16130236" /db_xref="ASAP:ABE-0007593" /db_xref="UniProtKB/Swiss-Prot:P77544" /db_xref="EcoGene:EG14109" /db_xref="GeneID:946749" /translation="MSKPAITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGE HLQPTWQGYGQTRRVPLLQIDDFELSESSAIAEYLEDRFAPPTWERIYPLDLENRARA RQIQAWLRSDLMPIREERPTDVVFAGAKKAPLTAEGKASAEKLFAMAEHLLVLGQPNL FGEWCIADTDLALMINRLVLHGDEVPERLVDYATFQWQRASVQRFIALSAKQSG" gene 2420621..2421268 /gene="yfcG" /locus_tag="b2302" /gene_synonym="ECK2296; JW2299" /db_xref="EcoGene:EG14110" /db_xref="GeneID:946763" CDS 2420621..2421268 /gene="yfcG" /locus_tag="b2302" /gene_synonym="ECK2296; JW2299" /note="putative S-transferase" /codon_start=1 /transl_table=11 /product="GSH-dependent disulfide bond oxidoreductase" /protein_id="NP_416805.1" /db_xref="GI:16130237" /db_xref="ASAP:ABE-0007600" /db_xref="UniProtKB/Swiss-Prot:P77526" /db_xref="EcoGene:EG14110" /db_xref="GeneID:946763" /translation="MIDLYFAPTPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFL RISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLAEKTGLFLSHETRERAATLQWLF WQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGENYS IADIACWPWVNAWTRQRIDLAMYPAVKNWHERIRSRPATGQALLKAQLGDERSDS" gene 2421325..2421687 /gene="folX" /locus_tag="b2303" /gene_synonym="ECK2297; JW2300" /db_xref="EcoGene:EG14263" /db_xref="GeneID:946781" CDS 2421325..2421687 /gene="folX" /locus_tag="b2303" /gene_synonym="ECK2297; JW2300" /EC_number="5.-.-.-" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /note="D-erythro-7,8-dihydroneopterin tri P epimerase" /codon_start=1 /transl_table=11 /product="D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase" /protein_id="NP_416806.1" /db_xref="GI:16130238" /db_xref="ASAP:ABE-0007603" /db_xref="UniProtKB/Swiss-Prot:P0AC19" /db_xref="EcoGene:EG14263" /db_xref="GeneID:946781" /translation="MAQPAAIIRIKNLRLRTFIGIKEEEINNRQDIVINVTIHYPADK ARTSEDINDALNYRTVTKNIIQHVENNRFSLLEKLTQDVLDIAREHHWVTYAEVEIDK LHALRYADSVSMTLSWQR" gene 2421708..2422601 /gene="yfcH" /locus_tag="b2304" /gene_synonym="ECK2298; JW2301" /db_xref="EcoGene:EG14111" /db_xref="GeneID:946784" CDS 2421708..2422601 /gene="yfcH" /locus_tag="b2304" /gene_synonym="ECK2298; JW2301" /function="putative enzyme; Not classified" /note="putative sugar nucleotide epimerase" /codon_start=1 /transl_table=11 /product="putative NAD-dependent nucleotide-sugar epimerase" /protein_id="NP_416807.1" /db_xref="GI:16130239" /db_xref="ASAP:ABE-0007605" /db_xref="UniProtKB/Swiss-Prot:P77775" /db_xref="EcoGene:EG14111" /db_xref="GeneID:946784" /translation="MNIVITGGTGLIGRHLIPRLLELGHQITVVTRNPQKASSVLGPR VTLWQGLADQSNLNGVDAVINLAGEPIADKRWTHEQKERLCQSRWNITQKLVDLINAS DTPPSVLISGSATGYYGDLGEVVVTEEEPPHNEFTHKLCARWEEIACRAQSDKTRVCL LRTGVVLAPDGGILGKMLPPFRLGLGGPIGSGRQYLAWIHIDDMVNGILWLLDNELRG PFNMVSPYPVRNEQFAHALGHALHRPAILRVPATAIRLLMGESSVLVLGGQRALPKRL EEAGFAFRWYDLEEALADVVR" gene complement(2422649..2423539) /gene="yfcI" /locus_tag="b2305" /gene_synonym="ECK2299; JW2302" /db_xref="EcoGene:EG14112" /db_xref="GeneID:946787" CDS complement(2422649..2423539) /gene="yfcI" /locus_tag="b2305" /gene_synonym="ECK2299; JW2302" /codon_start=1 /transl_table=11 /product="transposase_31 family protein" /protein_id="NP_416808.1" /db_xref="GI:16130240" /db_xref="ASAP:ABE-0007607" /db_xref="UniProtKB/Swiss-Prot:P77768" /db_xref="EcoGene:EG14112" /db_xref="GeneID:946787" /translation="MTISTTSTPHDAVFKSFLRHPDTARDFIDIHLPAPLRKLCDLTT LKLEPNSFIDEDLRQYYSDLLWSVKTQEGVGYIYVVIEHQSKPEELMAFRMMRYSIAA MQNHLDAGYKELPLVLPMLFYHGCRSPYPYSLCWLDEFAEPAIARKIYSSAFPLVDIT VVPDDEIMQHRKMALLELIQKHIRQRDLLGLVDQIVSLLVTGNTNDRQLKALFNYVLQ TGDAQRFRAFIGEIAERAPQEKEKLMTIADRLREEGAMQGKHEEALRIAQEMLDRGLD RELVMMVTRLSPDDLIAQSH" gene complement(2423736..2424509) /gene="hisP" /locus_tag="b2306" /gene_synonym="ECK2300; JW2303" /db_xref="EcoGene:EG10452" /db_xref="GeneID:946789" CDS complement(2423736..2424509) /gene="hisP" /locus_tag="b2306" /gene_synonym="ECK2300; JW2303" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006526 - arginine biosynthetic process; GO:0009063 - cellular amino acid catabolic process; GO:0000105 - histidine biosynthetic process; GO:0009089 - lysine biosynthetic process via diaminopimelate" /note="ATP-binding component of histidine transport" /codon_start=1 /transl_table=11 /product="histidine ABC transporter ATPase" /protein_id="NP_416809.1" /db_xref="GI:16130241" /db_xref="ASAP:ABE-0007610" /db_xref="UniProtKB/Swiss-Prot:P07109" /db_xref="EcoGene:EG10452" /db_xref="GeneID:946789" /translation="MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGK STFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN LWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV STHVIFLHQGKIEEEGAPEQLFGNPQSPRLQRFLKGSLK" gene complement(2424517..2425233) /gene="hisM" /locus_tag="b2307" /gene_synonym="ECK2301; JW2304" /db_xref="EcoGene:EG10007" /db_xref="GeneID:946790" CDS complement(2424517..2425233) /gene="hisM" /locus_tag="b2307" /gene_synonym="ECK2301; JW2304" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006526 - arginine biosynthetic process; GO:0009089 - lysine biosynthetic process via diaminopimelate" /note="histidine transport, membrane protein M; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="histidine ABC transporter permease" /protein_id="NP_416810.1" /db_xref="GI:16130242" /db_xref="ASAP:ABE-0007613" /db_xref="UniProtKB/Swiss-Prot:P0AEU3" /db_xref="EcoGene:EG10007" /db_xref="GeneID:946790" /translation="MIEILHEYWKPLLWTDGYRFTGVAITLWLLILSVVIGGVLALFL AIGRVSSNKYIQFPIWLFTYIFRGTPLYVQLLVFYSGMYTLEIVKGTEFLNAFFRSGL NCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSTFKMYRCIILPSALRIAL PAYSNEVILMLHSTALAFTATVPDLLKIARDINAATYQPFTAFGIAAVLYLIISYVLI SLFRRAEKRWLQHVKPSSTH" gene complement(2425230..2425916) /gene="hisQ" /locus_tag="b2308" /gene_synonym="ECK2302; JW2305" /db_xref="EcoGene:EG12125" /db_xref="GeneID:947235" CDS complement(2425230..2425916) /gene="hisQ" /locus_tag="b2308" /gene_synonym="ECK2302; JW2305" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006526 - arginine biosynthetic process; GO:0009089 - lysine biosynthetic process via diaminopimelate" /note="histidine transport system permease protein; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="histidine ABC transporter permease" /protein_id="NP_416811.1" /db_xref="GI:16130243" /db_xref="ASAP:ABE-0007615" /db_xref="UniProtKB/Swiss-Prot:P52094" /db_xref="EcoGene:EG12125" /db_xref="GeneID:947235" /translation="MLYGFSGVILQGALVTLELAISSVVLAVIIGLIGAGGKLSQNRL SGLIFEGYTTLIRGVPDLVLMLLIFYGLQIALNTVTEAMGVGQIDIDPMVAGIITLGF IYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPSMMRYALPGIGNNWQV ILKSTALVSLLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTTVSNGVLLFLERR YSVGVKRADL" gene complement(2426006..2426788) /gene="hisJ" /locus_tag="b2309" /gene_synonym="ECK2303; JW2306" /db_xref="EcoGene:EG12124" /db_xref="GeneID:945309" CDS complement(2426006..2426788) /gene="hisJ" /locus_tag="b2309" /gene_synonym="ECK2303; JW2306" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0000105 - histidine biosynthetic process" /note="histidine-binding periplasmic protein of high-affinity histidine transport system; periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="histidine ABC transporter periplasmic binding protein" /protein_id="NP_416812.1" /db_xref="GI:16130244" /db_xref="ASAP:ABE-0007617" /db_xref="UniProtKB/Swiss-Prot:P0AEU0" /db_xref="EcoGene:EG12124" /db_xref="GeneID:945309" /translation="MKKLVLSLSLVLAFSSATAAFAAIPQNIRIGTDPTYAPFESKNS QGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQE IAFTDKLYAADSRLVVAKNSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIV SYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTG MGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGG" gene complement(2427009..2427791) /gene="argT" /locus_tag="b2310" /gene_synonym="ECK2304; JW2307" /db_xref="EcoGene:EG10072" /db_xref="GeneID:949030" CDS complement(2427009..2427791) /gene="argT" /locus_tag="b2310" /gene_synonym="ECK2304; JW2307" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0042597 - periplasmic space" /GO_function="GO:0015597 - histidine/arginine/lysine/ornithine porter activity" /GO_process="GO:0006526 - arginine biosynthetic process; GO:0009089 - lysine biosynthetic process via diaminopimelate" /note="lysine-, arginine-, ornithine-binding periplasmic protein; periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="lysine/arginine/ornithine transporter subunit" /protein_id="NP_416813.1" /db_xref="GI:16130245" /db_xref="ASAP:ABE-0007621" /db_xref="UniProtKB/Swiss-Prot:P09551" /db_xref="EcoGene:EG10072" /db_xref="GeneID:949030" /translation="MKKSILALSLLVGLSTAASSYAALPETVRIGTDTTYAPFSSKDA KGDFVGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQE IAFSDKLYAADSRLIAAKGSPIQPTLDSLKGKHVGVLQGSTQEAYANETWRSKGVDVV AYANQDLVYSDLAAGRLDAALQDEVAASEGFLKQPAGKDFAFAGSSVKDKKYFGDGTG VGLRKDDAELTAAFNKALGELRQDGTYDKMAKKYFDFNVYGD" gene complement(2428057..2428626) /gene="ubiX" /locus_tag="b2311" /gene_synonym="dedF; ECK2305; JW2308" /db_xref="EcoGene:EG11044" /db_xref="GeneID:949033" CDS complement(2428057..2428626) /gene="ubiX" /locus_tag="b2311" /gene_synonym="dedF; ECK2305; JW2308" /EC_number="4.1.1.-" /function="putative enzyme; Not classified" /GO_process="GO:0009060 - aerobic respiration" /codon_start=1 /transl_table=11 /product="3-octaprenyl-4-hydroxybenzoate carboxy-lyase" /protein_id="NP_416814.1" /db_xref="GI:16130246" /db_xref="ASAP:ABE-0007628" /db_xref="UniProtKB/Swiss-Prot:P0AG03" /db_xref="EcoGene:EG11044" /db_xref="GeneID:949033" /translation="MKRLIVGISGASGAIYGVRLLQVLRDVTDIETHLVMSQAARQTL SLETDFSLREVQALADVTHDARDIAASISSGSFQTLGMVILPCSIKTLSGIVHSYTDG LLTRAADVVLKERRPLVLCVRETPLHLGHLRLMTQAAEIGAVIMPPVPAFYHRPQSLD DVINQTVNRVLDQFAITLPEDLFARWQGA" gene complement(2428721..2430238) /gene="purF" /locus_tag="b2312" /gene_synonym="ade; ECK2306; JW2309; purC" /db_xref="EcoGene:EG10794" /db_xref="GeneID:946794" CDS complement(2428721..2430238) /gene="purF" /locus_tag="b2312" /gene_synonym="ade; ECK2306; JW2309; purC" /EC_number="2.4.2.14" /function="enzyme; Purine ribonucleotide biosynthesis" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006164 - purine nucleotide biosynthetic process" /note="amidophosphoribosyltransferase = PRPP amidotransferase" /codon_start=1 /transl_table=11 /product="amidophosphoribosyltransferase" /protein_id="NP_416815.1" /db_xref="GI:16130247" /db_xref="ASAP:ABE-0007631" /db_xref="UniProtKB/Swiss-Prot:P0AG16" /db_xref="EcoGene:EG10794" /db_xref="GeneID:946794" /translation="MCGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFR LRKANGLVSDVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHN GNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAAT NRLIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLG FDFLRDVAPGEAIYITEEGQLFTRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSAR VNMGTKLGEKIAREWEDLDIDVVIPIPETSCDIALEIARILGKPYRQGFVKNRYVGRT FIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVY LASAAPEIRFPNVYGIDMPSATELIAHGREVDEIRQIIGADGLIFQDLNDLIDAVRAE NPDIQQFECSVFNGVYVTKDVDQGYLDFLDTLRNDDAKAVQRQNEVENLEMHNEG" gene complement(2430275..2430763) /gene="cvpA" /locus_tag="b2313" /gene_synonym="dedE; ECK2307; JW2310" /db_xref="EcoGene:EG10169" /db_xref="GeneID:945055" CDS complement(2430275..2430763) /gene="cvpA" /locus_tag="b2313" /gene_synonym="dedE; ECK2307; JW2310" /function="membrane; Colicin-related functions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="colicin V production protein" /protein_id="NP_416816.1" /db_xref="GI:16130248" /db_xref="ASAP:ABE-0007633" /db_xref="UniProtKB/Swiss-Prot:P08550" /db_xref="EcoGene:EG10169" /db_xref="GeneID:945055" /translation="MVWIDYAIIAVIAFSSLVSLIRGFVREALSLVTWGCAFFVASHY YTYLSVWFTGFEDELVRNGIAIAVLFIATLIVGAIVNFVIGQLVEKTGLSGTDRVLGV CFGALRGVLIVAAILFFLDSFTGVSKSEDWSKSQLIPQFSFIIRCFFDYLQSSSSFLP RA" repeat_region 2430929..2431012 /note="REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(2431022..2431684) /gene="dedD" /locus_tag="b2314" /gene_synonym="ECK2308; JW5378" /db_xref="EcoGene:EG10218" /db_xref="GeneID:944971" CDS complement(2431022..2431684) /gene="dedD" /locus_tag="b2314" /gene_synonym="ECK2308; JW5378" /function="putative membrane; Not classified" /note="putative lipoprotein" /codon_start=1 /transl_table=11 /product="membrane-anchored periplasmic protein involved in septation" /protein_id="NP_416817.2" /db_xref="GI:90111417" /db_xref="ASAP:ABE-0007643" /db_xref="UniProtKB/Swiss-Prot:P09549" /db_xref="EcoGene:EG10218" /db_xref="GeneID:944971" /translation="MASKFQNRLVGTIVLVALGVIVLPGLLDGQKKHYQDEFAAIPLV PKAGDRDEPDMMPAATQALPTQPPEGAAEEVRAGDAAAPSLDPATIAANNTEFEPEPA PVAPPKPKPVEPPKPKVEAPPAPKPEPKPVVEEKAAPTGKAYVVQLGALKNADKVNEI VGKLRGAGYRVYTSPSTPVQGKITRILVGPDASKDKLKGSLGELKQLSGLSGVVMGYT PN" gene complement(2431674..2432942) /gene="folC" /locus_tag="b2315" /gene_synonym="dedC; ECK2309; JW2312" /db_xref="EcoGene:EG10327" /db_xref="GeneID:945451" CDS complement(2431674..2432942) /gene="folC" /locus_tag="b2315" /gene_synonym="dedC; ECK2309; JW2312" /EC_number="6.3.2.12" /EC_number="6.3.2.17" /function="enzyme; Biosynthesis of cofactors, carriers: Folic acid" /experiment="N-terminus verified by Edman degradation: PMID 3040739" /GO_process="GO:0046656 - folic acid biosynthetic process" /note="dihydrofolate:folylpolyglutamate synthetase; dihydrofolate synthetase" /codon_start=1 /transl_table=11 /product="bifunctional folylpolyglutamate synthase/ dihydrofolate synthase" /protein_id="NP_416818.1" /db_xref="GI:16130250" /db_xref="ASAP:ABE-0007645" /db_xref="UniProtKB/Swiss-Prot:P08192" /db_xref="EcoGene:EG10327" /db_xref="GeneID:945451" /translation="MIIKRTPQAASPLASWLSYLENLHSKTIDLGLERVSLVAARLGV LKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPE SAHTASFAEIESARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVD ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRSEKPAIVGEPEMPSTIADVAQEKGA LLQRRGVEWNYSVTDHDWAFSDAHGTLENLPLPLVPQPNAATALAALRASGLEVSENA IRDGIASAILPGRFQIVSESPRVIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLH DKDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADA KAEDTVLVCGSFHTVAHVMEVIDARRSGGK" gene complement(2433012..2433926) /gene="accD" /locus_tag="b2316" /gene_synonym="dedB; ECK2310; JW2313; usg" /db_xref="EcoGene:EG10217" /db_xref="GeneID:946796" CDS complement(2433012..2433926) /gene="accD" /locus_tag="b2316" /gene_synonym="dedB; ECK2310; JW2313; usg" /EC_number="6.4.1.2" /function="enzyme; Fatty acid and phosphatidic acid biosynthesis" /GO_component="GO:0005737 - cytoplasm" /note="acetylCoA carboxylase, carboxytransferase component, beta subunit" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase, beta (carboxyltransferase) subunit" /protein_id="NP_416819.1" /db_xref="GI:16130251" /db_xref="ASAP:ABE-0007648" /db_xref="UniProtKB/Swiss-Prot:P0A9Q5" /db_xref="EcoGene:EG10217" /db_xref="GeneID:946796" /translation="MSWIERIKSNITPTRKASIPEGVWTKCDSCGQVLYRAELERNLE VCPKCDHHMRMTARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKET GEKDALVVMKGTLYGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFS ASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNI AEPKALIGFAGPRVIEQTVREKLPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAK LMNLPAPNPEAPREGVVVPPVPDQEPEA" gene complement(2434082..2434741) /gene="dedA" /locus_tag="b2317" /gene_synonym="ECK2311; JW2314" /db_xref="EcoGene:EG10216" /db_xref="GeneID:946798" CDS complement(2434082..2434741) /gene="dedA" /locus_tag="b2317" /gene_synonym="ECK2311; JW2314" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="DedA family inner membrane protein" /protein_id="NP_416820.1" /db_xref="GI:16130252" /db_xref="ASAP:ABE-0007653" /db_xref="UniProtKB/Swiss-Prot:P0ABP6" /db_xref="EcoGene:EG10216" /db_xref="GeneID:946798" /translation="MDLIYFLIDFILHIDVHLAELVAEYGVWVYAILFLILFCETGLV VTPFLPGDSLLFVAGALASLETNDLNVHMMVVLMLIAAIVGDAVNYTIGRLFGEKLFS NPNSKIFRRSYLDKTHQFYEKHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYN VIGALLWVLLFTYAGYFFGTIPMVQDNLKLLIVGIIVVSILPGVIEIIRHKRAAARAA K" gene complement(2434824..2435636) /gene="truA" /locus_tag="b2318" /gene_synonym="asuC; ECK2312; hisT; JW2315; leuK" /db_xref="EcoGene:EG10454" /db_xref="GeneID:946793" CDS complement(2434824..2435636) /gene="truA" /locus_tag="b2318" /gene_synonym="asuC; ECK2312; hisT; JW2315; leuK" /EC_number="4.2.1.70" /function="enzyme; tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine(38-40) synthase" /protein_id="NP_416821.1" /db_xref="GI:16130253" /db_xref="ASAP:ABE-0007657" /db_xref="UniProtKB/Swiss-Prot:P07649" /db_xref="EcoGene:EG10454" /db_xref="GeneID:946793" /translation="MSDQQQPPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALS QVANEPITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKT VPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGEND FTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHN QPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKPPMGPLFLAD" gene complement(2435636..2436649) /gene="usg" /locus_tag="b2319" /gene_synonym="ECK2313; JW2316" /db_xref="EcoGene:EG11059" /db_xref="GeneID:946797" CDS complement(2435636..2436649) /gene="usg" /locus_tag="b2319" /gene_synonym="ECK2313; JW2316" /function="putative transport; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 2681152" /note="putative PTS system enzyme II A component" /codon_start=1 /transl_table=11 /product="putative semialdehyde dehydrogenase" /protein_id="NP_416822.1" /db_xref="GI:16130254" /db_xref="ASAP:ABE-0007660" /db_xref="UniProtKB/Swiss-Prot:P08390" /db_xref="EcoGene:EG11059" /db_xref="GeneID:946797" /translation="MSEGWNIAVLGATGAVGEALLETLAERQFPVGEIYALARNESAG EQLRFGGKTITVQDAAEFDWTQAQLAFFVAGKEATAAWVEEATNSGCLVIDSSGLFAL EPDVPLVVPEVNPFVLTDYRNRNVIAVPDSLTSQLLAALKPLIDQGGLSRISVTSLIS ASAQGKKAVDALAGQSAKLLNGIPIDEEDFFGRQLAFNMLPLLPDSEGSVREERRIVD EVRKILQDEGLMISASVVQAPVFYGHAQMVNFEALRPLAAEEARDAFVQGEDIVLSEE NEFPTQVGDASGTPHLSVGCVRNDYGMPEQVQFWSVADNVRFGGALMAVKIAEKLVQE YLY" gene complement(2436715..2437851) /gene="pdxB" /locus_tag="b2320" /gene_synonym="ECK2314; JW2317" /db_xref="EcoGene:EG10692" /db_xref="GeneID:946785" CDS complement(2436715..2437851) /gene="pdxB" /locus_tag="b2320" /gene_synonym="ECK2314; JW2317" /EC_number="1.1.1.-" /function="enzyme; Biosynthesis of cofactors, carriers: Pyridoxine" /GO_process="GO:0008615 - pyridoxine biosynthetic process" /note="erythronate-4-phosphate dehyrogenase" /codon_start=1 /transl_table=11 /product="erythronate-4-phosphate dehydrogenase" /protein_id="NP_416823.1" /db_xref="GI:16130255" /db_xref="ASAP:ABE-0007663" /db_xref="UniProtKB/Swiss-Prot:P05459" /db_xref="EcoGene:EG10692" /db_xref="GeneID:946785" /translation="MKILVDENMPYARDLFSRLGEVTAVPGRPIPVAQLADADALMVR SVTKVNESLLAGKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSS LLMLAERDGFSLYDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRS LDELVQRADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALL TCLNEGQKLSVVLDVWEGEPELNVELLKKVDIGTSHIAGYTLEGKARGTTQVFEAYSK FIGHEQHVALDTLLPAPEFGRITLHGPLDQPTLKRLVHLVYDVRRDDAPLRKVAGIPG EFDKLRKNYLERREWSSLYVICDDASAASLLCKLGFNAVHHPAR" gene 2437950..2438945 /gene="flk" /locus_tag="b2321" /gene_synonym="div; ECK2315; JW2318; rflH" /db_xref="EcoGene:EG10229" /db_xref="GeneID:946776" CDS 2437950..2438945 /gene="flk" /locus_tag="b2321" /gene_synonym="div; ECK2315; JW2318; rflH" /function="putative factor; Surface structures" /note="flagellar assembly protein" /codon_start=1 /transl_table=11 /product="putative flagella assembly protein" /protein_id="NP_416824.1" /db_xref="GI:16130256" /db_xref="ASAP:ABE-0007667" /db_xref="UniProtKB/Swiss-Prot:P15286" /db_xref="EcoGene:EG10229" /db_xref="GeneID:946776" /translation="MIQPISGPPPGQPPGQGDNLPSGTGNQPLSSQQRTSLESLMTKV TSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQ LGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREAT DRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWL QARQTLSQQNTPTLESLQMTLKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDIL NQLYQRRVKGIDPRVMQPLLNPFPPMMDTLQNMATRPALWILLVAIILMLVWLVR" gene complement(2438942..2440120) /gene="yfcJ" /locus_tag="b2322" /gene_synonym="ECK2316; JW2319" /db_xref="EcoGene:EG14113" /db_xref="GeneID:946791" CDS complement(2438942..2440120) /gene="yfcJ" /locus_tag="b2322" /gene_synonym="ECK2316; JW2319" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative arabinose efflux transporter" /protein_id="NP_416825.1" /db_xref="GI:16130257" /db_xref="ASAP:ABE-0007669" /db_xref="UniProtKB/Swiss-Prot:P77549" /db_xref="EcoGene:EG14113" /db_xref="GeneID:946791" /translation="MTAVSQTETRSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHH ELGYGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGGALLLAA ILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGIVGPKHSGKVMSWNGMAIYGA LAVGAPLGLLIHSHYGFAALAITTMVLPVLAWACNGTVRKVPALAGERPSLWSVVGLI WKPGLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVVMRVMFGWMPDRF GGVKVAIVSLLVETVGLLLLWQAPGAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQ VRGTALGGYAAFQDIALGVSGPLAGMLATTFGYSSVFLAGAISAVLGIIVTILSFRRG " repeat_region 2440343..2440378 /note="REP170 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2440385..2441605) /gene="fabB" /locus_tag="b2323" /gene_synonym="ECK2317; fabC; JW2320" /db_xref="EcoGene:EG10274" /db_xref="GeneID:946799" CDS complement(2440385..2441605) /gene="fabB" /locus_tag="b2323" /gene_synonym="ECK2317; fabC; JW2320" /EC_number="2.3.1.41" /function="enzyme; Fatty acid and phosphatidic acid biosynthesis" /experiment="N-terminus verified by Edman degradation: PMID 3076376" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="3-oxoacyl-[acyl-carrier-protein] synthase I" /protein_id="NP_416826.1" /db_xref="GI:16130258" /db_xref="ASAP:ABE-0007675" /db_xref="UniProtKB/Swiss-Prot:P0A953" /db_xref="EcoGene:EG10274" /db_xref="GeneID:946799" /translation="MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGM RSHVWGNVKLDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLI AGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSIS SACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKA SRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG AVRCMKMAMHGVDTPIDYLNSHGTSTPVGDVKELAAIREVFGDKSPAISATKAMTGHS LGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGF GGTNATLVMRKLKD" gene 2441764..2443770 /gene="mnmC" /locus_tag="b2324" /gene_synonym="ECK2318; JW5380; trmC; yfcK" /db_xref="EcoGene:EG14114" /db_xref="GeneID:946800" CDS 2441764..2443770 /gene="mnmC" /locus_tag="b2324" /gene_synonym="ECK2318; JW5380; trmC; yfcK" /function="enzyme; tRNA modification" /note="putative peptidase" /codon_start=1 /transl_table=11 /product="fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme" /protein_id="NP_416827.4" /db_xref="GI:90111418" /db_xref="ASAP:ABE-0007681" /db_xref="UniProtKB/Swiss-Prot:P77182" /db_xref="EcoGene:EG14114" /db_xref="GeneID:946800" /translation="MKHYSIQPANLEFNAEGTPVSRDFDDVYFSNDNGLEETRYVFLG GNQLEVRFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK FPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINEL TSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAGFVRR GLQDAGFTMQKRKGFGRKREMLCGVMEQTLPLPCSAPWFNRTGSSKREAAIIGGGIAS ALLSLALLRRGWQVTLYCADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFAR RFYDQLPVKFDHDWCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEANAVEQITGVA TNCSGITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNLSRKDDCWLLNFAGDQ QATHSVVVLANGHQISRFSQTSTLPVYSVAGQVSHIPTTPELAELKQVLCYDGYLTPQ NPANQHHCIGASYHRGSEDTAYSEDDQQQNRQRLIDCFPQAQWAKEVDVSDKEARCGV RCATRDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPVFDDLFMFAALGSRGLCSAP LCAEILAAQMSDEPIPMDASTLAALNPNRLWVRKLLKGKAVKAG" repeat_region 2443789..2443868 /note="REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(2443891..2444169) /gene="yfcL" /locus_tag="b2325" /gene_synonym="ECK2319; JW2322" /db_xref="EcoGene:EG14115" /db_xref="GeneID:946804" CDS complement(2443891..2444169) /gene="yfcL" /locus_tag="b2325" /gene_synonym="ECK2319; JW2322" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416828.1" /db_xref="GI:16130260" /db_xref="ASAP:ABE-0007684" /db_xref="UniProtKB/Swiss-Prot:P64540" /db_xref="EcoGene:EG14115" /db_xref="GeneID:946804" /translation="MIAEFESRILALIDGMVDHASDDELFASGYLRGHLTLAIAELES GDDHSAQAVHTTVSQSLEKAIGAGELSPRDQALVTDMWENLFQQASQQ" gene complement(2444203..2444751) /gene="epmC" /locus_tag="b2326" /gene_synonym="ECK2320; JW5381; yfcM" /db_xref="EcoGene:EG14116" /db_xref="GeneID:946807" CDS complement(2444203..2444751) /gene="epmC" /locus_tag="b2326" /gene_synonym="ECK2320; JW5381; yfcM" /function="enzyme; Protein modification" /note="putative transporting ATPase" /codon_start=1 /transl_table=11 /product="Elongation Factor P Lys34 hydroxylase" /protein_id="NP_416829.1" /db_xref="GI:16130261" /db_xref="ASAP:ABE-0007686" /db_xref="UniProtKB/Swiss-Prot:P76938" /db_xref="EcoGene:EG14116" /db_xref="GeneID:946807" /translation="MNSTHHYEQLIEIFNSCFADDFNTRLIKGDDEPIYLPADAEVPY NRIVFAHGFYASAIHEISHWCIAGKARRELVDFGYWYCPDGRDAQTQSQFEDVEVKPQ ALDWLFCVAAGYPFNVSCDNLEGDFEPDRVVFQRRVHAQVMDYLTNGIPERPARFIKA LQNYYHTPELTAEQFPWPEALN" gene complement(2444751..2445560) /gene="yfcA" /locus_tag="b2327" /gene_synonym="ECK2321; JW2324" /db_xref="EcoGene:EG11144" /db_xref="GeneID:946808" CDS complement(2444751..2445560) /gene="yfcA" /locus_tag="b2327" /gene_synonym="ECK2321; JW2324" /function="putative structure; Not classified" /note="putative structural protein" /codon_start=1 /transl_table=11 /product="TauE/TSUP family inner membrane protein" /protein_id="NP_416830.1" /db_xref="GI:16130262" /db_xref="ASAP:ABE-0007689" /db_xref="UniProtKB/Swiss-Prot:P0AD30" /db_xref="EcoGene:EG11144" /db_xref="GeneID:946808" /translation="METFNSLFMVSPLLLGVLFFVAMLAGFIDSIAGGGGLLTIPALM AAGMSPANALATNKLQACGGSISATIYFIRRKVVSLSDQKLNIAMTFVGSMSGALLVQ YVQADVLRQILPILVICIGLYFLLMPKLGEEDRQRRMYGLPFALIAGGCVGFYDGFFG PAAGSFYALAFVTLCGFNLAKATAHAKLLNATSNIGGLLLFILGGKVIWATGFVMLVG QFLGARMGSRLVLSKGQKLIRPMIVIVSAVMSAKLLYDSHGQEILHWLGMN" gene complement(2445560..2446384) /gene="mepA" /locus_tag="b2328" /gene_synonym="ECK2322; JW2325" /db_xref="EcoGene:EG10580" /db_xref="GeneID:946812" CDS complement(2445560..2446384) /gene="mepA" /locus_tag="b2328" /gene_synonym="ECK2322; JW2325" /EC_number="3.4.24.-" /function="enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process; GO:0042493 - response to drug" /note="murein DD-endopeptidase, penicillin-insensitive" /codon_start=1 /transl_table=11 /product="murein DD-endopeptidase" /protein_id="NP_416831.1" /db_xref="GI:16130263" /db_xref="ASAP:ABE-0007691" /db_xref="UniProtKB/Swiss-Prot:P0C0T5" /db_xref="EcoGene:EG10580" /db_xref="GeneID:946812" /translation="MNKTAIALLALLASSASLAATPWQKITQPVPGSAQSIGSFSNGC IVGADTLPIQSEHYQVMRTDQRRYFGHPDLVMFIQRLSSQVSNLGMGTVLIGDMGMPA GGRFNGGHASHQTGLDVDIFLQLPKTRWTSAQLLRPQALDLVSRDGKHVVSTLWKPEI FSLIKLAAQDKDVTRIFVNPAIKQQLCLDAGTDRDWLRKVRPWFQHRAHMHVRLRCPA DSLECEDQPLPPSGDGCGAELQSWFEPPKPGTTKPEKKTPPPLPPSCQALLDEHVI" gene complement(2446388..2447473) /gene="aroC" /locus_tag="b2329" /gene_synonym="ECK2323; JW2326" /db_xref="EcoGene:EG10075" /db_xref="GeneID:946814" CDS complement(2446388..2447473) /gene="aroC" /locus_tag="b2329" /gene_synonym="ECK2323; JW2326" /EC_number="4.2.3.5" /function="enzyme; Amino acid biosynthesis: Chorismate" /GO_process="GO:0009423 - chorismate biosynthetic process" /codon_start=1 /transl_table=11 /product="chorismate synthase" /protein_id="NP_416832.1" /db_xref="GI:16130264" /db_xref="ASAP:ABE-0007693" /db_xref="UniProtKB/Swiss-Prot:P12008" /db_xref="EcoGene:EG10075" /db_xref="GeneID:946814" /translation="MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHD LDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVF RPGHADYTYEQKYGLRDYRGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQM GDIPLDIKDWSQVEQNPFFCPDPDKIDALDELMRALKKEGDSIGAKVTVVASGVPAGL GEPVFDRLDADIAHALMSINAVKGVEIGDGFDVVALRGSQNRDEITKDGFQSNHAGGI LGGISSGQQIIAHMALKPTSSITVPGRTINRFGEEVEMITKGRHDPCVGIRAVPIAEA MLAIVLMDHLLRQRAQNADVKTDIPRW" gene complement(2447508..2448440) /gene="prmB" /locus_tag="b2330" /gene_synonym="ECK2324; JW5841; yfcB" /db_xref="EcoGene:EG12449" /db_xref="GeneID:946805" CDS complement(2447508..2448440) /gene="prmB" /locus_tag="b2330" /gene_synonym="ECK2324; JW5841; yfcB" /EC_number="2.1.1.-" /function="putative enzyme; Not classified" /note="putative adenine-specific methylase" /codon_start=1 /transl_table=11 /product="N5-glutamine methyltransferase" /protein_id="NP_416833.4" /db_xref="GI:90111419" /db_xref="ASAP:ABE-0007695" /db_xref="UniProtKB/Swiss-Prot:P39199" /db_xref="EcoGene:EG12449" /db_xref="GeneID:946805" /translation="MDKIFVDEAVNELQTIQDMLRWSVSRFSAANIWYGHGTDNPWDE AVQLVLPSLYLPLDIPEDMRTARLTSSEKHRIVERVIRRVNERIPVAYLTNKAWFCGH EFYVDERVLVPRSPIGELINNKFAGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVD AVDISPDALAVAEQNIEEHGLIHNVIPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSD LPNEYRHEPELGLASGTDGLKLTRRILGNAADYLADDGVLICEVGNSMVHLMEQYPDV PFTWLEFDNGGDGVFMLTKEQLIAAREHFAIYKD" gene 2448606..2449157 /gene="smrB" /locus_tag="b2331" /gene_synonym="ECK2325; JW2328; yfcN" /db_xref="EcoGene:EG14117" /db_xref="GeneID:944847" CDS 2448606..2449157 /gene="smrB" /locus_tag="b2331" /gene_synonym="ECK2325; JW2328; yfcN" /codon_start=1 /transl_table=11 /product="putative DNA endonuclease" /protein_id="NP_416834.1" /db_xref="GI:16130266" /db_xref="ASAP:ABE-0007698" /db_xref="UniProtKB/Swiss-Prot:P0A8B2" /db_xref="EcoGene:EG14117" /db_xref="GeneID:944847" /translation="MKKKTTLSEEDQALFRQLMAGTRKIKQDTIVHRPQRKKISEVPV KRLIQEQADASHYFSDEFQPLLNTEGPVKYVRPDVSHFEAKKLRRGDYSPELFLDLHG LTQLQAKQELGALIAACRREHVFCACVMHGHGKHILKQQTPLWLAQHPHVMAFHQAPK EYGGDAALLVLIEVEEWLPPELP" gene complement(2449228..2450049) /gene="yfcO" /locus_tag="b2332" /gene_synonym="ECK2326; JW2329" /db_xref="EcoGene:EG14118" /db_xref="GeneID:946620" CDS complement(2449228..2450049) /gene="yfcO" /locus_tag="b2332" /gene_synonym="ECK2326; JW2329" /codon_start=1 /transl_table=11 /product="DUF2544 family putative outer membrane protein" /protein_id="NP_416835.2" /db_xref="GI:90111420" /db_xref="ASAP:ABE-0007700" /db_xref="UniProtKB/Swiss-Prot:P76498" /db_xref="EcoGene:EG14118" /db_xref="GeneID:946620" /translation="MKILRWLFALVMLIATTEAMAAGHSVDVYYGYNGDSRNIATFNL KIMMPSAVYVGEYKSSQWLMTGEILQNVSWSGPPPAPSVKLIGYHQNINKASCPGLPS GWNCGYYTFEVIVSAEIESYFSCPWLVIMNDSEASPGGVTYQGPDSHDTICPSVSVQP YDVSWNENYVSKSKLLTLQSTGGVVEKTLSTYLMKDGKLCDSTQMNETGGYCRWVAQM ITFTASGCDKAEVSVTPNRHPITDKQLHDMVVRVDTSSMQPIDSTCRFQYILNEL" gene complement(2450051..2450590) /gene="yfcP" /locus_tag="b2333" /gene_synonym="ECK2327; JW2330" /db_xref="EcoGene:EG14119" /db_xref="GeneID:946788" CDS complement(2450051..2450590) /gene="yfcP" /locus_tag="b2333" /gene_synonym="ECK2327; JW2330" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="putative fimbrial-like protein" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_416836.1" /db_xref="GI:16130268" /db_xref="ASAP:ABE-0007702" /db_xref="UniProtKB/Swiss-Prot:P76499" /db_xref="EcoGene:EG14119" /db_xref="GeneID:946788" /translation="MNKSMIQSGGYVLLAGLILAMSSTLFAADNNLHFSGNLLSKSCA LVVDGQYLAEVRFPTVSRQDLNVAGQSARVPVVFKLKDCKGPAGYNVKVTLTGVEDSE QPGFLALDTSSTAQGVGIGMEKTDGMQVAINNTNGATFALTNGNNDINFRAWLQAKSG RDVTIGEFTASLTATFEYI" gene complement(2450587..2451075) /gene="yfcQ" /locus_tag="b2334" /gene_synonym="ECK2328; JW2331" /db_xref="EcoGene:EG14120" /db_xref="GeneID:946779" CDS complement(2450587..2451075) /gene="yfcQ" /locus_tag="b2334" /gene_synonym="ECK2328; JW2331" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_416837.1" /db_xref="GI:16130269" /db_xref="ASAP:ABE-0007705" /db_xref="UniProtKB/Swiss-Prot:P76500" /db_xref="EcoGene:EG14120" /db_xref="GeneID:946779" /translation="MRKTFLTLLCVSSAIAHAADEDITFHGTLLSPPTCSISGGKTIE VEFRDLIIDDINGNYGRKEVPYELTCDSTTRHPDWEMTLTWTGTQTSFNDAAIETDVP GFGIELQHDGQRFKLNTPLAINATDFTQKPKLEAVPVKASDAVLSDTNFSAYATLRVD YQ" gene complement(2451072..2451584) /gene="yfcR" /locus_tag="b2335" /gene_synonym="ECK2329; JW2332" /db_xref="EcoGene:EG14121" /db_xref="GeneID:946818" CDS complement(2451072..2451584) /gene="yfcR" /locus_tag="b2335" /gene_synonym="ECK2329; JW2332" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="putative fimbrial protein" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_416838.1" /db_xref="GI:16130270" /db_xref="ASAP:ABE-0007707" /db_xref="UniProtKB/Swiss-Prot:P76501" /db_xref="EcoGene:EG14121" /db_xref="GeneID:946818" /translation="MTGGVMSQKFVVGAGLLVCSVCSLSAMAGSKPVDLILRVLVDAP PPCSIKGSQVEFGNMIADNVDGTNYRQDAKYTLNCTNSLANDLRMQLKGNTSTINGET VLSTNITGLGIRIENSADNSLFAVGENSWTPFNINNQPQLKAVPVKASGAQLAAGEFN ASLTMVVDYQ" gene complement(2451584..2452336) /gene="yfcS" /locus_tag="b2336" /gene_synonym="ECK2330; JW2333" /db_xref="EcoGene:EG14122" /db_xref="GeneID:946418" CDS complement(2451584..2452336) /gene="yfcS" /locus_tag="b2336" /gene_synonym="ECK2330; JW2333" /function="putative factor; Surface structures" /GO_process="GO:0006457 - protein folding" /note="putative chaperone" /codon_start=1 /transl_table=11 /product="putative periplasmic pilin chaperone" /protein_id="NP_416839.1" /db_xref="GI:16130271" /db_xref="ASAP:ABE-0007709" /db_xref="UniProtKB/Swiss-Prot:P77599" /db_xref="EcoGene:EG14122" /db_xref="GeneID:946418" /translation="MSDLLCSAKLGAMTLALLLSATSLSALASVTPDRTRLIFNESDK SISVTLRNNDPKLPYLAQSWIEDEKGNKITSPLTVLPPVQRIDSMMNGQVKVQGMPDI NKLPADRESMFYFNVREIPPKSNKPNTLQIALQTRIKLFWRPKALEKVSMKSPWQHKV TLTRSGQAFTVNNPTPYYVIISNASAQKNGNPAAGFSPLVIEPKTTVPLNVKMDSVPV LTYVNDFGARMPLFFQCNGNSCQVDEEQSRKG" gene complement(2452356..2455001) /gene="yfcU" /locus_tag="b4661" /gene_synonym="ECK2332; JW2334; yfcT" /pseudo /db_xref="EcoGene:EG14124" /db_xref="GeneID:1450268" CDS complement(2452356..2455001) /gene="yfcU" /locus_tag="b4661" /gene_synonym="ECK2332; JW2334; yfcT" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="pseudogene, FimD fimbrial export usher family;putative membrane; Not classified; putative outer membrane protein" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0007711" /db_xref="ASAP:ABE-0007713" /db_xref="UniProtKB/Swiss-Prot:P77196" /db_xref="EcoGene:EG14124" /db_xref="GeneID:1450268" gene complement(2455083..2455646) /gene="yfcV" /locus_tag="b2339" /gene_synonym="ECK2333; JW2336" /db_xref="EcoGene:EG14125" /db_xref="GeneID:949109" CDS complement(2455083..2455646) /gene="yfcV" /locus_tag="b2339" /gene_synonym="ECK2333; JW2336" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="putative fimbrial-like protein" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_416841.1" /db_xref="GI:16130272" /db_xref="ASAP:ABE-0007715" /db_xref="UniProtKB/Swiss-Prot:P77288" /db_xref="EcoGene:EG14125" /db_xref="GeneID:949109" /translation="MSKFVKTAIAAAMVMGAFTSTATIAAGNNGTARFYGTIEDSVCS IVPDDHKLEVDMGDIGAEKLKNNGTTTPKNFQIRLQDCVFDTQETMTTTFTGTVSSAN SGNYYTIFNTDTGAAFNNVSLAIGDSLGTSYKSGMGIDQKIVKDTATNKGKAKQTLNF KAWLVGAADAPDLGNFEANTTFQITYL" gene complement(2456327..2456812) /gene="sixA" /locus_tag="b2340" /gene_synonym="ECK2334; JW2337; yfcW" /db_xref="EcoGene:EG14126" /db_xref="GeneID:946815" CDS complement(2456327..2456812) /gene="sixA" /locus_tag="b2340" /gene_synonym="ECK2334; JW2337; yfcW" /EC_number="3.1.3.-" /GO_process="GO:0006464 - protein modification process" /codon_start=1 /transl_table=11 /product="phosphohistidine phosphatase" /protein_id="NP_416842.1" /db_xref="GI:16130273" /db_xref="ASAP:ABE-0007720" /db_xref="UniProtKB/Swiss-Prot:P76502" /db_xref="EcoGene:EG14126" /db_xref="GeneID:946815" /translation="MQVFIMRHGDAALDAASDSVRPLTTNGCDESRLMANWLKGQKVE IERVLVSPFLRAEQTLEEVGDCLNLPSSAEVLPELTPCGDVGLVSAYLQALTNEGVAS VLVISHLPLVGYLVAELCPGETPPMFTTSAIASVTLDESGNGTFNWQMSPCNLKMAKA I" gene complement(2457015..2459159) /gene="fadJ" /locus_tag="b2341" /gene_synonym="ECK2335; JW2338; yfcX" /db_xref="EcoGene:EG14127" /db_xref="GeneID:949097" CDS complement(2457015..2459159) /gene="fadJ" /locus_tag="b2341" /gene_synonym="ECK2335; JW2338; yfcX" /EC_number="1.1.1.35" /EC_number="4.2.1.17" /EC_number="5.1.2.3" /EC_number="5.3.3.8" /function="putative enzyme; Not classified" /GO_process="GO:0019395 - fatty acid oxidation" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="enoyl-CoA hydratase/epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase" /protein_id="NP_416843.1" /db_xref="GI:16130274" /db_xref="ASAP:ABE-0007723" /db_xref="UniProtKB/Swiss-Prot:P77399" /db_xref="EcoGene:EG14127" /db_xref="GeneID:949097" /translation="MEMTSAFTLNVRLDNIAVITIDVPGEKMNTLKAEFASQVRAIIK QLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPI QVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIG VSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEAAVELAKKERPSSRPLPVRERI LAGPLGRALLFKMVGKKTEHKTQGNYPATERILEVVETGLAQGTSSGYDAEARAFGEL AMTPQSQALRSIFFASTDVKKDPGSDAPPAPLNSVGILGGGLMGGGIAYVTACKAGIP VRIKDINPQGINHALKYSWDQLEGKVRRRHLKASERDKQLALISGTTDYRGFAHRDLI IEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVIGLHFFSP VEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIR MLTQGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGERFSAPANVV SSILNDDRKGRKNGRGFYLYGQKGRKSKKQVDPAIYPLIGTQGQGRISAPQVAERCVM LMLNEAVRCVDEQVIRSVRDGDIGAVFGIGFPPFLGGPFRYIDSLGAGEVVAIMQRLA TQYGSRFTPCERLVEMGARGESFWKTTATDLQ" gene complement(2459159..2460469) /gene="fadI" /locus_tag="b2342" /gene_synonym="ECK2336; JW2339; yfcY" /db_xref="EcoGene:EG14128" /db_xref="GeneID:948823" CDS complement(2459159..2460469) /gene="fadI" /locus_tag="b2342" /gene_synonym="ECK2336; JW2339; yfcY" /EC_number="2.3.1.16" /function="putative enzyme; Not classified" /note="putative acyltransferase" /codon_start=1 /transl_table=11 /product="beta-ketoacyl-CoA thiolase, anaerobic, subunit" /protein_id="NP_416844.1" /db_xref="GI:16130275" /db_xref="ASAP:ABE-0007725" /db_xref="UniProtKB/Swiss-Prot:P76503" /db_xref="EcoGene:EG14128" /db_xref="GeneID:948823" /translation="MGQVLPLVTRQGDRIAIVSGLRTPFARQATAFHGIPAVDLGKMV VGELLARSEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATS FQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLF SRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWS DGKLKEEVMTAFIPPYKQPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANSTPLT DGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTM SDLTLIDMHEAFAAQTLANIQLLGSERFAREALGRAHATGEVDDSKFNVLGGSIAYGH PFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLEAE" gene complement(2460650..2460934) /gene="yfcZ" /locus_tag="b2343" /gene_synonym="ECK2337; JW2340" /db_xref="EcoGene:EG14129" /db_xref="GeneID:948817" CDS complement(2460650..2460934) /gene="yfcZ" /locus_tag="b2343" /gene_synonym="ECK2337; JW2340" /codon_start=1 /transl_table=11 /product="UPF0381 family protein" /protein_id="NP_416845.2" /db_xref="GI:90111421" /db_xref="ASAP:ABE-0007731" /db_xref="UniProtKB/Swiss-Prot:P0AD33" /db_xref="EcoGene:EG14129" /db_xref="GeneID:948817" /translation="MSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTL AALTEKARSVESEPCKITPTFTEESDGVRLDIDFTFACEAEMLIFQLGLR" gene 2461306..2462646 /gene="fadL" /locus_tag="b2344" /gene_synonym="ECK2338; JW2341; ttr" /db_xref="EcoGene:EG10280" /db_xref="GeneID:946820" CDS 2461306..2462646 /gene="fadL" /locus_tag="b2344" /gene_synonym="ECK2338; JW2341; ttr" /function="enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0019395 - fatty acid oxidation" /note="long-chain fatty acid transport protein (outer membrane flp protein)" /codon_start=1 /transl_table=11 /product="long-chain fatty acid outer membrane transporter" /protein_id="NP_416846.2" /db_xref="GI:145698292" /db_xref="ASAP:ABE-0007740" /db_xref="UniProtKB/Swiss-Prot:P10384" /db_xref="EcoGene:EG10280" /db_xref="GeneID:946820" /translation="MSQKTLFTKSALAVAVALISTQAWSAGFQLNEFSSSGLGRAYSG EGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTA WVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYR LNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTQQGQALAATANGIDS NTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYG LPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATST SGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRF WLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF" gene 2463012..2464070 /gene="yfdF" /locus_tag="b2345" /gene_synonym="ECK2339; JW2342" /db_xref="EcoGene:EG14130" /db_xref="GeneID:946819" CDS 2463012..2464070 /gene="yfdF" /locus_tag="b2345" /gene_synonym="ECK2339; JW2342" /GO_process="GO:0006259 - DNA metabolic process" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416847.1" /db_xref="GI:16130278" /db_xref="ASAP:ABE-0007743" /db_xref="UniProtKB/Swiss-Prot:P76505" /db_xref="EcoGene:EG14130" /db_xref="GeneID:946819" /translation="MLPSISINNTSAAYPESINENNNDEVNGLVQEFKNLFNGKEGIS TCIKHLLELIKNAIRVNDDPYRFNINNSSVTYIDIDSNDTDHITIGIDNQEPIELPAN YKDKELVRTIINDNIVEKTHDINNKEMIFSALKEIYDGDPGFIFDKISHKLRHTVTEF DESGKSEPTDLFTWYGKDKKGDSLAIVIKNKNGNDYLSLGYYDQDDYHIQRGIRINGD SLTQYCSENARSASAWFESSKAIMAESFATGSDHQVVNELNGERLREPNDVFKRYGRA IRYDFQVDDAKYKCDHLKEIVSTLVGNKINVGHSQKIYKHFKDLEGKIEERLQNRQAE YQNEINQPSAPGVNFDDI" gene complement(2464252..2465007) /gene="mlaA" /locus_tag="b2346" /gene_synonym="ECK2340; JW2343; vacJ" /db_xref="EcoGene:EG14276" /db_xref="GeneID:945582" CDS complement(2464252..2465007) /gene="mlaA" /locus_tag="b2346" /gene_synonym="ECK2340; JW2343; vacJ" /function="transport; Transport of small molecules: phospholipids; Macromolecule synthesis, modification: Lipoprotein" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="lipoprotein precursor" /codon_start=1 /transl_table=11 /product="ABC transporter maintaining OM lipid asymmetry, OM lipoprotein component" /protein_id="NP_416848.1" /db_xref="GI:16130279" /db_xref="ASAP:ABE-0007745" /db_xref="UniProtKB/Swiss-Prot:P76506" /db_xref="EcoGene:EG14276" /db_xref="GeneID:945582" /translation="MKLRLSALALGTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNF NVLDPYIVRPVAVAWRDYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTR FFLNTILGMGGFIDVAGMANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRD DGGDMADGFYPVLSWLTWPMSVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYF QRHDFIANGGELKPQENPNAQAIQDDLKDIDSE" gene 2465301..2466233 /gene="yfdC" /locus_tag="b2347" /gene_synonym="ECK2341; JW2344" /db_xref="EcoGene:EG12420" /db_xref="GeneID:944801" CDS 2465301..2466233 /gene="yfdC" /locus_tag="b2347" /gene_synonym="ECK2341; JW2344" /function="putative transport; Not classified" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_416849.1" /db_xref="GI:16130280" /db_xref="ASAP:ABE-0007751" /db_xref="UniProtKB/Swiss-Prot:P37327" /db_xref="EcoGene:EG12420" /db_xref="GeneID:944801" /translation="MDNDKIDQHSDEIEVESEEKERGKKIEIDEDRLPSRAMAIHEHI RQDGEKELERDAMALLWSAIAAGLSMGASLLAKGIFQVELEGVPGSFLLENLGYTFGF IIVIMARQQLFTENTVTAVLPVMQKPTMSNVGLLIRLWGVVLLGNILGTGIAAWAFEY MPIFNEETRDAFVKIGMDVMKNTPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIIL MTWLIALGDTTHIVVGSVEILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMS HAQIRNDMSNKRKAEARQKAERAENIKKNYKNPA" gene 2466309..2466383 /gene="argW" /locus_tag="b2348" /gene_synonym="ECK2342; JWR0044" /db_xref="EcoGene:EG30016" /db_xref="GeneID:945486" tRNA 2466309..2466383 /gene="argW" /locus_tag="b2348" /gene_synonym="ECK2342; JWR0044" /product="tRNA-Arg" /note="anticodon: CCU" /db_xref="ASAP:ABE-0007753" /db_xref="EcoGene:EG30016" /db_xref="GeneID:945486" misc_feature 2466385..2476599 /note="cryptic prophage CPS-53" gene 2466545..2467702 /gene="intS" /locus_tag="b2349" /gene_synonym="ECK2343; intC; JW2345; yfdB" /db_xref="EcoGene:EG12413" /db_xref="GeneID:946821" CDS 2466545..2467702 /gene="intS" /locus_tag="b2349" /gene_synonym="ECK2343; intC; JW2345; yfdB" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CPS-53 (KpLE1) prophage; putative prophage CPS-53 integrase" /protein_id="NP_416850.1" /db_xref="GI:16130281" /db_xref="ASAP:ABE-0007756" /db_xref="UniProtKB/Swiss-Prot:P37326" /db_xref="EcoGene:EG12413" /db_xref="GeneID:946821" /translation="MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKID GKEKILTVGKYPLMTLQEARDKAWTARKDISVGIDPVKAKKASSNNNSFSAIYKEWYE HKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAMERANKA RRRCGEVFRYAIVTGRAKYNPAPDLADAMKGYRKKNFPFLPADQIPAFNKALATFSGS IVSLIATKVLRYTALRTKELRSMLWKNVDFENRIITIDASVMKGRKIHVVPMSDQVVE LLTTLSSITKPVSEFVFAGRNDKKKPICENAVLLVIKQIGYEGLESGHGFRHEFSTIM NEHEWPADAIEVQLAHANGGSVRGIYNHAQYLDKRREMMQWWADWLDEKVE" gene 2467855..2468217 /gene="gtrA" /locus_tag="b2350" /gene_synonym="ECK2344; JW2346; yfdG" /db_xref="EcoGene:EG14131" /db_xref="GeneID:948821" CDS 2467855..2468217 /gene="gtrA" /locus_tag="b2350" /gene_synonym="ECK2344; JW2346; yfdG" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CPS-53 (KpLE1) prophage; bactoprenol-linked glucose translocase/flippase" /protein_id="NP_416851.1" /db_xref="GI:16130282" /db_xref="ASAP:ABE-0007761" /db_xref="UniProtKB/Swiss-Prot:P77682" /db_xref="EcoGene:EG14131" /db_xref="GeneID:948821" /translation="MLKLFAKYTSIGVLNTLIHWVVFGVCIYVAHTNQALANFAGFVV AVSFSFFANAKFTFKASTTTMRYMLYVGFMGTLSATVGWAADRCALPPMITLVTFSAI SLVCGFVYSKFIVFRDAK" gene 2468214..2469134 /gene="gtrB" /locus_tag="b2351" /gene_synonym="ECK2345; JW2347; yfdH" /db_xref="EcoGene:EG14132" /db_xref="GeneID:949098" CDS 2468214..2469134 /gene="gtrB" /locus_tag="b2351" /gene_synonym="ECK2345; JW2347; yfdH" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CPS-53 (KpLE1) prophage; bactoprenol glucosyl transferase" /protein_id="NP_416852.1" /db_xref="GI:16130283" /db_xref="ASAP:ABE-0007763" /db_xref="UniProtKB/Swiss-Prot:P77293" /db_xref="EcoGene:EG14132" /db_xref="GeneID:949098" /translation="MKISLVVPVFNEEEAIPIFYKTVREFEELKSYEVEIVFINDGSK DATESIINALAVSDPLVVPLSFTRNFGKEPALFAGLDHATGDAIIPIDVDLQDPIEVI PHLIEKWQAGADMVLAKRSDRSTDGRLKRKTAEWFYKLHNKISNPKIEENVGDFRLMS RDVVENIKLMPERNLFMKGILSWVGGKTDIVEYVRAERIAGDTKFNGWKLWNLALEGI TSFSTFPLRIWTYIGLVVASVAFIYGAWMILDTIIFGNAVRGYPSLLVSILFLGGIQM IGIGVLGEYIGRTYIETKKRPKYIIKRVKK" gene 2469131..2470462 /gene="gtrS" /locus_tag="b2352" /gene_synonym="ECK2346; gtrIV; JW5382; yfdI" /db_xref="EcoGene:EG14133" /db_xref="GeneID:946822" CDS 2469131..2470462 /gene="gtrS" /locus_tag="b2352" /gene_synonym="ECK2346; gtrIV; JW5382; yfdI" /function="Phage or Prophage Related" /note="putative ligase" /codon_start=1 /transl_table=11 /product="serotype-specific glucosyl transferase, CPS-53 (KpLE1) prophage" /protein_id="NP_416853.1" /db_xref="GI:16130284" /db_xref="ASAP:ABE-0007765" /db_xref="UniProtKB/Swiss-Prot:P76507" /db_xref="EcoGene:EG14133" /db_xref="GeneID:946822" /translation="MNKAIKVSLYISFVLIICALSKNIMMLNTSDFGRAIKPLIEDIP AFTYDLPLLYKLKGHIDSIDSYEYISSYSYILYTYVLFISIFTEYLDARVLSLFLKVI YIYSLYAIFTSYIKTERYVTLFTFFILAFLMCSSSTLSMFASFYQEQIVIIFLPFLVY SLTCKNNKSMLLLFFSLLIISTAKNQFILTPLIVYSYYIFFDRHKLIIKSVICVVCLL ASIFAISYSKGVVELNKYHATYFGSYLYMKNNGYKMPSYVDDKCVGLDAWGNKFDISF GATPTEVGTECFESHKDETFSNALFLLVSKPSTIFKLPFDDGVMSQYKENYFHVYKKL HVIYGESNILTTITNIKDNIFKNIRFISLLLFFIASIFIRNNKIKASLFVVSLFGISQ FYVSFFGEGYRDLSKHLFGMYFSFDLCLYITVVFLIYKIIQRNQDNSDVKH" gene 2470815..2471105 /gene="tfaS" /locus_tag="b2353" /gene_synonym="ECK2347; JW5383; yfdJ" /pseudo /db_xref="EcoGene:EG14134" /db_xref="GeneID:946825" CDS 2470815..2471105 /gene="tfaS" /locus_tag="b2353" /gene_synonym="ECK2347; JW5383; yfdJ" /note="pseudogene, CPS-53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0007768" /db_xref="UniProtKB/Swiss-Prot:P77326" /db_xref="EcoGene:EG14134" /db_xref="GeneID:946825" gene complement(2471077..2471517) /gene="yfdK" /locus_tag="b2354" /gene_synonym="ECK2348; JW2350" /db_xref="EcoGene:EG14135" /db_xref="GeneID:948822" CDS complement(2471077..2471517) /gene="yfdK" /locus_tag="b2354" /gene_synonym="ECK2348; JW2350" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CPS-53 (KpLE1) prophage; conserved protein" /protein_id="NP_416855.1" /db_xref="GI:16130286" /db_xref="ASAP:ABE-0007770" /db_xref="UniProtKB/Swiss-Prot:P77656" /db_xref="EcoGene:EG14135" /db_xref="GeneID:948822" /translation="MNYIYSATTNSFYPLEMKEDYTQAGSWPDDAVEVDEQVYIEFSG LPPKGKIRIAGENGFPAWSEIPPPTHEEQIAAAELKKQQLINQANDYMNSKQWAGKAA IGRLKGEELAQYNLWLDYLDALELVDTSSAPDIEWPTPPAVQAR" gene complement(2471544..2472122) /gene="yfdL" /locus_tag="b2355" /gene_synonym="ECK2349; JW5384" /pseudo /db_xref="EcoGene:EG14136" /db_xref="GeneID:949099" CDS complement(2471544..2472122) /gene="yfdL" /locus_tag="b2355" /gene_synonym="ECK2349; JW5384" /note="pseudogene, CPS-53 (KpLE1) prophage;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0007773" /db_xref="UniProtKB/Swiss-Prot:P76508" /db_xref="EcoGene:EG14136" /db_xref="GeneID:949099" gene complement(2472118..2472387) /gene="yfdM" /locus_tag="b2356" /gene_synonym="ECK2350; JW2352; yzyB" /pseudo /db_xref="EcoGene:EG12950" /db_xref="GeneID:945416" CDS complement(2472118..2472387) /gene="yfdM" /locus_tag="b2356" /gene_synonym="ECK2350; JW2352; yzyB" /note="CPS-53 (KpLE1) prophage; putative methyltransferase;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0007775" /db_xref="UniProtKB/Swiss-Prot:P76509" /db_xref="EcoGene:EG12950" /db_xref="GeneID:945416" gene complement(2472387..2472881) /gene="yfdN" /locus_tag="b2357" /gene_synonym="ECK2351; JW5385; yzyA" /db_xref="EcoGene:EG12949" /db_xref="GeneID:946419" CDS complement(2472387..2472881) /gene="yfdN" /locus_tag="b2357" /gene_synonym="ECK2351; JW5385; yzyA" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CPS-53 (KpLE1) prophage; uncharacterized protein" /protein_id="NP_416858.1" /db_xref="GI:16130289" /db_xref="ASAP:ABE-0007777" /db_xref="UniProtKB/Swiss-Prot:P76510" /db_xref="EcoGene:EG12949" /db_xref="GeneID:946419" /translation="MSMSLLNDVQKFIEAHPGCTSGDIADAFAGYSRQRVLQSASKLR QSGRVAHRCEGDTHRHFPRLTERAQDPEPQPVRETRPVRNFYVGTNDPRVILCLTRQA EELESRGLYRRAATVWMAAFRESHSQPERNNFLARRERCLRKSSKRAASGEEWYLSGN YVGA" gene complement(2472878..2473585) /gene="oweS" /locus_tag="b2358" /gene_synonym="ECK2352; JW2355; yfdO" /pseudo /db_xref="EcoGene:EG14137" /db_xref="GeneID:947403" CDS complement(2472878..2473585) /gene="oweS" /locus_tag="b2358" /gene_synonym="ECK2352; JW2355; yfdO" /note="pseudogene, CPS-53 (KpLE1) prophage; bacteriophage replication protein O family;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0007779" /db_xref="UniProtKB/Swiss-Prot:P0AD35" /db_xref="EcoGene:EG14137" /db_xref="GeneID:947403" gene 2473604..2473966 /gene="yfdP" /locus_tag="b2359" /gene_synonym="ECK2353; JW2356" /db_xref="EcoGene:EG14138" /db_xref="GeneID:945565" CDS 2473604..2473966 /gene="yfdP" /locus_tag="b2359" /gene_synonym="ECK2353; JW2356" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CPS-53 (KpLE1) prophage; uncharacterized protein" /protein_id="NP_416860.4" /db_xref="GI:145698293" /db_xref="ASAP:ABE-0007785" /db_xref="UniProtKB/Swiss-Prot:P76512" /db_xref="EcoGene:EG14138" /db_xref="GeneID:945565" /translation="MASERSTDVQAFIGELDGGVFETKIGAVLSEVASGVMNTKTKGK VSLNLEIEPFDENRLKIKHKLSYVRPTNRGKISEEDTTETPMYVNRGGRLTILQEDQG QLLTLAGEPDGKLRAAGH" gene 2474032..2474856 /gene="yfdQ" /locus_tag="b2360" /gene_synonym="ECK2354; JW2357" /db_xref="EcoGene:EG14139" /db_xref="GeneID:946827" CDS 2474032..2474856 /gene="yfdQ" /locus_tag="b2360" /gene_synonym="ECK2354; JW2357" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CPS-53 (KpLE1) prophage; uncharacterized protein" /protein_id="NP_416861.1" /db_xref="GI:16130292" /db_xref="ASAP:ABE-0007788" /db_xref="UniProtKB/Swiss-Prot:P76513" /db_xref="EcoGene:EG14139" /db_xref="GeneID:946827" /translation="MSQNLDATAINQIHALISAQGVNEIISKIGADAVALPENFRIHD LEKFNLNRFRFRGALSTASIDDFTRYSKDLADEGTRCFIDADNMRAVSVLNLGTIDEP GHADNTATLKLKKTAPFSALLSVNGERNSQKSLAEWIEDWADYLVGFDANGDAIQATK AAAAIRKITIEANQTADFEDNDFSGKRSLMESVEAKTKDIMPVAFEFKCVPFEGLKER PFKLRLSIITGDRPVLVLRIIQLEAVQEDMANEFRDLLVEKFKDSKVETFIGTFTA" gene 2474984..2475520 /gene="yfdR" /locus_tag="b2361" /gene_synonym="ECK2355; JW2358" /db_xref="EcoGene:EG14140" /db_xref="GeneID:946834" CDS 2474984..2475520 /gene="yfdR" /locus_tag="b2361" /gene_synonym="ECK2355; JW2358" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CPS-53 (KpLE1) prophage; conserved protein" /protein_id="NP_416862.2" /db_xref="GI:90111424" /db_xref="ASAP:ABE-0007791" /db_xref="UniProtKB/Swiss-Prot:P76514" /db_xref="EcoGene:EG14140" /db_xref="GeneID:946834" /translation="MSFIKTFSGKHFYYDKINKDDIVINDIAVSLSNICRFAGHLSHF YSVAQHAVLCSQLVPQEFAFEALMHDATEAYCQDIPAPLKRLLPDYKRMEEKIDAVIR EKYGLPPVMSTPVKYADLIMLATERRDLGLDDGSFWPVLEGIPATEMFNVIPLAPGHA YGMFMERFNDLSELRKCA" gene 2475511..2475873 /gene="yfdS" /locus_tag="b2362" /gene_synonym="ECK2356; JW2359" /db_xref="EcoGene:EG14141" /db_xref="GeneID:946426" CDS 2475511..2475873 /gene="yfdS" /locus_tag="b2362" /gene_synonym="ECK2356; JW2359" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CPS-53 (KpLE1) prophage; uncharacterized protein" /protein_id="NP_416863.1" /db_xref="GI:16130294" /db_xref="ASAP:ABE-0007793" /db_xref="UniProtKB/Swiss-Prot:P76515" /db_xref="EcoGene:EG14141" /db_xref="GeneID:946426" /translation="MRMNVFEMEGFLRGKCVPRDLKVNETNAEYLVRKFDALEAKCAA LENKIIPVSAELPPANESVLLFDANGEGWLIGWRSLWYTWGQKETGEWQWTFQVGDLE NVNITHWAVMPKAPEAGA" gene 2475873..2476178 /gene="yfdT" /locus_tag="b2363" /gene_synonym="ECK2357; JW5887" /db_xref="EcoGene:EG14142" /db_xref="GeneID:946836" CDS 2475873..2476178 /gene="yfdT" /locus_tag="b2363" /gene_synonym="ECK2357; JW5887" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CPS-53 (KpLE1) prophage; uncharacterized protein" /protein_id="NP_416864.1" /db_xref="GI:16130295" /db_xref="ASAP:ABE-0007795" /db_xref="UniProtKB/Swiss-Prot:P76516" /db_xref="EcoGene:EG14142" /db_xref="GeneID:946836" /translation="MTTFTNKELIKEIKERISSLEVRDDIERRAYEIALVSLEVEPDE REAYELFMEKRFGDLVDRRRAKNGDNEYMAWDMTLGWIIWQQRAGIHFSTMSQQEVK" gene 2476181..2476231 /gene="ypdJ" /locus_tag="b4545" /gene_synonym="ECK2358; JW5386" /pseudo /db_xref="EcoGene:EG14428" /db_xref="GeneID:1450283" CDS 2476181..2476231 /gene="ypdJ" /locus_tag="b4545" /gene_synonym="ECK2358; JW5386" /note="exisonase remnant" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0285066" /db_xref="UniProtKB/Swiss-Prot:Q2EET0" /db_xref="EcoGene:EG14428" /db_xref="GeneID:1450283" gene 2476310..2476510 /gene="torI" /locus_tag="b4501" /gene_synonym="ECK2359; JW5387" /db_xref="EcoGene:EG14411" /db_xref="GeneID:1450232" CDS 2476310..2476510 /gene="torI" /locus_tag="b4501" /gene_synonym="ECK2359; JW5387" /codon_start=1 /transl_table=11 /product="response regulator inhibitor for tor operon" /protein_id="YP_588463.1" /db_xref="GI:94541120" /db_xref="ASAP:ABE-0269710" /db_xref="UniProtKB/Swiss-Prot:Q2EES9" /db_xref="EcoGene:EG14411" /db_xref="GeneID:1450232" /translation="MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHG RARWLYRDHCEFKNKLLSRANG" gene 2476584..2476598 /gene="pawZ" /locus_tag="b4643" /gene_synonym="ECK4464" /pseudo /db_xref="EcoGene:EG31173" /db_xref="GeneID:5625569" tRNA 2476584..2476598 /gene="pawZ" /locus_tag="b4643" /gene_synonym="ECK4464" /product="tRNA-OTHER" /pseudo /db_xref="EcoGene:EG31173" /db_xref="GeneID:5625569" gene complement(2476694..2477629) /gene="dsdC" /locus_tag="b2364" /gene_synonym="ECK2360; JW2361" /db_xref="EcoGene:EG13161" /db_xref="GeneID:948828" CDS complement(2476694..2477629) /gene="dsdC" /locus_tag="b2364" /gene_synonym="ECK2360; JW2361" /function="regulator; Degradation of small molecules: Amino acids" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0009063 - cellular amino acid catabolic process; GO:0006350 - transcription" /note="D-serine dehydratase (deaminase) transcriptional activator" /codon_start=1 /transl_table=11 /product="dsd operon activator; autorepressor" /protein_id="NP_416865.1" /db_xref="GI:16130296" /db_xref="ASAP:ABE-0007797" /db_xref="UniProtKB/Swiss-Prot:P46068" /db_xref="EcoGene:EG13161" /db_xref="GeneID:948828" /translation="MEPLREIRNRLLNGWQLSKMHTFEVAARHQSFALAAEELSLSPS AVSHRINQLEEELGIQLFVRSHRKVELTHEGKRVYWALKSSLDTLNQEILDIKNQELS GTLTLYSRPSIAQCWLVPALGDFTRRYPSISLTVLTGNDNVNLQRAGIDLAIYFDDAP SAQLTHHFLMDEEILPVCSPEYAQRHALTNTVINLCHCTLLHDRQAWSNDSGTDEWHS WAQHYAVNLPTSSGIGFDRSDLAVIAAMNHIGVAMGRKRLVQKRLASGELVAPFGDMT VKCHQHYYITTLPGRQWPKIEAFIIWLREQVKTTS" gene 2477847..2479184 /gene="dsdX" /locus_tag="b2365" /gene_synonym="dsdC; ECK2361; JW2362; yfdA; yfdD" /db_xref="EcoGene:EG10250" /db_xref="GeneID:949103" CDS 2477847..2479184 /gene="dsdX" /locus_tag="b2365" /gene_synonym="dsdC; ECK2361; JW2362; yfdA; yfdD" /function="transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="D-serine transporter" /protein_id="NP_416866.1" /db_xref="GI:16130297" /db_xref="ASAP:ABE-0007801" /db_xref="UniProtKB/Swiss-Prot:P08555" /db_xref="EcoGene:EG10250" /db_xref="GeneID:949103" /translation="MHSQIWVVSTLLISIVLIVLTIVKFKFHPFLALLLASFFVGTMM GMGPLDMVNAIESGIGGTLGFLAAVIGLGTILGKMMEVSGAAERIGLTLQRCRWLSVD VIMVLVGLICGITLFVEVGVVLLIPLAFSIAKKTNTSLLKLAIPLCTALMAVHCVVPP HPAALYVANKLGADIGSVIVYGLLVGLMASLIGGPLFLKFLGQRLPFKPVPTEFADLK VRDEKTLPSLGATLFTILLPIALMLVKTIAELNMARESGLYILVEFIGNPITAMFIAV FVAYYVLGIRQHMSMGTMLTHTENGFGSIANILLIIGAGGAFNAILKSSSLADTLAVI LSNMHMHPILLAWLVALILHAAVGSATVAMMGATAIVAPMLPLYPDISPEIIAIAIGS GAIGCTIVTDSLFWLVKQYCGATLNETFKYYTTATFIASVVALAGTFLLSFII" gene 2479202..2480530 /gene="dsdA" /locus_tag="b2366" /gene_synonym="ECK2362; JW2363" /db_xref="EcoGene:EG10249" /db_xref="GeneID:946837" CDS 2479202..2480530 /gene="dsdA" /locus_tag="b2366" /gene_synonym="ECK2362; JW2363" /EC_number="4.3.1.18" /function="enzyme; Degradation of small molecules: Amino acids" /experiment="N-terminus verified by Edman degradation: PMID 795658,9222324" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009063 - cellular amino acid catabolic process" /note="D-serine dehydratase (deaminase)" /codon_start=1 /transl_table=11 /product="D-serine dehydratase" /protein_id="NP_416867.1" /db_xref="GI:16130298" /db_xref="ASAP:ABE-0007804" /db_xref="UniProtKB/Swiss-Prot:P00926" /db_xref="EcoGene:EG10249" /db_xref="GeneID:946837" /translation="MENAKMNSLIAQYPLVKDLVALKETTWFNPGTTSLAEGLPYVGL TEQDVQDAHARLSRFAPYLAKAFPETAATGGIIESELVAIPAMQKRLEKEYQQPISGQ LLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQ YSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGV AVEEGRKAAQSDPNCFFIDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYL PCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNL TAADGLAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMA GPQRVCASVSYQQMHGFSAEQLRNTTHLVWATGGGMVPEEEMNQYLAKGR" gene complement(2480638..2482176) /gene="emrY" /locus_tag="b2367" /gene_synonym="ECK2363; JW2364" /db_xref="EcoGene:EG13283" /db_xref="GeneID:946835" CDS complement(2480638..2482176) /gene="emrY" /locus_tag="b2367" /gene_synonym="ECK2363; JW2364" /function="putative transport; Drug/analog sensitivity" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042493 - response to drug" /note="multidrug resistance protein Y" /codon_start=1 /transl_table=11 /product="putative multidrug efflux system" /protein_id="NP_416868.1" /db_xref="GI:16130299" /db_xref="ASAP:ABE-0007806" /db_xref="UniProtKB/Swiss-Prot:P52600" /db_xref="EcoGene:EG13283" /db_xref="GeneID:946835" /translation="MAITKSTPAPLTGGTLWCVTIALSLATFMQMLDSTISNVAIPTI SGFLGASTDEGTWVITSFGVANAIAIPVTGRLAQRIGELRLFLLSVTFFSLSSLMCSL STNLDVLIFFRVVQGLMAGPLIPLSQSLLLRNYPPEKRTFALALWSMTVIIAPICGPI LGGYICDNFSWGWIFLINVPMGIIVLTLCLTLLKGRETETSPVKMNLPGLTLLVLGVG GLQIMLDKGRDLDWFNSSTIIILTVVSVISLISLVIWESTSENPILDLSLFKSRNFTI GIVSITCAYLFYSGAIVLMPQLLQETMGYNAIWAGLAYAPIGIMPLLISPLIGRYGNK IDMRLLVTFSFLMYAVCYYWRSVTFMPTIDFTGIILPQFFQGFAVACFFLPLTTISFS GLPDNKFANASSMSNFFRTLSGSVGTSLTMTLWGRRESLHHSQLTATIDQFNPVFNSS SQIMDKYYGSLSGVLNEINNEITQQSLSISANEIFRMAAIAFILLTVLVWFAKPPFTA KGVG" gene complement(2482176..2483339) /gene="emrK" /locus_tag="b2368" /gene_synonym="ECK2364; JW2365" /db_xref="EcoGene:EG13282" /db_xref="GeneID:946840" CDS complement(2482176..2483339) /gene="emrK" /locus_tag="b2368" /gene_synonym="ECK2364; JW2365" /function="putative transport; Drug/analog sensitivity" /GO_process="GO:0042493 - response to drug" /note="multidrug resistance protein K" /codon_start=1 /transl_table=11 /product="multidrug resistance efflux pump membrane fusion protein" /protein_id="NP_416869.1" /db_xref="GI:16130300" /db_xref="ASAP:ABE-0007808" /db_xref="UniProtKB/Swiss-Prot:P52599" /db_xref="EcoGene:EG13282" /db_xref="GeneID:946840" /translation="MEQINSNKKHSNRRKYFSLLAVVLFIAFSGAYAYWSMELEDMIS TDDAYVTGNADPISAQVSGSVTVVNHKDTNYVRQGDILVSLDKTDATIALNKAKNNLA NIVRQTNKLYLQDKQYSAEVASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTL ISSKAALNAAIQAYKANKALVMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGY IAQRSVQVGETVSPGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENV VFHGRVTGINMGTGNAFSLLPAQNATGNWIKIVQRVPVEVSLDPKELMEHPLRIGLSM TATIDTKNEDIAEMPELASTVTSMPAYTSKALVIDTSPIEKEISNIISHNGQL" gene 2483755..2484369 /gene="evgA" /locus_tag="b2369" /gene_synonym="ECK2365; JW2366" /db_xref="EcoGene:EG11609" /db_xref="GeneID:946841" CDS 2483755..2484369 /gene="evgA" /locus_tag="b2369" /gene_synonym="ECK2365; JW2366" /function="putative regulator; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="putative positive transcription regulator (sensor EvgS)" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with EvgS" /protein_id="NP_416870.1" /db_xref="GI:16130301" /db_xref="ASAP:ABE-0007817" /db_xref="UniProtKB/Swiss-Prot:P0ACZ4" /db_xref="EcoGene:EG11609" /db_xref="GeneID:946841" /translation="MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSK KEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKD NNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG" gene 2484374..2487967 /gene="evgS" /locus_tag="b2370" /gene_synonym="ECK2366; JW2367" /db_xref="EcoGene:EG11610" /db_xref="GeneID:946844" CDS 2484374..2487967 /gene="evgS" /locus_tag="b2370" /gene_synonym="ECK2366; JW2367" /function="putative regulator; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006464 - protein modification process" /note="putative sensor for regulator EvgA" /codon_start=1 /transl_table=11 /product="hybrid sensory histidine kinase in two-component regulatory system with EvgA" /protein_id="NP_416871.1" /db_xref="GI:16130302" /db_xref="ASAP:ABE-0007819" /db_xref="UniProtKB/Swiss-Prot:P30855" /db_xref="EcoGene:EG11610" /db_xref="GeneID:946844" /translation="MKFLPYIFLLCCGLWSTISFADEDYIEYRGISSNNRVTLDPLRL SNKELRWLASKKNLVIAVHKSQTATLLHTDSQQRVRGINADYLNLLKRALNIKLTLRE YADHQKAMDALAEGEVDIVLSHLVTSPPLNNDIAATKPLIITFPALVTTLHDSMRPLT SPKPVNIARVANYPPDEVIHQSFPKATIISFTNLYQALASVSAGHNDYFIGSNIITSS MISRYFTHSLNVVKYYNSPRQYNFFLTRKESVILNEVLNRFVDALTNEVRYEVSQNWL DTGNLAFLNKPLELTEHEKQWIKQHPNLKVLENPYSPPYSMTDENGSVRGVMGDILNI ITLQTGLNFSPITVSHNIHAGTQLSPGGWDIIPGAIYSEDRENNVLFAEAFITTPYVF VMQKAPDSEQTLKKGMKVAIPYYYELHSQLKEMYPEVEWIQVDNASAAFHKVKEGELD ALVATQLNSRYMIDHYYPNELYHFLIPGVPNASLSFAFPRGEPELKDIINKALNAIPP SEVLRLTEKWIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKV IQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENS DSPFKDVFSNAHEVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYI CGWQDITETRDLINALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGS GLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHS FGAIAASKSIALSCSSTFPEHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLG HIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNM QGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAEQPITLPEKLSILIADDHPTNRL LLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQNSS LPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQVAHIAPQYRHLDI EALKNNTANDLQLMQEILMTFQHETHKDLPAAFQALEAGDNRTFHQCIHRIHGAANIL NLQKLINISHQLEITPVSDDSKPEILQLLNSVKEHIAELDQEIAVFCQKND" gene complement(2488023..2489168) /gene="yfdE" /locus_tag="b2371" /gene_synonym="ECK2367; JW2368" /db_xref="EcoGene:EG13284" /db_xref="GeneID:946432" CDS complement(2488023..2489168) /gene="yfdE" /locus_tag="b2371" /gene_synonym="ECK2367; JW2368" /function="putative enzyme; Not classified" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="acetyl-CoA:oxalate CoA-transferase" /protein_id="NP_416872.4" /db_xref="GI:162135906" /db_xref="ASAP:ABE-0007821" /db_xref="UniProtKB/Swiss-Prot:P76518" /db_xref="EcoGene:EG13284" /db_xref="GeneID:946432" /translation="MTNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPP GHGDDTRTFGPYVDGQSLYYSFINHGKESVVLDLKNDHDKSIFINMLKQADVLAENFR PGTMEKLGFSWETLQEINPRLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYP DAPPVRVGTSLADLCGGVYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMA YIATGKSPQRLGNRHPYMAPFDVFNTQDKPITICCGNDKLFSALCQALELTELVNDPR FSSNILRVQNQAILKQYIERTLKTQAAEVWLARIHEVGVPVAPLLSVAEAIKLPQTQA RNMLIEAGGIMMPGNPIKISGCADPHVMPGAATLDQHGEQIRQEFSS" gene complement(2489242..2490186) /gene="yfdV" /locus_tag="b2372" /gene_synonym="ECK2368; JW2369" /db_xref="EcoGene:EG14144" /db_xref="GeneID:949110" CDS complement(2489242..2490186) /gene="yfdV" /locus_tag="b2372" /gene_synonym="ECK2368; JW2369" /function="putative factor; Not classified" /note="putative receptor protein" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="NP_416873.1" /db_xref="GI:16130304" /db_xref="ASAP:ABE-0007824" /db_xref="UniProtKB/Swiss-Prot:P0AA49" /db_xref="EcoGene:EG14144" /db_xref="GeneID:949110" /translation="MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYA LPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCAL IAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKK NSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLT LAAHKFEFSAEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGII IASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS" gene complement(2490256..2491950) /gene="oxc" /locus_tag="b2373" /gene_synonym="ECK2369; JW2370; yfdU" /db_xref="EcoGene:EG14143" /db_xref="GeneID:946845" CDS complement(2490256..2491950) /gene="oxc" /locus_tag="b2373" /gene_synonym="ECK2369; JW2370; yfdU" /function="enzyme; Oxalate catabolism" /codon_start=1 /transl_table=11 /product="oxalyl CoA decarboxylase, ThDP-dependent" /protein_id="NP_416874.1" /db_xref="GI:16130305" /db_xref="ASAP:ABE-0007826" /db_xref="UniProtKB/Swiss-Prot:P0AFI0" /db_xref="EcoGene:EG14143" /db_xref="GeneID:946845" /translation="MSDQLQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAE GIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMI SGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPG GVYLDLPANVLAATMEKDEALTTIVKVENPSPALLPCPKSVTSAISLLAKAERPLIIL GKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVML VGARLNWLLAHGKKGWAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELK QNTFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQDIYLV NEGANTLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVTSGSPVVAIEGDSAF GFSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPSPTDLLHHARYDKLMDA FRGVGYNVTTTDELRHALTTGIQSRKPTIINVVIDPAAGTESGHITKLNPKQVAGN" gene complement(2492004..2493254) /gene="frc" /locus_tag="b2374" /gene_synonym="ECK2370; JW2371; yfdW" /db_xref="EcoGene:EG14145" /db_xref="GeneID:946842" CDS complement(2492004..2493254) /gene="frc" /locus_tag="b2374" /gene_synonym="ECK2370; JW2371; yfdW" /function="enzyme; Oxalate catabolism" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="formyl-CoA transferase, NAD(P)-binding" /protein_id="NP_416875.1" /db_xref="GI:16130306" /db_xref="ASAP:ABE-0007828" /db_xref="UniProtKB/Swiss-Prot:P69902" /db_xref="EcoGene:EG14145" /db_xref="GeneID:946842" /translation="MSTPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDV TRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAI DHMGFTWEHIQEINPRLIFGSIKGFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPP LVSAAALGDSNTGMHLLIGLLAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRL DKLGYLEEYPQYPNGTFGDAVPRGGNAGGGGQPGWILKCKGWETDPNAYIYFTIQEQN WENTCKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTIDKHEAVAYLTQFDIP CAPVLSMKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPMKFSAFTPDIKAAPLLGEH TAAVLQELGYSDDEIAAMKQNHAI" gene complement(2493767..2494402) /gene="yfdX" /locus_tag="b2375" /gene_synonym="ECK2371; JW2372" /db_xref="EcoGene:EG14146" /db_xref="GeneID:949108" CDS complement(2493767..2494402) /gene="yfdX" /locus_tag="b2375" /gene_synonym="ECK2371; JW2372" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416876.1" /db_xref="GI:16130307" /db_xref="ASAP:ABE-0007835" /db_xref="UniProtKB/Swiss-Prot:P76520" /db_xref="EcoGene:EG14146" /db_xref="GeneID:949108" /translation="MKRLIMATMVTAILASSTVWAADNAPVAAQQQTQQVQQTQKTAA AAERISEQGLYAMRDVQVARLALFHGDPEKAKELTNEASALLSDDSTEWAKFAKPGKK TNLNDDQYIVINASVGISESYVATPEKEAAIKIANEKMAKGDKKGAMEELRLAGVGVM ENQYLMPLKQTRNALADAQKLLDKKQYYEANLALKGAEDGIIVDSEALFVN" gene 2494698..2494973 /gene="ypdI" /locus_tag="b2376" /gene_synonym="ECK2372; JW2373" /db_xref="EcoGene:EG14376" /db_xref="GeneID:949107" CDS 2494698..2494973 /gene="ypdI" /locus_tag="b2376" /gene_synonym="ECK2372; JW2373" /codon_start=1 /transl_table=11 /product="putative lipoprotein involved in colanic acid biosynthesis" /protein_id="NP_416877.1" /db_xref="GI:16130308" /db_xref="ASAP:ABE-0007839" /db_xref="UniProtKB/Swiss-Prot:O32528" /db_xref="EcoGene:EG14376" /db_xref="GeneID:949107" /translation="MKVNLILFSLFLLVSIMACNVFAFSISGGGSERSYKETEKTSAM TTTHSTKLQPSQAILFKMREDAPPLNLTEEMPPPFPTKANYLIHPVR" gene complement(2495050..2495292) /gene="yfdY" /locus_tag="b2377" /gene_synonym="ECK2373; JW2374" /db_xref="EcoGene:EG14147" /db_xref="GeneID:948842" CDS complement(2495050..2495292) /gene="yfdY" /locus_tag="b2377" /gene_synonym="ECK2373; JW2374" /codon_start=1 /transl_table=11 /product="DUF2545 family putative inner membrane protein" /protein_id="NP_416878.1" /db_xref="GI:16130309" /db_xref="ASAP:ABE-0007841" /db_xref="UniProtKB/Swiss-Prot:P76521" /db_xref="EcoGene:EG14147" /db_xref="GeneID:948842" /translation="MINLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYY FTMWLTGGNELVTGIFMFLAPACGLMIRFMVGYGRR" gene 2495645..2496565 /gene="lpxP" /locus_tag="b2378" /gene_synonym="ddg; ECK2374; JW2375" /db_xref="EcoGene:EG12901" /db_xref="GeneID:946847" CDS 2495645..2496565 /gene="lpxP" /locus_tag="b2378" /gene_synonym="ddg; ECK2374; JW2375" /function="enzyme; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009245 - lipid A biosynthetic process; GO:0009266 - response to temperature stimulus" /note="putative heat shock protein" /codon_start=1 /transl_table=11 /product="palmitoleoyl-acyl carrier protein (ACP)-dependent acyltransferase" /protein_id="NP_416879.4" /db_xref="GI:90111426" /db_xref="ASAP:ABE-0007848" /db_xref="UniProtKB/Swiss-Prot:P0ACV2" /db_xref="EcoGene:EG12901" /db_xref="GeneID:946847" /translation="MFPQCKFSREFLHPRYWLTWFGLGVLWLWVQLPYPVLCFLGTRI GAMARPFLKRRESIARKNLELCFPQHSAEEREKMIAENFRSLGMALVETGMAWFWPDS RVRKWFDVEGLDNLKRAQMQNRGVMVVGVHFMSLELGGRVMGLCQPMMATYRPHNNQL MEWVQTRGRMRSNKAMIGRNNLRGIVGALKKGEAVWFAPDQDYGRKGSSFAPFFAVEN VATTNGTYVLSRLSGAAMLTVTMVRKADYSGYRLFITPEMEGYPTDENQAAAYMNKII EKEIMRAPEQYLWIHRRFKTRPVGESSLYI" gene 2496921..2496992 /gene="ypdK" /locus_tag="b4680" /gene_synonym="ECK4495" /db_xref="EcoGene:EG14485" /db_xref="GeneID:7751622" CDS 2496921..2496992 /gene="ypdK" /locus_tag="b4680" /gene_synonym="ECK4495" /codon_start=1 /transl_table=11 /product="inner membrane protein" /protein_id="YP_002791250.1" /db_xref="GI:226524735" /db_xref="UniProtKB/Swiss-Prot:C1P610" /db_xref="EcoGene:EG14485" /db_xref="GeneID:7751622" /translation="MKYFFMGISFMVIVWAGTFALMI" gene complement(2497057..2498295) /gene="alaC" /locus_tag="b2379" /gene_synonym="ECK2375; JW2376; yfdZ" /db_xref="EcoGene:EG14198" /db_xref="GeneID:946850" CDS complement(2497057..2498295) /gene="alaC" /locus_tag="b2379" /gene_synonym="ECK2375; JW2376; yfdZ" /EC_number="2.6.1.2" /function="enzyme; Amino acid biosynthesis: Alanine" /note="putative aminotransferase" /codon_start=1 /transl_table=11 /product="glutamate-pyruvate aminotransferase; glutamic-pyruvic transaminase (GPT); alanine transaminase" /protein_id="NP_416880.1" /db_xref="GI:16130311" /db_xref="ASAP:ABE-0007850" /db_xref="UniProtKB/Swiss-Prot:P77434" /db_xref="EcoGene:EG14198" /db_xref="GeneID:946850" /translation="MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMG NPDGATPPHIVEKLCTVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVEIDPESEAI VTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVY DGWKAPSIMQVPGARDVAVEFFTLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYG TFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKI PEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKA MFRADGLLPASSKHIHENAE" gene 2498671..2500368 /gene="ypdA" /locus_tag="b2380" /gene_synonym="ECK2376; JW5388" /db_xref="EcoGene:EG14148" /db_xref="GeneID:946723" CDS 2498671..2500368 /gene="ypdA" /locus_tag="b2380" /gene_synonym="ECK2376; JW5388" /function="putative regulator; Not classified" /note="putative sensor protein" /codon_start=1 /transl_table=11 /product="sensor kinase regulating yhjX; pyruvate-responsive YpdAB two-component system" /protein_id="NP_416881.1" /db_xref="GI:16130312" /db_xref="ASAP:ABE-0007855" /db_xref="UniProtKB/Swiss-Prot:P0AA93" /db_xref="EcoGene:EG14148" /db_xref="GeneID:946723" /translation="MHEIFNMLLAVFDRAALMLICLFFLIRIRLFRELLHKSAHSPKE LLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMSGGILFGPWVGIITGVIAGIHRY LIDIGGVTAIPCFITSILAGCISGWINLKIPKAQRWRVGILGGMLCETLTMILVIVWA PTTALGIDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLP LFRHVNSESLRKVCEIIRDDIHADAVAITNTDHVLAYVGVGEHNYQNGDDFISPTTRQ AMNYGKIIIKNNDEAHRTPEIHSMLVIPLWEKGVVTGTLKIYYCHAHQITSSLQEMAV GLSQIISTQLEVSRAEQLREMANKAELRALQSKINPHFLFNALNAISSSIRLNPDTAR QLIFNLSRYLRYNIELKDDEQIDIKKELYQIKDYIAIEQARFGDKLTVIYDIDEEVNC CIPSLLIQPLVENAIVHGIQPCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERV EANEMPGNKIGLLNVHHRVKLLYGEGLHIRRLEPGTEIAFYIPNQRTPVASQATLLL" gene 2500383..2501117 /gene="ypdB" /locus_tag="b2381" /gene_synonym="ECK2377; JW2378" /db_xref="EcoGene:EG14149" /db_xref="GeneID:947395" CDS 2500383..2501117 /gene="ypdB" /locus_tag="b2381" /gene_synonym="ECK2377; JW2378" /function="putative regulator; Not classified" /GO_process="GO:0006350 - transcription" /note="putative 2-component transcriptional regulator" /codon_start=1 /transl_table=11 /product="response regulator activating yhjX; pyruvate-responsive YpdAB two-component system" /protein_id="NP_416882.1" /db_xref="GI:16130313" /db_xref="ASAP:ABE-0007857" /db_xref="UniProtKB/Swiss-Prot:P0AE39" /db_xref="EcoGene:EG14149" /db_xref="GeneID:947395" /translation="MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQH NRVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKP YQESRITGMLQKLEAAWQQQQTSSTPAATVTRENDTINLVKDERIIVTPINDIYYAEA HEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYI LRLKDLDFEVPVSRSKVKEFRQLMHL" gene 2501130..2501987 /gene="ypdC" /locus_tag="b2382" /gene_synonym="ECK2378; JW2379" /db_xref="EcoGene:EG14150" /db_xref="GeneID:946856" CDS 2501130..2501987 /gene="ypdC" /locus_tag="b2382" /gene_synonym="ECK2378; JW2379" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="putative ARAC-type regulatory protein" /codon_start=1 /transl_table=11 /product="putative DNA-binding protein" /protein_id="NP_416883.1" /db_xref="GI:16130314" /db_xref="ASAP:ABE-0007859" /db_xref="UniProtKB/Swiss-Prot:P77396" /db_xref="EcoGene:EG14150" /db_xref="GeneID:946856" /translation="MKAPGLPADQQFFADLFSGLVLNPQLLGRVWFASQPASLPVGSL CIDFPRLDIVLRGEYGNLLEAKQQRLVEGEMLFIPARAANLPVNNKPVMLLSLVFAPT WLGLSFYDSRTTSLLHPARQIQLPSLQRGEGEAMLTALTHLSRSPLEQNIIQPLVLSL LHLCRSVVNMPPGNSQPRGDFLYHSICNWVQDNYAQPLTRESVAQFFNITPNHLSKLF AQHGTMRFIEYVRWVRMAKARMILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTP GEYSARFQG" gene complement(2501990..2504485) /gene="fryA" /locus_tag="b2383" /gene_synonym="ECK2379; JW2380; ypdD" /db_xref="EcoGene:EG14151" /db_xref="GeneID:946852" CDS complement(2501990..2504485) /gene="fryA" /locus_tag="b2383" /gene_synonym="ECK2379; JW2380; ypdD" /function="putative transport; Not classified" /GO_process="GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system" /note="putative PTS system enzyme IIA component, enzyme I" /codon_start=1 /transl_table=11 /product="putative PTS enzyme: Hpr, enzyme I and IIA components" /protein_id="NP_416884.1" /db_xref="GI:16130315" /db_xref="ASAP:ABE-0007861" /db_xref="UniProtKB/Swiss-Prot:P77439" /db_xref="EcoGene:EG14151" /db_xref="GeneID:946852" /translation="MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEITFINHRQNAKA DAKSSLALIGTGTLFNDSCSLNISGSDEEQARRVLEEYIQVRFIDSDSVQPTQAELTA HPLPRSLSRLNPDLLYGNVLASGVGVGTLTLLQSDSLDSYRAIPASAQDSTRLEHSLA TLAEQLNQQLRERDGESKTILSAHLSLIQDDEFAGNIRRLMTEQHQGLGAAIISNMEQ VCAKLSASASDYLRERVSDIRDISEQLLHITWPELKPRNKLVLEKPTILVAEDLTPSQ FLSLDLKNLAGMILEKTGRTSHTLILARASAIPVLSGLPLDAIARYAGQPAVLDAQCG VLAINPNDAVSGYYQVAQTLADKRQKQQAQAAAQLAYSRDNKRIDIAANIGTALEAPG AFANGAEGVGLFRTEMLYMDRDSAPDEQEQFEAYQQVLLAAGDKPIIFRTMDIGGDKS IPYLNIPQEENPFLGYRAVRIYPEFAGLFRTQLRAILRAASFGNAQLMIPMVHSLDQI LWVKGEIQKAIVELKRDGLRHAETITLGIMVEVPSVCYIIDHFCDEVDFFSIGSNDMT QYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTTAHQRGKWVGICGELGGESRYLPLL LGLGLDELSMSSPRIPAVKSQLRQLDSEACRELARQACECRSAQEIEALLTAFTPEED VRPLLALENIFVDQDFSNKEQAIQFLCGNLGVNGRTEHPFELEEDVWQREEIVTTGVG FGVAIPHTKSQWIRHSSISIARLAKPIGWQSEMGEVELVIMLTLGANEGMNHVKVFSQ LARKLVNKNFRQSLFAAQDAQSILTLLETELTF" gene complement(2504510..2505547) /gene="ypdE" /locus_tag="b2384" /gene_synonym="ECK2380; JW2381" /db_xref="EcoGene:EG14152" /db_xref="GeneID:946848" CDS complement(2504510..2505547) /gene="ypdE" /locus_tag="b2384" /gene_synonym="ECK2380; JW2381" /codon_start=1 /transl_table=11 /product="aminopeptidase" /protein_id="NP_416885.1" /db_xref="GI:16130316" /db_xref="ASAP:ABE-0007864" /db_xref="UniProtKB/Swiss-Prot:P77585" /db_xref="EcoGene:EG14152" /db_xref="GeneID:946848" /translation="MDLSLLKALSEADAIASSEQEVRQILLEEADRLQKEVRFDGLGS VLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTR EECKIPGLLDGDRQGNDVSAMRVDIGARSYDEVMQAGIRPGDRVTFDTTFQVLPHQRV MGKAFDDRLGCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAI VLDTACWAKNFDYGAANHRQIGNGPMLVLSDKSLIAPPKLTAWVETVAAEIGVPLQAD MFSNGGTDGGAVHLTGTGVPTVVMGPATRHGHCAASIADCRDILQMQQLLSALIQRLT RETVVQLTDFR" gene complement(2505547..2506632) /gene="ypdF" /locus_tag="b2385" /gene_synonym="ECK2381; JW2382" /db_xref="EcoGene:EG14153" /db_xref="GeneID:946853" CDS complement(2505547..2506632) /gene="ypdF" /locus_tag="b2385" /gene_synonym="ECK2381; JW2382" /function="putative enzyme; Not classified" /note="putative peptidase" /codon_start=1 /transl_table=11 /product="Xaa-Pro aminopeptidase" /protein_id="NP_416886.1" /db_xref="GI:16130317" /db_xref="ASAP:ABE-0007869" /db_xref="UniProtKB/Swiss-Prot:P76524" /db_xref="EcoGene:EG14153" /db_xref="GeneID:946853" /translation="MTLLASLRDWLKAQQLDAVLLSSRQNKQPHLGISTGSGYVVISR ESAHILVDSRYYVEVEARAQGYQLHLLDATNTLTTIVNQIIADEQLQTLGFEGQQVSW ETAHRWQSELNAKLVSATPDVLRQIKTPEEVEKIRLACGIADRGAEHIRRFIQAGMSE REIAAELEWFMRQQGAEKASFDTIVASGWRGALPHGKASDKIVAAGEFVTLDFGALYQ GYCSDMTRTLLVNGEGVSAESHLLFNVYQIVLQAQLAAISAIRPGVRCQQVDDAARRV ITEAGYGDYFGHNTGHAIGIEVHEDPRFSPRDTTTLQPGMLLTVEPGIYLPGQGGVRI EDVVLVTPQGAEVLYAMPKTVLLTGEA" gene complement(2506647..2507894) /gene="fryC" /locus_tag="b2386" /gene_synonym="ECK2382; JW2383; ypdG" /db_xref="EcoGene:EG14154" /db_xref="GeneID:949111" CDS complement(2506647..2507894) /gene="fryC" /locus_tag="b2386" /gene_synonym="ECK2382; JW2383; ypdG" /function="putative transport; Not classified" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="putative enzyme IIC component of PTS" /protein_id="NP_416887.1" /db_xref="GI:16130318" /db_xref="ASAP:ABE-0007871" /db_xref="UniProtKB/Swiss-Prot:P77579" /db_xref="EcoGene:EG14154" /db_xref="GeneID:949111" /translation="MAIKKRSATVVPGASGAAAAVKNPQASKTSFWGELPQHVMSGIS RMVPTLIMGGVILAFSQLIAYSWLKIPAEIGIMDALNSGKFSGFDLSLLKFAWLSQSF GGVLFGFAIPMFAAFVANSIGGKLAFPAGFIGGLMSTQPTQLLNFDPSTMQWATSSPV PSTFIGALIISIVAGYLVKWMNQKIQLPDFLLAFKTTFLLPILSAIFVMLAMYYVITP FGGWINGGIRTVLTAAGEKGALMYAMGIAAATAIDLGGPINKAAGFVAFSFTTDHVLP VTARSIAIVIPPIGLGLATIIDRRLTGKRLFNAQLYPQGKTAMFLAFMGISEGAIPFA LESPITAIPSYMVGAIVGSTAAVWLGAVQWFPESAIWAWPLVTNLGVYMAGIALGAVI TALMVVFLRLMMFRKGKLLIDSL" gene complement(2507916..2508242) /gene="fryB" /locus_tag="b2387" /gene_synonym="ECK2383; JW5389; ypdH" /db_xref="EcoGene:EG14155" /db_xref="GeneID:949087" CDS complement(2507916..2508242) /gene="fryB" /locus_tag="b2387" /gene_synonym="ECK2383; JW5389; ypdH" /function="putative transport; Not classified" /GO_process="GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system" /note="putative PTS system enzyme IIB component" /codon_start=1 /transl_table=11 /product="putative enzyme IIB component of PTS" /protein_id="NP_416888.1" /db_xref="GI:16130319" /db_xref="ASAP:ABE-0007873" /db_xref="UniProtKB/Swiss-Prot:P69808" /db_xref="EcoGene:EG14155" /db_xref="GeneID:949087" /translation="MSKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGAD GIQNRLTAQDIAEATIIIHSVAVTPEDNERFESRDVYEITLQDAIKNAAGIIKEIEEM IASEQQ" gene complement(2508461..2509426) /gene="glk" /locus_tag="b2388" /gene_synonym="ECK2384; JW2385" /db_xref="EcoGene:EG12957" /db_xref="GeneID:946858" CDS complement(2508461..2509426) /gene="glk" /locus_tag="b2388" /gene_synonym="ECK2384; JW2385" /EC_number="2.7.1.2" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="glucokinase" /protein_id="NP_416889.1" /db_xref="GI:16130320" /db_xref="ASAP:ABE-0007875" /db_xref="UniProtKB/Swiss-Prot:P0A6V8" /db_xref="EcoGene:EG12957" /db_xref="GeneID:946858" /translation="MTKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAV IRVYLEEHKVEVKDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFT AVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGH VDFAPNSEEEAIILEILRAEIGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDI TERALADSCTDCRRALSLFCVIMGRFGGNLALNLGTFGGVFIAGGIVPRFLEFFKASG FRAAFEDKGRFKEYVHDIPVYLIVHDNPGLLGSGAHLRQTLGHIL" gene 2509630..2510886 /gene="yfeO" /locus_tag="b2389" /gene_synonym="ECK2385; JW2386" /db_xref="EcoGene:EG14156" /db_xref="GeneID:946854" CDS 2509630..2510886 /gene="yfeO" /locus_tag="b2389" /gene_synonym="ECK2385; JW2386" /codon_start=1 /transl_table=11 /product="putative ion channel protein" /protein_id="NP_416890.1" /db_xref="GI:16130321" /db_xref="ASAP:ABE-0007880" /db_xref="UniProtKB/Swiss-Prot:P67729" /db_xref="EcoGene:EG14156" /db_xref="GeneID:946854" /translation="MLHPRARTMLLLSLPAVAIGIASSLILIVVMKIASVLQNLLWQR LPGTLGIAQDSPLWIIGVLTLTGIAVGLVIRFSQGHAGPDPACEPLIGAPVPPSALPG LIVALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVNRMEWTILASAGTIGALF GTPVAAALIFSQTLNGSSEVPLWDRLFAPLMAAAAGALTTGLFFHPHFSLPIAHYGQM EMTDILSGAIVAAIAIAAGMVAVWCLPRLHAMMHQMKNPVLVLGIGGFILGILGVIGG PVSLFKGLDEMQQMVANQAFSTSDYFLLAVIKLAALVVAAASGFRGGRIFPAVFVGVA LGLMLHEHVPAVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPNTTLLPLLCIVML PAWLLLAGKPMMMVNRPKQQPPHDNV" gene 2511001..2511327 /gene="ypeC" /locus_tag="b2390" /gene_synonym="ECK2386; JW2387" /db_xref="EcoGene:EG14385" /db_xref="GeneID:946855" CDS 2511001..2511327 /gene="ypeC" /locus_tag="b2390" /gene_synonym="ECK2386; JW2387" /note="the overlapping reading frame (b2391) is no longer thought to be an actual gene, and has been deaccessioned" /codon_start=1 /transl_table=11 /product="DUF2502 family putative periplasmic protein" /protein_id="NP_416891.1" /db_xref="GI:16130322" /db_xref="ASAP:ABE-0007883" /db_xref="UniProtKB/Swiss-Prot:P64542" /db_xref="EcoGene:EG14385" /db_xref="GeneID:946855" /translation="MFRSLFLAAALMAFTPLAANAGEITLLPSIKLQIGDRDHYGNYW DGGHWRDRDYWHRNYEWRKNRWWRHDNGYHRGWDKRKAYERGYREGWRDRDDHRGKGR GHGHRH" repeat_region 2511352..2511439 /note="REP172 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(2511468..2512706) /gene="mntH" /locus_tag="b2392" /gene_synonym="ECK2387; JW2388; mntA; yfeP" /db_xref="EcoGene:EG14157" /db_xref="GeneID:946899" CDS complement(2511468..2512706) /gene="mntH" /locus_tag="b2392" /gene_synonym="ECK2387; JW2388; mntA; yfeP" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006805 - xenobiotic metabolic process" /codon_start=1 /transl_table=11 /product="manganese/divalent cation transporter" /protein_id="NP_416893.1" /db_xref="GI:16130324" /db_xref="ASAP:ABE-0007889" /db_xref="UniProtKB/Swiss-Prot:P0A769" /db_xref="EcoGene:EG14157" /db_xref="GeneID:946899" /translation="MTNYRVESSSGRAARKMRLALMGPAFIAAIGYIDPGNFATNIQA GASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAE IIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL LLFVAAAYIVELIFSQPNLAQLGKGMVIPSLPTSEAVFLAAGVLGATIMPHVIYLHSS LTQHLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAY LTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVTMLP SFIVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSDSKLMGDLVNSKRVKQTGWV IVVLVVALNIWLLVGTALGL" gene 2513042..2514244 /gene="nupC" /locus_tag="b2393" /gene_synonym="cru; ECK2388; JW2389" /db_xref="EcoGene:EG11971" /db_xref="GeneID:946895" CDS 2513042..2514244 /gene="nupC" /locus_tag="b2393" /gene_synonym="cru; ECK2388; JW2389" /function="transport; Transport of small molecules: Nucleosides, purines, pyrimidines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /note="permease of transport system for 3 nucleosides" /codon_start=1 /transl_table=11 /product="nucleoside (except guanosine) transporter" /protein_id="NP_416894.1" /db_xref="GI:16130325" /db_xref="ASAP:ABE-0007893" /db_xref="UniProtKB/Swiss-Prot:P0AFF2" /db_xref="EcoGene:EG11971" /db_xref="GeneID:946895" /translation="MDRVLHFVLALAVVAILALLVSSDRKKIRIRYVIQLLVIEVLLA WFFLNSDVGLGFVKGFSEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFIS ALIGILQHIRVLPVIIRAIGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGK ISRNRMYTMAATAMSTVSMSIVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVD ASEENIQMSNLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALIAALNALFATVTG WFGYSISFQGILGYIFYPIAWVMGVPSSEALQVGSIMATKLVSNEFVAMMDLQKIAST LSPRAEGIISVFLVSFANFSSIGIIAGAVKGLNEEQGNVVSRFGLKLVYGSTLVSVLS ASIAALVL" mobile_element 2514273..2515617 /mobile_element_type="insertion sequence:IS186C" gene 2514331..2515443 /gene="insL1" /locus_tag="b2394" /gene_synonym="ECK0016" /db_xref="EcoGene:EG40012" /db_xref="GeneID:946896" CDS 2514331..2515443 /gene="insL1" /locus_tag="b2394" /gene_synonym="ECK0016" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS186 transposase" /protein_id="NP_416895.2" /db_xref="GI:90111427" /db_xref="ASAP:ABE-0007897" /db_xref="UniProtKB/Swiss-Prot:P0CF93" /db_xref="EcoGene:EG40012" /db_xref="GeneID:946896" /translation="MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLL RLGLAYGPGGMSLREVTAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAVRAAV TGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRFA QTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGL DCGKNGETTVMIGNSGNKKAGAPFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQA ETLEAAGHVLLLTSLPEDEYSAEQVADCYRLRWQIELAFKRLKSLLHLDALRAKEPEL AKAWIFANLLAAFLIDDIIQPSLDFPPRSAGSEKKN" gene complement(2515643..2517832) /gene="yfeA" /locus_tag="b2395" /gene_synonym="ECK2389; JW5391" /db_xref="EcoGene:EG11145" /db_xref="GeneID:946864" CDS complement(2515643..2517832) /gene="yfeA" /locus_tag="b2395" /gene_synonym="ECK2389; JW5391" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase" /protein_id="NP_416896.4" /db_xref="GI:90111428" /db_xref="ASAP:ABE-0007899" /db_xref="UniProtKB/Swiss-Prot:P23842" /db_xref="EcoGene:EG11145" /db_xref="GeneID:946864" /translation="MFVEHNLIKNIKIFTLAFTLTVVLIQLSRFISPLAIIHSSYIFL AWMPLCVMLSILFIFGWRGVVPVLCGMFCTNLWNFHLSFLQTAVMLGSQTFVVLCACA ILRWQLGTRWRYGLTSRYVWQRLFWLGLVTPIGIKCSMYLVGSFFDFPLKISTFFGDA DAIFTVVDLLSLFTAVLIYNMLFYYLTRMIVSPHFAQILWRRDIAPSLGKEKRAFTLS WLAALSVLLLLLCTPYENDFIAGYLVPVFFIIFTLGVGKLRYPFLNLTWAVSTLCLLN YNQNFLQGVETEYSLAFILAVLISFSVCLLYMVRIYHRSEWLNRRWHLQALTDPLTLL PNFRALEQAPEQEAGKSFCCLRIDNLEFMSRHYGLMMRVHCIRSICRTLLPLMQENEK LYQLPGSELLLVLSGPETEGRLQHMVNILNSRQIHWNNTGLDMGYGAAWGRFDGNQET LQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQTTKQVLLLNTIRTALDQGDLLLYA QPIRNKEGEGYDEILARLKYDGGIMTPDKFLPLIAQFNLSARFDLQVLESLLKWLATH PCDKKGPRFSVNLMPLTLLQKNIAGRIIRLFKRYHISPQAVILEITEEQAFSNAESSM YNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADIIKIDGVFVKDIVTNTLDAMIVRS ITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGYLIGRPQPLAD" gene complement(2518041..2518116) /gene="alaX" /locus_tag="b2396" /gene_synonym="alaWbeta; ECK2390; JWR0046" /db_xref="EcoGene:EG30012" /db_xref="GeneID:946859" tRNA complement(2518041..2518116) /gene="alaX" /locus_tag="b2396" /gene_synonym="alaWbeta; ECK2390; JWR0046" /product="tRNA-Ala" /note="anticodon: GGC" /db_xref="ASAP:ABE-0007902" /db_xref="EcoGene:EG30012" /db_xref="GeneID:946859" gene complement(2518156..2518231) /gene="alaW" /locus_tag="b2397" /gene_synonym="alaWalpha; ECK2391; JWR0045" /db_xref="EcoGene:EG30011" /db_xref="GeneID:946860" tRNA complement(2518156..2518231) /gene="alaW" /locus_tag="b2397" /gene_synonym="alaWalpha; ECK2391; JWR0045" /product="tRNA-Ala" /note="anticodon: GGC" /db_xref="ASAP:ABE-0007904" /db_xref="EcoGene:EG30011" /db_xref="GeneID:946860" gene 2518467..2518811 /gene="yfeC" /locus_tag="b2398" /gene_synonym="ECK2392; JW2393" /db_xref="EcoGene:EG11431" /db_xref="GeneID:946857" CDS 2518467..2518811 /gene="yfeC" /locus_tag="b2398" /gene_synonym="ECK2392; JW2393" /codon_start=1 /transl_table=11 /product="DUF1323 family putative DNA-binding protein" /protein_id="NP_416897.2" /db_xref="GI:90111429" /db_xref="ASAP:ABE-0007907" /db_xref="UniProtKB/Swiss-Prot:P0AD37" /db_xref="EcoGene:EG11431" /db_xref="GeneID:946857" /translation="MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHV NEQVREYIRNAERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGII GLLQRLGIRDSK" gene 2518813..2519205 /gene="yfeD" /locus_tag="b2399" /gene_synonym="ECK2393; JW2394" /db_xref="EcoGene:EG11432" /db_xref="GeneID:946865" CDS 2518813..2519205 /gene="yfeD" /locus_tag="b2399" /gene_synonym="ECK2393; JW2394" /codon_start=1 /transl_table=11 /product="DUF1323 family putative DNA-binding protein" /protein_id="NP_416898.3" /db_xref="GI:226524736" /db_xref="ASAP:ABE-0007909" /db_xref="UniProtKB/Swiss-Prot:P27238" /db_xref="EcoGene:EG11432" /db_xref="GeneID:946865" /translation="MKRLRNKMTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGG RARLILVDTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTD IEQEKVAQFLSREGIRNFLARLDIDESA" gene complement(2519257..2520672) /gene="gltX" /locus_tag="b2400" /gene_synonym="ECK2394; JW2395" /db_xref="EcoGene:EG10407" /db_xref="GeneID:946906" CDS complement(2519257..2520672) /gene="gltX" /locus_tag="b2400" /gene_synonym="ECK2394; JW2395" /EC_number="6.1.1.17" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="glutamate tRNA synthetase, catalytic subunit" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA synthetase" /protein_id="NP_416899.1" /db_xref="GI:16130330" /db_xref="ASAP:ABE-0007911" /db_xref="UniProtKB/Swiss-Prot:P04805" /db_xref="EcoGene:EG10407" /db_xref="GeneID:946906" /translation="MKIKTRFAPSPTGYLHVGGARTALYSWLFARNHGGEFVLRIEDT DLERSTPEAIEAIMDGMNWLSLEWDEGPYYQTKRFDRYNAVIDQMLEEGTAYKCYCSK ERLEALREEQMAKGEKPRYDGRCRHSHEHHADDEPCVVRFANPQEGSVVFDDQIRGPI EFSNQELDDLIIRRTDGSPTYNFCVVVDDWDMEITHVIRGEDHINNTPRQINILKALK APVPVYAHVSMINGDDGKKLSKRHGAVSVMQYRDDGYLPEALLNYLVRLGWSHGDQEI FTREEMIKYFTLNAVSKSASAFNTDKLLWLNHHYINALPPEYVATHLQWHIEQENIDT RNGPQLADLVKLLGERCKTLKEMAQSCRYFYEDFAEFDADAAKKHLRPVARQPLEVVR DKLAAITDWTAENVHHAIQATADELEVGMGKVGMPLRVAVTGAGQSPALDVTVHAIGK TRSIERINKALDFIAERENQQ" gene 2520931..2521006 /gene="valU" /locus_tag="b2401" /gene_synonym="ECK2395; JWR0047; valUalpha" /db_xref="EcoGene:EG30110" /db_xref="GeneID:946824" tRNA 2520931..2521006 /gene="valU" /locus_tag="b2401" /gene_synonym="ECK2395; JWR0047; valUalpha" /product="tRNA-Val" /note="anticodon: UAC" /db_xref="ASAP:ABE-0007914" /db_xref="EcoGene:EG30110" /db_xref="GeneID:946824" gene 2521051..2521126 /gene="valX" /locus_tag="b2402" /gene_synonym="ECK2396; JWR0048; valUbeta" /db_xref="EcoGene:EG30113" /db_xref="GeneID:946817" tRNA 2521051..2521126 /gene="valX" /locus_tag="b2402" /gene_synonym="ECK2396; JWR0048; valUbeta" /product="tRNA-Val" /note="anticodon: UAC" /db_xref="ASAP:ABE-0007916" /db_xref="EcoGene:EG30113" /db_xref="GeneID:946817" gene 2521173..2521248 /gene="valY" /locus_tag="b2403" /gene_synonym="ECK2397; JWR0049; valUgamma" /db_xref="EcoGene:EG30114" /db_xref="GeneID:946870" tRNA 2521173..2521248 /gene="valY" /locus_tag="b2403" /gene_synonym="ECK2397; JWR0049; valUgamma" /product="tRNA-Val" /note="anticodon: UAC" /db_xref="ASAP:ABE-0007918" /db_xref="EcoGene:EG30114" /db_xref="GeneID:946870" gene 2521253..2521328 /gene="lysV" /locus_tag="b2404" /gene_synonym="ECK2398; JWR0050; supN" /db_xref="EcoGene:EG30056" /db_xref="GeneID:946866" tRNA 2521253..2521328 /gene="lysV" /locus_tag="b2404" /gene_synonym="ECK2398; JWR0050; supN" /product="tRNA-Lys" /note="anticodon: UUU" /db_xref="ASAP:ABE-0007920" /db_xref="EcoGene:EG30056" /db_xref="GeneID:946866" repeat_region 2521538..2521566 /note="REP173 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2521593..2522477) /gene="xapR" /locus_tag="b2405" /gene_synonym="ECK2399; JW2396; pRndR; yfeB" /db_xref="EcoGene:EG11146" /db_xref="GeneID:946862" CDS complement(2521593..2522477) /gene="xapR" /locus_tag="b2405" /gene_synonym="ECK2399; JW2396; pRndR; yfeB" /function="regulator; Central intermediary metabolism: Nucleotide interconversions" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion; GO:0006350 - transcription" /note="regulator for xapA" /codon_start=1 /transl_table=11 /product="transcriptional activator of xapAB" /protein_id="NP_416900.1" /db_xref="GI:16130331" /db_xref="ASAP:ABE-0007922" /db_xref="UniProtKB/Swiss-Prot:P23841" /db_xref="EcoGene:EG11146" /db_xref="GeneID:946862" /translation="MERVYRTDLKLLRYFLAVAEELHFGRAAARLNMSQPPLSIHIKE LENQLGTQLFIRHSRSVVLTHAGKILMEESRRLLVNANNVLARIEQIGRGEAGRIELG VVGTAMWGRMRPVMRRFLRENPNVDVLFREKMPAMQMALLERRELDAGIWRMATEPPT GFTSLRLHESAFLVAMPEEHHLSSFSTVPLEALRDEYFVTMPPVYTDWDFLQRVCQQV GFSPVVIREVNEPQTVLAMVSMGIGITLIADSYAQMNWPGVIFRPLKQRIPADLYIVY ETQQVTPAMVKLLAALTQ" gene complement(2522729..2523985) /gene="xapB" /locus_tag="b2406" /gene_synonym="ECK2400; JW2397" /db_xref="EcoGene:EG13159" /db_xref="GeneID:946868" CDS complement(2522729..2523985) /gene="xapB" /locus_tag="b2406" /gene_synonym="ECK2400; JW2397" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="xanthosine permease" /codon_start=1 /transl_table=11 /product="xanthosine transporter" /protein_id="NP_416901.1" /db_xref="GI:16130332" /db_xref="ASAP:ABE-0007925" /db_xref="UniProtKB/Swiss-Prot:P45562" /db_xref="EcoGene:EG13159" /db_xref="GeneID:946868" /translation="MSIAMRLKVMSFLQYFIWGSWLVTLGSYMINTLHFTGANVGMVY SSKGIAAIIMPGIMGIIADKWLRAERAYMLCHLVCAGVLFYAASVTDPDMMFWVMLVN AMAFMPTIALSNSVSYSCLAQAGLDPVTAFPPIRVFGTVGFIVAMWAVSLLHLELSSL QLYIASGASLLLSAYALTLPKIPVAEKKATTSLASKLGLDAFVLFKNPRMAIFFLFAM MLGAVLQITNVFGNPFLHDFARNPEFADSFVVKYPSILLSVSQMAEVGFILTIPFFLK RFGIKTVMLMSMVAWTLRFGFFAYGDPSTTGFILLLLSMIVYGCAFDFFNISGSVFVE QEVDSSIRASAQGLFMTMVNGVGAWVGSILSGMAVDYFSVDGVKDWQTIWLVFAGYAL FLAVIFFFGFKYNHDPEKIKHRAVTH" gene complement(2524045..2524878) /gene="xapA" /locus_tag="b2407" /gene_synonym="ECK2401; JW2398; pndA" /db_xref="EcoGene:EG20250" /db_xref="GeneID:946878" CDS complement(2524045..2524878) /gene="xapA" /locus_tag="b2407" /gene_synonym="ECK2401; JW2398; pndA" /EC_number="2.4.2.1" /function="enzyme; Central intermediary metabolism: Nucleotide interconversions" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /note="xanthosine phosphorylase" /codon_start=1 /transl_table=11 /product="purine nucleoside phosphorylase 2; nicotinamide 1-beta-D-riboside synthase" /protein_id="NP_416902.1" /db_xref="GI:16130333" /db_xref="ASAP:ABE-0007927" /db_xref="UniProtKB/Swiss-Prot:P45563" /db_xref="EcoGene:EG20250" /db_xref="GeneID:946878" /translation="MSQVQFSHNPLFCIDIIKTYKPDFTPRVAFILGSGLGALADQIE NAVAISYEKLPGFPVSTVHGHAGELVLGHLQGVPVVCMKGRGHFYEGRGMTIMTDAIR TFKLLGCELLFCTNAAGSLRPEVGAGSLVALKDHINTMPGTPMVGLNDDRFGERFFSL ANAYDAEYRALLQKVAKEEGFPLTEGVFVSYPGPNFETAAEIRMMQIIGGDVVGMSVV PEVISARHCDLKVVAVSAITNMAEGLSDVKLSHAQTLAAAELSKQNFINLICGFLRKI A" gene 2525127..2525891 /gene="yfeN" /locus_tag="b2408" /gene_synonym="ECK2402; JW2399" /db_xref="EcoGene:EG13160" /db_xref="GeneID:946872" CDS 2525127..2525891 /gene="yfeN" /locus_tag="b2408" /gene_synonym="ECK2402; JW2399" /function="putative enzyme; Not classified" /note="putative sugar hydrolase" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_416903.1" /db_xref="GI:16130334" /db_xref="ASAP:ABE-0007930" /db_xref="UniProtKB/Swiss-Prot:P45564" /db_xref="EcoGene:EG13160" /db_xref="GeneID:946872" /translation="MKKHLLTLTLSSILAIPVVSHAEFKGGFADIGVHYLDWTSRTTE KSSTKSHKDDFGYLEFEGGANFSWGEMYGFFDWENFYNGRHNKPGSEQRYTFKNTNRI YLGDTGFNLYLHAYGTYGSANRVNFHDDMFLYGIGYNFTGSGWWFKPFFAKRYTDQTY YTGDNGYVAGWVAGYNFMLGSEKFTLTNWNEYEFDRDATYAAGNGGKEGLNGAVALWW NATSHITTGIQYRYADDKLGEDFYQDAIIYSIKFNF" gene complement(2525930..2526856) /gene="yfeR" /locus_tag="b2409" /gene_synonym="ECK2403; JW2400; osmT" /db_xref="EcoGene:EG14159" /db_xref="GeneID:946873" CDS complement(2525930..2526856) /gene="yfeR" /locus_tag="b2409" /gene_synonym="ECK2403; JW2400; osmT" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="transcriptional regulator of yefH" /protein_id="NP_416904.1" /db_xref="GI:16130335" /db_xref="ASAP:ABE-0007932" /db_xref="UniProtKB/Swiss-Prot:P0ACR7" /db_xref="EcoGene:EG14159" /db_xref="GeneID:946873" /translation="MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENH TGVRLLDRTTREVVLTDAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQT ISAHLIPQCIAESHRRYPDIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCE AILSEPFFLLCHRDSALAVEDYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQAN IVQEIGHPATLFPMVAAGIGISILPALALPLPEGSPLVVKRITPVVERQLMLVRRKNR SLSTAAEALWDVVRDQGNALMAGREGDPLYQI" gene 2526946..2527944 /gene="yfeH" /locus_tag="b2410" /gene_synonym="ECK2404; JW5876" /db_xref="EcoGene:EG12376" /db_xref="GeneID:946874" CDS 2526946..2527944 /gene="yfeH" /locus_tag="b2410" /gene_synonym="ECK2404; JW5876" /function="putative enzyme; Not classified" /note="putative cytochrome oxidase" /codon_start=1 /transl_table=11 /product="putative inorganic ion transporter" /protein_id="NP_416905.1" /db_xref="GI:16130336" /db_xref="ASAP:ABE-0007936" /db_xref="UniProtKB/Swiss-Prot:P39836" /db_xref="EcoGene:EG12376" /db_xref="GeneID:946874" /translation="MKLFRILDPFTLTLITVVLLASFFPARGDFVPFFENLTTAAIAL LFFMHGAKLSREAIIAGGGHWRLHLWVMCSTFVLFPILGVLFAWWKPVNVDPMLYSGF LYLCILPATVQSAIAFTSMAGGNVAAAVCSASASSLLGIFLSPLLVGLVMNVHGAGGS LEQVGKIMLQLLLPFVLGHLSRPWIGDWVSRNKKWIAKTDQTSILLVVYTAFSEAVVN GIWHKVGWGSLLFIVVVSCVLLAIVIVVNVFMARRLSFNKADEITIVFCGSKKSLANG IPMANILFPTSVIGMMVLPLMIFHQIQLMVCAVLARRYKRQTEQLQAQQESSADKA" gene complement(2527941..2528159) /gene="ypeB" /locus_tag="b4546" /gene_synonym="ECK2405; JW5877" /db_xref="EcoGene:EG14366" /db_xref="GeneID:1450285" CDS complement(2527941..2528159) /gene="ypeB" /locus_tag="b4546" /gene_synonym="ECK2405; JW5877" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="DUF3820 family protein" /protein_id="YP_588464.1" /db_xref="GI:94541121" /db_xref="ASAP:ABE-0285067" /db_xref="UniProtKB/Swiss-Prot:P0AD40" /db_xref="EcoGene:EG14366" /db_xref="GeneID:1450285" /translation="MEKEQLIEIANTIMPFGKYKGRRLIDLPEEYLLWFARKDEFPAG KLGELMQITLLIKTEGLTQLVQPLKRPL" gene complement(2528161..2530176) /gene="ligA" /locus_tag="b2411" /gene_synonym="dnaL; ECK2406; JW2403; lig; lop; pdeC" /db_xref="EcoGene:EG10534" /db_xref="GeneID:946885" CDS complement(2528161..2530176) /gene="ligA" /locus_tag="b2411" /gene_synonym="dnaL; ECK2406; JW2403; lig; lop; pdeC" /EC_number="6.5.1.2" /function="enzyme; DNA - replication, repair, restriction/modification" /experiment="N-terminus verified by Edman degradation: PMID 3018436" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006281 - DNA repair" /note="DNA ligase" /codon_start=1 /transl_table=11 /product="DNA ligase, NAD(+)-dependent" /protein_id="NP_416906.1" /db_xref="GI:16130337" /db_xref="ASAP:ABE-0007938" /db_xref="UniProtKB/Swiss-Prot:P15042" /db_xref="EcoGene:EG10534" /db_xref="GeneID:946885" /translation="MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRE LETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL KNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLH GENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKR PLTFFCYGVGVLEGGELPDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEED RPTLGFDIDGVVIKVNSLAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRT GAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVL SERPEDTREVVFPTHCPVCGSDVERVEGEAVARCTGGLICGAQRKESLKHFVSRRAMD VDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTF ARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAE ESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVEL GAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGS" gene complement(2530247..2531233) /gene="zipA" /locus_tag="b2412" /gene_synonym="ECK2407; JW2404" /db_xref="EcoGene:EG14169" /db_xref="GeneID:946869" CDS complement(2530247..2531233) /gene="zipA" /locus_tag="b2412" /gene_synonym="ECK2407; JW2404" /function="membrane; Cell division" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="cell division protein involved in FtsZ ring" /codon_start=1 /transl_table=11 /product="FtsZ stabilizer" /protein_id="NP_416907.1" /db_xref="GI:16130338" /db_xref="ASAP:ABE-0007942" /db_xref="UniProtKB/Swiss-Prot:P77173" /db_xref="EcoGene:EG14169" /db_xref="GeneID:946869" /translation="MMQDLRLILIIVGAIAIIALLVHGFWTSRKERSSMFRDRPLKRM KSKRDDDSYDEDVEDDEGVGEVRVHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPR QPVQQPPEAQVPPQHAPHPAQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPA QQAFQPAEPVAAPQPEPVAEPAPVMDKPKRKEAVIIMNVAAHHGSELNGELLLNSIQQ AGFIFGDMNIYHRHLSPDGSGPALFSLANMVKPGTFDPEMKDFTTPGVTIFMQVPSYG DELQNFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDANA" gene 2531463..2532224 /gene="cysZ" /locus_tag="b2413" /gene_synonym="ECK2408; JW2406" /db_xref="EcoGene:EG10003" /db_xref="GeneID:946875" CDS 2531463..2532224 /gene="cysZ" /locus_tag="b2413" /gene_synonym="ECK2408; JW2406" /function="putative transport; Transport of small molecules: Anions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006790 - sulfur metabolic process" /note="required for sulfate transport" /codon_start=1 /transl_table=11 /product="sulfate transporter, sulfite inhibited" /protein_id="NP_416908.1" /db_xref="GI:16130339" /db_xref="ASAP:ABE-0007953" /db_xref="UniProtKB/Swiss-Prot:P0A6J3" /db_xref="EcoGene:EG10003" /db_xref="GeneID:946875" /translation="MVSSFTSAPRSGFYYFAQGWKLVSQPGIRRFVILPLLVNILLMG GAFWWLFTQLDVWIPTLMSYVPDWLQWLSYLLWPLAVISVLLVFGYFFSTIANWIAAP FNGLLAEQLEARLTGATPPDTGIFGIMKDVPRIMKREWQKFAWYLPRAIVLLILYFIP GIGQTVAPVLWFLFSAWMLAIQYCDYPFDNHKVPFKEMRTALRTRKITNMQFGALTSL FTMIPLLNLFIMPVAVCGATAMWVDCYRDKHAMWR" gene 2532409..2533380 /gene="cysK" /locus_tag="b2414" /gene_synonym="cysZ; ECK2409; JW2407" /db_xref="EcoGene:EG10192" /db_xref="GeneID:946877" CDS 2532409..2533380 /gene="cysK" /locus_tag="b2414" /gene_synonym="cysZ; ECK2409; JW2407" /EC_number="2.5.1.47" /function="enzyme; Amino acid biosynthesis: Cysteine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0019344 - cysteine biosynthetic process" /note="cysteine synthase A, O-acetylserine sulfhydrolase A" /codon_start=1 /transl_table=11 /product="cysteine synthase A, O-acetylserine sulfhydrolase A subunit" /protein_id="NP_416909.1" /db_xref="GI:16130340" /db_xref="ASAP:ABE-0007957" /db_xref="UniProtKB/Swiss-Prot:P0ABK5" /db_xref="EcoGene:EG10192" /db_xref="GeneID:946877" /translation="MSKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCR IGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRK LLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPE IWEDTDGQVDVFIAGVGTGGTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGE EIKPGPHKIQGIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGA AVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKELQQ" gene 2533764..2534021 /gene="ptsH" /locus_tag="b2415" /gene_synonym="ctr; ECK2410; hpr; iex?; JW2408" /db_xref="EcoGene:EG10788" /db_xref="GeneID:946886" CDS 2533764..2534021 /gene="ptsH" /locus_tag="b2415" /gene_synonym="ctr; ECK2410; hpr; iex?; JW2408" /function="enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols" /experiment="N-terminus verified by Edman degradation: PMID 9298646,9868784,10094700" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="PTS system protein HPr" /codon_start=1 /transl_table=11 /product="phosphohistidinoprotein-hexose phosphotransferase component of PTS system (Hpr)" /protein_id="NP_416910.1" /db_xref="GI:16130341" /db_xref="ASAP:ABE-0007962" /db_xref="UniProtKB/Swiss-Prot:P0AA04" /db_xref="EcoGene:EG10788" /db_xref="GeneID:946886" /translation="MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASA KSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE" gene 2534066..2535793 /gene="ptsI" /locus_tag="b2416" /gene_synonym="ctr; ECK2411; JW2409" /db_xref="EcoGene:EG10789" /db_xref="GeneID:946879" CDS 2534066..2535793 /gene="ptsI" /locus_tag="b2416" /gene_synonym="ctr; ECK2411; JW2409" /EC_number="2.7.3.9" /function="enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols" /experiment="N-terminus verified by Edman degradation: PMID 9298646" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="PEP-protein phosphotransferase system enzyme I" /codon_start=1 /transl_table=11 /product="PEP-protein phosphotransferase of PTS system (enzyme I)" /protein_id="NP_416911.1" /db_xref="GI:16130342" /db_xref="ASAP:ABE-0007967" /db_xref="UniProtKB/Swiss-Prot:P08839" /db_xref="EcoGene:EG10789" /db_xref="GeneID:946879" /translation="MISGILASPGIAFGKALLLKEDEIVIDRKKISADQVDQEVERFL SGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADA AAHEVIEGQASALEELDDEYLKERAADVRDIGKRLLRNILGLKIIDLSAIQDEVILVA ADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYL ILDAVNNQVYVNPTNEVIDKMRAVQEQVASEKAELAKLKDLPAITLDGHQVEVCANIG TVRDVEGAERNGAEGVGLYRTEFLFMDRDALPTEEEQFAAYKAVAEACGSQAVIVRTM DIGGDKELPYMNFPKEENPFLGWRAIRIAMDRREILRDQLRAILRASAFGKLRIMFPM IISVEEVRALRKEIEIYKQELRDEGKAFDESIEIGVMVETPAAATIARHLAKEVDFFS IGTNDLTQYTLAVDRGNDMISHLYQPMSPSVLNLIKQVIDASHAEGKWTGMCGELAGD ERATLLLLGMGLDEFSMSAISIPRIKKIIRNTNFEDAKVLAEQALAQPTTDELMTLVN KFIEEKTIC" gene 2535834..2536343 /gene="crr" /locus_tag="b2417" /gene_synonym="ECK2412; gsr; iex; JW2410; tgs; treD" /db_xref="EcoGene:EG10165" /db_xref="GeneID:946880" CDS 2535834..2536343 /gene="crr" /locus_tag="b2417" /gene_synonym="ECK2412; gsr; iex; JW2410; tgs; treD" /EC_number="2.7.1.69" /function="enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="PTS system, glucose-specific IIA component" /codon_start=1 /transl_table=11 /product="glucose-specific enzyme IIA component of PTS" /protein_id="NP_416912.1" /db_xref="GI:16130343" /db_xref="ASAP:ABE-0007971" /db_xref="UniProtKB/Swiss-Prot:P69783" /db_xref="EcoGene:EG10165" /db_xref="GeneID:946880" /translation="MGLFDKLKSLVSDDKKDTGTIEIIAPLSGEIVNIEDVPDVVFAE KIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE GFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVG ETPVIRIKK" gene complement(2536386..2537237) /gene="pdxK" /locus_tag="b2418" /gene_synonym="ECK2413; JW2411; pdxL; thiJ; yfeI" /db_xref="EcoGene:EG12642" /db_xref="GeneID:946881" CDS complement(2536386..2537237) /gene="pdxK" /locus_tag="b2418" /gene_synonym="ECK2413; JW2411; pdxL; thiJ; yfeI" /EC_number="2.7.1.35" /function="enzyme; Biosynthesis of cofactors, carriers: Pyridoxine" /note="pyridoxal/pyridoxine/pyridoxamine kinase" /codon_start=1 /transl_table=11 /product="pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase" /protein_id="NP_416913.1" /db_xref="GI:16130344" /db_xref="ASAP:ABE-0007973" /db_xref="UniProtKB/Swiss-Prot:P40191" /db_xref="EcoGene:EG12642" /db_xref="GeneID:946881" /translation="MSSLLLFNDKSRALQADIVAVQSQVVYGSVGNSIAVPAIKQNGL NVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQERDALRQLRAVTTGYMGTASQ IKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNI FELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVVTSASGNEENQEMQVVVVTADSVNV ISHSRVKTDLKGTGDLFCAQLISGLLKGKALTDAVHRAGLRVLEVMRYTQQHESDELI LPPLAEA" gene 2537342..2537716 /gene="yfeK" /locus_tag="b2419" /gene_synonym="ECK2414; JW2412" /db_xref="EcoGene:EG12644" /db_xref="GeneID:946876" CDS 2537342..2537716 /gene="yfeK" /locus_tag="b2419" /gene_synonym="ECK2414; JW2412" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416914.1" /db_xref="GI:16130345" /db_xref="ASAP:ABE-0007977" /db_xref="UniProtKB/Swiss-Prot:Q47702" /db_xref="EcoGene:EG12644" /db_xref="GeneID:946876" /translation="MKKIICLVITLLMTLPVYAKLTAHEEARINAMLEGLAQKKDLIF VRNGDEHTCYEAVSHLRLKLGNTRNRIDTAEQFIDKVASSSSITGKPYIVKIPGKSDE NAQPFLHALIAQTDKTVPAEGN" gene 2537749..2538483 /gene="yfeS" /locus_tag="b2420" /gene_synonym="ECK2415; JW2413" /db_xref="EcoGene:EG14160" /db_xref="GeneID:946887" CDS 2537749..2538483 /gene="yfeS" /locus_tag="b2420" /gene_synonym="ECK2415; JW2413" /codon_start=1 /transl_table=11 /product="WGR domain protein" /protein_id="NP_416915.1" /db_xref="GI:16130346" /db_xref="ASAP:ABE-0007979" /db_xref="UniProtKB/Swiss-Prot:P78271" /db_xref="EcoGene:EG14160" /db_xref="GeneID:946887" /translation="MKKRFIYHDEKSNKFWWIDYEGDSLAVNYGKVGSIGKFQTKEFD NEEQCLKEASKLIAAKMKKGYQEDPKFNFMDRYYFDDEEIGLHVKTSHPNFQCHFTDP LYMCCWDEESPFGSDEGADALNVLENSLRKEPDLDCADFPQMLIETMWGMKYIAMDSI LEEDVRAQLLVDEMSTIQSNMITYATAFGQIKVMGKISHKLKKMGLNALARHQLTAKI LQWGDGQDSPILQKMIDDLTAFPHEN" repeat_region 2538535..2538632 /note="RIP174 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(2538672..2539583) /gene="cysM" /locus_tag="b2421" /gene_synonym="ECK2416; JW2414" /db_xref="EcoGene:EG10193" /db_xref="GeneID:946888" CDS complement(2538672..2539583) /gene="cysM" /locus_tag="b2421" /gene_synonym="ECK2416; JW2414" /EC_number="2.5.1.47" /function="enzyme; Amino acid biosynthesis: Cysteine" /experiment="N-terminus verified by Edman degradation: PMID 8663055" /GO_process="GO:0019344 - cysteine biosynthetic process" /note="cysteine synthase B, O-acetylserine sulfhydrolase B" /codon_start=1 /transl_table=11 /product="cysteine synthase B (O-acetylserine sulfhydrolase B)" /protein_id="NP_416916.1" /db_xref="GI:16130347" /db_xref="ASAP:ABE-0007982" /db_xref="UniProtKB/Swiss-Prot:P16703" /db_xref="EcoGene:EG10193" /db_xref="GeneID:946888" /translation="MSTLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRA ALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA MRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQ QTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPTEYLP GIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKANPDAVVV AIICDRGDRYLSTGVFGEEHFSQGAGI" repeat_region 2539607..2539642 /note="REP175 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2539717..2540814) /gene="cysA" /locus_tag="b2422" /gene_synonym="ECK2417; JW2415" /db_xref="EcoGene:EG10183" /db_xref="GeneID:946889" CDS complement(2539717..2540814) /gene="cysA" /locus_tag="b2422" /gene_synonym="ECK2417; JW2415" /EC_number="3.6.3.25" /function="transport; Transport of small molecules: Anions" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0015419 - sulfate transmembrane-transporting ATPase activity" /GO_process="GO:0042493 - response to drug; GO:0006790 - sulfur metabolic process" /note="ATP-binding component of sulfate permease A protein; chromate resistance; ATP-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="sulfate/thiosulfate transporter subunit" /protein_id="NP_416917.1" /db_xref="GI:16130348" /db_xref="ASAP:ABE-0007986" /db_xref="UniProtKB/Swiss-Prot:P16676" /db_xref="EcoGene:EG10183" /db_xref="GeneID:946889" /translation="MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTL LRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVL PRRERPNAAAIKAKVTKLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEATEVADRVVVMSQGNIEQA DAPDQVWREPATRFVLEFMGEVNRLQGTIRGGQFHVGAHRWPLGYTPAYQGPVDLFLR PWEVDISRRTSLDSPLPVQVLEASPKGHYTQLVVQPLGWYNEPLTVVMHGDDAPQRGE RLFVGLQHARLYNGDERIETRDEELALAQSA" gene complement(2540804..2541679) /gene="cysW" /locus_tag="b2423" /gene_synonym="ECK2418; JW2416" /db_xref="EcoGene:EG10198" /db_xref="GeneID:2847743" CDS complement(2540804..2541679) /gene="cysW" /locus_tag="b2423" /gene_synonym="ECK2418; JW2416" /function="transport; Transport of small molecules: Anions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006790 - sulfur metabolic process" /note="sulfate transport system permease W protein; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="sulfate/thiosulfate ABC transporter permease" /protein_id="YP_026168.2" /db_xref="GI:90111430" /db_xref="ASAP:ABE-0007988" /db_xref="UniProtKB/Swiss-Prot:P0AEB0" /db_xref="EcoGene:EG10198" /db_xref="GeneID:2847743" /translation="MAEVTQLKRYDARPINWGKWFLIGIGMLVSAFILLVPMIYIFVQ AFSKGLMPVLQNLADPDMLHAIWLTVMIALIAVPVNLVFGILLAWLVTRFNFPGRQLL LTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQIMFSWPGMVLVTIFVTCPF VVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEF GAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRL ENQEKRAQQEEHHEH" gene complement(2541679..2542512) /gene="cysU" /locus_tag="b2424" /gene_synonym="cysT; ECK2419; JW2417" /db_xref="EcoGene:EG10197" /db_xref="GeneID:946882" CDS complement(2541679..2542512) /gene="cysU" /locus_tag="b2424" /gene_synonym="cysT; ECK2419; JW2417" /function="transport; Transport of small molecules: Anions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006790 - sulfur metabolic process" /note="sulfate, thiosulfate transport system permease T protein; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="sulfate/thiosulfate ABC transporter permease" /protein_id="NP_416919.1" /db_xref="GI:16130349" /db_xref="ASAP:ABE-0007990" /db_xref="UniProtKB/Swiss-Prot:P16701" /db_xref="EcoGene:EG10197" /db_xref="GeneID:946882" /translation="MFAVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSW AQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDL PFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQ PVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFI AGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRRVVG H" gene complement(2542512..2543528) /gene="cysP" /locus_tag="b2425" /gene_synonym="ECK2420; JW2418" /db_xref="EcoGene:EG10195" /db_xref="GeneID:946883" CDS complement(2542512..2543528) /gene="cysP" /locus_tag="b2425" /gene_synonym="ECK2420; JW2418" /function="transport; Transport of small molecules: Anions" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006790 - sulfur metabolic process" /note="thiosulfate binding protein; periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="thiosulfate-binding protein" /protein_id="NP_416920.1" /db_xref="GI:16130350" /db_xref="ASAP:ABE-0007992" /db_xref="UniProtKB/Swiss-Prot:P16700" /db_xref="EcoGene:EG10195" /db_xref="GeneID:946883" /translation="MAVNLLKKNSLALVASLLLAGHVQATELLNSSYDVSRELFAALN PPFEQQWAKDNGGDKLTIKQSHAGSSKQALAILQGLKADVVTYNQVTDVQILHDKGKL IPADWQSRLPNNSSPFYSTMGFLVRKGNPKNIHDWNDLVRSDVKLIFPNPKTSGNARY TYLAAWGAADKADGGDKGKTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFE SEVNNIRKQYEAQGFEVVIPKTNILAEFPVAWVDKNVQANGTEKAAKAYLNWLYSPQA QTIITDYYYRVNNPEVMDKLKDKFPQTELFRVEDKFGSWPEVMKTHFTSGGELDKLLA AGRN" gene complement(2543832..2544623) /gene="ucpA" /locus_tag="b2426" /gene_synonym="ECK2421; JW5394; yfeF" /db_xref="EcoGene:EG12133" /db_xref="GeneID:946898" CDS complement(2543832..2544623) /gene="ucpA" /locus_tag="b2426" /gene_synonym="ECK2421; JW5394; yfeF" /function="putative enzyme; Not classified" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="furfural resistance protein, putative short-chain oxidoreductase" /protein_id="NP_416921.4" /db_xref="GI:90111431" /db_xref="ASAP:ABE-0007996" /db_xref="UniProtKB/Swiss-Prot:P37440" /db_xref="EcoGene:EG12133" /db_xref="GeneID:946898" /translation="MGKLTGKTALITGALQGIGEGIARTFARHGANLILLDISPEIEK LADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMS DDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKA AIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPM RRLADPLEVGELAAFLASDESSYLTGTQNVIDGGSTLPETVSVGI" gene complement(2544752..2545609) /gene="murR" /locus_tag="b2427" /gene_synonym="ECK2422; JW2420; yfeT" /db_xref="EcoGene:EG14161" /db_xref="GeneID:946568" CDS complement(2544752..2545609) /gene="murR" /locus_tag="b2427" /gene_synonym="ECK2422; JW2420; yfeT" /codon_start=1 /transl_table=11 /product="repressor for murPQ, MurNAc 6-P inducible" /protein_id="NP_416922.1" /db_xref="GI:16130352" /db_xref="ASAP:ABE-0008000" /db_xref="UniProtKB/Swiss-Prot:P77245" /db_xref="EcoGene:EG14161" /db_xref="GeneID:946568" /translation="MLYLTKISNAGSEFTENEQKIADFLQANVSELQSVSSRQMAKQL GISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNATALHLHSSITSDDSLEVIA RKLNREKELALEQTCALLDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKI GYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSL TDSPLRRLAHFTLDTVSGETEWRSSSMSTRTAQNSVTDLLFVGLVQLNDVESLKMIQR SSELTQRLK" gene 2545773..2546669 /gene="murQ" /locus_tag="b2428" /gene_synonym="ECK2423; JW2421; yfeU" /db_xref="EcoGene:EG14162" /db_xref="GeneID:946893" CDS 2545773..2546669 /gene="murQ" /locus_tag="b2428" /gene_synonym="ECK2423; JW2421; yfeU" /function="putative regulator; Not classified" /note="putative regulator" /codon_start=1 /transl_table=11 /product="N-acetylmuramic acid 6-phosphate (MurNAc-6-P) etherase" /protein_id="NP_416923.1" /db_xref="GI:16130353" /db_xref="ASAP:ABE-0008007" /db_xref="UniProtKB/Swiss-Prot:P76535" /db_xref="EcoGene:EG14162" /db_xref="GeneID:946893" /translation="MQFEKMITEGSNTASAEIDRVSTLEMCRIINDEDKTVPLAVERV LPDIAAAIDVIHAQVSGGGRLIYLGAGTSGRLGILDASECPPTYGVKPGLVVGLIAGG EYAIQHAVEGAEDSREGGVNDLKNINLTAQDVVVGIAASGRTPYVIAGLEYARQLGCR TVGISCNPGSAVSTTAEFAITPIVGAEVVTGSSRMKAGTAQKLVLNMLSTGLMIKSGK VFGNLMVDVVATNEKLHVRQVNIVKNATGCSAEQAEAALIACERNCKTAIVMVLKNLD AAEAKKRLDQHGGFIRQVLDKE" gene 2546673..2548097 /gene="murP" /locus_tag="b2429" /gene_synonym="ECK2424; JW2422; yfeV" /db_xref="EcoGene:EG14163" /db_xref="GeneID:946894" CDS 2546673..2548097 /gene="murP" /locus_tag="b2429" /gene_synonym="ECK2424; JW2422; yfeV" /function="transport; Murein sacculus, peptidoglycan" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="N-acetylmuramic acid permease, EIIBC component, PTS system" /protein_id="NP_416924.1" /db_xref="GI:16130354" /db_xref="ASAP:ABE-0008009" /db_xref="UniProtKB/Swiss-Prot:P77272" /db_xref="EcoGene:EG14163" /db_xref="GeneID:946894" /translation="MAKEISSELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVD PNIKTLEGVKGVILTSDQVQVVFGPGKAHRAAKAMSELLGEAPVQDAAEIAAQNKRQL KAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLPDALN FMKVFSKGLFTFLVILVGYNAAQAFGGTGVNGAIIAALFLLGYNPAATTGYYAGFHDF FGLPIDPRGNIIGVLIAAWACARIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIM PLGGWLFEGMSWLFMHLNSNPFGCAVLAGLFLIAVVFGVHQGFIPVYLALMDSQGFNS LFPILSMAGAGQVGAALALYWRAQPHSALRSQVRGAIIPGLLGVGEPLIYGVTLPRMK PFVTACLGGAAGGLFIGLIAWWGLPMGLNSAFGPSGLVALPLMTSAQGILPAMAVYAG GILVAWVCGFIFTTLFGCRNVNLD" gene 2548102..2549406 /gene="yfeW" /locus_tag="b2430" /gene_synonym="ECK2425; JW5395; pbp4B" /db_xref="EcoGene:EG14164" /db_xref="GeneID:946907" CDS 2548102..2549406 /gene="yfeW" /locus_tag="b2430" /gene_synonym="ECK2425; JW5395; pbp4B" /function="enzyme; Murein sacculus, peptidoglycan" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="putative beta-lactamase" /codon_start=1 /transl_table=11 /product="penicillin binding protein PBP4B; weak DD-carboxypeptidase activity" /protein_id="NP_416925.2" /db_xref="GI:90111432" /db_xref="ASAP:ABE-0008012" /db_xref="UniProtKB/Swiss-Prot:P77619" /db_xref="EcoGene:EG14164" /db_xref="GeneID:946907" /translation="MKRTMLYLSLLAVSCSVSAAKYPVLTESSPEKAGFNVERLNQMD RWISQQVDVGYPSVNLLIIKDNQIVYRKAWGAAKKYDGSVLMEQPVKATTGTLYDLAS NTKMYATNFALQKLMSEGKLHPDDRIAKYIPGFADSPNDTIKGKNTLRISDLLHHSGG FPADPQYPNKAVAGALYSQDKGQTLEMIKRTPLEYQPGSKHIYSDVDYMLLGFIVESV TGQPLDRYVEESIYRPLGLTHTVFNPLLKGFKPQQIAATELNGNTRDGVIHFPNIRTS TLWGQVHDEKAFYSMGGVSGHAGLFSNTGDIAVLMQTMLNGGGYGDVQLFNAETVKMF TTSSKEDATFGLGWRVNGNATMTPTFGTLASPQTYGHTGWTGTVTVIDPVNHMTIVML SNKPHSPVADPQKNPNMFESGQLPIATYGWVVDQVYAALKQK" repeat_region 2549466..2549563 /note="RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(2549646..2550545) /gene="yfeX" /locus_tag="b2431" /gene_synonym="ECK2426; JW2424" /db_xref="EcoGene:EG14165" /db_xref="GeneID:946913" CDS complement(2549646..2550545) /gene="yfeX" /locus_tag="b2431" /gene_synonym="ECK2426; JW2424" /function="enzyme; Transport of small molecules: Cations" /codon_start=1 /transl_table=11 /product="porphyrinogen oxidase, cytoplasmic" /protein_id="NP_416926.4" /db_xref="GI:90111433" /db_xref="ASAP:ABE-0008015" /db_xref="UniProtKB/Swiss-Prot:P76536" /db_xref="EcoGene:EG14165" /db_xref="GeneID:946913" /translation="MSQVQSGILPEHCRAAIWIEANVKGEVDALRAASKTFADKLATF EAKFPDAHLGAVVAFGNNTWRALSGGVGAEELKDFPGYGKGLAPTTQFDVLIHILSLR HDVNFSVAQAAMEAFGDCIEVKEEIHGFRWVEERDLSGFVDGTENPAGEETRREVAVI KDGVDAGGSYVFVQRWEHNLKQLNRMSVHDQEMVIGRTKEANEEIDGDERPETSHLTR VDLKEDGKGLKIVRQSLPYGTASGTHGLYFCAYCARLHNIEQQLLSMFGDTDGKRDAM LRFTKPVTGGYYFAPSLDKLMAL" gene complement(2550641..2551216) /gene="yfeY" /locus_tag="b2432" /gene_synonym="ECK2427; JW2425" /db_xref="EcoGene:EG14166" /db_xref="GeneID:946919" CDS complement(2550641..2551216) /gene="yfeY" /locus_tag="b2432" /gene_synonym="ECK2427; JW2425" /codon_start=1 /transl_table=11 /product="RpoE-regulated lipoprotein" /protein_id="NP_416927.1" /db_xref="GI:16130357" /db_xref="ASAP:ABE-0008017" /db_xref="UniProtKB/Swiss-Prot:P76537" /db_xref="EcoGene:EG14166" /db_xref="GeneID:946919" /translation="MKSLRLMLCAMPLMLTGCSTMSSVNWSAANPWNWFGSSTKVSEQ GVGELTASTPLQEQAIADALDGDYRLRSGMKTANGNVVRFFEVMKGDNVAMVINGDQG TISRIDVLDSDIPADTGVKIGTPFSDLYSKAFGNCQKADGDDNRAVECKAEGSQHISY QFSGEWRGPEGLMPSDDTLKNWKVSKIIWRR" gene complement(2551277..2551726) /gene="yfeZ" /locus_tag="b2433" /gene_synonym="ECK2428; JW2426" /db_xref="EcoGene:EG14167" /db_xref="GeneID:946918" CDS complement(2551277..2551726) /gene="yfeZ" /locus_tag="b2433" /gene_synonym="ECK2428; JW2426" /codon_start=1 /transl_table=11 /product="inner membrane protein" /protein_id="NP_416928.4" /db_xref="GI:90111434" /db_xref="ASAP:ABE-0008023" /db_xref="UniProtKB/Swiss-Prot:P76538" /db_xref="EcoGene:EG14167" /db_xref="GeneID:946918" /translation="MKSTEFHPVHYDAHGRLRLPLLFWLVLLLQARTWVLFVIAGASR EQGTALLNLFYPDHDNFWLGLIPGIPAVLAFLLSGRRATFPRTWRVLYFLLLLAQVVL LCWQPWLWLNGESVSGIGLALVVADIVALIWLLTNRRLRACFYEVKE" gene complement(2551713..2552138) /gene="ypeA" /locus_tag="b2434" /gene_synonym="ECK2429; JW2427" /db_xref="EcoGene:EG14168" /db_xref="GeneID:946917" CDS complement(2551713..2552138) /gene="ypeA" /locus_tag="b2434" /gene_synonym="ECK2429; JW2427" /codon_start=1 /transl_table=11 /product="GNAT family putative N-acetyltransferase" /protein_id="NP_416929.4" /db_xref="GI:90111435" /db_xref="ASAP:ABE-0008028" /db_xref="UniProtKB/Swiss-Prot:P76539" /db_xref="EcoGene:EG14168" /db_xref="GeneID:946917" /translation="MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSL FLVAEVNGDVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPK IQINVPEDNDMVLGMYERLGYEHADVLSLGKRLIEDEEY" gene 2552352..2553221 /gene="amiA" /locus_tag="b2435" /gene_synonym="ECK2430; JW2428; yfeE" /db_xref="EcoGene:EG11823" /db_xref="GeneID:946916" CDS 2552352..2553221 /gene="amiA" /locus_tag="b2435" /gene_synonym="ECK2430; JW2428; yfeE" /EC_number="3.5.1.28" /function="enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-l-alanine amidase I" /protein_id="NP_416930.1" /db_xref="GI:16130360" /db_xref="ASAP:ABE-0008032" /db_xref="UniProtKB/Swiss-Prot:P36548" /db_xref="EcoGene:EG11823" /db_xref="GeneID:946916" /translation="MSTFKPLKTLTSRRQVLKAGLAALTLSGMSQAIAKDELLKTSNG HSKPKAKKSGGKRVVVLDPGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHGIDA RLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTNPKAAGASVFALSNRGASSAMA KYLSERENRADEVAGKKATDKDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPVHKL HSRNTEQAAFVVLKSPSVPSVLVETSFITNPEEERLLGTAAFRQKIATAIAEGVISYF HWFDNQKAHSKKR" gene 2553225..2554124 /gene="hemF" /locus_tag="b2436" /gene_synonym="ECK2431; JW2429; popB; sec" /db_xref="EcoGene:EG12189" /db_xref="GeneID:946908" CDS 2553225..2554124 /gene="hemF" /locus_tag="b2436" /gene_synonym="ECK2431; JW2429; popB; sec" /EC_number="1.3.3.3" /function="enzyme; Biosynthesis of cofactors, carriers: Heme, porphyrin" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="coproporphyrinogen III oxidase" /protein_id="NP_416931.1" /db_xref="GI:16130361" /db_xref="ASAP:ABE-0008034" /db_xref="UniProtKB/Swiss-Prot:P36553" /db_xref="EcoGene:EG12189" /db_xref="GeneID:946908" /translation="MKPDAHQVKQFLLNLQDTICQQLTAVDGAEFVEDSWQREAGGGG RSRVLRNGGVFEQAGVNFSHVHGEAMPASATAHRPELAGRSFEAMGVSLVVHPHNPYV PTSHANVRFFIAEKPGADPVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCLPFGEDVY PRYKKWCDEYFYLKHRNEQRGIGGLFFDDLNTPDFDRCFAFMQAVGKGYTDAYLPIVE RRKAMAYGERERNFQLYRRGRYVEFNLVWDRGTLFGLQTGGRTESILMSMPPLVRWEY DYQPKDGSPEAALSEFIKVRDWV" gene complement(2554130..2555182) /gene="eutR" /locus_tag="b2437" /gene_synonym="ECK2432; JW2430; yfeG" /db_xref="EcoGene:EG12190" /db_xref="GeneID:946911" CDS complement(2554130..2555182) /gene="eutR" /locus_tag="b2437" /gene_synonym="ECK2432; JW2430; yfeG" /function="regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0009310 - amine catabolic process; GO:0006350 - transcription" /note="putative ARAC-type regulatory protein" /codon_start=1 /transl_table=11 /product="eut operon transcriptional activator, AraC family" /protein_id="NP_416932.1" /db_xref="GI:16130362" /db_xref="ASAP:ABE-0008036" /db_xref="UniProtKB/Swiss-Prot:P36547" /db_xref="EcoGene:EG12190" /db_xref="GeneID:946911" /translation="MKKTRTANLHHLYHEPLPENLKLTPKVEVDNVHQRQTTDVYEHA LTITAWQQIYDQLHPGKFHGEFTEILLDDIQVFREYTGLALRQSCLVWPNSFWFGIPA TRGEQGFIGSQCLGSAEIATRPGGTEFELSTPDDYTILGVVLSEDVITRQANFLHNPD RVLHMLRNQSALEVKEQHKAALWGFVQQALATFCENPENLHQPAVRKVLGDNLLMAMG AMLEEAQPMVTAESISHQSYRRLLSRAREYVLENMSEPVTVLDLCNQLHVSRRTLQNA FHAILGIGPNAWLKRIRLNAVRRELISPWSQSMTVKDAAMQWGFWHLGQFATDYQQLF SEKPSLTLHQRMREWG" repeat_region 2555192..2555215 /note="REP177 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2555228..2555728) /gene="eutK" /locus_tag="b2438" /gene_synonym="ECK2433; JW2431; yffI" /db_xref="EcoGene:EG14170" /db_xref="GeneID:946912" CDS complement(2555228..2555728) /gene="eutK" /locus_tag="b2438" /gene_synonym="ECK2433; JW2431; yffI" /GO_process="GO:0009310 - amine catabolic process" /codon_start=1 /transl_table=11 /product="putative ethanol utilization carboxysome structural protein" /protein_id="NP_416933.4" /db_xref="GI:90111436" /db_xref="ASAP:ABE-0008039" /db_xref="UniProtKB/Swiss-Prot:P76540" /db_xref="EcoGene:EG14170" /db_xref="GeneID:946912" /translation="MINALGLLEVDGMVAAIDAADAMLKAANVRLLSHEVLDPGRLTL VVEGDLAACRAALDAGCAAAMRTGRVISRKEIGRPDDDTQWLVTGFNRQPKQPVREPD APVIVAESADELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKRSSR YRLKPH" gene complement(2555741..2556400) /gene="eutL" /locus_tag="b2439" /gene_synonym="ECK2434; JW2432; yffJ" /db_xref="EcoGene:EG14171" /db_xref="GeneID:946914" CDS complement(2555741..2556400) /gene="eutL" /locus_tag="b2439" /gene_synonym="ECK2434; JW2432; yffJ" /GO_process="GO:0009310 - amine catabolic process" /codon_start=1 /transl_table=11 /product="putative ethanol utilization carboxysome structural protein" /protein_id="NP_416934.1" /db_xref="GI:16130364" /db_xref="ASAP:ABE-0008041" /db_xref="UniProtKB/Swiss-Prot:P76541" /db_xref="EcoGene:EG14171" /db_xref="GeneID:946914" /translation="MPALDLIRPSVTAMRVIASVNADFARELKLPPHIRSLGLISADS DDVTYIAADEATKQAMVEVVYGRSLYAGAAHGPSPTAGEVLIMLGGPNPAEVRAGLDA MIAHIENGAAFQWANDAQDTAFLAHVVSRTGSYLSSTAGITLGDPMAYLVAPPLEATY GIDAALKSADVQLATYVPPPSETNYSAAFLTGSQAACKAACNAFTDAVLEIARNPIQR A" gene complement(2556410..2557297) /gene="eutC" /locus_tag="b2440" /gene_synonym="ECK2435; JW2433" /db_xref="EcoGene:EG50007" /db_xref="GeneID:946925" CDS complement(2556410..2557297) /gene="eutC" /locus_tag="b2440" /gene_synonym="ECK2435; JW2433" /EC_number="4.3.1.7" /function="enzyme; Degradation of small molecules: Amines" /experiment="N-terminus verified by Edman degradation: PMID 2197274" /GO_process="GO:0009310 - amine catabolic process" /note="ethanolamine ammonia-lyase, light chain" /codon_start=1 /transl_table=11 /product="ethanolamine ammonia-lyase, small subunit (light chain)" /protein_id="NP_416935.1" /db_xref="GI:16130365" /db_xref="ASAP:ABE-0008043" /db_xref="UniProtKB/Swiss-Prot:P19636" /db_xref="EcoGene:EG50007" /db_xref="GeneID:946925" /translation="MDQKQIEEIVRSVMASMGQAAPAPSEAKCATTNCAAPVTSESCA LDLGSAEAKAWIGVENPHRADVLTELRRSTVARVCTGRAGPRPRTQALLRFLADHSRS KDTVLKEVPEEWVKAQGLLEVRSEISDKNLYLTRPDMGRRLCAEAVEALKAQCVANPD VQVVISDGLSTDAITVNYEEILPPLMAGLKQAGLKVGTPFFVRYGRVKIEDQIGEILG AKVVILLVGERPGLGQSESLSCYAVYSPRMATTVEADRTCISNIHQGGTPPVEAAAVI VDLAKRMLEQKASGINMTR" gene complement(2557318..2558679) /gene="eutB" /locus_tag="b2441" /gene_synonym="ECK2436; JW2434" /db_xref="EcoGene:EG50006" /db_xref="GeneID:946924" CDS complement(2557318..2558679) /gene="eutB" /locus_tag="b2441" /gene_synonym="ECK2436; JW2434" /EC_number="4.3.1.7" /function="enzyme; Degradation of small molecules: Amines" /experiment="N-terminus verified by Edman degradation: PMID 2197274" /GO_process="GO:0009310 - amine catabolic process" /note="ethanolamine ammonia-lyase, heavy chain" /codon_start=1 /transl_table=11 /product="ethanolamine ammonia-lyase, large subunit, heavy chain" /protein_id="NP_416936.4" /db_xref="GI:90111437" /db_xref="ASAP:ABE-0008046" /db_xref="UniProtKB/Swiss-Prot:P0AEJ6" /db_xref="EcoGene:EG50006" /db_xref="GeneID:946924" /translation="MKLKTTLFGNVYQFKDVKEVLAKANELRSGDVLAGVAAASSQER VAAKQVLSEMTVADIRNNPVIAYEDDCVTRLIQDDVNETAYNQIKNWSISELREYVLS DETSVDDIAFTRKGLTSEVVAAVAKICSNADLIYGAKKMPVIKKANTTIGIPGTFSAR LQPNDTRDDVQSIAAQIYEGLSFGVGDAVIGVNPVTDDVENLSRVLDTIYGVIDKFNI PTQGCVLAHVTTQIEAIRRGAPGGLIFQSICGSEKGLKEFGVELAMLDEARAVGAEFN RIAGENCLYFETGQGSALSAGANFGADQVTMEARNYGLARHYDPFIVNTVVGFIGPEY LYNDRQIIRAGLEDHFMGKLSGISMGCDCCYTNHADADQNLNENLMILLATAGCNYIM GMPLGDDIMLNYQTTAFHDTATVRQLLNLRPSPEFERWLESMGIMANGRLTKRAGDPS LFF" misc_feature 2558699..2565461 /note="cryptic prophage Eut/CPZ-55" gene 2558858..2560066 /gene="intZ" /locus_tag="b2442" /gene_synonym="ECK2437" /db_xref="EcoGene:EG14172" /db_xref="GeneID:946923" CDS 2558858..2560066 /gene="intZ" /locus_tag="b2442" /gene_synonym="ECK2437" /function="Phage or Prophage Related" /note="putative prophage integrase" /codon_start=1 /transl_table=11 /product="CPZ-55 prophage; putative phage integrase" /protein_id="NP_416937.2" /db_xref="GI:145698295" /db_xref="ASAP:ABE-0008052" /db_xref="UniProtKB/Swiss-Prot:P76542" /db_xref="EcoGene:EG14172" /db_xref="GeneID:946923" /translation="MSKTPLTAKAIDAAQPQDKPYKLTDSLTPGLFLLVHPNGSKYWR FRYWLNKREFLQAIGVYPLITLKEARRRATESRSLIANGINPVEQARKEKAIDALNMA AGFKKVAEDWFATRVGGWSESYAKQVRSALEKDVYPVLGKRSIVDITARDVLALLQKK ERTAPEQARKLRRRIGEIFKFAVITELVTRNPVADLDTALKARRPGHNAWIPISEIPA FYKALERAGSVQIQTAIRLLILTALRTAELRLCRWEWINLEDATITLPAEVMKARRPH VVPLSRQAVELLQDQFTRSGYSAFVFPGRFMDKPLSASAILKALERIGYKSIATGHGW RTTFSTALNESGRYSPDWIEIQLAHVPKGIRGVYNQAAYLKQRRAMMQDYADAIDSIL AGNGNPLEPE" gene 2560257..2560898 /gene="yffL" /locus_tag="b2443" /gene_synonym="ECK2438" /db_xref="EcoGene:EG14173" /db_xref="GeneID:946922" CDS 2560257..2560898 /gene="yffL" /locus_tag="b2443" /gene_synonym="ECK2438" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CPZ-55 prophage; uncharacterized protein" /protein_id="NP_416938.1" /db_xref="GI:16130368" /db_xref="ASAP:ABE-0008055" /db_xref="UniProtKB/Swiss-Prot:P76543" /db_xref="EcoGene:EG14173" /db_xref="GeneID:946922" /translation="MFATKDPEFENRINTNKSPRNAATCRGRYEKQAKGEFLMSDMLA VEQETNNDVRQFLNKINELRNKAPKNEETKHEEHTPDNHEETDHHEAKQQEQAWRGNL RYLDTLNRLDEVLPRKLYERWEKEHTVNDEAVLRALCYFAGTGKNSQLGWCRVGRGTI DKRARLSKNTVKKCLDRLVNHFKLVERTEGYIPGSAERECNEYQLLFKPYNMK" gene 2561368..2561613 /gene="yffM" /locus_tag="b2444" /gene_synonym="ECK2439" /db_xref="EcoGene:EG14174" /db_xref="GeneID:946921" CDS 2561368..2561613 /gene="yffM" /locus_tag="b2444" /gene_synonym="ECK2439" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CPZ-55 prophage; uncharacterized protein" /protein_id="NP_416939.1" /db_xref="GI:16130369" /db_xref="ASAP:ABE-0008061" /db_xref="UniProtKB/Swiss-Prot:P76544" /db_xref="EcoGene:EG14174" /db_xref="GeneID:946921" /translation="MMVIRHECPSYCIAQKRVALREFSELVLGTLSLLLEQKTNGKCS ASLYDCSEEEKLFVKRLKLIKADIHAQLKACDCDISE" gene 2561625..2561993 /gene="yffN" /locus_tag="b2445" /gene_synonym="ECK2440" /db_xref="EcoGene:EG14175" /db_xref="GeneID:946930" CDS 2561625..2561993 /gene="yffN" /locus_tag="b2445" /gene_synonym="ECK2440" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CPZ-55 prophage; uncharacterized protein" /protein_id="NP_416940.2" /db_xref="GI:145698296" /db_xref="ASAP:ABE-0008063" /db_xref="UniProtKB/Swiss-Prot:P76545" /db_xref="EcoGene:EG14175" /db_xref="GeneID:946930" /translation="MKHVFKYLDFAEDREHAESVATKELKLDHVEKFAIRDLANDIKE RGCVELVQPGGFDELVQIYEAGGDGIEPLNCGIESRKVAIAALLRVMREPDFQCLEMV HEIIRIARDLEAPVDAPLDC" gene 2562111..2562527 /gene="yffO" /locus_tag="b2446" /gene_synonym="ECK2441" /db_xref="EcoGene:EG14176" /db_xref="GeneID:946929" CDS 2562111..2562527 /gene="yffO" /locus_tag="b2446" /gene_synonym="ECK2441" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CPZ-55 prophage; uncharacterized protein" /protein_id="NP_416941.1" /db_xref="GI:16130371" /db_xref="ASAP:ABE-0008066" /db_xref="UniProtKB/Swiss-Prot:P76546" /db_xref="EcoGene:EG14176" /db_xref="GeneID:946929" /translation="MEGELIENNGLDIYDTSETPKKRGRPAKYNEKIATQIVLLVSEG YSLRKISMMPGMPSHRQMMRWQLEHMDFREGIAWMSWLWCAEAGRRAVEIIDEVDINA EDGPKQLRKAEAKAKALLAAAKLNSLKHSPFGDDKQ" gene 2562524..2563117 /gene="yffP" /locus_tag="b2447" /gene_synonym="ECK2442" /db_xref="EcoGene:EG14177" /db_xref="GeneID:946928" CDS 2562524..2563117 /gene="yffP" /locus_tag="b2447" /gene_synonym="ECK2442" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CPZ-55 prophage; uncharacterized protein" /protein_id="NP_416942.1" /db_xref="GI:16130372" /db_xref="ASAP:ABE-0008069" /db_xref="UniProtKB/Swiss-Prot:P76547" /db_xref="EcoGene:EG14177" /db_xref="GeneID:946928" /translation="MSLIRTETRDTKRAADPLHDLRSKPFSEWGEDEIRRFNLIDALL EFVYTDTSSPFGIGMTFDYTECWEIGVRDDCLVMTRVKPVHPEYAKHWNMKGVMNDKT RFHADKWVGYSKVLAWVSLSHKDTFTGAKRFQYFQTMYDMERQINANLPVGGLPNVDT ERTGKLFQRDDFSEDSHANDPKLVGDDYVPQAPEQIN" gene 2563592..2563969 /gene="yffQ" /locus_tag="b2448" /gene_synonym="ECK2443" /db_xref="EcoGene:EG14178" /db_xref="GeneID:946927" CDS 2563592..2563969 /gene="yffQ" /locus_tag="b2448" /gene_synonym="ECK2443" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CPZ-55 prophage; uncharacterized protein" /protein_id="NP_416943.2" /db_xref="GI:145698297" /db_xref="ASAP:ABE-0008072" /db_xref="UniProtKB/Swiss-Prot:P76548" /db_xref="EcoGene:EG14178" /db_xref="GeneID:946927" /translation="MKLLIAIILMVLTGVCFADVGDYRLNGEDNARIESVVTDNCEKT AVLVGGDRLARVEIEYIATLCKPVALVIIYDRFDDIAAIPLKVTLKKVLKENSDEKIN LLNKMGDLAGRIVAEQYLGMSFE" gene 2563980..2564372 /gene="yffR" /locus_tag="b2449" /gene_synonym="ECK2444" /db_xref="EcoGene:EG14179" /db_xref="GeneID:946931" CDS 2563980..2564372 /gene="yffR" /locus_tag="b2449" /gene_synonym="ECK2444" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CPZ-55 prophage; uncharacterized protein" /protein_id="NP_416944.1" /db_xref="GI:16130374" /db_xref="ASAP:ABE-0008074" /db_xref="UniProtKB/Swiss-Prot:P76549" /db_xref="EcoGene:EG14179" /db_xref="GeneID:946931" /translation="MKVLGNILWWAFVGFMAYATLIKPDNTDPAVVNYEEPLPMELAN YGEPGEGAKIMNAAKIMGRDYAWKHVKEDRLPCLFAAGVVADNILVKYHFSNETEFKL KAAAVRECANVAENNGFVLVGRVFEKRN" gene 2564523..2565332 /gene="yffS" /locus_tag="b2450" /gene_synonym="ECK2445" /db_xref="EcoGene:EG14180" /db_xref="GeneID:946932" CDS 2564523..2565332 /gene="yffS" /locus_tag="b2450" /gene_synonym="ECK2445" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CPZ-55 prophage; uncharacterized protein" /protein_id="NP_416945.2" /db_xref="GI:145698298" /db_xref="ASAP:ABE-0008077" /db_xref="UniProtKB/Swiss-Prot:P76550" /db_xref="EcoGene:EG14180" /db_xref="GeneID:946932" /translation="MSYEIKICDILKGAAMEGQYKGAQRGAKCEEIANELTRRGVKNN KGEVITKGGVSHWLEGRREPNFDTLAELCDMFGVYALMPMRGGKWIRVHPEDRGEMEL REAVAERDAIIDDLKARIAELEAALANKQVPAEAEEMGGEKVEEVAAEQAPNDEKEMG AKEWVNPNPKKYSVGMLCQVLAAMGGEYLGNNAGLQQKITVLDNDGNRKPISNGAFYR LIEQAKGRGLISVEQEIKHKKDENGNQIGKGKKGDKLITLLPNWIDKLGDE" gene complement(2565481..2566884) /gene="eutA" /locus_tag="b2451" /gene_synonym="ECK2446; JW2435; yffT" /db_xref="EcoGene:EG14181" /db_xref="GeneID:946937" CDS complement(2565481..2566884) /gene="eutA" /locus_tag="b2451" /gene_synonym="ECK2446; JW2435; yffT" /codon_start=1 /transl_table=11 /product="reactivating factor for ethanolamine ammonia lyase" /protein_id="NP_416946.1" /db_xref="GI:16130376" /db_xref="ASAP:ABE-0008079" /db_xref="UniProtKB/Swiss-Prot:P76551" /db_xref="EcoGene:EG14181" /db_xref="GeneID:946937" /translation="MNTRQLLSVGIDIGTTTTQVIFSRLELVNRAAVSQVPRYEFIKR EISWQSPVFFTPVDKQGGLKEAELKTLILEQYHAAGIEPESVDSGAIIITGESAKTRN ARPAVMALSQSLGDFVVASAGPHLESVIAGHGAGAQTLSEQRLCRVLNIDIGGGTANY ALFDAGKISGTACLNVGGRLLETDSHGRVVYAHKPGQMIVDECFGAGTDARSLTGAQL VQVTRRMAELIVEVIDGTLSPLAQALMQTGLLPAGVTPEIITLSGGVGECYRHQPADP FCFADIGPLLATALHDHPRLREMNVQFPAQTVRATVIGAGAHTLSLSGSTIWLEGVQL PLRNLPVAIPIDETDLVGAWQQALIQLDLDPKTDAYVLALPASLPVRYAAVLTVINAL VDFVARFPNPHPLLVVAGQDFGKALGMLLRPQLQQLPLAVIDEVIVRAGDYIDIGTPL FGGSVVPVTVKSLAFPS" gene complement(2566881..2568107) /gene="eutH" /locus_tag="b2452" /gene_synonym="ECK2447; JW2436; yffU" /db_xref="EcoGene:EG14182" /db_xref="GeneID:944979" CDS complement(2566881..2568107) /gene="eutH" /locus_tag="b2452" /gene_synonym="ECK2447; JW2436; yffU" /function="putative transport; Degradation of small molecules: Amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009310 - amine catabolic process" /note="ethanolamine utilization; homolog of Salmonella putative transport protein" /codon_start=1 /transl_table=11 /product="ethanolamine transporter" /protein_id="NP_416947.1" /db_xref="GI:16130377" /db_xref="ASAP:ABE-0008081" /db_xref="UniProtKB/Swiss-Prot:P76552" /db_xref="EcoGene:EG14182" /db_xref="GeneID:944979" /translation="MGINEIIMYIMMFFMLIAAVDRILSQFGGSARFLGKFGKSIEGS GGQFEEGFMAMGALGLAMVGMTALAPVLAHVLGPVIIPVYEMLGANPSMFAGTLLACD MGGFFLAKELAGGDVAAWLYSGLILGSMMGPTIVFSIPVALGIIEPSDRRYLALGVLA GIVTIPIGCIAGGLVAMYSGVQINGQPVEFTFALILMNMIPVIIVAILVALGLKFIPE KMINGFQIFAKFLVALITLGLAAAVVKFLLGWELIPGLDPIFMAPGDKPGEVMRAIEV IGSISCVLLGAYPMVLLLTRWFEKPLMSVGKVLNMNNIAAAGMVATLANNIPMFGMMK QMDTRGKVINCAFAVSAAFALGDHLGFAAANMNAMIFPMIVGKLIGGVTAIGVAMMLV PKEDATATKTEAEAQS" repeat_region 2568139..2568321 /note="REP178 (repetitive extragenic palindromic) element; contains 4 REP sequences" gene complement(2568324..2569511) /gene="eutG" /locus_tag="b2453" /gene_synonym="ECK2448; JW2437; yffV" /db_xref="EcoGene:EG14183" /db_xref="GeneID:946233" CDS complement(2568324..2569511) /gene="eutG" /locus_tag="b2453" /gene_synonym="ECK2448; JW2437; yffV" /function="putative enzyme; Degradation of small molecules: Amines" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009310 - amine catabolic process" /note="ethanolamine utilization; homolog of Salmonella enzyme, similar to iron-containing alcohol dehydrogenase" /codon_start=1 /transl_table=11 /product="ethanol dehydrogenase involved in ethanolamine utilization; aldehyde reductase" /protein_id="NP_416948.4" /db_xref="GI:90111438" /db_xref="ASAP:ABE-0008087" /db_xref="UniProtKB/Swiss-Prot:P76553" /db_xref="EcoGene:EG14183" /db_xref="GeneID:946233" /translation="MQNELQTALFQAFDTLNLQRVKTFSVPPVTLCGPGSVSSCGQQA QTRGLKHLFVMADSFLHQAGMTAGLTRSLTVKGIAMTLWPCPVGEPCITDVCAAVAQL RESGCDGVIAFGGGSVLDAAKAVTLLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGT GSETTNVTVIIDAVSGRKQVLAHASLMPDVAILDAALTEGVPSHVTAMTGIDALTHAI EAYSALNATPFTDSLAIGAIAMIGKSLPKAVGYGHDLAARESMLLASCMAGMAFSSAG LGLCHAMAHQPGAALHIPHGLANAMLLPTVMEFNRMVCRERFSQIGRALRTKKSDDRD AINAVSELIAEVGIGKRLGDVGATSAHYGAWAQAALEDICLRSNPRTASLEQIVGLYA AAQ" gene complement(2569501..2570337) /gene="eutJ" /locus_tag="b2454" /gene_synonym="ECK2449; JW2438; yffW" /db_xref="EcoGene:EG14184" /db_xref="GeneID:947588" CDS complement(2569501..2570337) /gene="eutJ" /locus_tag="b2454" /gene_synonym="ECK2449; JW2438; yffW" /function="putative enzyme; Degradation of small molecules: Amines" /GO_process="GO:0009310 - amine catabolic process; GO:0006457 - protein folding" /note="ethanolamine utilization; homolog of Salmonella gene" /codon_start=1 /transl_table=11 /product="ethanolamine utilization protein, HSP70/actin superfamily protein" /protein_id="NP_416949.1" /db_xref="GI:16130379" /db_xref="ASAP:ABE-0008089" /db_xref="UniProtKB/Swiss-Prot:P77277" /db_xref="EcoGene:EG14184" /db_xref="GeneID:947588" /translation="MAHDEQWLTPRLQTAATLCNQTPAATESPLWLGVDLGTCDVVSM VVDRDGQPVAVCLDWADVVRDGIVWDFFGAVTIVRRHLDTLEQQFGRRFSHAATSFPP GTDPRISINVLESAGLEVSHVLDEPTAVADLLQLDNAGVVDIGGGTTGIAIVKKGKVT YSADEATGGHHISLTLAGNRRISLEEAEQYKRGHGEEIWPAVKPVYEKMADIVARHIE GQGITDLWLAGGSCMQPGVAELFRKQFPALQVHLPQHSLFMTPLAIASSGREKAEGLY AK" gene complement(2570348..2571751) /gene="eutE" /locus_tag="b2455" /gene_synonym="ECK2450; JW2439; yffX" /db_xref="EcoGene:EG14185" /db_xref="GeneID:946943" CDS complement(2570348..2571751) /gene="eutE" /locus_tag="b2455" /gene_synonym="ECK2450; JW2439; yffX" /function="putative enzyme; Degradation of small molecules: Amines" /GO_process="GO:0009310 - amine catabolic process" /note="ethanolamine utilization; similar to acetaldehyde dehydrogenase" /codon_start=1 /transl_table=11 /product="aldehyde oxidoreductase, ethanolamine utilization protein" /protein_id="NP_416950.1" /db_xref="GI:16130380" /db_xref="ASAP:ABE-0008091" /db_xref="UniProtKB/Swiss-Prot:P77445" /db_xref="EcoGene:EG14185" /db_xref="GeneID:946943" /translation="MNQQDIEQVVKAVLLKMQSSDTPSAAVHEMGVFASLDDAVAAAK VAQQGLKSVAMRQLAIAAIREAGEKHARDLAELAVSETGMGRVEDKFAKNVAQARGTP GVECLSPQVLTGDNGLTLIENAPWGVVASVTPSTNPAATVINNAISLIAAGNSVIFAP HPAAKKVSQRAITLLNQAIVAAGGPENLLVTVANPDIETAQRLFKFPGIGLLVVTGGE AVVEAARKHTNKRLIAAGAGNPPVVVDETADLARAAQSIVKGASFDNNIICADEKVLI VVDSVADELMRLMEGQHAVKLTAEQAQQLQPVLLKNIDERGKGTVSRDWVGRDAGKIA AAIGLKVPQETRLLFVETTAEHPFAVTELMMPVLPVVRVANVADAIALAVKLEGGCHH TAAMHSRNIENMNQMANAIDTSIFVKNGPCIAGLGLGGEGWTTMTITTPTGEGVTSAR TFVRLRRCVLVDAFRIV" gene complement(2571763..2572050) /gene="eutN" /locus_tag="b2456" /gene_synonym="cchB; ECK2451; JW2440; yffY" /db_xref="EcoGene:EG14186" /db_xref="GeneID:946945" CDS complement(2571763..2572050) /gene="eutN" /locus_tag="b2456" /gene_synonym="cchB; ECK2451; JW2440; yffY" /function="phenotype; Not classified" /GO_process="GO:0006805 - xenobiotic metabolic process" /note="detox protein" /codon_start=1 /transl_table=11 /product="Ethanolamine catabolic microcompartment shell protein" /protein_id="NP_416951.1" /db_xref="GI:16130381" /db_xref="ASAP:ABE-0008093" /db_xref="UniProtKB/Swiss-Prot:P0AEJ8" /db_xref="EcoGene:EG14186" /db_xref="GeneID:946945" /translation="MKLAVVTGQIVCTVRHHGLAHDKLLMVEMIDPQGNPDGQCAVAI DNIGAGTGEWVLLVSGSSARQAHKSETSPVDLCVIGIVDEVVSGGQVIFHK" gene complement(2572157..2572450) /gene="eutM" /locus_tag="b2457" /gene_synonym="cchA; ECK2452; JW2441; yffZ" /db_xref="EcoGene:EG14187" /db_xref="GeneID:946942" CDS complement(2572157..2572450) /gene="eutM" /locus_tag="b2457" /gene_synonym="cchA; ECK2452; JW2441; yffZ" /function="phenotype; Not classified" /GO_process="GO:0006805 - xenobiotic metabolic process" /note="detox protein" /codon_start=1 /transl_table=11 /product="ethanolamine utilization protein, putative carboxysome structural protein" /protein_id="NP_416952.2" /db_xref="GI:90111439" /db_xref="ASAP:ABE-0008095" /db_xref="UniProtKB/Swiss-Prot:P0ABF4" /db_xref="EcoGene:EG14187" /db_xref="GeneID:946942" /translation="MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAM VRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPIGLKGDSSNL" gene complement(2572489..2573505) /gene="eutD" /locus_tag="b2458" /gene_synonym="ECK2453; eutI; JW2442; ypfA" /db_xref="EcoGene:EG14188" /db_xref="GeneID:946940" CDS complement(2572489..2573505) /gene="eutD" /locus_tag="b2458" /gene_synonym="ECK2453; eutI; JW2442; ypfA" /function="putative enzyme; Degradation of small molecules: Amines" /GO_process="GO:0009310 - amine catabolic process" /note="ethanolamine utilization; homolog of Salmonella acetyl/butyryl P transferase" /codon_start=1 /transl_table=11 /product="phosphate acetyltransferase" /protein_id="NP_416953.1" /db_xref="GI:16130383" /db_xref="ASAP:ABE-0008097" /db_xref="UniProtKB/Swiss-Prot:P77218" /db_xref="EcoGene:EG14188" /db_xref="GeneID:946940" /translation="MIIERCRELALRAPARVVFPDALDQRVLKAAQYLHQQGLATPIL VANPFELRQFALSHGVAMDGLQVIDPHGNLAMREEFAHRWLARAGEKTPPDALEKLTD PLMFAAAMVSAGKADVCIAGNLSSTANVLRAGLRIIGLQPGCKTLSSIFLMLPQYSGP ALGFADCSVVPQPTAAQLADIALASAETWRAITGEEPRVAMLSFSSNGSARHPCVANV QQATEIVRERAPKLVVDGELQFDAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIG YKIAQRLGGYRAVGPLIQGLAAPMHDLSRGCSVQEIIELALVAAVPRQTEVNRESSLQ TLVE" gene complement(2573502..2574305) /gene="eutT" /locus_tag="b2459" /gene_synonym="ECK2454; JW2443; ypfB" /db_xref="EcoGene:EG14189" /db_xref="GeneID:946939" CDS complement(2573502..2574305) /gene="eutT" /locus_tag="b2459" /gene_synonym="ECK2454; JW2443; ypfB" /GO_process="GO:0009310 - amine catabolic process" /codon_start=1 /transl_table=11 /product="cobalamin adenosyltransferase involved in ethanolamine utilization" /protein_id="NP_416954.1" /db_xref="GI:16130384" /db_xref="ASAP:ABE-0008100" /db_xref="UniProtKB/Swiss-Prot:P65643" /db_xref="EcoGene:EG14189" /db_xref="GeneID:946939" /translation="MKDFITEAWLRANHTLSEGAEIHLPADSRLTPSARELLESRHLR IKFIDEQGRLFVDDEQQQPQPVHGLTSSDEHPQACCELCRQPVAKKPDTLTHLSAEKM VAKSDPRLGFRAVLDSTIALAVWLQIELAEPWQPWLADIRSRLGNIMRADALGEPLGC QAIVGLSDEDLHRLSHQPLRYLDHDHLVPEASHGRDAALLNLLRTKVRETETVAAQVF ITRSFEVLRPDILQALNRLSSTVYVMMILSVTKQPLTVKQIQQRLGETQ" gene complement(2574302..2575003) /gene="eutQ" /locus_tag="b2460" /gene_synonym="ECK2455; JW2444; ypfC" /db_xref="EcoGene:EG14190" /db_xref="GeneID:946935" CDS complement(2574302..2575003) /gene="eutQ" /locus_tag="b2460" /gene_synonym="ECK2455; JW2444; ypfC" /function="putative enzyme; Not classified" /GO_process="GO:0009310 - amine catabolic process" /codon_start=1 /transl_table=11 /product="RmlC-like cupin domain protein" /protein_id="NP_416955.1" /db_xref="GI:16130385" /db_xref="ASAP:ABE-0008102" /db_xref="UniProtKB/Swiss-Prot:P76555" /db_xref="EcoGene:EG14190" /db_xref="GeneID:946935" /translation="MKKLITANDIREAHARGEQAMSVVLRASIITPEAREVADLLGFT ITECDESIPVTASVPASVPADKTESQRIRETIIAQLPEGQFTESLVAQLMEKVMKEKQ SLEQGAMQPSFKSVTGKGGIKVIDGSSVKFGRFDGAEPHCVGLTDLVTGDDGSSMAAG FMQWENAFFPWTLNYDEIDMVLEGELHVRHEGQTMIAKAGDVMFIPKGSSIEFGTTSS VKFLYVAWPANWQSL" gene complement(2574978..2575457) /gene="eutP" /locus_tag="b2461" /gene_synonym="ECK2456; JW2445; ypfD" /db_xref="EcoGene:EG14191" /db_xref="GeneID:946933" CDS complement(2574978..2575457) /gene="eutP" /locus_tag="b2461" /gene_synonym="ECK2456; JW2445; ypfD" /GO_process="GO:0009310 - amine catabolic process" /codon_start=1 /transl_table=11 /product="putative P-loop NTPase ethanolamine utilization protein" /protein_id="NP_416956.1" /db_xref="GI:16130386" /db_xref="ASAP:ABE-0008105" /db_xref="UniProtKB/Swiss-Prot:P76556" /db_xref="EcoGene:EG14191" /db_xref="GeneID:946933" /translation="MKRIAFVGSVGAGKTTLFNALQGNYTLARKTQAVEFNDKGDIDT PGEYFNHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTD MPDADVAATRKLLLETGFEEPMFELNSHDPQSVQQLVDYLASLTKQEEAGEKTHHSE" gene complement(2575470..2575805) /gene="eutS" /locus_tag="b2462" /gene_synonym="ECK2457; JW2446; ypfE" /db_xref="EcoGene:EG14192" /db_xref="GeneID:946936" CDS complement(2575470..2575805) /gene="eutS" /locus_tag="b2462" /gene_synonym="ECK2457; JW2446; ypfE" /GO_process="GO:0009310 - amine catabolic process" /codon_start=1 /transl_table=11 /product="putative ethanol utilization carboxysome structural protein" /protein_id="NP_416957.4" /db_xref="GI:90111440" /db_xref="ASAP:ABE-0008108" /db_xref="UniProtKB/Swiss-Prot:P63746" /db_xref="EcoGene:EG14192" /db_xref="GeneID:946936" /translation="MDKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIM TLTPGETAMIAGDLALKAADVHIGFLDRFSGALVIYGSVGAVEEALSQTVSGLGRLLN YTLCEMTKS" gene complement(2576098..2578377) /gene="maeB" /locus_tag="b2463" /gene_synonym="ECK2458; JW2447; ypfF" /db_xref="EcoGene:EG14193" /db_xref="GeneID:946947" CDS complement(2576098..2578377) /gene="maeB" /locus_tag="b2463" /gene_synonym="ECK2458; JW2447; ypfF" /function="putative enzyme; Not classified" /note="putative multimodular enzyme" /codon_start=1 /transl_table=11 /product="malic enzyme: putative oxidoreductase/phosphotransacetylase" /protein_id="NP_416958.1" /db_xref="GI:16130388" /db_xref="ASAP:ABE-0008111" /db_xref="UniProtKB/Swiss-Prot:P76558" /db_xref="EcoGene:EG14193" /db_xref="GeneID:946947" /translation="MDDQLKQSALDFHEFPVPGKIQVSPTKPLATQRDLALAYSPGVA APCLEIEKDPLKAYKYTARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFKKFA GIDVFDIEVDELDPDKFIEVVAALEPTFGGINLEDIKAPECFYIEQKLRERMNIPVFH DDQHGTAIISTAAILNGLRVVEKNISDVRMVVSGAGAAAIACMNLLVALGLQKHNIVV CDSKGVIYQGREPNMAETKAAYAVVDDGKRTLDDVIEGADIFLGCSGPKVLTQEMVKK MARAPMILALANPEPEILPPLAKEVRPDAIICTGRSDYPNQVNNVLCFPFIFRGALDV GATAINEEMKLAAVRAIAELAHAEQSEVVASAYGDQDLSFGPEYIIPKPFDPRLIVKI APAVAKAAMESGVATRPIADFDVYIDKLTEFVYKTNLFMKPIFSQARKAPKRVVLPEG EEARVLHATQELVTLGLAKPILIGRPNVIEMRIQKLGLQIKAGVDFEIVNNESDPRFK EYWTEYFQIMKRRGVTQEQAQRALISNPTVIGAIMVQRGEADAMICGTVGDYHEHFSV VKNVFGYRDGVHTAGAMNALLLPSGNTFIADTYVNDEPDAEELAEITLMAAETVRRFG IEPRVALLSHSNFGSSDCPSSSKMRQALELVRERAPELMIDGEMHGDAALVEAIRNDR MPDSSLKGSANILVMPNMEAARISYNLLRVSSSEGVTVGPVLMGVAKPVHVLTPIASV RRIVNMVALAVVEAQTQPL" gene 2578666..2579616 /gene="talA" /locus_tag="b2464" /gene_synonym="ECK2459; JW2448" /db_xref="EcoGene:EG11797" /db_xref="GeneID:947006" CDS 2578666..2579616 /gene="talA" /locus_tag="b2464" /gene_synonym="ECK2459; JW2448" /EC_number="2.2.1.2" /function="enzyme; Central intermediary metabolism: Non-oxidative branch, pentose pathway" /GO_process="GO:0009052 - pentose-phosphate shunt, non-oxidative branch" /codon_start=1 /transl_table=11 /product="transaldolase A" /protein_id="NP_416959.1" /db_xref="GI:16130389" /db_xref="ASAP:ABE-0008115" /db_xref="UniProtKB/Swiss-Prot:P0A867" /db_xref="EcoGene:EG11797" /db_xref="GeneID:947006" /translation="MNELDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGL SQYEHLIDDAIAWGKKNGKTQEQQVVAACDKLAVNFGAEILKIVPGRVSTEVDARLSF DKEKSIEKARHLVDLYQQQGVEKSRILIKLASTWEGIRAAEELEKEGINCNLTLLFSF AQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHHYE TIVMGASFRRTEQILALTGCDRLTIAPNLLKELQEKVSPVVRKLIPPSQTFPRPAPMS EAEFRWEHNQDAMAVEKLSEGIRLFAVDQRKLEDLLAAKL" gene 2579636..2581639 /gene="tktB" /locus_tag="b2465" /gene_synonym="ECK2460; JW2449" /db_xref="EcoGene:EG12100" /db_xref="GeneID:945865" CDS 2579636..2581639 /gene="tktB" /locus_tag="b2465" /gene_synonym="ECK2460; JW2449" /EC_number="2.2.1.1" /function="enzyme; Central intermediary metabolism: Non-oxidative branch, pentose pathway" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0015949 - nucleobase, nucleoside and nucleotide interconversion; GO:0009052 - pentose-phosphate shunt, non-oxidative branch" /note="transketolase 2 isozyme" /codon_start=1 /transl_table=11 /product="transketolase 2, thiamine triphosphate-binding" /protein_id="NP_416960.1" /db_xref="GI:16130390" /db_xref="ASAP:ABE-0008117" /db_xref="UniProtKB/Swiss-Prot:P33570" /db_xref="EcoGene:EG12100" /db_xref="GeneID:945865" /translation="MSRKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFL KHNPTDPTWYDRDRFILSNGHASMLLYSLLHLTGYDLPLEELKNFRQLHSKTPGHPEI GYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNQPDHEIVDHFTYVFMGDGCLMEG ISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGH DPQAVKEAILEAQSVKDKPSLIICRTVIGFGSPNKAGKEEAHGAPLGEEEVALARQKL GWHHPPFEIPKEIYHAWDAREKGEKAQQSWNEKFAAYKKAHPQLAEEFTRRMSGGLPK DWEKTTQKYINELQANPAKIATRKASQNTLNAYGPMLPELLGGSADLAPSNLTIWKGS VSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALM KARQIMVYTHDSIGLGEDGPTHQAVEQLASLRLTPNFSTWRPCDQVEAAVGWKLAVER HNGPTALILSRQNLAQVERTPDQVKEIARGGYVLKDSGGKPDIILIATGSEMEITLQA AEKLAGEGRNVRVVSLPSTDIFDAQDEEYRESVLPSNVAARVAVEAGIADYWYKYVGL KGAIVGMTGYGESAPADKLFPFFGFTAENIVAKAHKVLGVKGA" repeat_region 2581648..2581716 /note="REP179 (repetitive extragenic palindromic) element; contains 3 REP sequences" gene complement(2581734..2582777) /gene="ypfG" /locus_tag="b2466" /gene_synonym="ECK2461; JW2450" /db_xref="EcoGene:EG14194" /db_xref="GeneID:946828" CDS complement(2581734..2582777) /gene="ypfG" /locus_tag="b2466" /gene_synonym="ECK2461; JW2450" /codon_start=1 /transl_table=11 /product="DUF1176 family protein" /protein_id="NP_416961.1" /db_xref="GI:16130391" /db_xref="ASAP:ABE-0008120" /db_xref="UniProtKB/Swiss-Prot:P76559" /db_xref="EcoGene:EG14194" /db_xref="GeneID:946828" /translation="MRYRIFLLFFFALLPTSLVWAAPAQRAFSDWQVTCNNQNFCVAR NTGDHNGLVMTLSRSAGAHTDAVLRIERGGLKSPEASEGEIAPRLLLDGEPLALSGDK WRISPWLLVTDDTATITAFLQMIQEGKAITLRDGDQTISLSGLKAALLFIDAQQKRVG SETAWIKKGDEPPLSVPPAPALKEVAVVNPTPTPLSLEERNDLLDYGNWRMNGLRCSL DPLRREVNVTALTDDKALMMISCEAGAYNTIDLAWIVSRKKPLASRPVRLRLPFNNGQ ETNELELMNATFDEKSRELVTLAKGRGLSDCGIQARWRFDGQRFRLVRYAAEPTCDNW HGPDAWPTLWITR" gene complement(2582903..2583478) /gene="nudK" /locus_tag="b2467" /gene_synonym="ECK2462; JW2451; yffH" /db_xref="EcoGene:EG12410" /db_xref="GeneID:947072" CDS complement(2582903..2583478) /gene="nudK" /locus_tag="b2467" /gene_synonym="ECK2462; JW2451; yffH" /codon_start=1 /transl_table=11 /product="GDP-mannose pyrophosphatase" /protein_id="NP_416962.1" /db_xref="GI:16130392" /db_xref="ASAP:ABE-0008123" /db_xref="UniProtKB/Swiss-Prot:P37128" /db_xref="EcoGene:EG12410" /db_xref="GeneID:947072" /translation="MTQQITLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDR GNGATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAI EETGYEVGEVRKLFELYMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPF SQALEMIKTGEIRDGKTVLLLNYLQTSHLMD" gene complement(2583546..2585525) /gene="aegA" /locus_tag="b2468" /gene_synonym="ECK2463; JW2452; yffG" /db_xref="EcoGene:EG12409" /db_xref="GeneID:947383" CDS complement(2583546..2585525) /gene="aegA" /locus_tag="b2468" /gene_synonym="ECK2463; JW2452; yffG" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative oxidoreductase, FeS binding subunit/NAD/FAD-binding subunit" /protein_id="NP_416963.1" /db_xref="GI:16130393" /db_xref="ASAP:ABE-0008127" /db_xref="UniProtKB/Swiss-Prot:P37127" /db_xref="EcoGene:EG12409" /db_xref="GeneID:947383" /translation="MNRFIMANSQQCLGCHACEIACVMAHNDEQHVLSQHHFHPRITV IKHQQQRSAVTCHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTM QIVLTPVAAGKVKATAHKCDLCAGRENGPACVENCPADALQLVTDVALSGMAKSRRLR TARQEHQPWHASTAAQEMPVMSKVEQMQATPARGEPDKLAIEARKTGFDEIYLPFRAD QAQREASRCLKCGEHSVCEWTCPLHNHIPQWIELVKAGNIDAAVELSHQTNTLPEITG RVCPQDRLCEGACTIRDEHGAVTIGNIERYISDQALAKGWRPDLSHVTKVDKRVAIIG AGPAGLACADVLTRNGVGVTVYDRHPEIGGLLTFGIPSFKLDKSLLARRREIFSAMGI HFELNCEVGKDVSLDSLLEQYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTK QVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG SKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPVEG SEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTTNPKIFAGG DAVRGADLVVTAMAEGRHAAQGIIDWLGVKSVKSH" gene 2585731..2587431 /gene="narQ" /locus_tag="b2469" /gene_synonym="ECK2464; JW2453" /db_xref="EcoGene:EG11460" /db_xref="GeneID:946948" CDS 2585731..2587431 /gene="narQ" /locus_tag="b2469" /gene_synonym="ECK2464; JW2453" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration; GO:0006464 - protein modification process" /note="sensor for nitrate reductase system, protein histidine kinase (acts on NarP and narL)" /codon_start=1 /transl_table=11 /product="sensory histidine kinase in two-component regulatory system with NarP" /protein_id="NP_416964.1" /db_xref="GI:16130394" /db_xref="ASAP:ABE-0008132" /db_xref="UniProtKB/Swiss-Prot:P27896" /db_xref="EcoGene:EG11460" /db_xref="GeneID:946948" /translation="MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAIN IAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHL NANWLEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIG IFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTNLPNELGLLAKTFNQM SSELHKLYRSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRD NEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLN SVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP EDNATAQSIMADFSQALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAK LTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD NGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQLM " gene 2587595..2590708 /gene="acrD" /locus_tag="b2470" /gene_synonym="ECK2465; JW2454; yffA" /db_xref="EcoGene:EG10014" /db_xref="GeneID:945464" CDS 2587595..2590708 /gene="acrD" /locus_tag="b2470" /gene_synonym="ECK2465; JW2454; yffA" /function="putative transport; Drug/analog sensitivity" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042493 - response to drug" /codon_start=1 /transl_table=11 /product="aminoglycoside/multidrug efflux system" /protein_id="NP_416965.1" /db_xref="GI:16130395" /db_xref="ASAP:ABE-0008136" /db_xref="UniProtKB/Swiss-Prot:P24177" /db_xref="EcoGene:EG10014" /db_xref="GeneID:945464" /translation="MANFFIDRPIFAWVLAILLCLTGTLAIFSLPVEQYPDLAPPNVR VTANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDE AVQQVQNQLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVAS NIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQ LGGTPSVDKQALNATINAQSLLQTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKYD YLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVK ASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNT LTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLS AVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQ KGFFAWFNQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLE DRGMFTTSVQLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVA RMFIRLKDWSERDSKTGTSFAIIERATKAFNQIKEARVIASSPPAISGLGSSAGFDME LQDHAGAGHDALMAARNQLLALAAENPELTRVRHNGLDDSPQLQIDIDQRKAQALGVA IDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAPYRMLPDDINLWYVRNKDGGMVP FSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAMDIMESLVKQLPNGFGLE WTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLAT WMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKGHDLFEATLHACRQRLRPI LMTSLAFIFGVLPMATSTGAGSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRF PLKPRPE" gene complement(2590807..2590866) /gene="ypfM" /locus_tag="b4606" /gene_synonym="ECK4415" /db_xref="EcoGene:EG14396" /db_xref="GeneID:5061513" CDS complement(2590807..2590866) /gene="ypfM" /locus_tag="b4606" /gene_synonym="ECK4415" /codon_start=1 /transl_table=11 /product="stress-induced small enterobacterial protein" /protein_id="YP_001165325.1" /db_xref="GI:145698299" /db_xref="UniProtKB/Swiss-Prot:A5A621" /db_xref="EcoGene:EG14396" /db_xref="GeneID:5061513" /translation="MIERELGNWKDFIEVMLRK" gene 2591247..2591603 /gene="yffB" /locus_tag="b2471" /gene_synonym="ECK2466; JW2455" /db_xref="EcoGene:EG11147" /db_xref="GeneID:946953" CDS 2591247..2591603 /gene="yffB" /locus_tag="b2471" /gene_synonym="ECK2466; JW2455" /codon_start=1 /transl_table=11 /product="putative ArsC family reductase" /protein_id="NP_416966.1" /db_xref="GI:16130396" /db_xref="ASAP:ABE-0008140" /db_xref="UniProtKB/Swiss-Prot:P24178" /db_xref="EcoGene:EG11147" /db_xref="GeneID:946953" /translation="MVTLYGIKNCDTIKKARRWLEANNIDYRFHDYRVDGLDSELLND FINELGWEALLNTRGTTWRKLDETTRNKITDAASAAALMTEMPAIIKRPLLCVPGKPM LLGFSDSSYQQFFHEV" gene 2591607..2592734 /gene="dapE" /locus_tag="b2472" /gene_synonym="ECK2467; JW2456; msgB" /db_xref="EcoGene:EG10208" /db_xref="GeneID:948313" CDS 2591607..2592734 /gene="dapE" /locus_tag="b2472" /gene_synonym="ECK2467; JW2456; msgB" /EC_number="3.5.1.18" /function="enzyme; Amino acid biosynthesis: Lysine" /GO_process="GO:0009089 - lysine biosynthetic process via diaminopimelate" /codon_start=1 /transl_table=11 /product="N-succinyl-diaminopimelate deacylase" /protein_id="NP_416967.1" /db_xref="GI:16130397" /db_xref="ASAP:ABE-0008142" /db_xref="UniProtKB/Swiss-Prot:P0AED7" /db_xref="EcoGene:EG10208" /db_xref="GeneID:948313" /translation="MSCPVIELTQQLIRRPSLSPDDAGCQALLIERLQAIGFTVERMD FADTQNFWAWRGQGETLAFAGHTDVVPPGDADRWINPPFEPTIRDGMLFGRGAADMKG SLAAMVVAAERFVAQHPNHTGRLAFLITSDEEASAHNGTVKVVEALMARNERLDYCLV GEPSSIEVVGDVVKNGRRGSLTCNLTIHGVQGHVAYPHLADNPVHRAAPFLNELVAIE WDQGNEFFPATSMQIANIQAGTGSNNVIPGELFVQFNFRFSTELTDEMIKAQVLALLE KHQLRYTVDWWLSGQPFLTARGKLVDAVVNAVEHYNEIKPQLLTTGGTSDGRFIARMG AQVVELGPVNATIHKINECVNAADLQLLARMYQRIMEQLVA" gene 2592762..2592962 /gene="ypfN" /locus_tag="b4547" /gene_synonym="ECK2468; JW2457" /db_xref="EcoGene:EG14399" /db_xref="GeneID:1450286" CDS 2592762..2592962 /gene="ypfN" /locus_tag="b4547" /gene_synonym="ECK2468; JW2457" /GO_component="GO:0031225 - anchored to membrane" /codon_start=1 /transl_table=11 /product="putative membrane protein, UPF0370 family" /protein_id="YP_588465.1" /db_xref="GI:94541122" /db_xref="ASAP:ABE-0285068" /db_xref="UniProtKB/Swiss-Prot:Q2EET2" /db_xref="EcoGene:EG14399" /db_xref="GeneID:1450286" /translation="MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPP HRDFNDKWDDDDDWPKKDQPKK" repeat_region 2592978..2593060 /note="REP180 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(2593072..2593770) /gene="ypfH" /locus_tag="b2473" /gene_synonym="ECK2469; JW5396" /db_xref="EcoGene:EG14195" /db_xref="GeneID:947571" CDS complement(2593072..2593770) /gene="ypfH" /locus_tag="b2473" /gene_synonym="ECK2469; JW5396" /codon_start=1 /transl_table=11 /product="palmitoyl-CoA esterase activity, uncertain physiological substrate" /protein_id="NP_416968.2" /db_xref="GI:90111441" /db_xref="ASAP:ABE-0008145" /db_xref="UniProtKB/Swiss-Prot:P76561" /db_xref="EcoGene:EG14195" /db_xref="GeneID:947571" /translation="MKHDHFVVQSPDKPAQQLLLLFHGVGDNPVAMGEIGNWFAPLFP DALVVSVGGAEPSGNPAGRQWFSVQGITEDNRQARVDAIMPTFIETVRYWQKQSGVGA NATALIGFSQGAIMVLESIKAEPGLASRVIAFNGRYASLPETASTATTIHLIHGGEDP VIDLAHAVAAQEALISAGGDVTLDIVEDLGHAIDNRSMQFALDHLRYTIPKHYFDEAL SGGKPGDDDVIEMM" gene complement(2593844..2595859) /gene="tmcA" /locus_tag="b2474" /gene_synonym="ECK2470; JW2459; ypfI" /db_xref="EcoGene:EG14196" /db_xref="GeneID:946053" CDS complement(2593844..2595859) /gene="tmcA" /locus_tag="b2474" /gene_synonym="ECK2470; JW2459; ypfI" /function="enzyme; tRNA modification" /codon_start=1 /transl_table=11 /product="elongator methionine tRNA (ac4C34) acetyltransferase" /protein_id="NP_416969.1" /db_xref="GI:16130399" /db_xref="ASAP:ABE-0008150" /db_xref="UniProtKB/Swiss-Prot:P76562" /db_xref="EcoGene:EG14196" /db_xref="GeneID:946053" /translation="MAELTALHTLTAQMKREGIRRLLVLSGEEGWCFEHTLKLRDALP GDWLWISPRPDAENHCSPSALQTLLGREFRHAVFDARHGFDAAAFAALSGTLKAGSWL VLLLPVWEEWENQPDADSLRWSDCPDPIATPHFVQHLKRVLTADNEAILWRQNQPFSL AHFTPRTDWYPATGAPQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAG RAIVTAPAKASTDVLAQFAGEKFRFIAPDALLASDEQADWLVVDEAAAIPAPLLHQLV SRFPRTLLTTTVQGYEGTGRGFLLKFCARFPHLHRFELQQPIRWAQGCPLEKMVSEAL VFDDENFTHTPQGNIVISAFEQTLWQSDPETPLKVYQLLSGAHYRTSPLDLRRMMDAP GQHFLQAAGENEIAGALWLVDEGGLSQQLSQAVWAGFRRPRGNLVAQSLAAHGNNPLA ATLRGRRVSRIAVHPARQREGTGRQLIAGALQYTQDLDYLSVSFGYTGELWRFWQRCG FVLVRMGNHREASSGCYTAMALLPMSDAGKQLAEREHYRLRRDAQALAQWNGETLPVD PLNDAVLSDDDWLELAGFAFAHRPLLTSLGCLLRLLQTSELALPALRGRLQKNASDAQ LCTTLKLSGRKMLLVRQREEAAQALFALNDVRTERLRDRITQWQLFH" gene complement(2595874..2596737) /gene="ypfJ" /locus_tag="b2475" /gene_synonym="ECK2471; JW2460" /db_xref="EcoGene:EG14197" /db_xref="GeneID:946956" CDS complement(2595874..2596737) /gene="ypfJ" /locus_tag="b2475" /gene_synonym="ECK2471; JW2460" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative neutral zinc metallopeptidase" /protein_id="NP_416970.1" /db_xref="GI:16130400" /db_xref="ASAP:ABE-0008153" /db_xref="UniProtKB/Swiss-Prot:P64429" /db_xref="EcoGene:EG14197" /db_xref="GeneID:946956" /translation="MRWQGRRESDNVEDRRNSSGGPSMGGPGFRLPSGKGGLILLIVV LVAGYYGVDLTGLMTGQPVSQQQSTRSISPNEDEAAKFTSVILATTEDTWGQQFEKMG KTYQQPKLVMYRGMTRTGCGAGQSIMGPFYCPADGTVYIDLSFYDDMKDKLGADGDFA QGYVIAHEVGHHVQKLLGIEPKVRQLQQNATQAEVNRLSVRMELQADCFAGVWGHSMQ QQGVLETGDLEEALNAAQAIGDDRLQQQSQGRVVPDSFTHGTSQQRYSWFKRGFDSGD PAQCNTFGKSI" gene complement(2596905..2597618) /gene="purC" /locus_tag="b2476" /gene_synonym="ade; ECK2472; JW2461" /db_xref="EcoGene:EG10791" /db_xref="GeneID:946957" CDS complement(2596905..2597618) /gene="purC" /locus_tag="b2476" /gene_synonym="ade; ECK2472; JW2461" /EC_number="6.3.2.6" /function="enzyme; Purine ribonucleotide biosynthesis" /experiment="N-terminus verified by Edman degradation: PMID 2120198,9298646" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006164 - purine nucleotide biosynthetic process" /note="phosphoribosylaminoimidazole-succinocarboxamide synthetase = SAICAR synthetase" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole-succinocarboxamide synthetase" /protein_id="NP_416971.1" /db_xref="GI:16130401" /db_xref="ASAP:ABE-0008156" /db_xref="UniProtKB/Swiss-Prot:P0A7D7" /db_xref="EcoGene:EG10791" /db_xref="GeneID:946957" /translation="MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFD RKGMVNNKFNYFIMSKLAEAGIPTQMERLLSDTECLVKKLDMVPVECVVRNRAAGSLV KRLGIEEGIELNPPLFDLFLKNDAMHDPMVNESYCETFGWVSKENLARMKELTYKAND VLKKLFDDAGLILVDFKLEFGLYKGEVVLGDEFSPDGSRLWDKETLEKMDKDRFRQSL GGLIEAYEAVARRLGVQLD" repeat_region 2597673..2597718 /note="REP181 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(2597831..2598865) /gene="bamC" /locus_tag="b2477" /gene_synonym="dapX; ECK2473; JW2462; nlpB" /db_xref="EcoGene:EG10658" /db_xref="GeneID:946954" CDS complement(2597831..2598865) /gene="bamC" /locus_tag="b2477" /gene_synonym="dapX; ECK2473; JW2462; nlpB" /function="membrane; Macromolecule synthesis, modification: Lipoprotein" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="lipoprotein-34" /codon_start=1 /transl_table=11 /product="BamABCDE complex OM biogenesis lipoprotein" /protein_id="NP_416972.4" /db_xref="GI:90111442" /db_xref="ASAP:ABE-0008161" /db_xref="UniProtKB/Swiss-Prot:P0A903" /db_xref="EcoGene:EG10658" /db_xref="GeneID:946954" /translation="MAYSVQKSRLAKVAGVSLVLLLAACSSDSRYKRQVSGDEAYLEA APLAELHAPAGMILPVTSGDYAIPVTNGSGAVGKALDIRPPAQPLALVSGARTQFTGD TASLLVENGRGNTLWPQVVSVLQAKNYTITQRDDAGQTLTTDWVQWNRLDEDEQYRGR YQISVKPQGYQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNVISAGLDKSATDAAN AAQNRASTTMDVQSAADDTGLPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNM AVTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDAL VAVFQAAFSK" gene complement(2598882..2599760) /gene="dapA" /locus_tag="b2478" /gene_synonym="ECK2474; JW2463" /db_xref="EcoGene:EG10205" /db_xref="GeneID:946952" CDS complement(2598882..2599760) /gene="dapA" /locus_tag="b2478" /gene_synonym="ECK2474; JW2463" /EC_number="4.3.3.7" /function="enzyme; Amino acid biosynthesis: Lysine" /experiment="N-terminus verified by Edman degradation: PMID 9298646,9600841,9740056" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009089 - lysine biosynthetic process via diaminopimelate" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate synthase" /protein_id="NP_416973.1" /db_xref="GI:16130403" /db_xref="ASAP:ABE-0008163" /db_xref="UniProtKB/Swiss-Prot:P0A6L2" /db_xref="EcoGene:EG10205" /db_xref="GeneID:946952" /translation="MFTGSIVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGT TGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLT VTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGI KEATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQLGGHGVISVTANVAARDMAQMC KLAAEGHFAEARVINQRLMPLHNKLFVEPNPIPVKWACKELGLVATDTLRLPMTPITD SGRETVRAALKHAGLL" gene 2599906..2600478 /gene="gcvR" /locus_tag="b2479" /gene_synonym="ECK2475; JW2464; yffD" /db_xref="EcoGene:EG11149" /db_xref="GeneID:946950" CDS 2599906..2600478 /gene="gcvR" /locus_tag="b2479" /gene_synonym="ECK2475; JW2464; yffD" /function="regulator; Central intermediary metabolism: Pool, multipurpose conversions" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0009063 - cellular amino acid catabolic process; GO:0006350 - transcription" /note="transcriptional regulation of gcv operon" /codon_start=1 /transl_table=11 /product="transcriptional repressor, regulatory protein accessory to GcvA" /protein_id="NP_416974.4" /db_xref="GI:90111443" /db_xref="ASAP:ABE-0008168" /db_xref="UniProtKB/Swiss-Prot:P0A9I3" /db_xref="EcoGene:EG11149" /db_xref="GeneID:946950" /translation="MTLSSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML GEEFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMKRTTARPRPPMPASVWVQVDV ADSPHLIERFTALFDAHHMNIAELVSRTQPAENERAAQLHIQITAHSPASADAANIEQ AFKALCTELNAQGSINVVNYSQHDEQDGVK" gene 2600478..2600948 /gene="bcp" /locus_tag="b2480" /gene_synonym="ECK2476; JW2465" /db_xref="EcoGene:EG10108" /db_xref="GeneID:946949" CDS 2600478..2600948 /gene="bcp" /locus_tag="b2480" /gene_synonym="ECK2476; JW2465" /EC_number="1.11.1.-" /EC_number="1.11.1.7" /function="phenotype; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 9298646,9740056" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006805 - xenobiotic metabolic process" /note="bacterioferritin comigratory protein" /codon_start=1 /transl_table=11 /product="peroxiredoxin; thiol peroxidase, thioredoxin-dependent" /protein_id="NP_416975.1" /db_xref="GI:16130405" /db_xref="ASAP:ABE-0008171" /db_xref="UniProtKB/Swiss-Prot:P0AE52" /db_xref="EcoGene:EG10108" /db_xref="GeneID:946949" /translation="MNPLKAGDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTP GCTVQACGLRDNMDELKKAGVDVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVCEQ FGVWGEKSFMGKTYDGIHRISFLIDADGKIEHVFDDFKTSNHHDVVLNWLKEHA" gene 2601201..2601818 /gene="hyfA" /locus_tag="b2481" /gene_synonym="ECK2477; JW2466; yffE" /db_xref="EcoGene:EG11150" /db_xref="GeneID:946959" CDS 2601201..2601818 /gene="hyfA" /locus_tag="b2481" /gene_synonym="ECK2477; JW2466; yffE" /EC_number="1.-.-.-" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_process="GO:0009061 - anaerobic respiration" /note="hydrogenase 4 Fe-S subunit" /codon_start=1 /transl_table=11 /product="hydrogenase 4, 4Fe-4S subunit" /protein_id="NP_416976.4" /db_xref="GI:90111444" /db_xref="ASAP:ABE-0008179" /db_xref="UniProtKB/Swiss-Prot:P23481" /db_xref="EcoGene:EG11150" /db_xref="GeneID:946959" /translation="MNRFVVAEPLWCTGCNTCLAACSDVHKTQGLQQHPRLALAKTST ITAPVVCHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAISASGS RPVNAHAQYVFQAEGSLKDGEENAPTQHALLRWEPGVQTVAVKCDLCDFLPEGPACVR ACPNQALRLITGDSLQRQMKEKQRLAASWFANGGEDPLSLTQEQR" gene 2601818..2603836 /gene="hyfB" /locus_tag="b2482" /gene_synonym="ECK2478; JW2467; yffF" /db_xref="EcoGene:EG11282" /db_xref="GeneID:946961" CDS 2601818..2603836 /gene="hyfB" /locus_tag="b2482" /gene_synonym="ECK2478; JW2467; yffF" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration" /note="hydrogenase 4 membrane subunit" /codon_start=1 /transl_table=11 /product="hydrogenase 4, membrane subunit" /protein_id="NP_416977.1" /db_xref="GI:16130407" /db_xref="ASAP:ABE-0008181" /db_xref="UniProtKB/Swiss-Prot:P23482" /db_xref="EcoGene:EG11282" /db_xref="GeneID:946961" /translation="MDALQLLTWSLILYLFASLASLFLLGLDRLAIKLSGITSLVGGV IGIISGITQLHAGVTLVARFAPPFEFADLTLRMDSLSAFMVLVISLLVVVCSLYSLTY MREYEGKGAAAMGFFMNIFIASMVALLVMDNAFWFIVLFEMMSLSSWFLVIARQDKTS INAGMLYFFIAHAGSVLIMIAFLLMGRESGSLDFASFRTLSLSPGLASAVFLLAFFGF GAKAGMMPLHSWLPRAHPAAPSHASALMSGVMVKIGIFGILKVAMDLLAQTGLPLWWG ILVMAIGAISALLGVLYALAEQDIKRLLAWSTVENVGIILLAVGVAMVGLSLHDPLLT VVGLLGALFHLLNHALFKGLLFLGAGAIISRLHTHDMEKMGALAKRMPWTAAACLIGC LAISAIPPLNGFISEWYTWQSLFSLSRVEAVALQLAGPIAMVMLAVTGGLAVMCFVKM YGITFCGAPRSTHAEEAQEVPNTMIVAMLLLAALCVLIALSASWLAPKIMHIAHAFTN TPPATVASGIALVPGTFHTQVTPSLLLLLLLAMPLLPGLYWLWCRSRRAAFRRTGDAW ACGYGWENAMAPSGNGVMQPLRVVFSALFRLRQQLDPTLRLNKGLAHVTARAQSTEPF WDERVIRPIVSATQRLAKEIQHLQSGDFRLYCLYVVAALVVLLIAIAV" gene 2603847..2604794 /gene="hyfC" /locus_tag="b2483" /gene_synonym="ECK2479; JW2468" /db_xref="EcoGene:EG14211" /db_xref="GeneID:947492" CDS 2603847..2604794 /gene="hyfC" /locus_tag="b2483" /gene_synonym="ECK2479; JW2468" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration" /note="hydrogenase 4 membrane subunit" /codon_start=1 /transl_table=11 /product="hydrogenase 4, membrane subunit" /protein_id="NP_416978.4" /db_xref="GI:90111445" /db_xref="ASAP:ABE-0008183" /db_xref="UniProtKB/Swiss-Prot:P77858" /db_xref="EcoGene:EG14211" /db_xref="GeneID:947492" /translation="MRQTLCDGYLVIFALAQAVILLMLTPLFTGISRQIRARMHSRRG PGIWQDYRDIHKLFKRQEVAPTSSGLMFRLMPWVLISSMLVLAMALPLFITVSPFAGG GDLITLIYLLALFRFFFALSGLDTGSPFAGVGASRELTLGILVEPMLILSLLVLALIA GSTHIEMISNTLAMGWNSPLTTVLALLACGFACFIEMGKIPFDVAEAEQELQEGPLTE YSGAGLALAKWGLGLKQVVMASLFVALFLPFGRAQELSLACLLTSLVVTLLKVLLIFV LASIAENTLARGRFLLIHHVTWLGFSLAALAWVFWLTGL" gene 2604811..2606250 /gene="hyfD" /locus_tag="b2484" /gene_synonym="ECK2480; JW2469" /db_xref="EcoGene:EG14212" /db_xref="GeneID:947290" CDS 2604811..2606250 /gene="hyfD" /locus_tag="b2484" /gene_synonym="ECK2480; JW2469" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration" /note="hydrogenase 4 membrane subunit" /codon_start=1 /transl_table=11 /product="hydrogenase 4, membrane subunit" /protein_id="NP_416979.1" /db_xref="GI:16130409" /db_xref="ASAP:ABE-0008185" /db_xref="UniProtKB/Swiss-Prot:P77416" /db_xref="EcoGene:EG14212" /db_xref="GeneID:947290" /translation="MENLALTTLLLPFIGALVVSFSPQRRAAEWGVLFAALTTLCMLS LISAFYQADKVAVTLTLVNVGDVALFGLVIDRVSTLILFVVVFLGLLVTIYSTGYLTD KNREHPHNGTNRYYAFLLVFIGAMAGLVLSSTLLGQLLFFEITGGCSWALISYYQSDK AQRSALKALLITHIGSLGLYLAAATLFLQTGTFALSAMSELHGDARYLVYGGILFAAW GKSAQLPMQAWLPDAMEAPTPISAYLHAASMVKVGVYIFARAIIDGGNIPHVIGGVGM VMALVTILYGFLMYLPQQDMKRLLAWSTITQLGWMFFGLSLSIFGSRLALEGSIAYIV NHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLHTLPLPGVGFCVAALAITGVPPFNGF FSKFPLFAAGFALSVEYWILLPAMILLMIESVASFAWFIRWFGRVVPGKPSEAVADAA PLPGSMRLVLIVLIVMSLISSVIAATWLQ" gene 2606262..2606912 /gene="hyfE" /locus_tag="b2485" /gene_synonym="ECK2481; JW2470" /db_xref="EcoGene:EG14213" /db_xref="GeneID:945298" CDS 2606262..2606912 /gene="hyfE" /locus_tag="b2485" /gene_synonym="ECK2481; JW2470" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration" /note="hydrogenase 4 membrane subunit" /codon_start=1 /transl_table=11 /product="hydrogenase 4, membrane subunit" /protein_id="NP_416980.1" /db_xref="GI:16130410" /db_xref="ASAP:ABE-0008188" /db_xref="UniProtKB/Swiss-Prot:P0AEW1" /db_xref="EcoGene:EG14213" /db_xref="GeneID:945298" /translation="MTGSMIVNNLAGLMMLTSLFVISVKSYRLSCGFYACQSLVLVSI FATLSCLFAAEQLLIWSASAFITKVLLVPLIMTYAARNIPQNIPEKALFGPAMMALLA ALIVLLCAFVVQPVKLPMATGLKPALAVALGHFLLGLLCIVSQRNILRQIFGYCLMEN GSHLVLALLAWRAPELVEIGIATDAIFAVIVMVLLARKIWRTHGTLDVNNLTALKG" gene 2606917..2608497 /gene="hyfF" /locus_tag="b2486" /gene_synonym="ECK2482; JW2471" /db_xref="EcoGene:EG14214" /db_xref="GeneID:946962" CDS 2606917..2608497 /gene="hyfF" /locus_tag="b2486" /gene_synonym="ECK2482; JW2471" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration" /note="hydrogenase 4 membrane subunit" /codon_start=1 /transl_table=11 /product="hydrogenase 4, membrane subunit" /protein_id="NP_416981.1" /db_xref="GI:16130411" /db_xref="ASAP:ABE-0008191" /db_xref="UniProtKB/Swiss-Prot:P77437" /db_xref="EcoGene:EG14214" /db_xref="GeneID:946962" /translation="MSYSVMFALLLLTPLLFSLLCFACRKRRLSATRTVTVLHSLGIT LLLILALWVVQTAADAGEIFAAGLWLHIDGLGGLFLAILGVIGFLTGIYSIGYMRHEV AHGELSPVTLCDYYGFFHLFLFTMLLVVTSNNLIVMWAAIEATTLSSAFLVGIYGQRS SLEAAWKYIIICTVGVAFGLFGTVLVYANAASVMPQAEMAIFWSEVLKQSSLLDPTLM LLAFVFLLIGFGTKTGLFPMHAWLPDAHSEAPSPVSALLSAVLLNCALLVLIRYYIII CQAIGSDFPNRLLLIFGMLSVAVAAFFILVQRDIKRLLAYSSVENMGLVAVELGIGGP LGIFAALLHILNHSLAKTLLFCGSGNVLLKYGTRDLNVVCGMLKIMPFTAVLFGGGAL ALAGMPPFNIFLSEFMTITAGLARNHLLIIVLLLLLLTLVLAGLVRMAARVLMAKPPQ AVNRGDLGWLTTSPMVILLVMMLAMGTHIPQPVIRILAGASTIVLSGTHDLPAQRSTW HDFLPSGTASVSEKHSER" gene 2608487..2610154 /gene="hyfG" /locus_tag="b2487" /gene_synonym="ECK2483; JW2472" /db_xref="EcoGene:EG14215" /db_xref="GeneID:946964" CDS 2608487..2610154 /gene="hyfG" /locus_tag="b2487" /gene_synonym="ECK2483; JW2472" /EC_number="1.-.-.-" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_process="GO:0009061 - anaerobic respiration" /note="hydrogenase 4 subunit" /codon_start=1 /transl_table=11 /product="hydrogenase 4, subunit" /protein_id="NP_416982.1" /db_xref="GI:16130412" /db_xref="ASAP:ABE-0008194" /db_xref="UniProtKB/Swiss-Prot:P77329" /db_xref="EcoGene:EG14215" /db_xref="GeneID:946964" /translation="MNVNSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINL LPDVVQYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSR EFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRL RPEPTTDSETYPFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYV HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSI LLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLIGSRKTYGLNLIGG VRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQGIGILDRQIARDLRFD HPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFALDNMPDTPLLTEGFSY KPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANWPVLRYMLRGNTVSDAP LIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNRSPLK" gene 2610164..2610709 /gene="hyfH" /locus_tag="b2488" /gene_synonym="ECK2484; JW2473" /db_xref="EcoGene:EG14216" /db_xref="GeneID:946965" CDS 2610164..2610709 /gene="hyfH" /locus_tag="b2488" /gene_synonym="ECK2484; JW2473" /EC_number="1.-.-.-" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_process="GO:0009061 - anaerobic respiration" /note="hydrogenase 4 Fe-S subunit" /codon_start=1 /transl_table=11 /product="hydrogenase 4, Fe-S subunit" /protein_id="NP_416983.1" /db_xref="GI:16130413" /db_xref="ASAP:ABE-0008196" /db_xref="UniProtKB/Swiss-Prot:P77423" /db_xref="EcoGene:EG14216" /db_xref="GeneID:946965" /translation="MLKLLKTIMRAGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG ACACACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTN KADLYTRATFHLQRCSRCERPFAPQKTIALAAELLAQQQNAPQNREMLWAQASVCPEC KQRATLINDDTDVLLVAKEQL" gene 2610706..2611464 /gene="hyfI" /locus_tag="b2489" /gene_synonym="ECK2485; JW5805" /db_xref="EcoGene:EG14217" /db_xref="GeneID:946966" CDS 2610706..2611464 /gene="hyfI" /locus_tag="b2489" /gene_synonym="ECK2485; JW5805" /EC_number="1.-.-.-" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_process="GO:0009061 - anaerobic respiration" /note="hydrogenase 4 Fe-S subunit" /codon_start=1 /transl_table=11 /product="hydrogenase 4, Fe-S subunit" /protein_id="NP_416984.1" /db_xref="GI:16130414" /db_xref="ASAP:ABE-0008198" /db_xref="UniProtKB/Swiss-Prot:P77668" /db_xref="EcoGene:EG14217" /db_xref="GeneID:946966" /translation="MSPVLTQHVSQPITLDEQTQKMKRHLLQDIRRSAYVYRVDCGGC NACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQ QKIHAVDYRDPTGVTMQPLWPQIPPSQRIAIEREARRLAGYRQGREICDRLLRHLSDD PTGNRVNTWLRDADDPRLNSIVQQLFRVLRGLHD" gene 2611457..2611870 /gene="hyfJ" /locus_tag="b2490" /gene_synonym="ECK2486; JW2475" /db_xref="EcoGene:EG14218" /db_xref="GeneID:947713" CDS 2611457..2611870 /gene="hyfJ" /locus_tag="b2490" /gene_synonym="ECK2486; JW2475" /function="putative factor; Not classified" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="putative processing element hydrogenase 4" /protein_id="NP_416985.4" /db_xref="GI:90111446" /db_xref="ASAP:ABE-0008200" /db_xref="UniProtKB/Swiss-Prot:P77453" /db_xref="EcoGene:EG14218" /db_xref="GeneID:947713" /translation="MTEECGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGV IDCLNVAFRCPLTEYEDWLALVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLA DDATSVWQARSIQFIHLLDEIVQEPAIYLMARKIA" gene 2611900..2613912 /gene="hyfR" /locus_tag="b2491" /gene_synonym="ECK2487; JW2476" /db_xref="EcoGene:EG14219" /db_xref="GeneID:948886" CDS 2611900..2613912 /gene="hyfR" /locus_tag="b2491" /gene_synonym="ECK2487; JW2476" /function="putative regulator; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0009061 - anaerobic respiration; GO:0006350 - transcription" /note="putative 2-component regulator, interaction with sigma 54" /codon_start=1 /transl_table=11 /product="hydrogenase-4 transcriptional activator" /protein_id="NP_416986.4" /db_xref="GI:90111447" /db_xref="ASAP:ABE-0008204" /db_xref="UniProtKB/Swiss-Prot:P71229" /db_xref="EcoGene:EG14219" /db_xref="GeneID:948886" /translation="MAMSDEAMFAPPQGITIEAVNGMLAERLAQKHGKASLLRAFIPL PPPFSPVQLIELHVLKSNFYYRYHDDGSDVTATTEYQGEMVDYSRHAVLLGSSGMAEL RFIRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDI TNAVLSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSDLSASHCACL PRCMPGESVLLTQTLQTRQPTLTHRADDLFLWQRDPLLLLLASNGCESALLIPLTFGN HTPGALLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQL SEQLLSNLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLS PRRDKPLVKINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGD LPLELQPKLLRVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRL NVFPLELPPLRDRPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRE LENVIERAVLLTRGNSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEER QRIVQVLRETNGIVAGPRGAATRLGMKRTTLLSRMQRLGISVREVL" gene 2613934..2614782 /gene="focB" /locus_tag="b2492" /gene_synonym="ECK2488; JW2477" /db_xref="EcoGene:EG14220" /db_xref="GeneID:949032" CDS 2613934..2614782 /gene="focB" /locus_tag="b2492" /gene_synonym="ECK2488; JW2477" /function="putative transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="probable formate transporter (formate channel 2)" /codon_start=1 /transl_table=11 /product="putative formate transporter" /protein_id="NP_416987.1" /db_xref="GI:16130417" /db_xref="ASAP:ABE-0008206" /db_xref="UniProtKB/Swiss-Prot:P77733" /db_xref="EcoGene:EG14220" /db_xref="GeneID:949032" /translation="MRNKLSFDLQLSARKAAIAERIAAHKIARSKVSVFLMAMSAGVF MAIGFTFYLSVIADAPSSQALTHLVGGLCFTLGFILLAVCGTSLFTSSVMTVMAKSRG VISWRTWLINALLVACGNLAGIACFSLLIWFSGLVMSENAMWGVAVLHCAEGKMHHTF TESVSLGIMCNLMVCLALWMSYCGRSLCDKIVAMILPITLFVASGFEHCIANLFVIPF AIAIRHFAPPPFWQLAHSSADNFPALTVSHFITANLLPVMLGNIIGGAVLVSMCYRAI YLRQEP" gene complement(2614820..2615881) /gene="yfgO" /locus_tag="b2493" /gene_synonym="ECK2489; JW2478; perM" /db_xref="EcoGene:EG14221" /db_xref="GeneID:945894" CDS complement(2614820..2615881) /gene="yfgO" /locus_tag="b2493" /gene_synonym="ECK2489; JW2478; perM" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative permease" /codon_start=1 /transl_table=11 /product="putative UPF0118 family inner membrane permease" /protein_id="NP_416988.1" /db_xref="GI:16130418" /db_xref="ASAP:ABE-0008208" /db_xref="UniProtKB/Swiss-Prot:P0AFI9" /db_xref="EcoGene:EG14221" /db_xref="GeneID:945894" /translation="MLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLV AIVLAYLLEWPTVRLQSIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRD MPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLL TIAVYLVLVPLMVFFLLKDKEQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVL EMIVVGIATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGT EFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPL ATLIKAVIHAWPDGQIAQE" gene 2616094..2617557 /gene="bepA" /locus_tag="b2494" /gene_synonym="ECK2490; JW2479; yfgC" /db_xref="EcoGene:EG14199" /db_xref="GeneID:947029" CDS 2616094..2617557 /gene="bepA" /locus_tag="b2494" /gene_synonym="ECK2490; JW2479; yfgC" /codon_start=1 /transl_table=11 /product="OM protein maintenance and assembly metalloprotease and chaperone, periplasmic" /protein_id="NP_416989.1" /db_xref="GI:16130419" /db_xref="ASAP:ABE-0008212" /db_xref="UniProtKB/Swiss-Prot:P66948" /db_xref="EcoGene:EG14199" /db_xref="GeneID:947029" /translation="MFRQLKKNLVATLIAAMTIGQVAPAFADSADTLPDMGTSAGSTL SIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINND EINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSAPLT WVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFD PQAMPTFLEKLLDQARYSSRPPEILLTHPLPESRLADARNRANQMRPMVVQSSEDFYL AKARTLGMYNSGRNQLTSDLLDEWAKGNVRQQRAAQYGRALQAMEANKYDEARKTLQP LLAAEPGNAWYLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQLNLANAYLQGGQP QEAANILNRYTFNNKDDSNGWDLLAQAEAALNNRDQELAARAEGYALAGRLDQAISLL SSASSQVKLGSLQQARYDARIDQLRQLQERFKPYTKM" gene 2617578..2617937 /gene="yfgD" /locus_tag="b2495" /gene_synonym="ECK2491; JW2480" /db_xref="EcoGene:EG14200" /db_xref="GeneID:946974" CDS 2617578..2617937 /gene="yfgD" /locus_tag="b2495" /gene_synonym="ECK2491; JW2480" /function="putative enzyme; Not classified" /GO_process="GO:0006805 - xenobiotic metabolic process" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_416990.1" /db_xref="GI:16130420" /db_xref="ASAP:ABE-0008214" /db_xref="UniProtKB/Swiss-Prot:P76569" /db_xref="EcoGene:EG14200" /db_xref="GeneID:946974" /translation="MTKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAAT LRDLLKILGMNSARELMRQKEDLYKELNLADSSLSEEALIQAMVDNPKLMERPIVVAN GKARIGRPPEQVLEIVG" repeat_region 2617968..2618004 /note="REP182 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2618075..2618776) /gene="hda" /locus_tag="b2496" /gene_synonym="ECK2492; idaB; JW5397; yfgE" /db_xref="EcoGene:EG14201" /db_xref="GeneID:946977" CDS complement(2618075..2618776) /gene="hda" /locus_tag="b2496" /gene_synonym="ECK2492; idaB; JW5397; yfgE" /function="putative factor; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 18977760" /GO_process="GO:0006261 - DNA-dependent DNA replication" /note="putative DNA replication factor" /codon_start=1 /transl_table=11 /product="ATPase regulatory factor involved in DnaA inactivation" /protein_id="NP_416991.2" /db_xref="GI:226524737" /db_xref="ASAP:ABE-0008217" /db_xref="UniProtKB/Swiss-Prot:P69931" /db_xref="EcoGene:EG14201" /db_xref="GeneID:946977" /translation="MNTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSG YIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCID NIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIY KLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITA QRKLTIPFVKEILKL" gene complement(2618871..2620160) /gene="uraA" /locus_tag="b2497" /gene_synonym="ECK2493; JW2482" /db_xref="EcoGene:EG12129" /db_xref="GeneID:946978" CDS complement(2618871..2620160) /gene="uraA" /locus_tag="b2497" /gene_synonym="ECK2493; JW2482" /function="transport; Transport of small molecules: Nucleosides, purines, pyrimidines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /note="uracil transport" /codon_start=1 /transl_table=11 /product="uracil permease" /protein_id="NP_416992.1" /db_xref="GI:16130422" /db_xref="ASAP:ABE-0008219" /db_xref="UniProtKB/Swiss-Prot:P0AGM7" /db_xref="EcoGene:EG12129" /db_xref="GeneID:946978" /translation="MTRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPA TVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFC LVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTII ISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTL YTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVI SGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVM GGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGM ALATIVGIGLSLIFKLISVLRPEEVVLDAEDADITDK" gene complement(2620246..2620872) /gene="upp" /locus_tag="b2498" /gene_synonym="ECK2494; JW2483; uraP" /db_xref="EcoGene:EG11332" /db_xref="GeneID:946979" CDS complement(2620246..2620872) /gene="upp" /locus_tag="b2498" /gene_synonym="ECK2494; JW2483; uraP" /EC_number="2.4.2.9" /function="enzyme; Salvage of nucleosides and nucleotides" /experiment="N-terminus verified by Edman degradation: PMID 9298646" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="uracil phosphoribosyltransferase" /protein_id="NP_416993.2" /db_xref="GI:90111448" /db_xref="ASAP:ABE-0008224" /db_xref="UniProtKB/Swiss-Prot:P0A8F0" /db_xref="EcoGene:EG11332" /db_xref="GeneID:946979" /translation="MKIVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEAT ADLETEKVTIEGWNGPVEIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMY RNEETLEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLV AAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK" gene 2621197..2622234 /gene="purM" /locus_tag="b2499" /gene_synonym="ECK2495; JW2484; purG; purI" /db_xref="EcoGene:EG10798" /db_xref="GeneID:946975" CDS 2621197..2622234 /gene="purM" /locus_tag="b2499" /gene_synonym="ECK2495; JW2484; purG; purI" /EC_number="6.3.3.1" /function="enzyme; Purine ribonucleotide biosynthesis" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006164 - purine nucleotide biosynthetic process" /note="phosphoribosylaminoimidazole synthetase = AIR synthetase" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole synthetase" /protein_id="NP_416994.1" /db_xref="GI:16130424" /db_xref="ASAP:ABE-0008230" /db_xref="UniProtKB/Swiss-Prot:P08178" /db_xref="EcoGene:EG10798" /db_xref="GeneID:946975" /translation="MTDKTSLSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGG FGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEP LFFLDYYATGKLDVDTASAVISGIAEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFC VGVVEKSEIIDGSKVSDGDVLIALGSSGPHSNGYSLVRKILEVSGCDPQTTELDGKPL ADHLLAPTRIYVKSVLELIEKVDVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQW PEVFNWLQTAGNVEHHEMYRTFNCGVGMIIALPAPEVDKALALLNANGENAWKIGIIK ASDSEQRVVIE" gene 2622234..2622872 /gene="purN" /locus_tag="b2500" /gene_synonym="ade; ECK2496; JW2485" /db_xref="EcoGene:EG10799" /db_xref="GeneID:946973" CDS 2622234..2622872 /gene="purN" /locus_tag="b2500" /gene_synonym="ade; ECK2496; JW2485" /EC_number="2.1.2.2" /function="enzyme; Purine ribonucleotide biosynthesis" /experiment="N-terminus verified by Edman degradation: PMID 2204419" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006164 - purine nucleotide biosynthetic process" /codon_start=1 /transl_table=11 /product="phosphoribosylglycinamide formyltransferase 1" /protein_id="NP_416995.1" /db_xref="GI:16130425" /db_xref="ASAP:ABE-0008232" /db_xref="UniProtKB/Swiss-Prot:P08179" /db_xref="EcoGene:EG10799" /db_xref="GeneID:946973" /translation="MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLE RARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAG RLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGD SEDDITARVQTQEHAIYPLVISWFADGRLKMHENAAWLDGQRLPPQGYAADE" gene 2623044..2625110 /gene="ppk" /locus_tag="b2501" /gene_synonym="ECK2497; JW2486" /db_xref="EcoGene:EG11510" /db_xref="GeneID:946971" CDS 2623044..2625110 /gene="ppk" /locus_tag="b2501" /gene_synonym="ECK2497; JW2486" /EC_number="2.7.4.1" /function="enzyme; Central intermediary metabolism: Phosphorus compounds" /GO_process="GO:0006793 - phosphorus metabolic process" /note="polyphosphate kinase" /codon_start=1 /transl_table=11 /product="polyphosphate kinase, component of RNA degradosome" /protein_id="NP_416996.1" /db_xref="GI:16130426" /db_xref="ASAP:ABE-0008235" /db_xref="UniProtKB/Swiss-Prot:P0A7B1" /db_xref="EcoGene:EG11510" /db_xref="GeneID:946971" /translation="MGQEKLYIEKELSWLSFNERVLQEAADKSNPLIERMRFLGIYSN NLDEFYKVRFAELKRRIIISEEQGSNSHSRHLLGKIQSRVLKADQEFDGLYNELLLEM ARNQIFLINERQLSVNQQNWLRHYFKQYLRQHITPILINPDTDLVQFLKDDYTYLAVE IIRGDTIRYALLEIPSDKVPRFVNLPPEAPRRRKPMILLDNILRYCLDDIFKGFFDYD ALNAYSMKMTRDAEYDLVHEMEASLMELMSSSLKQRLTAEPVRFVYQRDMPNALVEVL REKLTISRYDSIVPGGRYHNFKDFINFPNVGKANLVNKPLPRLRHIWFDKAQFRNGFD AIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHN GKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFLISRKENGEVV RYAHIGTGNFNEKTARLYTDYSLLTADARITNEVRRVFNFIENPYRPVTFDYLMVSPQ NSRRLLYEMVDREIANAQQGLPSGITLKLNNLVDKGLVDRLYAASSSGVPVNLLVRGM CSLIPNLEGISDNIRAISIVDRYLEHDRVYIFENGGDKKVYLSSADWMTRNIDYRIEV ATPLLDPRLKQRVLDIIDILFSDTVKARYIDKELSNRYVPRGNRRKVRAQLAIYDYIK SLEQPE" gene 2625115..2626656 /gene="ppx" /locus_tag="b2502" /gene_synonym="ECK2498; JW2487" /db_xref="EcoGene:EG11403" /db_xref="GeneID:946970" CDS 2625115..2626656 /gene="ppx" /locus_tag="b2502" /gene_synonym="ECK2498; JW2487" /EC_number="3.6.1.11" /function="enzyme; Central intermediary metabolism: Phosphorus compounds" /GO_process="GO:0006793 - phosphorus metabolic process" /codon_start=1 /transl_table=11 /product="exopolyphosphatase" /protein_id="NP_416997.1" /db_xref="GI:16130427" /db_xref="ASAP:ABE-0008238" /db_xref="UniProtKB/Swiss-Prot:P0AFL6" /db_xref="EcoGene:EG11403" /db_xref="GeneID:946970" /translation="MPIHDKSPRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQR VHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFL KRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI LVESRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLETLTWQFRIQGWNVAMGASG TIKAAHEVLMEMGEKDGIITPERLEKLVKEVLRHRNFASLSLPGLSEERKTVFVPGLA ILCGVFDALAIRELRLSDGALREGVLYEMEGRFRHQDVRSRTASSLANQYHIDSEQAR RVLDTTMQMYEQWREQQPKLAHPQLEALLRWAAMLHEVGLNINHSGLHRHSAYILQNS DLPGFNQEQQLMMATLVRYHRKAIKLDDLPRFTLFKKKQFLPLIQLLRLGVLLNNQRQ ATTTPPTLTLITDDSHWTLRFPHDWFSQNALVLLDLEKEQEYWEGVAGWRLKIEEEST PEIAA" gene complement(2626695..2628938) /gene="yfgF" /locus_tag="b2503" /gene_synonym="ECK2499; JW2488" /db_xref="EcoGene:EG14202" /db_xref="GeneID:946968" CDS complement(2626695..2628938) /gene="yfgF" /locus_tag="b2503" /gene_synonym="ECK2499; JW2488" /function="enzyme; Not classified" /note="putative cytochrome C-type biogenesis protein" /codon_start=1 /transl_table=11 /product="cyclic-di-GMP phosphodiesterase, anaerobic" /protein_id="NP_416998.1" /db_xref="GI:16130428" /db_xref="ASAP:ABE-0008240" /db_xref="UniProtKB/Swiss-Prot:P77172" /db_xref="EcoGene:EG14202" /db_xref="GeneID:946968" /translation="MKLNATYIKIRDKWWGLPLFLPSLILPIFAHINTFAHISSGEVF LFYLPLALMISMMMFFSWAALPGIALGIFVRKYAELGFYETLSLTANFIIIIILCWGG YRVFTPRRNNVSHGDTRLISQRIFWQIVFPATLFLILFQFAAFVGLLASRENLVGVMP FNLGTLINYQALLVGNLIGVPLCYFIIRVVRNPFYLRSYYSQLKQQVDAKVTKKEFAL WLLALGALLLLLCMPLNEKSTIFSTNYTLSLLLPLMMWGAMRYGYKLISLLWAVVLMI SIHSYQNYIPIYPGYTTQLTITSSSYLVFSFIVNYMAVLATRQRAVVRRIQRLAYVDP VVHLPNVRALNRALRDAPWSALCYLRIPGMEMLVKNYGIMLRIQYKQKLSHWLSPLLE PGEDVYQLSGNDLALRLNTESHQERITALDSHLKQFRFFWDGMPMQPQIGVSYCYVRS PVNHIYLLLGELNTVAELSIVTNAPENMQRRGAMYLQRELKDKVAMMNRLQQALEHNH FFLMAQPITGMRGDVYHEILLRMKGENDELISPDSFLPVAHEFGLSSSIDMWVIEHTL QFMAENRAKMPAHRFAINLSPTSVCQARFPVEVSQLLAKYQIEAWQLIFEVTESNALT NVKQAQITLQHLQELGCQIAIDDFGTGYASYARLKNVNADLLKIDGSFIRNIVSNSLD YQIVASICHLARMKKMLVVAEYVENEEIREAVLSLGIDYMQGYLIGKPQPLIDTLNEI EPIRESA" gene 2629290..2629481 /gene="yfgG" /locus_tag="b2504" /gene_synonym="ECK2500; JW5399" /db_xref="EcoGene:EG14203" /db_xref="GeneID:946980" CDS 2629290..2629481 /gene="yfgG" /locus_tag="b2504" /gene_synonym="ECK2500; JW5399" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_416999.1" /db_xref="GI:16130429" /db_xref="ASAP:ABE-0008247" /db_xref="UniProtKB/Swiss-Prot:P64545" /db_xref="EcoGene:EG14203" /db_xref="GeneID:946980" /translation="MSQATSMRKRHRFNSRMTRIVLLISFIFFFGRFIYSSVGAWQHH QSKKEAQQSTLSVESPVQR" gene 2629792..2630310 /gene="yfgH" /locus_tag="b2505" /gene_synonym="ECK2501; JW5400" /db_xref="EcoGene:EG14204" /db_xref="GeneID:945709" CDS 2629792..2630310 /gene="yfgH" /locus_tag="b2505" /gene_synonym="ECK2501; JW5400" /function="putative membrane; Not classified" /GO_component="GO:0009279 - cell outer membrane" /note="putative outer membrane lipoprotein" /codon_start=1 /transl_table=11 /product="outer membrane integrity lipoprotein" /protein_id="NP_417000.1" /db_xref="GI:16130430" /db_xref="ASAP:ABE-0008250" /db_xref="UniProtKB/Swiss-Prot:P65290" /db_xref="EcoGene:EG14204" /db_xref="GeneID:945709" /translation="MMKFKKCLLPVAMLASFTLAGCQSNADDHAADVYQTDQLNTKQE TKTVNIISILPAKVAVDNSQNKRNAQAFGALIGAVAGGVIGHNVGSGSNSGTTAGAVG GGAVGAAAGSMVNDKTLVEGVSLTYKEGTKVYTSTQVGKECQFTTGLAVVITTTYNET RIQPNTKCPEKS" gene 2630326..2630865 /gene="yfgI" /locus_tag="b2506" /gene_synonym="ECK2502; JW2490" /db_xref="EcoGene:EG14205" /db_xref="GeneID:945168" CDS 2630326..2630865 /gene="yfgI" /locus_tag="b2506" /gene_synonym="ECK2502; JW2490" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative membrane protein" /codon_start=1 /transl_table=11 /product="nalidixic acid resistance protein, putative periplasmic protein" /protein_id="NP_417001.1" /db_xref="GI:16130431" /db_xref="ASAP:ABE-0008252" /db_xref="UniProtKB/Swiss-Prot:P76573" /db_xref="EcoGene:EG14205" /db_xref="GeneID:945168" /translation="MKKVFLCAILASLSYPAIASSLQDQLSAVAEAEQQGKNEEQRQH DEWVAERNREIQQEKQRRANAQAAANKRAATAAANKKARQDKLDAEASADKKRDQSYE DELRSLEIQKQKLALAKEEARVKRENEFIDQELKHKAAQTDVVQSEADANRNMTEGGR DLMKSVGKAEENKSDSWFN" gene complement(2630958..2632535) /gene="guaA" /locus_tag="b2507" /gene_synonym="ECK2503; JW2491" /db_xref="EcoGene:EG10420" /db_xref="GeneID:947334" CDS complement(2630958..2632535) /gene="guaA" /locus_tag="b2507" /gene_synonym="ECK2503; JW2491" /EC_number="6.3.5.2" /function="enzyme; Purine ribonucleotide biosynthesis" /experiment="N-terminus verified by Edman degradation: PMID 3894345" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion; GO:0006164 - purine nucleotide biosynthetic process" /note="GMP synthetase (glutamine-hydrolyzing)" /codon_start=1 /transl_table=11 /product="GMP synthetase (glutamine aminotransferase)" /protein_id="NP_417002.1" /db_xref="GI:16130432" /db_xref="ASAP:ABE-0008254" /db_xref="UniProtKB/Swiss-Prot:P04079" /db_xref="EcoGene:EG10420" /db_xref="GeneID:947334" /translation="MTENIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEA QIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEA SNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVAST ESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDAV ARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDM FGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQ GTIYPDVIESAASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLELG LPYDMLYRHPFPGPGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYDKVSQAFTV FLPVRSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGIS RVVYDISGKPPATIEWE" gene complement(2632604..2634070) /gene="guaB" /locus_tag="b2508" /gene_synonym="ECK2504; guaR; JW5401" /db_xref="EcoGene:EG10421" /db_xref="GeneID:946985" CDS complement(2632604..2634070) /gene="guaB" /locus_tag="b2508" /gene_synonym="ECK2504; guaR; JW5401" /EC_number="1.1.1.205" /function="enzyme; Purine ribonucleotide biosynthesis" /experiment="N-terminus verified by Edman degradation: PMID 9298646,9600841,9629924,9740056" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion; GO:0006164 - purine nucleotide biosynthetic process" /codon_start=1 /transl_table=11 /product="IMP dehydrogenase" /protein_id="NP_417003.1" /db_xref="GI:16130433" /db_xref="ASAP:ABE-0008257" /db_xref="UniProtKB/Swiss-Prot:P0ADG7" /db_xref="EcoGene:EG10421" /db_xref="GeneID:946985" /translation="MLRIAKEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPM LSAAMDTVTEARLAIALAQEGGIGFIHKNMSIERQAEEVRRVKKHESGVVTDPQTVLP TTTLREVKELTERNGFAGYPVVTEENELVGIITGRDVRFVTDLNQPVSVYMTPKERLV TVREGEAREVVLAKMHEKRVEKALVVDDEFHLIGMITVKDFQKAERKPNACKDEQGRL RVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGG NVATAAGARALAEAGCSAVKVGIGPGSICTTRIVTGVGVPQITAVADAVEALEGTGIP VIADGGIRFSGDIAKAIAAGASAVMVGSMLAGTEESPGEIELYQGRSYKSYRGMGSLG AMSKGSSDRYFQSDNAADKLVPEGIEGRVAYKGRLKEIIHQQMGGLRSCMGLTGCGTI DELRTKAEFVRISGAGIQESHVHDVTITKESPNYRLGS" gene 2634232..2635602 /gene="xseA" /locus_tag="b2509" /gene_synonym="ECK2505; JW2493; xse" /db_xref="EcoGene:EG11072" /db_xref="GeneID:946988" CDS 2634232..2635602 /gene="xseA" /locus_tag="b2509" /gene_synonym="ECK2505; JW2493; xse" /EC_number="3.1.11.6" /function="enzyme; Degradation of DNA" /experiment="N-terminus verified by Edman degradation: PMID 3021756" /GO_process="GO:0006308 - DNA catabolic process" /codon_start=1 /transl_table=11 /product="exonuclease VII, large subunit" /protein_id="NP_417004.1" /db_xref="GI:16130434" /db_xref="ASAP:ABE-0008263" /db_xref="UniProtKB/Swiss-Prot:P04994" /db_xref="EcoGene:EG11072" /db_xref="GeneID:946988" /translation="MLPSQSPAIFTVSRLNQTVRLLLEHEMGQVWISGEISNFTQPAS GHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIVESM QPAGEGLLQQKYEQLKAKLQAEGLFDQQYKKPLPSPAHCVGVITSKTGAALHDILHVL KRRDPSLPVIIYPAAVQGDDAPGQIVRAIELANQRNECDVLIVGRGGGSLEDLWSFND ERVARAIFTSRIPVVSAVGHETDVTIADFVADLRAPTPSAAAEVVSRNQQELLRQVQS TRQRLEMAMDYYLANRTRRFTQIHHRLQQQHPQLRLARQQTMLERLQKRMSFALENQL KRTGQQQQRLTQRLNQQNPQPKIHRAQTRIQQLEYRLAETLRAQLSATRERFGNAVTH LEAVSPLSTLARGYSVTTATDGNVLKKVKQVKAGEMLTTRLEDGWIESEVKNIQPVKK SRKKVH" gene complement(2635599..2635814) /gene="yfgJ" /locus_tag="b2510" /gene_synonym="ECK2506; JW5402" /db_xref="EcoGene:EG14206" /db_xref="GeneID:946984" CDS complement(2635599..2635814) /gene="yfgJ" /locus_tag="b2510" /gene_synonym="ECK2506; JW5402" /GO_process="GO:0042966 - biotin carboxyl carrier protein biosynthetic process" /codon_start=1 /transl_table=11 /product="DUF1407 family protein" /protein_id="NP_417005.2" /db_xref="GI:90111449" /db_xref="ASAP:ABE-0008266" /db_xref="UniProtKB/Swiss-Prot:P76575" /db_xref="EcoGene:EG14206" /db_xref="GeneID:946984" /translation="MELHCPQCQHVLDQDNGHARCRSCGEFIEMKALCPDCHQPLQVL KACGAVDYFCQHGHGLISKKRVEFVLA" gene complement(2635884..2637356) /gene="der" /locus_tag="b2511" /gene_synonym="ECK2507; engA; JW5403; yfgK" /db_xref="EcoGene:EG14207" /db_xref="GeneID:946983" CDS complement(2635884..2637356) /gene="der" /locus_tag="b2511" /gene_synonym="ECK2507; engA; JW5403; yfgK" /function="putative factor; Not classified" /note="putative GTP-binding factor" /codon_start=1 /transl_table=11 /product="GTPase; multicopy suppressor of ftsJ" /protein_id="NP_417006.2" /db_xref="GI:90111450" /db_xref="ASAP:ABE-0008270" /db_xref="UniProtKB/Swiss-Prot:P0A6P5" /db_xref="EcoGene:EG14207" /db_xref="GeneID:946983" /translation="MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGR AEIEGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAI AKHLRSREKPTFLVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLL PWMEDLAPQEEVDEDAEYWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTL TNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVI KTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQV KETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAV EDHQPPLVRGRRVKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMG SPIRIQFKEGENPYANKRNTLTPTQMRKRKRLMKHIKKNK" gene complement(2637474..2638652) /gene="bamB" /locus_tag="b2512" /gene_synonym="ECK2508; JW2496; yfgL" /db_xref="EcoGene:EG14208" /db_xref="GeneID:946982" CDS complement(2637474..2638652) /gene="bamB" /locus_tag="b2512" /gene_synonym="ECK2508; JW2496; yfgL" /GO_process="GO:0006464 - protein modification process" /note="putative dehydrogenase" /codon_start=1 /transl_table=11 /product="BamABCDE complex OM biogenesis lipoprotein" /protein_id="NP_417007.1" /db_xref="GI:16130437" /db_xref="ASAP:ABE-0008272" /db_xref="UniProtKB/Swiss-Prot:P77774" /db_xref="EcoGene:EG14208" /db_xref="GeneID:946982" /translation="MQLRKLLLPGLLSVTLLSGCSLFNSEEDVVKMSPLPTVENQFTP TTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDG WFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDG LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVGGDNGRVSA VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ IMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYN GNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR " gene complement(2638663..2639283) /gene="yfgM" /locus_tag="b2513" /gene_synonym="ECK2509; JW2497" /db_xref="EcoGene:EG14209" /db_xref="GeneID:946981" CDS complement(2638663..2639283) /gene="yfgM" /locus_tag="b2513" /gene_synonym="ECK2509; JW2497" /codon_start=1 /transl_table=11 /product="ancillary SecYEG translocon subunit; putative anti-RcsB factor" /protein_id="NP_417008.1" /db_xref="GI:16130438" /db_xref="ASAP:ABE-0008274" /db_xref="UniProtKB/Swiss-Prot:P76576" /db_xref="EcoGene:EG14209" /db_xref="GeneID:946981" /translation="MEIYENENDQVEAVKRFFAENGKALAVGVILGVGALIGWRYWNS HQVDSARSASLAYQNAVTAVSEGKPDSIPAAEKFAAENKNTYGALASLELAQQFVDKN ELEKAAAQLQQGLADTSDENLKAVINLRLARVQVQLKQADAALKTLDTIKGEGWAAIV ADLRGEALLSKGDKQGARSAWEAGVKSDVTPALSEMMQMKINNLSI" gene complement(2639301..2640575) /gene="hisS" /locus_tag="b2514" /gene_synonym="ECK2510; JW2498" /db_xref="EcoGene:EG10453" /db_xref="GeneID:946989" CDS complement(2639301..2640575) /gene="hisS" /locus_tag="b2514" /gene_synonym="ECK2510; JW2498" /EC_number="6.1.1.21" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="histidine tRNA synthetase" /codon_start=1 /transl_table=11 /product="histidyl tRNA synthetase" /protein_id="NP_417009.1" /db_xref="GI:16130439" /db_xref="ASAP:ABE-0008278" /db_xref="UniProtKB/Swiss-Prot:P60906" /db_xref="EcoGene:EG10453" /db_xref="GeneID:946989" /translation="MAKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLP IVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE QRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEH VTLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQAL LNDAPALGDYLDEESREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSL GSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLV ASGADTQSAAMALAERLRDELPGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEV ANGTAVVKDLRSGEQTAVAQDSVAAHLRTLLG" gene complement(2640686..2641804) /gene="ispG" /locus_tag="b2515" /gene_synonym="ECK2511; gcpE; JW2499" /db_xref="EcoGene:EG10370" /db_xref="GeneID:946991" CDS complement(2640686..2641804) /gene="ispG" /locus_tag="b2515" /gene_synonym="ECK2511; gcpE; JW2499" /EC_number="1.17.7.1" /codon_start=1 /transl_table=11 /product="1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase" /protein_id="NP_417010.1" /db_xref="GI:16130440" /db_xref="ASAP:ABE-0008281" /db_xref="UniProtKB/Swiss-Prot:P62620" /db_xref="EcoGene:EG10370" /db_xref="GeneID:946991" /translation="MHNQAPIQRRKSTRIYVGNVPIGDGAPIAVQSMTNTRTTDVEAT VNQIKALERVGADIVRVSVPTMDAAEAFKLIKQQVNVPLVADIHFDYRIALKVAEYGV DCLRINPGNIGNEERIRMVVDCARDKNIPIRIGVNAGSLEKDLQEKYGEPTPQALLES AMRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARSGAV KSAIGLGLLLSEGIGDTLRVSLAADPVEEIKVGFDILKSLRIRSRGINFIACPTCSRQ EFDVIGTVNALEQRLEDIITPMDVSIIGCVVNGPGEALVSTLGVTGGNKKSGLYEDGV RKDRLDNNDMIDQLEARIRAKASQLDEARRIDVQQVEK" gene complement(2641831..2642844) /gene="rodZ" /locus_tag="b2516" /gene_synonym="ECK2512; JW2500; yfgA" /db_xref="EcoGene:EG10015" /db_xref="GeneID:946992" CDS complement(2641831..2642844) /gene="rodZ" /locus_tag="b2516" /gene_synonym="ECK2512; JW2500; yfgA" /function="putative membrane; Not classified" /note="putative membrane protein" /codon_start=1 /transl_table=11 /product="MreB assembly cytoskeletal protein" /protein_id="NP_417011.1" /db_xref="GI:16130441" /db_xref="ASAP:ABE-0008283" /db_xref="UniProtKB/Swiss-Prot:P27434" /db_xref="EcoGene:EG10015" /db_xref="GeneID:946992" /translation="MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTV RDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELLPGLEKQAPLRAAKVAPMQSFSL GKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDRKAQQEEITTMADQSSAELSSNSEQ GQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANV DTAATPAPTAATTPDGAAPLPTDQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLF SGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQS PAQ" gene complement(2643129..2644283) /gene="rlmN" /locus_tag="b2517" /gene_synonym="ECK2513; JW2501; yfgB" /db_xref="EcoGene:EG12401" /db_xref="GeneID:946249" CDS complement(2643129..2644283) /gene="rlmN" /locus_tag="b2517" /gene_synonym="ECK2513; JW2501; yfgB" /function="enzyme; rRNA modification" /codon_start=1 /transl_table=11 /product="dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent" /protein_id="NP_417012.1" /db_xref="GI:16130442" /db_xref="ASAP:ABE-0008287" /db_xref="UniProtKB/Swiss-Prot:P36979" /db_xref="EcoGene:EG12401" /db_xref="GeneID:946249" /translation="MSEQLVTPENVTTKDGKINLLDLNRQQMREFFKDLGEKPFRADQ VMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQ RVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG AAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPA LDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVT IEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVL MSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEAIDIKAV" gene complement(2644433..2644864) /gene="ndk" /locus_tag="b2518" /gene_synonym="ECK2514; JW2502" /db_xref="EcoGene:EG10650" /db_xref="GeneID:945611" CDS complement(2644433..2644864) /gene="ndk" /locus_tag="b2518" /gene_synonym="ECK2514; JW2502" /EC_number="2.7.4.6" /function="enzyme; Purine ribonucleotide biosynthesis" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion; GO:0009152 - purine ribonucleotide biosynthetic process" /note="nucleoside diphosphate kinase" /codon_start=1 /transl_table=11 /product="multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase" /protein_id="NP_417013.1" /db_xref="GI:16130443" /db_xref="ASAP:ABE-0008291" /db_xref="UniProtKB/Swiss-Prot:P0A763" /db_xref="EcoGene:EG10650" /db_xref="GeneID:945611" /translation="MAIERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTV EQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGT LRADYADSLTENGTHGSDSVESAAREIAYFFGEGEVCPRTR" gene complement(2645013..2647325) /gene="pbpC" /locus_tag="b2519" /gene_synonym="ECK2515; JW2503; yfgN" /db_xref="EcoGene:EG14210" /db_xref="GeneID:947152" CDS complement(2645013..2647325) /gene="pbpC" /locus_tag="b2519" /gene_synonym="ECK2515; JW2503; yfgN" /EC_number="2.4.1.-" /function="enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /note="penicillin binding protein 1C (PBP 1C)" /codon_start=1 /transl_table=11 /product="penicillin-insensitive murein repair transglycosylase; inactive transpeptidase domain protein" /protein_id="NP_417014.1" /db_xref="GI:16130444" /db_xref="ASAP:ABE-0008294" /db_xref="UniProtKB/Swiss-Prot:P76577" /db_xref="EcoGene:EG14210" /db_xref="GeneID:947152" /translation="MPRLLTKRGCWITLAAAPFLLFLAAWGADKLWPLPLHEVNPARV VVAQDGTPLWRFADADGIWRYPVTIEDVSPRYLEALINYEDRWFWKHPGVNPFSVARA AWQDLTSGRVISGGSTLTMQVARLLDPHPKTFGGKIRQLWRALQLEWHLSKREILTLY LNRAPFGGTLQGIGAASWAYLGKSPANLSYSEAAMLAVLPQAPSRLRPDRWPERAEAA RNKVLERMAVQGVWSREQVKESREEPIWLAPRQMPQLAPLFSRMMLGKSKSDKITTTL DAGLQRRLEELAQNWKGRLPPRSSLAMIVVDHTDMRVRGWVGSVDLNDDSRFGHVDMV NSIRSPGSVLKPFVYGLALDEGLIHPASLLQDVPRRTGDYRPGNFDSGFHGPISMSEA LVRSLNLPAVQVLEAYGPKRFAAKLRNVGLPLYLPNGAAPNLSLILGGAGAKLEDMAA AYTAFARHGKAGKLRLQPDDPLLERPLMSSGAAWIIRRIMADEAQPLPDSALPRVAPL AWKTGTSYGYRDAWAIGVNARYVIGIWTGRPDGTPVVGQFGFASAVPLLNQVNNILLS RSANLPEDPRPNSVTRGVICWPGGQSLPEGDGNCRRRLATWLLDGSQPPTLLLPEQEG INGIRFPIWLDENGKRVAADCPQARQEMINVWPLPLEPWLPASERRAVRLPPASTSCP PYGHDAQLPLQLTGVRDGAIIKRLPGAAEATLPLQSSGGAGERWWFLNGEPLTERGRN VTLHLTDKGDYQLLVMDDVGQIATVKFVMQ" gene complement(2647326..2652287) /gene="yfhM" /locus_tag="b2520" /gene_synonym="ECK2516; JW2504" /db_xref="EcoGene:EG13394" /db_xref="GeneID:947302" CDS complement(2647326..2652287) /gene="yfhM" /locus_tag="b2520" /gene_synonym="ECK2516; JW2504" /codon_start=1 /transl_table=11 /product="bacterial alpha2-macroglobulin colonization factor ECAM; anti-host protease defense factor; periplasmic inner membrane-anchored lipoprotein" /protein_id="NP_417015.1" /db_xref="GI:16130445" /db_xref="ASAP:ABE-0008296" /db_xref="UniProtKB/Swiss-Prot:P76578" /db_xref="EcoGene:EG13394" /db_xref="GeneID:947302" /translation="MKKLRVAACMLMLALAGCDNNDNAPTAVKKDAPSEVTKAASSEN ASSAKLSVPERQKLAQQSAGKVLTLLDLSEVQLDGAATLVLTFSIPLDPDQDFSRVIH VVDKKSGKVDGAWELSDNLKELRLRHLEPKRDLIVTIGKEVKALNNATFSKDYEKTIT TRDIQPSVGFASRGSLLPGKVVEGLPVMALNVNNVDVNFFRVKPESLPAFISQWEYRN SLANWQSDKLLQMADLVYTGRFDLNPARNTREKLLLPLGDIKPLQQAGVYLAVMNQAG RYDYSNPATLFTLSDIGVSAHRYHNRLDIFTQSLENGAAQQGIEVSLLNEKGQTLTQA TSDAQGHVQLENDKNAALLLARKDGQTTLLDLKLPALDLAEFNIAGAPGYSKQFFMFG PRDLYRPGETVILNGLLRDADGKALPNQPIKLDVIKPDGQVLRSVVSQPENGLYHFTW PLDSNAATGMWHIRANTGDNQYRMWDFHVEDFMPERMALNLTGEKTPLTPKDEVKFSV VGYYLYGAPANGNTLQGQLFLRPLREAVSALPGFEFGDIAAENLSRTLDEVQLTLDDK GRGEVSTESQWKETHSPLQVIFQGSLLESGGRPVTRRAEQAIWPADALPGIRPQFASK SVYDYRTDSTVKQPIVDEGSNAAFDIVYSDAQGVKKAVSGLQVRLIRERRDYYWNWSE DEGWQSQFDQKDLIENEQTLDLKADETGKVSFPVEWGAYRLEVKAPNEAVSSVRFWAG YSWQDNSDGSGAVRPDRVTLKLDKASYRPGDTIKLHIAAPTAGKGYAMVESSEGPLWW QEIDVRAQGLDLTIPVDKTWNRHDLYLSTLVVRPGDKSRSATPKRAVGVLHLPLGDEN RRLDLALETPAKMRPNQPLTVKIKASTKNGEKPKQVNVLVSAVDSGVLNITDYVTPDP WQAFFGQKRYGADIYDIYGQVIEGQGRLAALRFGGDGDELKRGGKPPVNHVNIVVQQA LPVTLNEQGEGSVTLPIGDFNGELRVMAQAWTADDFGSNESKVIVAAPVIAELNMPRF MASGDTSRLTLDITNLTDKPQKLNVALTASGLLELVSDSPAAVELAPGVRTTLFIPVR ALPGYGDGEIQATISGLALPGETVADQHKQWKIGVRPAFPAQTVNYGTALQPGETWAI PADGLQNFSPVTLEGQLLLSGKPPLNIARYIKELKAYPYGCLEQTASGLFPSLYTNAA QLQALGIKGDSDEKRRASVDIGISRLLQMQRDNGGFALWDKNGDEEYWLTAYVMDFLV RAGEQGYSVPTDAINRGNERLLRYLQDPGMMSIPYADNLKASKFAVQSYAALVLARQQ KAPLGALREIWEHRADAASGLPLLQLGVALKTMGDATRGEEAIALALKTPRNSDERIW LGDYGSSLRDNALMLSLLEENKLLPDEQYTLLNTLSQQAFGERWLSTQESNALFLAAR TIQDLPGKWQAQTSFSAEQLTGEKAQNSNLNSDQLVTLQVSNSGDQPLWLRMDASGYP QSAPLPANNVLQIERHILGTDGKSKSLDSLRSGDLVLVWLQVKASNSVPDALVVDLLP AGLELENQNLANGSASLEQSGGEVQNLLNQMQQASIKHIEFRDDRFVAAVAVDEYQPV TLVYLARAVTPGTYQVPQPMVESMYVPQWRATGAAEDLLIVRP" gene 2652494..2653339 /gene="sseA" /locus_tag="b2521" /gene_synonym="ECK2517; JW2505" /db_xref="EcoGene:EG11600" /db_xref="GeneID:946993" CDS 2652494..2653339 /gene="sseA" /locus_tag="b2521" /gene_synonym="ECK2517; JW2505" /EC_number="2.8.1.2" /function="putative enzyme; Not classified" /GO_process="GO:0006790 - sulfur metabolic process" /note="putative thiosulfate sulfurtransferase" /codon_start=1 /transl_table=11 /product="3-mercaptopyruvate sulfurtransferase" /protein_id="NP_417016.4" /db_xref="GI:90111451" /db_xref="ASAP:ABE-0008299" /db_xref="UniProtKB/Swiss-Prot:P31142" /db_xref="EcoGene:EG11600" /db_xref="GeneID:946993" /translation="MSTTWFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLN GHIPGAVFFDIEALSDHTSPLPHMLPRPETFAVAMRELGVNQDKHLIVYDEGNLFSAP RAWWMLRTFGVEKVSILGGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVKVTDV LLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDE LDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARADLP VEPVK" gene 2653855..2654158 /gene="ryfA" /locus_tag="b4440" /gene_synonym="ECK2518; JWR0244; PAIR3b; tp1" /db_xref="EcoGene:EG31154" /db_xref="GeneID:2847714" ncRNA 2653855..2654158 /ncRNA_class="other" /gene="ryfA" /locus_tag="b4440" /gene_synonym="ECK2518; JWR0244; PAIR3b; tp1" /product="novel sRNA, function unknown" /note="identified in a large scale screen" /db_xref="ASAP:ABE-0047260" /db_xref="EcoGene:EG31154" /db_xref="GeneID:2847714" gene complement(2654157..2654933) /gene="sseB" /locus_tag="b2522" /gene_synonym="ECK2519; JW5404" /db_xref="EcoGene:EG11601" /db_xref="GeneID:946994" CDS complement(2654157..2654933) /gene="sseB" /locus_tag="b2522" /gene_synonym="ECK2519; JW5404" /function="phenotype; Not classified" /GO_process="GO:0006790 - sulfur metabolic process" /note="enhanced serine sensitivity" /codon_start=1 /transl_table=11 /product="rhodanase-like enzyme, sulfur transfer from thiosulfate" /protein_id="NP_417017.4" /db_xref="GI:90111452" /db_xref="ASAP:ABE-0008301" /db_xref="UniProtKB/Swiss-Prot:P0AFZ1" /db_xref="EcoGene:EG11601" /db_xref="GeneID:946994" /translation="MSETKNELEDLLEKAATEPAHRPAFFRTLLESTVWVPGTAAQGE AVVEDSALDLQHWEKEDGTSVIPFFTSLEALQQAVEDEQAFVVMPVRTLFEMTLGETL FLNAKLPTGKEFMPREISLLIGEEGNPLSSQEILEGGESLILSEVAEPPAQMIDSLTT LFKTIKPVKRAFICSIKENEEAQPNLLIGIEADGDIEEIIQATGSVATDTLPGDEPID ICQVKKGEKGISHFITEHIAPFYERRWGGFLRDFKQNRII" repeat_region 2654970..2655066 /note="RIP183 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(2655075..2656358) /gene="pepB" /locus_tag="b2523" /gene_synonym="ECK2520; JW2507; yfhI" /db_xref="EcoGene:EG12310" /db_xref="GeneID:948766" CDS complement(2655075..2656358) /gene="pepB" /locus_tag="b2523" /gene_synonym="ECK2520; JW2507; yfhI" /EC_number="3.4.11.23" /function="putative enzyme; Not classified" /note="putative peptidase" /codon_start=1 /transl_table=11 /product="aminopeptidase B" /protein_id="NP_417018.4" /db_xref="GI:90111453" /db_xref="ASAP:ABE-0008305" /db_xref="UniProtKB/Swiss-Prot:P37095" /db_xref="EcoGene:EG12310" /db_xref="GeneID:948766" /translation="MTEAMKITLSTQPADARWGEKATYSINNDGITLHLNGADDLGLI QRAARKIDGLGIKHVQLSGEGWDADRCWAFWQGYKAPKGTRKVVWPDLDDAQRQELDN RLMIIDWVRDTINAPAEELGPSQLAQRAVDLISNVAGDRVTYRITKGEDLREQGYMGL HTVGRGSERSPVLLALDYNPTGDKEAPVYACLVGKGITFDSGGYSIKQTAFMDSMKSD MGGAATVTGALAFAITRGLNKRVKLFLCCADNLISGNAFKLGDIITYRNGKKVEVMNT DAEGRLVLADGLIDASAQKPEMIIDAATLTGAAKTALGNDYHALFSFDDALAGRLLAS AAQENEPFWRLPLAEFHRSQLPSNFAELNNTGSAAYPAGASTAAGFLSHFVENYQQGW LHIDCSATYRKAPVEQWSAGATGLGVRTIANLLTA" gene complement(2656536..2656736) /gene="iscX" /locus_tag="b2524" /gene_synonym="ECK2521; JW2508; yfhJ" /db_xref="EcoGene:EG12311" /db_xref="GeneID:945196" CDS complement(2656536..2656736) /gene="iscX" /locus_tag="b2524" /gene_synonym="ECK2521; JW2508; yfhJ" /GO_process="GO:0006457 - protein folding" /codon_start=1 /transl_table=11 /product="Fe(2+) donor and activity modulator for cysteine desulfurase" /protein_id="NP_417019.1" /db_xref="GI:16130449" /db_xref="ASAP:ABE-0008309" /db_xref="UniProtKB/Swiss-Prot:P0C0L9" /db_xref="EcoGene:EG12311" /db_xref="GeneID:945196" /translation="MGLKWTDSREIGEALYDAYPDLDPKTVRFTDMHQWICDLEDFDD DPQASNEKILEAILLVWLDEAE" gene complement(2656748..2657083) /gene="fdx" /locus_tag="b2525" /gene_synonym="ECK2522; JW2509" /db_xref="EcoGene:EG11328" /db_xref="GeneID:947160" CDS complement(2656748..2657083) /gene="fdx" /locus_tag="b2525" /gene_synonym="ECK2522; JW2509" /function="carrier; Energy metabolism, carbon: Electron transport" /GO_function="GO:0009055 - electron carrier activity" /note="[2FE-2S] ferredoxin, electron carrer protein" /codon_start=1 /transl_table=11 /product="[2Fe-2S] ferredoxin" /protein_id="NP_417020.1" /db_xref="GI:16130450" /db_xref="ASAP:ABE-0008311" /db_xref="UniProtKB/Swiss-Prot:P0A9R4" /db_xref="EcoGene:EG11328" /db_xref="GeneID:947160" /translation="MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEK SCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLSCQARVTDEDLVVEIPR YTINHAREH" gene complement(2657085..2658935) /gene="hscA" /locus_tag="b2526" /gene_synonym="ECK2523; hsc; JW2510" /db_xref="EcoGene:EG12130" /db_xref="GeneID:944885" CDS complement(2657085..2658935) /gene="hscA" /locus_tag="b2526" /gene_synonym="ECK2523; hsc; JW2510" /function="factor; Chaperones" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006457 - protein folding" /note="DnaK-homologue chaperone Hsc66" /codon_start=1 /transl_table=11 /product="DnaK-like molecular chaperone specific for IscU" /protein_id="NP_417021.1" /db_xref="GI:16130451" /db_xref="ASAP:ABE-0008315" /db_xref="UniProtKB/Swiss-Prot:P0A6Z1" /db_xref="EcoGene:EG12130" /db_xref="GeneID:944885" /translation="MALLQISEPGLSAAPHQRRLAAGIDLGTTNSLVATVRSGQAETL ADHEGRHLLPSVVHYQQQGHSVGYDARTNAALDTANTISSVKRLMGRSLADIQQRYPH LPYQFQASENGLPMIETAAGLLNPVRVSADILKALAARATEALAGELDGVVITVPAYF DDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISIL RLSRGVFEVLATGGDSALGGDDFDHLLADYIREQAGIPDRSDNRVQRELLDAAIAAKI ALSDADSVTVNVAGWQGEISREQFNELIAPLVKRTLLACRRALKDAGVEADEVLEVVM VGGSTRVPLVRERVGEFFGRPPLTSIDPDKVVAIGAAIQADILVGNKPDSEMLLLDVI PLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRS LARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAA AHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKGHSVDEV" gene complement(2658952..2659467) /gene="hscB" /locus_tag="b2527" /gene_synonym="ECK2524; JW2511; yfhE" /db_xref="EcoGene:EG12131" /db_xref="GeneID:946995" CDS complement(2658952..2659467) /gene="hscB" /locus_tag="b2527" /gene_synonym="ECK2524; JW2511; yfhE" /function="factor; Chaperones" /GO_process="GO:0006457 - protein folding" /codon_start=1 /transl_table=11 /product="HscA co-chaperone, J domain-containing protein Hsc56; IscU-specific chaperone HscAB" /protein_id="NP_417022.1" /db_xref="GI:16130452" /db_xref="ASAP:ABE-0008317" /db_xref="UniProtKB/Swiss-Prot:P0A6L9" /db_xref="EcoGene:EG12131" /db_xref="GeneID:946995" /translation="MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQ LAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREEL DEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTVRKLRFLDKLRSS AEQLEEKLLDF" gene complement(2659563..2659886) /gene="iscA" /locus_tag="b2528" /gene_synonym="ECK2525; JW2512; yfhF" /db_xref="EcoGene:EG12132" /db_xref="GeneID:946999" CDS complement(2659563..2659886) /gene="iscA" /locus_tag="b2528" /gene_synonym="ECK2525; JW2512; yfhF" /function="putative regulator; Not classified" /GO_process="GO:0006457 - protein folding" /codon_start=1 /transl_table=11 /product="FeS cluster assembly protein" /protein_id="NP_417023.1" /db_xref="GI:16130453" /db_xref="ASAP:ABE-0008319" /db_xref="UniProtKB/Swiss-Prot:P0AAC8" /db_xref="EcoGene:EG12132" /db_xref="GeneID:946999" /translation="MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEF VDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCG ESFHV" gene complement(2659903..2660289) /gene="iscU" /locus_tag="b2529" /gene_synonym="ECK2526; hsm-5; JW2513; miaC; nifU; yfhN" /db_xref="EcoGene:EG13395" /db_xref="GeneID:947002" CDS complement(2659903..2660289) /gene="iscU" /locus_tag="b2529" /gene_synonym="ECK2526; hsm-5; JW2513; miaC; nifU; yfhN" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster assembly scaffold protein" /protein_id="NP_417024.1" /db_xref="GI:16130454" /db_xref="ASAP:ABE-0008321" /db_xref="UniProtKB/Swiss-Prot:P0ACD4" /db_xref="EcoGene:EG13395" /db_xref="GeneID:947002" /translation="MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQ IKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPV KIHCSILAEDAIKAAIADYKSKREAK" gene complement(2660317..2661531) /gene="iscS" /locus_tag="b2530" /gene_synonym="ECK2527; JW2514; nuvC; yfhO; yzzO" /db_xref="EcoGene:EG12677" /db_xref="GeneID:947004" CDS complement(2660317..2661531) /gene="iscS" /locus_tag="b2530" /gene_synonym="ECK2527; JW2514; nuvC; yfhO; yzzO" /EC_number="2.8.1.7" /function="enzyme; tRNA modification" /experiment="N-terminus verified by Edman degradation: PMID 9298646" /GO_process="GO:0009451 - RNA modification" /note="cysteine desulfurase; cysteine desulfurase (tRNA sulfurtransferase) PLP-dependent" /codon_start=1 /transl_table=11 /product="cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent" /protein_id="YP_026169.1" /db_xref="GI:49176235" /db_xref="ASAP:ABE-0008324" /db_xref="UniProtKB/Swiss-Prot:P0A6B7" /db_xref="EcoGene:EG12677" /db_xref="GeneID:947004" /translation="MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFG WQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKT EHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVV QDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYV RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNR LWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSASLE PSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQ GVDLNSIEWAHH" gene complement(2661643..2662131) /gene="iscR" /locus_tag="b2531" /gene_synonym="ECK2528; JW2515; yfhP" /db_xref="EcoGene:EG13397" /db_xref="GeneID:945279" CDS complement(2661643..2662131) /gene="iscR" /locus_tag="b2531" /gene_synonym="ECK2528; JW2515; yfhP" /function="regulation of Fe-S cluster assembly genes" /GO_process="GO:0006412 - translation" /note="Fe-S cluster-containing transcription factor; transcriptional repressor of iscRSUA operon" /codon_start=1 /transl_table=11 /product="isc operon transcriptional repressor; suf operon transcriptional activator; oxidative stress- and iron starvation-inducible; autorepressor" /protein_id="NP_417026.1" /db_xref="GI:16130456" /db_xref="ASAP:ABE-0008326" /db_xref="UniProtKB/Swiss-Prot:P0AGK8" /db_xref="EcoGene:EG13397" /db_xref="GeneID:945279" /translation="MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQ LFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQGGD KCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRTRTQDAIDVKL RA" repeat_region 2662309..2662574 /note="REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences" gene complement(2662583..2663323) /gene="trmJ" /locus_tag="b2532" /gene_synonym="ECK2529; JW2516; yfhQ" /db_xref="EcoGene:EG13452" /db_xref="GeneID:948610" CDS complement(2662583..2663323) /gene="trmJ" /locus_tag="b2532" /gene_synonym="ECK2529; JW2516; yfhQ" /function="enzyme; tRNA modification" /codon_start=1 /transl_table=11 /product="tRNA mC32,mU32 2'-O-methyltransferase, SAM-dependent" /protein_id="NP_417027.1" /db_xref="GI:16130457" /db_xref="ASAP:ABE-0008332" /db_xref="UniProtKB/Swiss-Prot:P0AE01" /db_xref="EcoGene:EG13452" /db_xref="GeneID:948610" /translation="MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDS QAIALAAGASDVIGNAHIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA EAANTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAW LATQENGEQVEHEETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTR ARPESQELNILRGILASIEQQNKGNKAE" gene 2663442..2664245 /gene="suhB" /locus_tag="b2533" /gene_synonym="ECK2530; JW2517; ssyA" /db_xref="EcoGene:EG10983" /db_xref="GeneID:947285" CDS 2663442..2664245 /gene="suhB" /locus_tag="b2533" /gene_synonym="ECK2530; JW2517; ssyA" /EC_number="3.1.3.25" /function="phenotype; Global regulatory functions" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006350 - transcription" /note="inositol-1-monophosphatase" /codon_start=1 /transl_table=11 /product="inositol monophosphatase" /protein_id="NP_417028.1" /db_xref="GI:16130458" /db_xref="ASAP:ABE-0008337" /db_xref="UniProtKB/Swiss-Prot:P0ADG4" /db_xref="EcoGene:EG10983" /db_xref="GeneID:947285" /translation="MHPMLNIAVRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVD KAAEAVIIDTIRKSYPQHTIITEESGELEGTDQDVQWVIDPLDGTTNFIKRLPHFAVS IAVRIKGRTEVAVVYDPMRNELFTATRGQGAQLNGYRLRGSTARDLDGTILATGFPFK AKQYATTYINIVGKLFNECADFRRTGSAALDLAYVAAGRVDGFFEIGLRPWDFAAGEL LVREAGGIVSDFTGGHNYMLTGNIVAGNPRVVKAMLANMRDELSDALKR" gene 2664390..2665244 /gene="yfhR" /locus_tag="b2534" /gene_synonym="ECK2531; JW2518" /db_xref="EcoGene:EG13453" /db_xref="GeneID:945059" CDS 2664390..2665244 /gene="yfhR" /locus_tag="b2534" /gene_synonym="ECK2531; JW2518" /function="putative enzyme; Not classified" /note="putative enzyme (3.4.-)" /codon_start=1 /transl_table=11 /product="putative S9 family prolyl oligopeptidase" /protein_id="NP_417029.4" /db_xref="GI:226524738" /db_xref="ASAP:ABE-0008340" /db_xref="UniProtKB/Swiss-Prot:P77538" /db_xref="EcoGene:EG13453" /db_xref="GeneID:945059" /translation="MALPVNKRVPKILFILFVVAFCVYLVPRVAINFFYYPDDKIYGP DPWSAESVEFTAKDGTRLQGWFIPSSTGPADNAIATIIHAHGNAGNMSAHWPLVSWLP ERNFNVFMFDYRGFGKSKGTPSQAGLLDDTQSAINVVRHRSDVNPQRLVLFGQSIGGA NILDVIGRGDREGIRAVILDSTFASYATIANQMIPGSGYLLDESYSGENYIASVSPIP LLLIHGKADHVIPWQHSEKLYSLAKEPKRLILIPDGEHIDAFSDRHGDVYREQMVDFI LSALNPQN" gene 2665435..2666715 /gene="csiE" /locus_tag="b2535" /gene_synonym="csi-16; ECK2532; JW5878" /db_xref="EcoGene:EG13418" /db_xref="GeneID:947009" CDS 2665435..2666715 /gene="csiE" /locus_tag="b2535" /gene_synonym="csi-16; ECK2532; JW5878" /codon_start=1 /transl_table=11 /product="stationary phase inducible protein" /protein_id="NP_417030.2" /db_xref="GI:90111454" /db_xref="ASAP:ABE-0008346" /db_xref="UniProtKB/Swiss-Prot:P54901" /db_xref="EcoGene:EG13418" /db_xref="GeneID:947009" /translation="MMPTLAPPSVLSAPQRRCQILLTLFQPGLTATMATFSELNGVDD DIASLDISETGREILRYHQLTLTTGYDGSYRVEGTVLNQRLCLFHWLRRGFRLCPSFI TSQFTPALKSELKRRGIARNFYDDTNLQALVNLCSRRLQKRFESRDIHFLCLYLQYCL LQHHAGITPQFNPLQRRWAESCLEFQVAQEIGRHWQRRALQPVPPDEPLFMALLFSML RVPDPLRDAHQRDRQLRQSIKRLVNHFRELGNVRFYDEQGLCDQLYTHLAQALNRSLF AIGIDNTLPEEFARLYPRLVRTTRAALAGFESEYGVHLSDEESGLVAVIFGAWLMQEN DLHEKQIILLTGNDSEREAQIEQQLRELTLLPLNIKHMSVKAFLQTGAPRGAALIIAP YTMPLPLFSPPLIYTDLTLTTHQQEQIRKMLESA" gene complement(2666707..2667846) /gene="hcaT" /locus_tag="b2536" /gene_synonym="ECK2533; JW2520; yfhS" /db_xref="EcoGene:EG13454" /db_xref="GeneID:947007" CDS complement(2666707..2667846) /gene="hcaT" /locus_tag="b2536" /gene_synonym="ECK2533; JW2520; yfhS" /function="transport; Degradation of small molecules: Carbon compounds" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="MFS (major facilitator superfamily) transporter" /codon_start=1 /transl_table=11 /product="putative 3-phenylpropionic transporter" /protein_id="NP_417031.1" /db_xref="GI:16130461" /db_xref="ASAP:ABE-0008348" /db_xref="UniProtKB/Swiss-Prot:Q47142" /db_xref="EcoGene:EG13454" /db_xref="GeneID:947007" /translation="MVLQSTRWLALGYFTYFFSYGIFLPFWSVWLKGIGLTPETIGLL LGAGLVARFLGSLLIAPRVSDPSRLISALRVLALLTLLFAVAFWAGAHVAWLMLVMIG FNLFFSPLVPLTDALANTWQKQFPLDYGKVRLWGSVAFVIGSALTGKLVTMFDYRVIL ALLTLGVASMLLGFLIRPTIQPQGASRQQESTGWSAWLALVRQNWRFLACVCLLQGAH AAYYGFSAIYWQAAGYSASAVGYLWSLGVVAEVIIFALSNKLFRRCSARDMLLISAIC GVVRWGIMGATTALPWLIVVQILHCGTFTVCHLAAMRYIAARQGSEVIRLQAVYSAVA MGGSIAIMTVFAGFLYQYLGHGVFWVMALVALPAMFLRPKVVPSC" gene complement(2668006..2668896) /gene="hcaR" /locus_tag="b2537" /gene_synonym="ECK2534; JW2521; phdR; yfhT" /db_xref="EcoGene:EG13455" /db_xref="GeneID:947000" CDS complement(2668006..2668896) /gene="hcaR" /locus_tag="b2537" /gene_synonym="ECK2534; JW2521; phdR; yfhT" /function="regulator; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006350 - transcription" /note="transcriptional activator of hca cluster; completely contained in another CDS" /codon_start=1 /transl_table=11 /product="hca operon transcriptional regulator" /protein_id="NP_417032.1" /db_xref="GI:16130462" /db_xref="ASAP:ABE-0008351" /db_xref="UniProtKB/Swiss-Prot:Q47141" /db_xref="EcoGene:EG13455" /db_xref="GeneID:947000" /translation="MELRHLRYFVAVAQALNFTRAAEKLHTSQPSLSSQIRDLENCVG VPLLVRDKRKVALTAAGECFLQDALAILEQAENAKLRARKIVQEDRQLTIGFVPSAEV NLLPKVLPMFRLRQPDTLIELVSLITTQQEEKIRRGELDVGLMRHPVYSPEIDYLELF DEPLVVVLPVDHPLAHEKEITAAQLDGVNFVSTDPVYSGSLAPIVKAWFAQENSQPNI VQVATNILVTMNLVGMGLGVTLIPGYMNNFNTGQVVFRPIAGNVPSIALLMAWKKGEM KPALRDFIAIVQERLASVTA" gene complement(2668006..2668071) /gene="iroK" /locus_tag="b4706" /gene_synonym="ECK4518" /db_xref="EcoGene:EG14501" /db_xref="GeneID:14678510" CDS complement(2668006..2668071) /gene="iroK" /locus_tag="b4706" /gene_synonym="ECK4518" /note="completely contained in another CDS" /codon_start=1 /transl_table=11 /product="3-hydroxypropionic acid resistance peptide" /protein_id="YP_008592385.1" /db_xref="GI:556503836" /db_xref="EcoGene:EG14501" /db_xref="GeneID:14678510" /translation="MKPALRDFIAIVQERLASVTA" gene 2669032..2670393 /gene="hcaE" /locus_tag="b2538" /gene_synonym="digA; ECK2535; hcaA; hcaA1; JW2522; phdC1; yfhU" /db_xref="EcoGene:EG13456" /db_xref="GeneID:946998" CDS 2669032..2670393 /gene="hcaE" /locus_tag="b2538" /gene_synonym="digA; ECK2535; hcaA; hcaA1; JW2522; phdC1; yfhU" /EC_number="1.14.12.19" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="3-phenylpropionate dioxygenase, large (alpha) subunit" /protein_id="NP_417033.1" /db_xref="GI:16130463" /db_xref="ASAP:ABE-0008355" /db_xref="UniProtKB/Swiss-Prot:P0ABR5" /db_xref="EcoGene:EG13456" /db_xref="GeneID:946998" /translation="MTTPSDLNIYQLIDTQNGRVTPRIYTDPDIYQLELERIFGRCWL FLAHESQIPKPGDFFNTYMGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNTRA FTCPYHGWSYGINGELIDVPLEPRAYPQGLCKSHWGLNEVPCVESYKGLIFGNWDTSA PGLRDYLGDIAWYLDGMLDRREGGTEIVGGVQKWVINCNWKFPAEQFASDQYHALFSH ASAVQVLGAKDDGSDKRLGDGQTARPVWETAKDALQFGQDGHGSGFFFTEKPDANVWV DGAVSSYYRETYAEAEQRLGEVRALRLAGHNNIFPTLSWLNGTATLRVWHPRGPDQVE VWAFCITDKAASDEVKAAFENSATRAFGPAGFLEQDDSENWCEIQKLLKGHRARNSKL CLEMGLGQEKRRDDGIPGITNYIFSETAARGMYQRWADLLSSESWQEVLDKTAAYQQE VMK" gene 2670390..2670908 /gene="hcaF" /locus_tag="b2539" /gene_synonym="digB; ECK2536; hcaA; hcaA2; hcaB; JW2523; phdC2; yfhV" /db_xref="EcoGene:EG13457" /db_xref="GeneID:946997" CDS 2670390..2670908 /gene="hcaF" /locus_tag="b2539" /gene_synonym="digB; ECK2536; hcaA; hcaA2; hcaB; JW2523; phdC2; yfhV" /EC_number="1.14.12.19" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="small terminal subunit of phenylpropionate dioxygenase" /codon_start=1 /transl_table=11 /product="3-phenylpropionate dioxygenase, small (beta) subunit" /protein_id="NP_417034.1" /db_xref="GI:16130464" /db_xref="ASAP:ABE-0008357" /db_xref="UniProtKB/Swiss-Prot:Q47140" /db_xref="EcoGene:EG13457" /db_xref="GeneID:946997" /translation="MSAQVSLELHHRISQFLFHEASLLDDWKFRDWLAQLDEEIRYTM RTTVNAQTRDRRKGVQPPTTWIFNDTKDQLERRIARLETGMAWAEEPPSRTRHLISNC QISETDIPNVFAVRVNYLLYRAQKERDETFYVGTRFDKVRRLEDDNWRLLERDIVLDQ AVITSHNLSVLF" gene 2670908..2671228 /gene="hcaC" /locus_tag="b2540" /gene_synonym="ECK2537; hcaA3; JW2524; phdB; yfhW" /db_xref="EcoGene:EG13458" /db_xref="GeneID:947015" CDS 2670908..2671228 /gene="hcaC" /locus_tag="b2540" /gene_synonym="ECK2537; hcaA3; JW2524; phdB; yfhW" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="ferredoxin subunit of phenylpropionate dioxygenase" /codon_start=1 /transl_table=11 /product="3-phenylpropionate dioxygenase, ferredoxin subunit" /protein_id="NP_417035.1" /db_xref="GI:16130465" /db_xref="ASAP:ABE-0008359" /db_xref="UniProtKB/Swiss-Prot:P0ABW0" /db_xref="EcoGene:EG13458" /db_xref="GeneID:947015" /translation="MNRIYACPVADVPEGEALRIDTSPVIALFNVGGEFYAINDRCSH GNASMSEGYLEDDATVECPLHAASFCLKTGKALCLPATDPLTTYPVHVEGGDIFIDLP EAQP" gene 2671225..2672037 /gene="hcaB" /locus_tag="b2541" /gene_synonym="ECK2538; JW2525; phdD; yfhX" /db_xref="EcoGene:EG13459" /db_xref="GeneID:945346" CDS 2671225..2672037 /gene="hcaB" /locus_tag="b2541" /gene_synonym="ECK2538; JW2525; phdD; yfhX" /EC_number="1.3.1.-" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase" /protein_id="NP_417036.1" /db_xref="GI:16130466" /db_xref="ASAP:ABE-0008361" /db_xref="UniProtKB/Swiss-Prot:P0CI31" /db_xref="EcoGene:EG13459" /db_xref="GeneID:945346" /translation="MSDLHNESIFITGGGSGLGLALVERFIEEGAQVATLELSAAKVA SLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNASLVNTPA ETLETGFHELFNVNVLGYLLGAKACAPALIASEGSMIFTLSNAAWYPGGGGPLYTASK HAATGLIRQLAYELAPKVRVNGVGPCGMASDLRGPQALGQSETSIMQSLTPEKIAAIL PLQFFPQPADFTGPYVMLTSRRNNRALSGVMINADAGLAIRGIRHVAAGLDL" gene 2672047..2673249 /gene="hcaD" /locus_tag="b2542" /gene_synonym="ECK2539; hcaA4; JW2526; phdA; yfhY" /db_xref="EcoGene:EG13460" /db_xref="GeneID:945427" CDS 2672047..2673249 /gene="hcaD" /locus_tag="b2542" /gene_synonym="ECK2539; hcaA4; JW2526; phdA; yfhY" /EC_number="1.18.1.3" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="ferredoxin reductase subunit of phenylpropionate dioxygenase" /codon_start=1 /transl_table=11 /product="phenylpropionate dioxygenase, ferredoxin reductase subunit" /protein_id="NP_417037.1" /db_xref="GI:16130467" /db_xref="ASAP:ABE-0008363" /db_xref="UniProtKB/Swiss-Prot:P77650" /db_xref="EcoGene:EG13460" /db_xref="GeneID:945427" /translation="MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYER PPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWD QLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIIGAGTIGLELA ASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKV ELTLQSGETLQADVVIYGIGISANEQLAREANLDTANGIVIDEACRTCDPAIFAGGDV AITRLDNGALHRCESWENANNQAQIAAAAMLGLPLPLLPPPWFWSDQYSDNLQFIGDM RGDDWLCRGNPETQKAIWFNLQNGVLIGAVTLNQGREIRPIRKWIQSGKTFDAKLLID ENIALKSL" gene 2673346..2673768 /gene="yphA" /locus_tag="b2543" /gene_synonym="ECK2540; JW2527" /db_xref="EcoGene:EG13462" /db_xref="GeneID:947365" CDS 2673346..2673768 /gene="yphA" /locus_tag="b2543" /gene_synonym="ECK2540; JW2527" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="DoxX family inner membrane protein" /protein_id="NP_417038.4" /db_xref="GI:145698300" /db_xref="ASAP:ABE-0008365" /db_xref="UniProtKB/Swiss-Prot:P0AD47" /db_xref="EcoGene:EG13462" /db_xref="GeneID:947365" /translation="MNTLRYFDFGAARPVLLLIARIAVVLIFIIFGFPKMMGFDGTVQ YMASLGAPMPMLAAIIAVVMEVPAAILIVLGFFTRPLAVLFIFYTLGTAVIGHHYWDM TGDAVGPNMINFWKNVSIAGAFLLLAITGPGAISLDRR" repeat_region 2673776..2673809 /note="REP185 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2673816..2674688) /gene="yphB" /locus_tag="b2544" /gene_synonym="ECK2541; JW2528" /db_xref="EcoGene:EG13463" /db_xref="GeneID:947017" CDS complement(2673816..2674688) /gene="yphB" /locus_tag="b2544" /gene_synonym="ECK2541; JW2528" /codon_start=1 /transl_table=11 /product="mutarotase superfamily protein, YphB family" /protein_id="NP_417039.1" /db_xref="GI:16130469" /db_xref="ASAP:ABE-0008368" /db_xref="UniProtKB/Swiss-Prot:P76584" /db_xref="EcoGene:EG13463" /db_xref="GeneID:947017" /translation="MTIYTLSHGSLKLDVSDQGGVIEGFWRDTTPLLRPGKKSGVATD ASCFPLVPFANRVSGNRFVWQGREYQLQPNVEWDAHYLHGDGWLGEWQCVSHSDDSLC LVYEHRSGVYHYRVSQAFHLTADTLTVTLSVTNQGAETLPFGTGWHPYFPLSPQTRIQ AQASGYWLEREQWLAGEFCEQLPQELDFNQPAPLPRQWVNNGFAGWNGQARIEQPQEG YAIIMETTPPAPCYFIFVSDPAFDKGYAFDFFCLEPMSHAPDDHHRPEGGDLIALAPG ESTTSEMSLRVEWL" gene complement(2674700..2675761) /gene="yphC" /locus_tag="b2545" /gene_synonym="ECK2542; JW5842" /db_xref="EcoGene:EG13464" /db_xref="GeneID:947019" CDS complement(2674700..2675761) /gene="yphC" /locus_tag="b2545" /gene_synonym="ECK2542; JW5842" /function="putative enzyme; Not classified" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="putative Zn-dependent NAD(P)-binding oxidoreductase" /protein_id="NP_417040.2" /db_xref="GI:90111455" /db_xref="ASAP:ABE-0008370" /db_xref="UniProtKB/Swiss-Prot:P77360" /db_xref="EcoGene:EG13464" /db_xref="GeneID:947019" /translation="MKTMLAAYLPGNSTVDLREVAVPTPGINQVLIKMKSSGICGSDV HYIYHQHRATAAAPDKPLYQGFINGHEPCGQIVAMGQGCRHFKEGDRVLVYHISGCGF CPNCRRGFPISCTGEGKAAYGWQRDGGHAEYLLAEEKDLILLPDALSYEDGAFISCGV GTAYEGILRGEVSGSDNVLVVGLGPVGMMAMMLAKGRGAKRIIGVDMLPERLAMAKQL GVMDHGYLATTEGLPQIIAELTHGGADVALDCSGNAAGRLLALQSTADWGRVVYIGET GKVEFEVSADLMHHQRRIIGSWVTSLFHMEKCAHDLTDWKLWPRNAITHRFSLEQAGD AYALMASGKCGKVVINFPD" gene complement(2675827..2676825) /gene="yphD" /locus_tag="b2546" /gene_synonym="ECK2543; JW2530" /db_xref="EcoGene:EG13465" /db_xref="GeneID:949063" CDS complement(2675827..2676825) /gene="yphD" /locus_tag="b2546" /gene_synonym="ECK2543; JW2530" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport system permease protein" /codon_start=1 /transl_table=11 /product="putative sugar ABC transporter permease" /protein_id="NP_417041.1" /db_xref="GI:16130471" /db_xref="ASAP:ABE-0008373" /db_xref="UniProtKB/Swiss-Prot:P77315" /db_xref="EcoGene:EG13465" /db_xref="GeneID:949063" /translation="MSASSLPLPQGKSVSLKQFVSRHINEIGLLVVIAILYLVFSLNA PGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQFEV PLAVACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPID ENEVLDWLGGQFLGVPVSALIMIVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGIN VRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRG SLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLANILLTQRSSKAKR" gene complement(2676850..2678361) /gene="yphE" /locus_tag="b2547" /gene_synonym="ECK2544; JW2531" /db_xref="EcoGene:EG13466" /db_xref="GeneID:948990" CDS complement(2676850..2678361) /gene="yphE" /locus_tag="b2547" /gene_synonym="ECK2544; JW2531" /function="putative transport; Not classified" /GO_component="GO:0005737 - cytoplasm" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="putative sugar ABC transporter ATPase" /protein_id="NP_417042.1" /db_xref="GI:16130472" /db_xref="ASAP:ABE-0008376" /db_xref="UniProtKB/Swiss-Prot:P77509" /db_xref="EcoGene:EG13466" /db_xref="GeneID:948990" /translation="MFTATEAVPVAKVVAGNKRYPGVVALDNVNFTLNKGEVRALLGK NGAGKSTLIRMLTGSERPDSGDIWIGETRLEGDEATLTRRAAELGVRAVYQELSLVEG LTVAENLCLGQWPRRNGMIDYLQMAQDAQRCLQALGVDVSPEQLVSTLSPAQKQLVEI ARVMKGEPRVVILDEPTSSLASAEVELVISAVKKMSALGVAVIYVSHRMEEIRRIASC ATVMRDGQVAGDVMLENTSTHHIVSLMLGRDHVDIAPVAPQEIVDQAVLEVRALRHKP KLEDISFTLRRGEVLGIAGLLGAGRSELLKAIVGLEEYEQGEIVINGEKITRPDYGDM LKRGIGYTPENRKEAGIIPWLGVDENTVLTNRQKISANGVLQWSTIRRLTEEVMQRMT VKAASSETPIGTLSGGNQQKVVIGRWVYAASQILLLDEPTRGVDIEAKQQIYRIVREL AAEGKSVVFISSEVEELPLVCDRILLLQHGTFSQEFHAPVNVDELMSAILSVH" gene complement(2678384..2679367) /gene="yphF" /locus_tag="b2548" /gene_synonym="ECK2545; JW2532" /db_xref="EcoGene:EG13467" /db_xref="GeneID:947020" CDS complement(2678384..2679367) /gene="yphF" /locus_tag="b2548" /gene_synonym="ECK2545; JW2532" /function="putative regulator; Not classified" /GO_component="GO:0042597 - periplasmic space" /note="putative LACI-type transcriptional regulator" /codon_start=1 /transl_table=11 /product="putative sugar ABC transporter periplasmic binding protein" /protein_id="NP_417043.1" /db_xref="GI:16130473" /db_xref="ASAP:ABE-0008378" /db_xref="UniProtKB/Swiss-Prot:P77269" /db_xref="EcoGene:EG13467" /db_xref="GeneID:947020" /translation="MPTKMRTTRNLLLMATLLGSALFARAAEKEMTIGAIYLDTQGYY AGVRQGVQDAAKDSSVQVQLIETNAQGDISKESTFVDTLVARNVDAIILSAVSENGSS RTVRRASEAGIPVICYNTCINQKGVDKYVSAYLVGDPLEFGKKLGNAAADYFIANKID QPKIAVINCEAFEVCVQRRKGFEEVLKSRVPGAQIVANQEGTVLDKAISVGEKLIIST PDLNAIMGESGGATLGAVKAVRNQNQAGKIAVFGSDMTTEIAQELENNQVLKAVVDIS GKKMGNAVFAQTLKVINKQADGEKVIQVPIDLYTKTEDGKQWLATHVDGLP" gene complement(2679464..2682745) /gene="yphG" /locus_tag="b2549" /gene_synonym="ECK2546; JW5405" /db_xref="EcoGene:EG13468" /db_xref="GeneID:947021" CDS complement(2679464..2682745) /gene="yphG" /locus_tag="b2549" /gene_synonym="ECK2546; JW5405" /codon_start=1 /transl_table=11 /product="DUF4380 domain-containing TPR repeat protein" /protein_id="NP_417044.4" /db_xref="GI:162135907" /db_xref="ASAP:ABE-0008380" /db_xref="UniProtKB/Swiss-Prot:P76585" /db_xref="EcoGene:EG13468" /db_xref="GeneID:947021" /translation="MTPVKVWQERVEIPTYETGPQDIHPMFLENRVYQGSSGAVYPYG VTDTLSEQKTLKSWQAVWLENDYIKVMILPELGGRVHRAWDKVKQRDFVYHNEVIKPA LVGLLGPWISGGIEFNWPQHHRPTTFMPVDFTLEAHEDGAQTVWVGETEPMHGLQVMT GFTLRPDRAALEIASRVYNGNATPRHFLWWANPAVKGGEGHQSVFPPDVTAVFDHGKR AVSAFPIATGTYYKVDYSAGVDISRYKNVPVPTSYMAEKSQYDFVGAWCHDEDGGLLH VANHHIAPGKKQWSWGHSEFGQAWDKSLTDNNGPYIELMTGIFADNQPDFTWLDAYEE KRFEQYFLPYHSLGMVQNASRDAVIKLQRSKRGIEWGLYAISPLNGYRLAIREIGKCN ALLDDAVALMPATAIQGVLHGINPERLTIELSDADGNIVLSYQEHQPQALPLPDVAKA PLAAQDITSTDEAWFIGQHLEQYHHASRSPFDYYLRGVALDPLDYRCNLALAMLEYNR ADFPQAVAYATQALKRAHALNKNPQCGQASLIRASAYERQGQYQQAEEDFWRAVWSGN SKAGGYYGLARLAARNGNFDAGLDFCQQSLRACPTNQEVLCLHNLLLVLSGRQDNARV QREKLLRDYPLNATLWWLNWFDGRSESALAQWRGLCQGRDVNALMTAGQLINWGMPTL AAEMLNALDCQRTLPLYLQASLLPKAERGELVAKAIDVFPQFVRFPNTLEEVAALESI EECWFARHLLACFYYNKRSYNKAIAFWQRCVEMSPEFADGWRGLAIHAWNKQHDYELA ARYLDNAYQLAPQDARLLFERDLLDKLSGATPEKRLARLENNLEIALKRDDMTAELLN LWHLTGQADKAADILATRKFHPWEGGEGKVTSQFILNQLLRAWQHLDARQPQQACELL HAALHYPENLSEGRLPGQTDNDIWFWQAICANAQGDETEATRCLRLAATGDRTINIHS YYNDQPVDYLFWQGMALRLLGEQQTAQQLFSEMKQWAQEMAKTSIEADFFAVSQPDLL SLYGDLQQQHKEKCLMVAMLASAGLGEVAQYESARAELTAINPAWPKAALFTTVMPFI FNRVH" gene 2682863..2684056 /gene="yphH" /locus_tag="b2550" /gene_synonym="ECK2547; JW5406" /db_xref="EcoGene:EG13469" /db_xref="GeneID:947023" CDS 2682863..2684056 /gene="yphH" /locus_tag="b2550" /gene_synonym="ECK2547; JW5406" /function="putative regulator; Not classified" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent" /note="putative NAGC-like transcriptional regulator" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator" /protein_id="NP_417045.4" /db_xref="GI:90111457" /db_xref="ASAP:ABE-0008384" /db_xref="UniProtKB/Swiss-Prot:P76586" /db_xref="EcoGene:EG13469" /db_xref="GeneID:947023" /translation="MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAV SNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACL SPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQT MPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIG SSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLK SQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWL YGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA QLRQI" repeat_region 2684117..2684214 /note="RIP186 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(2684254..2685507) /gene="glyA" /locus_tag="b2551" /gene_synonym="ECK2548; JW2535" /db_xref="EcoGene:EG10408" /db_xref="GeneID:947022" CDS complement(2684254..2685507) /gene="glyA" /locus_tag="b2551" /gene_synonym="ECK2548; JW2535" /EC_number="2.1.2.1" /function="enzyme; Amino acid biosynthesis: Glycine" /experiment="N-terminus verified by Edman degradation: PMID 2034230,9119048,9298646,9740056,10972807" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009063 - cellular amino acid catabolic process; GO:0046656 - folic acid biosynthetic process; GO:0006545 - glycine biosynthetic process" /codon_start=1 /transl_table=11 /product="serine hydroxymethyltransferase" /protein_id="NP_417046.1" /db_xref="GI:16130476" /db_xref="ASAP:ABE-0008389" /db_xref="UniProtKB/Swiss-Prot:P0A825" /db_xref="EcoGene:EG10408" /db_xref="GeneID:947022" /translation="MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVM QAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQAN FAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEK QAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVP HAHVVTTTTHKTLAGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVAL KEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEAD AALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS INDEAVIERIKGKVLDICARYPVYA" gene 2685835..2687025 /gene="hmp" /locus_tag="b2552" /gene_synonym="ECK2549; fsrB; hmpA; JW2536" /db_xref="EcoGene:EG10456" /db_xref="GeneID:947018" CDS 2685835..2687025 /gene="hmp" /locus_tag="b2552" /gene_synonym="ECK2549; fsrB; hmpA; JW2536" /EC_number="1.14.12.1" /EC_number="1.5.1.34" /function="enzyme; Energy metabolism, carbon: Electron transport" /experiment="N-terminus verified by Edman degradation: PMID 1601132,2034230,9298646,9724711" /note="dihydropteridine reductase, ferrisiderophore reductase activity" /codon_start=1 /transl_table=11 /product="fused nitric oxide dioxygenase/dihydropteridine reductase 2" /protein_id="NP_417047.1" /db_xref="GI:16130477" /db_xref="ASAP:ABE-0008396" /db_xref="UniProtKB/Swiss-Prot:P24232" /db_xref="EcoGene:EG10456" /db_xref="GeneID:947018" /translation="MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFN MSNQRNGDQREALFNAIAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGEHL LATLDEMFSPGQEVLDAWGKAYGVLANVFINREAEIYNENASKAGGWEGTRDFRIVAK TPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGYR IAVKREEGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDTPVTLISAGVGQTPMLA MLDTLAKAGHTAQVNWFHAAENGDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAK GQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFMQFTAKQLVDLGVKQENIHYECFGP HKVL" repeat_region 2687035..2687054 /note="REP187 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2687070..2687408) /gene="glnB" /locus_tag="b2553" /gene_synonym="ECK2550; JW2537" /db_xref="EcoGene:EG10384" /db_xref="GeneID:947016" CDS complement(2687070..2687408) /gene="glnB" /locus_tag="b2553" /gene_synonym="ECK2550; JW2537" /function="regulator; Amino acid biosynthesis: Glutamine" /experiment="N-terminus verified by Edman degradation: PMID 8293810" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006542 - glutamine biosynthetic process; GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="regulatory protein P-II for glutamine synthetase" /protein_id="NP_417048.1" /db_xref="GI:16130478" /db_xref="ASAP:ABE-0008398" /db_xref="UniProtKB/Swiss-Prot:P0A9Z1" /db_xref="EcoGene:EG10384" /db_xref="GeneID:947016" /translation="MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTE LYRGAEYMVDFLPKVKIEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRI RTGEEDDAAI" gene complement(2687469..2688803) /gene="glrR" /locus_tag="b2554" /gene_synonym="ECK2551; JW2538; qseF; yfhA" /db_xref="EcoGene:EG11285" /db_xref="GeneID:947042" CDS complement(2687469..2688803) /gene="glrR" /locus_tag="b2554" /gene_synonym="ECK2551; JW2538; qseF; yfhA" /function="putative regulator; Not classified" /GO_process="GO:0006464 - protein modification process" /note="putative 2-component transcriptional regulator" /codon_start=1 /transl_table=11 /product="response regulator regulating glmY sRNA in two-component system with sensor protein GlrK" /protein_id="NP_417049.1" /db_xref="GI:16130479" /db_xref="ASAP:ABE-0008400" /db_xref="UniProtKB/Swiss-Prot:P0AFU4" /db_xref="EcoGene:EG11285" /db_xref="GeneID:947042" /translation="MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRV LNREKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFS FLTKPVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSV LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVS NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISAT HRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVR AFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFV EARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE" gene complement(2688793..2689506) /gene="yfhG" /locus_tag="b2555" /gene_synonym="ECK2552; JW2539; qseG" /db_xref="EcoGene:EG12139" /db_xref="GeneID:947010" CDS complement(2688793..2689506) /gene="yfhG" /locus_tag="b2555" /gene_synonym="ECK2552; JW2539; qseG" /function="phenotype; Not classified" /note="putative alpha helix protein" /codon_start=1 /transl_table=11 /product="putative outer membrane protein modulating the QseEF response" /protein_id="NP_417050.1" /db_xref="GI:16130480" /db_xref="ASAP:ABE-0008405" /db_xref="UniProtKB/Swiss-Prot:P0AD44" /db_xref="EcoGene:EG12139" /db_xref="GeneID:947010" /translation="MRHIFQRLLPRRLWLAGLPCLALLGCVQNHNKPAIDTPAEEKIP VYQLADYLSTECSDIWALQGKSTETNPLYWLRAMDCADRLMPAQSRQQARQYDDGSWQ NTFKQGILLADAKITPYERRQLVARIEALSTEIPAQVRPLYQLWRDGQALQLQLAEER QRYSKLQQSSDSELDTLRQQHHVLQQQLELTTRKLENLTDIERQLSTRKPAGNFSPDT PHESEKPAPSTHEVTPDEP" gene complement(2689671..2691098) /gene="glrK" /locus_tag="b2556" /gene_synonym="ECK2553; JW5407; qseE; yfhK; yfhZ" /db_xref="EcoGene:EG13461" /db_xref="GeneID:947013" CDS complement(2689671..2691098) /gene="glrK" /locus_tag="b2556" /gene_synonym="ECK2553; JW5407; qseE; yfhK; yfhZ" /function="putative regulator; Not classified" /GO_process="GO:0006464 - protein modification process" /note="putative 2-component sensor protein" /codon_start=1 /transl_table=11 /product="sensor protein kinase regulating glmY sRNA in two-component system with response regulator GlrR" /protein_id="NP_417051.2" /db_xref="GI:90111458" /db_xref="ASAP:ABE-0008409" /db_xref="UniProtKB/Swiss-Prot:P52101" /db_xref="EcoGene:EG13461" /db_xref="GeneID:947013" /translation="MKRWPVFPRSLRQLVMLAFLLILLPLLVLAWQAWQSLNALSDQA ALVNRTTLIDARRSEAMTNAALEMERSYRQYCVLDDPTLAKVYQSQRKRYSEMLDAHA GVLPDDKLYQALRQDLHNLAQLQCNNSGPDAAAAARLEAFASANTEMVQATRTVVFSR GQQLQREIAERGQYFGWQSLVLFLVSLVMVLLFTRMIIGPVKNIERMINRLGEGRSLG NSVSFSGPSELRSVGQRILWLSERLSWLESQRHQFLRHLSHELKTPLASMREGTELLA DQVVGPLTPEQKEVVSILDSSSRNLQKLIEQLLDYNRKQADSAVELENVELAPLVETV VSAHSLPARAKMMHTDVDLKATACLAEPMLLMSVLDNLYSNAVHYGAESGNICLRSSL HGARVYIDVINTGTPIPQEERAMIFEPFFQGSHQRKGAVKGSGLGLSIARDCIRRMQG ELYLVDESGQDVCFRIELPSSKNTK" gene complement(2691157..2691340) /gene="glmY" /locus_tag="b4441" /gene_synonym="ECK2554; JWR0245; sroF; tke1" /db_xref="EcoGene:EG31155" /db_xref="GeneID:2847700" ncRNA complement(2691157..2691340) /ncRNA_class="other" /gene="glmY" /locus_tag="b4441" /gene_synonym="ECK2554; JWR0245; sroF; tke1" /product="sRNA activator of glmS mRNA, glmZ processing antagonist" /note="identified in a large scale screen" /db_xref="ASAP:ABE-0047261" /db_xref="EcoGene:EG31155" /db_xref="GeneID:2847700" gene complement(2691656..2695543) /gene="purL" /locus_tag="b2557" /gene_synonym="ECK2555; JW2541; purG; purI" /db_xref="EcoGene:EG10797" /db_xref="GeneID:947032" CDS complement(2691656..2695543) /gene="purL" /locus_tag="b2557" /gene_synonym="ECK2555; JW2541; purG; purI" /EC_number="6.3.5.3" /function="enzyme; Purine ribonucleotide biosynthesis" /experiment="N-terminus verified by Edman degradation: PMID 2659070" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006164 - purine nucleotide biosynthetic process" /note="phosphoribosylformyl-glycineamide synthetase = FGAM synthetase" /codon_start=1 /transl_table=11 /product="phosphoribosylformyl-glycineamide synthetase" /protein_id="YP_026170.1" /db_xref="GI:49176239" /db_xref="ASAP:ABE-0008412" /db_xref="UniProtKB/Swiss-Prot:P15254" /db_xref="EcoGene:EG10797" /db_xref="GeneID:947032" /translation="MMEILRGSPALSAFRINKLLARFQAARLPVHNIYAEYVHFADLN APLNDDEHAQLERLLKYGPALASHAPQGKLLLVTPRPGTISPWSSKATDIAHNCGLQQ VNRLERGVAYYIEAGTLTNEQWQQVTAELHDRMMETVFFALDDAEQLFAHHQPTPVTS VDLLGQGRQALIDANLRLGLALAEDEIDYLQDAFTKLGRNPNDIELYMFAQANSEHCR HKIFNADWVIDGEQQPKSLFKMIKNTFETTPDHVLSAYKDNAAVMEGSEVGRYFADHE TGRYDFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGAKPKAGLVG FSVSNLRIPGFEQPWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALNGYFRTY EEKVNSHNGEELRGYHKPIMLAGGIGNIRADHVQKGEINVGAKLVVLGGPAMNIGLGG GAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQLGDANPILFIHDVGAGGL SNAMPELVSDGGRGGKFELREILSDEPGMSPLEIWCNESQERYVLAVAADQLPLFDEL CKRERAPYAVIGEATEELHLSLHDRHFDNQPIDLPLDVLLGKTPKMTRDVQTLKAKGD ALAREGITIADAVKRVLHLPTVAEKTFLVTIGDRSVTGMVARDQMVGPWQVPVANCAV TTASLDSYYGEAMAIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANW MAAAGHPGEDAGLYEAVKAVGEELCPALGLTIPVGKDSMSMKTRWQEGNEEREMTSPL SLVISAFARVEDVRHTITPQLSTEDNALLLIDLGKGNNALGATALAQVYRQLGDKPAD VRDVAQLKGFYDAIQALVAQRKLLAYHDRSDGGLLVTLAEMAFAGHCGIDADIATLGD DRLAALFNEELGAVIQVRAADREAVESVLAQHGLADCVHYVGQAVSGDRFVITANGQT VFSESRTTLRVWWAETTWQMQRLRDNPECADQEHQAKSNDADPGLNVKLSFDINEDVA APYIATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLTGRTGLEDFHAL VACGGFSYGDVLGAGEGWAKSILFNDRVRDEFATFFHRPQTLALGVCNGCQMMSNLRE LIPGSELWPRFVRNTSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEVR DAAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTESGRVTIMMPHPE RVFRTVSNSWHPENWGEDGPWMRIFRNARKQLG" gene 2695801..2697357 /gene="mltF" /locus_tag="b2558" /gene_synonym="ECK2556; JW2542; yfhD" /db_xref="EcoGene:EG11373" /db_xref="GeneID:947028" CDS 2695801..2697357 /gene="mltF" /locus_tag="b2558" /gene_synonym="ECK2556; JW2542; yfhD" /function="enzyme; Transporter; Not classified" /GO_component="GO:0042597 - periplasmic space" /note="putative periplasmic binding transport protein" /codon_start=1 /transl_table=11 /product="membrane-bound lytic transglycosylase F, murein hydrolase" /protein_id="NP_417053.2" /db_xref="GI:171701683" /db_xref="ASAP:ABE-0008417" /db_xref="UniProtKB/Swiss-Prot:P0AGC5" /db_xref="EcoGene:EG11373" /db_xref="GeneID:947028" /translation="MKKLKINYLFIGILALLLAVALWPSIPWFGKADNRIAAIQARGE LRVSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNA DLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQYRPRTLGNLTAEQLTVAPGHVV VNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELA VALDITDEQPVTWFSPLDGDNTLSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVD TRTFLRAVDAVLPQLKPLFEKYAEEIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLT KNTAQSLGITDRTDAEQSISGGVRYLQDMMSKVPESVPENERIWFALAAYNMGYAHML DARALTAKTKGNPDSWADVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQIS LVGYLQEKEKQATEAAMQLAQDYPAVSPTELGKEKFPFLSFLSQSSSNYLTHSPSLLF SRKGSEEKQN" gene complement(2697354..2697857) /gene="tadA" /locus_tag="b2559" /gene_synonym="ECK2557; JW2543; yfhC" /db_xref="EcoGene:EG11372" /db_xref="GeneID:947027" CDS complement(2697354..2697857) /gene="tadA" /locus_tag="b2559" /gene_synonym="ECK2557; JW2543; yfhC" /EC_number="3.5.4.-" /function="enzyme; tRNA modification" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="tRNA-specific adenosine deaminase" /protein_id="NP_417054.2" /db_xref="GI:145698301" /db_xref="ASAP:ABE-0008419" /db_xref="UniProtKB/Swiss-Prot:P68398" /db_xref="EcoGene:EG11372" /db_xref="GeneID:947027" /translation="MSEVEFSHEYWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEG WNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRV VFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQK KAQSSTD" gene complement(2697915..2698550) /gene="pgpC" /locus_tag="b2560" /gene_synonym="ECK2558; JW5408; yfhB" /db_xref="EcoGene:EG11371" /db_xref="GeneID:947026" CDS complement(2697915..2698550) /gene="pgpC" /locus_tag="b2560" /gene_synonym="ECK2558; JW5408; yfhB" /function="enzyme; Macromolecule synthesis, modification: Phospholipids" /codon_start=1 /transl_table=11 /product="phosphatidylglycerophosphatase C, membrane bound" /protein_id="NP_417055.4" /db_xref="GI:90111459" /db_xref="ASAP:ABE-0008421" /db_xref="UniProtKB/Swiss-Prot:P0AD42" /db_xref="EcoGene:EG11371" /db_xref="GeneID:947026" /translation="MATHERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNALLVLPL LPIIAIALLIKGRAARWPMSLLLWGCTFGHSEARLQTLQADFVRWFRDNVTAFPLVQE RLTTYLLSSDADIWLITGSPQPLVEAVYFDTPWLPRVNLIASQIQRGYGGWVLTMRCL GHEKVAQLERKIGTPLRLYSGYSDSNQDNPLLYFCQHRWRVTPRGELQQLE" gene 2698759..2699607 /gene="yfhH" /locus_tag="b2561" /gene_synonym="ECK2559; JW2545" /db_xref="EcoGene:EG12308" /db_xref="GeneID:947030" CDS 2698759..2699607 /gene="yfhH" /locus_tag="b2561" /gene_synonym="ECK2559; JW2545" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator" /protein_id="NP_417056.2" /db_xref="GI:90111460" /db_xref="ASAP:ABE-0008428" /db_xref="UniProtKB/Swiss-Prot:P37767" /db_xref="EcoGene:EG12308" /db_xref="GeneID:947030" /translation="MNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEA GVSQSSVVKFAQKLGYKGFPALKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKL IKENTAAMYATLNVNSEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGFN AAAVRDMHALLATVQASSPDDLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPN ALQQRASHCLYTIAEEQATNSASISACHAQGMLTDLLFIALIQQDLELAPERIRHSEA LVKKLV" gene 2699663..2699923 /gene="yfhL" /locus_tag="b2562" /gene_synonym="ECK2560; JW2546" /db_xref="EcoGene:EG13215" /db_xref="GeneID:947031" CDS 2699663..2699923 /gene="yfhL" /locus_tag="b2562" /gene_synonym="ECK2560; JW2546" /GO_function="GO:0009055 - electron carrier activity" /codon_start=1 /transl_table=11 /product="putative 4Fe-4S cluster-containing protein" /protein_id="NP_417057.1" /db_xref="GI:16130487" /db_xref="ASAP:ABE-0008431" /db_xref="UniProtKB/Swiss-Prot:P52102" /db_xref="EcoGene:EG13215" /db_xref="GeneID:947031" /translation="MALLITKKCINCDMCEPECPNEAISMGDHIYEINSDKCTECVGH YETPTCQKVCPIPNTIVKDPAHVETEEQLWDKFVLMHHADKI" gene complement(2700117..2700197) /gene="shoB" /locus_tag="b4687" /gene_synonym="ECK4502; ryfB; yphI" /db_xref="EcoGene:EG14494" /db_xref="GeneID:7751620" CDS complement(2700117..2700197) /gene="shoB" /locus_tag="b4687" /gene_synonym="ECK4502; ryfB; yphI" /codon_start=1 /transl_table=11 /product="toxic membrane protein" /protein_id="YP_002791251.1" /db_xref="GI:226524739" /db_xref="UniProtKB/Swiss-Prot:C1P611" /db_xref="EcoGene:EG14494" /db_xref="GeneID:7751620" /translation="MTDCRYLIKRVIKIIIAVLQLILLFL" gene 2700520..2700596 /gene="ohsC" /locus_tag="b4608" /gene_synonym="ECK4417; ryfC" /db_xref="EcoGene:EG31178" /db_xref="GeneID:5061518" ncRNA 2700520..2700596 /ncRNA_class="antisense_RNA" /gene="ohsC" /locus_tag="b4608" /gene_synonym="ECK4417; ryfC" /product="sRNA antisense regulator of shoB toxin" /db_xref="EcoGene:EG31178" /db_xref="GeneID:5061518" gene complement(2700618..2700998) /gene="acpS" /locus_tag="b2563" /gene_synonym="dpj; ECK2561; JW2547" /db_xref="EcoGene:EG10247" /db_xref="GeneID:947037" CDS complement(2700618..2700998) /gene="acpS" /locus_tag="b2563" /gene_synonym="dpj; ECK2561; JW2547" /EC_number="2.7.8.7" /function="enzyme; Fatty acid and phosphatidic acid biosynthesis" /GO_component="GO:0005737 - cytoplasm" /note="CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase" /codon_start=1 /transl_table=11 /product="holo-[acyl-carrier-protein] synthase 1" /protein_id="NP_417058.1" /db_xref="GI:16130488" /db_xref="ASAP:ABE-0008433" /db_xref="UniProtKB/Swiss-Prot:P24224" /db_xref="EcoGene:EG10247" /db_xref="GeneID:947037" /translation="MAILGLGTDIVEIARIEAVIARSGDRLARRVLSDNEWAIWKTHH QPVRFLAKRFAVKEAAAKAFGTGIRNGLAFNQFEVFNDELGKPRLRLWGEALKLAEKL GVANMHVTLADERHYACATVIIES" gene complement(2700998..2701729) /gene="pdxJ" /locus_tag="b2564" /gene_synonym="ECK2562; JW2548" /db_xref="EcoGene:EG10693" /db_xref="GeneID:947039" CDS complement(2700998..2701729) /gene="pdxJ" /locus_tag="b2564" /gene_synonym="ECK2562; JW2548" /function="enzyme; Biosynthesis of cofactors, carriers: Pyridoxine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0008615 - pyridoxine biosynthetic process" /note="pyridoxine biosynthesis" /codon_start=1 /transl_table=11 /product="pyridoxine 5'-phosphate synthase" /protein_id="NP_417059.1" /db_xref="GI:16130489" /db_xref="ASAP:ABE-0008435" /db_xref="UniProtKB/Swiss-Prot:P0A794" /db_xref="EcoGene:EG10693" /db_xref="GeneID:947039" /translation="MAELLLGVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITV HLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVT TEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTGCYA DAKTDAEQAQELARIAKAATFAASLGLKVNAGHGLTYHNVKAIAAIPEMHELNIGHAI IGRAVMTGLKDAVAEMKRLMLEARG" gene complement(2701741..2702469) /gene="recO" /locus_tag="b2565" /gene_synonym="ECK2563; JW2549" /db_xref="EcoGene:EG10832" /db_xref="GeneID:947038" CDS complement(2701741..2702469) /gene="recO" /locus_tag="b2565" /gene_synonym="ECK2563; JW2549" /function="regulator; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006310 - DNA recombination; GO:0006281 - DNA repair" /note="protein interacts with RecR and possibly RecF proteins" /codon_start=1 /transl_table=11 /product="gap repair protein" /protein_id="NP_417060.1" /db_xref="GI:16130490" /db_xref="ASAP:ABE-0008438" /db_xref="UniProtKB/Swiss-Prot:P0A7H3" /db_xref="EcoGene:EG10832" /db_xref="GeneID:947038" /translation="MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRS TLKGALQPFTPLLLRFGGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVLEY ETRFSELFFDYLHCIQSLAGVTGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDD TMTYRYREEKGFIASVVIDNKTFTGRQLKALNAREFPDADTLRAAKRFTRMALKPYLG GKPLKSRELFRQFMPKRTVKTHYE" gene complement(2702481..2703386) /gene="era" /locus_tag="b2566" /gene_synonym="ECK2564; JW2550; sdgE" /db_xref="EcoGene:EG10270" /db_xref="GeneID:947036" CDS complement(2702481..2703386) /gene="era" /locus_tag="b2566" /gene_synonym="ECK2564; JW2550; sdgE" /function="factor; Global regulatory functions" /GO_process="GO:0007049 - cell cycle" /note="GTP-binding protein" /codon_start=1 /transl_table=11 /product="membrane-associated, 16S rRNA-binding GTPase" /protein_id="NP_417061.1" /db_xref="GI:16130491" /db_xref="ASAP:ABE-0008440" /db_xref="UniProtKB/Swiss-Prot:P06616" /db_xref="EcoGene:EG10270" /db_xref="GeneID:947036" /translation="MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR HRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT PDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL NVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEI ERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLE LWVKVKSGWADDERALRSLGYVDDL" gene complement(2703383..2704063) /gene="rnc" /locus_tag="b2567" /gene_synonym="ECK2565; JW2551; ranA" /db_xref="EcoGene:EG10857" /db_xref="GeneID:947033" CDS complement(2703383..2704063) /gene="rnc" /locus_tag="b2567" /gene_synonym="ECK2565; JW2551; ranA" /EC_number="3.1.26.3" /function="enzyme; Degradation of RNA" /experiment="N-terminus verified by Edman degradation: PMID 2105934" /GO_process="GO:0006401 - RNA catabolic process" /note="RNase III, ds RNA" /codon_start=1 /transl_table=11 /product="RNase III" /protein_id="NP_417062.1" /db_xref="GI:16130492" /db_xref="ASAP:ABE-0008448" /db_xref="UniProtKB/Swiss-Prot:P0A7Y0" /db_xref="EcoGene:EG10857" /db_xref="GeneID:947033" /translation="MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLG DSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELK SGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRL QEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQ ALKKLELE" gene complement(2704335..2705309) /gene="lepB" /locus_tag="b2568" /gene_synonym="ECK2566; JW2552; lep" /db_xref="EcoGene:EG10530" /db_xref="GeneID:947040" CDS complement(2704335..2705309) /gene="lepB" /locus_tag="b2568" /gene_synonym="ECK2566; JW2552; lep" /EC_number="3.4.21.89" /function="enzyme; Protein, peptide secretion" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="leader peptidase (signal peptidase I)" /protein_id="NP_417063.1" /db_xref="GI:16130493" /db_xref="ASAP:ABE-0008450" /db_xref="UniProtKB/Swiss-Prot:P00803" /db_xref="EcoGene:EG10530" /db_xref="GeneID:947040" /translation="MANMFALILVIATLVTGILWCVDKFFFAPKRRERQAAAQAAAGD SLDKATLKKVAPKPGWLETGASVFPVLAIVLIVRSFIYEPFQIPSGSMMPTLLIGDFI LVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDP VSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETK ENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNR DNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGLRLSRIGGIH" gene complement(2705325..2707124) /gene="lepA" /locus_tag="b2569" /gene_synonym="ECK2567; JW2553" /db_xref="EcoGene:EG10529" /db_xref="GeneID:947051" CDS complement(2705325..2707124) /gene="lepA" /locus_tag="b2569" /gene_synonym="ECK2567; JW2553" /function="factor; Proteins - translation and modification" /GO_process="GO:0006412 - translation" /note="GTP-binding elongation factor, may be inner membrane protein" /codon_start=1 /transl_table=11 /product="back-translocating elongation factor EF4, GTPase" /protein_id="NP_417064.1" /db_xref="GI:16130494" /db_xref="ASAP:ABE-0008452" /db_xref="UniProtKB/Swiss-Prot:P60785" /db_xref="EcoGene:EG10529" /db_xref="GeneID:947051" /translation="MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSM DLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVV DAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR CSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLR KGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTL ARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYEPESSSAL GFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSREVIYVDSPSKLPA VNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEV VLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDALALITHRDNSQNRG RELVEKMKDLIPRQQFDIAIQAAIGTHIIARSTVKQLRKNVLAKCYGGDISRKKKLLQ KQKEGKKRMKQIGNVELPQEAFLAILHVGKDNK" gene complement(2707322..2707801) /gene="rseC" /locus_tag="b2570" /gene_synonym="ECK2568; JW2554" /db_xref="EcoGene:EG13178" /db_xref="GeneID:947052" CDS complement(2707322..2707801) /gene="rseC" /locus_tag="b2570" /gene_synonym="ECK2568; JW2554" /function="regulator; Global regulatory functions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042594 - response to starvation; GO:0006350 - transcription" /note="sigma-E factor, negative regulatory protein" /codon_start=1 /transl_table=11 /product="SoxR iron-sulfur cluster reduction factor component" /protein_id="NP_417065.1" /db_xref="GI:16130495" /db_xref="ASAP:ABE-0008457" /db_xref="UniProtKB/Swiss-Prot:P46187" /db_xref="EcoGene:EG13178" /db_xref="GeneID:947052" /translation="MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLG PQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS DVAALCGAILGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ" gene complement(2707798..2708754) /gene="rseB" /locus_tag="b2571" /gene_synonym="ECK2569; JW2555" /db_xref="EcoGene:EG13177" /db_xref="GeneID:947054" CDS complement(2707798..2708754) /gene="rseB" /locus_tag="b2571" /gene_synonym="ECK2569; JW2555" /function="regulator; Global regulatory functions" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0042594 - response to starvation; GO:0006350 - transcription" /note="regulates activity of sigma-E factor" /codon_start=1 /transl_table=11 /product="anti-sigma E factor, binds RseA" /protein_id="NP_417066.1" /db_xref="GI:16130496" /db_xref="ASAP:ABE-0008459" /db_xref="UniProtKB/Swiss-Prot:P0AFX9" /db_xref="EcoGene:EG13177" /db_xref="GeneID:947054" /translation="MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYE LSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTL NGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWM DTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKA KFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQM LRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGAAQ" gene complement(2708754..2709404) /gene="rseA" /locus_tag="b2572" /gene_synonym="ECK2570; JW2556; mclA; yfiJ" /db_xref="EcoGene:EG12341" /db_xref="GeneID:947053" CDS complement(2708754..2709404) /gene="rseA" /locus_tag="b2572" /gene_synonym="ECK2570; JW2556; mclA; yfiJ" /function="regulator; Global regulatory functions" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009266 - response to temperature stimulus; GO:0006350 - transcription" /note="sigma-E factor, negative regulatory protein" /codon_start=1 /transl_table=11 /product="anti-sigma factor" /protein_id="NP_417067.1" /db_xref="GI:16130497" /db_xref="ASAP:ABE-0008462" /db_xref="UniProtKB/Swiss-Prot:P0AFX7" /db_xref="EcoGene:EG12341" /db_xref="GeneID:947053" /translation="MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMR GDTPEVLHFDISSRVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLT QMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANN GQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ" gene complement(2709437..2710012) /gene="rpoE" /locus_tag="b2573" /gene_synonym="ECK2571; JW2557; sigE" /db_xref="EcoGene:EG11897" /db_xref="GeneID:947050" CDS complement(2709437..2710012) /gene="rpoE" /locus_tag="b2573" /gene_synonym="ECK2571; JW2557; sigE" /function="regulator; Global regulatory functions" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009266 - response to temperature stimulus; GO:0006350 - transcription" /note="RNA polymerase, sigma-E factor; heat shock and oxidative stress" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma E factor" /protein_id="NP_417068.1" /db_xref="GI:16130498" /db_xref="ASAP:ABE-0008467" /db_xref="UniProtKB/Swiss-Prot:P0AGB6" /db_xref="EcoGene:EG11897" /db_xref="GeneID:947050" /translation="MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE AENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIA AIMDCPVGTVRSRIFRAREAIDNKVQPLIRR" gene 2710420..2712042 /gene="nadB" /locus_tag="b2574" /gene_synonym="ECK2572; JW2558; nic; nicB" /db_xref="EcoGene:EG10631" /db_xref="GeneID:947049" CDS 2710420..2712042 /gene="nadB" /locus_tag="b2574" /gene_synonym="ECK2572; JW2558; nic; nicB" /EC_number="1.4.3.16" /function="enzyme; Biosynthesis of cofactors, carriers: Pyridine nucleotide" /experiment="N-terminus verified by Edman degradation: PMID 2187483,2841129" /GO_process="GO:0009435 - NAD biosynthetic process" /note="quinolinate synthetase, B protein" /codon_start=1 /transl_table=11 /product="quinolinate synthase, L-aspartate oxidase (B protein) subunit" /protein_id="NP_417069.1" /db_xref="GI:16130499" /db_xref="ASAP:ABE-0008471" /db_xref="UniProtKB/Swiss-Prot:P10902" /db_xref="EcoGene:EG10631" /db_xref="GeneID:947049" /translation="MNTLPEHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEG STFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGV LFDTHIQPNGEESYHLTREGGHSHRRILHAADATGREVETTLVSKALNHPNIRVLERS NAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPD ISSGDGIAMAWRAGCRVANLEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGTR FMPDFDERGELAPRDIVARAIDHEMKRLGADCMFLDISHKPADFIRQHFPMIYEKLLG LGIDLTQEPVPIVPAAHYTCGGVMVDDHGRTDVEGLYAIGEVSYTGLHGANRMASNSL LECLVYGWSAAEDITRRMPYAHDISTLPPWDESRVENPDERVVIQHNWHELRLFMWDY VGIVRTTKRLERALRRITMLQQEIDEYYAHFRVSNNLLELRNLVQVAELIVRCAMMRK ESRGLHFTLDYPELLTHSGPSILSPGNHYINR" gene complement(2712027..2712764) /gene="trmN" /locus_tag="b2575" /gene_synonym="ECK2573; JW2559; trmN6; yfiC" /db_xref="EcoGene:EG11538" /db_xref="GeneID:947047" CDS complement(2712027..2712764) /gene="trmN" /locus_tag="b2575" /gene_synonym="ECK2573; JW2559; trmN6; yfiC" /EC_number="2.1.1.223" /function="enzyme; tRNA modification" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase" /protein_id="NP_417070.2" /db_xref="GI:90111461" /db_xref="ASAP:ABE-0008473" /db_xref="UniProtKB/Swiss-Prot:P31825" /db_xref="EcoGene:EG11538" /db_xref="GeneID:947047" /translation="MSQSTSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAG VKRCLDIGAGSGLLALMLAQRTDDSVMIDAVELESEAAAQAQENINQSPWAERINVHT ADIQQWITQQTVRFDLIISNPPYYQQGVECSTPQREQARYTTTLDHPSLLTCAAECIT EEGFFCVVLPEQIGNGFTELALSMGWHLRLRTDVAENEARLPHRVLLAFSPQAGECFS DRLVIRGPDQNYSEAYTALTQAFYLFM" gene 2712896..2714230 /gene="srmB" /locus_tag="b2576" /gene_synonym="ECK2574; JW2560; rbaB; rhlA" /db_xref="EcoGene:EG10975" /db_xref="GeneID:947055" CDS 2712896..2714230 /gene="srmB" /locus_tag="b2576" /gene_synonym="ECK2574; JW2560; rbaB; rhlA" /EC_number="2.7.7.-" /function="enzyme; RNA synthesis, modification, DNA transcription" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="ATP-dependent RNA helicase" /protein_id="NP_417071.1" /db_xref="GI:16130501" /db_xref="ASAP:ABE-0008478" /db_xref="UniProtKB/Swiss-Prot:P21507" /db_xref="EcoGene:EG10975" /db_xref="GeneID:947055" /translation="MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDV LGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVSDHARELAKH THLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEAD RMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRE RKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNC YLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLH RIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTG KPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE" repeat_region 2714283..2714380 /note="RIP188 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(2714439..2715320) /gene="yfiE" /locus_tag="b2577" /gene_synonym="ECK2575; JW2561" /db_xref="EcoGene:EG11785" /db_xref="GeneID:947064" CDS complement(2714439..2715320) /gene="yfiE" /locus_tag="b2577" /gene_synonym="ECK2575; JW2561" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator" /protein_id="NP_417072.4" /db_xref="GI:90111462" /db_xref="ASAP:ABE-0008483" /db_xref="UniProtKB/Swiss-Prot:P33634" /db_xref="EcoGene:EG11785" /db_xref="GeneID:947064" /translation="MDLRRFITLKTVVEEGSFLRASQKLCCTQSTVTFHIQQLEQEFS VQLFEKIGRRMCLTREGKKLLPHIYELTRVMDTLREAAKKESDPDGELRVVSGETLLS YRMPQVLQRFRQRAPKVRLSLQSLNCYVIRDALLNDEADVGVFYRVGNDDALNRRELG EQSLVLVASPQIADVDFTEPGRHNACSFIINEPQCVFRQIFESTLRQRRITVENTIEL ISIESIKRCVAANIGVSYLPRFAVAKELECGELIELPFGEQSQTITAMCAHHAGKAVS PAMHTFIQCVEESFVAG" gene 2715423..2716010 /gene="eamB" /locus_tag="b2578" /gene_synonym="ECK2576; JW2562; yfiK" /db_xref="EcoGene:EG12445" /db_xref="GeneID:947065" CDS 2715423..2716010 /gene="eamB" /locus_tag="b2578" /gene_synonym="ECK2576; JW2562; yfiK" /codon_start=1 /transl_table=11 /product="cysteine and O-acetylserine exporter" /protein_id="NP_417073.1" /db_xref="GI:16130503" /db_xref="ASAP:ABE-0008487" /db_xref="UniProtKB/Swiss-Prot:P38101" /db_xref="EcoGene:EG12445" /db_xref="GeneID:947065" /translation="MTPTLLSAFWTYTLITAMTPGPNNILALSSATSHGFRQSTRVLA GMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSPTKEDGLQA KPISFWASFALQFVNVKIILYGVTALSTFVLPQTQALSWVVGVSVLLAMIGTFGNVCW ALAGHLFQRLFRQYGRQLNIVLALLLVYCAVRIFY" gene complement(2716066..2716449) /gene="grcA" /locus_tag="b2579" /gene_synonym="ECK2577; JW2563; yfiD" /db_xref="EcoGene:EG11784" /db_xref="GeneID:947068" CDS complement(2716066..2716449) /gene="grcA" /locus_tag="b2579" /gene_synonym="ECK2577; JW2563; yfiD" /function="putative enzyme; Energy metabolism, carbon: Anaerobic respiration" /experiment="N-terminus verified by Edman degradation: PMID 9600841,9740056,9868784,10094700" /GO_process="GO:0009061 - anaerobic respiration" /note="putative formate acetyltransferase" /codon_start=1 /transl_table=11 /product="autonomous glycyl radical cofactor" /protein_id="NP_417074.1" /db_xref="GI:16130504" /db_xref="ASAP:ABE-0008489" /db_xref="UniProtKB/Swiss-Prot:P68066" /db_xref="EcoGene:EG11784" /db_xref="GeneID:947068" /translation="MITGIQITKAANDDLLNSFWLLDSEKGEARCIVAKAGYAEDEVV AVSKLGDIEYREVPVEVKPEVRVEGGQHLNVNVLRRETLEDAVKHPEKYPQLTIRVSG YAVRFNSLTPEQQRDVIARTFTESL" gene 2716754..2717443 /gene="ung" /locus_tag="b2580" /gene_synonym="ECK2578; JW2564" /db_xref="EcoGene:EG11058" /db_xref="GeneID:947067" CDS 2716754..2717443 /gene="ung" /locus_tag="b2580" /gene_synonym="ECK2578; JW2564" /EC_number="3.2.2.-" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006281 - DNA repair" /codon_start=1 /transl_table=11 /product="uracil-DNA-glycosylase" /protein_id="NP_417075.1" /db_xref="GI:16130505" /db_xref="ASAP:ABE-0008495" /db_xref="UniProtKB/Swiss-Prot:P12295" /db_xref="EcoGene:EG11058" /db_xref="GeneID:947067" /translation="MANELTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDV FNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPG FTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVV FLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQRGETPI DWMPVLPAESE" repeat_region 2717458..2717483 /note="REP189 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2717491..2718528) /gene="yfiF" /locus_tag="b2581" /gene_synonym="ECK2579; JW2565" /db_xref="EcoGene:EG11786" /db_xref="GeneID:947066" CDS complement(2717491..2718528) /gene="yfiF" /locus_tag="b2581" /gene_synonym="ECK2579; JW2565" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="putative methyltransferase" /protein_id="NP_417076.1" /db_xref="GI:16130506" /db_xref="ASAP:ABE-0008497" /db_xref="UniProtKB/Swiss-Prot:P0AGJ5" /db_xref="EcoGene:EG11786" /db_xref="GeneID:947066" /translation="MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRA DGGRRPARDDKQSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRR QRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA ELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSC AHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTS SEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGV LLGEWWRQNKA" gene 2718735..2719154 /gene="trxC" /locus_tag="b2582" /gene_synonym="ECK2580; JW2566; yfiG" /db_xref="EcoGene:EG11887" /db_xref="GeneID:947062" CDS 2718735..2719154 /gene="trxC" /locus_tag="b2582" /gene_synonym="ECK2580; JW2566; yfiG" /EC_number="1.8.1.8" /function="putative enzyme; Not classified" /note="putative thioredoxin-like protein" /codon_start=1 /transl_table=11 /product="thioredoxin 2" /protein_id="NP_417077.1" /db_xref="GI:16130507" /db_xref="ASAP:ABE-0008501" /db_xref="UniProtKB/Swiss-Prot:P0AGG4" /db_xref="EcoGene:EG11887" /db_xref="GeneID:947062" /translation="MNTVCTHCQAINRIPDDRIEDAAKCGRCGHDLFDGEVINATGET LDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRF GIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL" gene 2719223..2719921 /gene="yfiP" /locus_tag="b2583" /gene_synonym="ECK2581; JW5409" /db_xref="EcoGene:EG14223" /db_xref="GeneID:947057" CDS 2719223..2719921 /gene="yfiP" /locus_tag="b2583" /gene_synonym="ECK2581; JW5409" /codon_start=1 /transl_table=11 /product="DTW domain protein" /protein_id="NP_417078.4" /db_xref="GI:90111463" /db_xref="ASAP:ABE-0008503" /db_xref="UniProtKB/Swiss-Prot:Q47319" /db_xref="EcoGene:EG14223" /db_xref="GeneID:947057" /translation="MTENAVLQLRAERIARATRPFLARGNRVRRCQRCLLPEKLCLCS TITPAQAKSRFCLLMFDTEPMKPSNTGRLIADILPDTVAFQWSRTEPSQDLLELVQNP DYQPMVVFPASYADEQREVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDNLPVIS VDLSRLSAYRLREAQAEGQYCTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKT QHLGSITAEQLESV" gene 2719953..2722613 /gene="pka" /locus_tag="b2584" /gene_synonym="ECK2582; JW2568; pat; patZ; yfiQ" /db_xref="EcoGene:EG14224" /db_xref="GeneID:947056" CDS 2719953..2722613 /gene="pka" /locus_tag="b2584" /gene_synonym="ECK2582; JW2568; pat; patZ; yfiQ" /function="enzyme; Proteins - translation and modification" /codon_start=1 /transl_table=11 /product="protein lysine acetyltransferase" /protein_id="NP_417079.1" /db_xref="GI:16130509" /db_xref="ASAP:ABE-0008506" /db_xref="UniProtKB/Swiss-Prot:P76594" /db_xref="EcoGene:EG14224" /db_xref="GeneID:947056" /translation="MSQRGLEALLRPKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPV LPVTPAWKAVLGVLAWPDIASLPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSA PASQHEDLRACALRHNMRLLGPNSLGLLAPWQGLNASFSPVPIKRGKLAFISQSAAVS NTILDWAQQRKMGFSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFV SAARSASRNKPILVIKSGRSPAAQRLLNTTAGMDPAWDAAIQRAGLLRVQDTHELFSA VETLSHMRPLRGDRLMIISNGAAPAALALDALWSRNGKLATLSEETCQKLRDALPEHV AISNPLDLRDDASSEHYIKTLDILLHSQDFDALMVIHSPSAAAPATESAQVLIEAVKH HPRSKYVSLLTNWCGEHSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRNQKQLR ETPALPSNLTSNTAEAHLLLQQAIAEGATSLDTHEVQPILQAYGMNTLPTWIASDSTE AVHIAEQIGYPVALKLRSPDIPHKSEVQGVMLYLRTANEVQQAANAIFDRVKMAWPQA RVHGLLVQSMANRAGAQELRVVVEHDPVFGPLIMLGEGGVEWRPEDQAVVALPPLNMN LARYLVIQGIKSKKIRARSALRPLDVAGLSQLLVQVSNLIVDCPEIQRLDIHPLLASG SEFTALDVTLDISPFEGDNESRLAVRPYPHQLEEWVELKNGERCLFRPILPEDEPQLQ QFISRVTKEDLYYRYFSEINEFTHEDLANMTQIDYDREMAFVAVRRIDQTEEILGVTR AISDPDNIDAEFAVLVRSDLKGLGLGRRLMEKLITYTRDHGLQRLNGITMPNNRGMVA LARKLGFNVDIQLEEGIVGLTLNLAQREES" gene 2722727..2724082 /gene="pssA" /locus_tag="b2585" /gene_synonym="ECK2583; JW2569; pss" /db_xref="EcoGene:EG10781" /db_xref="GeneID:947059" CDS 2722727..2724082 /gene="pssA" /locus_tag="b2585" /gene_synonym="ECK2583; JW2569; pss" /EC_number="2.7.8.8" /function="enzyme; Macromolecule synthesis, modification: Phospholipids" /experiment="N-terminus verified by Edman degradation: PMID 2002065" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0008654 - phospholipid biosynthetic process" /note="phosphatidylserine synthase; phospholipid synthesis" /codon_start=1 /transl_table=11 /product="phosphatidylserine synthase; CDP-diacylglycerol-serine O-phosphatidyltransferase" /protein_id="NP_417080.4" /db_xref="GI:90111464" /db_xref="ASAP:ABE-0008510" /db_xref="UniProtKB/Swiss-Prot:P23830" /db_xref="EcoGene:EG10781" /db_xref="GeneID:947059" /translation="MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYAPADFRETLLEKI ASAKQRICIVALYLEQDDGGKGILNALYEAKRQRPELDVRVLVDWHRAQRGRIGAAAS NTNADWYCRMAQENPGVDVPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDVYL HQHDKYRYDRYHLIRNRKMSDIMFEWVTQNIMNGRGVNRLDDVNRPKSPEIKNDIRLF RQELRDAAYHFQGDADNDQLSVTPLVGLGKSSLLNKTIFHLMPCAEQKLTICTPYFNL PAILVRNIIQLLREGKKVEIIVGDKTANDFYIPEDEPFKIIGALPYLYEINLRRFLSR LQYYVNTDQLVVRLWKDDDNTYHLKGMWVDDKWMLITGNNLNPRAWRLDLENAILIHD PQLELAPQREKELELIREHTTIVKHYRDLQSIADYPVKVRKLIRRLRRIRIDRLISRI L" gene 2724128..2724451 /gene="yfiM" /locus_tag="b2586" /gene_synonym="ECK2584; JW2570" /db_xref="EcoGene:EG12857" /db_xref="GeneID:947060" CDS 2724128..2724451 /gene="yfiM" /locus_tag="b2586" /gene_synonym="ECK2584; JW2570" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="NP_417081.2" /db_xref="GI:145698302" /db_xref="ASAP:ABE-0008513" /db_xref="UniProtKB/Swiss-Prot:P46126" /db_xref="EcoGene:EG12857" /db_xref="GeneID:947060" /translation="MRILFVCSLLLLSGCSHMANDSWSGQDKAQHFIASAMLSAAGNE YSQHQGMSRDRSAMFGLMFSVSLGASKELWDSRPEGSGWSWKDLAWDVAGASTGYTVW QLTRH" gene complement(2724448..2725746) /gene="kgtP" /locus_tag="b2587" /gene_synonym="ECK2585; JW2571; witA" /db_xref="EcoGene:EG10522" /db_xref="GeneID:947069" CDS complement(2724448..2725746) /gene="kgtP" /locus_tag="b2587" /gene_synonym="ECK2585; JW2571; witA" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="alpha-ketoglutarate permease" /codon_start=1 /transl_table=11 /product="alpha-ketoglutarate transporter" /protein_id="NP_417082.1" /db_xref="GI:16130512" /db_xref="ASAP:ABE-0008515" /db_xref="UniProtKB/Swiss-Prot:P0AEX3" /db_xref="EcoGene:EG10522" /db_xref="GeneID:947069" /translation="MAESTVTADSKLTSSDTRRRIWAIVGASSGNLVEWFDFYVYSFC SLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLLSVCM MCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF YASFQYVTLIGGQLLALLVVVVLQHTMEDAALREWGWRIPFALGAVLAVVALWLRRQL DETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGM HANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAAIFTVPILSALQNVS SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANAIFGGSAEYV ALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHRKGKGMRL" gene complement(2726069..2726188) /gene="rrfG" /locus_tag="b2588" /gene_synonym="ECK2586; JWR0051" /db_xref="EcoGene:EG30075" /db_xref="GeneID:947070" rRNA complement(2726069..2726188) /gene="rrfG" /locus_tag="b2588" /gene_synonym="ECK2586; JWR0051" /product="5S ribosomal RNA of rrnG operon" /db_xref="ASAP:ABE-0008519" /db_xref="EcoGene:EG30075" /db_xref="GeneID:947070" gene complement(2726281..2729184) /gene="rrlG" /locus_tag="b2589" /gene_synonym="ECK2587; JWR0052" /db_xref="EcoGene:EG30082" /db_xref="GeneID:947585" rRNA complement(2726281..2729184) /gene="rrlG" /locus_tag="b2589" /gene_synonym="ECK2587; JWR0052" /product="23S ribosomal RNA of rrnG operon" /db_xref="ASAP:ABE-0008521" /db_xref="EcoGene:EG30082" /db_xref="GeneID:947585" gene complement(2729369..2729444) /gene="gltW" /locus_tag="b2590" /gene_synonym="ECK2588; JWR0053" /db_xref="EcoGene:EG30035" /db_xref="GeneID:947076" tRNA complement(2729369..2729444) /gene="gltW" /locus_tag="b2590" /gene_synonym="ECK2588; JWR0053" /product="tRNA-Glu" /note="anticodon: UUC" /db_xref="ASAP:ABE-0008523" /db_xref="EcoGene:EG30035" /db_xref="GeneID:947076" gene complement(2729616..2731157) /gene="rrsG" /locus_tag="b2591" /gene_synonym="ECK2589; JWR0054" /db_xref="EcoGene:EG30089" /db_xref="GeneID:947071" rRNA complement(2729616..2731157) /gene="rrsG" /locus_tag="b2591" /gene_synonym="ECK2589; JWR0054" /product="16S ribosomal RNA of rrnG operon" /db_xref="ASAP:ABE-0008525" /db_xref="EcoGene:EG30089" /db_xref="GeneID:947071" gene complement(2731600..2734173) /gene="clpB" /locus_tag="b2592" /gene_synonym="ECK2590; htpM; JW2573" /db_xref="EcoGene:EG10157" /db_xref="GeneID:947077" CDS complement(2731600..2734173) /gene="clpB" /locus_tag="b2592" /gene_synonym="ECK2590; htpM; JW2573" /function="putative enzyme; Degradation of proteins, peptides, glyco" /experiment="N-terminus verified by Edman degradation: PMID 1953774" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006457 - protein folding" /note="heat shock protein" /codon_start=1 /transl_table=11 /product="protein disaggregation chaperone" /protein_id="NP_417083.1" /db_xref="GI:16130513" /db_xref="ASAP:ABE-0008527" /db_xref="UniProtKB/Swiss-Prot:P63284" /db_xref="EcoGene:EG10157" /db_xref="GeneID:947077" /translation="MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGG SVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRG DNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG LAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF IDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQ KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAID LIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSD KERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPE LEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQEL HHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFD SDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKEL VLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDE ALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAV Q" gene complement(2734153..2734295) /gene="ryfD" /locus_tag="b4609" /gene_synonym="ECK4418" /db_xref="EcoGene:EG31179" /db_xref="GeneID:5061506" ncRNA complement(2734153..2734295) /ncRNA_class="other" /gene="ryfD" /locus_tag="b4609" /gene_synonym="ECK4418" /product="novel sRNA, function unknown" /db_xref="EcoGene:EG31179" /db_xref="GeneID:5061506" gene complement(2734303..2735034) /gene="yfiH" /locus_tag="b2593" /gene_synonym="ECK2591; JW2575" /db_xref="EcoGene:EG12097" /db_xref="GeneID:947089" CDS complement(2734303..2735034) /gene="yfiH" /locus_tag="b2593" /gene_synonym="ECK2591; JW2575" /codon_start=1 /transl_table=11 /product="UPF0124 family protein" /protein_id="NP_417084.1" /db_xref="GI:16130514" /db_xref="ASAP:ABE-0008530" /db_xref="UniProtKB/Swiss-Prot:P33644" /db_xref="EcoGene:EG12097" /db_xref="GeneID:947089" /translation="MSKLIVPQWPQPKGVAACSSTRIGGVSLPPYDSLNLGAHCGDNP DHVEENRKRLFAAGNLPSKPVWLEQVHGKDVLKLTGEPYASKRADASYSNTPGTVCAV MTADCLPVLFCNRAGTEVAAAHAGWRGLCAGVLEETVSCFADNPENILAWLGPAIGPR AFEVGGEVREAFMAVDAKASAAFIQHGDKYLADIYQLARQRLANVGVEQIFGGDRCTY TENETFFSYRRDKTTGRMASFIWLI" gene complement(2735031..2736011) /gene="rluD" /locus_tag="b2594" /gene_synonym="ECK2592; JW2576; sfhB; yfiI" /db_xref="EcoGene:EG12098" /db_xref="GeneID:947087" CDS complement(2735031..2736011) /gene="rluD" /locus_tag="b2594" /gene_synonym="ECK2592; JW2576; sfhB; yfiI" /EC_number="4.2.1.70" /function="enzyme; rRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="23S rRNA pseudouridine(1911,1915,1917) synthase" /protein_id="NP_417085.1" /db_xref="GI:16130515" /db_xref="ASAP:ABE-0008532" /db_xref="UniProtKB/Swiss-Prot:P33643" /db_xref="EcoGene:EG12098" /db_xref="GeneID:947087" /translation="MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQR VLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDL VVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVE SLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDR QALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVDWL" gene 2736146..2736883 /gene="bamD" /locus_tag="b2595" /gene_synonym="ecfD; ECK2593; JW2577; yfiO" /db_xref="EcoGene:EG14222" /db_xref="GeneID:947086" CDS 2736146..2736883 /gene="bamD" /locus_tag="b2595" /gene_synonym="ecfD; ECK2593; JW2577; yfiO" /codon_start=1 /transl_table=11 /product="BamABCDE complex OM biogenesis lipoprotein" /protein_id="NP_417086.1" /db_xref="GI:16130516" /db_xref="ASAP:ABE-0008536" /db_xref="UniProtKB/Swiss-Prot:P0AC02" /db_xref="EcoGene:EG14222" /db_xref="GeneID:947086" /translation="MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQ DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLM ENAYRQMQMNAQAEKVAKIIAANSSNT" gene 2737154..2737495 /gene="raiA" /locus_tag="b2597" /gene_synonym="ECK2594; JW2578; yfiA" /db_xref="EcoGene:EG11151" /db_xref="GeneID:947129" CDS 2737154..2737495 /gene="raiA" /locus_tag="b2597" /gene_synonym="ECK2594; JW2578; yfiA" /function="putative regulator; Not classified" /GO_process="GO:0006412 - translation" /note="putative yhbH sigma 54 modulator" /codon_start=1 /transl_table=11 /product="cold shock protein associated with 30S ribosomal subunit" /protein_id="NP_417088.1" /db_xref="GI:16130518" /db_xref="ASAP:ABE-0008540" /db_xref="UniProtKB/Swiss-Prot:P0AD49" /db_xref="EcoGene:EG11151" /db_xref="GeneID:947129" /translation="MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE PQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK DANFVEEVEEE" gene 2737599..2737646 /gene="pheL" /locus_tag="b2598" /gene_synonym="ECK2595; JW2579; pheAE" /db_xref="EcoGene:EG11271" /db_xref="GeneID:947080" CDS 2737599..2737646 /gene="pheL" /locus_tag="b2598" /gene_synonym="ECK2595; JW2579; pheAE" /function="leader; Amino acid biosynthesis: Phenylalanine" /GO_process="GO:0009094 - L-phenylalanine biosynthetic process" /note="leader peptide of chorismate mutase-P-prephenate dehydratase" /codon_start=1 /transl_table=11 /product="pheA gene leader peptide" /protein_id="NP_417089.1" /db_xref="GI:16130519" /db_xref="ASAP:ABE-0008543" /db_xref="UniProtKB/Swiss-Prot:P0AD72" /db_xref="EcoGene:EG11271" /db_xref="GeneID:947080" /translation="MKHIPFFFAFFFTFP" gene 2737745..2738905 /gene="pheA" /locus_tag="b2599" /gene_synonym="ECK2596; JW2580" /db_xref="EcoGene:EG10707" /db_xref="GeneID:947081" CDS 2737745..2738905 /gene="pheA" /locus_tag="b2599" /gene_synonym="ECK2596; JW2580" /EC_number="4.2.1.51" /EC_number="5.4.99.5" /function="enzyme; Amino acid biosynthesis: Phenylalanine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009094 - L-phenylalanine biosynthetic process; GO:0006571 - tyrosine biosynthetic process" /note="chorismate mutase-P and prephenate dehydratase" /codon_start=1 /transl_table=11 /product="chorismate mutase and prephenate dehydratase, P-protein" /protein_id="NP_417090.1" /db_xref="GI:16130520" /db_xref="ASAP:ABE-0008545" /db_xref="UniProtKB/Swiss-Prot:P0A9J8" /db_xref="EcoGene:EG10707" /db_xref="GeneID:947081" /translation="MTSENPLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHR PVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNKINPH SARIAFLGPKGSYSHLAARQYAARHFEQFIESGCAKFADIFNQVETGQADYAVVPIEN TSSGAINDVYDLLQHTSLSIVGEMTLTIDHCLLVSGTTDLSTINTVYSHPQPFQQCSK FLNRYPHWKIEYTESTSAAMEKVAQAKSPHVAALGSEAGGTLYGLQVLERIEANQRQN FTRFVVLARKAINVSDQVPAKTTLLMATGQQAGALVEALLVLRNHNLIMTRLESRPIH GNPWEEMFYLDIQANLESAEMQKALKELGEITRSMKVLGCYPSENVVPVDPT" repeat_region 2738915..2738938 /note="REP190 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2738948..2740069) /gene="tyrA" /locus_tag="b2600" /gene_synonym="ECK2597; JW2581" /db_xref="EcoGene:EG11039" /db_xref="GeneID:947115" CDS complement(2738948..2740069) /gene="tyrA" /locus_tag="b2600" /gene_synonym="ECK2597; JW2581" /EC_number="1.3.1.12" /EC_number="5.4.99.5" /function="enzyme; Amino acid biosynthesis: Tyrosine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009094 - L-phenylalanine biosynthetic process; GO:0006571 - tyrosine biosynthetic process" /note="chorismate mutase-T and prephenate dehydrogenase" /codon_start=1 /transl_table=11 /product="fused chorismate mutase T/prephenate dehydrogenase" /protein_id="NP_417091.1" /db_xref="GI:16130521" /db_xref="ASAP:ABE-0008547" /db_xref="UniProtKB/Swiss-Prot:P07023" /db_xref="EcoGene:EG11039" /db_xref="GeneID:947115" /translation="MVAELTALRDQIDEVDKALLNLLAKRLELVAEVGEVKSRFGLPI YVPEREASMLASRRAEAEALGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPSLRPVV IVGGGGQMGRLFEKMLTLSGYQVRILEQHDWDRAADIVADAGMVIVSVPIHVTEQVIG KLPPLPKDCILVDLASVKNGPLQAMLVAHDGPVLGLHPMFGPDSGSLAKQVVVWCDGR KPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQ LLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSERNLALIKRYYKRFGEAIELLEQG DKQAFIDSFRKVEHWFGDYAQRFQSESRVLLRQANDNRQ" gene complement(2740080..2741150) /gene="aroF" /locus_tag="b2601" /gene_synonym="ECK2598; JW2582" /db_xref="EcoGene:EG10078" /db_xref="GeneID:947084" CDS complement(2740080..2741150) /gene="aroF" /locus_tag="b2601" /gene_synonym="ECK2598; JW2582" /EC_number="2.5.1.54" /function="enzyme; Amino acid biosynthesis: Tyrosine" /experiment="N-terminus verified by Edman degradation: PMID 6104668,6146618" /GO_process="GO:0009423 - chorismate biosynthetic process" /note="3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, tyrosine repressible)" /codon_start=1 /transl_table=11 /product="3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible" /protein_id="NP_417092.1" /db_xref="GI:16130522" /db_xref="ASAP:ABE-0008549" /db_xref="UniProtKB/Swiss-Prot:P00888" /db_xref="EcoGene:EG10078" /db_xref="GeneID:947084" /translation="MQKDALNNVHITDEQVLMTPEQLKAAFPLSLQQEAQIADSRKSI SDIIAGRDPRLLVVCGPCSIHDPETALEYARRFKALAAEVSDSLYLVMRVYFEKPRTT VGWKGLINDPHMDGSFDVEAGLQIARKLLLELVNMGLPLATEALDPNSPQYLGDLFSW SAIGARTTESQTHREMASGLSMPVGFKNGTDGSLATAINAMRAAAQPHRFVGINQAGQ VALLQTQGNPDGHVILRGGKAPNYSPADVAQCEKEMEQAGLRPSLMVDCSHGNSNKDY RRQPAVAESVVAQIKDGNRSIIGLMIESNIHEGNQSSEQPRSEMKYGVSVTDACISWE MTDALLREIHQDLNGQLTARVA" gene 2741360..2741725 /gene="yfiL" /locus_tag="b2602" /gene_synonym="ECK2599; JW5412" /db_xref="EcoGene:EG12446" /db_xref="GeneID:947106" CDS 2741360..2741725 /gene="yfiL" /locus_tag="b2602" /gene_synonym="ECK2599; JW5412" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_417093.2" /db_xref="GI:90111465" /db_xref="ASAP:ABE-0008565" /db_xref="UniProtKB/Swiss-Prot:P11289" /db_xref="EcoGene:EG12446" /db_xref="GeneID:947106" /translation="MMKKFIAPLLALLVSGCQIDPYTHAPTLTSTDWYDVGMEDAISG SAIKDDDAFSDSQADRGLYLKGYAEGQKKTCQTDFTYARGLSGKSFPASCNNVENASQ LHEVWQKGADENASTIRLN" gene 2741875..2742393 /gene="yfiR" /locus_tag="b2603" /gene_synonym="ECK2600; JW2584" /db_xref="EcoGene:EG14225" /db_xref="GeneID:947090" CDS 2741875..2742393 /gene="yfiR" /locus_tag="b2603" /gene_synonym="ECK2600; JW2584" /codon_start=1 /transl_table=11 /product="putative periplasmic inhibitor of YfiN activity" /protein_id="NP_417094.1" /db_xref="GI:16130524" /db_xref="ASAP:ABE-0008568" /db_xref="UniProtKB/Swiss-Prot:P64548" /db_xref="EcoGene:EG14225" /db_xref="GeneID:947090" /translation="MRFSHRLFLLLILLLTGAPILAQEPSDVAKNVRMMVSGIVSYTR WPALSGPPKLCIFSSSRFSTALQENAATSLPYLPVIIHTQQEAMISGCNGFYFGNESP TFQMELTEQYPSKALLLIAEQNTECIIGSAFCLIIHNNDVRFAVNLDALSRSGVKVNP DVLMLARKKNDG" gene 2742383..2743609 /gene="yfiN" /locus_tag="b2604" /gene_synonym="ECK2601; JW2585" /db_xref="EcoGene:EG12880" /db_xref="GeneID:947091" CDS 2742383..2743609 /gene="yfiN" /locus_tag="b2604" /gene_synonym="ECK2601; JW2585" /codon_start=1 /transl_table=11 /product="putative membrane-anchored diguanylate cyclase" /protein_id="NP_417095.1" /db_xref="GI:16130525" /db_xref="ASAP:ABE-0008570" /db_xref="UniProtKB/Swiss-Prot:P46139" /db_xref="EcoGene:EG12880" /db_xref="GeneID:947091" /translation="MMDNDNSLNKRPTFKRALRNISMTSIFITMMLIWLLLSVTSVLT LKQYAQKNLALTAATMTYSLEAAVVFADGPAATETLAALGQQGQFSTAEVRDKQQNIL ASWHYTRKDPGDTFSNFISHWLFPAPIIQPIRHNGETIGEVRLTARDSSISHFIWFSL AVLTGCILLASGIAITLTRHLHNGLVEALKNITDVVHDVRSNRNFSRRVSEERIAEFH RFALDFNSLLDEMEEWQLRLQAKNAQLLRTALHDPLTGLANRAAFRSGINTLMNNSDA RKTSALLFLDGDNFKYINDTWGHATGDRVLIEIAKRLAEFGGLRHKAYRLGGDEFAMV LYDVQSESEVQQICSALTQIFNLPFDLHNGHQTTMTLSIGYAMTIEHASAEKLQELAD HNMYQAKHQRAEKLVR" gene 2743625..2744107 /gene="yfiB" /locus_tag="b2605" /gene_synonym="ECK2602; JW2586" /db_xref="EcoGene:EG11152" /db_xref="GeneID:947094" CDS 2743625..2744107 /gene="yfiB" /locus_tag="b2605" /gene_synonym="ECK2602; JW2586" /function="putative membrane; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative outer membrane protein" /codon_start=1 /transl_table=11 /product="OM lipoprotein putative positive effector of YfiN activity" /protein_id="NP_417096.1" /db_xref="GI:16130526" /db_xref="ASAP:ABE-0008572" /db_xref="UniProtKB/Swiss-Prot:P07021" /db_xref="EcoGene:EG11152" /db_xref="GeneID:947094" /translation="MIKHLVAPLVFTSLILTGCQSPQGKFTPEQVAAMQSYGFTESAG DWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNE GLSLKRANVVADAWAMGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP " gene complement(2744183..2744530) /gene="rplS" /locus_tag="b2606" /gene_synonym="ECK2603; JW2587" /db_xref="EcoGene:EG10880" /db_xref="GeneID:947096" CDS complement(2744183..2744530) /gene="rplS" /locus_tag="b2606" /gene_synonym="ECK2603; JW2587" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L19" /protein_id="NP_417097.1" /db_xref="GI:16130527" /db_xref="ASAP:ABE-0008574" /db_xref="UniProtKB/Swiss-Prot:P0A7K6" /db_xref="EcoGene:EG10880" /db_xref="GeneID:947096" /translation="MSNIIKQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFE GVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRE RTGKAARIKERLN" gene complement(2744572..2745339) /gene="trmD" /locus_tag="b2607" /gene_synonym="ECK2604; JW2588" /db_xref="EcoGene:EG11023" /db_xref="GeneID:947099" CDS complement(2744572..2745339) /gene="trmD" /locus_tag="b2607" /gene_synonym="ECK2604; JW2588" /EC_number="2.1.1.228" /function="enzyme; tRNA modification" /experiment="N-terminus verified by Edman degradation: PMID 6337136" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /note="tRNA methyltransferase; tRNA (guanine-7-)-methyltransferase" /codon_start=1 /transl_table=11 /product="tRNA m(1)G37 methyltransferase, SAM-dependent" /protein_id="NP_417098.1" /db_xref="GI:16130528" /db_xref="ASAP:ABE-0008576" /db_xref="UniProtKB/Swiss-Prot:P0A873" /db_xref="EcoGene:EG11023" /db_xref="GeneID:947099" /translation="MWIGIISLFPEMFRAITDYGVTGRAVKNGLLSIQSWSPRDFTHD RHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSEL ATNQKLILVCGRYEGIDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVSRFIPGVL GHEASATEDSFAEGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWL RRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA" gene complement(2745370..2745918) /gene="rimM" /locus_tag="b2608" /gene_synonym="ECK2605; JW5413; yfjA" /db_xref="EcoGene:EG11153" /db_xref="GeneID:947101" CDS complement(2745370..2745918) /gene="rimM" /locus_tag="b2608" /gene_synonym="ECK2605; JW5413; yfjA" /function="enzyme; rRNA processing" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="ribosome maturation factor" /protein_id="NP_417099.4" /db_xref="GI:90111466" /db_xref="ASAP:ABE-0008579" /db_xref="UniProtKB/Swiss-Prot:P0A7X6" /db_xref="EcoGene:EG11153" /db_xref="GeneID:947101" /translation="MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY QPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLE EGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLD GQVIKKVDLTTRSIEVDWDPGF" gene complement(2745937..2746185) /gene="rpsP" /locus_tag="b2609" /gene_synonym="ECK2606; JW2590" /db_xref="EcoGene:EG10915" /db_xref="GeneID:947103" CDS complement(2745937..2746185) /gene="rpsP" /locus_tag="b2609" /gene_synonym="ECK2606; JW2590" /function="structural component; Ribosomal proteins - synthesis, modification" /experiment="N-terminus verified by Edman degradation: PMID 336510,8730873,9298646" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S16" /protein_id="NP_417100.1" /db_xref="GI:16130530" /db_xref="ASAP:ABE-0008583" /db_xref="UniProtKB/Swiss-Prot:P0A7T3" /db_xref="EcoGene:EG10915" /db_xref="GeneID:947103" /translation="MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIAS EKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVNKAA" gene complement(2746434..2747795) /gene="ffh" /locus_tag="b2610" /gene_synonym="ECK2607; JW5414" /db_xref="EcoGene:EG10300" /db_xref="GeneID:947102" CDS complement(2746434..2747795) /gene="ffh" /locus_tag="b2610" /gene_synonym="ECK2607; JW5414" /function="transport; Protein, peptide secretion" /note="GTP-binding export factor binds to signal sequence, GTP and RNA" /codon_start=1 /transl_table=11 /product="Signal Recognition Particle (SRP) component with 4.5S RNA (ffs)" /protein_id="NP_417101.1" /db_xref="GI:16130531" /db_xref="ASAP:ABE-0008586" /db_xref="UniProtKB/Swiss-Prot:P0AGD7" /db_xref="EcoGene:EG10300" /db_xref="GeneID:947102" /translation="MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVA LPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAV VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETL FVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVG EKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDF LEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPE IIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMMPPGF PGR" gene 2747962..2748753 /gene="ypjD" /locus_tag="b2611" /gene_synonym="corE; ECK2608; JW2592" /db_xref="EcoGene:EG14226" /db_xref="GeneID:947098" CDS 2747962..2748753 /gene="ypjD" /locus_tag="b2611" /gene_synonym="corE; ECK2608; JW2592" /codon_start=1 /transl_table=11 /product="cytochrome c assembly protein family inner membrane protein" /protein_id="NP_417102.4" /db_xref="GI:145698303" /db_xref="ASAP:ABE-0008591" /db_xref="UniProtKB/Swiss-Prot:P64432" /db_xref="EcoGene:EG14226" /db_xref="GeneID:947098" /translation="MPVFALLALVAYSVSLALIVPGLLQKNGGWRRMAIISAVIALVC HAIALEARILPDGDSGQNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALI NLALATFMPNEYITHLEATPGMLVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKL AFNQEMPPLMSIERKMFHITQIGVVLLTLTLCTGLFYMHNLFSMENIDKAVLSIVAWF VYIVLLWGHYHEGWRGRRVVWFNVAGAVILTLAYFGSRIVQQLIS" gene 2748774..2750060 /gene="yfjD" /locus_tag="b4461" /gene_synonym="corB; corF; ECK2609; JW5415; ypjE" /db_xref="EcoGene:EG12442" /db_xref="GeneID:2847739" CDS 2748774..2750060 /gene="yfjD" /locus_tag="b4461" /gene_synonym="corB; corF; ECK2609; JW5415; ypjE" /note="putative membrane protein" /codon_start=1 /transl_table=11 /product="UPF0053 family inner membrane protein" /protein_id="YP_026171.3" /db_xref="GI:145698304" /db_xref="ASAP:ABE-0174111" /db_xref="UniProtKB/Swiss-Prot:P37908" /db_xref="EcoGene:EG12442" /db_xref="GeneID:2847739" /translation="MEHISTTTLIIILIIMVVISAYFSGSETGMMTLNRYRLRHMAKQ GNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLT FVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNAITRMLMRMMGIK TDIVVSGSLSKEELRTIVHESRSQISRRNQDMLLSVLDLEKMTVDDIMVPRSEIIGID INDDWKSILRQLSHSPHGRIVLYRDSLDDAISMLRVREAWRLMSEKKEFTKETMLRAA DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMS PTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGT RVRIGEYDIDILDVQDNMIKQVKVFPVKPLRESVAE" gene complement(2750115..2750708) /gene="grpE" /locus_tag="b2614" /gene_synonym="ECK2610; JW2594" /db_xref="EcoGene:EG10416" /db_xref="GeneID:947097" CDS complement(2750115..2750708) /gene="grpE" /locus_tag="b2614" /gene_synonym="ECK2610; JW2594" /function="IS, phage, Tn; Phage-related functions and prophages" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006457 - protein folding" /note="phage lambda replication; host DNA synthesis; heat shock protein; protein repair" /codon_start=1 /transl_table=11 /product="heat shock protein" /protein_id="NP_417104.1" /db_xref="GI:16130533" /db_xref="ASAP:ABE-0008598" /db_xref="UniProtKB/Swiss-Prot:P09372" /db_xref="EcoGene:EG10416" /db_xref="GeneID:947097" /translation="MSSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKV ANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSL DRALEVADKANPDMSAMVEGIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMV ESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAKA" gene 2750831..2751709 /gene="nadK" /locus_tag="b2615" /gene_synonym="ECK2611; JW2596; yfjB; yfjE" /db_xref="EcoGene:EG12192" /db_xref="GeneID:947092" CDS 2750831..2751709 /gene="nadK" /locus_tag="b2615" /gene_synonym="ECK2611; JW2596; yfjB; yfjE" /EC_number="2.7.1.23" /experiment="N-terminus verified by Edman degradation: PMID 11488932" /codon_start=1 /transl_table=11 /product="NAD kinase" /protein_id="NP_417105.1" /db_xref="GI:16130534" /db_xref="ASAP:ABE-0008603" /db_xref="UniProtKB/Swiss-Prot:P0A7B3" /db_xref="EcoGene:EG12192" /db_xref="GeneID:947092" /translation="MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCTKGYEVIVEQQIA HELQLKNVKTGTLAEIGQLADLAVVVGGDGNMLGAARTLARYDIKVIGINRGNLGFLT DLDPDNAQQQLADVLEGHYISEKRFLLEAQVCQQDCQKRISTAINEVVLHPGKVAHMI EFEVYIDEIFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSA RPLVINSSSTIRLRFSHRRNDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYS YFNTLSTKLGWSKKLF" gene 2751795..2753456 /gene="recN" /locus_tag="b2616" /gene_synonym="ECK2612; JW5416; radB" /db_xref="EcoGene:EG10831" /db_xref="GeneID:947105" CDS 2751795..2753456 /gene="recN" /locus_tag="b2616" /gene_synonym="ECK2612; JW5416; radB" /function="putative enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006310 - DNA recombination; GO:0006281 - DNA repair; GO:0009432 - SOS response" /note="protein used in recombination and DNA repair" /codon_start=1 /transl_table=11 /product="recombination and repair protein" /protein_id="YP_026172.1" /db_xref="GI:49176247" /db_xref="ASAP:ABE-0008611" /db_xref="UniProtKB/Swiss-Prot:P05824" /db_xref="EcoGene:EG10831" /db_xref="GeneID:947105" /translation="MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGL CLGGRAEADMVRTGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGR SRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLA NSGQLLTTSQNALALMADGEDANLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQ IAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPEALPQYYQSLLEEQQ QLDDQADSQETLALAVTKHHQQALEIARALHQQRQQYAEELAQLITDSMHALSMPHGQ FTIDVKFDEHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARK METPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHYFVSKE TDGAMTETHMQSLNKKARLQELARLLGGSEVTRNTLANAKELLAA" gene 2753605..2753946 /gene="bamE" /locus_tag="b2617" /gene_synonym="ECK2613; JW2598; smpA; smqA" /db_xref="EcoGene:EG10952" /db_xref="GeneID:945583" CDS 2753605..2753946 /gene="bamE" /locus_tag="b2617" /gene_synonym="ECK2613; JW2598; smpA; smqA" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="small membrane protein A" /codon_start=1 /transl_table=11 /product="lipoprotein component of BamABCDE OM biogenesis complex" /protein_id="NP_417107.2" /db_xref="GI:90111468" /db_xref="ASAP:ABE-0008614" /db_xref="UniProtKB/Swiss-Prot:P0A937" /db_xref="EcoGene:EG10952" /db_xref="GeneID:945583" /translation="MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVS KIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLT NIDNKPALSGN" gene complement(2754008..2754298) /gene="ratB" /locus_tag="b2618" /gene_synonym="ECK2614; JW2599; pasI; yfjF" /db_xref="EcoGene:EG13192" /db_xref="GeneID:945078" CDS complement(2754008..2754298) /gene="ratB" /locus_tag="b2618" /gene_synonym="ECK2614; JW2599; pasI; yfjF" /codon_start=1 /transl_table=11 /product="UPF0125 family protein" /protein_id="NP_417108.4" /db_xref="GI:90111469" /db_xref="ASAP:ABE-0008616" /db_xref="UniProtKB/Swiss-Prot:P52119" /db_xref="EcoGene:EG13192" /db_xref="GeneID:945078" /translation="MPGKIAVEVAYALPEKQYLQRVTLQEGATVEEAIRASGLLELRT DIDLTKNKVGIYSRPAKLSDSVHDGDRVEIYRPLIADPKELRRQRAEKSANK" gene complement(2754288..2754764) /gene="ratA" /locus_tag="b2619" /gene_synonym="ECK2615; JW2600; pasT; yfjG" /db_xref="EcoGene:EG13193" /db_xref="GeneID:945614" CDS complement(2754288..2754764) /gene="ratA" /locus_tag="b2619" /gene_synonym="ECK2615; JW2600; pasT; yfjG" /codon_start=1 /transl_table=11 /product="toxic UPF0083 family protein inhibitor of 70S ribosome formation" /protein_id="NP_417109.1" /db_xref="GI:16130538" /db_xref="ASAP:ABE-0008618" /db_xref="UniProtKB/Swiss-Prot:P0AGL5" /db_xref="EcoGene:EG13193" /db_xref="GeneID:945614" /translation="MILFVGFLLMEIVMPQISRTALVPYSAEQMYQLVNDVQSYPQFL PGCTGSRILESTPGQMTAAVDVSKAGISKTFTTRNQLTSNQSILMNLVDGPFKKLIGG WKFTPLSQEACRIEFHLDFEFTNKLIELAFGRVFKELAANMVQAFTVRAKEVYSAR" gene 2754896..2755378 /gene="smpB" /locus_tag="b2620" /gene_synonym="ECK2616; JW2601; smqB" /db_xref="EcoGene:EG11782" /db_xref="GeneID:947296" CDS 2754896..2755378 /gene="smpB" /locus_tag="b2620" /gene_synonym="ECK2616; JW2601; smqB" /note="small protein B" /codon_start=1 /transl_table=11 /product="tmRNA-binding trans-translation protein" /protein_id="NP_417110.1" /db_xref="GI:16130539" /db_xref="ASAP:ABE-0008622" /db_xref="UniProtKB/Swiss-Prot:P0A832" /db_xref="EcoGene:EG11782" /db_xref="GeneID:947296" /translation="MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSL RAGKANISDSYVLLRDGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYG RVNREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR " gene 2755593..2755955 /gene="ssrA" /locus_tag="b2621" /gene_synonym="ECK2617; JWR0055; sipB" /db_xref="EcoGene:EG30100" /db_xref="GeneID:945053" tmRNA 2755593..2755955 /gene="ssrA" /locus_tag="b2621" /gene_synonym="ECK2617; JWR0055; sipB" /product="tmRNA, 10Sa RNA" /note="acts as tRNA-Ala and mRNA template for tagging proteins resulting from premature transcription termination for degradation, a process known as trans-translation" /function="2.2.6 information transfer; RNA related; rRNA, stable RNA" /function="2.3.6 information transfer; protein related; turnover, degradation" /function="6.6 cell structure; ribosome" /function="7.1 location of gene products; cytoplasm" /function="RNA; Ribosomal and stable RNAs" /db_xref="ASAP:ABE-0008624" /db_xref="EcoGene:EG30100" /db_xref="GeneID:945053" misc_feature 2755957..2777986 /note="cryptic prophage CP4-57" gene 2756159..2757400 /gene="intA" /locus_tag="b2622" /gene_synonym="ECK2618; intX; JW2602; slpA" /db_xref="EcoGene:EG11783" /db_xref="GeneID:946160" CDS 2756159..2757400 /gene="intA" /locus_tag="b2622" /gene_synonym="ECK2618; intX; JW2602; slpA" /function="Phage or Prophage Related" /note="prophage CP4-57 integrase" /codon_start=1 /transl_table=11 /product="CP4-57 prophage; integrase" /protein_id="NP_417111.1" /db_xref="GI:16130540" /db_xref="ASAP:ABE-0008630" /db_xref="UniProtKB/Swiss-Prot:P32053" /db_xref="EcoGene:EG11783" /db_xref="GeneID:946160" /translation="MARKTKPLTDTEIKAAKPKDADYQLYDGDGLTLLIKSSGSKLWQ FRYYRPLTKQRTKQSFGAYPAVSLSDARKLRAESKVLLAKDIDPQEHQKEQVRNSQEA KTNTFLLVAERWWNVKKTSVTEDYADDIWRSLERDIFPAIGDISITEIKAHTLVKAVQ PVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQ LPQLMHTMRTASISMSTRCLFMWQLLTITRPAEAAEARWDEIDFNASEWKIPAARMKM NRDHTVPLSDGALAILEMMKPLSGGREFIFPSRIKPNQPMNSQTVNAALKRAGLGGVL VSHGLRSIASTALNEEGFPPDVIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWADL VKAADSGSIVLTHLSKIRLVG" gene complement(2757644..2758600) /gene="yfjH" /locus_tag="b2623" /gene_synonym="ECK2619; JW2603" /db_xref="EcoGene:EG13194" /db_xref="GeneID:946123" CDS complement(2757644..2758600) /gene="yfjH" /locus_tag="b2623" /gene_synonym="ECK2619; JW2603" /function="Phage or Prophage Related" /note="putative histone" /codon_start=1 /transl_table=11 /product="CP4-57 prophage; uncharacterized protein" /protein_id="NP_417112.1" /db_xref="GI:16130541" /db_xref="ASAP:ABE-0008632" /db_xref="UniProtKB/Swiss-Prot:P52123" /db_xref="EcoGene:EG13194" /db_xref="GeneID:946123" /translation="MGIFKAKNPCTKNTIFTTSNTLIYGGFMISLNDFYEQICRKRRD LAYHMSECEWAVDTDVLEEDHPEIRIELGRMREQFWSSEKIGTRVRLYSCDVPWETRH HTVNGQLEIKEEYTELYDPAQECWKNLSSNLTKETFLPLVIEPFSINDIFKAHLMFAS ISFFWGKSIMSENENVAFKAFHRAAELFDKCIGMTWFNISVCNQKKLSEVRRSAGKKG GKSKAEVYHIIQLKLVELINDSVPNDGWKNKVVAVNELIEPLWDFIQMSEFEINNQNK KYRVATMSQDALVDTILNQWSLKNEDVKQAFDSAVRRKKRSK" gene 2758644..2758856 /gene="alpA" /locus_tag="b2624" /gene_synonym="ECK2620; JW2604" /db_xref="EcoGene:EG12112" /db_xref="GeneID:946758" CDS 2758644..2758856 /gene="alpA" /locus_tag="b2624" /gene_synonym="ECK2620; JW2604" /function="IS, phage, Tn; Phage or Prophage Related" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="prophage CP4-57 regulatory protein alpA" /codon_start=1 /transl_table=11 /product="CP4-57 prophage; DNA-binding transcriptional activator" /protein_id="NP_417113.1" /db_xref="GI:16130542" /db_xref="ASAP:ABE-0008636" /db_xref="UniProtKB/Swiss-Prot:P33997" /db_xref="EcoGene:EG12112" /db_xref="GeneID:946758" /translation="MNNRSAVRILRLPAVIQKTGMARATIYDWLNPKSPRYDATFPKK RMLGVKSVGWIEAEIDEWLSQRCKLI" gene 2758985..2760394 /gene="yfjI" /locus_tag="b2625" /gene_synonym="ECK2621; JW2605" /db_xref="EcoGene:EG13195" /db_xref="GeneID:944764" CDS 2758985..2760394 /gene="yfjI" /locus_tag="b2625" /gene_synonym="ECK2621; JW2605" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-57 prophage; uncharacterized protein" /protein_id="NP_417114.1" /db_xref="GI:16130543" /db_xref="ASAP:ABE-0008643" /db_xref="UniProtKB/Swiss-Prot:P52124" /db_xref="EcoGene:EG13195" /db_xref="GeneID:944764" /translation="MFNGRPFPVDAFPKIIRNAIYEVEQHTQAPQGLIAASALGVISL ACQNRIDVCRLNNLRGPVSLFLMTLAESGERKSTVDKLLMKPLYQLEEDLFEKYTHDL TAWRNDEAIFNIEKKALMSKLKSDIRRNKDHLATNERLKELLTTNPKAPVRFKFLFND ATPAAIKAHLCGHWRSVGIMSDEAGIIFNGYTLNELPFINKMWDGSIFTVERKNEPEK LIRDARITLSLMVQPNVFKGYIDRKGDMAKGIGFFARCLMCQPASTQGNRKISNPIFS NEHLPVFHQRLMEIVNESIIKINENNRICLRFSAEAERHWIEFYNQVESEMRMIGLLY DFKDYASKMAENMARLAALLHYFSGDGGDISVTAVKAAVEIVAWYIEEYIRLFSKKEE FSLDVSEADELYCWIKDYCTQKFSSCIKKNIILQFGPNKFRNRDKANELIRILISQNK IFISSWGKTKIINITHCVF" gene 2760547..2761173 /gene="yfjJ" /locus_tag="b2626" /gene_synonym="ECK2622; JW2607" /db_xref="EcoGene:EG13196" /db_xref="GeneID:947112" CDS 2760547..2761173 /gene="yfjJ" /locus_tag="b2626" /gene_synonym="ECK2622; JW2607" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-57 prophage; uncharacterized protein" /protein_id="NP_417115.1" /db_xref="GI:16130544" /db_xref="ASAP:ABE-0008646" /db_xref="UniProtKB/Swiss-Prot:P52125" /db_xref="EcoGene:EG13196" /db_xref="GeneID:947112" /translation="MTYDSEFGSHVSLYRDRIKQVIDDSLNEHLNSMILRVDLHDPID TENMDNPFFQPRVDSGAISRFTSALKAKLKHDKHIKTQRKDWPDSRHSTLRYAWVREY TKNRKRHYHLILCFNQDAYYHLGDYDLNRNTLRTMITTAWYSALGIPIDSSGKLVNYP PNGKYLLNRKRDNFEQTYSDLMNRVDYMTKVRTKIVGDGDRNFGCSRG" gene complement(2761351..2763540) /gene="yfjK" /locus_tag="b2627" /gene_synonym="ECK2623; JW2608" /db_xref="EcoGene:EG13197" /db_xref="GeneID:947111" CDS complement(2761351..2763540) /gene="yfjK" /locus_tag="b2627" /gene_synonym="ECK2623; JW2608" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="radiation resistance protein; DEAD/H helicase-like protein; CP4-57 putative defective prophage" /protein_id="NP_417116.1" /db_xref="GI:16130545" /db_xref="ASAP:ABE-0008648" /db_xref="UniProtKB/Swiss-Prot:P52126" /db_xref="EcoGene:EG13197" /db_xref="GeneID:947111" /translation="MTEIYEQAKHSLQGEDFSSFNYLFAVNKLLSNPVSYDLGRDLIV RALDSRERFSEHTTILKNMVRKSGLFPYLKKEFTSLTPDDLRVLELYRTPFSDGYVFH SMQFHIFDLLKSGQNVVLSAPTSMGKSAIVDSLLGMGTLKRLVLVVPTVALADETRRR LQERFGDRYQIIHHSSQVCHSDQAVYVLTQERVNERDDIVDIDLFVIDEFYKLAFRQL KSGDIDHQDERVIELNIALSKLLKVSRQFYLTGPFVNSIRGLEKLGYPHTFVSTDFNT VALDVKTFGIKANDDKAKLKALGEIAHACVDATIIYCKSPTVAGLVARELIRLGHGTP TENPHVDWVSEEFDADWDYTVALRNGIGLHFGALPRALQQYTADQFNAGKLRFLLCTS TIIEGVNTIAKNVVIYDNRDGTRSIDKFTHGNIKGRAGRMGVHFVGKIFCLEEIPEDN LNQEVDIPLGIQGIDTPINLLASVQPDHLSEFSQDRFDEVFINDRVSIDLVKKHSYFR VEQFEMLQSMFEMMDDNEFSSLVFHWTPATNFLKTFAKIIARLVPHTFSRNGVPVKPT DVMIAKLAGYLSAESYSEYLKNQIDYARQWISEGEKRTLSIALNNDLKLITNTFGYTL PKVLSLMEDVVKHHAVKRGIRSKVDYTHVKLAFESFHLPPGVNALEEIGIPIQTLHRL VDLLEFSDEADVDELSQYLRDTQDIWSRSIGYVDQMFIRRALGIRRH" gene complement(2763537..2765153) /gene="yfjL" /locus_tag="b2628" /gene_synonym="ECK2624; JW2609" /db_xref="EcoGene:EG13198" /db_xref="GeneID:947110" CDS complement(2763537..2765153) /gene="yfjL" /locus_tag="b2628" /gene_synonym="ECK2624; JW2609" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein" /protein_id="NP_417117.1" /db_xref="GI:16130546" /db_xref="ASAP:ABE-0008650" /db_xref="UniProtKB/Swiss-Prot:P52127" /db_xref="EcoGene:EG13198" /db_xref="GeneID:947110" /translation="MESNDSGGVAAKHGFLFQDCVAAYHVTRMLRDKTIRSVRCEVTD DIDIVSDGYIDFVQVKSTGKTRWNISDIVQNSKGADKKTIPCSSILHKSMQCESDLSL GRRYSIVTEEKVNKTLEYLTISPNARLDKPGRQELIDDLNKRTDNFLTDSGISVSDWI DAATWEVFSSLRELELLGIKNIRLASQDLHGVILSSETVAEDIWCRILDTVTRKGEHS RRIHSADDKSYLRPDLLEWFKQRVEDDQSRSGRKIYVKRDLPHILTPFRAPMASVCAK RKGQVLHQQYSLKKYRYKHIADNVCQWLDEVFLRPKEMSDIHKLTFIEKRERLKNSVF KSLHDVSEFLGRVLLHATIRQHHESQPIPCMLYVEKAGAEKILENVHIVRRDPEGDQL WIGFSELVTDINIAVRLPEIRDQLYEDISDCIDTARKKILDIKDDNYLLRHDIDEILD GSQPFDAHLDRFTFVLFVGYDSNLLTEPETPGFEDDLEKETAVLFEKFAADLIEDSPF ANLCIHVFIYPAPSLERLTQLVDEKVREVV" gene complement(2765513..2765776) /gene="yfjM" /locus_tag="b2629" /gene_synonym="ECK2625; JW2610" /db_xref="EcoGene:EG13199" /db_xref="GeneID:947108" CDS complement(2765513..2765776) /gene="yfjM" /locus_tag="b2629" /gene_synonym="ECK2625; JW2610" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-57 prophage; uncharacterized protein" /protein_id="NP_417118.1" /db_xref="GI:16130547" /db_xref="ASAP:ABE-0008654" /db_xref="UniProtKB/Swiss-Prot:P52128" /db_xref="EcoGene:EG13199" /db_xref="GeneID:947108" /translation="MGDDVHRFGNLFLISPSSNSILSNYSPADKKKFYVETERAESPK QAIMMSYKEWGPDGQGINNIESHEHAMLTLLKEHRDMTLPTRK" gene 2765918..2766991 /gene="rnlA" /locus_tag="b2630" /gene_synonym="ECK2626; JW2611; std; yfjN" /db_xref="EcoGene:EG13200" /db_xref="GeneID:947107" CDS 2765918..2766991 /gene="rnlA" /locus_tag="b2630" /gene_synonym="ECK2626; JW2611; std; yfjN" /function="Phage or Prophage Related" /note="putative cell division protein" /codon_start=1 /transl_table=11 /product="CP4-57 prophage; RNase LS" /protein_id="NP_417119.1" /db_xref="GI:16130548" /db_xref="ASAP:ABE-0008659" /db_xref="UniProtKB/Swiss-Prot:P52129" /db_xref="EcoGene:EG13200" /db_xref="GeneID:947107" /translation="MTIRSYKNLNLVRANIETESRQFIENKNYSIQSIGPMPGSRAGL RVVFTRPGVNLATVDIFYNGDGSTTIQYLTGANRSLGQELADHLFETINPAEFEQVNM VLQGFVETSVLPVLELSADESHIEFREHSRNAHTVVWKIISTSYQDELTVSLHITTGK LQIQGRPLSCYRVFTFNLAALLDLQGLEKVLIRQEDGKANIVQQEVARTYLQTVMADA YPHLHVTAEKLLVSGLCVKLAAPDLPDYCMLLYPELRTIEGVLKSKMSGLGMPVQQPA GFGTYFDKPAAHYILKPQFAATLRPEQINIISTAYTFFNVERHSLFHMETVVDASRMI SDMARLMGKATRAWGIIKDLYIV" gene 2766984..2767355 /gene="rnlB" /locus_tag="b2631" /gene_synonym="ECK2627; JW5418; yfjO" /db_xref="EcoGene:EG13201" /db_xref="GeneID:947113" CDS 2766984..2767355 /gene="rnlB" /locus_tag="b2631" /gene_synonym="ECK2627; JW5418; yfjO" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-57 prophage; uncharacterized protein" /protein_id="NP_417120.2" /db_xref="GI:90111470" /db_xref="ASAP:ABE-0008665" /db_xref="UniProtKB/Swiss-Prot:P52130" /db_xref="EcoGene:EG13201" /db_xref="GeneID:947113" /translation="MFEITGINVSGALKAVVMATGFENPLSSVNEIETKLSALLGSET TGEILFDLLCANGPEWNRFVTLEMKYGRIMLDTAKIIDEQDVPTHILSKLTFTLRNHP EYLEASVLSPDDVRQVLSMDF" gene 2767710..2768573 /gene="yfjP" /locus_tag="b2632" /gene_synonym="ECK2628; JW5419" /db_xref="EcoGene:EG13202" /db_xref="GeneID:947124" CDS 2767710..2768573 /gene="yfjP" /locus_tag="b2632" /gene_synonym="ECK2628; JW5419" /function="Phage or Prophage Related" /note="putative GTP-binding protein" /codon_start=1 /transl_table=11 /product="CP4-57 prophage; 50S ribosome-binding GTPase family protein" /protein_id="YP_026173.1" /db_xref="GI:49176249" /db_xref="ASAP:ABE-0008669" /db_xref="UniProtKB/Swiss-Prot:P52131" /db_xref="EcoGene:EG13202" /db_xref="GeneID:947124" /translation="MKNFEVLQPLQNSLSGLPLWVSERILQQINQLTHYEPVIGIMGK TGAGKSSLCNALFAGEVSPVSDVAACTRDPLRFRLQIGEHFMTIVDLPGVGESGVRDT EYAALYREQLPRLDLILWLIKADDRALATDEHFYRQVIGEAYRHKMLFVISQSDKAEP TSGGNILSTEQKQNISRKICLLHELFQPVHPVCAVSVRLQWGLRVMAERMIKCLPREA SSPVVALLQHPFRTTVAREQARDDFGETVGAILDTVSTFPLIPAPVRTIIQAVRSSVV SVARAVWDFFF" gene 2768665..2769486 /gene="yfjQ" /locus_tag="b2633" /gene_synonym="ECK2629; JW2614" /db_xref="EcoGene:EG13203" /db_xref="GeneID:947127" CDS 2768665..2769486 /gene="yfjQ" /locus_tag="b2633" /gene_synonym="ECK2629; JW2614" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-57 prophage; uncharacterized protein" /protein_id="NP_417122.1" /db_xref="GI:16130551" /db_xref="ASAP:ABE-0008673" /db_xref="UniProtKB/Swiss-Prot:P52132" /db_xref="EcoGene:EG13203" /db_xref="GeneID:947127" /translation="MTRLASRFGAANLIRRDRPLTREELFRVVPSVFSEDKHESRSER YTYIPTISLLDSLQREGFQPFFACQTRVRDPRRREHTKHMLRLRREGQITGKQVPEII LLNSHDGTSSYQMLPGMFRAVCQNGLVCGESFGEVRVPHKGDVVSQVIEGAYEVLGIF ERVEEKRDAMQSLLLPPPVQQALAKAALTYRFGEDHQPVTESQILSPRRWQDESNDLW TTYQRIQENLIKGGLSGRNAKGGRTHTRAVRGIDGDVKLNRALWVMAETLLTQLQ" gene 2769703..2770404 /gene="yfjR" /locus_tag="b2634" /gene_synonym="ECK2630; JW2615" /db_xref="EcoGene:EG13204" /db_xref="GeneID:947309" CDS 2769703..2770404 /gene="yfjR" /locus_tag="b2634" /gene_synonym="ECK2630; JW2615" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-57 prophage; putative DNA-binding transcriptional regulator" /protein_id="NP_417123.1" /db_xref="GI:16130552" /db_xref="ASAP:ABE-0008676" /db_xref="UniProtKB/Swiss-Prot:P52133" /db_xref="EcoGene:EG13204" /db_xref="GeneID:947309" /translation="MTQAERRHDRLAVRLSLIISRLVAGETLSVRKLAAEFGVSVRTL RRDFRERLMYLDLEYQSGYCRLRTAGSEMQMVPDVLIFAHRSGLAGLFPGLDRRLVNA LLMCDESPCVIAPANPVPSPSGALSFWRLIQAITGRRRVTLIAEGRRCERLAPCRLLI HQQTWYLVAEHEGHIAVFTLDEIHLIQPLQETFRRNDSLCRLVEDPVFIQALPHFRFI QHSLLTFVPADSPPE" gene 2770445..2770681 /gene="ypjK" /locus_tag="b2635" /gene_synonym="ECK2631; JW5888" /db_xref="EcoGene:EG14379" /db_xref="GeneID:2847710" CDS 2770445..2770681 /gene="ypjK" /locus_tag="b2635" /gene_synonym="ECK2631; JW5888" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-57 prophage; putative inner membrane protein" /protein_id="YP_026174.2" /db_xref="GI:90111471" /db_xref="ASAP:ABE-0008678" /db_xref="UniProtKB/Swiss-Prot:P52134" /db_xref="EcoGene:EG14379" /db_xref="GeneID:2847710" /translation="MPVIAIIAIVIIVIILNKTGVSDSLTALTLATVAALLTGGGAAG AASVALTPFVGVPVGIFVGIYVFAKVVRLISGKK" gene 2770681..2771124 /gene="yfjS" /locus_tag="b2636" /gene_synonym="ECK2632; JW5921" /db_xref="EcoGene:EG13205" /db_xref="GeneID:945668" CDS 2770681..2771124 /gene="yfjS" /locus_tag="b2636" /gene_synonym="ECK2632; JW5921" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-57 prophage; uncharacterized protein" /protein_id="NP_417124.4" /db_xref="GI:90111472" /db_xref="ASAP:ABE-0008680" /db_xref="UniProtKB/Swiss-Prot:O52982" /db_xref="EcoGene:EG13205" /db_xref="GeneID:945668" /translation="MKRKTLPLLALVATSLFLSACDDRSDDLKAISKFKDLTPPRFSD VVSRQDDVSEEWSQVGFSSGLTLQVLRTRESPDGCEGGSYYYLVDMEEKTVQPLMNAL CIADNIKLEYHEVTDPYTKEKYFEYSHDGKLMGRLLIPSNPDNRE" gene 2771148..2771615 /gene="yfjT" /locus_tag="b2637" /gene_synonym="ECK2633; JW2618" /db_xref="EcoGene:EG13206" /db_xref="GeneID:947616" CDS 2771148..2771615 /gene="yfjT" /locus_tag="b2637" /gene_synonym="ECK2633; JW2618" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-57 prophage; putative periplasmic protein" /protein_id="NP_417125.1" /db_xref="GI:16130554" /db_xref="ASAP:ABE-0008683" /db_xref="UniProtKB/Swiss-Prot:P52135" /db_xref="EcoGene:EG13206" /db_xref="GeneID:947616" /translation="MKIRSLSRFVLASTMFASFTASAVPGLWQQGYGQGNAEYSVTDA SGKMFTINCTGNPDQNGIYQHSVFLILAGDKTVSSHDDSTGITVVMDHKQYAIPSTLG WRNGDNAWFSFIMDIRKARQFDVYVNDQKVGSFNPDVRNAQKVLPTLADCTND" gene complement(2772002..2772154) /gene="yfjU" /locus_tag="b2638" /gene_synonym="ECK2634; JW2619" /pseudo /db_xref="EcoGene:EG13207" /db_xref="GeneID:945062" CDS complement(2772002..2772154) /gene="yfjU" /locus_tag="b2638" /gene_synonym="ECK2634; JW2619" /note="CP4-57 prophage; conserved protein;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0008685" /db_xref="UniProtKB/Swiss-Prot:P0CF86" /db_xref="EcoGene:EG13207" /db_xref="GeneID:945062" gene complement(2772167..2773182) /gene="yfjV" /locus_tag="b2641" /gene_synonym="ECK2635; JW5922; ypjL; ypjM" /pseudo /db_xref="EcoGene:EG13208" /db_xref="GeneID:947563" CDS complement(join(2772167..2773066,2773066..2773182)) /gene="yfjV" /locus_tag="b2641" /gene_synonym="ECK2635; JW5922; ypjL; ypjM" /note="pseudogene, CP4-57 prophage;Phage or Prophage Related; putative pump protein" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0008687" /db_xref="ASAP:ABE-0008690" /db_xref="ASAP:ABE-0008692" /db_xref="UniProtKB/Swiss-Prot:P52137" /db_xref="EcoGene:EG13208" /db_xref="GeneID:947563" gene 2773318..2775021 /gene="yfjW" /locus_tag="b2642" /gene_synonym="ECK2638; JW2623" /db_xref="EcoGene:EG13209" /db_xref="GeneID:947128" CDS 2773318..2775021 /gene="yfjW" /locus_tag="b2642" /gene_synonym="ECK2638; JW2623" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-57 prophage; putative inner membrane protein" /protein_id="NP_417129.1" /db_xref="GI:16130557" /db_xref="ASAP:ABE-0008699" /db_xref="UniProtKB/Swiss-Prot:P52138" /db_xref="EcoGene:EG13209" /db_xref="GeneID:947128" /translation="MAFVSEREIVRKIFSKKIDFTILAFFYISSIFFLLCSGVLFQYF TAAFTKGNCYECSMKLDYIKQFYFSLETAWYLISAVAVFIASVFIQHRIKAYLTLLAI TWIVLTITDVALIHALDNIAMNNILLNILYNLFGAILLSLFMCLSNSLLFHLNKIKHI PMILSAMIPLVSAIIIAILITAVIYLLFARQAVEIEMDISEGSDIAYVGVKDNEESFG FLNDKKTDTPTYLDVIKNGSLIYNDTQGLSGADIYIVSGCYALPDLLRNVPLDAKKSF LNVKKLEITQKLPMMGFIQGESADVMPKAASRLSLSKQDDKFMLASSVTDSQIKFKSN NAQLMVAFAFMPITTNGILHDYTYDIIINDKKYKIENHVAPLSRLDKNKKMKCEYQQI SDLTNTYNINANYLTGFLLVLKPDDIINYNNSPSVLLKTDFAFYKKTYQKLDKIYDDI SNGKLSSLRATGISQFSINGKHLSLRPESEIIISEGSLYGLVNKSKKIKIYGTADLVF VDNKIMNLRKITYLQSKLEIFGSSIMDILKYIFGLGLLAISIKFIHSYFKNDVNENLF L" gene 2775545..2775816 /gene="ypjI" /locus_tag="b4644" /gene_synonym="ECK4438" /pseudo /db_xref="EcoGene:EG13309" /db_xref="GeneID:5625570" CDS join(2775545..2775724,2775724..2775816) /gene="ypjI" /locus_tag="b4644" /gene_synonym="ECK4438" /note="pseudogene, CP4-57 putative prophage remnant;Phage or Prophage Related" /pseudo /codon_start=1 /transl_table=11 /db_xref="UniProtKB/Swiss-Prot:P58095" /db_xref="EcoGene:EG13309" /db_xref="GeneID:5625570" gene 2775919..2776377 /gene="yfjX" /locus_tag="b2643" /gene_synonym="ECK2639; JW2624" /db_xref="EcoGene:EG13210" /db_xref="GeneID:947126" CDS 2775919..2776377 /gene="yfjX" /locus_tag="b2643" /gene_synonym="ECK2639; JW2624" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-57 prophage; putative antirestriction protein" /protein_id="NP_417130.1" /db_xref="GI:16130558" /db_xref="ASAP:ABE-0008704" /db_xref="UniProtKB/Swiss-Prot:P52139" /db_xref="EcoGene:EG13210" /db_xref="GeneID:947126" /translation="MTTQTQYDLVPANGSEFELSVTQVPDEQHIRFWPQHFGTIPQWI TLEPRIFAWMDRFCDEYCGGIWSFYTLSNGGAFMAPDADGDDKWHLLNGMNGNGAEMS AEAAGIAVCLIEYSHHACLTECDAMTEHYYRLRDYALQHPESSAIMRIID" gene 2776386..2776868 /gene="yfjY" /locus_tag="b2644" /gene_synonym="ECK2640; JW2625" /db_xref="EcoGene:EG13211" /db_xref="GeneID:947125" CDS 2776386..2776868 /gene="yfjY" /locus_tag="b2644" /gene_synonym="ECK2640; JW2625" /function="Phage or Prophage Related" /note="putative DNA repair protein" /codon_start=1 /transl_table=11 /product="CP4-57 prophage; putative DNA repair protein" /protein_id="NP_417131.1" /db_xref="GI:16130559" /db_xref="ASAP:ABE-0008706" /db_xref="UniProtKB/Swiss-Prot:P52140" /db_xref="EcoGene:EG13211" /db_xref="GeneID:947125" /translation="MMEQSLIPQTPVLPLTAQRTVKRALTLLDRHLRETGVAFTSTQA ARDWLKLKMAGLEREEFMMLYLNQQNQLIAHETLFAGSISSTEVHPREVVKRALYFNA AAVILAHNHPSGDTTPSQADKTITQRLVQALQLVDIRVPDHLIVGGRQIYSFAEHGLL " gene 2776877..2777077 /gene="ypjJ" /locus_tag="b4548" /gene_synonym="ECK2641; JW5421" /db_xref="EcoGene:EG14330" /db_xref="GeneID:1450287" CDS 2776877..2777077 /gene="ypjJ" /locus_tag="b4548" /gene_synonym="ECK2641; JW5421" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_588466.1" /db_xref="GI:94541123" /db_xref="ASAP:ABE-0285069" /db_xref="UniProtKB/Swiss-Prot:P58033" /db_xref="EcoGene:EG14330" /db_xref="GeneID:1450287" /translation="MRIISKRRAMTIYRQHPESRIFRYCTGKYQWHGSVCHYTGRDVP DITGVLAVYAERRRTAADRMLD" gene 2777115..2777432 /gene="yfjZ" /locus_tag="b2645" /gene_synonym="ECK2642; JW2626" /db_xref="EcoGene:EG13212" /db_xref="GeneID:947123" CDS 2777115..2777432 /gene="yfjZ" /locus_tag="b2645" /gene_synonym="ECK2642; JW2626" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system" /protein_id="NP_417132.1" /db_xref="GI:16130560" /db_xref="ASAP:ABE-0008709" /db_xref="UniProtKB/Swiss-Prot:P52141" /db_xref="EcoGene:EG13212" /db_xref="GeneID:947123" /translation="MSNTTWGLQRDITPRLGARLVQEGNQLHYLADRASITGKFSDAE CPKLDVVFPHFISQIESMLTTGELNPRHAQCVTLYHNGFTCEADTLGSCGYVYIAVYP TQR" gene 2777453..2777782 /gene="ypjF" /locus_tag="b2646" /gene_synonym="ECK2643; JW2627" /db_xref="EcoGene:EG14284" /db_xref="GeneID:947131" CDS 2777453..2777782 /gene="ypjF" /locus_tag="b2646" /gene_synonym="ECK2643; JW2627" /function="Phage or Prophage Related" /codon_start=1 /transl_table=11 /product="CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system" /protein_id="NP_417133.1" /db_xref="GI:16130561" /db_xref="ASAP:ABE-0008711" /db_xref="UniProtKB/Swiss-Prot:Q46953" /db_xref="EcoGene:EG14284" /db_xref="GeneID:947131" /translation="MNTLPATISQAAKPCLSPVAVWQMLLTRLLEQHYGLTLNDTPFS DETVIKEHIDAGITLADAVNFLVEKYELVRIDHRGFSWQQQSPYISVVDILRARRSTG LLKTNVK" gene 2777972..2777985 /gene="psaA" /locus_tag="b4645" /gene_synonym="ECK4465" /pseudo /db_xref="EcoGene:EG31174" /db_xref="GeneID:5625571" tmRNA 2777972..2777985 /gene="psaA" /locus_tag="b4645" /gene_synonym="ECK4465" /note="CP4-57 attachment site duplication, ssrA pseudogene" /pseudo /db_xref="EcoGene:EG31174" /db_xref="GeneID:5625571" gene complement(2778146..2782726) /gene="ypjA" /locus_tag="b2647" /gene_synonym="ECK2644; JW5422" /db_xref="EcoGene:EG13213" /db_xref="GeneID:948630" CDS complement(2778146..2782726) /gene="ypjA" /locus_tag="b2647" /gene_synonym="ECK2644; JW5422" /function="putative transport; Not classified" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="adhesin-like autotransporter" /protein_id="NP_417134.2" /db_xref="GI:90111474" /db_xref="ASAP:ABE-0008713" /db_xref="UniProtKB/Swiss-Prot:P52143" /db_xref="EcoGene:EG13213" /db_xref="GeneID:948630" /translation="MNRTSPYYCRRSVLSLLISALIYAPPGMAAFTTNVIGVVNDETV DGNQKVDERGTTNNTHIINHGQQNVHGGVSNGSLIESGGYQDIGSHNNFVGQANNTTI NGGRQSIHDGGISTGTTIESGNQDVYKGGISNGTTIKGGASRVEGGSANGILIDGGSQ IVKVQGHADGTTINKSGSQDVVQGSLATNTTINGGRQYVEQSTVETTTIKNGGEQRVY ESRALDTTIEGGTQSLNSKSTAKNTHIYSGGTQIVDNTSTSDVIEVYSGGVLDVRGGT ATNVTQHDGAILKTNTNGTTVSGTNSEGAFSIHNHVADNVLLENGGHLDINAYGSANK TIIKDKGTMSVLTNAKADATRIDNGGVMDVAGNATNTIINGGTQNINNYGIATGTNIN SGTQNIKSGGKADTTIISSGSRQVVEKDGTAIGSNISAGGSLIVYTGGIAHGVNQETG SALVANTGAGTDIEGYNKLSHFTITGGEANYVVLENTGELTVVAKTSAKNTTIDTGGK LIVQKEAKTDSTRLNNGGVLEVQDGGEAKHVEQQSGGALIASTTSGTLIEGTNSYGDA FYIRNSEAKNVVLENAGSLTVVTGSRAVDTIINANGKMDVYGKDVGTVLNSAGTQTIY ASATSDKANIKGGKQTVYGLATEANIESGEQIVDGGSTEKTHINGGTQTVQNYGKAIN TDIVSGLQQIMANGTAEGSIINGGSQVVNEGGLAENSVLNDGGTLDVREKGSATGIQQ SSQGALVATTRATRVTGTRADGVAFSIEQGAANNILLANGGVLTVESDTSSDKTQVNM GGREIVKTKATATGTTLTGGEQIVEGVANETTINDGGIQTVSANGEAIKTKINEGGTL TVNDNGKATDIVQNSGAALQTSTANGIEISGTHQYGTFSISGNLATNMLLENGGNLLV LAGTEARDSTVGKGGAMQNLGQDSATKVNSGGQYTLGRSKDEFQALARAEDLQVAGGT AIVYAGTLADASVSGATGSLSLMTPRDNVTPVKLEGAVRITDSATLTLGNGVDTTLAD LTAASRGSVWLNSNNSCAGTSNCEYRVNSLLLNDGDVYLSAQTAAPATTNGIYNTLTT NELSGSGNFYLHTNVAGSRGDQLVVNNNATGNFKIFVQDTGVSPQSDDAMTLVKTGGG DASFTLGNTGGFVDLGTYEYVLKSDGNSNWNLTNDVKPNPDPIPNPKPDPKPDPKPDP NPKPDPTPDPTPTPVPEKRITPSTAAVLNMAATLPLVFDAELNSIRERLNIMKASPHN NNVWGATYNTRNNVTTDAGAGFEQTLTGMTVGIDSRNDIPEGITTLGAFMGYSHSHIG FDRGGHGSVGSYSLGGYASWEHESGFYLDGVVKLNRFKSNVAGKMSSGGAANGSYHSN GLGGHIETGMRFTDGNWNLTPYASLTGFTADNPEYHLSNGMKSKSVDTRSIYRELGAT LSYNMRLGNGMEVEPWLKAAVRKEFVDDNRVKVNSDGNFVNYLSGRRGIYQAGIKASF SSTLSGHLGVGYSHSAGVESPWNAVAGVNWSF" gene complement(2783065..2783304) /gene="pinH" /locus_tag="b2648" /gene_synonym="ECK2645; JW5423; ypjG" /pseudo /db_xref="EcoGene:EG14310" /db_xref="GeneID:947250" CDS complement(2783065..2783304) /gene="pinH" /locus_tag="b2648" /gene_synonym="ECK2645; JW5423; ypjG" /note="pseudogene, invertase resolvase family" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0008721" /db_xref="UniProtKB/Swiss-Prot:P76611" /db_xref="EcoGene:EG14310" /db_xref="GeneID:947250" gene complement(2783638..2785011) /gene="ypjC" /locus_tag="b2650" /gene_synonym="ECK2646; JW2629; ypjB" /pseudo /db_xref="EcoGene:EG13519" /db_xref="GeneID:947640" CDS complement(2783638..2785011) /gene="ypjC" /locus_tag="b2650" /gene_synonym="ECK2646; JW2629; ypjB" /note="pseudogene" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0008724" /db_xref="ASAP:ABE-0008727" /db_xref="UniProtKB/Swiss-Prot:P76613" /db_xref="EcoGene:EG13519" /db_xref="GeneID:947640" gene complement(2785762..2785837) /gene="ileY" /locus_tag="b2652" /gene_synonym="ECK2648; JWR0056" /db_xref="EcoGene:EG31121" /db_xref="GeneID:947163" tRNA complement(2785762..2785837) /gene="ileY" /locus_tag="b2652" /gene_synonym="ECK2648; JWR0056" /product="tRNA-Ile" /note="anticodon: GAU" /db_xref="ASAP:ABE-0008733" /db_xref="EcoGene:EG31121" /db_xref="GeneID:947163" gene 2786397..2788649 /gene="ygaQ" /locus_tag="b4462" /gene_synonym="ECK2649; JW5425; ygaR; yqaC; yqaD" /pseudo /db_xref="EcoGene:EG13520" /db_xref="GeneID:2847762" CDS 2786397..2788649 /gene="ygaQ" /locus_tag="b4462" /gene_synonym="ECK2649; JW5425; ygaR; yqaC; yqaD" /note="uncharacterized protein; putative enzyme" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0008739" /db_xref="ASAP:ABE-0008747" /db_xref="ASAP:ABE-0008751" /db_xref="ASAP:ABE-0174112" /db_xref="UniProtKB/Swiss-Prot:P76616" /db_xref="EcoGene:EG13520" /db_xref="GeneID:2847762" gene 2788985..2789962 /gene="csiD" /locus_tag="b2659" /gene_synonym="csi-12; ECK2653; JW5427; ygaT" /db_xref="EcoGene:EG13523" /db_xref="GeneID:948076" CDS 2788985..2789962 /gene="csiD" /locus_tag="b2659" /gene_synonym="csi-12; ECK2653; JW5427; ygaT" /experiment="N-terminus verified by Edman degradation: PMID 9512707" /codon_start=1 /transl_table=11 /product="carbon starvation protein" /protein_id="NP_417145.4" /db_xref="GI:90111476" /db_xref="ASAP:ABE-0008754" /db_xref="UniProtKB/Swiss-Prot:P76621" /db_xref="EcoGene:EG13523" /db_xref="GeneID:948076" /translation="MNALTAVQNNAVDSGQDYSGFTLTPSAQSPRLLELTFTEQTTKQ FLEQVAEWPVQALEYKSFLRFRVAKILDDLCANQLQPLLLKTLLNRAEGALLINAVGV DDVKQADEMVKLATAVAHLIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELH NDGTYVEEITDYVLMMKIDEQNMQGGNSLLLHLDDWEHLDNYFRHPLARRPMRFAAPP SKNVSKDVFHPVFDVDQQGRPVMRYIDQFVQPKDFEEGVWLSELSDAIETSKGILSVP VPVGKFLLINNLFWLHGRDRFTPHPDLRRELMRQRGYFAYASNHYQTHQ" gene 2789982..2791250 /gene="lhgO" /locus_tag="b2660" /gene_synonym="ECK2654; JW2635; ygaF" /db_xref="EcoGene:EG12387" /db_xref="GeneID:948069" CDS 2789982..2791250 /gene="lhgO" /locus_tag="b2660" /gene_synonym="ECK2654; JW2635; ygaF" /codon_start=1 /transl_table=11 /product="L-2-hydroxyglutarate oxidase" /protein_id="NP_417146.2" /db_xref="GI:90111477" /db_xref="ASAP:ABE-0008756" /db_xref="UniProtKB/Swiss-Prot:P37339" /db_xref="EcoGene:EG12387" /db_xref="GeneID:948069" /translation="MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTG HNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQNGIRYDNCGKMLVATSDLEMERM RALWERTAANGIEREWLNADELREREPNITGLGGIFVPSSGIVSYRDVTAAMAKIFQS RGGEIIYNAEVSGLNEHKNGVVIRTRQGGEYEASTLISCSGLMADRLVKMLGLEPGFI ICPFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKR EGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLS LSDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRTIHTCNAPSPAATSAIPIGAHIVSK VQTLLASQSNPGRTLRAARSVDALHAAFNQ" gene 2791273..2792721 /gene="gabD" /locus_tag="b2661" /gene_synonym="ECK2655; JW2636" /db_xref="EcoGene:EG11329" /db_xref="GeneID:948060" CDS 2791273..2792721 /gene="gabD" /locus_tag="b2661" /gene_synonym="ECK2655; JW2636" /EC_number="1.2.1.16" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_process="GO:0009450 - gamma-aminobutyric acid catabolic process; GO:0009447 - putrescine catabolic process" /note="succinate-semialdehyde dehydrogenase, NADP-dependent activity" /codon_start=1 /transl_table=11 /product="succinate-semialdehyde dehydrogenase I, NADP-dependent" /protein_id="NP_417147.1" /db_xref="GI:16130575" /db_xref="ASAP:ABE-0008758" /db_xref="UniProtKB/Swiss-Prot:P25526" /db_xref="EcoGene:EG11329" /db_xref="GeneID:948060" /translation="MKLNDSNLFRQQALINGEWLDANNGEAIDVTNPANGDKLGSVPK MGADETRAAIDAANRALPAWRALTAKERATILRNWFNLMMEHQDDLARLMTLEQGKPL AEAKGEISYAASFIEWFAEEGKRIYGDTIPGHQADKRLIVIKQPIGVTAAITPWNFPA AMITRKAGPALAAGCTMVLKPASQTPFSALALAELAIRAGVPAGVFNVVTGSAGAVGN ELTSNPLVRKLSFTGSTEIGRQLMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEG ALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLQQAVSKLHIGDGLDNGVTIGPLIDE KAVAKVEEHIADALEKGARVVCGGKAHERGGNFFQPTILVDVPANAKVSKEETFGPLA PLFRFKDEADVIAQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVA PFGGIKASGLGREGSKYGIEDYLEIKYMCIGL" gene 2792735..2794015 /gene="gabT" /locus_tag="b2662" /gene_synonym="ECK2656; JW2637" /db_xref="EcoGene:EG10361" /db_xref="GeneID:948067" CDS 2792735..2794015 /gene="gabT" /locus_tag="b2662" /gene_synonym="ECK2656; JW2637" /EC_number="2.6.1.19" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /experiment="N-terminus verified by Edman degradation: PMID 2178550" /GO_process="GO:0009450 - gamma-aminobutyric acid catabolic process; GO:0009447 - putrescine catabolic process" /note="4-aminobutyrate aminotransferase activity" /codon_start=1 /transl_table=11 /product="4-aminobutyrate aminotransferase, PLP-dependent" /protein_id="NP_417148.1" /db_xref="GI:16130576" /db_xref="ASAP:ABE-0008760" /db_xref="UniProtKB/Swiss-Prot:P22256" /db_xref="EcoGene:EG10361" /db_xref="GeneID:948067" /translation="MNSNKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGREYL DFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFA KKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMG LMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASS PAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGFPL AGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDG LLAIAEKHPEIGDVRGLGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGP YYNVLRILVPLTIEDAQIRQGLEIISQCFDEAKQ" repeat_region 2794028..2794163 /note="REP191 (repetitive extragenic palindromic) element; contains 3 REP sequences" gene 2794253..2795653 /gene="gabP" /locus_tag="b2663" /gene_synonym="ECK2657; JW2638" /db_xref="EcoGene:EG11330" /db_xref="GeneID:948049" CDS 2794253..2795653 /gene="gabP" /locus_tag="b2663" /gene_synonym="ECK2657; JW2638" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="transport permease protein of gamma-aminobutyrate" /codon_start=1 /transl_table=11 /product="gamma-aminobutyrate transporter" /protein_id="NP_417149.1" /db_xref="GI:16130577" /db_xref="ASAP:ABE-0008763" /db_xref="UniProtKB/Swiss-Prot:P25527" /db_xref="EcoGene:EG11330" /db_xref="GeneID:948049" /translation="MGQSSQPHELGGGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAG PAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW VLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKV IAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAE IVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSV LELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTP YVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAE GSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQQLEVISTGLLAIGIICTVPIMAR WKKLVLWQKTPVHNTR" gene 2795674..2796336 /gene="csiR" /locus_tag="b2664" /gene_synonym="ECK2658; gabC; JW2639; ygaE" /db_xref="EcoGene:EG12386" /db_xref="GeneID:948055" CDS 2795674..2796336 /gene="csiR" /locus_tag="b2664" /gene_synonym="ECK2658; gabC; JW2639; ygaE" /function="regulator; Not classified" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator" /codon_start=1 /transl_table=11 /product="transcriptional repressor of csiD" /protein_id="NP_417150.4" /db_xref="GI:90111478" /db_xref="ASAP:ABE-0008765" /db_xref="UniProtKB/Swiss-Prot:P37338" /db_xref="EcoGene:EG12386" /db_xref="GeneID:948055" /translation="MTITSLDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLR EALSQLVAERLVTVVNQKGYRVASMSEQELLDIFDARANMEAMLVSLAIARGGDEWEA DVLAKAHLLSKLEACDASEKMLDEWDLRHQAFHTAIVAGCGSHYLLQMRERLFDLAAR YRFIWLRRTVLSVEMLEDKHDQHQTLTAAVLARDTARASELMRQHLLTPIPIIQQAMA GN" gene complement(2796337..2796786) /gene="ygaU" /locus_tag="b2665" /gene_synonym="ECK2659; JW2640; yzzM" /db_xref="EcoGene:EG12675" /db_xref="GeneID:947144" CDS complement(2796337..2796786) /gene="ygaU" /locus_tag="b2665" /gene_synonym="ECK2659; JW2640; yzzM" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_417151.1" /db_xref="GI:16130579" /db_xref="ASAP:ABE-0008767" /db_xref="UniProtKB/Swiss-Prot:P0ADE6" /db_xref="EcoGene:EG12675" /db_xref="GeneID:947144" /translation="MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLNKTGIPDAD KVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGIASVDDQVKTATPATASQFYTVK SGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPEE" gene complement(2796870..2797028) /gene="yqaE" /locus_tag="b2666" /gene_synonym="ECK2660; JW2641" /db_xref="EcoGene:EG14313" /db_xref="GeneID:947138" CDS complement(2796870..2797028) /gene="yqaE" /locus_tag="b2666" /gene_synonym="ECK2660; JW2641" /codon_start=1 /transl_table=11 /product="cyaR sRNA-regulated protein" /protein_id="NP_417152.1" /db_xref="GI:16130580" /db_xref="ASAP:ABE-0008770" /db_xref="UniProtKB/Swiss-Prot:P0AE42" /db_xref="EcoGene:EG14313" /db_xref="GeneID:947138" /translation="MGFWRIVITIILPPLGVLLGKGFGWAFIINILLTLLGYIPGLIH AFWVQTRD" gene 2797211..2797510 /gene="ygaV" /locus_tag="b2667" /gene_synonym="ECK2661; JW2642" /db_xref="EcoGene:EG13524" /db_xref="GeneID:947136" CDS 2797211..2797510 /gene="ygaV" /locus_tag="b2667" /gene_synonym="ECK2661; JW2642" /codon_start=1 /transl_table=11 /product="tributyltin-inducible repressor of ygaVP" /protein_id="NP_417153.1" /db_xref="GI:16130581" /db_xref="ASAP:ABE-0008784" /db_xref="UniProtKB/Swiss-Prot:P77295" /db_xref="EcoGene:EG13524" /db_xref="GeneID:947136" /translation="MTELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGEL TRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKNVYCP" gene 2797520..2798044 /gene="ygaP" /locus_tag="b2668" /gene_synonym="ECK2662; JW2643" /db_xref="EcoGene:EG13288" /db_xref="GeneID:947135" CDS 2797520..2798044 /gene="ygaP" /locus_tag="b2668" /gene_synonym="ECK2662; JW2643" /codon_start=1 /transl_table=11 /product="DUF2892 family inner membrane rhodanese" /protein_id="NP_417154.1" /db_xref="GI:16130582" /db_xref="ASAP:ABE-0008786" /db_xref="UniProtKB/Swiss-Prot:P55734" /db_xref="EcoGene:EG13288" /db_xref="GeneID:947135" /translation="MALTTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLS VLEQSGLPAKLRHEQIIFHCQAGKRTSNNADKLAAIAAPAEIFLLEDGIDGWKKAGLP VAVNKSQPLPLMRQVQIAAGGLILIGVVLGYTVNSGFFLLSGFVGAGLLFAGISGFCG MARLLDKMPWNQRA" repeat_region 2798053..2798082 /note="REP192 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2798091..2798495) /gene="stpA" /locus_tag="b2669" /gene_synonym="ECK2663; hnsB; hsm-3; JW2644; rsv" /db_xref="EcoGene:EG11554" /db_xref="GeneID:947130" CDS complement(2798091..2798495) /gene="stpA" /locus_tag="b2669" /gene_synonym="ECK2663; hnsB; hsm-3; JW2644; rsv" /function="regulator; Basic proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006457 - protein folding" /note="DNA-binding protein; H-NS-like protein; chaperone activity; RNA splicing?" /codon_start=1 /transl_table=11 /product="DNA binding protein, nucleoid-associated" /protein_id="NP_417155.1" /db_xref="GI:16130583" /db_xref="ASAP:ABE-0008788" /db_xref="UniProtKB/Swiss-Prot:P0ACG1" /db_xref="EcoGene:EG11554" /db_xref="GeneID:947130" /translation="MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEE EQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDV NGETKTWTGQGRTPKPIAQALAEGKSLDDFLI" gene 2799164..2799613 /gene="alaE" /locus_tag="b2670" /gene_synonym="ECK2664; JW2645; ygaW" /db_xref="EcoGene:EG13525" /db_xref="GeneID:947147" CDS 2799164..2799613 /gene="alaE" /locus_tag="b2670" /gene_synonym="ECK2664; JW2645; ygaW" /codon_start=1 /transl_table=11 /product="alanine exporter, alanine-inducible, stress-responsive" /protein_id="NP_417156.1" /db_xref="GI:16130584" /db_xref="ASAP:ABE-0008793" /db_xref="UniProtKB/Swiss-Prot:P64550" /db_xref="EcoGene:EG13525" /db_xref="GeneID:947147" /translation="MFSPQSRLRHAVADTFAMVVYCSVVNMCIEVFLSGMSFEQSFYS RLVAIPVNILIAWPYGMYRDLFMRAARKVSPSGWIKNLADILAYVTFQSPVYVAILLV VGADWHQIMAAVSSNIVVSMLMGAVYGYFLDYCRRLFKVSRYQQVKA" gene complement(2799650..2799994) /gene="ygaC" /locus_tag="b2671" /gene_synonym="ECK2665; JW2646" /db_xref="EcoGene:EG12201" /db_xref="GeneID:947156" CDS complement(2799650..2799994) /gene="ygaC" /locus_tag="b2671" /gene_synonym="ECK2665; JW2646" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_417157.1" /db_xref="GI:16130585" /db_xref="ASAP:ABE-0008795" /db_xref="UniProtKB/Swiss-Prot:P0AD53" /db_xref="EcoGene:EG12201" /db_xref="GeneID:947156" /translation="MYLRPDEVARVLEKVGFTVDVVTQKAYGYRRGENYVYVNREARM GRTALVIHPTLKERSSTLAEPASDIKTCDHYQQFPLYLAGERHEHYGIPHGFSSRVAL ERYLNGLFGEAS" gene 2800146..2800475 /gene="ygaM" /locus_tag="b2672" /gene_synonym="ECK2666; JW2647" /db_xref="EcoGene:EG13285" /db_xref="GeneID:947157" CDS 2800146..2800475 /gene="ygaM" /locus_tag="b2672" /gene_synonym="ECK2666; JW2647" /codon_start=1 /transl_table=11 /product="putative membrane-anchored DUF883 family ribosome-binding protein" /protein_id="NP_417158.4" /db_xref="GI:459201372" /db_xref="ASAP:ABE-0008799" /db_xref="UniProtKB/Swiss-Prot:P0ADQ7" /db_xref="EcoGene:EG13285" /db_xref="GeneID:947157" /translation="MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAE AARSKAQALLKETRARMHGRTRVQQAARDAVGCADSFVRERPWCSVGTAAAVGIFIGA LLSMRKS" gene 2800723..2800968 /gene="nrdH" /locus_tag="b2673" /gene_synonym="ECK2667; JW2648; ygaN" /db_xref="EcoGene:EG13286" /db_xref="GeneID:947161" CDS 2800723..2800968 /gene="nrdH" /locus_tag="b2673" /gene_synonym="ECK2667; JW2648; ygaN" /function="enzyme; Biosynthesis of cofactors, carriers: Thioredoxin, glutaredoxin, glutathione" /note="glutaredoxin-like protein; hydrogen donor" /codon_start=1 /transl_table=11 /product="hydrogen donor for NrdEF electron transport system; glutaredoxin-like protein" /protein_id="NP_417159.1" /db_xref="GI:16130587" /db_xref="ASAP:ABE-0008802" /db_xref="UniProtKB/Swiss-Prot:P0AC65" /db_xref="EcoGene:EG13286" /db_xref="GeneID:947161" /translation="MRITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALR AQGFRQLPVVIAGDLSWSGFRPDMINRLHPAPHAASA" gene 2800965..2801375 /gene="nrdI" /locus_tag="b2674" /gene_synonym="ECK2668; JW2649; ygaO" /db_xref="EcoGene:EG13287" /db_xref="GeneID:947158" CDS 2800965..2801375 /gene="nrdI" /locus_tag="b2674" /gene_synonym="ECK2668; JW2649; ygaO" /function="enzyme; Biosynthesis of cofactors, carriers: Thioredoxin, glutaredoxin, glutathione" /codon_start=1 /transl_table=11 /product="NrdEF cluster assembly flavodoxin" /protein_id="NP_417160.1" /db_xref="GI:16130588" /db_xref="ASAP:ABE-0008804" /db_xref="UniProtKB/Swiss-Prot:P0A772" /db_xref="EcoGene:EG13287" /db_xref="GeneID:947158" /translation="MSQLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYIL IVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCG VPWLYRFELMGTQSDIENVRKGVTEFWQRQPQNA" gene 2801348..2803492 /gene="nrdE" /locus_tag="b2675" /gene_synonym="ECK2669; JW2650" /db_xref="EcoGene:EG20257" /db_xref="GeneID:947155" CDS 2801348..2803492 /gene="nrdE" /locus_tag="b2675" /gene_synonym="ECK2669; JW2650" /EC_number="1.17.4.1" /function="enzyme; Central intermediary metabolism: Nucleotide interconversions" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="ribonucleoside-diphosphate reductase 2, alpha subunit" /protein_id="NP_417161.1" /db_xref="GI:16130589" /db_xref="ASAP:ABE-0008806" /db_xref="UniProtKB/Swiss-Prot:P39452" /db_xref="EcoGene:EG20257" /db_xref="GeneID:947155" /translation="MATTTAECLTQETMDYHALNAMLNLYDSAGRIQFDKDRQAVDAF IATHVRPNSVTFSSQQQRLNWLVNEGYYDESVLNRYSRDFVITLFTHAHTSGFRFQTF LGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGDETLALQLTDEMLSGRFQPA TPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAG APIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKREN ADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDVERVYGKPFADVAISQHYDEL VADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPIAGRINMSNLCSEIL QVNSASEYDENLDYTRTGHDISCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSH IRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRT SMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFTRSGITLPTREMW AQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPA PFMTNENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIY AWRKGIKTLYYIRLRQMALEGTEIEGCVSCAL" gene 2803502..2804461 /gene="nrdF" /locus_tag="b2676" /gene_synonym="ECK2670; JW2651; ygaD" /db_xref="EcoGene:EG12381" /db_xref="GeneID:947149" CDS 2803502..2804461 /gene="nrdF" /locus_tag="b2676" /gene_synonym="ECK2670; JW2651; ygaD" /EC_number="1.17.4.1" /function="enzyme; Central intermediary metabolism: Nucleotide interconversions" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /note="ribonucleoside-diphosphate reductase 2, beta chain, frag" /codon_start=1 /transl_table=11 /product="ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein" /protein_id="NP_417162.1" /db_xref="GI:16130590" /db_xref="ASAP:ABE-0008808" /db_xref="UniProtKB/Swiss-Prot:P37146" /db_xref="EcoGene:EG12381" /db_xref="GeneID:947149" /translation="MKLSRISAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPA WQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHA RSYSSIFSTLCQTKDVDAAYAWSEENAPLQRKAQIIQQHYRGDDPLKKKIASVFLESF LFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREEL KSFAFDLLLELYDNELQYTDELYAETPWADDVKAFLCYNANKALMNLGYEPLFPAEMA EVNPAILAALSPNADENHDFFSGSGSSYVMGKAVETEDEDWNF" gene 2804815..2806017 /gene="proV" /locus_tag="b2677" /gene_synonym="ECK2671; JW2652; osrA; proU" /db_xref="EcoGene:EG10771" /db_xref="GeneID:947148" CDS 2804815..2806017 /gene="proV" /locus_tag="b2677" /gene_synonym="ECK2671; JW2652; osrA; proU" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0015596 - glycine betaine/proline porter activity" /GO_process="GO:0006561 - proline biosynthetic process" /note="ATP-binding component of transport system for glycine, betaine and proline" /codon_start=1 /transl_table=11 /product="glycine betaine/proline ABC transporter periplasmic binding protein" /protein_id="NP_417163.1" /db_xref="GI:16130591" /db_xref="ASAP:ABE-0008814" /db_xref="UniProtKB/Swiss-Prot:P14175" /db_xref="EcoGene:EG10771" /db_xref="GeneID:947148" /translation="MAIKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGV KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELRE VRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTI VFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSA KDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT QQQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCAVPVVDEDQQYVGIISKGMLLRAL DREGVNNG" gene 2806010..2807074 /gene="proW" /locus_tag="b2678" /gene_synonym="ECK2672; JW2653; osrA; proU" /db_xref="EcoGene:EG10772" /db_xref="GeneID:947145" CDS 2806010..2807074 /gene="proW" /locus_tag="b2678" /gene_synonym="ECK2672; JW2653; osrA; proU" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0015596 - glycine betaine/proline porter activity" /GO_process="GO:0006561 - proline biosynthetic process" /note="high-affinity transport system for glycine betaine and proline; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="glycine betaine/proline ABC transporter permease" /protein_id="NP_417164.1" /db_xref="GI:16130592" /db_xref="ASAP:ABE-0008816" /db_xref="UniProtKB/Swiss-Prot:P14176" /db_xref="EcoGene:EG10772" /db_xref="GeneID:947145" /translation="MADQNNPWDTTPAADSAAQSADAWGTPTTAPTDGGGADWLTSTP APNVEHFNILDPFHKTLIPLDSWVTEGIDWVVTHFRPVFQGVRVPVDYILNGFQQLLL GMPAPVAIIVFALIAWQISGVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFCI VIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFA LPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLAL SMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGRDSRSR GNRRWYTTGPVGLLTRPFIK" gene 2807132..2808124 /gene="proX" /locus_tag="b2679" /gene_synonym="ECK2673; JW2654; osrA; proU" /db_xref="EcoGene:EG10773" /db_xref="GeneID:947165" CDS 2807132..2808124 /gene="proX" /locus_tag="b2679" /gene_synonym="ECK2673; JW2654; osrA; proU" /function="transport; Osmotic adaptation" /GO_component="GO:0042597 - periplasmic space" /GO_function="GO:0015596 - glycine betaine/proline porter activity" /GO_process="GO:0006578 - betaine biosynthetic process; GO:0016052 - carbohydrate catabolic process; GO:0006545 - glycine biosynthetic process; GO:0006561 - proline biosynthetic process; GO:0006970 - response to osmotic stress" /note="high-affinity transport system for glycine betaine and proline; periplasmic-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="glycine betaine/proline ABC transporter periplasmic binding protein; cold shock protein" /protein_id="NP_417165.1" /db_xref="GI:16130593" /db_xref="ASAP:ABE-0008818" /db_xref="UniProtKB/Swiss-Prot:P0AFM2" /db_xref="EcoGene:EG10773" /db_xref="GeneID:947165" /translation="MRHSVLFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQ TLLVSRALEKLGYTVNKPSEVDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKK FYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPG WGCEGAINHQLAAYELTNTVTHNQGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNEL KPGKDVVWLQVPFSALPGDKNADTKLPNGANYGFPVSTMHIVANKAWAEKNPAAAKLF AIMQLPVADINAQNAIMHDGKASEGDIQGHVDGWIKAHQQQFDGWVNEALAAQK" repeat_region 2808131..2808214 /note="REP193 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene 2808316..2809493 /gene="ygaY" /locus_tag="b2681" /gene_synonym="ECK2674; JW2655; ygaX" /pseudo /db_xref="EcoGene:EG13527" /db_xref="GeneID:2847696" CDS join(2808316..2808576,2808570..2809493) /gene="ygaY" /locus_tag="b2681" /gene_synonym="ECK2674; JW2655; ygaX" /GO_process="GO:0006950 - response to stress" /note="pseudogene, major facilitator transporter superfamily;putative transport; Not classified; putative transport protein" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0008822" /db_xref="ASAP:ABE-0008824" /db_xref="UniProtKB/Swiss-Prot:P76628" /db_xref="EcoGene:EG13527" /db_xref="GeneID:2847696" gene 2809617..2810354 /gene="ygaZ" /locus_tag="b2682" /gene_synonym="ECK2676; JW2657" /db_xref="EcoGene:EG13528" /db_xref="GeneID:945093" CDS 2809617..2810354 /gene="ygaZ" /locus_tag="b2682" /gene_synonym="ECK2676; JW2657" /codon_start=1 /transl_table=11 /product="putative L-valine exporter, norvaline resistance protein" /protein_id="NP_417167.1" /db_xref="GI:16130594" /db_xref="ASAP:ABE-0008829" /db_xref="UniProtKB/Swiss-Prot:P76630" /db_xref="EcoGene:EG13528" /db_xref="GeneID:945093" /translation="MESPTPQPAPGSATFMEGCKDSLPIVISYIPVAFAFGLNATRLG FSPLESVFFSCIIYAGASQFVITAMLAAGSSLWIAALTVMAMDVRHVLYGPSLRSRII QRLQKSKTALWAFGLTDEVFAAATAKLVRNNRRWSENWMIGIAFSSWSSWVFGTVIGA FSGSGLLQGYPAVEAALGFMLPALFMSFLLASFQRKQSLCVTAALVGALAGVTLFSIP VAILAGIVCGCLTALIQAFWQGAPDEL" gene 2810344..2810679 /gene="ygaH" /locus_tag="b2683" /gene_synonym="ECK2677; JW2658" /db_xref="EcoGene:EG12940" /db_xref="GeneID:945111" CDS 2810344..2810679 /gene="ygaH" /locus_tag="b2683" /gene_synonym="ECK2677; JW2658" /codon_start=1 /transl_table=11 /product="putative L-valine exporter, norvaline resistance protein" /protein_id="NP_417168.1" /db_xref="GI:16130595" /db_xref="ASAP:ABE-0008831" /db_xref="UniProtKB/Swiss-Prot:P43667" /db_xref="EcoGene:EG12940" /db_xref="GeneID:945111" /translation="MSYEVLLLGLLVGVANYCFRYLPLRLRVGNARPTKRGAVGILLD TIGIASICALLVVSTAPEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYG LAWKVMAII" gene 2810770..2811300 /gene="mprA" /locus_tag="b2684" /gene_synonym="ECK2678; emrR; JW2659" /db_xref="EcoGene:EG10603" /db_xref="GeneID:945282" CDS 2810770..2811300 /gene="mprA" /locus_tag="b2684" /gene_synonym="ECK2678; emrR; JW2659" /function="regulator; Plasmid-related functions" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0042493 - response to drug; GO:0006350 - transcription" /note="regulator of plasmid mcrB operon (microcin B17 synthesis)" /codon_start=1 /transl_table=11 /product="transcriptional repressor of microcin B17 synthesis and multidrug efflux" /protein_id="NP_417169.1" /db_xref="GI:16130596" /db_xref="ASAP:ABE-0008834" /db_xref="UniProtKB/Swiss-Prot:P0ACR9" /db_xref="EcoGene:EG10603" /db_xref="GeneID:945282" /translation="MDSSFTPIEQMLKFRASRHEDFPYQEILLTRLCMHMQSKLLENR NKMLKAQGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIE RRESDNDRRCLHLQLTEKGHEFLREVLPPQHNCLHQLWSALSTTEKDQLEQITRKLLS RLDQMEQDGVVLEAMS" gene 2811427..2812599 /gene="emrA" /locus_tag="b2685" /gene_synonym="ECK2679; JW2660" /db_xref="EcoGene:EG11354" /db_xref="GeneID:947166" CDS 2811427..2812599 /gene="emrA" /locus_tag="b2685" /gene_synonym="ECK2679; JW2660" /function="transport; Drug/analog sensitivity" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042493 - response to drug" /note="multidrug resistance secretion protein" /codon_start=1 /transl_table=11 /product="multidrug efflux system" /protein_id="NP_417170.1" /db_xref="GI:16130597" /db_xref="ASAP:ABE-0008838" /db_xref="UniProtKB/Swiss-Prot:P27303" /db_xref="EcoGene:EG11354" /db_xref="GeneID:947166" /translation="MSANAETQTPQQPVKKSGKRKRLLLLLTLLFIIIAVAIGIYWFL VLRHFEETDDAYVAGNQIQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDARQAFE KAKTALASSVRQTHQLMINSKQLQANIEVQKIALAKAQSDYNRRVPLGNANLIGREEL QHARDAVTSAQAQLDVAIQQYNANQAMILGTKLEDQPAVQQAATEVRNAWLALERTRI ISPMTGYVSRRAVQPGAQISPTTPLMAVVPATNMWVDANFKETQIANMRIGQPVTITT DIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELDQKQLEQYP LRIGLSTLVSVNTTNRDGQVLANKVRSTPVAVSTAREISLAPVNKLIDDIVKANAG" gene 2812616..2814154 /gene="emrB" /locus_tag="b2686" /gene_synonym="ECK2680; JW2661" /db_xref="EcoGene:EG11439" /db_xref="GeneID:947167" CDS 2812616..2814154 /gene="emrB" /locus_tag="b2686" /gene_synonym="ECK2680; JW2661" /function="putative transport; Drug/analog sensitivity" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042493 - response to drug" /note="multidrug resistance; probably membrane translocase" /codon_start=1 /transl_table=11 /product="multidrug efflux system protein" /protein_id="NP_417171.1" /db_xref="GI:16130598" /db_xref="ASAP:ABE-0008840" /db_xref="UniProtKB/Swiss-Prot:P0AEJ0" /db_xref="EcoGene:EG11439" /db_xref="GeneID:947167" /translation="MQQQKPLEGAQLVIMTIALSLATFMQVLDSTIANVAIPTIAGNL GSSLSQGTWVITSFGVANAISIPLTGWLAKRVGEVKLFLWSTIAFAIASWACGVSSSL NMLIFFRVIQGIVAGPLIPLSQSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGY ISDNYHWGWIFFINVPIGVAVVLMTLQTLRGRETRTERRRIDAVGLALLVIGIGSLQI MLDRGKELDWFSSQEIIILTVVAVVAICFLIVWELTDDNPIVDLSLFKSRNFTIGCLC ISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGIIPVILSPIIGRFAHKLDMR RLVTFSFIMYAVCFYWRAYTFEPGMDFGASAWPQFIQGFAVACFFMPLTTITLSGLPP ERLAAASSLSNFTRTLAGSIGTSITTTMWTNRESMHHAQLTESVNPFNPNAQAMYSQL EGLGMTQQQASGWIAQQITNQGLIISANEIFWMSAGIFLVLLGLVWFAKPPFGAGGGG GGAH" gene complement(2814218..2814733) /gene="luxS" /locus_tag="b2687" /gene_synonym="ECK2681; JW2662; ygaG" /db_xref="EcoGene:EG12712" /db_xref="GeneID:947168" CDS complement(2814218..2814733) /gene="luxS" /locus_tag="b2687" /gene_synonym="ECK2681; JW2662; ygaG" /codon_start=1 /transl_table=11 /product="S-ribosylhomocysteine lyase" /protein_id="NP_417172.1" /db_xref="GI:16130599" /db_xref="ASAP:ABE-0008842" /db_xref="UniProtKB/Swiss-Prot:P45578" /db_xref="EcoGene:EG12712" /db_xref="GeneID:947168" /translation="MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPN KEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVAD AWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA LPKEKLQELHI" gene 2814802..2814879 /gene="micA" /locus_tag="b4442" /gene_synonym="ECK2682; JWR0246; psrA10; sraD" /db_xref="EcoGene:EG31156" /db_xref="GeneID:2847697" ncRNA 2814802..2814879 /ncRNA_class="antisense_RNA" /gene="micA" /locus_tag="b4442" /gene_synonym="ECK2682; JWR0246; psrA10; sraD" /product="sRNA antisense regulator of ompA, lamB, ompX, and phoP; Hfq-dependent" /note="identified in a large scale screen" /db_xref="ASAP:ABE-0047262" /db_xref="EcoGene:EG31156" /db_xref="GeneID:2847697" gene complement(2814883..2816439) /gene="gshA" /locus_tag="b2688" /gene_synonym="ECK2683; gshI; JW2663" /db_xref="EcoGene:EG10418" /db_xref="GeneID:944881" CDS complement(2814883..2816439) /gene="gshA" /locus_tag="b2688" /gene_synonym="ECK2683; gshI; JW2663" /EC_number="6.3.2.2" /function="enzyme; Biosynthesis of cofactors, carriers: Thioredoxin, glutaredoxin, glutathione" /experiment="N-terminus verified by Edman degradation: PMID 2872655" /GO_process="GO:0006750 - glutathione biosynthetic process" /codon_start=1 /transl_table=11 /product="glutamate-cysteine ligase" /protein_id="NP_417173.1" /db_xref="GI:16130600" /db_xref="ASAP:ABE-0008845" /db_xref="UniProtKB/Swiss-Prot:P0A6W9" /db_xref="EcoGene:EG10418" /db_xref="GeneID:944881" /translation="MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGH PEALGSALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPL SMPCYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFW QAKCGDISGADAKEKISAGYFRVIRNYYRFGWVIPYLFGASPAICSSFLQGKPTSLPF EKTECGMYYLPYATSLRLSDLGYTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAK IGIEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDI NPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRVNWNRVILEGRKPGLTLG IGCETAQFPLPQVGKDLFRDLKRVAQTLDSINGGEAYQKVCDELVACFDNPDLTFSAR ILRSMIDTGIGGTGKAFAEAYRNLLREEPLEILREEDFVAEREASERRQQEMEAADTE PFAVWLEKHA" gene complement(2816512..2816940) /gene="yqaA" /locus_tag="b2689" /gene_synonym="ECK2684; JW2664" /db_xref="EcoGene:EG13529" /db_xref="GeneID:945419" CDS complement(2816512..2816940) /gene="yqaA" /locus_tag="b2689" /gene_synonym="ECK2684; JW2664" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="COG1238 family inner membrane protein" /protein_id="NP_417174.1" /db_xref="GI:16130601" /db_xref="ASAP:ABE-0008847" /db_xref="UniProtKB/Swiss-Prot:P0ADR0" /db_xref="EcoGene:EG13529" /db_xref="GeneID:945419" /translation="MSEALSLFSLFASSFLSATLLPGNSEVVLVAMLLSGISHPWVLV LTATMGNSLGGLTNVILGRFFPLRKTSRWQEKATGWLKRYGAVTLLLSWMPVVGDLLC LLAGWMRISWGPVIFFLCLGKALRYVAVAAATVQGMMWWH" gene complement(2816937..2817503) /gene="yqaB" /locus_tag="b2690" /gene_synonym="ECK2685; JW2665" /db_xref="EcoGene:EG13530" /db_xref="GeneID:945776" CDS complement(2816937..2817503) /gene="yqaB" /locus_tag="b2690" /gene_synonym="ECK2685; JW2665" /function="putative enzyme; Not classified" /note="putative phosphatase" /codon_start=1 /transl_table=11 /product="fructose-1-P and 6-phosphogluconate phosphatase" /protein_id="NP_417175.1" /db_xref="GI:16130602" /db_xref="ASAP:ABE-0008850" /db_xref="UniProtKB/Swiss-Prot:P77475" /db_xref="EcoGene:EG13530" /db_xref="GeneID:945776" /translation="MYERYAGLIFDMDGTILDTEPTHRKAWREVLGHYGLQYDIQAMI ALNGSPTWRIAQAIIELNQADLDPHALAREKTEAVRSMLLDSVEPLPLVDVVKSWHGR RPMAVGTGSESAIAEALLAHLGLRHYFDAVVAADHVKHHKPAPDTFLLCAQRMGVQPT QCVVFEDADFGIQAARAAGMDAVDVRLL" gene complement(2817784..2817860) /gene="argQ" /locus_tag="b2691" /gene_synonym="argVdelta; ECK2686; JWR0057" /db_xref="EcoGene:EG30013" /db_xref="GeneID:947150" tRNA complement(2817784..2817860) /gene="argQ" /locus_tag="b2691" /gene_synonym="argVdelta; ECK2686; JWR0057" /product="tRNA-Arg" /note="anticodon: ACG" /db_xref="ASAP:ABE-0008856" /db_xref="EcoGene:EG30013" /db_xref="GeneID:947150" gene complement(2818059..2818135) /gene="argZ" /locus_tag="b2692" /gene_synonym="argVgamma; ECK2687; JWR0058" /db_xref="EcoGene:EG30019" /db_xref="GeneID:947171" tRNA complement(2818059..2818135) /gene="argZ" /locus_tag="b2692" /gene_synonym="argVgamma; ECK2687; JWR0058" /product="tRNA-Arg" /note="anticodon: ACG" /db_xref="ASAP:ABE-0008858" /db_xref="EcoGene:EG30019" /db_xref="GeneID:947171" gene complement(2818198..2818274) /gene="argY" /locus_tag="b2693" /gene_synonym="argVbeta; ECK2688; JWR0059" /db_xref="EcoGene:EG30018" /db_xref="GeneID:946596" tRNA complement(2818198..2818274) /gene="argY" /locus_tag="b2693" /gene_synonym="argVbeta; ECK2688; JWR0059" /product="tRNA-Arg" /note="anticodon: ACG" /db_xref="ASAP:ABE-0008860" /db_xref="EcoGene:EG30018" /db_xref="GeneID:946596" gene complement(2818473..2818549) /gene="argV" /locus_tag="b2694" /gene_synonym="argValpha; ECK2689; JWR0060" /db_xref="EcoGene:EG30015" /db_xref="GeneID:947209" tRNA complement(2818473..2818549) /gene="argV" /locus_tag="b2694" /gene_synonym="argValpha; ECK2689; JWR0060" /product="tRNA-Arg" /note="anticodon: ACG" /db_xref="ASAP:ABE-0008862" /db_xref="EcoGene:EG30015" /db_xref="GeneID:947209" gene complement(2818553..2818645) /gene="serV" /locus_tag="b2695" /gene_synonym="ECK2690; JWR0061; supD" /db_xref="EcoGene:EG30095" /db_xref="GeneID:947173" tRNA complement(2818553..2818645) /gene="serV" /locus_tag="b2695" /gene_synonym="ECK2690; JWR0061; supD" /product="tRNA-Ser" /note="anticodon: GCU" /db_xref="ASAP:ABE-0008864" /db_xref="EcoGene:EG30095" /db_xref="GeneID:947173" gene complement(2818961..2819146) /gene="csrA" /locus_tag="b2696" /gene_synonym="ECK2691; JW2666; zfiA" /db_xref="EcoGene:EG11447" /db_xref="GeneID:947176" CDS complement(2818961..2819146) /gene="csrA" /locus_tag="b2696" /gene_synonym="ECK2691; JW2666; zfiA" /function="regulator; Global regulatory functions" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006094 - gluconeogenesis; GO:0006096 - glycolysis; GO:0006401 - RNA catabolic process; GO:0042330 - taxis; GO:0009386 - translational attenuation" /note="carbon storage regulator; controls glycogen synthesis, gluconeogenesis, cell size and surface properties" /codon_start=1 /transl_table=11 /product="pleiotropic regulatory protein for carbon source metabolism" /protein_id="NP_417176.1" /db_xref="GI:16130603" /db_xref="ASAP:ABE-0008866" /db_xref="UniProtKB/Swiss-Prot:P69913" /db_xref="EcoGene:EG11447" /db_xref="GeneID:947176" /translation="MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHR EEIYQRIQAEKSQQSSY" gene complement(2819381..2822011) /gene="alaS" /locus_tag="b2697" /gene_synonym="act; ala-act; ECK2692; JW2667; lovB" /db_xref="EcoGene:EG10034" /db_xref="GeneID:947175" CDS complement(2819381..2822011) /gene="alaS" /locus_tag="b2697" /gene_synonym="act; ala-act; ECK2692; JW2667; lovB" /EC_number="6.1.1.7" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /codon_start=1 /transl_table=11 /product="alanyl-tRNA synthetase" /protein_id="NP_417177.1" /db_xref="GI:16130604" /db_xref="ASAP:ABE-0008869" /db_xref="UniProtKB/Swiss-Prot:P00957" /db_xref="EcoGene:EG10034" /db_xref="GeneID:947175" /translation="MSKSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGM NQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDY FKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDN KGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQ FNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDL SNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKL VGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDG ETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREASGFGADYNAMI RVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGD KGELKGANFSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSA THLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNTQIRRNL PIETNIMDLEAAKAKGAMALFGEKYDERVRVLSMGDFSTELCGGTHASRTGDIGLFRI ISESGTAAGVRRIEAVTGEGAIATVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTR QLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLG STIIVLATVVEGKVSLIAGVSKDVTDRVKAGELIGMVAQQVGGKGGGRPDMAQAGGTD AAALPAALASVKGWVSAKLQ" gene complement(2822139..2822639) /gene="recX" /locus_tag="b2698" /gene_synonym="ECK2693; JW2668; oraA" /db_xref="EcoGene:EG12080" /db_xref="GeneID:947172" CDS complement(2822139..2822639) /gene="recX" /locus_tag="b2698" /gene_synonym="ECK2693; JW2668; oraA" /function="putative regulator; Not classified" /note="regulator, OraA protein" /codon_start=1 /transl_table=11 /product="regulatory protein for RecA" /protein_id="NP_417178.1" /db_xref="GI:16130605" /db_xref="ASAP:ABE-0008872" /db_xref="UniProtKB/Swiss-Prot:P33596" /db_xref="EcoGene:EG12080" /db_xref="GeneID:947172" /translation="MTESTSRRPAYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKN GPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGIS REATEKAMRECDIDWCALARDQATRKYGEPLPTVFSEKVKIQRFLLYRGYLMEDIQEI WRNFAD" gene complement(2822708..2823769) /gene="recA" /locus_tag="b2699" /gene_synonym="ECK2694; JW2669; lexB; recH; rnmB; srf; tif; umuB; umuR; zab" /db_xref="EcoGene:EG10823" /db_xref="GeneID:947170" CDS complement(2822708..2823769) /gene="recA" /locus_tag="b2699" /gene_synonym="ECK2694; JW2669; lexB; recH; rnmB; srf; tif; umuB; umuR; zab" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0008233 - peptidase activity" /GO_process="GO:0006310 - DNA recombination; GO:0006281 - DNA repair; GO:0006508 - proteolysis; GO:0009432 - SOS response" /note="DNA strand exchange and renaturation, DNA-dependent ATPase, DNA- and ATP-dependent coprotease" /codon_start=1 /transl_table=11 /product="DNA recombination and repair protein; ssDNA-dependent ATPase; synaptase; ssDNA and dsDNA binding protein; ATP-dependent homologous DNA strand exchanger; recombinase A; LexA autocleavage cofactor" /protein_id="NP_417179.1" /db_xref="GI:16130606" /db_xref="ASAP:ABE-0008876" /db_xref="UniProtKB/Swiss-Prot:P0A7G6" /db_xref="EcoGene:EG10823" /db_xref="GeneID:947170" /translation="MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTG SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF YASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELV DLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNS TPDFSVDDSEGVAETNEDF" gene complement(2823849..2824346) /gene="pncC" /locus_tag="b2700" /gene_synonym="ECK2695; JW2670; ygaD" /db_xref="EcoGene:EG12698" /db_xref="GeneID:947169" CDS complement(2823849..2824346) /gene="pncC" /locus_tag="b2700" /gene_synonym="ECK2695; JW2670; ygaD" /EC_number="3.5.1.42" /function="enzyme; NMN catabolism" /codon_start=1 /transl_table=11 /product="nicotinamide-nucleotide amidohydrolase; NMN amidohydrolase" /protein_id="NP_417180.1" /db_xref="GI:16130607" /db_xref="ASAP:ABE-0008882" /db_xref="UniProtKB/Swiss-Prot:P0A6G3" /db_xref="EcoGene:EG12698" /db_xref="GeneID:947169" /translation="MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAG SSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSI SGIAGPDGGSEEKPVGTVWFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQ FLQNT" gene complement(2824491..2825576) /gene="mltB" /locus_tag="b2701" /gene_synonym="ECK2696; JW2671" /db_xref="EcoGene:EG12699" /db_xref="GeneID:947184" CDS complement(2824491..2825576) /gene="mltB" /locus_tag="b2701" /gene_synonym="ECK2696; JW2671" /EC_number="3.2.1.-" /function="enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /codon_start=1 /transl_table=11 /product="membrane-bound lytic murein transglycosylase B" /protein_id="NP_417181.1" /db_xref="GI:16130608" /db_xref="ASAP:ABE-0008885" /db_xref="UniProtKB/Swiss-Prot:P41052" /db_xref="EcoGene:EG12699" /db_xref="GeneID:947184" /translation="MFKRRYVTLLPLFVLLAACSSKPKPTETDTTTGTPSGGFLLEPQ HNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTT SVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIG VETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFA GAMGYGQFMPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAVMAN GQAPGLPNGFKTKYSISQLAAAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYT ITRYNHSTHYAMAVWQLGQAVALARVQ" gene 2825832..2826395 /gene="srlA" /locus_tag="b2702" /gene_synonym="ECK2697; gutA; JW5429; sbl" /db_xref="EcoGene:EG10969" /db_xref="GeneID:947575" CDS 2825832..2826395 /gene="srlA" /locus_tag="b2702" /gene_synonym="ECK2697; gutA; JW5429; sbl" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="PTS system, glucitol/sorbitol-specific IIC component, one of two" /codon_start=1 /transl_table=11 /product="glucitol/sorbitol-specific enzyme IIC component of PTS" /protein_id="YP_026180.1" /db_xref="GI:49176260" /db_xref="ASAP:ABE-0008890" /db_xref="UniProtKB/Swiss-Prot:P56579" /db_xref="EcoGene:EG10969" /db_xref="GeneID:947575" /translation="MIETITHGAEWFIGLFQKGGEVFTGMVTGILPLLISLLVIMNAL INFIGQHRIERFAQRCAGNPVSRYLLLPCIGTFVFCNPMTLSLGRFMPEKYKPSYYAA ASYSCHSMNGLFPHINPGELFVYLGIASGLTTLNLPLGPLAVSYLLVGLVTNFFRGWV TDLTTAIFEKKMGIQLEQKVHLAGATS" gene 2826392..2827351 /gene="srlE" /locus_tag="b2703" /gene_synonym="ECK2698; gutA; gutE; JW5430; sbl; srlA" /db_xref="EcoGene:EG14373" /db_xref="GeneID:948933" CDS 2826392..2827351 /gene="srlE" /locus_tag="b2703" /gene_synonym="ECK2698; gutA; gutE; JW5430; sbl; srlA" /EC_number="2.7.1.69" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components" /codon_start=1 /transl_table=11 /product="glucitol/sorbitol-specific enzyme IIB component of PTS" /protein_id="YP_026181.1" /db_xref="GI:49176261" /db_xref="ASAP:ABE-0008892" /db_xref="UniProtKB/Swiss-Prot:P56580" /db_xref="EcoGene:EG14373" /db_xref="GeneID:948933" /translation="MTHIRIEKGTGGWGGPLELKATPGKKIVYITAGTRPAIVDKLAQ LTGWQAIDGFKEGEPAEAEIGVAVIDCGGTLRCGIYPKRRIPTINIHSTGKSGPLAQY IVEDIYVSGVKEENITVVGDATPQPSSVGRDYDTSKKITEQSDGLLAKVGMGMGSTVA VLFQSGRDTIDTVLKTILPFMAFVSALIGIIMASGLGDWIAHGLAPLASHPLGLVMLA LICSFPLLSPFLGPGAVIAQVIGVLIGVQIGLGNIPPHLALPALFAINAQAACDFIPV GLSLAEARQDTVRVGVPSVLVSRFLTGAPTVLIAWFVSGFIYQ" gene 2827362..2827733 /gene="srlB" /locus_tag="b2704" /gene_synonym="ECK2699; gutB; JW2673" /db_xref="EcoGene:EG10970" /db_xref="GeneID:948971" CDS 2827362..2827733 /gene="srlB" /locus_tag="b2704" /gene_synonym="ECK2699; gutB; JW2673" /EC_number="2.7.1.69" /function="enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="PTS system, glucitol/sorbitol-specific enzyme IIA component" /codon_start=1 /transl_table=11 /product="glucitol/sorbitol-specific enzyme IIA component of PTS" /protein_id="NP_417184.1" /db_xref="GI:16130611" /db_xref="ASAP:ABE-0008894" /db_xref="UniProtKB/Swiss-Prot:P05706" /db_xref="EcoGene:EG10970" /db_xref="GeneID:948971" /translation="MTVIYQTTITRIGASAIDALSDQMLITFREGAPADLEEYCFIHC HGELKGALHPGLQFSLGQHRYPVTAVGSVAEDNLRELGHVTLRFDGLNEAEFPGTVHV AGPVPDDIAPGSVLKFESVKE" gene 2827737..2828516 /gene="srlD" /locus_tag="b2705" /gene_synonym="ECK2700; gutD; JW2674" /db_xref="EcoGene:EG10971" /db_xref="GeneID:948937" CDS 2827737..2828516 /gene="srlD" /locus_tag="b2705" /gene_synonym="ECK2700; gutD; JW2674" /EC_number="1.1.1.140" /function="enzyme; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 6384188" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="glucitol (sorbitol)-6-phosphate dehydrogenase" /codon_start=1 /transl_table=11 /product="sorbitol-6-phosphate dehydrogenase" /protein_id="NP_417185.1" /db_xref="GI:16130612" /db_xref="ASAP:ABE-0008896" /db_xref="UniProtKB/Swiss-Prot:P05707" /db_xref="EcoGene:EG10971" /db_xref="GeneID:948937" /translation="MNQVAVVIGGGQTLGAFLCHGLAAEGYRVAVVDIQSDKAANVAQ EINAEYGESMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYSAGIAKAAFISDFQL GDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFG GVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYATKLGIKPDQVEQYYIDK VPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQVMF" repeat_region 2828561..2828589 /note="REP194 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 2828621..2828980 /gene="srlM" /locus_tag="b2706" /gene_synonym="ECK2701; gutM; JW2675" /db_xref="EcoGene:EG10972" /db_xref="GeneID:948938" CDS 2828621..2828980 /gene="srlM" /locus_tag="b2706" /gene_synonym="ECK2701; gutM; JW2675" /function="regulator; Degradation of small molecules: Carbon compounds" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="glucitol operon activator" /codon_start=1 /transl_table=11 /product="sorbitol=responsive srl operon transcriptional activator" /protein_id="NP_417186.1" /db_xref="GI:16130613" /db_xref="ASAP:ABE-0008898" /db_xref="UniProtKB/Swiss-Prot:P15081" /db_xref="EcoGene:EG10972" /db_xref="GeneID:948938" /translation="MVSALITVAVIAWCAQLALGGWQISRFNRAFDTLCQQGRVGVGR SSGRFKPRVVVAIALDDQQRIVDTLFMKGLTVFARPQKIPAITGMHAGDLQPDVIFPH DPLSQNALSLALKLKRG" gene 2829047..2829820 /gene="srlR" /locus_tag="b2707" /gene_synonym="ECK2702; gutR; JW2676" /db_xref="EcoGene:EG10974" /db_xref="GeneID:948942" CDS 2829047..2829820 /gene="srlR" /locus_tag="b2707" /gene_synonym="ECK2702; gutR; JW2676" /function="regulator; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006355 - regulation of transcription, DNA-dependent; GO:0006350 - transcription" /note="regulator for gut (srl), glucitol operon" /codon_start=1 /transl_table=11 /product="sorbitol-inducible srl operon transcriptional repressor" /protein_id="NP_417187.1" /db_xref="GI:16130614" /db_xref="ASAP:ABE-0008900" /db_xref="UniProtKB/Swiss-Prot:P15082" /db_xref="EcoGene:EG10974" /db_xref="GeneID:948942" /translation="MKPRQRQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILE HAGTVIRTYGGVVLNKEESDPPIDHKTLINTHKKELIAEAAVSFIHDGDSIILDAGST VLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENA FEHFTFDKLFMGTDGIDLNAGVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNV VCSLESVDKLITDAGIDPAFRQALEEKGIDVIITGESNE" gene 2829813..2830778 /gene="srlQ" /locus_tag="b2708" /gene_synonym="ECK2703; gutQ; JW5431" /db_xref="EcoGene:EG10973" /db_xref="GeneID:947587" CDS 2829813..2830778 /gene="srlQ" /locus_tag="b2708" /gene_synonym="ECK2703; gutQ; JW5431" /codon_start=1 /transl_table=11 /product="D-arabinose 5-phosphate isomerase" /protein_id="NP_417188.4" /db_xref="GI:90111480" /db_xref="ASAP:ABE-0008902" /db_xref="UniProtKB/Swiss-Prot:P17115" /db_xref="EcoGene:EG10973" /db_xref="GeneID:947587" /translation="MSEALLNAGRQTLMLELQEASRLPERLGDDFVRAANIILHCEGK VVVSGIGKSGHIGKKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGA KELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNT LMMGDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASV MDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTVGGTTL QSQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQAGII" gene complement(2830775..2832289) /gene="norR" /locus_tag="b2709" /gene_synonym="ECK2704; JW5843; ygaA" /db_xref="EcoGene:EG12108" /db_xref="GeneID:947186" CDS complement(2830775..2832289) /gene="norR" /locus_tag="b2709" /gene_synonym="ECK2704; JW5843; ygaA" /function="regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="putative 2-component transcriptional regulator" /codon_start=1 /transl_table=11 /product="anaerobic nitric oxide reductase DNA-binding transcriptional activator" /protein_id="NP_417189.2" /db_xref="GI:90111481" /db_xref="ASAP:ABE-0008904" /db_xref="UniProtKB/Swiss-Prot:P37013" /db_xref="EcoGene:EG12108" /db_xref="GeneID:947186" /translation="MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALL RYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA LLIEQLESQNMLPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRCLRVDVRVLAATNRDLREE VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRQGLSRVVLSAGAR NLLQHYSFPGNVRELEHAIHRAVVLARATRSGDEVILEAQHFAFPEVTLPTPEVAAVP VVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGLKD" gene 2832476..2833915 /gene="norV" /locus_tag="b2710" /gene_synonym="ECK2705; flrd; JW2680; ygaI; ygaJ; ygaK" /db_xref="EcoGene:EG12963" /db_xref="GeneID:948979" CDS 2832476..2833915 /gene="norV" /locus_tag="b2710" /gene_synonym="ECK2705; flrd; JW2680; ygaI; ygaJ; ygaK" /function="putative enzyme; Not classified" /GO_function="GO:0009055 - electron carrier activity" /note="putative flavodoxin" /codon_start=1 /transl_table=11 /product="anaerobic nitric oxide reductase flavorubredoxin" /protein_id="NP_417190.1" /db_xref="GI:16130617" /db_xref="ASAP:ABE-0008910" /db_xref="UniProtKB/Swiss-Prot:Q46877" /db_xref="EcoGene:EG12963" /db_xref="GeneID:948979" /translation="MSIVVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEK NVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYC TANAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTGDA VLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNL PVDMIATSHGVVWRDNPTQIVELYLKWAADYQEDRITIFYDTMSNNTRMMADAIAQGI AETDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGLR FRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDQDALKLCREHGREI ARQWALAPLPQSTVNTVVKEETSATTTADLGPRMQCSVCQWIYDPAKGEPMQDVAPGT PWSEVPDNFLCPECSLGKDVFEELASEAK" gene 2833912..2835045 /gene="norW" /locus_tag="b2711" /gene_synonym="ECK2706; JW2681; ygaL; ygbD" /db_xref="EcoGene:EG12450" /db_xref="GeneID:947088" CDS 2833912..2835045 /gene="norW" /locus_tag="b2711" /gene_synonym="ECK2706; JW2681; ygaL; ygbD" /EC_number="1.18.1.-" /function="putative enzyme; Not classified" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="NADH:flavorubredoxin oxidoreductase" /protein_id="NP_417191.1" /db_xref="GI:16130618" /db_xref="ASAP:ABE-0008912" /db_xref="UniProtKB/Swiss-Prot:P37596" /db_xref="EcoGene:EG12450" /db_xref="GeneID:947088" /translation="MSNGIVIIGSGFAARQLVKNIRKQDATIPLTLIAADSMDEYNKP DLSHVISQGQRADDLTRQTAGEFAEQFNLHLFPQTWVTDIDAEARVVKSQNNQWQYDK LVLATGASAFVPPVPGRELMLTLNSQQEYRACETQLRDARRVLIVGGGLIGSELAMDF CRAGKAVTLIDNAASILASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIQA TLDRQRNIEVDAVIAATGLRPETALARRAGLTINRGVCVDSYLQTSNTDIYALGDCAE INGQVLPFLQPIQLSAMVLAKNLLGNNTPLKLPAMLVKIKTPELPLHLAGETQRQDLR WQINTERQGMVARGVDDADQLRAFVVSEDRMKEAFGLLKTLPM" repeat_region 2835067..2835148 /note="REP195 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(2835173..2837425) /gene="hypF" /locus_tag="b2712" /gene_synonym="ECK2707; hydA; JW5433" /db_xref="EcoGene:EG11551" /db_xref="GeneID:944963" CDS complement(2835173..2837425) /gene="hypF" /locus_tag="b2712" /gene_synonym="ECK2707; hydA; JW5433" /function="regulator; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009061 - anaerobic respiration; GO:0006457 - protein folding" /note="transcriptional regulatory protein" /codon_start=1 /transl_table=11 /product="carbamoyl phosphate phosphatase and [NiFe] hydrogenase maturation protein" /protein_id="NP_417192.1" /db_xref="GI:16130619" /db_xref="ASAP:ABE-0008915" /db_xref="UniProtKB/Swiss-Prot:P30131" /db_xref="EcoGene:EG11551" /db_xref="GeneID:944963" /translation="MAKNTSCGVQLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGD GVEVRLREDPETFLVQLYQHCPPLARIDSVEREPFIWSQLPTEFTIRQSTGGTMNTQI VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCP ACDKEYRDPLDRRFHAQPVACPECGPHLEWVSHGEHAEQEAALQAAIAQLKMGKIVAI KGIGGFHLACDARNSNAVATLRARKHRPAKPLAVMLPVADGLPDAARQLLTTPAAPIV LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISN EQALADLQGIADGFLIHNRDIVQRMDDSVVRESGEMLRRSRGYVPDALALPPGFKNVP PVLCLGADLKNTFCLVRGEQAVLSQHLGDLSDDGIQMQWREALRLMQNIYDFTPQYVV HDAHPGYVSSQWAREMNLPTQTVLHHHAHAAACLAEHQWPLDGGDVIALTLDGIGMGE NGALWGGECLRVNYRECEHLGGLPAVALPGGDLAAKQPWRNLLAQCLRFVPEWQNYSE TASVQQQNWSVLARAIERGINAPLASSCGRFFDAVAAALGCAPATLSYEGEAACALEA LAASCHGVTHPVTMPRVDNQLDLATFWQQWLNWQAPVNQRAWAFHDALAQGFAALMRE QATMRGITTLVFSGGVIHNRLLRARLAHYLADFTLLFPQSLPAGDGGLSLGQGVIAAA RWLAGEVQNG" repeat_region 2837465..2837491 /note="REP196 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2837578..2838105) /gene="hydN" /locus_tag="b2713" /gene_synonym="ECK2708; JW2683" /db_xref="EcoGene:EG11552" /db_xref="GeneID:947190" CDS complement(2837578..2838105) /gene="hydN" /locus_tag="b2713" /gene_synonym="ECK2708; JW2683" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_process="GO:0009061 - anaerobic respiration" /note="involved in electron transport from formate to hydrogen, Fe-S centers" /codon_start=1 /transl_table=11 /product="formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit" /protein_id="NP_417193.1" /db_xref="GI:16130620" /db_xref="ASAP:ABE-0008919" /db_xref="UniProtKB/Swiss-Prot:P0AAK4" /db_xref="EcoGene:EG11552" /db_xref="GeneID:947190" /translation="MNRFIIADASKCIGCRTCEVACVVSHQENQDCASLTPETFLPRI HVIKGVNISTATVCRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYG AMEVVVRPVIRNSGAGLNVRADKAEANKCDLCNHREDGPACMAACPTHALICVDRNKL EQLSAEKRRRTALMF" gene complement(2838254..2839264) /gene="ascG" /locus_tag="b2714" /gene_synonym="ECK2709; JW5434; sac" /db_xref="EcoGene:EG10087" /db_xref="GeneID:947305" CDS complement(2838254..2839264) /gene="ascG" /locus_tag="b2714" /gene_synonym="ECK2709; JW5434; sac" /function="regulator; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006350 - transcription" /note="ascBF operon repressor" /codon_start=1 /transl_table=11 /product="asc operon transcriptional repressor; prpBC operon repressor" /protein_id="NP_417194.2" /db_xref="GI:345452722" /db_xref="ASAP:ABE-0008922" /db_xref="UniProtKB/Swiss-Prot:P24242" /db_xref="EcoGene:EG10087" /db_xref="GeneID:947305" /translation="MTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESG YRPNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHS AEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVW CDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIA NGKWTPASGAEGVEMLLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFD DIAIAPYTVPALSSVKIPVTEMIQEIIGRLIFMLDGGDFSPPKTFSGKLIRRDSLIAP SR" gene 2839524..2840981 /gene="ascF" /locus_tag="b2715" /gene_synonym="ECK2710; JW5435; sac" /db_xref="EcoGene:EG10086" /db_xref="GeneID:947154" CDS 2839524..2840981 /gene="ascF" /locus_tag="b2715" /gene_synonym="ECK2710; JW5435; sac" /EC_number="2.7.1.69" /function="enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="PTS system enzyme II ABC (asc), cryptic, transports specific beta-glucosides" /codon_start=1 /transl_table=11 /product="cellobiose/arbutin/salicin-specific PTS enzymes, IIB and IC components" /protein_id="YP_026182.1" /db_xref="GI:49176263" /db_xref="ASAP:ABE-0008926" /db_xref="UniProtKB/Swiss-Prot:P24241" /db_xref="EcoGene:EG10086" /db_xref="GeneID:947154" /translation="MAKNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDALIDS PTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLPGDMQPAQPVGKPKLTLRRI GAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFF LPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFALIPVTAVKYT YTVIPALVMTWCLSYIERWVDSITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGS AISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAETGKEGMVMPSE IGANLSLGGSSLAVAWKTKNPELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIAS LISGFICGAVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFIL TLLLGFEDIPVEEAAAQARKYQSVQPTVAKEVSLN" gene 2840990..2842414 /gene="ascB" /locus_tag="b2716" /gene_synonym="ECK2711; JW2686; sac" /db_xref="EcoGene:EG10085" /db_xref="GeneID:947460" CDS 2840990..2842414 /gene="ascB" /locus_tag="b2716" /gene_synonym="ECK2711; JW2686; sac" /EC_number="3.2.1.86" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="6-phospho-beta-glucosidase; cryptic" /codon_start=1 /transl_table=11 /product="cryptic 6-phospho-beta-glucosidase" /protein_id="NP_417196.1" /db_xref="GI:16130623" /db_xref="ASAP:ABE-0008928" /db_xref="UniProtKB/Swiss-Prot:P24240" /db_xref="EcoGene:EG10085" /db_xref="GeneID:947460" /translation="MSVFPESFLWGGALAANQSEGAFREGDKGLTTVDMIPHGEHRMA VKLGLEKRFQLRDDEFYPSHEATDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGD EITPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKLVEFFSRY ARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHQLVASA LATKIAHEVNPQNQVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGTYPA YSARVFREKGVTINKAPGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSL RNPYLQVSDWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGAKDEFAANGEINDDYR ISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVFVDRDDAGNGT LTRTRKKSFWWYKKVIASNGEDLE" repeat_region 2842423..2842501 /note="REP197 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(2842573..2843043) /gene="hycI" /locus_tag="b2717" /gene_synonym="ECK2712; JW2687" /db_xref="EcoGene:EG13396" /db_xref="GeneID:947428" CDS complement(2842573..2843043) /gene="hycI" /locus_tag="b2717" /gene_synonym="ECK2712; JW2687" /EC_number="3.4.-.-" /function="enzyme; Degradation of proteins, peptides, glyco" /GO_process="GO:0006457 - protein folding" /note="protease involved in processing C-terminal end of the large subunit of hydrogenase 3" /codon_start=1 /transl_table=11 /product="protease involved in processing C-terminal end of HycE" /protein_id="NP_417197.1" /db_xref="GI:16130624" /db_xref="ASAP:ABE-0008931" /db_xref="UniProtKB/Swiss-Prot:P0AEV9" /db_xref="EcoGene:EG13396" /db_xref="GeneID:947428" /translation="MTDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPE NDIVAIRELRPTRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLK EDIGEVIFLGIQPDIVGFYYPMTQPIKDAVETVYQRLEGWEGNGGFAQLAVEEE" gene complement(2843036..2843446) /gene="hycH" /locus_tag="b2718" /gene_synonym="ECK2713; hevH; JW2688" /db_xref="EcoGene:EG10481" /db_xref="GeneID:947438" CDS complement(2843036..2843446) /gene="hycH" /locus_tag="b2718" /gene_synonym="ECK2713; hevH; JW2688" /function="factor; Energy metabolism, carbon: Fermentation" /GO_process="GO:0006113 - fermentation" /note="processing of large subunit (HycE) of hydrogenase 3 (part of the FHL complex)" /codon_start=1 /transl_table=11 /product="hydrogenase 3 maturation protein" /protein_id="NP_417198.1" /db_xref="GI:16130625" /db_xref="ASAP:ABE-0008933" /db_xref="UniProtKB/Swiss-Prot:P0AEV7" /db_xref="EcoGene:EG10481" /db_xref="GeneID:947438" /translation="MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDC LEAALTCPWDEYLAWIATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAA QTSQQQEWSTMLLSMLHDIHQENAIYLMVRRLRD" gene complement(2843443..2844210) /gene="hycG" /locus_tag="b2719" /gene_synonym="ECK2714; hevG; JW2689" /db_xref="EcoGene:EG10480" /db_xref="GeneID:947191" CDS complement(2843443..2844210) /gene="hycG" /locus_tag="b2719" /gene_synonym="ECK2714; hevG; JW2689" /EC_number="1.12.7.2" /function="phenotype; Energy metabolism, carbon: Fermentation" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration; GO:0006113 - fermentation" /note="hydrogenase activity" /codon_start=1 /transl_table=11 /product="hydrogenase 3 and formate hydrogenase complex, HycG subunit" /protein_id="NP_417199.1" /db_xref="GI:16130626" /db_xref="ASAP:ABE-0008936" /db_xref="UniProtKB/Swiss-Prot:P16433" /db_xref="EcoGene:EG10480" /db_xref="GeneID:947191" /translation="MSNLLGPRDANGIPVPMTVDESIASMKASLLKKIKRSAYVYRVD CGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQS APDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL GLLEQKIHARGPGELDEQPAEILHGDMVQPLRVKVDREARRLAGYRYGRQIADDYLTQ LGQGEEQVARWLEAENDPRLNEIVSHLNHVVEEARIR" gene complement(2844210..2844752) /gene="hycF" /locus_tag="b2720" /gene_synonym="ECK2715; hevF; JW2690" /db_xref="EcoGene:EG10479" /db_xref="GeneID:947048" CDS complement(2844210..2844752) /gene="hycF" /locus_tag="b2720" /gene_synonym="ECK2715; hevF; JW2690" /EC_number="1.12.7.2" /function="putative enzyme; Energy metabolism, carbon: Fermentation" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration; GO:0006113 - fermentation" /note="probable iron-sulfur protein of hydrogenase 3 (part of FHL complex)" /codon_start=1 /transl_table=11 /product="formate hydrogenlyase complex iron-sulfur protein" /protein_id="NP_417200.1" /db_xref="GI:16130627" /db_xref="ASAP:ABE-0008942" /db_xref="UniProtKB/Swiss-Prot:P16432" /db_xref="EcoGene:EG10479" /db_xref="GeneID:947048" /translation="MFTFIKKVIKTGTATSSYPLEPIAVDKNFRGKPEQNPQQCIGCA ACVNACPSNALTVETDLATGELAWEFNLGHCIFCGRCEEVCPTAAIKLSQEYELAVWK KEDFLQQSRFALCNCRVCNRPFAVQKEIDYAIALLKHNGDSRAENHRESFETCPECKR QKCLVPSDRIELTRHMKEAI" gene complement(2844762..2846471) /gene="hycE" /locus_tag="b2721" /gene_synonym="ECK2716; hevE; JW2691" /db_xref="EcoGene:EG10478" /db_xref="GeneID:947396" CDS complement(2844762..2846471) /gene="hycE" /locus_tag="b2721" /gene_synonym="ECK2716; hevE; JW2691" /EC_number="1.12.7.2" /function="enzyme; Energy metabolism, carbon: Fermentation" /experiment="N-terminus verified by Edman degradation: PMID 8125094" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration; GO:0006113 - fermentation" /note="large subunit of hydrogenase 3 (part of FHL complex)" /codon_start=1 /transl_table=11 /product="hydrogenase 3, large subunit" /protein_id="NP_417201.1" /db_xref="GI:16130628" /db_xref="ASAP:ABE-0008944" /db_xref="UniProtKB/Swiss-Prot:P16431" /db_xref="EcoGene:EG10478" /db_xref="GeneID:947396" /translation="MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTVTVKVNYLPE VVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWITVRVEVDANKPEYP SVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPA PTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHR GMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILL EVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR RDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGP MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLD NLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT LRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNS PLK" gene complement(2846489..2847412) /gene="hycD" /locus_tag="b2722" /gene_synonym="ECK2717; hevD; JW2692" /db_xref="EcoGene:EG10477" /db_xref="GeneID:948994" CDS complement(2846489..2847412) /gene="hycD" /locus_tag="b2722" /gene_synonym="ECK2717; hevD; JW2692" /function="enzyme; Energy metabolism, carbon: Fermentation" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006113 - fermentation" /note="membrane-spanning protein of hydrogenase 3 (part of FHL complex)" /codon_start=1 /transl_table=11 /product="hydrogenase 3, membrane subunit" /protein_id="NP_417202.1" /db_xref="GI:16130629" /db_xref="ASAP:ABE-0008946" /db_xref="UniProtKB/Swiss-Prot:P16430" /db_xref="EcoGene:EG10477" /db_xref="GeneID:948994" /translation="MSVLYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYR DIIKLLGRQSVGPDASGWVFRLTPYVMVGVMLTIATALPVVTVGSPLPQLGDLITLLY LFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNI TDTVYHWPLSQSIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFG VMKWGISLKQLVVLQMFVGVFIPWGQMETFTAGGLLLALVIAIVKLVVGVLVIALFEN SMARLRLDITPRITWAGFGFAFLAFVSLLAA" gene complement(2847415..2849241) /gene="hycC" /locus_tag="b2723" /gene_synonym="ECK2718; hevC; JW2693" /db_xref="EcoGene:EG10476" /db_xref="GeneID:945327" CDS complement(2847415..2849241) /gene="hycC" /locus_tag="b2723" /gene_synonym="ECK2718; hevC; JW2693" /function="enzyme; Energy metabolism, carbon: Fermentation" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006113 - fermentation" /note="membrane-spanning protein of hydrogenase 3 (part of FHL complex)" /codon_start=1 /transl_table=11 /product="hydrogenase 3, membrane subunit" /protein_id="NP_417203.1" /db_xref="GI:16130630" /db_xref="ASAP:ABE-0008948" /db_xref="UniProtKB/Swiss-Prot:P16429" /db_xref="EcoGene:EG10476" /db_xref="GeneID:945327" /translation="MSAISLINSGVAWFVAAAVLAFLFSFQKALSGWIAGIGGAVGSL YTAAAGFTVLTGAVGVSGALSLVSYDVQISPLNAIWLITLGLCGLFVSLYNIDWHRHA QVKCNGLQINMLMAAAVCAVIASNLGMFVVMAEIMALCAVFLTSNSKEGKLWFALGRL GTLLLAIACWLLWQRYGTLDLRLLDMRMQQLPLGSDIWLLGVIGFGLLAGIIPLHGWV PQAHANASAPAAALFSTVVMKIGLLGILTLSLLGGNAPLWWGIALLVLGMITAFVGGL YALVEHNIQRLLAYHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLLNHSL FKSVLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEW VIYQSFFKLSNSGAFVARLLGPLLAVGLAITGALAVMCMAKVYGVTFLGAPRTKEAEN ATCAPLLMSVSVVALAICCVIGGVAAPWLLPMLSAAVPLPLEPANTTVSQPMITLLLI ACPLLPFIIMAICKGDRLPSRSRGAAWVCGYDHEKSMVITAHGFAMPVKQAFAPVLKL RKWLNPVSLVPGWQCEGSALLFRRMALVELAVLVVIIVSRGA" gene complement(2849238..2849849) /gene="hycB" /locus_tag="b2724" /gene_synonym="ECK2719; hevB; JW2694" /db_xref="EcoGene:EG10475" /db_xref="GeneID:948002" CDS complement(2849238..2849849) /gene="hycB" /locus_tag="b2724" /gene_synonym="ECK2719; hevB; JW2694" /EC_number="1.12.7.2" /function="putative enzyme; Energy metabolism, carbon: Fermentation" /GO_process="GO:0009061 - anaerobic respiration; GO:0006113 - fermentation" /note="probable small subunit of hydrogenase-3, iron-sulfur protein (part of formate hydrogenlyase (FHL) complex)" /codon_start=1 /transl_table=11 /product="hydrogenase 3, Fe-S subunit" /protein_id="NP_417204.1" /db_xref="GI:16130631" /db_xref="ASAP:ABE-0008950" /db_xref="UniProtKB/Swiss-Prot:P0AAK1" /db_xref="EcoGene:EG10475" /db_xref="GeneID:948002" /translation="MNRFVIADSTLCIGCHTCEAACSETHRQHGLQSMPRLRVMLNEK ESAPQLCHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEFSGS RPLDIPANANTPKAPPAPPAPARVSTLLDWVPGIRAIAVKCDLCSFDEQGPACVRMCP TKALHLVDNTDIARVSKRKRELTFNTDFGDLTLFQQAQSGEAK" gene complement(2849974..2850435) /gene="hycA" /locus_tag="b2725" /gene_synonym="ECK2720; hevA; JW2695" /db_xref="EcoGene:EG10474" /db_xref="GeneID:947193" CDS complement(2849974..2850435) /gene="hycA" /locus_tag="b2725" /gene_synonym="ECK2720; hevA; JW2695" /function="regulator; Energy metabolism, carbon: Fermentation" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006113 - fermentation; GO:0006350 - transcription" /note="transcriptional repression of hyc and hyp operons" /codon_start=1 /transl_table=11 /product="regulator of the transcriptional regulator FhlA" /protein_id="NP_417205.1" /db_xref="GI:16130632" /db_xref="ASAP:ABE-0008952" /db_xref="UniProtKB/Swiss-Prot:P0AEV4" /db_xref="EcoGene:EG10474" /db_xref="GeneID:947193" /translation="MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHH AMSCAPDKELCFVLFEHFRIYVTLADGFNSHTIEYYVETKDGEDKQRIAQAQLSIDGM IDGKVNIRDREQVLEHYLEKIAGVYDSLYTAIENNVPVNLSQLVKGQSPAA" gene 2850647..2850997 /gene="hypA" /locus_tag="b2726" /gene_synonym="ECK2721; JW2696" /db_xref="EcoGene:EG10483" /db_xref="GeneID:947195" CDS 2850647..2850997 /gene="hypA" /locus_tag="b2726" /gene_synonym="ECK2721; JW2696" /function="phenotype; Energy metabolism, carbon: Anaerobic respiration" /GO_process="GO:0009061 - anaerobic respiration" /note="pleiotrophic effects on 3 hydrogenase isozymes" /codon_start=1 /transl_table=11 /product="protein involved in nickel insertion into hydrogenases 3" /protein_id="NP_417206.1" /db_xref="GI:16130633" /db_xref="ASAP:ABE-0008958" /db_xref="UniProtKB/Swiss-Prot:P0A700" /db_xref="EcoGene:EG10483" /db_xref="GeneID:947195" /translation="MHEITLCQRALELIEQQAAKHGAKRVTGVWLKIGAFSCVETSSL AFCFDLVCRGSVAEGCKLHLEEQEAECWCETCQQYVTLLTQRVRRCPQCHGDMLQIVA DDGLQIRRIEIDQE" gene 2851001..2851873 /gene="hypB" /locus_tag="b2727" /gene_synonym="ECK2722; hydB; hydE; JW2697" /db_xref="EcoGene:EG10484" /db_xref="GeneID:947194" CDS 2851001..2851873 /gene="hypB" /locus_tag="b2727" /gene_synonym="ECK2722; hydB; hydE; JW2697" /function="phenotype; Energy metabolism, carbon: Fermentation" /experiment="N-terminus verified by Edman degradation: PMID 8423137,9740056" /GO_process="GO:0006113 - fermentation; GO:0006457 - protein folding" /note="guanine-nucleotide binding protein, functions as nickel donor for large subunit of hydrogenase 3" /codon_start=1 /transl_table=11 /product="GTP hydrolase involved in nickel liganding into hydrogenases" /protein_id="NP_417207.1" /db_xref="GI:16130634" /db_xref="ASAP:ABE-0008960" /db_xref="UniProtKB/Swiss-Prot:P0AAN3" /db_xref="EcoGene:EG10484" /db_xref="GeneID:947194" /translation="MCTTCGCGEGNLYIEGDEHNPHSAFRSAPFAPAARPKMKITGIK APEFTPSQTEEGDLHYGHGEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFAAR KQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQV NTGKGCHLDAQMIADAAPRLPLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEG EDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEG MDQWLNWLETQRCA" gene 2851864..2852136 /gene="hypC" /locus_tag="b2728" /gene_synonym="ECK2723; JW2698" /db_xref="EcoGene:EG10485" /db_xref="GeneID:947192" CDS 2851864..2852136 /gene="hypC" /locus_tag="b2728" /gene_synonym="ECK2723; JW2698" /function="phenotype; Energy metabolism, carbon: Anaerobic respiration" /GO_process="GO:0009061 - anaerobic respiration; GO:0006464 - protein modification process" /note="pleiotrophic effects on 3 hydrogenase isozymes" /codon_start=1 /transl_table=11 /product="hydrogenase maturation protein" /protein_id="NP_417208.1" /db_xref="GI:16130635" /db_xref="ASAP:ABE-0008962" /db_xref="UniProtKB/Swiss-Prot:P0AAM3" /db_xref="EcoGene:EG10485" /db_xref="GeneID:947192" /translation="MCIGVPGQIRTIDGNQAKVDVCGIQRDVDLTLVGSCDENGQPRV GQWVLVHVGFAMSVINEAEARDTLDALQNMFDVEPDVGALLYGEEK" gene 2852136..2853257 /gene="hypD" /locus_tag="b2729" /gene_synonym="ECK2724; hydF; JW2699" /db_xref="EcoGene:EG10486" /db_xref="GeneID:947189" CDS 2852136..2853257 /gene="hypD" /locus_tag="b2729" /gene_synonym="ECK2724; hydF; JW2699" /function="phenotype; Energy metabolism, carbon: Anaerobic respiration" /GO_process="GO:0009061 - anaerobic respiration; GO:0006464 - protein modification process" /note="pleiotrophic effects on 3 hydrogenase isozymes" /codon_start=1 /transl_table=11 /product="hydrogenase maturation protein" /protein_id="NP_417209.1" /db_xref="GI:16130636" /db_xref="ASAP:ABE-0008965" /db_xref="UniProtKB/Swiss-Prot:P24192" /db_xref="EcoGene:EG10486" /db_xref="GeneID:947189" /translation="MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGH THAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRV PGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQ AKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDF HRPLVVAGFEPLDLLQGVVMLVQQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCV NGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPH QCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQESEA" gene 2853254..2854264 /gene="hypE" /locus_tag="b2730" /gene_synonym="ECK2725; hydB; JW2700" /db_xref="EcoGene:EG10487" /db_xref="GeneID:947182" CDS 2853254..2854264 /gene="hypE" /locus_tag="b2730" /gene_synonym="ECK2725; hydB; JW2700" /function="factor; Energy metabolism, carbon: Anaerobic respiration" /GO_process="GO:0009061 - anaerobic respiration; GO:0006457 - protein folding" /note="plays structural role in maturation of all 3 hydrogenases" /codon_start=1 /transl_table=11 /product="carbamoyl dehydratase, hydrogenases 1,2,3 maturation protein" /protein_id="NP_417210.2" /db_xref="GI:226524740" /db_xref="ASAP:ABE-0008967" /db_xref="UniProtKB/Swiss-Prot:P24193" /db_xref="EcoGene:EG10487" /db_xref="GeneID:947182" /translation="MNNIQLAHGSGGQAMQQLINSLFMEAFANPWLAEQEDQARLDLA QLVAEGDRLAFSTDSYVIDPLFFPGGNIGKLAICGTANDVAVSGAIPRYLSCGFILEE GLPMETLKAVVTSMAETARAAGIAIVTGDTKVVQRGAVDKLFINTAGMGAIPANIHWG AQTLTAGDVLLVSGTLGDHGATILNLREQLGLDGELVSDCAVLTPLIQTLRDIPGVKA LRDATRGGVNAVVHEFAAACGCGIELSEAALPVKPAVRGVCELLGLDALNFANEGKLV IAVERNAAEQVLAALHSHPLGKDAALIGEVVERKGVRLAGLYGVKRTLDLPHAEPLPR IC" gene 2854338..2856416 /gene="fhlA" /locus_tag="b2731" /gene_synonym="ECK2726; fhl; JW2701" /db_xref="EcoGene:EG10301" /db_xref="GeneID:947181" CDS 2854338..2856416 /gene="fhlA" /locus_tag="b2731" /gene_synonym="ECK2726; fhl; JW2701" /function="regulator; Energy metabolism, carbon: Fermentation" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006113 - fermentation; GO:0006350 - transcription" /note="formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons" /codon_start=1 /transl_table=11 /product="formate hydrogenlyase transcriptional activator" /protein_id="NP_417211.1" /db_xref="GI:16130638" /db_xref="ASAP:ABE-0008971" /db_xref="UniProtKB/Swiss-Prot:P19323" /db_xref="EcoGene:EG10301" /db_xref="GeneID:947181" /translation="MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALA DNAAIVLWQAQTQRASYYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFC ETWPQLDAGGLYPKFGHYCLMPLAAEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIV SVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYF DIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINL HERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR QIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVL KQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL FGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAF TFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI VLPEPETPPAATVVALEGEDEYQLIVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMK RLGIDKSALI" repeat_region 2856426..2856449 /note="REP198 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2856453..2856806) /gene="ygbA" /locus_tag="b2732" /gene_synonym="ECK2727; JW2702" /db_xref="EcoGene:EG11287" /db_xref="GeneID:947187" CDS complement(2856453..2856806) /gene="ygbA" /locus_tag="b2732" /gene_synonym="ECK2727; JW2702" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_417212.1" /db_xref="GI:16130639" /db_xref="ASAP:ABE-0008973" /db_xref="UniProtKB/Swiss-Prot:P25728" /db_xref="EcoGene:EG11287" /db_xref="GeneID:947187" /translation="MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKR LDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRP VPELPEKYRPKKPHE" gene 2857093..2859654 /gene="mutS" /locus_tag="b2733" /gene_synonym="ant; ECK2728; fdv; JW2703; plm" /db_xref="EcoGene:EG10625" /db_xref="GeneID:947206" CDS 2857093..2859654 /gene="mutS" /locus_tag="b2733" /gene_synonym="ant; ECK2728; fdv; JW2703; plm" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006281 - DNA repair" /note="methyl-directed mismatch repair" /codon_start=1 /transl_table=11 /product="methyl-directed mismatch repair protein" /protein_id="NP_417213.1" /db_xref="GI:16130640" /db_xref="ASAP:ABE-0008977" /db_xref="UniProtKB/Swiss-Prot:P23909" /db_xref="EcoGene:EG10625" /db_xref="GeneID:947206" /translation="MSAIENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDA KRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPATS KGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEP ADRETMAAELQRTNPAELLYAEDFAEMSLIEGRRGLRRRPLWEFEIDTARQQLNLQFG TRDLVGFGVENAPRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRN LEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDF TAGLQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLETVDSAPVQA LREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERL EVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKE YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLN YTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYM RQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILH NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKME GVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES ISPNAAATQVDGTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKSLV" gene 2859760..2860416 /gene="pphB" /locus_tag="b2734" /gene_synonym="ECK2729; JW2704; prpB; ygbH" /db_xref="EcoGene:EG13102" /db_xref="GeneID:947196" CDS 2859760..2860416 /gene="pphB" /locus_tag="b2734" /gene_synonym="ECK2729; JW2704; prpB; ygbH" /EC_number="3.1.3.16" /function="enzyme; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006464 - protein modification process" /note="protein phosphatase 2" /codon_start=1 /transl_table=11 /product="serine/threonine-specific protein phosphatase 2" /protein_id="NP_417214.1" /db_xref="GI:16130641" /db_xref="ASAP:ABE-0008980" /db_xref="UniProtKB/Swiss-Prot:P55799" /db_xref="EcoGene:EG13102" /db_xref="GeneID:947196" /translation="MPSTRYQKINAHHYRHIWVVGDIHGEYQLLQSRLHQLSFFPKID LLISVGDNIDRGPESLDVLRLLNQPWFTSVKGNHEAMALEAFETGDGNMWLASGGDWF FDLNDSEQQEAIDLLLKFHHLPHIIEITNDNIKYAIAHADYPGSEYLFGKEIAESELL WPVDRVQKSLNGELQQINGADYFIFGHMMFDNIQTFANQIYIDTGSPNSGRLSFYKIK " gene complement(2860467..2861234) /gene="ygbI" /locus_tag="b2735" /gene_synonym="ECK2730; JW2705" /db_xref="EcoGene:EG13103" /db_xref="GeneID:947204" CDS complement(2860467..2861234) /gene="ygbI" /locus_tag="b2735" /gene_synonym="ECK2730; JW2705" /function="putative regulator; Not classified" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative DEOR-type transcriptional regulator" /codon_start=1 /transl_table=11 /product="DeoR family putative transcriptional regulator" /protein_id="NP_417215.2" /db_xref="GI:226524741" /db_xref="ASAP:ABE-0008982" /db_xref="UniProtKB/Swiss-Prot:P52598" /db_xref="EcoGene:EG13103" /db_xref="GeneID:947204" /translation="MIPVERRQIILEMVAEKGIVSIAELTDRMNVSHMTIRRDLQKLE QQGAVVLVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVQPGSCIYLDAGT TTLAIAQHLIHMESLTVVTNDFVIADYLLDNSNCTIIHTGGAVCRENRSCVGEAAATM LRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDATKYGQVATWL ALPLSEFDQIITDDGLPESASRALVKQDLSLLVAKNE" gene 2861430..2862338 /gene="ygbJ" /locus_tag="b2736" /gene_synonym="ECK2731; JW2706" /db_xref="EcoGene:EG13104" /db_xref="GeneID:947200" CDS 2861430..2862338 /gene="ygbJ" /locus_tag="b2736" /gene_synonym="ECK2731; JW2706" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative dehydrogenase" /protein_id="NP_417216.1" /db_xref="GI:16130643" /db_xref="ASAP:ABE-0008986" /db_xref="UniProtKB/Swiss-Prot:Q46888" /db_xref="EcoGene:EG13104" /db_xref="GeneID:947200" /translation="MKTGSEFHVGIVGLGSMGMGAALSYVRAGLSTWGADLNSNACAT LKEAGACGVSDNAATFAEKLDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSST IASADAQEIATALAGFDLEMLDAPVSGGAVKAANGEMTVMASGSDIAFERLAPVLEAV AGKVYRIGAEPGLGSTVKIIHQLLAGVHIAAGAEAMALAARAGIPLDVMYDVVTNAAG NSWMFENRMRHVVDGDYTPHSAVDIFVKDLGLVADTAKALHFPLPLASTALNMFTSAS NAGYGKEDDSAVIKIFSGITLPGAKS" gene 2862335..2863501 /gene="ygbK" /locus_tag="b2737" /gene_synonym="ECK2732; JW2707" /db_xref="EcoGene:EG13105" /db_xref="GeneID:947199" CDS 2862335..2863501 /gene="ygbK" /locus_tag="b2737" /gene_synonym="ECK2732; JW2707" /codon_start=1 /transl_table=11 /product="FliA-regulated DUF1537 family protein" /protein_id="NP_417217.1" /db_xref="GI:16130644" /db_xref="ASAP:ABE-0008988" /db_xref="UniProtKB/Swiss-Prot:Q46889" /db_xref="EcoGene:EG13105" /db_xref="GeneID:947199" /translation="MIKIGVIADDFTGATDIASFLVENGLPTVQINGVPTGKMPEAID ALVISLKTRSCPVVEATQQSLAALSWLQQQGCKQIYFKYCSTFDSTAKGNIGPVTDAL MDALDTPFTVFSPALPVNGRTVYQGYLFVMNQLLAESGMRHHPVNPMTDSYLPRLVEA QSTGRCGVVSAHVFEQGVDAVRQELARLQQEGYRYAVLDALTEHHLEIQGEALRDAPL VTGGSGLAIGLARQWAQENGNQARKAGRPLAGRGVVLSGSCSQMTNRQVAHYRQIAPA REVDVARCLSIETLAAYAHELAEWVLGQESVLAPLVFATASTDALAAIQQQYGAQKAS QAVETLFSQLAARLAAEGVTRFIVAGGETSGVVTQSLGIKGFHIGPTISPACRG" gene 2863593..2864231 /gene="ygbL" /locus_tag="b2738" /gene_synonym="ECK2733; JW2708" /db_xref="EcoGene:EG13106" /db_xref="GeneID:947197" CDS 2863593..2864231 /gene="ygbL" /locus_tag="b2738" /gene_synonym="ECK2733; JW2708" /function="putative enzyme; Not classified" /note="putative epimerase/aldolase" /codon_start=1 /transl_table=11 /product="putative class II aldolase" /protein_id="NP_417218.1" /db_xref="GI:16130645" /db_xref="ASAP:ABE-0008994" /db_xref="UniProtKB/Swiss-Prot:Q46890" /db_xref="EcoGene:EG13106" /db_xref="GeneID:947197" /translation="MSDFAKVEQSLREEMTRIASSFFQRGYATGSAGNLSLLLPDGNL LATPTGSCLGNLDPQRLSKVAADGEWLSGDKPSKEVLFHLALYRNNPRCKAVVHLHST WSTALSCLQGLDSSNVIRPFTPYVVMRMGNVPLVPYYRPGDKRIAQDLAELAADNQAF LLANHGPVVCGESLQEAANNMEELEETAKLIFILGDRPIRYLTAGEIAELRS" gene 2864236..2865012 /gene="ygbM" /locus_tag="b2739" /gene_synonym="ECK2734; JW2709" /db_xref="EcoGene:EG13107" /db_xref="GeneID:947207" CDS 2864236..2865012 /gene="ygbM" /locus_tag="b2739" /gene_synonym="ECK2734; JW2709" /codon_start=1 /transl_table=11 /product="putative hydroxypyruvate isomerase" /protein_id="NP_417219.1" /db_xref="GI:16130646" /db_xref="ASAP:ABE-0008996" /db_xref="UniProtKB/Swiss-Prot:Q46891" /db_xref="EcoGene:EG13107" /db_xref="GeneID:947207" /translation="MPRFAANLSMMFTEVPFIERFAAARKAGFDAVEFLFPYNYSTLQ IQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNCEQV HVMAGVVPAGEDAERYRAVFIDNIRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQ ALAIVEEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQIAGLPDRHEPDDGE INYPWLFRLFDEVGYQGWIGCEYKPRGLTEEGLGWFDAWR" gene 2865101..2866465 /gene="ygbN" /locus_tag="b2740" /gene_synonym="ECK2735; JW2710" /db_xref="EcoGene:EG13108" /db_xref="GeneID:947208" CDS 2865101..2866465 /gene="ygbN" /locus_tag="b2740" /gene_synonym="ECK2735; JW2710" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="NP_417220.1" /db_xref="GI:16130647" /db_xref="ASAP:ABE-0008999" /db_xref="UniProtKB/Swiss-Prot:Q46892" /db_xref="EcoGene:EG13108" /db_xref="GeneID:947208" /translation="MSTITLLCIALAGVIMLLLLVIKAKVQPFVALLLVSLLVALAAG IPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTI AALTLAAFFLGIPVFFDVGFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPP HPGPVAAAGLLHADIGWLTIIGIAISIPVGVVGYFAAKIINKRQYAMSVEVLEQMQLA PASEEGATKLSDKINPPGVALVTSLIVIPIAIIMAGTVSATLMPPSHPLLGTLQLIGS PMVALMIALVLAFWLLALRRGWSLQHTSDIMGSALPTAAVVILVTGAGGVFGKVLVES GVGKALANMLQMIDLPLLPAAFIISLALRASQGSATVAILTTGGLLSEAVMGLNPIQC VLVTLAACFGGLGASHINDSGFWIVTKYLGLSVADGLKTWTVLTTILGFTGFLITWCV WAVI" repeat_region 2866479..2866496 /note="REP199 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2866559..2867551) /gene="rpoS" /locus_tag="b2741" /gene_synonym="abrD; appR; csi2; dpeB; ECK2736; JW5437; katF; nur; otsX; sigS" /db_xref="EcoGene:EG10510" /db_xref="GeneID:947210" CDS complement(2866559..2867551) /gene="rpoS" /locus_tag="b2741" /gene_synonym="abrD; appR; csi2; dpeB; ECK2736; JW5437; katF; nur; otsX; sigS" /function="enzyme; Global regulatory functions" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006970 - response to osmotic stress; GO:0006350 - transcription" /note="RNA polymerase, sigma S (sigma38) factor; synthesis of many growth phase related proteins" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma S (sigma 38) factor" /protein_id="NP_417221.1" /db_xref="GI:16130648" /db_xref="ASAP:ABE-0009001" /db_xref="UniProtKB/Swiss-Prot:P13445" /db_xref="EcoGene:EG10510" /db_xref="GeneID:947210" /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEE LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLAR RFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE" gene complement(2867614..2868753) /gene="nlpD" /locus_tag="b2742" /gene_synonym="ECK2737; JW2712" /db_xref="EcoGene:EG12111" /db_xref="GeneID:947011" CDS complement(2867614..2868753) /gene="nlpD" /locus_tag="b2742" /gene_synonym="ECK2737; JW2712" /function="enzyme; Murein sacculus, peptidoglycan; membrane; Macromolecule synthesis, modification: Lipoprotein" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="lipoprotein" /codon_start=1 /transl_table=11 /product="activator of AmiC murein hydrolase activity, lipoprotein" /protein_id="NP_417222.1" /db_xref="GI:16130649" /db_xref="ASAP:ABE-0009004" /db_xref="UniProtKB/Swiss-Prot:P0ADA3" /db_xref="EcoGene:EG12111" /db_xref="GeneID:947011" /translation="MSAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAP ANTNSGMLITPPPKMGTTSTAQQPQIQPVQQPQIQATQQPQIQPVQPVAQQPVQMENG RIVYNRQYGNIPKGSYSGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVG QTLQVGNASGTPITGGNAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSA NKMLPNNKPTATTVTAPVTVPTASTTEPTVSSTSTSTPISTWRWPTEGKVIETFGASE GGNKGIDIAGSKGQAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLV REQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR" gene complement(2868893..2869519) /gene="pcm" /locus_tag="b2743" /gene_synonym="ECK2738; JW2713" /db_xref="EcoGene:EG10689" /db_xref="GeneID:944923" CDS complement(2868893..2869519) /gene="pcm" /locus_tag="b2743" /gene_synonym="ECK2738; JW2713" /EC_number="2.1.1.77" /function="enzyme; Proteins - translation and modification" /GO_process="GO:0006464 - protein modification process" /codon_start=1 /transl_table=11 /product="L-isoaspartate protein carboxylmethyltransferase type II" /protein_id="NP_417223.1" /db_xref="GI:16130650" /db_xref="ASAP:ABE-0009006" /db_xref="UniProtKB/Swiss-Prot:P0A7A5" /db_xref="EcoGene:EG10689" /db_xref="GeneID:944923" /translation="MVSRRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKA WDNIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCS VERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMT QLDEGGILVLPVGEEHQYLKRVRRRGGEFIIDTVEAVRFVPLVKGELA" gene complement(2869513..2870274) /gene="umpG" /locus_tag="b2744" /gene_synonym="ECK2739; JW2714; surE; ygbC" /db_xref="EcoGene:EG11817" /db_xref="GeneID:947211" CDS complement(2869513..2870274) /gene="umpG" /locus_tag="b2744" /gene_synonym="ECK2739; JW2714; surE; ygbC" /function="phenotype; Not classified" /GO_process="GO:0006950 - response to stress" /note="survival protein" /codon_start=1 /transl_table=11 /product="broad specificity 5'(3')-nucleotidase and polyphosphatase" /protein_id="NP_417224.1" /db_xref="GI:16130651" /db_xref="ASAP:ABE-0009008" /db_xref="UniProtKB/Swiss-Prot:P0A840" /db_xref="EcoGene:EG11817" /db_xref="GeneID:947211" /translation="MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNS LTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVI YSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINV PDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVD EGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW" gene complement(2870255..2871304) /gene="truD" /locus_tag="b2745" /gene_synonym="ECK2740; JW2715; ygbO" /db_xref="EcoGene:EG13109" /db_xref="GeneID:947214" CDS complement(2870255..2871304) /gene="truD" /locus_tag="b2745" /gene_synonym="ECK2740; JW2715; ygbO" /EC_number="4.2.1.70" /function="enzyme; tRNA modification" /experiment="N-terminus verified by Edman degradation: PMID 12756329" /note="putative hydrogenase subunit" /codon_start=1 /transl_table=11 /product="tRNA(Glu) pseudouridine(13) synthase" /protein_id="NP_417225.1" /db_xref="GI:16130652" /db_xref="ASAP:ABE-0009011" /db_xref="UniProtKB/Swiss-Prot:Q57261" /db_xref="EcoGene:EG13109" /db_xref="GeneID:947214" /translation="MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHI LVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLS AFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYF GAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQ VVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQ AAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVV RELINTTGDYAHIAE" gene complement(2871301..2871780) /gene="ispF" /locus_tag="b2746" /gene_synonym="ECK2741; JW2716; ygbB" /db_xref="EcoGene:EG11816" /db_xref="GeneID:945057" CDS complement(2871301..2871780) /gene="ispF" /locus_tag="b2746" /gene_synonym="ECK2741; JW2716; ygbB" /EC_number="4.6.1.12" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase" /protein_id="NP_417226.1" /db_xref="GI:16130653" /db_xref="ASAP:ABE-0009013" /db_xref="UniProtKB/Swiss-Prot:P62617" /db_xref="EcoGene:EG11816" /db_xref="GeneID:945057" /translation="MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHAL TDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQA PKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK" gene complement(2871780..2872490) /gene="ispD" /locus_tag="b2747" /gene_synonym="ECK2742; JW2717; ygbP" /db_xref="EcoGene:EG13110" /db_xref="GeneID:948269" CDS complement(2871780..2872490) /gene="ispD" /locus_tag="b2747" /gene_synonym="ECK2742; JW2717; ygbP" /EC_number="2.7.7.60" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="4-diphosphocytidyl-2C-methyl-D-erythritol synthase" /protein_id="NP_417227.1" /db_xref="GI:16130654" /db_xref="ASAP:ABE-0009017" /db_xref="UniProtKB/Swiss-Prot:Q46893" /db_xref="EcoGene:EG13110" /db_xref="GeneID:948269" /translation="MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHA LLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWV LVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGL WHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPE DLALAEFYLTRTIHQENT" gene complement(2872509..2872820) /gene="ftsB" /locus_tag="b2748" /gene_synonym="ECK2743; JW2718; ygbQ" /db_xref="EcoGene:EG13111" /db_xref="GeneID:946033" CDS complement(2872509..2872820) /gene="ftsB" /locus_tag="b2748" /gene_synonym="ECK2743; JW2718; ygbQ" /codon_start=1 /transl_table=11 /product="cell division protein" /protein_id="NP_417228.1" /db_xref="GI:16130655" /db_xref="ASAP:ABE-0009019" /db_xref="UniProtKB/Swiss-Prot:P0A6S5" /db_xref="EcoGene:EG13111" /db_xref="GeneID:946033" /translation="MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNA KLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNN R" gene complement(2873014..2873337) /gene="ygbE" /locus_tag="b2749" /gene_synonym="ECK2744; JW2719" /db_xref="EcoGene:EG12707" /db_xref="GeneID:947268" CDS complement(2873014..2873337) /gene="ygbE" /locus_tag="b2749" /gene_synonym="ECK2744; JW2719" /function="putative enzyme; Not classified" /note="putative cytochrome oxidase subunit" /codon_start=1 /transl_table=11 /product="DUF3561 family inner membrane protein" /protein_id="NP_417229.1" /db_xref="GI:16130656" /db_xref="ASAP:ABE-0009021" /db_xref="UniProtKB/Swiss-Prot:P46141" /db_xref="EcoGene:EG12707" /db_xref="GeneID:947268" /translation="MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPML IYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALF MWLLG" gene complement(2873387..2873992) /gene="cysC" /locus_tag="b2750" /gene_synonym="ECK2745; JW2720" /db_xref="EcoGene:EG10185" /db_xref="GeneID:947221" CDS complement(2873387..2873992) /gene="cysC" /locus_tag="b2750" /gene_synonym="ECK2745; JW2720" /EC_number="2.7.1.25" /function="enzyme; Central intermediary metabolism: Sulfur metabolism" /GO_process="GO:0006790 - sulfur metabolic process" /codon_start=1 /transl_table=11 /product="adenosine 5'-phosphosulfate kinase" /protein_id="NP_417230.1" /db_xref="GI:16130657" /db_xref="ASAP:ABE-0009023" /db_xref="UniProtKB/Swiss-Prot:P0A6J1" /db_xref="EcoGene:EG10185" /db_xref="GeneID:947221" /translation="MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTV AGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLV VLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFT GIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS" gene complement(2873992..2875419) /gene="cysN" /locus_tag="b2751" /gene_synonym="ECK2746; JW2721" /db_xref="EcoGene:EG10194" /db_xref="GeneID:947219" CDS complement(2873992..2875419) /gene="cysN" /locus_tag="b2751" /gene_synonym="ECK2746; JW2721" /EC_number="2.7.7.4" /function="enzyme; Central intermediary metabolism: Sulfur metabolism" /experiment="N-terminus verified by Edman degradation: PMID 1316900" /GO_process="GO:0006790 - sulfur metabolic process" /note="ATP-sulfurylase (ATP:sulfate adenylyltransferase), subunit 1, probably a GTPase" /codon_start=1 /transl_table=11 /product="sulfate adenylyltransferase, subunit 1" /protein_id="NP_417231.1" /db_xref="GI:16130658" /db_xref="ASAP:ABE-0009026" /db_xref="UniProtKB/Swiss-Prot:P23845" /db_xref="EcoGene:EG10194" /db_xref="GeneID:947219" /translation="MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLI GRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF STEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGI KHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSE SMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQ RVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAV QSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNG IGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSA FELELNALVRRHFPHWGARDLLGDK" gene complement(2875421..2876329) /gene="cysD" /locus_tag="b2752" /gene_synonym="ECK2747; JW2722" /db_xref="EcoGene:EG10186" /db_xref="GeneID:947217" CDS complement(2875421..2876329) /gene="cysD" /locus_tag="b2752" /gene_synonym="ECK2747; JW2722" /EC_number="2.7.7.4" /function="enzyme; Central intermediary metabolism: Sulfur metabolism" /experiment="N-terminus verified by Edman degradation: PMID 1316900" /GO_process="GO:0006790 - sulfur metabolic process" /note="ATP:sulfurylase (ATP:sulfate adenylyltransferase), subunit 2" /codon_start=1 /transl_table=11 /product="sulfate adenylyltransferase, subunit 2" /protein_id="NP_417232.1" /db_xref="GI:16130659" /db_xref="ASAP:ABE-0009029" /db_xref="UniProtKB/Swiss-Prot:P21156" /db_xref="EcoGene:EG10186" /db_xref="GeneID:947217" /translation="MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVML HLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINP FVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDP KNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLE RDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVST TSERQGRVIDRDQAGSMELKKRQGYF" gene 2876581..2877618 /gene="iap" /locus_tag="b2753" /gene_synonym="ECK2748; JW2723" /db_xref="EcoGene:EG10488" /db_xref="GeneID:947215" CDS 2876581..2877618 /gene="iap" /locus_tag="b2753" /gene_synonym="ECK2748; JW2723" /EC_number="3.4.11.-" /function="enzyme; Proteins - translation and modification" /GO_process="GO:0006464 - protein modification process" /codon_start=1 /transl_table=11 /product="aminopeptidase in alkaline phosphatase isozyme conversion" /protein_id="NP_417233.1" /db_xref="GI:16130660" /db_xref="ASAP:ABE-0009033" /db_xref="UniProtKB/Swiss-Prot:P10423" /db_xref="EcoGene:EG10488" /db_xref="GeneID:947215" /translation="MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFF PGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIA AHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKN TPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGV KTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSV EATNWNLGNKDGYQQRAKTPAFPAGNSWHDVRLDNHQHIDKALPGRIERRCRDVMRIM LPLVKELAKAS" gene complement(2878569..2878853) /gene="ygbF" /locus_tag="b2754" /gene_synonym="cas2; ECK2749; JW5438" /db_xref="EcoGene:EG12845" /db_xref="GeneID:947213" CDS complement(2878569..2878853) /gene="ygbF" /locus_tag="b2754" /gene_synonym="cas2; ECK2749; JW5438" /codon_start=1 /transl_table=11 /product="CRISPR adaptation ssRNA endonuclease" /protein_id="NP_417234.2" /db_xref="GI:90111482" /db_xref="ASAP:ABE-0009036" /db_xref="UniProtKB/Swiss-Prot:P45956" /db_xref="EcoGene:EG12845" /db_xref="GeneID:947213" /translation="MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSAKIREMIW EQIAGLAEEGNVVMAWATNTETGFEFQTFGLNRRTPVDLDGLRLVSFLPV" gene complement(2878855..2879772) /gene="ygbT" /locus_tag="b2755" /gene_synonym="cas1; ECK2750; JW2725" /db_xref="EcoGene:EG13114" /db_xref="GeneID:947228" CDS complement(2878855..2879772) /gene="ygbT" /locus_tag="b2755" /gene_synonym="cas1; ECK2750; JW2725" /codon_start=1 /transl_table=11 /product="multifunctional endonuclease Cas1, CRISPR adaptation protein; DNA repair enzyme" /protein_id="NP_417235.1" /db_xref="GI:16130662" /db_xref="ASAP:ABE-0009038" /db_xref="UniProtKB/Swiss-Prot:Q46896" /db_xref="EcoGene:EG13114" /db_xref="GeneID:947228" /translation="MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHI PVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQ AKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYALLAKQYGVTW NGRRYDPKDWEKGDTINQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYD IADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGE IQPPAPPEDAQPVAIPLPVSLGDAGHRSS" gene complement(2879788..2880387) /gene="casE" /locus_tag="b2756" /gene_synonym="cas6e; cse3; ECK2751; JW2726; ygcH" /db_xref="EcoGene:EG13115" /db_xref="GeneID:947226" CDS complement(2879788..2880387) /gene="casE" /locus_tag="b2756" /gene_synonym="cas6e; cse3; ECK2751; JW2726; ygcH" /codon_start=1 /transl_table=11 /product="CRISPR RNA precursor cleavage enzyme; CRISP RNA (crRNA) containing Cascade antiviral complex protein" /protein_id="NP_417236.1" /db_xref="GI:16130663" /db_xref="ASAP:ABE-0009042" /db_xref="UniProtKB/Swiss-Prot:Q46897" /db_xref="EcoGene:EG13115" /db_xref="GeneID:947226" /translation="MYLSKVIIARAWSRDLYQLHQGLWHLFPNRPDAARDFLFHVEKR NTPEGCHVLLQSAQMPVSTAVATVIKTKQVEFQLQVGVPLYFRLRANPIKTILDNQKR LDSKGNIKRCRVPLIKEAEQIAWLQRKLGNAARVEDVHPISERPQYFSGDGKSGKIQT VCFEGVLTINDAPALIDLVQQGIGPAKSMGCGLLSLAPL" gene complement(2880374..2881048) /gene="casD" /locus_tag="b2757" /gene_synonym="cas5; ECK2752; JW5844; ygcI" /db_xref="EcoGene:EG13116" /db_xref="GeneID:947225" CDS complement(2880374..2881048) /gene="casD" /locus_tag="b2757" /gene_synonym="cas5; ECK2752; JW5844; ygcI" /codon_start=1 /transl_table=11 /product="CRISP RNA (crRNA) containing Cascade antiviral complex protein" /protein_id="NP_417237.2" /db_xref="GI:90111483" /db_xref="ASAP:ABE-0009044" /db_xref="UniProtKB/Swiss-Prot:Q46898" /db_xref="EcoGene:EG13116" /db_xref="GeneID:947225" /translation="MRSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACL GIQRDDTSSLQALSESVQFAVRCDELILDDRRVSVTGLRDYHTVLGAREDYRGLKSHE TIQTWREYLCDASFTVALWLTPHATMVISELEKAVLKPRYTPYLGRRSCPLTHPLFLG TCQASDPQKALLNYEPVGGDIYSEESVTGHHLKFTARDEPMITLPRQFASREWYVIKG GMDVSQ" gene complement(2881051..2882142) /gene="casC" /locus_tag="b2758" /gene_synonym="cas4; cas7; cse4; ECK2753; JW2728; ygcJ" /db_xref="EcoGene:EG13117" /db_xref="GeneID:947224" CDS complement(2881051..2882142) /gene="casC" /locus_tag="b2758" /gene_synonym="cas4; cas7; cse4; ECK2753; JW2728; ygcJ" /codon_start=1 /transl_table=11 /product="CRISP RNA (crRNA) containing Cascade antiviral complex protein" /protein_id="NP_417238.1" /db_xref="GI:16130665" /db_xref="ASAP:ABE-0009046" /db_xref="UniProtKB/Swiss-Prot:Q46899" /db_xref="EcoGene:EG13117" /db_xref="GeneID:947224" /translation="MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSL KRAMRKSGYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKSVDE AEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDI ALSGRMATSGMMTELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQE FSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPA DMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSL SDVDPITAQVKQMPTLEQLKSWVRNNGEA" gene complement(2882155..2882637) /gene="casB" /locus_tag="b2759" /gene_synonym="cse2; ECK2754; JW2729; ygcK" /db_xref="EcoGene:EG13118" /db_xref="GeneID:947223" CDS complement(2882155..2882637) /gene="casB" /locus_tag="b2759" /gene_synonym="cse2; ECK2754; JW2729; ygcK" /codon_start=1 /transl_table=11 /product="CRISP RNA (crRNA) containing Cascade antiviral complex protein" /protein_id="NP_417239.1" /db_xref="GI:16130666" /db_xref="ASAP:ABE-0009048" /db_xref="UniProtKB/Swiss-Prot:P76632" /db_xref="EcoGene:EG13118" /db_xref="GeneID:947223" /translation="MADEIDAMALYRAWQQLDNGSCAQIRRVSEPDELRDIPAFYRLV QPFGWENPRHQQALLRMVFCLSAGKNVIRHQDKKSEQTTGISLGRALANSGRINERRI FQLIRADRTADMVQLRRLLTHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKNA " gene complement(2882630..2884138) /gene="casA" /locus_tag="b2760" /gene_synonym="cse1; ECK2755; JW2730; ygcL" /db_xref="EcoGene:EG13119" /db_xref="GeneID:947222" CDS complement(2882630..2884138) /gene="casA" /locus_tag="b2760" /gene_synonym="cse1; ECK2755; JW2730; ygcL" /codon_start=1 /transl_table=11 /product="CRISP RNA (crRNA) containing Cascade antiviral complex protein" /protein_id="NP_417240.1" /db_xref="GI:16130667" /db_xref="ASAP:ABE-0009050" /db_xref="UniProtKB/Swiss-Prot:Q46901" /db_xref="EcoGene:EG13119" /db_xref="GeneID:947222" /translation="MNLLIDNWIPVRPRNGGKVQIINLQSLYCSRDQWRLSLPRDDME LAALALLVCIGQIIAPAKDDVEFRHRIMNPLTEDEFQQLIAPWIDMFYLNHAEHPFMQ TKGVKANDVTPMEKLLAGVSGATNCAFVNQPGQGEALCGGCTAIALFNQANQAPGFGG GFKSGLRGGTPVTTFVRGIDLRSTVLLNVLTLPRLQKQFPNESHTENQPTWIKPIKSN ESIPASSIGFVRGLFWQPAHIELCDPIGIGKCSCCGQESNLRYTGFLKEKFTFTVNGL WPHPHSPCLVTVKKGEVEEKFLAFTTSAPSWTQISRVVVDKIIQNENGNRVAAVVNQF RNIAPQSPLELIMGGYRNNQASILERRHDVLMFNQGWQQYGNVINEIVTVGLGYKTAL RKALYTFAEGFKNKDFKGAGVSVHETAERHFYRQSELLIPDVLANVNFSQADEVIADL RDKLHQLCEMLFNQSVAPYAHHPKLISTLALARATLYKHLRELKPQGGPSNG" gene complement(2884553..2887219) /gene="ygcB" /locus_tag="b2761" /gene_synonym="cas3; ECK2756; JW2731" /db_xref="EcoGene:EG12634" /db_xref="GeneID:947229" CDS complement(2884553..2887219) /gene="ygcB" /locus_tag="b2761" /gene_synonym="cas3; ECK2756; JW2731" /codon_start=1 /transl_table=11 /product="Cascade complex anti-viral R-loop helicase-annealase Cas3" /protein_id="NP_417241.1" /db_xref="GI:16130668" /db_xref="ASAP:ABE-0009054" /db_xref="UniProtKB/Swiss-Prot:P38036" /db_xref="EcoGene:EG12634" /db_xref="GeneID:947229" /translation="MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQ SVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLN GPSTQMCRKFNHGAAGLYWFNQDSLSEQSLGDFFSFFDAAPHPYESWFPWVEAVTGHH GFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCS SLLAGFCSLADWLGSWTTTNTFLFNEDAPSDINALRTYFQDRQQDASRVLELSGLVSN KRCYEGVHALLDNGYQPRQLQVLVDALPVAPGLTVIEAPTGSGKTETALAYAWKLIDQ QIADSVIFALPTQATANAMLTRMEASASHLFSSPNLILAHGNSRFNHLFQSIKSRAIT EQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLI VDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENN SAYPLINWRGVNGAQRFDLLAHPEQLPPRFSIQPEPICLADMLPDLTMLERMIAAANA GAQVCLICNLVDVAQVCYQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNG KRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPV ATILLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEM DEPEWVGNGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLP YVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGK QNLDGWVWQGNSIVITYTGDEGMTRVIPANPK" gene 2887354..2887409 /gene="sokX" /locus_tag="b4701" /gene_synonym="ECK4514" /db_xref="EcoGene:EG31187" /db_xref="GeneID:8764970" ncRNA 2887354..2887409 /ncRNA_class="antisense_RNA" /gene="sokX" /locus_tag="b4701" /gene_synonym="ECK4514" /product="sok-related sRNA, function unknown" /db_xref="EcoGene:EG31187" /db_xref="GeneID:8764970" gene complement(2887578..2888312) /gene="cysH" /locus_tag="b2762" /gene_synonym="ECK2757; JW2732" /db_xref="EcoGene:EG10189" /db_xref="GeneID:947230" CDS complement(2887578..2888312) /gene="cysH" /locus_tag="b2762" /gene_synonym="ECK2757; JW2732" /EC_number="1.8.4.8" /function="enzyme; Central intermediary metabolism: Sulfur metabolism" /GO_process="GO:0006790 - sulfur metabolic process" /codon_start=1 /transl_table=11 /product="phosphoadenosine phosphosulfate reductase; PAPS reductase, thioredoxin dependent" /protein_id="NP_417242.1" /db_xref="GI:16130669" /db_xref="ASAP:ABE-0009057" /db_xref="UniProtKB/Swiss-Prot:P17854" /db_xref="EcoGene:EG10189" /db_xref="GeneID:947230" /translation="MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNL PGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLK VYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ SGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTT RKWEPGMAEEETRFFGLKRECGLHEG" repeat_region 2888334..2888370 /note="REP200 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2888387..2890099) /gene="cysI" /locus_tag="b2763" /gene_synonym="ECK2758; JW2733" /db_xref="EcoGene:EG10190" /db_xref="GeneID:947231" CDS complement(2888387..2890099) /gene="cysI" /locus_tag="b2763" /gene_synonym="ECK2758; JW2733" /EC_number="1.8.1.2" /function="enzyme; Central intermediary metabolism: Sulfur metabolism" /GO_process="GO:0006790 - sulfur metabolic process" /note="sulfite reductase, alpha subunit" /codon_start=1 /transl_table=11 /product="sulfite reductase, beta subunit, NAD(P)-binding, heme-binding" /protein_id="NP_417243.1" /db_xref="GI:16130670" /db_xref="ASAP:ABE-0009061" /db_xref="UniProtKB/Swiss-Prot:P17846" /db_xref="EcoGene:EG10190" /db_xref="GeneID:947231" /translation="MSEKHPGPLVVEGKLTDAERMKHESNYLRGTIAEDLNDGLTGGF KGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKF AGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSN PYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKT TVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGY LPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPI RPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPARPLKTGLLEIAKIHKGDFRI TANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERF LPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGN RIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPAR DLWD" gene complement(2890099..2891898) /gene="cysJ" /locus_tag="b2764" /gene_synonym="ECK2759; JW2734" /db_xref="EcoGene:EG10191" /db_xref="GeneID:947239" CDS complement(2890099..2891898) /gene="cysJ" /locus_tag="b2764" /gene_synonym="ECK2759; JW2734" /EC_number="1.5.1.30" /EC_number="1.5.1.38" /EC_number="1.8.1.2" /function="enzyme; Central intermediary metabolism: Sulfur metabolism" /GO_process="GO:0006790 - sulfur metabolic process" /note="sulfite reductase (NADPH), flavoprotein beta subunit" /codon_start=1 /transl_table=11 /product="sulfite reductase, alpha subunit, flavoprotein" /protein_id="NP_417244.1" /db_xref="GI:16130671" /db_xref="ASAP:ABE-0009063" /db_xref="UniProtKB/Swiss-Prot:P38038" /db_xref="EcoGene:EG10191" /db_xref="GeneID:947239" /translation="MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVL NQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYK FKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEF FCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSV ATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGMRYQPGDAL GVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYAT LTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIAS SQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPAN PETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKD GVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQAL LEVIAEFGGMDTEAADEFLSELRVERRYQRDVY" gene 2892214..2892579 /gene="queD" /locus_tag="b2765" /gene_synonym="ECK2760; JW2735; sscR; ygcM" /db_xref="EcoGene:EG13120" /db_xref="GeneID:945123" CDS 2892214..2892579 /gene="queD" /locus_tag="b2765" /gene_synonym="ECK2760; JW2735; sscR; ygcM" /function="putative enzyme; Not classified" /note="putative 6-pyruvoyl tetrahydrobiopterin synthase" /codon_start=1 /transl_table=11 /product="6-pyruvoyl tetrahydrobiopterin synthase (PTPS)" /protein_id="NP_417245.1" /db_xref="GI:16130672" /db_xref="ASAP:ABE-0009068" /db_xref="UniProtKB/Swiss-Prot:P65870" /db_xref="EcoGene:EG13120" /db_xref="GeneID:945123" /translation="MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGE VDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPL LSAVMVKETCTAGCIYRGE" gene 2892657..2893928 /gene="ygcN" /locus_tag="b2766" /gene_synonym="ECK2761; JW2736" /db_xref="EcoGene:EG13121" /db_xref="GeneID:946114" CDS 2892657..2893928 /gene="ygcN" /locus_tag="b2766" /gene_synonym="ECK2761; JW2736" /function="putative enzyme; Not classified" /GO_function="GO:0009055 - electron carrier activity" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_417246.4" /db_xref="GI:90111484" /db_xref="ASAP:ABE-0009070" /db_xref="UniProtKB/Swiss-Prot:Q46904" /db_xref="EcoGene:EG13121" /db_xref="GeneID:946114" /translation="MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNL SGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRA RFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVL AERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGRICDDLPGGA FLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVP EGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHRE PQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKP VPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL" gene 2893919..2894179 /gene="ygcO" /locus_tag="b2767" /gene_synonym="ECK2762; JW2737" /db_xref="EcoGene:EG13122" /db_xref="GeneID:945120" CDS 2893919..2894179 /gene="ygcO" /locus_tag="b2767" /gene_synonym="ECK2762; JW2737" /GO_function="GO:0009055 - electron carrier activity" /codon_start=1 /transl_table=11 /product="putative 4Fe-4S cluster-containing protein" /protein_id="NP_417247.2" /db_xref="GI:90111485" /db_xref="ASAP:ABE-0009072" /db_xref="UniProtKB/Swiss-Prot:Q46905" /db_xref="EcoGene:EG13122" /db_xref="GeneID:945120" /translation="MSVARNLWRVADAPHIVPADSVERQTAERLINACPAGLFSLTPE GNLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG" gene 2894196..2894771 /gene="ygcP" /locus_tag="b2768" /gene_synonym="ECK2763; JW2738" /db_xref="EcoGene:EG13123" /db_xref="GeneID:947536" CDS 2894196..2894771 /gene="ygcP" /locus_tag="b2768" /gene_synonym="ECK2763; JW2738" /function="putative regulator; Not classified" /note="putative anti-terminator regulatory protein" /codon_start=1 /transl_table=11 /product="putative antiterminator regulatory protein" /protein_id="NP_417248.1" /db_xref="GI:16130675" /db_xref="ASAP:ABE-0009074" /db_xref="UniProtKB/Swiss-Prot:Q46906" /db_xref="EcoGene:EG13123" /db_xref="GeneID:947536" /translation="MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTIS NIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGF FCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVC DEEDARNAINAGVVALSTTNTGVWTLAKKLL" repeat_region 2894808..2894874 /note="REP201 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(2894919..2895779) /gene="ygcQ" /locus_tag="b2769" /gene_synonym="ECK2764; JW5440" /db_xref="EcoGene:EG13124" /db_xref="GeneID:946413" CDS complement(2894919..2895779) /gene="ygcQ" /locus_tag="b2769" /gene_synonym="ECK2764; JW5440" /function="putative enzyme; Not classified" /GO_function="GO:0009055 - electron carrier activity" /codon_start=1 /transl_table=11 /product="putative flavoprotein" /protein_id="NP_417249.4" /db_xref="GI:90111486" /db_xref="ASAP:ABE-0009077" /db_xref="UniProtKB/Swiss-Prot:Q46907" /db_xref="EcoGene:EG13124" /db_xref="GeneID:946413" /translation="MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQV LDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHW GNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSTEDLKNV TRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISG HLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEA LVTNIHADCQ" gene complement(2895776..2896555) /gene="ygcR" /locus_tag="b2770" /gene_synonym="ECK2765; JW5441" /db_xref="EcoGene:EG13125" /db_xref="GeneID:947240" CDS complement(2895776..2896555) /gene="ygcR" /locus_tag="b2770" /gene_synonym="ECK2765; JW5441" /function="putative transport; Not classified" /GO_function="GO:0009055 - electron carrier activity" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative flavoprotein" /protein_id="NP_417250.4" /db_xref="GI:90111487" /db_xref="ASAP:ABE-0009079" /db_xref="UniProtKB/Swiss-Prot:Q46908" /db_xref="EcoGene:EG13125" /db_xref="GeneID:947240" /translation="MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADE QAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPE FVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFI TLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPA MQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP" gene complement(2896533..2897870) /gene="ygcS" /locus_tag="b2771" /gene_synonym="ECK2766; JW5845" /db_xref="EcoGene:EG13126" /db_xref="GeneID:947238" CDS complement(2896533..2897870) /gene="ygcS" /locus_tag="b2771" /gene_synonym="ECK2766; JW5845" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative MFS sugar transporter; membrane protein" /protein_id="NP_417251.2" /db_xref="GI:90111488" /db_xref="ASAP:ABE-0009082" /db_xref="UniProtKB/Swiss-Prot:Q46909" /db_xref="EcoGene:EG13126" /db_xref="GeneID:947238" /translation="MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQ LTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQF FATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLAS IAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRY FGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQT IGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGS SLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPW VLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV" gene complement(2897964..2899418) /gene="ygcU" /locus_tag="b4463" /gene_synonym="ECK2767; JW5442; ygcT; ygcV" /db_xref="EcoGene:EG13128" /db_xref="GeneID:2847709" CDS complement(2897964..2899418) /gene="ygcU" /locus_tag="b4463" /gene_synonym="ECK2767; JW5442; ygcT; ygcV" /codon_start=1 /transl_table=11 /product="putative FAD-linked oxidoreductase" /protein_id="YP_026183.1" /db_xref="GI:49176267" /db_xref="ASAP:ABE-0174094" /db_xref="UniProtKB/Swiss-Prot:Q46911" /db_xref="EcoGene:EG13128" /db_xref="GeneID:2847709" /translation="MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHG IYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDG SAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRS IGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITE VTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHF ADGKCVLIFMAEGNPRIAKVTGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVA AERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQ NGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWS KLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK" gene complement(2899488..2900273) /gene="ygcW" /locus_tag="b2774" /gene_synonym="ECK2768; JW5443" /db_xref="EcoGene:EG13130" /db_xref="GeneID:947232" CDS complement(2899488..2900273) /gene="ygcW" /locus_tag="b2774" /gene_synonym="ECK2768; JW5443" /function="putative enzyme; Not classified" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="putative SDR family oxidoreductase" /protein_id="NP_417254.4" /db_xref="GI:90111489" /db_xref="ASAP:ABE-0009088" /db_xref="UniProtKB/Swiss-Prot:P76633" /db_xref="EcoGene:EG13130" /db_xref="GeneID:947232" /translation="MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGAN IFIPSFVKDNGETKEMIEKQGVEVDFMQVGITAEGAPQKIIAACCERFGTVDILVNNA GICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGG QWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVL DHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR" gene 2900592..2901869 /gene="yqcE" /locus_tag="b2775" /gene_synonym="ECK2769; JW2746; yqcF" /db_xref="EcoGene:EG13174" /db_xref="GeneID:947248" CDS 2900592..2901869 /gene="yqcE" /locus_tag="b2775" /gene_synonym="ECK2769; JW2746; yqcF" /function="putative transport; Not classified" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative MFS transporter, inner membrane protein" /protein_id="NP_417255.1" /db_xref="GI:16130682" /db_xref="ASAP:ABE-0009095" /db_xref="UniProtKB/Swiss-Prot:P77031" /db_xref="EcoGene:EG13174" /db_xref="GeneID:947248" /translation="MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSN TEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVML CIQIAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFS RFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVL RISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPL GGIITTYSKVKSPTRVIQILSVLGLLTLTALLVTNSNPQSVAMGIGLILLLGFTCYAS RGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWL MGMAALGMVIVFTFLLFQKIRTADSAPAMASSK" gene 2901896..2903374 /gene="ygcE" /locus_tag="b2776" /gene_synonym="ECK2770; JW5444" /db_xref="EcoGene:EG13033" /db_xref="GeneID:946193" CDS 2901896..2903374 /gene="ygcE" /locus_tag="b2776" /gene_synonym="ECK2770; JW5444" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative kinase" /protein_id="NP_417256.1" /db_xref="GI:16130683" /db_xref="ASAP:ABE-0009097" /db_xref="UniProtKB/Swiss-Prot:P55138" /db_xref="EcoGene:EG13033" /db_xref="GeneID:946193" /translation="MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDAD TAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLIS WQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSED AAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAG LLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSW LRDMLGESLIQDARAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMI GFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFA DVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDNMVRVKDIFIPIESNAKRY DAMNKGIFKDLTKHTDVILKKSYEVMHGELGNVDSIQSWSNA" gene complement(2904747..2905418) /gene="queE" /locus_tag="b2777" /gene_synonym="ECK2771; JW2748; ygcF" /db_xref="EcoGene:EG13034" /db_xref="GeneID:947527" CDS complement(2904747..2905418) /gene="queE" /locus_tag="b2777" /gene_synonym="ECK2771; JW2748; ygcF" /function="enzyme; cofactor biosynthesis" /GO_process="GO:0046138 - coenzyme and prosthetic group biosynthetic process" /codon_start=1 /transl_table=11 /product="7-carboxy-7-deazaguanine synthase; queosine biosynthesis" /protein_id="NP_417257.1" /db_xref="GI:16130684" /db_xref="ASAP:ABE-0009101" /db_xref="UniProtKB/Swiss-Prot:P64554" /db_xref="EcoGene:EG13034" /db_xref="GeneID:947527" /translation="MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTW EKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLL PLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKH PVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHK YLNIA" gene 2905557..2905697 /gene="yqcG" /locus_tag="b4682" /gene_synonym="ECK4497" /db_xref="EcoGene:EG14487" /db_xref="GeneID:7751618" CDS 2905557..2905697 /gene="yqcG" /locus_tag="b4682" /gene_synonym="ECK4497" /codon_start=1 /transl_table=11 /product="membrane stress resistance protein" /protein_id="YP_002791252.1" /db_xref="GI:226524742" /db_xref="UniProtKB/Swiss-Prot:C1P612" /db_xref="EcoGene:EG14487" /db_xref="GeneID:7751618" /translation="MSEENKENGFNHVKTFTKIIFIFSVLVFNDNEYKITDAAVNLFI QI" gene 2905711..2906583 /gene="ygcG" /locus_tag="b2778" /gene_synonym="ECK2772; JW5445" /db_xref="EcoGene:EG13035" /db_xref="GeneID:945247" CDS 2905711..2906583 /gene="ygcG" /locus_tag="b2778" /gene_synonym="ECK2772; JW5445" /codon_start=1 /transl_table=11 /product="TPM domain protein, putative phosphatase" /protein_id="NP_417258.4" /db_xref="GI:90111490" /db_xref="ASAP:ABE-0009108" /db_xref="UniProtKB/Swiss-Prot:P55140" /db_xref="EcoGene:EG13035" /db_xref="GeneID:945247" /translation="MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKEL THKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIVVAWSD RTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAKGLELAINALNNQLTSQHQY PTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDL FLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSG GGGSSGGGGASGRW" gene complement(2906643..2907941) /gene="eno" /locus_tag="b2779" /gene_synonym="ECK2773; JW2750" /db_xref="EcoGene:EG10258" /db_xref="GeneID:945032" CDS complement(2906643..2907941) /gene="eno" /locus_tag="b2779" /gene_synonym="ECK2773; JW2750" /EC_number="4.2.1.11" /function="enzyme; Energy metabolism, carbon: Glycolysis" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009061 - anaerobic respiration; GO:0006094 - gluconeogenesis; GO:0006096 - glycolysis" /codon_start=1 /transl_table=11 /product="enolase" /protein_id="NP_417259.1" /db_xref="GI:16130686" /db_xref="ASAP:ABE-0009110" /db_xref="UniProtKB/Swiss-Prot:P0A6P9" /db_xref="EcoGene:EG10258" /db_xref="GeneID:945032" /translation="MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTG SREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTEN KSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHA DNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGS NAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHF LEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKG IANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQI KTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA" gene complement(2908029..2909666) /gene="pyrG" /locus_tag="b2780" /gene_synonym="ECK2774; JW2751" /db_xref="EcoGene:EG10810" /db_xref="GeneID:946116" CDS complement(2908029..2909666) /gene="pyrG" /locus_tag="b2780" /gene_synonym="ECK2774; JW2751" /EC_number="6.3.4.2" /function="enzyme; Central intermediary metabolism: Nucleotide interconversions" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="CTP synthetase" /protein_id="NP_417260.1" /db_xref="GI:16130687" /db_xref="ASAP:ABE-0009112" /db_xref="UniProtKB/Swiss-Prot:P0A7E5" /db_xref="EcoGene:EG10810" /db_xref="GeneID:946116" /translation="MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPY INVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRK ERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQM AVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPA NERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEW EQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVE TRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARH VANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVD DSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPW FVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK" gene complement(2909894..2910685) /gene="mazG" /locus_tag="b2781" /gene_synonym="ECK2775; JW2752" /db_xref="EcoGene:EG10572" /db_xref="GeneID:947254" CDS complement(2909894..2910685) /gene="mazG" /locus_tag="b2781" /gene_synonym="ECK2775; JW2752" /codon_start=1 /transl_table=11 /product="nucleoside triphosphate pyrophosphohydrolase" /protein_id="NP_417261.1" /db_xref="GI:16130688" /db_xref="ASAP:ABE-0009117" /db_xref="UniProtKB/Swiss-Prot:P0AEY3" /db_xref="EcoGene:EG10572" /db_xref="GeneID:947254" /translation="MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVL DAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFAD SSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWT TLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQK ANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL" gene complement(2910756..2911091) /gene="mazF" /locus_tag="b2782" /gene_synonym="chpA; chpAK; ECK2776; JW2753" /db_xref="EcoGene:EG11249" /db_xref="GeneID:947252" CDS complement(2910756..2911091) /gene="mazF" /locus_tag="b2782" /gene_synonym="chpA; chpAK; ECK2776; JW2753" /function="putative factor; Not classified" /note="probable growth inhibitor, PemK-like, autoregulated" /codon_start=1 /transl_table=11 /product="mRNA interferase toxin, antitoxin is MazE" /protein_id="NP_417262.1" /db_xref="GI:16130689" /db_xref="ASAP:ABE-0009119" /db_xref="UniProtKB/Swiss-Prot:P0AE70" /db_xref="EcoGene:EG11249" /db_xref="GeneID:947252" /translation="MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTG MCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLI KAKINVLIG" gene complement(2911091..2911339) /gene="mazE" /locus_tag="b2783" /gene_synonym="chpAI; chpR; ECK2777; JW2754; tasA" /db_xref="EcoGene:EG10571" /db_xref="GeneID:947245" CDS complement(2911091..2911339) /gene="mazE" /locus_tag="b2783" /gene_synonym="chpAI; chpR; ECK2777; JW2754; tasA" /function="phenotype; Not classified" /note="suppressor of inhibitory function of ChpA, PemI-like, autoregulated" /codon_start=1 /transl_table=11 /product="antitoxin of the ChpA-ChpR toxin-antitoxin system" /protein_id="NP_417263.1" /db_xref="GI:16130690" /db_xref="ASAP:ABE-0009122" /db_xref="UniProtKB/Swiss-Prot:P0AE72" /db_xref="EcoGene:EG10571" /db_xref="GeneID:947245" /translation="MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLII EPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW" gene complement(2911417..2913651) /gene="relA" /locus_tag="b2784" /gene_synonym="ECK2778; JW2755; RC" /db_xref="EcoGene:EG10835" /db_xref="GeneID:947244" CDS complement(2911417..2913651) /gene="relA" /locus_tag="b2784" /gene_synonym="ECK2778; JW2755; RC" /EC_number="2.7.6.5" /function="enzyme; Global regulatory functions" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /note="(p)ppGpp synthetase I (GTP pyrophosphokinase); regulation of RNA synthesis; stringent factor" /codon_start=1 /transl_table=11 /product="(p)ppGpp synthetase I/GTP pyrophosphokinase" /protein_id="NP_417264.1" /db_xref="GI:16130691" /db_xref="ASAP:ABE-0009125" /db_xref="UniProtKB/Swiss-Prot:P0AG20" /db_xref="EcoGene:EG10835" /db_xref="GeneID:947244" /translation="MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQ QTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKS VVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHL REVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLL HERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDV RAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTV EIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGE MLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVP FTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAG RQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNK PSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGF ITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRD ITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARR LHGS" gene complement(2913699..2915000) /gene="rlmD" /locus_tag="b2785" /gene_synonym="ECK2779; JW2756; rumA; ygcA" /db_xref="EcoGene:EG11247" /db_xref="GeneID:947243" CDS complement(2913699..2915000) /gene="rlmD" /locus_tag="b2785" /gene_synonym="ECK2779; JW2756; rumA; ygcA" /EC_number="2.1.1.-" /function="enzyme; rRNA modification" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="23S rRNA m(5)U1939 methyltransferase, SAM-dependent" /protein_id="NP_417265.1" /db_xref="GI:16130692" /db_xref="ASAP:ABE-0009127" /db_xref="UniProtKB/Swiss-Prot:P55135" /db_xref="EcoGene:EG11247" /db_xref="GeneID:947243" /translation="MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGL LPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQR SKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVK QCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREK LERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVA RALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPA TLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK" gene 2915057..2917813 /gene="barA" /locus_tag="b2786" /gene_synonym="airS; ECK2780; gacC; JW2757" /db_xref="EcoGene:EG11367" /db_xref="GeneID:947255" CDS 2915057..2917813 /gene="barA" /locus_tag="b2786" /gene_synonym="airS; ECK2780; gacC; JW2757" /function="enzyme; Global regulatory functions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006464 - protein modification process" /note="sensor-regulator, activates OmpR by phophorylation" /codon_start=1 /transl_table=11 /product="hybrid sensory histidine kinase, in two-component regulatory system with UvrY" /protein_id="NP_417266.1" /db_xref="GI:16130693" /db_xref="ASAP:ABE-0009131" /db_xref="UniProtKB/Swiss-Prot:P0AEC5" /db_xref="EcoGene:EG11367" /db_xref="GeneID:947255" /translation="MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDA GASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFH LDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYI ALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRR GQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQN VELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTI ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTL NIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIR DTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNR GSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYS PTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKL KQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKL IGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQ QTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPE VNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGL VDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREAS KILG" repeat_region 2917888..2917982 /note="RIP202 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(2918045..2919385) /gene="gudD" /locus_tag="b2787" /gene_synonym="ECK2781; JW2758; ygcX" /db_xref="EcoGene:EG13167" /db_xref="GeneID:947258" CDS complement(2918045..2919385) /gene="gudD" /locus_tag="b2787" /gene_synonym="ECK2781; JW2758; ygcX" /EC_number="4.2.1.40" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="(D)-glucarate dehydratase 1; (L)-idarate dehydratase; (L)-idarate epimerase; (D)-glucarate epimerase" /codon_start=1 /transl_table=11 /product="D-glucarate dehydratase 1" /protein_id="NP_417267.1" /db_xref="GI:16130694" /db_xref="ASAP:ABE-0009134" /db_xref="UniProtKB/Swiss-Prot:P0AES2" /db_xref="EcoGene:EG13167" /db_xref="GeneID:947258" /translation="MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIK DNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQ TFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKAT PLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAE SIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMA EFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGL TWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQV PEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR" gene complement(2919406..2920746) /gene="gudX" /locus_tag="b2788" /gene_synonym="ECK2782; JW2759; ygcY" /db_xref="EcoGene:EG13168" /db_xref="GeneID:947261" CDS complement(2919406..2920746) /gene="gudX" /locus_tag="b2788" /gene_synonym="ECK2782; JW2759; ygcY" /function="putative enzyme; Not classified" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="putative (D)-glucarate dehydratase 2" /codon_start=1 /transl_table=11 /product="glucarate dehydratase-related protein, substrate unknown" /protein_id="NP_417268.1" /db_xref="GI:16130695" /db_xref="ASAP:ABE-0009136" /db_xref="UniProtKB/Swiss-Prot:Q46915" /db_xref="EcoGene:EG13168" /db_xref="GeneID:947261" /translation="MATQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTD NAGHTGIGEAPGGDVIYQTLVDAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGA WTFELRVNAVAALEAALLDLLGKALNVPVCELLGPGKQREAITVLGYLFYIGDRTKTD LPYVENTPGNHEWYQLRHQKAMNSEAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDT VRALKKRFPDARITVDPNGAWLLDEAISLCKGLNDVLTYAEDPCGAEQGFSGREVMAE FRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLT WGCHSNNHFDISLAMFTHVGAAAPGNPTAIDTHWIWQEGDCRLTQNPLEIKNGKIAVP DAPGLGVELDWEQVQKAHEAYKRLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH" gene complement(2920748..2922100) /gene="gudP" /locus_tag="b2789" /gene_synonym="ECK2783; JW2760; ygcZ" /db_xref="EcoGene:EG13169" /db_xref="GeneID:947265" CDS complement(2920748..2922100) /gene="gudP" /locus_tag="b2789" /gene_synonym="ECK2783; JW2760; ygcZ" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="putative D-glucarate permease (MFS family)" /codon_start=1 /transl_table=11 /product="putative D-glucarate transporter" /protein_id="NP_417269.1" /db_xref="GI:16130696" /db_xref="ASAP:ABE-0009139" /db_xref="UniProtKB/Swiss-Prot:Q46916" /db_xref="EcoGene:EG13169" /db_xref="GeneID:947265" /translation="MSSLSQAASSVEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGS EMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWSMFTLLQ GFVDIFSGFGIIVALFTLRFLVGLAEAPSFPGNSRIVAAWFPAQERGTAVSIFNSAQY FATVIFAPIMGWLTHEVGWSHVFFFMGGLGIVISFIWLKVIHEPNQHPGVNKKELEYI AAGGALINMDQQNTKVKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFP VYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGSLNIARKTPIVMGM LLSMVMVFCNYVNVEWMIIGFMALAFFGKGIGALGWAVMADTAPKEISGLSGGLFNMF GNISGIVTPIAIGYIVGTTGSFNGALIYVGVHALIAVLSYLVLVGDIKRIELKPVAGQ " gene complement(2922535..2922984) /gene="yqcA" /locus_tag="b2790" /gene_synonym="ECK2784; JW2761" /db_xref="EcoGene:EG13170" /db_xref="GeneID:947151" CDS complement(2922535..2922984) /gene="yqcA" /locus_tag="b2790" /gene_synonym="ECK2784; JW2761" /codon_start=1 /transl_table=11 /product="short-chain flavodoxin, FMN-binding" /protein_id="NP_417270.1" /db_xref="GI:16130697" /db_xref="ASAP:ABE-0009142" /db_xref="UniProtKB/Swiss-Prot:P65367" /db_xref="EcoGene:EG13170" /db_xref="GeneID:947151" /translation="MAEIGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPELSDW LPYQDKYVLVVTSTTGQGDLPDSIVPLFQGIKDSLGFQPNLRYGVIALGDSSYVNFCN GGKQFDALLQEQSAQRVGEMLLIDASENPEPETESNPWVEQWGTLLS" gene complement(2923002..2923784) /gene="truC" /locus_tag="b2791" /gene_synonym="ECK2785; JW2762; yqcB" /db_xref="EcoGene:EG13171" /db_xref="GeneID:947242" CDS complement(2923002..2923784) /gene="truC" /locus_tag="b2791" /gene_synonym="ECK2785; JW2762; yqcB" /EC_number="4.2.1.70" /function="enzyme; tRNA modification" /codon_start=1 /transl_table=11 /product="tRNA(Ile1,Asp) pseudouridine(65) synthase" /protein_id="NP_417271.1" /db_xref="GI:16130698" /db_xref="ASAP:ABE-0009147" /db_xref="UniProtKB/Swiss-Prot:P0AA41" /db_xref="EcoGene:EG13171" /db_xref="GeneID:947242" /translation="MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG QHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDY PLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGR KHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLT IHAGLDDTWMQALSQFGWRGLLPENERVEFSAPSGQDGEISS" gene complement(2923784..2924113) /gene="yqcC" /locus_tag="b2792" /gene_synonym="ECK2786; JW2763" /db_xref="EcoGene:EG13172" /db_xref="GeneID:946027" CDS complement(2923784..2924113) /gene="yqcC" /locus_tag="b2792" /gene_synonym="ECK2786; JW2763" /codon_start=1 /transl_table=11 /product="DUF446 family protein" /protein_id="NP_417272.1" /db_xref="GI:16130699" /db_xref="ASAP:ABE-0009152" /db_xref="UniProtKB/Swiss-Prot:Q46919" /db_xref="EcoGene:EG13172" /db_xref="GeneID:946027" /translation="MTTHDRVRLQLQALEALLREHQHWRNDEPQPHQFNSTQPFFMDT MEPLEWLQWVLIPRMHDLLDNKQPLPGAFAVAPYYEMALATDHPQRALILAELEKLDA LFADDAS" gene complement(2924156..2924524) /gene="csrB" /locus_tag="b4408" /gene_synonym="ECK2787; JWR0062" /db_xref="EcoGene:EG31119" /db_xref="GeneID:2847719" ncRNA complement(2924156..2924524) /ncRNA_class="other" /gene="csrB" /locus_tag="b4408" /gene_synonym="ECK2787; JWR0062" /product="CsrA-binding sRNA, antagonizing CsrA regulation" /note="CsrB regulatory RNA; binds global regulatory protein CsrA, antagonizing CsrA regulation, blocking the CsrA binding of glgC mRNA" /db_xref="ASAP:ABE-0047213" /db_xref="EcoGene:EG31119" /db_xref="GeneID:2847719" gene complement(2924735..2925280) /gene="syd" /locus_tag="b2793" /gene_synonym="ECK2788; JW2764; ydr" /db_xref="EcoGene:EG12959" /db_xref="GeneID:947271" CDS complement(2924735..2925280) /gene="syd" /locus_tag="b2793" /gene_synonym="ECK2788; JW2764; ydr" /experiment="N-terminus verified by Edman degradation: PMID 7890670" /GO_component="GO:0005737 - cytoplasm" /note="interacts with secY" /codon_start=1 /transl_table=11 /product="SecY-interacting protein" /protein_id="NP_417273.1" /db_xref="GI:16130700" /db_xref="ASAP:ABE-0009154" /db_xref="UniProtKB/Swiss-Prot:P0A8U0" /db_xref="EcoGene:EG12959" /db_xref="GeneID:947271" /translation="MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIIST TEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQ TWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGT RKRTHLASNLAEFLNQLKPLL" gene 2925348..2926196 /gene="queF" /locus_tag="b2794" /gene_synonym="ECK2789; JW2765; yqcD" /db_xref="EcoGene:EG13173" /db_xref="GeneID:947270" CDS 2925348..2926196 /gene="queF" /locus_tag="b2794" /gene_synonym="ECK2789; JW2765; yqcD" /EC_number="1.7.1.-" /function="enzyme; Queuosine biosynthesis" /codon_start=1 /transl_table=11 /product="7-cyano-7-deazaguanine reductase (NADPH-dependent)" /protein_id="NP_417274.1" /db_xref="GI:16130701" /db_xref="ASAP:ABE-0009162" /db_xref="UniProtKB/Swiss-Prot:Q46920" /db_xref="EcoGene:EG13173" /db_xref="GeneID:947270" /translation="MSSYANHQALAGLTLGKSTDYRDTYDASLLQGVPRSLNRDPLGL KADNLPFHGTDIWTLYELSWLNAKGLPQVAVGHVELDYTSVNLIESKSFKLYLNSFNQ TRFNNWDEVRQTLERDLSTCAQGKISVALYRLDELEGQPIGHFNGTCIDDQDITIDNY EFTTDYLENATCGEKVVEETLVSHLLKSNCLITHQPDWGSLQIQYRGRQIDREKLLRY LVSFRHHNEFHEQCVERIFNDLLRFCQPEKLSVYARYTRRGGLDINPWRSNSDFVPST TRLVRQ" gene 2926308..2927672 /gene="ygdH" /locus_tag="b2795" /gene_synonym="ECK2790; JW2766" /db_xref="EcoGene:EG12373" /db_xref="GeneID:947266" CDS 2926308..2927672 /gene="ygdH" /locus_tag="b2795" /gene_synonym="ECK2790; JW2766" /codon_start=1 /transl_table=11 /product="UPF0717 family protein" /protein_id="NP_417275.1" /db_xref="GI:16130702" /db_xref="ASAP:ABE-0009166" /db_xref="UniProtKB/Swiss-Prot:P0ADR8" /db_xref="EcoGene:EG12373" /db_xref="GeneID:947266" /translation="MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNS GSLTDNSKELLSRFENFDINVLRRERGVKLELINPPEEAFVDGRIIRALQANLFAVLR DILFVYGQIHNTVRFPNLNLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSIN ENEYLYARRVGNQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPS IIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPA NKDQVLPLILTGPKESADYFRVLDEFVVHTLGENARRHYRIIIDDAAEVARQMKKSMP LVKENRRDTGDAYSFNWSMRIAPDLQMPFEPSHENMANLKLYPDQPVEVLAADLRRAF SGIVAGNVKEVGIRAIEEFGPYKINGDKEIMRRMDDLLQGFVAQHRMKLPGSAYIPCY EICT" gene 2928229..2929518 /gene="sdaC" /locus_tag="b2796" /gene_synonym="dcrA; ECK2791; JW2767" /db_xref="EcoGene:EG12142" /db_xref="GeneID:947264" CDS 2928229..2929518 /gene="sdaC" /locus_tag="b2796" /gene_synonym="dcrA; ECK2791; JW2767" /function="putative transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006564 - L-serine biosynthetic process" /note="probable serine transporter" /codon_start=1 /transl_table=11 /product="putative serine transporter" /protein_id="NP_417276.1" /db_xref="GI:16130703" /db_xref="ASAP:ABE-0009169" /db_xref="UniProtKB/Swiss-Prot:P0AAD6" /db_xref="EcoGene:EG12142" /db_xref="GeneID:947264" /translation="METTQTSTIASKDSRSAWRKTDTMWMLGLYGTAIGAGVLFLPIN AGVGGMIPLIIMAILAFPMTFFAHRGLTRFVLSGKNPGEDITEVVEEHFGIGAGKLIT LLYFFAIYPILLVYSVAITNTVESFMSHQLGMTPPPRAILSLILIVGMMTIVRFGEQM IVKAMSILVFPFVGVLMLLALYLIPQWNGAALETLSLDTASATGNGLWMTLWLAIPVM VFSFNHSPIISSFAVAKREEYGDMAEQKCSKILAFAHIMMVLTVMFFVFSCVLSLTPA DLAAAKEQNISILSYLANHFNAPVIAWMAPIIAIIAITKSFLGHYLGAREGFNGMVIK SLRGKGKSIEINKLNRITALFMLVTTWIVATLNPSILGMIETLGGPIIAMILFLMPMY AIQKVPAMRKYSGHISNVFVVVMGLIAISAIFYSLFS" gene 2929576..2930943 /gene="sdaB" /locus_tag="b2797" /gene_synonym="ECK2792; JW2768" /db_xref="EcoGene:EG11623" /db_xref="GeneID:947262" CDS 2929576..2930943 /gene="sdaB" /locus_tag="b2797" /gene_synonym="ECK2792; JW2768" /EC_number="4.3.1.17" /function="enzyme; Degradation of small molecules: Amino acids" /GO_process="GO:0009063 - cellular amino acid catabolic process; GO:0019395 - fatty acid oxidation" /note="L-serine dehydratase (deaminase), L-SD2" /codon_start=1 /transl_table=11 /product="L-serine dehydratase 2" /protein_id="NP_417277.1" /db_xref="GI:16130704" /db_xref="ASAP:ABE-0009172" /db_xref="UniProtKB/Swiss-Prot:P30744" /db_xref="EcoGene:EG11623" /db_xref="GeneID:947262" /translation="MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARNLLKDVTR VVVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDSIPSFIQDVNTHGRLMLANGQ HEVEFPVDQCMNFHADNLSLHENGMRITALAGDKVVYSQTYYSIGGGFIVDEEHFGQQ DSAPVEVPYPYSSAADLQKHCQETGLSLSGLMMKNELALHSKEELEQHLANVWEVMRG GIERGISTEGVLPGKLRVPRRAAALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENA AGGRVVTAPTNGACGIIPAVLAYYDKFIREVNANSLARYLLVASAIGSLYKMNASISG AEVGCQGEVGVACSMAAAGLAELLGASPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPC IERNAIAAVKAVNAARMALRRTSEPRVCLDKVIETMYETGKDMNAKYRETSRGGLAMK IVACD" gene 2931055..2931810 /gene="ygdG" /locus_tag="b2798" /gene_synonym="ECK2793; exo; JW5446; xni" /db_xref="EcoGene:EG12372" /db_xref="GeneID:947256" CDS 2931055..2931810 /gene="ygdG" /locus_tag="b2798" /gene_synonym="ECK2793; exo; JW5446; xni" /EC_number="3.1.11.-" /GO_process="GO:0006308 - DNA catabolic process" /note="5'-3' exonuclease" /codon_start=1 /transl_table=11 /product="Ssb-binding protein, misidentified as ExoIX" /protein_id="NP_417278.4" /db_xref="GI:226524743" /db_xref="ASAP:ABE-0009174" /db_xref="UniProtKB/Swiss-Prot:P38506" /db_xref="EcoGene:EG12372" /db_xref="GeneID:947256" /translation="MAVHLLIVDALNLIRRIHAVQGSPCVETCQHALDQLIMHSQPTH AVAVFDDENRSSGWRHQRLPDYKAGRPPMPEELHDEMPALRAAFEQRGVPCWSTSGNE ADDLAATLAVKVTQAGHQATIVSTDKGYCQLLSPTLRIRDYFQKRWLDAPFIDKEFGV QPQQLPDYWGLAGISSSKVPGVAGIGPKSATQLLVEFQSLEGIYENLDAVAEKWRKKL ETHKEMAFLCRDIARLQTDLHIDGNLQQLRLVR" repeat_region 2931817..2931846 /note="REP203 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2931865..2933013) /gene="fucO" /locus_tag="b2799" /gene_synonym="ECK2794; JW2770" /db_xref="EcoGene:EG10351" /db_xref="GeneID:947273" CDS complement(2931865..2933013) /gene="fucO" /locus_tag="b2799" /gene_synonym="ECK2794; JW2770" /EC_number="1.1.1.77" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0009441 - glycolate metabolic process" /codon_start=1 /transl_table=11 /product="L-1,2-propanediol oxidoreductase" /protein_id="NP_417279.2" /db_xref="GI:345452723" /db_xref="ASAP:ABE-0009177" /db_xref="UniProtKB/Swiss-Prot:P0A9S1" /db_xref="EcoGene:EG10351" /db_xref="GeneID:947273" /translation="MANRMILNETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQC GVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQDT CKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTAAEVTINYVITDEEKRR KFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAIEGYITRGAWALTDALHI KAIEIIAGALRGSVAGDKDAGEEMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYNTPH GVANAILLPHVMRYNADFTGEKYRDIARVMGVKVEGMSLEEARNAAVEAVFALNRDVG IPPHLRDVGVRKEDIPALAQAALDDVCTGGNPREATLEDIVELYHTAW" gene complement(2933041..2933688) /gene="fucA" /locus_tag="b2800" /gene_synonym="ECK2795; fucC; JW2771; prd" /db_xref="EcoGene:EG10348" /db_xref="GeneID:947282" CDS complement(2933041..2933688) /gene="fucA" /locus_tag="b2800" /gene_synonym="ECK2795; fucC; JW2771; prd" /EC_number="4.1.2.17" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="L-fuculose-1-phosphate aldolase" /protein_id="NP_417280.1" /db_xref="GI:16130707" /db_xref="ASAP:ABE-0009179" /db_xref="UniProtKB/Swiss-Prot:P0AB87" /db_xref="EcoGene:EG10348" /db_xref="GeneID:947282" /translation="MERNKLARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTG IPYEKLTESHIVFIDGNGKHEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVS ILNRSIPAIHYMIAAAGGNSIPCAPYATFGTRELSEHVALALKNRKATLLQHHGLIAC EVNLEKALWLAHEVEVLAQLYLTTLAITDPVPVLSDEEIAVVLEKFKTYGLRIEE" gene 2934235..2935551 /gene="fucP" /locus_tag="b2801" /gene_synonym="ECK2796; JW2772" /db_xref="EcoGene:EG10352" /db_xref="GeneID:947487" CDS 2934235..2935551 /gene="fucP" /locus_tag="b2801" /gene_synonym="ECK2796; JW2772" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="fucose permease" /codon_start=1 /transl_table=11 /product="L-fucose transporter" /protein_id="NP_417281.1" /db_xref="GI:16130708" /db_xref="ASAP:ABE-0009187" /db_xref="UniProtKB/Swiss-Prot:P11551" /db_xref="EcoGene:EG10352" /db_xref="GeneID:947487" /translation="MGNTSIQTQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNL NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQT FNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAI VLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTA CWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALI AMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTII GGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFRSQTATN" gene 2935584..2937359 /gene="fucI" /locus_tag="b2802" /gene_synonym="ECK2797; JW2773" /db_xref="EcoGene:EG10349" /db_xref="GeneID:946195" CDS 2935584..2937359 /gene="fucI" /locus_tag="b2802" /gene_synonym="ECK2797; JW2773" /EC_number="5.3.1.25" /function="enzyme; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 8052131" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="L-fucose isomerase" /protein_id="NP_417282.1" /db_xref="GI:16130709" /db_xref="ASAP:ABE-0009189" /db_xref="UniProtKB/Swiss-Prot:P69922" /db_xref="EcoGene:EG10349" /db_xref="GeneID:946195" /translation="MKKISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALLTEK LRHACGAAVECVISDTCIAGMAEAAACEEKFSSQNVGLTITVTPCWCYGSETIDMDPT RPKAIWGFNGTERPGAVYLAAALAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLL RFARAGLAVASMKGKSYLSLGGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRID QKIYDEAELEMALAWADKNFRYGEDENNKQYQRNAEQSRAVLRESLLMAMCIRDMMQG NSKLADIGRVEESLGYNAIAAGFQGQRHWTDQYPNGDTAEAILNSSFDWNGVREPFVV ATENDSLNGVAMLMGHQLTGTAQVFADVRTYWSPEAIERVTGHKLDGLAEHGIIHLIN SGSAALDGSCKQRDSEGNPTMKPHWEISQQEADACLAATEWCPAIHEYFRGGGYSSRF LTEGGVPFTMTRVNIIKGLGPVLQIAEGWSVELPKDVHDILNKRTNSTWPTTWFAPRL TGKGPFTDVYSVMANWGANHGVLTIGHVGADFITLASMLRIPVCMHNVEETKVYRPSA WAAHGMDIEGQDYRACQNYGPLYKR" repeat_region 2937426..2937449 /note="REP204 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 2937468..2938886 /gene="fucK" /locus_tag="b2803" /gene_synonym="ECK2798; JW2774" /db_xref="EcoGene:EG10350" /db_xref="GeneID:946022" CDS 2937468..2938886 /gene="fucK" /locus_tag="b2803" /gene_synonym="ECK2798; JW2774" /EC_number="2.7.1.51" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="L-fuculokinase" /protein_id="NP_417283.2" /db_xref="GI:674842733" /db_xref="ASAP:ABE-0009191" /db_xref="UniProtKB/Swiss-Prot:P11553" /db_xref="EcoGene:EG10350" /db_xref="GeneID:946022" /translation="MKQEVILVLDCGATNVRAIAVNRQGKIVARASTPNASDIAMENN TWHQWSLDAILQRFADCCRQINSELTECHIRGIAVTTFGVDGALVDKQGNLLYPIISW KCPRTAAVMDNIERLISAQRLQAISGVGAFSFNTLYKLVWLKENHPQLLERAHAWLFI SSLINHRLTGEFTTDITMAGTSQMLDIQQRDFSPQILQATGIPRRLFPRLVEAGEQIG TLQNSAAAMLGLPVGIPVISAGHDTQFALFGAGAEQNEPVLSSGTWEILMVRSAQVDT SLLSQYAGSTCELDSQAGLYNPGMQWLASGVLEWVRKLFWTAETPWQMLIEEARLIAP GADGVKMQCDLLSCQNAGWQGVTLNTTRGHFYRAALEGLTAQLQRNLQMLEKIGHFKA SELLLVGGGSRNTLWNQIKANMLDIPVKVLDDAETTVAGAALFGWYGVGEFNSPEEAR AQIHYQYRYFYPQTEPEFIEEV" gene 2938888..2939310 /gene="fucU" /locus_tag="b2804" /gene_synonym="ECK2799; JW2775" /db_xref="EcoGene:EG10355" /db_xref="GeneID:945842" CDS 2938888..2939310 /gene="fucU" /locus_tag="b2804" /gene_synonym="ECK2799; JW2775" /function="phenotype; Degradation of small molecules: Carbon compounds" /note="protein of fucose operon" /codon_start=1 /transl_table=11 /product="L-fucose mutarotase" /protein_id="NP_417284.1" /db_xref="GI:16130711" /db_xref="ASAP:ABE-0009193" /db_xref="UniProtKB/Swiss-Prot:P0AEN8" /db_xref="EcoGene:EG10355" /db_xref="GeneID:945842" /translation="MLKTISPLISPELLKVLAEMGHGDEIIFSDAHFPAHSMGPQVIR ADGLLVSDLLQAIIPLFELDSYAPPLVMMAAVEGDTLDPEVERRYRNALSLQAPCPDI IRINRFAFYERAQKAFAIVITGERAKYGNILLKKGVTP" gene 2939368..2940099 /gene="fucR" /locus_tag="b2805" /gene_synonym="ECK2800; JW2776" /db_xref="EcoGene:EG10353" /db_xref="GeneID:946905" CDS 2939368..2940099 /gene="fucR" /locus_tag="b2805" /gene_synonym="ECK2800; JW2776" /function="regulator; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006350 - transcription" /note="positive regulator of the fuc operon" /codon_start=1 /transl_table=11 /product="l-fucose operon activator" /protein_id="NP_417285.1" /db_xref="GI:16130712" /db_xref="ASAP:ABE-0009195" /db_xref="UniProtKB/Swiss-Prot:P0ACK8" /db_xref="EcoGene:EG10353" /db_xref="GeneID:946905" /translation="MKAARQQAIVDLLLNHTSLTTEALSEQLKVSKETIRRDLNELQT QGKILRNHGRAKYIHRQNQDSGDPFHIRLKSHYAHKADIAREALAWIEEGMVIALDAS STCWYLARQLPDINIQVFTNSHPICHELGKRERIQLISSGGTLERKYGCYVNPSLISQ LKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEA RIGHLDEVTHIISDERQVATSLVTA" gene complement(2940143..2941243) /gene="rlmM" /locus_tag="b2806" /gene_synonym="ECK2801; JW2777; ygdE" /db_xref="EcoGene:EG11794" /db_xref="GeneID:947283" CDS complement(2940143..2941243) /gene="rlmM" /locus_tag="b2806" /gene_synonym="ECK2801; JW2777; ygdE" /function="enzyme; rRNA modification" /codon_start=1 /transl_table=11 /product="23S rRNA C2498 2'-O-ribose methyltransferase, SAM-dependent" /protein_id="NP_417286.1" /db_xref="GI:16130713" /db_xref="ASAP:ABE-0009197" /db_xref="UniProtKB/Swiss-Prot:P0ADR6" /db_xref="EcoGene:EG11794" /db_xref="GeneID:947283" /translation="MNKVVLLCRPGFEKECAAEITDKAGQREIFGFARVKENAGYVIY ECYQPDDGDKLIRELPFSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGE LRVEVADTNESKELLKFCRKFTVPLRAALRDAGVLANYETPKRPVVHVFFIAPGCCYT GYSYSNNNSPFYMGIPRLKFPADAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDL GACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVC DMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINA QIQARQLYHDREEVTVHVRRIWAAVGGRRDER" gene complement(2941236..2941631) /gene="ygdD" /locus_tag="b2807" /gene_synonym="ECK2802; JW2778" /db_xref="EcoGene:EG11793" /db_xref="GeneID:947279" CDS complement(2941236..2941631) /gene="ygdD" /locus_tag="b2807" /gene_synonym="ECK2802; JW2778" /codon_start=1 /transl_table=11 /product="UPF0382 family inner membrane protein" /protein_id="NP_417287.1" /db_xref="GI:16130714" /db_xref="ASAP:ABE-0009199" /db_xref="UniProtKB/Swiss-Prot:P0ADR2" /db_xref="EcoGene:EG11793" /db_xref="GeneID:947279" /translation="MTSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGL EYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVT PVGGVSFLAGWALMLVGAIRLKRKGVSHE" gene complement(2941650..2942567) /gene="gcvA" /locus_tag="b2808" /gene_synonym="ECK2803; JW2779" /db_xref="EcoGene:EG11795" /db_xref="GeneID:947278" CDS complement(2941650..2942567) /gene="gcvA" /locus_tag="b2808" /gene_synonym="ECK2803; JW2779" /function="regulator; Central intermediary metabolism: Pool, multipurpose conversions" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0009063 - cellular amino acid catabolic process; GO:0006350 - transcription" /note="positive regulator of gcv operon" /codon_start=1 /transl_table=11 /product="glycine cleavage system transcriptional activator; autorepressor" /protein_id="NP_417288.1" /db_xref="GI:16130715" /db_xref="ASAP:ABE-0009202" /db_xref="UniProtKB/Swiss-Prot:P0A9F6" /db_xref="EcoGene:EG11795" /db_xref="GeneID:947278" /translation="MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSL EDFLGLKLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLLP SFAIHWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKL YAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDASRRDWQTYTRQLGLNHINVQQGP IFSHSAMVLQAAIHGQGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQA ELGKIAAFRQWILAKAAAEQEKFRFRYEQ" gene 2942696..2942901 /gene="gcvB" /locus_tag="b4443" /gene_synonym="ECK2804; IS145; JWR0247; psrA11" /db_xref="EcoGene:EG31129" /db_xref="GeneID:2847720" ncRNA 2942696..2942901 /ncRNA_class="antisense_RNA" /gene="gcvB" /locus_tag="b4443" /gene_synonym="ECK2804; IS145; JWR0247; psrA11" /product="sRNA antisense regulator represses oppA, dppA, gltI and livJ expression, Hfq-dependent" /note="regulated by gcvA and gcvR" /function="represses oppA, dppA, gltI, and livJ expression; mechanism unknown" /db_xref="ASAP:ABE-0047263" /db_xref="EcoGene:EG31129" /db_xref="GeneID:2847720" gene complement(2942918..2943145) /gene="ygdI" /locus_tag="b2809" /gene_synonym="ECK2805; JW5448" /db_xref="EcoGene:EG13081" /db_xref="GeneID:947276" CDS complement(2942918..2943145) /gene="ygdI" /locus_tag="b2809" /gene_synonym="ECK2805; JW5448" /codon_start=1 /transl_table=11 /product="DUF903 family verified lipoprotein" /protein_id="NP_417289.2" /db_xref="GI:90111491" /db_xref="ASAP:ABE-0009214" /db_xref="UniProtKB/Swiss-Prot:P65292" /db_xref="EcoGene:EG13081" /db_xref="GeneID:947276" /translation="MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTD NDTGMISYKDANGNKQQINRTDVKEMVELDQ" gene 2943337..2944542 /gene="csdA" /locus_tag="b2810" /gene_synonym="ECK2806; JW2781; ygdJ" /db_xref="EcoGene:EG13082" /db_xref="GeneID:947275" CDS 2943337..2944542 /gene="csdA" /locus_tag="b2810" /gene_synonym="ECK2806; JW2781; ygdJ" /EC_number="4.4.1.-" /experiment="N-terminus verified by Edman degradation: PMID 9278392" /GO_process="GO:0006520 - cellular amino acid metabolic process; GO:0006790 - sulfur metabolic process" /codon_start=1 /transl_table=11 /product="cysteine sulfinate desulfinase" /protein_id="NP_417290.1" /db_xref="GI:16130717" /db_xref="ASAP:ABE-0009218" /db_xref="UniProtKB/Swiss-Prot:Q46925" /db_xref="EcoGene:EG13082" /db_xref="GeneID:947275" /translation="MNVFNPAQFRAQFPALQDAGVYLDSAATALKPEAVVEATQQFYS LSAGNVHRSQFAEAQRLTARYEAAREKVAQLLNAPDDKTIVWTRGTTESINMVAQCYA RPRLQPGDEIIVSVAEHHANLVPWLMVAQQTGAKVVKLPLNAQRLPDVDLLPELITPR SRILALGQMSNVTGGCPDLARAITFAHSAGMVVMVDGAQGAVHFPADVQQLDIDFYAF SGHKLYGPTGIGVLYGKSELLEAMSPWLGGGKMVHEVSFDGFTTQSAPWKLEAGTPNV AGVIGLSAALEWLADYDINQAESWSRSLATLAEDALAKRPGFRSFRCQDSSLLAFDFA GVHHSDMVTLLAEYGIALRAGQHCAQPLLAELGVTGTLRASFAPYNTKSDVDALVNAV DRALELLVD" gene 2944542..2944985 /gene="csdE" /locus_tag="b2811" /gene_synonym="ECK2807; JW2782; ygdK" /db_xref="EcoGene:EG13083" /db_xref="GeneID:947274" CDS 2944542..2944985 /gene="csdE" /locus_tag="b2811" /gene_synonym="ECK2807; JW2782; ygdK" /codon_start=1 /transl_table=11 /product="CsdA-binding activator; Fe-S protein" /protein_id="NP_417291.1" /db_xref="GI:16130718" /db_xref="ASAP:ABE-0009220" /db_xref="UniProtKB/Swiss-Prot:P0AGF2" /db_xref="EcoGene:EG13083" /db_xref="GeneID:947274" /translation="MTNPQFAGHPFGTTVTAETLRNTFAPLTQWEDKYRQLIMLGKQL PALPDELKAQAKEIAGCENRVWLGYTVAENGKMHFFGDSEGRIVRGLLAVLLTAVEGK TAAELQAQSPLALFDELGLRAQLSASRSQGLNALSEAIIAATKQV" repeat_region 2944994..2945027 /note="REP205 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2945036..2945842) /gene="tcdA" /locus_tag="b2812" /gene_synonym="csdL; ECK2808; JW2783; ygdL" /db_xref="EcoGene:EG13084" /db_xref="GeneID:947291" CDS complement(2945036..2945842) /gene="tcdA" /locus_tag="b2812" /gene_synonym="csdL; ECK2808; JW2783; ygdL" /function="putative enzyme; Not classified" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="tRNA threonylcarbamoyladenosine dehydratase; sulfur acceptor for CsdA" /protein_id="NP_417292.1" /db_xref="GI:16130719" /db_xref="ASAP:ABE-0009223" /db_xref="UniProtKB/Swiss-Prot:Q46927" /db_xref="EcoGene:EG13084" /db_xref="GeneID:947291" /translation="MSVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSW AAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRV TVVDDFVTPDNVAQYMSVGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQID PTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQSDGT VCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKMMAKAARQG" repeat_region 2945896..2945992 /note="RIP206 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(2946081..2947178) /gene="mltA" /locus_tag="b2813" /gene_synonym="ECK2809; JW2784; mlt; ygdM" /db_xref="EcoGene:EG13085" /db_xref="GeneID:944964" CDS complement(2946081..2947178) /gene="mltA" /locus_tag="b2813" /gene_synonym="ECK2809; JW2784; mlt; ygdM" /EC_number="3.2.1.-" /function="enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /codon_start=1 /transl_table=11 /product="membrane-bound lytic murein transglycosylase A" /protein_id="NP_417293.1" /db_xref="GI:16130720" /db_xref="ASAP:ABE-0009228" /db_xref="UniProtKB/Swiss-Prot:P0A935" /db_xref="EcoGene:EG13085" /db_xref="GeneID:944964" /translation="MKGRWVKYLLMGTVVAMLAACSSKPTDRGQQYKDGKFTQPFSLV NQPDAVGAPINAGDFAEQINHIRNSSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQFGI DAWQMEGADNYGNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLPSRAEIYAGA LSDKYILAYSNSLMDNFIMDVQGSGYIDFGDGSPLNFFSYAGKNGHAYRSIGKVLIDR GEVKKEDMSMQAIRHWGETHSEAEVRELLEQNPSFVFFKPQSFAPVKGASAVPLVGRA SVASDRSIIPPGTTLLAEVPLLDNNGKFNGQYELRLMVALDVGGAIKGQHFDIYQGIG PEAGHRAGWYNHYGRVWVLKTAPGAGNVFSG" gene 2947387..2947463 /gene="metZ" /locus_tag="b2814" /gene_synonym="ECK2810; JWR0206; metZalpha" /db_xref="EcoGene:EG30062" /db_xref="GeneID:947198" tRNA 2947387..2947463 /gene="metZ" /locus_tag="b2814" /gene_synonym="ECK2810; JWR0206; metZalpha" /product="tRNA-Met" /note="anticodon: CAU" /db_xref="ASAP:ABE-0009232" /db_xref="EcoGene:EG30062" /db_xref="GeneID:947198" gene 2947497..2947573 /gene="metW" /locus_tag="b2815" /gene_synonym="ECK2811; JWR0207" /db_xref="EcoGene:EG31117" /db_xref="GeneID:947292" tRNA 2947497..2947573 /gene="metW" /locus_tag="b2815" /gene_synonym="ECK2811; JWR0207" /product="tRNA-Met" /note="anticodon: CAU" /db_xref="ASAP:ABE-0009234" /db_xref="EcoGene:EG31117" /db_xref="GeneID:947292" gene 2947607..2947683 /gene="metV" /locus_tag="b2816" /gene_synonym="ECK2812; JWR0208; metX; metZbeta" /db_xref="EcoGene:EG30060" /db_xref="GeneID:946037" tRNA 2947607..2947683 /gene="metV" /locus_tag="b2816" /gene_synonym="ECK2812; JWR0208; metX; metZbeta" /product="tRNA-Met" /note="anticodon: CAU" /db_xref="ASAP:ABE-0009236" /db_xref="EcoGene:EG30060" /db_xref="GeneID:946037" gene complement(2947757..2949010) /gene="amiC" /locus_tag="b2817" /gene_synonym="ECK2813; JW5449; ygdN" /db_xref="EcoGene:EG13086" /db_xref="GeneID:947293" CDS complement(2947757..2949010) /gene="amiC" /locus_tag="b2817" /gene_synonym="ECK2813; JW5449; ygdN" /EC_number="3.5.1.28" /function="putative enzyme; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-L-alanine amidase" /protein_id="NP_417294.4" /db_xref="GI:90111492" /db_xref="ASAP:ABE-0009238" /db_xref="UniProtKB/Swiss-Prot:P63883" /db_xref="EcoGene:EG13086" /db_xref="GeneID:947293" /translation="MSGSNTAISRRRLLQGAGAMWLLSVSQVSLAAVSQVVAVRVWPA SSYTRVTVESNRQLKYKQFALSNPERVVVDIEDVNLNSVLKGMAAQIRADDPFIKSAR VGQFDPQTVRMVFELKQNVKPQLFALAPVAGFKERLVMDLYPANAQDMQDPLLALLED YNKGDLEKQVPPAQSGPQPGKAGRDRPIVIMLDPGHGGEDSGAVGKYKTREKDVVLQI ARRLRSLIEKEGNMKVYMTRNEDIFIPLQVRVAKAQKQRADLFVSIHADAFTSRQPSG SSVFALSTKGATSTAAKYLAQTQNASDLIGGVSKSGDRYVDHTMFDMVQSLTIADSLK FGKAVLNKLGKINKLHKNQVEQAGFAVLKAPDIPSILVETAFISNVEEERKLKTATFQ QEVAESILAGIKAYFADGATLARRG" gene 2949242..2950573 /gene="argA" /locus_tag="b2818" /gene_synonym="Arg1; Arg2; argB; ECK2814; JW2786" /db_xref="EcoGene:EG10063" /db_xref="GeneID:947289" CDS 2949242..2950573 /gene="argA" /locus_tag="b2818" /gene_synonym="Arg1; Arg2; argB; ECK2814; JW2786" /EC_number="2.3.1.1" /function="enzyme; Amino acid biosynthesis: Arginine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006526 - arginine biosynthetic process" /note="N-acetylglutamate synthase; amino acid acetyltransferase" /codon_start=1 /transl_table=11 /product="amino acid N-acetyltransferase and inactive acetylglutamate kinase" /protein_id="NP_417295.1" /db_xref="GI:16130722" /db_xref="ASAP:ABE-0009245" /db_xref="UniProtKB/Swiss-Prot:P0A6C5" /db_xref="EcoGene:EG10063" /db_xref="GeneID:947289" /translation="MVKERKTELVEGFRHSVPYINTHRGKTFVIMLGGEAIEHENFSS IVNDIGLLHSLGIRLVVVYGARPQIDANLAAHHHEPLYHKNIRVTDAKTLELVKQAAG TLQLDITARLSMSLNNTPLQGAHINVVSGNFIIAQPLGVDDGVDYCHSGRIRRIDEDA IHRQLDSGAIVLMGPVAVSVTGESFNLTSEEIATQLAIKLKAEKMIGFCSSQGVTNDD GDIVSELFPNEAQARVEAQEEKGDYNSGTVRFLRGAVKACRSGVRRCHLISYQEDGAL LQELFSRDGIGTQIVMESAEQIRRATINDIGGILELIRPLEQQGILVRRSREQLEMEI DKFTIIQRDNTTIACAALYPFPEEKIGEMACVAVHPDYRSSSRGEVLLERIAAQAKQS GLSKLFVLTTRSIHWFQERGFTPVDIDLLPESKKQLYNYQRKSKVLMADLG" repeat_region 2950613..2950626 /note="REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2950635..2952461) /gene="recD" /locus_tag="b2819" /gene_synonym="ECK2815; hopE; JW2787" /db_xref="EcoGene:EG10826" /db_xref="GeneID:947287" CDS complement(2950635..2952461) /gene="recD" /locus_tag="b2819" /gene_synonym="ECK2815; hopE; JW2787" /EC_number="3.1.11.5" /function="enzyme; Degradation of DNA" /experiment="N-terminus verified by Edman degradation: PMID 1618858" /GO_process="GO:0006308 - DNA catabolic process; GO:0006310 - DNA recombination" /note="DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease" /codon_start=1 /transl_table=11 /product="exonuclease V (RecBCD complex), alpha chain" /protein_id="NP_417296.1" /db_xref="GI:16130723" /db_xref="ASAP:ABE-0009247" /db_xref="UniProtKB/Swiss-Prot:P04993" /db_xref="EcoGene:EG10826" /db_xref="GeneID:947287" /translation="MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSH DAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMIL CGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAV ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL PMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTG THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFG VAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELV YTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSSRE" gene complement(2952461..2956003) /gene="recB" /locus_tag="b2820" /gene_synonym="ECK2816; ior; JW2788; rorA" /db_xref="EcoGene:EG10824" /db_xref="GeneID:947286" CDS complement(2952461..2956003) /gene="recB" /locus_tag="b2820" /gene_synonym="ECK2816; ior; JW2788; rorA" /EC_number="3.1.11.5" /function="enzyme; Degradation of DNA" /GO_process="GO:0006308 - DNA catabolic process; GO:0006310 - DNA recombination" /note="DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease" /codon_start=1 /transl_table=11 /product="exonuclease V (RecBCD complex), beta subunit" /protein_id="NP_417297.1" /db_xref="GI:16130724" /db_xref="ASAP:ABE-0009249" /db_xref="UniProtKB/Swiss-Prot:P08394" /db_xref="EcoGene:EG10824" /db_xref="GeneID:947286" /translation="MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGL GGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLE EIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLR YQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETL ASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEE TNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAE IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQ QYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSA PGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN ALDIETLNNDEHAWDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGER RLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVT IHKSKGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLDLNAAPESVDLAEAERLAED LRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC IEALCDDDIAWQTAQTGDNQPWQVNDVSTAELNAKTLQRLPGDNWRVTSYSGLQQRGH GIAQDLMPRLDVDAAGVASVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNW VREKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSARNKQVEMEFYLPISEP LIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE DSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYEHHFGGVIYLFLRGV DKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA" gene complement(2955996..2958884) /gene="ptrA" /locus_tag="b2821" /gene_synonym="ECK2817; JW2789; ptr" /db_xref="EcoGene:EG10786" /db_xref="GeneID:947284" CDS complement(2955996..2958884) /gene="ptrA" /locus_tag="b2821" /gene_synonym="ECK2817; JW2789; ptr" /EC_number="3.4.24.55" /function="enzyme; Degradation of proteins, peptides, glyco" /codon_start=1 /transl_table=11 /product="protease III" /protein_id="NP_417298.1" /db_xref="GI:16130725" /db_xref="ASAP:ABE-0009252" /db_xref="UniProtKB/Swiss-Prot:P05458" /db_xref="EcoGene:EG10786" /db_xref="GeneID:947284" /translation="MPRSTWFKALLLLVALWAPLSQAETGWQPIQETIRKSDKDNRQY QAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYP QADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAE RERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQAL KDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKG IIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVE GISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDEL ANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMT PQNARIWYISPKEPHNKTAYFVDAPYQVDKISAQTFADWQKKAADIALSLPELNPYIP DDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQ VMFALNDYLAGLALDQLSNQASVGGISFSTNANNGLMVNANGYTQRLPQLFQALLEGY FSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSI TLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVD KKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLG YAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQ AVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVV EPQGMAILSQISGSQNGKAEYVHPEGWKVWENVSALQQTMPLMSEKNE" gene complement(2959060..2962428) /gene="recC" /locus_tag="b2822" /gene_synonym="ECK2818; JW2790" /db_xref="EcoGene:EG10825" /db_xref="GeneID:947294" CDS complement(2959060..2962428) /gene="recC" /locus_tag="b2822" /gene_synonym="ECK2818; JW2790" /EC_number="3.1.11.5" /function="enzyme; Degradation of DNA" /experiment="N-terminus verified by Edman degradation: PMID 3520484" /GO_process="GO:0006308 - DNA catabolic process; GO:0006310 - DNA recombination" /note="DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease" /codon_start=1 /transl_table=11 /product="exonuclease V (RecBCD complex), gamma chain" /protein_id="NP_417299.1" /db_xref="GI:16130726" /db_xref="ASAP:ABE-0009255" /db_xref="UniProtKB/Swiss-Prot:P07648" /db_xref="EcoGene:EG10825" /db_xref="GeneID:947294" /translation="MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQ WLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQL LEREDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGE AQAWQAPLWKALVEYTHQLGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISA LPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPL FRDSENAGQLFNSDGEQDVGNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNL LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDR LLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPV LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDD DNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS LLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGL GAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMND GVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNS ERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE RQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVN FRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGE IFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLL SVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREG MSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDI WYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS" gene complement(2962441..2962764) /gene="ppdC" /locus_tag="b2823" /gene_synonym="ECK2819; JW2791; ygdA" /db_xref="EcoGene:EG11154" /db_xref="GeneID:945797" CDS complement(2962441..2962764) /gene="ppdC" /locus_tag="b2823" /gene_synonym="ECK2819; JW2791; ygdA" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /GO_process="GO:0009101 - glycoprotein biosynthetic process" /note="prepilin peptidase dependent protein C" /codon_start=1 /transl_table=11 /product="putative prepilin peptidase-dependent protein" /protein_id="NP_417300.1" /db_xref="GI:16130727" /db_xref="ASAP:ABE-0009257" /db_xref="UniProtKB/Swiss-Prot:P08372" /db_xref="EcoGene:EG11154" /db_xref="GeneID:945797" /translation="MSASLKNQQGFSLPEVMLAMVLMVMIVTALSGFQRTLMNSLASR NQYQQLWRHGWQQTQLRAISPPANWQVNRMQTSQAGCVSISVTLVSPGGREGEMTRLH CPNRQ" gene complement(2962749..2963156) /gene="ygdB" /locus_tag="b2824" /gene_synonym="ECK2820; JW5450" /db_xref="EcoGene:EG11155" /db_xref="GeneID:944763" CDS complement(2962749..2963156) /gene="ygdB" /locus_tag="b2824" /gene_synonym="ECK2820; JW5450" /codon_start=1 /transl_table=11 /product="DUF2509 family protein" /protein_id="NP_417301.4" /db_xref="GI:90111493" /db_xref="ASAP:ABE-0009261" /db_xref="UniProtKB/Swiss-Prot:P08370" /db_xref="EcoGene:EG11155" /db_xref="GeneID:944763" /translation="MNREKGVSSLALVLMLLVLGSLLLQGMSQQDRSFASRVSMESQS LRRQAIVQSALAWGKMHCWQTQPAVQCSQYAETDAQVCLRLLADNEALLIAGYEGVSL WRTGEVIDGNIVFSPRGWSDFCPLKERALCQLP" gene complement(2963153..2963716) /gene="ppdB" /locus_tag="b2825" /gene_synonym="ECK2821; JW5451; ygdC" /db_xref="EcoGene:EG11156" /db_xref="GeneID:948985" CDS complement(2963153..2963716) /gene="ppdB" /locus_tag="b2825" /gene_synonym="ECK2821; JW5451; ygdC" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /GO_process="GO:0009101 - glycoprotein biosynthetic process" /note="prepilin peptidase dependent protein B" /codon_start=1 /transl_table=11 /product="putative prepilin peptidase-dependent protein" /protein_id="NP_417302.1" /db_xref="GI:16130729" /db_xref="ASAP:ABE-0009263" /db_xref="UniProtKB/Swiss-Prot:P08371" /db_xref="EcoGene:EG11156" /db_xref="GeneID:948985" /translation="MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRK LALEDEIWLRVFTVAKHLQRAGYCHGICTGEGLEIVGQGDCVIVQWDANSNGIWDREP VKESDQIGFRLKEHVLETLRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVL TVNMRAASKSEPQTVVNASYSVTGFNL" gene complement(2963707..2964177) /gene="ppdA" /locus_tag="b2826" /gene_synonym="ECK2822; JW2794" /db_xref="EcoGene:EG12081" /db_xref="GeneID:945393" CDS complement(2963707..2964177) /gene="ppdA" /locus_tag="b2826" /gene_synonym="ECK2822; JW2794" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /GO_process="GO:0009101 - glycoprotein biosynthetic process" /note="prepilin peptidase dependent protein A" /codon_start=1 /transl_table=11 /product="putative prepilin peptidase-dependent protein" /protein_id="NP_417303.1" /db_xref="GI:16130730" /db_xref="ASAP:ABE-0009266" /db_xref="UniProtKB/Swiss-Prot:P33554" /db_xref="EcoGene:EG12081" /db_xref="GeneID:945393" /translation="MKTQRGYTLIETLVAMLILVMLSASGLYGWQYWQQSQRLWQTAS QARDYLLYLREDANWHNRDHSISVIREGTLWCLVSSAAGANTCHGSSPLVFVPRWPEV EMSDLTPSLAFFGLRNTAWAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL" gene complement(2964361..2965155) /gene="thyA" /locus_tag="b2827" /gene_synonym="ECK2823; JW2795" /db_xref="EcoGene:EG11002" /db_xref="GeneID:949035" CDS complement(2964361..2965155) /gene="thyA" /locus_tag="b2827" /gene_synonym="ECK2823; JW2795" /EC_number="2.1.1.45" /function="enzyme; 2'-Deoxyribonucleotide metabolism" /experiment="N-terminus verified by Edman degradation: PMID 6308660" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /codon_start=1 /transl_table=11 /product="thymidylate synthetase" /protein_id="NP_417304.1" /db_xref="GI:16130731" /db_xref="ASAP:ABE-0009268" /db_xref="UniProtKB/Swiss-Prot:P0A884" /db_xref="EcoGene:EG11002" /db_xref="GeneID:949035" /translation="MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPL VTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWP TPDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHL QLSREPRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI" gene complement(2965162..2966037) /gene="lgt" /locus_tag="b2828" /gene_synonym="ECK2824; JW2796; umpA" /db_xref="EcoGene:EG12128" /db_xref="GeneID:947303" CDS complement(2965162..2966037) /gene="lgt" /locus_tag="b2828" /gene_synonym="ECK2824; JW2796; umpA" /EC_number="2.4.99.-" /function="enzyme; Macromolecule synthesis, modification: Phospholipids" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0008654 - phospholipid biosynthetic process; GO:0006464 - protein modification process" /note="phosphatidylglycerol-prolipoprotein diacylglyceryl transferase; a major membrane phospholipid" /codon_start=1 /transl_table=11 /product="phosphatidylglycerol-prolipoprotein diacylglyceryl transferase" /protein_id="NP_417305.1" /db_xref="GI:16130732" /db_xref="ASAP:ABE-0009270" /db_xref="UniProtKB/Swiss-Prot:P60955" /db_xref="EcoGene:EG12128" /db_xref="GeneID:947303" /translation="MTSSYLHFPEFDPVIFSIGPVALHWYGLMYLVGFIFAMWLATRR ANRPGSGWTKNEVENLLYAGFLGVFLGGRIGYVLFYNFPQFMADPLYLFRVWDGGMSF HGGLIGVIVVMIIFARRTKRSFFQVSDFIAPLIPFGLGAGRLGNFINGELWGRVDPNF PFAMLFPGSRTEDILLLQTNPQWQSIFDTYGVLPRHPSQLYELLLEGVVLFIILNLYI RKPRPMGAVSGLFLIGYGAFRIIVEFFRQPDAQFTGAWVQYISMGQILSIPMIVAGVI MMVWAYRRSPQQHVS" gene complement(2966188..2968434) /gene="ptsP" /locus_tag="b2829" /gene_synonym="ECK2825; JW2797; ygdF; ygdO" /db_xref="EcoGene:EG12188" /db_xref="GeneID:947301" CDS complement(2966188..2968434) /gene="ptsP" /locus_tag="b2829" /gene_synonym="ECK2825; JW2797; ygdF; ygdO" /EC_number="2.7.3.9" /function="enzyme; Transport of small molecules: Other" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins)" /codon_start=1 /transl_table=11 /product="PEP-protein phosphotransferase enzyme I; GAF domain containing protein" /protein_id="NP_417306.1" /db_xref="GI:16130733" /db_xref="ASAP:ABE-0009274" /db_xref="UniProtKB/Swiss-Prot:P37177" /db_xref="EcoGene:EG12188" /db_xref="GeneID:947301" /translation="MLTRLREIVEKVASAPRLNEALNILVTDICLAMDTEVCSVYLAD HDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRLAEPINLADAQKHPSFKYIPSV KEERFRAFLGVPIIQRRQLLGVLVVQQRELRQYDESEESFLVTLATQMAAILSQSQLT ALFGQYRQTRIRALPAAPGVAIAEGWQDATLPLMEQVYQASTLDPALERERLTGALEE AANEFRRYSKRFAAGAQKETAAIFDLYSHLLSDTRLRRELFAEVDKGSVAEWAVKTVI EKFAEQFAALSDNYLKERAGDLRALGQRLLFHLDDANQGPNAWPERFILVADELSATT LAELPQDRLVGVVVRDGAANSHAAIMVRALGIPTVMGADIQPSVLHRRTLIVDGYRGE LLVDPEPVLLQEYQRLISEEIELSRLAEDDVNLPAQLKSGERIKVMLNAGLSPEHEEK LGSRIDGIGLYRTEIPFMLQSGFPSEEEQVAQYQGMLQMFNDKPVTLRTLDVGADKQL PYMPISEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATGNLNILLPMVTSLDEVD EARRLIERAGREVEEMIGYEIPKPRIGIMLEVPSMVFMLPHLAKRVDFISVGTNDLTQ YILAVDRNNTRVANIYDSLHPAMLRALAMIAREAEIHGIDLRLCGEMAGDPMCVAILI GLGYRHLSMNGRSVARAKYLLRRIDYAEAENLAQRSLEAQLATEVRHQVAAFMERRGM GGLIRGGL" gene complement(2968447..2968977) /gene="rppH" /locus_tag="b2830" /gene_synonym="ECK2826; JW2798; nudH; ygdP" /db_xref="EcoGene:EG13091" /db_xref="GeneID:947300" CDS complement(2968447..2968977) /gene="rppH" /locus_tag="b2830" /gene_synonym="ECK2826; JW2798; nudH; ygdP" /EC_number="3.6.1.-" /function="putative factor; Not classified" /note="putative invasion protein" /codon_start=1 /transl_table=11 /product="RNA pyrophosphohydrolase" /protein_id="NP_417307.1" /db_xref="GI:16130734" /db_xref="ASAP:ABE-0009276" /db_xref="UniProtKB/Swiss-Prot:P0A776" /db_xref="EcoGene:EG13091" /db_xref="GeneID:947300" /translation="MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGE SAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLL QLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMSLQE NTPKPQNASAYRRKRG" gene 2969662..2970351 /gene="mutH" /locus_tag="b2831" /gene_synonym="ECK2827; JW2799; mutR; prv" /db_xref="EcoGene:EG10624" /db_xref="GeneID:947299" CDS 2969662..2970351 /gene="mutH" /locus_tag="b2831" /gene_synonym="ECK2827; JW2799; mutR; prv" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006281 - DNA repair" /note="methyl-directed mismatch repair" /codon_start=1 /transl_table=11 /product="methyl-directed mismatch repair protein" /protein_id="NP_417308.1" /db_xref="GI:16130735" /db_xref="ASAP:ABE-0009287" /db_xref="UniProtKB/Swiss-Prot:P06722" /db_xref="EcoGene:EG10624" /db_xref="GeneID:947299" /translation="MSQPRPLLSPPETEEQLLAQAQQLSGYTLGELAALVGLVTPENL KRDKGWIGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVAPLTG NSGVTWETSHVRHKLKRVLWIPVEGERSIPLAQRRVGSPLLWSPNEEEDRQLREDWEE LMDMIVLGQVERITARHGEYLQIRPKAANAKALTEAIGARGERILTLPRGFYLKKNFT SALLARHFLIQ" gene 2970420..2971133 /gene="ygdQ" /locus_tag="b2832" /gene_synonym="ECK2828; JW2800" /db_xref="EcoGene:EG13092" /db_xref="GeneID:947295" CDS 2970420..2971133 /gene="ygdQ" /locus_tag="b2832" /gene_synonym="ECK2828; JW2800" /function="putative transport; Not classified" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="UPF0053 family inner membrane protein" /protein_id="NP_417309.1" /db_xref="GI:16130736" /db_xref="ASAP:ABE-0009290" /db_xref="UniProtKB/Swiss-Prot:P67127" /db_xref="EcoGene:EG13092" /db_xref="GeneID:947295" /translation="MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQ RAHARRLGLAGAMVMRLALLASIAWVTRLTNPLFTIFSQEISARDLILLLGGLFLIWK ASKEIHESIEGEEEGLKTRVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAA VVIAVGVMMFAARSIGDFVERHPSVKMLALSFLILVGFTLILESFDIHVPKGYIYFAM FFSIAVESLNLIRNKKNPL" gene 2971271..2971489 /gene="ygdR" /locus_tag="b2833" /gene_synonym="ECK2829; JW2801" /db_xref="EcoGene:EG13076" /db_xref="GeneID:947304" CDS 2971271..2971489 /gene="ygdR" /locus_tag="b2833" /gene_synonym="ECK2829; JW2801" /codon_start=1 /transl_table=11 /product="DUF903 family verified lipoprotein" /protein_id="NP_417310.1" /db_xref="GI:16130737" /db_xref="ASAP:ABE-0009293" /db_xref="UniProtKB/Swiss-Prot:P65294" /db_xref="EcoGene:EG13076" /db_xref="GeneID:947304" /translation="MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDD DTGLVSYHDQQGNAMQINRDDVSQIIER" gene 2971597..2972637 /gene="tas" /locus_tag="b2834" /gene_synonym="ECK2830; JW2802; ygdS" /db_xref="EcoGene:EG13093" /db_xref="GeneID:947306" CDS 2971597..2972637 /gene="tas" /locus_tag="b2834" /gene_synonym="ECK2830; JW2802; ygdS" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative NADP(H)-dependent aldo-keto reductase" /protein_id="NP_417311.1" /db_xref="GI:16130738" /db_xref="ASAP:ABE-0009298" /db_xref="UniProtKB/Swiss-Prot:P0A9T4" /db_xref="EcoGene:EG13093" /db_xref="GeneID:947306" /translation="MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGI NLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPD QALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDT LDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVG LAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAA YVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDVLAEI EAVHQVYTYPAP" gene complement(2972669..2973862) /gene="lplT" /locus_tag="b2835" /gene_synonym="ECK2831; JW2803; ygeD" /db_xref="EcoGene:EG12455" /db_xref="GeneID:947317" CDS complement(2972669..2973862) /gene="lplT" /locus_tag="b2835" /gene_synonym="ECK2831; JW2803; ygeD" /function="orf; Drug/analog sensitivity" /GO_process="GO:0042493 - response to drug" /note="putative resistance proteins" /codon_start=1 /transl_table=11 /product="lysophospholipid transporter" /protein_id="NP_417312.1" /db_xref="GI:16130739" /db_xref="ASAP:ABE-0009300" /db_xref="UniProtKB/Swiss-Prot:P39196" /db_xref="EcoGene:EG12455" /db_xref="GeneID:947317" /translation="MSESVHTNTSLWSKGMKAVIVAQFLSAFGDNALLFATLALLKAQ FYPEWSQPILQMVFVGAYILFAPFVGQVADSFAKGRVMMFANGLKLLGAASICFGINP FLGYTLVGVGAAAYSPAKYGILGELTTGSKLVKANGLMEASTIAAILLGSVAGGVLAD WHVLVALAACALAYGGAVVANIYIPKLAAARPGQSWNLINMTRSFLNACTSLWRNGET RFSLVGTSLFWGAGVTLRFLLVLWVPVALGITDNATPTYLNAMVAIGIVVGAGAAAKL VTLETVSRCMPAGILIGVVVLIFSLQHELLPAYALLMLIGVMGGFFVVPLNALLQERG KKSVGAGNAIAVQNLGENSAMLLMLGIYSLAVMIGIPVVPIGIGFGALFALAITALWI WQRRH" gene complement(2973855..2976014) /gene="aas" /locus_tag="b2836" /gene_synonym="ECK2832; JW2804" /db_xref="EcoGene:EG11679" /db_xref="GeneID:947315" CDS complement(2973855..2976014) /gene="aas" /locus_tag="b2836" /gene_synonym="ECK2832; JW2804" /EC_number="2.3.1.40" /EC_number="6.2.1.20" /function="enzyme; Fatty acid and phosphatidic acid biosynthesis" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006464 - protein modification process" /note="2-acyl-glycerophospho-ethanolamine acyltransferase; acyl-acyl-carrier protein synthetase" /codon_start=1 /transl_table=11 /product="fused 2-acylglycerophospho-ethanolamine acyl transferase/acyl-acyl carrier protein synthetase" /protein_id="NP_417313.1" /db_xref="GI:16130740" /db_xref="ASAP:ABE-0009302" /db_xref="UniProtKB/Swiss-Prot:P31119" /db_xref="EcoGene:EG11679" /db_xref="GeneID:947315" /translation="MLFSFFRNLCRVLYRVRVTGDTQALKGERVLITPNHVSFIDGIL LGLFLPVRPVFAVYTSISQQWYMRWLKSFIDFVPLDPTQPMAIKHLVRLVEQGRPVVI FPEGRITTTGSLMKIYDGAGFVAAKSGATVIPVRIEGAELTHFSRLKGLVKRRLFPQI TLHILPPTQVAMPDAPRARDRRKIAGEMLHQIMMEARMAVRPRETLYESLLSAMYRFG AGKKCVEDVNFTPDSYRKLLTKTLFVGRILEKYSVEGERIGLMLPNAGISAAVIFGAI ARRRMPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLE DLKADVTTADKVWIFAHLLMPRLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILA NVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPEL VYDRSCTVLFGTSTFLGHYARFANPYDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL EGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVPGIEEGGRLQLKGPNIMNG YLRVEKPGVLEVPTAENVRGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMV SLEMVEQLALGVSPDKVHATAIKSDASKGEALVLFTTDNELTRDKLQQYAREHGVPEL AVPRDIRYLKQMPLLGSGKPDFVTLKSWVDEAEQHDE" gene complement(2976102..2976189) /gene="omrA" /locus_tag="b4444" /gene_synonym="ECK2833; JWR0248; PAIR2a; psrA12; rygA; sraE; t59" /db_xref="EcoGene:EG31157" /db_xref="GeneID:2847746" ncRNA complement(2976102..2976189) /ncRNA_class="antisense_RNA" /gene="omrA" /locus_tag="b4444" /gene_synonym="ECK2833; JWR0248; PAIR2a; psrA12; rygA; sraE; t59" /product="sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq-dependent" /note="identified in a large scale screen" /db_xref="ASAP:ABE-0047264" /db_xref="EcoGene:EG31157" /db_xref="GeneID:2847746" gene complement(2976304..2976385) /gene="omrB" /locus_tag="b4445" /gene_synonym="ECK2834; JWR0249; PAIR2b; rygB; t59" /db_xref="EcoGene:EG31158" /db_xref="GeneID:2847747" ncRNA complement(2976304..2976385) /ncRNA_class="antisense_RNA" /gene="omrB" /locus_tag="b4445" /gene_synonym="ECK2834; JWR0249; PAIR2b; rygB; t59" /product="sRNA antisense regulator downregulates OM proteins and curli; positively regulated by OmpR/EnvZ, Hfq-dependent" /note="identified in a large scale screen" /db_xref="ASAP:ABE-0047265" /db_xref="EcoGene:EG31158" /db_xref="GeneID:2847747" gene 2976599..2977630 /gene="galR" /locus_tag="b2837" /gene_synonym="ECK2835; JW2805" /db_xref="EcoGene:EG10364" /db_xref="GeneID:947314" CDS 2976599..2977630 /gene="galR" /locus_tag="b2837" /gene_synonym="ECK2835; JW2805" /function="regulator; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006350 - transcription" /note="repressor of galETK operon" /codon_start=1 /transl_table=11 /product="galactose-inducible d-galactose regulon transcriptional repressor; autorepressor" /protein_id="NP_417314.1" /db_xref="GI:16130741" /db_xref="ASAP:ABE-0009307" /db_xref="UniProtKB/Swiss-Prot:P03024" /db_xref="EcoGene:EG10364" /db_xref="GeneID:947314" /translation="MATIKDVARLAGVSVATVSRVINNSPKASEASRLAVHSAMESLS YHPNANARALAQQTTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQ KERQAIEQLIRHRCAALVVHAKMIPDADLASLMKQMPGMVLINRILPGFENRCIALDD RYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQGYYDALAESGIAANDRLVTFGE PDESGGEQAMTELLGRGRNFTAVACYNDSMAAGAMGVLNDNGIDVPGEISLIGFDDVL VSRYVRPRLTTVRYPIVTMATQAAELALALADNRPLPEITNVFSPTLVRRHSVSTPSL EASHHATSD" gene complement(2977637..2978899) /gene="lysA" /locus_tag="b2838" /gene_synonym="ECK2836; JW2806" /db_xref="EcoGene:EG10549" /db_xref="GeneID:947313" CDS complement(2977637..2978899) /gene="lysA" /locus_tag="b2838" /gene_synonym="ECK2836; JW2806" /EC_number="4.1.1.20" /function="enzyme; Amino acid biosynthesis: Lysine" /GO_process="GO:0009089 - lysine biosynthetic process via diaminopimelate" /note="diaminopimelate decarboxylase" /codon_start=1 /transl_table=11 /product="diaminopimelate decarboxylase, PLP-binding" /protein_id="NP_417315.1" /db_xref="GI:16130742" /db_xref="ASAP:ABE-0009309" /db_xref="UniProtKB/Swiss-Prot:P00861" /db_xref="EcoGene:EG10549" /db_xref="GeneID:947313" /translation="MPHSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALK QFDVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVFTAD VIDQATLERVSELQIPVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGE NSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIGSGVDYAHLEQVCGAMVRQVIEFGQD LQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQ SGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISALAADGRSLEHAPTVE TVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLL PEVLFDNGQARLIRRRQTIEELLALELL" gene 2979021..2979956 /gene="lysR" /locus_tag="b2839" /gene_synonym="ECK2837; JW2807" /db_xref="EcoGene:EG10551" /db_xref="GeneID:947311" CDS 2979021..2979956 /gene="lysR" /locus_tag="b2839" /gene_synonym="ECK2837; JW2807" /function="regulator; Amino acid biosynthesis: Lysine" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0009089 - lysine biosynthetic process via diaminopimelate; GO:0006350 - transcription" /note="positive regulator for lys" /codon_start=1 /transl_table=11 /product="transcriptional activator of lysA; autorepressor" /protein_id="NP_417316.1" /db_xref="GI:16130743" /db_xref="ASAP:ABE-0009313" /db_xref="UniProtKB/Swiss-Prot:P03030" /db_xref="EcoGene:EG10551" /db_xref="GeneID:947311" /translation="MAAVNLRHIEIFHAVMTAGSLTEAAHLLHTSQPTVSRELARFEK VIGLKLFERVRGRLHPTVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIACLP VFSQSFLPQLLQPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTETLHTPAGTER TELLSLDEVCVLPPGHPLAVKKVLTPDDFQGENYISLSRTDSYRQLLDQLFTEHQVKR RMIVETHSAASVCAMVRAGVGISVVNPLTALDYAASGLVVRRFSIAVPFTVSLIRPLH RPSSALVQAFSGHLQAGLPKLVTSLDAILSSATTA" gene complement(2979943..2980635) /gene="ygeA" /locus_tag="b2840" /gene_synonym="ECK2838; JW2808" /db_xref="EcoGene:EG11157" /db_xref="GeneID:947348" CDS complement(2979943..2980635) /gene="ygeA" /locus_tag="b2840" /gene_synonym="ECK2838; JW2808" /function="putative transport; Drug/analog sensitivity" /GO_process="GO:0042493 - response to drug" /note="putative resistance proteins" /codon_start=1 /transl_table=11 /product="Asp/Glu_racemase family protein" /protein_id="NP_417317.1" /db_xref="GI:16130744" /db_xref="ASAP:ABE-0009315" /db_xref="UniProtKB/Swiss-Prot:P03813" /db_xref="EcoGene:EG11157" /db_xref="GeneID:947348" /translation="MKTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQVLLHSVD FHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCTLPFL HIADATGRAITGAGMTRVALLGTRYTMEQDFYRGRLTEQFSINCLIPEADERAKINQI IFEELCLGQFTEASRAYCAQVIARLAEQGAQGVIFGCTEIGLLVPEERSVLPVFDTAA IHAEDAVAFMLS" repeat_region 2980733..2980755 /note="REP208 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(2980764..2982182) /gene="araE" /locus_tag="b2841" /gene_synonym="ECK2839; JW2809" /db_xref="EcoGene:EG10056" /db_xref="GeneID:947341" CDS complement(2980764..2982182) /gene="araE" /locus_tag="b2841" /gene_synonym="ECK2839; JW2809" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0015524 - L-arabinose/beta-D-thiogalactopyranoside:hydrogen antiporter activity" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="low-affinity L-arabinose transport system proton symport protein" /codon_start=1 /transl_table=11 /product="arabinose transporter" /protein_id="NP_417318.1" /db_xref="GI:16130745" /db_xref="ASAP:ABE-0009319" /db_xref="UniProtKB/Swiss-Prot:P0AE24" /db_xref="EcoGene:EG10056" /db_xref="GeneID:947341" /translation="MVTINTESALTPRSLRDTRRMNMFVSVAAAVAGLLFGLDIGVIA GALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLG SIGSAFATSVEMLIAARVVLGIAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLG IVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPNSPRWLAEKGRHIEAEEVL RMLRDTSEKAREELNEIRESLKLKQGGWALFKINRNVRRAVFLGMLLQAMQQFTGMNI IMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVM ALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKC RDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNIAFVGITFWLIPETK NVTLEHIERKLMAGEKLRNIGV" gene complement(2982497..2983258) /gene="kduD" /locus_tag="b2842" /gene_synonym="ECK2840; JW2810; ygeC; yqeD" /db_xref="EcoGene:EG12361" /db_xref="GeneID:947323" CDS complement(2982497..2983258) /gene="kduD" /locus_tag="b2842" /gene_synonym="ECK2840; JW2810; ygeC; yqeD" /EC_number="1.1.1.127" /EC_number="1.1.1.149" /function="enzyme; Degradation of small molecules: Carbon compounds" /codon_start=1 /transl_table=11 /product="2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase; KDG oxidoreductase; 20-ketosteroid reductase" /protein_id="NP_417319.1" /db_xref="GI:16130746" /db_xref="ASAP:ABE-0009330" /db_xref="UniProtKB/Swiss-Prot:P37769" /db_xref="EcoGene:EG12361" /db_xref="GeneID:947323" /translation="MILSAFSLEGKVAVVTGCDTGLGQGMALGLAQAGCDIVGINIVE PTETIEQVTALGRRFLSLTADLRKIDGIPALLDRAVAEFGHIDILVNNAGLIRREDAL EFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTA SKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRW GLPSDLMGPIVFLASSASDYVNGYTIAVDGGWLAR" gene complement(2983288..2984124) /gene="kduI" /locus_tag="b2843" /gene_synonym="ECK2841; JW2811; yqeE" /db_xref="EcoGene:EG13096" /db_xref="GeneID:947319" CDS complement(2983288..2984124) /gene="kduI" /locus_tag="b2843" /gene_synonym="ECK2841; JW2811; yqeE" /function="enzyme; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 9761873" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="homolog of pectin degrading enzyme 5-keto 4-deoxyuronate isomerase" /codon_start=1 /transl_table=11 /product="hexuronate isomerase" /protein_id="NP_417320.1" /db_xref="GI:16130747" /db_xref="ASAP:ABE-0009332" /db_xref="UniProtKB/Swiss-Prot:Q46938" /db_xref="EcoGene:EG13096" /db_xref="GeneID:947319" /translation="MDVRQSIHSAHAKTLDTQGLRNEFLVEKVFVADEYTMVYSHIDR IIVGGIMPITKTVSVGGEVGKQLGVSYFLERRELGVINIGGAGTITVDGQCYEIGHRD ALYVGKGAKEVVFASIDTGTPAKFYYNCAPAHTTYPTKKVTPDEVSPVTLGDNLTSNR RTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDACVFH MMGQPQETRHIVMHNEQAVISPSWSIHSGVGTKAYTFIWGMVGENQVFDDMDHVAVKD LR" gene complement(2984411..2985592) /gene="yqeF" /locus_tag="b2844" /gene_synonym="ECK2842; JW5453" /db_xref="EcoGene:EG13097" /db_xref="GeneID:947324" CDS complement(2984411..2985592) /gene="yqeF" /locus_tag="b2844" /gene_synonym="ECK2842; JW5453" /function="enzyme; Not classified" /note="putative acyltransferase" /codon_start=1 /transl_table=11 /product="short chain acyltransferase" /protein_id="NP_417321.2" /db_xref="GI:90111494" /db_xref="ASAP:ABE-0009335" /db_xref="UniProtKB/Swiss-Prot:Q46939" /db_xref="EcoGene:EG13097" /db_xref="GeneID:947324" /translation="MKDVVIVGALRTPIGCFRGALAGHSAVELGSLVVKALIERTGVP AYAVDEVILGQVLTAGAGQNPARQSAIKGGLPNSVSAITINDVCGSGLKALHLATQAI QCGEADIVIAGGQENMSRAPHVLTDSRTGAQLGNSQLVDSLVHDGLWDAFNDYHIGVT AENLAREYGISRQLQDAYALSSQQKARAAIDAGRFKDEIVPVMTQSNGQTLVVDTDEQ PRTDASAEGLARLNPSFDSLGSVTAGNASSINDGAAAVMMMSEAKARALNLPVLARIR AFASVGVDPALMGIAPVYATRRCLERVGWQLAEVDLIEANEAFAAQALSVGKMLEWDE RRVNVNGGAIALGHPIGASGCRILVSLVHEMVKRNARKGLATLCIGGGQGVALTIERD E" gene 2985847..2987076 /gene="yqeG" /locus_tag="b2845" /gene_synonym="ECK2843; JW2813" /db_xref="EcoGene:EG13098" /db_xref="GeneID:945028" CDS 2985847..2987076 /gene="yqeG" /locus_tag="b2845" /gene_synonym="ECK2843; JW2813" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transporter protein" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="NP_417322.1" /db_xref="GI:16130749" /db_xref="ASAP:ABE-0009345" /db_xref="UniProtKB/Swiss-Prot:P63340" /db_xref="EcoGene:EG13098" /db_xref="GeneID:945028" /translation="MSNIWSKEETLWSFALYGTAVGAGTLFLPIQLGSAGAVVLFITA LVAWPLTYWPHKALCQFILSSKTSAGEGITGAVTHYYGKKIGNLITTLYFIAFFVVVL IYAVAITNSLTEQLAKHMVIDLRIRMLVSLGVVLILNLIFLMGRHATIRVMGFLVFPL IAYFLFLSIYLVGSWQPDLLTTQVEFNQNTLHQIWISIPVMVFAFSHTPIISTFAIDR REKYGEHAMDKCKKIMKVAYLIICISVLFFVFSCLLSIPPSYIEAAKEEGVTILSALS MLPNAPAWLSISGIIVAVVAMSKSFLGTYFGVIEGATEVVKTTLQQVGVKKSRAFNRA LSIMLVSLITFIVCCINPNAISMIYAISGPLIAMILFIMPTLSTYLIPALKPWRSIGN LITLIVGILCVSVMFFS" gene 2987536..2988168 /gene="yqeH" /locus_tag="b2846" /gene_synonym="ECK2844; JW5454" /db_xref="EcoGene:EG13099" /db_xref="GeneID:945263" CDS 2987536..2988168 /gene="yqeH" /locus_tag="b2846" /gene_synonym="ECK2844; JW5454" /codon_start=1 /transl_table=11 /product="putative LuxR family transcriptional regulator" /protein_id="NP_417323.2" /db_xref="GI:90111495" /db_xref="ASAP:ABE-0009349" /db_xref="UniProtKB/Swiss-Prot:Q46941" /db_xref="EcoGene:EG13099" /db_xref="GeneID:945263" /translation="MGLCSRYKSLTCNSCSMHCQIMPEESPRLQYCANSCFCMWPEES SYFNRGVVEGILTKNHNARLSGYIFVDFSVSFLRLFLEKDWIDYLASTDMGIVLVSDR NMQSLANYWRKHNSAISAVIYNDDGLDVANEKIRQLFIGRYLSFTGGNTLTQMEFTIM GYMVSGYNPYQIAEVLDMDIRSIYAYKQRIEKRMGGKINELFIRSHSVQH" gene 2988502..2989311 /gene="yqeI" /locus_tag="b2847" /gene_synonym="ECK2845; JW2815" /db_xref="EcoGene:EG13100" /db_xref="GeneID:947327" CDS 2988502..2989311 /gene="yqeI" /locus_tag="b2847" /gene_synonym="ECK2845; JW2815" /function="putative transport; Not classified" /note="putative sensory transducer" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_417324.1" /db_xref="GI:16130751" /db_xref="ASAP:ABE-0009352" /db_xref="UniProtKB/Swiss-Prot:Q46942" /db_xref="EcoGene:EG13100" /db_xref="GeneID:947327" /translation="MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEA FPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFK IHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIML SAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRIL DSGINCKKHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSYREVNRD" gene 2989304..2989786 /gene="yqeJ" /locus_tag="b2848" /gene_synonym="ECK2846; JW5455" /db_xref="EcoGene:EG13101" /db_xref="GeneID:947328" CDS 2989304..2989786 /gene="yqeJ" /locus_tag="b2848" /gene_synonym="ECK2846; JW5455" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_417325.4" /db_xref="GI:90111496" /db_xref="ASAP:ABE-0009354" /db_xref="UniProtKB/Swiss-Prot:Q46943" /db_xref="EcoGene:EG13101" /db_xref="GeneID:947328" /translation="MIDYKKNLLFILVFISGFILFTVYSYTAEKMIYNETCTANWVIF NDQGRANLTIDFMYNKKNKTGTVALSGTWQQGNRESKSIRRNIEYTWIENYDTAHLTS KKVNKFEIMDQVDDDRLAQLIPDFYVFPEKSVSYNILKQGKHAFILSIGNRAIMHCAR " gene complement(2989819..2989899) /gene="yqeL" /locus_tag="b4683" /gene_synonym="ECK4498" /db_xref="EcoGene:EG14488" /db_xref="GeneID:7751637" CDS complement(2989819..2989899) /gene="yqeL" /locus_tag="b4683" /gene_synonym="ECK4498" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_002791253.1" /db_xref="GI:226524744" /db_xref="UniProtKB/Swiss-Prot:C1P613" /db_xref="EcoGene:EG14488" /db_xref="GeneID:7751637" /translation="MKDVDQIFDALDCHILREYLILLFYD" gene complement(2989935..2990360) /gene="yqeK" /locus_tag="b2849" /gene_synonym="ECK2847; JW2817" /db_xref="EcoGene:EG13274" /db_xref="GeneID:947329" CDS complement(2989935..2990360) /gene="yqeK" /locus_tag="b2849" /gene_synonym="ECK2847; JW2817" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_417326.2" /db_xref="GI:90111497" /db_xref="ASAP:ABE-0009356" /db_xref="UniProtKB/Swiss-Prot:P77136" /db_xref="EcoGene:EG13274" /db_xref="GeneID:947329" /translation="MDIEFSQIHEMVYMHDIVNSDSKKKPRIPLKKFLNAENVLTQTT SWTLNSRYVNVNSVNKVNVKSKVKNSYISRSVNDEFSLTDDEINSFKETLVLSSIDSL SKLVLNNPLSVLFTSTVRRNNNRAKMNVEFDSWICTRCC" gene 2990554..2991043 /gene="ygeF" /locus_tag="b2850" /gene_synonym="ECK2848; JW2818" /pseudo /db_xref="EcoGene:EG13036" /db_xref="GeneID:946823" CDS join(2990554..2990949,2990948..2991043) /gene="ygeF" /locus_tag="b2850" /gene_synonym="ECK2848; JW2818" /note="pseudogene" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0009361" /db_xref="UniProtKB/Swiss-Prot:Q46786" /db_xref="EcoGene:EG13036" /db_xref="GeneID:946823" gene 2991268..2991759 /gene="ygeG" /locus_tag="b2851" /gene_synonym="ECK2849; JW2819" /db_xref="EcoGene:EG13037" /db_xref="GeneID:946986" CDS 2991268..2991759 /gene="ygeG" /locus_tag="b2851" /gene_synonym="ECK2849; JW2819" /codon_start=1 /transl_table=11 /product="SycD-like chaperone family TPR-repeat-containing protein" /protein_id="NP_417328.1" /db_xref="GI:16130755" /db_xref="ASAP:ABE-0009364" /db_xref="UniProtKB/Swiss-Prot:Q46787" /db_xref="EcoGene:EG13037" /db_xref="GeneID:946986" /translation="MSTETIEIFNNSDEWANQLKHALSKGENLALLHGLTPDILDRIY AYAFDYHEKGNITDAEIYYKFLCIYAFENHEYLKDFASVCQPKKKYQQAYDLYKLSYN YFPYDDYSVIYRMGQCQIGAKNIDNAMQCFYHIINNCEDDSVKSKAQAYIELLNDNSE DNG" gene 2992094..2993470 /gene="ygeH" /locus_tag="b2852" /gene_synonym="ECK2850; JW2820" /db_xref="EcoGene:EG13038" /db_xref="GeneID:946265" CDS 2992094..2993470 /gene="ygeH" /locus_tag="b2852" /gene_synonym="ECK2850; JW2820" /function="putative factor; Not classified" /note="putative invasion protein" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_417329.1" /db_xref="GI:16130756" /db_xref="ASAP:ABE-0009368" /db_xref="UniProtKB/Swiss-Prot:P76639" /db_xref="EcoGene:EG13038" /db_xref="GeneID:946265" /translation="MDLENKFSYHFLEGLTLTEDGILTQGNEQVYIPQKELGVLIVLL ESAGHVVLKDMIIESVWKNIIVSDESLTRCIYSLRCIFEKIGYDRCIETIYRKGYRFS GQVFKTKINEDNTSDYSIAIFPFTTSLNTLDPLILNQELVQIISNKKIDGLYTYPMAA TNFCNDHISQNSFLSRFKPDYFVTGRINQNNAVNTLYIELIDAKNLFLIASNHLPVDE LHNTSQFIIDNILQTVHKPERSVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYR AMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEAR ICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETESESHRVIIDNILKLK QLTRICMR" gene 2993638..2993856 /gene="ygeI" /locus_tag="b2853" /gene_synonym="ECK2851; JW5456" /db_xref="EcoGene:EG13039" /db_xref="GeneID:947336" CDS 2993638..2993856 /gene="ygeI" /locus_tag="b2853" /gene_synonym="ECK2851; JW5456" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_417330.1" /db_xref="GI:16130757" /db_xref="ASAP:ABE-0009374" /db_xref="UniProtKB/Swiss-Prot:Q46789" /db_xref="EcoGene:EG13039" /db_xref="GeneID:947336" /translation="MTNPIGINNLSQSSNIANATGDEVVSLDKHINTSATDTDQIQAF IVSTWMAPFQNDMYSEDNPISPYYKIEW" gene 2993939..2994441 /gene="pbl" /locus_tag="b2854" /gene_synonym="ECK2852; JW5457; ygeJ" /pseudo /db_xref="EcoGene:EG13040" /db_xref="GeneID:947338" CDS join(2993939..2994382,2994382..2994441) /gene="pbl" /locus_tag="b2854" /gene_synonym="ECK2852; JW5457; ygeJ" /note="pseudogene, peptidoglycan-binding enzyme family" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0009377" /db_xref="UniProtKB/Swiss-Prot:Q46790" /db_xref="EcoGene:EG13040" /db_xref="GeneID:947338" gene complement(2994460..2995092) /gene="ygeK" /locus_tag="b2856" /gene_synonym="ECK2853; JW5458; ygeL" /pseudo /db_xref="EcoGene:EG13041" /db_xref="GeneID:947332" CDS complement(2994460..2995092) /gene="ygeK" /locus_tag="b2856" /gene_synonym="ECK2853; JW5458; ygeL" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="pseudogene, response regulator family, part of T3SS PAI ETT2 remnant; putative 2-component transcriptional regulator" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0009379" /db_xref="ASAP:ABE-0009381" /db_xref="UniProtKB/Swiss-Prot:Q46791" /db_xref="EcoGene:EG13041" /db_xref="GeneID:947332" gene complement(2995314..2996020) /gene="ygeN" /locus_tag="b2858" /gene_synonym="ECK2855; JW5459; ygeM" /pseudo /db_xref="EcoGene:EG13044" /db_xref="GeneID:2847705" CDS complement(join(2995314..2995760,2995760..2996020)) /gene="ygeN" /locus_tag="b2858" /gene_synonym="ECK2855; JW5459; ygeM" /note="pseudogene, orgB family, part of T3SS PAI ETT2 remnant" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0009385" /db_xref="ASAP:ABE-0009387" /db_xref="UniProtKB/Swiss-Prot:Q46793" /db_xref="EcoGene:EG13044" /db_xref="GeneID:2847705" gene complement(2995962..2996360) /gene="ygeO" /locus_tag="b2859" /gene_synonym="ECK2857; JW5846" /pseudo /db_xref="EcoGene:EG13045" /db_xref="GeneID:947325" CDS complement(2995962..2996360) /gene="ygeO" /locus_tag="b2859" /gene_synonym="ECK2857; JW5846" /note="pseudogene, orgA family, part of T3SS PAI ETT2 remnant" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0009390" /db_xref="UniProtKB/Swiss-Prot:Q46795" /db_xref="EcoGene:EG13045" /db_xref="GeneID:947325" mobile_element complement(2996361..2997691) /mobile_element_type="insertion sequence:IS2H" gene complement(2996372..2997277) /gene="insD1" /locus_tag="b2860" /gene_synonym="ECK0358" /db_xref="EcoGene:EG40004" /db_xref="GeneID:947346" CDS complement(2996372..2997277) /gene="insD1" /locus_tag="b2860" /gene_synonym="ECK0358" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_417337.1" /db_xref="GI:16130763" /db_xref="ASAP:ABE-0009395" /db_xref="UniProtKB/Swiss-Prot:P0CF56" /db_xref="EcoGene:EG40004" /db_xref="GeneID:947346" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" gene complement(2997235..2997600) /gene="insC1" /locus_tag="b2861" /gene_synonym="ECK0357" /db_xref="EcoGene:EG40003" /db_xref="GeneID:947347" CDS complement(2997235..2997600) /gene="insC1" /locus_tag="b2861" /gene_synonym="ECK0357" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_417338.3" /db_xref="GI:145698306" /db_xref="ASAP:ABE-0009397" /db_xref="UniProtKB/Swiss-Prot:P0CF43" /db_xref="EcoGene:EG40003" /db_xref="GeneID:947347" /translation="MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAAS QLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVE YGRAKKWIAHAPLLPGDGE" gene complement(2997692..2998828) /gene="ygeQ" /locus_tag="b2863" /gene_synonym="ECK2858; JW2831; ygeP" /pseudo /db_xref="EcoGene:EG13047" /db_xref="GeneID:947344" CDS complement(2997692..2998828) /gene="ygeQ" /locus_tag="b2863" /gene_synonym="ECK2858; JW2831; ygeP" /note="pseudogene, glycosyl hydrolase family 15, part of T3SS PAI ETT2 remnant" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0009399" /db_xref="ASAP:ABE-0009401" /db_xref="UniProtKB/Swiss-Prot:Q46797" /db_xref="EcoGene:EG13047" /db_xref="GeneID:947344" gene complement(2998984..2999057) /gene="glyU" /locus_tag="b2864" /gene_synonym="ECK2860; JWR0066; suA36; sufD; sumB; supT" /db_xref="EcoGene:EG30037" /db_xref="GeneID:947343" tRNA complement(2998984..2999057) /gene="glyU" /locus_tag="b2864" /gene_synonym="ECK2860; JWR0066; suA36; sufD; sumB; supT" /product="tRNA-Gly" /note="anticodon: CCC" /db_xref="ASAP:ABE-0009405" /db_xref="EcoGene:EG30037" /db_xref="GeneID:947343" gene complement(2999136..2999891) /gene="ygeR" /locus_tag="b2865" /gene_synonym="ECK2861; JW2833" /db_xref="EcoGene:EG13048" /db_xref="GeneID:947352" CDS complement(2999136..2999891) /gene="ygeR" /locus_tag="b2865" /gene_synonym="ECK2861; JW2833" /function="putative structure; Not classified" /GO_component="GO:0009279 - cell outer membrane" /note="putative lipoprotein" /codon_start=1 /transl_table=11 /product="LysM domain-containing M23 family putative peptidase; septation lipoprotein" /protein_id="NP_417341.4" /db_xref="GI:90111503" /db_xref="ASAP:ABE-0009407" /db_xref="UniProtKB/Swiss-Prot:Q46798" /db_xref="EcoGene:EG13048" /db_xref="GeneID:947352" /translation="MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTV KRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQKLKLGGAKSSSITRKSTAKSTT KTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYA AGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGST DAASVRLHFQIRYRATAIDPLRYLPPQGSKPKC" gene 3000345..3002603 /gene="xdhA" /locus_tag="b2866" /gene_synonym="ECK2862; JW5462; ygeS" /db_xref="EcoGene:EG13049" /db_xref="GeneID:947116" CDS 3000345..3002603 /gene="xdhA" /locus_tag="b2866" /gene_synonym="ECK2862; JW5462; ygeS" /codon_start=1 /transl_table=11 /product="xanthine dehydrogenase, molybdenum binding subunit" /protein_id="NP_417342.1" /db_xref="GI:16130768" /db_xref="ASAP:ABE-0009413" /db_xref="UniProtKB/Swiss-Prot:Q46799" /db_xref="EcoGene:EG13049" /db_xref="GeneID:947116" /translation="MRVDAIAKVTGRARYTDDYVMAGMCYAKYVRSPIAHGYAVSIND EQARSLPGVLAIFTWEDVPDIPFATAGHAWTLDENKRDTADRALLTRHVRHHGDAVAI VVARDELTAEKAAQLVSIEWQELPVITTPEAALAEDAAPIHNGGNLLKQSTMSTGNVQ QTIDAADYQVQGHYQTPVIQHCHMESVTSLAWMEDDSRITIVSSTQIPHIVRRVVGQA LDIPWSCVRVIKPFVGGGFGNKQDVLEEPMAAFLTSKLGGIPVKVSLSREECFLATRT RHAFTIDGQMGVNRDGTLKGYSLDVLSNTGAYASHGHSIASAGGNKVAYLYPRCAYAY SSKTCYTNLPSAGAMRGYGAPQVVFAVESMLDDAATALGIDPVEIRLRNAAREGDANP LTGKRIYSAGLPECLEKGRKIFEWEKRRAECQNQQGNLRRGVGVACFSYTSNTWPVGV EIAGARLLMNQDGTINVQSGATEIGQGADTVFSQMVAETVGVPVSDVRVISTQDTDVT PFDPGAFASRQSYVAAPALRSAALLLKEKIIAHAAVMLHQSAMNLTLIKGHIVLVERP EEPLMSLKDLAMDAFYHPERGGQLSAESSIKTTTNPPAFGCTFVDLTVDIALCKVTIN RILNVHDSGHILNPLLAEGQVHGGMGMGIGWALFEEMIIDAKSGVVRNPNLLDYKMPT MPDLPQLESAFVEINEPQSAYGHKSLGEPPIIPVAAAIRNAVKMATGVAINTLPLTPK RLYEEFHLAGLI" gene 3002614..3003492 /gene="xdhB" /locus_tag="b2867" /gene_synonym="ECK2863; JW2835; ygeT" /db_xref="EcoGene:EG13050" /db_xref="GeneID:947205" CDS 3002614..3003492 /gene="xdhB" /locus_tag="b2867" /gene_synonym="ECK2863; JW2835; ygeT" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="xanthine dehydrogenase, FAD-binding subunit" /protein_id="NP_417343.1" /db_xref="GI:16130769" /db_xref="ASAP:ABE-0009416" /db_xref="UniProtKB/Swiss-Prot:Q46800" /db_xref="EcoGene:EG13050" /db_xref="GeneID:947205" /translation="MFDFASYHRAATLADAINLLADNPQAKLLAGGTDVLIQLHHHND RYRHIVDIHNLAELRGITLAEDGSLRIGSATTFTQLIEDPITQRHLPALCAAATSIAG PQIRNVATYGGNICNGATSADSATPTLIYDAKLEIHSPRGVRFVPINGFHTGPGKVSL EHDEILVAFHFPPQPKEHAGSAHFKYAMRDAMDISTIGCAAHCRLDNGNFSELRLAFG VAAPTPIRCQHAEQTAQNAPLNLQTLEAISESVLQDVAPRSSWRASKEFRLHLIQTMT KKVISEAVAAAGGKLQ" gene 3003489..3003968 /gene="xdhC" /locus_tag="b2868" /gene_synonym="ECK2864; JW2836; ygeU" /db_xref="EcoGene:EG13051" /db_xref="GeneID:945148" CDS 3003489..3003968 /gene="xdhC" /locus_tag="b2868" /gene_synonym="ECK2864; JW2836; ygeU" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="xanthine dehydrogenase, Fe-S binding subunit" /protein_id="NP_417344.1" /db_xref="GI:16130770" /db_xref="ASAP:ABE-0009418" /db_xref="UniProtKB/Swiss-Prot:Q46801" /db_xref="EcoGene:EG13051" /db_xref="GeneID:945148" /translation="MNHSETITIECTINGMPFQLHAAPGTPLSELLREQGLLSVKQGC CVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAKGGKLSHVQQAYAKSGAVQ CGFCTPGLIMATTAMLAKPREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLDCEKTK" gene complement(3004008..3005786) /gene="ygeV" /locus_tag="b2869" /gene_synonym="ECK2865; JW2837" /db_xref="EcoGene:EG13052" /db_xref="GeneID:947320" CDS complement(3004008..3005786) /gene="ygeV" /locus_tag="b2869" /gene_synonym="ECK2865; JW2837" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator" /codon_start=1 /transl_table=11 /product="putative sigma-54-interacting transcriptional activator" /protein_id="NP_417345.1" /db_xref="GI:16130771" /db_xref="ASAP:ABE-0009420" /db_xref="UniProtKB/Swiss-Prot:Q46802" /db_xref="EcoGene:EG13052" /db_xref="GeneID:947320" /translation="MELATTQSVLMQIQPTIQRFARMLASVLQLEVEIVDENLCRVAG TGAYGKFLGRQLSGNSRLLRHVLETKTEKVVTQSRFDPLCEGCDSKENCREKAFLGTP VILQDRCVGVISLIAVTHEQQEHISDNLREFSDYVRHISTIFVSKLLEDQGPGDNISK IFATMIDNMDQGVLVVDDENRVQFVNQTALKTLGVVQNNIIGKPIRFRPLTFESNFTH GHMQHIVSWDDKSELIIGQLHNIQGRQLFLMAFHQSHTSFSVANAPDEPHIEQLVGEC RVMRQLKRLISRIAPSPSSVMVVGESGTGKEVVARAIHKLSGRRNKPFIAINCAAIPE QLLESELFGYVKGAFTGASANGKTGLIQAANTGTLFLDEIGDMPLMLQAKLLRAIEAR EILPIGASSPIQVDIRIISATNQNLAQFIAEGKFREDLFYRLNVIPITLPPLRERQED IELLVHYFLHLHTRRLGSVYPGIAPDVVEILRKHRWPGNLRELSNLMEYLVNVVPSGE VIDSTLLPPNLLNNGTTEQSDVTEVSEAHLSLDDAGGTALEEMEKQMIREALSRHNSK KQVADELGIGIATLYRKIKKYELLNT" gene 3006262..3007452 /gene="ygeW" /locus_tag="b2870" /gene_synonym="ECK2866; JW5463" /db_xref="EcoGene:EG13053" /db_xref="GeneID:945826" CDS 3006262..3007452 /gene="ygeW" /locus_tag="b2870" /gene_synonym="ECK2866; JW5463" /function="putative enzyme; Not classified" /note="putative carbamoyl transferase" /codon_start=1 /transl_table=11 /product="putative carbamoyltransferase" /protein_id="YP_026185.1" /db_xref="GI:49176276" /db_xref="ASAP:ABE-0009425" /db_xref="UniProtKB/Swiss-Prot:Q46803" /db_xref="EcoGene:EG13053" /db_xref="GeneID:945826" /translation="MMKTVNELIKDINSLTSHLHEKDFLLTWEQTPDELKQVLDVAAA LKALRAENISTKVFNSGLGISVFRDNSTRTRFSYASALNLLGLAQQDLDEGKSQIAHG ETVRETANMISFCADAIGIRDDMYLGAGNAYMREVGAALDDGYKQGVLPQRPALVNLQ CDIDHPTQSMADLAWLREHFGSLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRF GMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDADIVYPKSWAPYK VMEERTELLRANDHEGLKALEKQCLAQNAQHKDWHCTEEMMELTRDGEALYMHCLPAD ISGVSCKEGEVTEGVFEKYRIATYKEASWKPYIIAAMILSRKYAKPGALLEQLLKEAQ ERVK" gene 3007510..3008706 /gene="ygeX" /locus_tag="b2871" /gene_synonym="ECK2867; JW2839" /db_xref="EcoGene:EG13054" /db_xref="GeneID:947012" CDS 3007510..3008706 /gene="ygeX" /locus_tag="b2871" /gene_synonym="ECK2867; JW2839" /EC_number="4.3.1.15" /function="enzyme; Not classified" /note="putative diaminopropionate ammonia-lyase" /codon_start=1 /transl_table=11 /product="2,3-diaminopropionate ammonia lyase, PLP-dependent" /protein_id="NP_417347.1" /db_xref="GI:16130773" /db_xref="ASAP:ABE-0009428" /db_xref="UniProtKB/Swiss-Prot:P66899" /db_xref="EcoGene:EG13054" /db_xref="GeneID:947012" /translation="MSVFSLKIDIADNKFFNGETSPLFSQSQAKLARQFHQKIAGYRP TPLCALDDLANLFGVKKILVKDESKRFGLNAFKMLGGAYAIAQLLCEKYHLDIETLSF EHLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAE CIVTDMNYDDTVRLTMQHAQQHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMR EMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADCIYRSGVKGDIV NVGGDMATIMAGLACGEPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRI ISGESGAVGLGVLAAVHYHPQRQSLMEKLALNKDAVVLVISTEGDTDVKHYREVVWEG KHAVAP" gene 3008764..3009975 /gene="ygeY" /locus_tag="b2872" /gene_synonym="ECK2868; JW2840" /db_xref="EcoGene:EG13055" /db_xref="GeneID:947360" CDS 3008764..3009975 /gene="ygeY" /locus_tag="b2872" /gene_synonym="ECK2868; JW2840" /function="putative enzyme; Not classified" /note="putative deacetylase" /codon_start=1 /transl_table=11 /product="putative peptidase" /protein_id="NP_417348.1" /db_xref="GI:16130774" /db_xref="ASAP:ABE-0009434" /db_xref="UniProtKB/Swiss-Prot:P65807" /db_xref="EcoGene:EG13055" /db_xref="GeneID:947360" /translation="MAKNIPFKLILEKAKDYQADMTRFLRDMVAIPSESCDEKRVVHR IKEEMEKVGFDKVEIDPMGNVLGYIGHGPRLVAMDAHIDTVGIGNIKNWDFDPYEGME TDELIGGRGTSDQEGGMASMVYAGKIIKDLGLEDEYTLLVTGTVQEEDCDGLCWQYII EQSGIRPEFVVSTEPTDCQVYRGQRGRMEIRIDVQGVSCHGSAPERGDNAIFKMGPIL GELQELSQRLGYDEFLGKGTLTVSEIFFTSPSRCAVADSCAVSIDRRLTWGETWEGAL DEIRALPAVQKANAVVSMYNYDRPSWTGLVYPTECYFPTWKVEEDHFTVKALVNAYEG LFGKAPVVDKWTFSTNGVSIMGRHGIPVIGFGPGKEPEAHAPNEKTWKSHLVTCAAMY AAIPLSWLATE" gene 3010028..3011413 /gene="hyuA" /locus_tag="b2873" /gene_synonym="ECK2869; JW2841; ygeZ" /db_xref="EcoGene:EG13056" /db_xref="GeneID:947359" CDS 3010028..3011413 /gene="hyuA" /locus_tag="b2873" /gene_synonym="ECK2869; JW2841; ygeZ" /EC_number="3.5.2.-" /codon_start=1 /transl_table=11 /product="D-stereospecific phenylhydantoinase" /protein_id="NP_417349.4" /db_xref="GI:90111504" /db_xref="ASAP:ABE-0009436" /db_xref="UniProtKB/Swiss-Prot:Q46806" /db_xref="EcoGene:EG13056" /db_xref="GeneID:947359" /translation="MRVLIKNGTVVNADGQAKQDLLIESGIVRQLGNNISPQLPYEEI DATGCYVFPGGVDVHTHFNIDVGIARSCDDFFTGTRAAACGGTTTIIDHMGFGPNGCR LRHQLEVYRGYAAHKAVIDYSFHGVIQHINHAILDEIPMIVEEGLSSFKLYLTYQYKL NDDEVLQALRRLHESGALTTVHPENDAAIASKRAEFIAAGLTAPRYHALSRPLECEAE AIARMINLAQIAGNAPLYIVHLSNGLGLDYLRLARANHQPVWVETCPQYLLLDERSYD TEDGMKFILSPPLRNVREQDKLWCGISDGAIDVVATDHCTFSMAQRLQISKGDFSRCP NGLPGVENRMQLLFSSGVMTGRITPERFVELTSAMPARLFGLWPQKGLLAPGSDGDVV IIDPRQSQQIQHRHLHDNADYSPWEGFTCQGAIVRTLSRGETIFCDGTFTGKAGRGRF LRRKPFVPPVL" gene 3011461..3012393 /gene="yqeA" /locus_tag="b2874" /gene_synonym="ECK2870; JW2842" /db_xref="EcoGene:EG13057" /db_xref="GeneID:947358" CDS 3011461..3012393 /gene="yqeA" /locus_tag="b2874" /gene_synonym="ECK2870; JW2842" /function="putative enzyme; Not classified" /note="putative kinase" /codon_start=1 /transl_table=11 /product="putative amino acid kinase" /protein_id="NP_417350.1" /db_xref="GI:16130776" /db_xref="ASAP:ABE-0009438" /db_xref="UniProtKB/Swiss-Prot:Q46807" /db_xref="EcoGene:EG13057" /db_xref="GeneID:947358" /translation="MSKKIVLALGGNALGDDLAGQMKAVKITSQAIVDLIAQGHEVIV THGNGPQVGMINQAFEAAAKTEAHSPMLPMSVCVALSQGYIGYDLQNALREELLSRGI NKPVATLVTQVEVDANDPAFLNPTKPIGSFFTEQEAEQLTKQGYTLKEDAGRGYRRVV ASPKPVDIIEKETVKALVDAGQVVITVGGGGIPVIREGNHLRGASAVIDKDWASARLA EMIDADMLIILTAVEKVAINFGKENEQWLDRLSLSDAERFIEEGHFAKGSMLPKVEAA ASFARSRAGREALITVLSKAKEGIEGKTGTVICQ" repeat_region 3012401..3012604 /note="RIP209 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site" gene complement(3012614..3014239) /gene="yqeB" /locus_tag="b2875" /gene_synonym="ECK2871; JW2843" /db_xref="EcoGene:EG13058" /db_xref="GeneID:947357" CDS complement(3012614..3014239) /gene="yqeB" /locus_tag="b2875" /gene_synonym="ECK2871; JW2843" /function="putative enzyme; Not classified" /note="putative synthases" /codon_start=1 /transl_table=11 /product="XdhC-CoxI family protein with NAD(P)-binding Rossman fold" /protein_id="NP_417351.1" /db_xref="GI:16130777" /db_xref="ASAP:ABE-0009441" /db_xref="UniProtKB/Swiss-Prot:Q46808" /db_xref="EcoGene:EG13058" /db_xref="GeneID:947357" /translation="MNIFTEAAKLEEQNCPFAMAQIVDSRGSTPRHSAQMLVRADGSI VGTIGGGMVERKVIEESLQALQERKPRLFHGRMARNGADAVGSDCGGAMSVFISVHGM RPRLVLIGAGHVNRAIAQSAALLGFDIAVADIYRESLNPELFPPSTTLLHAESFGAAV EALDIRPDNFVLIATNNQDREALDKLIEQPIAWLGLLASRRKVQLFLRQLREKGVAEE HIARLHAPVGYNIGAETPQEIAISVLAEILQVKNNAPGGLMMKPSHPSGHQLVVIRGA GDIASGVALRLYHAGFKVIMLEVEKPTVIRCTVAFAQAVFDGEMTVEGVTARLATSSA EAMKLTERGFIPVMVDPACSLLDELKPLCVVDAILAKQNLGTRADMAPVTIALGPGFT AGKDCHAVIETNRGHWLGQVIYSGCAQENTGVPGNIMGHTTRRVIRAPAAGIMRSNVK LGDLVKEGDVIAWIGEHEIKAPLTGMVRGLLNDGLAVVGGFKIGDIDPRGETADFTSV SDKARAIGGGVLEALMMLMHQGVKATKEVLEVA" gene complement(3014287..3015057) /gene="yqeC" /locus_tag="b2876" /gene_synonym="ECK2872; JW5464" /db_xref="EcoGene:EG13059" /db_xref="GeneID:947350" CDS complement(3014287..3015057) /gene="yqeC" /locus_tag="b2876" /gene_synonym="ECK2872; JW5464" /codon_start=1 /transl_table=11 /product="putative selenium-dependent hydroxylase accessory protein" /protein_id="NP_417352.2" /db_xref="GI:90111505" /db_xref="ASAP:ABE-0009443" /db_xref="UniProtKB/Swiss-Prot:Q46809" /db_xref="EcoGene:EG13059" /db_xref="GeneID:947350" /translation="MKSIVDPSALVIDLGAQKRPTVISVVGAGGKTSLLFWLAELLQA SGRRVLITTTTHMFMPTSHWPVVFCRDPAMLPHASLTSPISFCFHSWKANQGKVQGFT PEAIDALVQRPECDVILIEADGSRGMPLKAPDEHEPCIPKSSCCVIAVMGGHTLGAKV STENVHRWSQFADITGLTPDATLQLSDLVALVRHPQGAFKNVPQGCRRVWFINRFSQC ENAIAQSELLQPLQQHDVEAIWLGDIQEHPAIARRFVN" gene 3015160..3015738 /gene="mocA" /locus_tag="b2877" /gene_synonym="ECK2873; JW2845; ygfJ" /db_xref="EcoGene:EG13060" /db_xref="GeneID:947356" CDS 3015160..3015738 /gene="mocA" /locus_tag="b2877" /gene_synonym="ECK2873; JW2845; ygfJ" /codon_start=1 /transl_table=11 /product="CTP:molybdopterin cytidylyltransferase" /protein_id="NP_417353.1" /db_xref="GI:16130779" /db_xref="ASAP:ABE-0009447" /db_xref="UniProtKB/Swiss-Prot:Q46810" /db_xref="EcoGene:EG13060" /db_xref="GeneID:947356" /translation="MSAIDCIITAAGLSSRMGQWKMMLPWEQGTILDTSIKNALQFCS RIILVTGYRGNELHERYANQSNITIIHNPDYAQGLLTSVKAAVPAVQTEHCFLTHGDM PTLTIDIFRKIWSLRNDGAILPLHNGIPGHPILVSKPCLMQAIQRPNVTNMRQALLMG DHYSVEIENAEIILDIDTPDDFITAKERYTEI" gene 3016060..3019158 /gene="ygfK" /locus_tag="b2878" /gene_synonym="ECK2874; JW5923" /db_xref="EcoGene:EG13061" /db_xref="GeneID:949068" CDS 3016060..3019158 /gene="ygfK" /locus_tag="b2878" /gene_synonym="ECK2874; JW5923" /function="putative enzyme; Not classified" /note="putative oxidoreductase, Fe-S subunit" /codon_start=1 /transl_table=11 /product="putative Fe-S subunit oxidoreductase subunit" /protein_id="NP_417354.1" /db_xref="GI:16130780" /db_xref="ASAP:ABE-0009450" /db_xref="UniProtKB/Swiss-Prot:Q46811" /db_xref="EcoGene:EG13061" /db_xref="GeneID:949068" /translation="MGDIMRPIPFEELLTRIFDEYQQQRSIFGIPEQQFYSPVKGKTV SVFGETCATPVGPAAGPHTQLAQNIVTSWLTGGRFIELKTVQILDRLELEKPCIDAED ECFNTEWSTEFTLLKAWDEYLKAWFALHLLEAMFQPSDSGKSFIFNMSVGYNLEGIKQ PPMQQFIDNMMDASDHPKFAQYRDTLNKLLQDDAFLARHGLQEKRESLQALPARIPTS MVHGVTLSTMHGCPPHEIEAICRYMLEEKGLNTFVKLNPTLLGYARVREILDVCGFGY IGLKEESFDHDLKLTQALEMLERLMALAKEKSLGFGVKLTNTLGTINNKGALPGEEMY MSGRALFPLSINVAAVLSRAFDGKLPISYSGGASQLTIRDIFDTGIRPITMATDLLKP GGYLRLSACMRELEGSDAWGLDHVDVERLNRLAADALTMEYTQKHWKPEERIEVAEDL PLTDCYVAPCVTACAIKQDIPEYIRLLGEHRYADALELIYQRNALPAITGHICDHQCQ YNCTRLDYDSALNIRELKKVALEKGWDEYKQRWHKPAGSGSRHPVAVIGAGPAGLAAG YFLARAGHPVTLFEREANAGGVVKNIIPQFRIPAELIQHDIDFVAAHGVKFEYGCSPD LTIEQLKNQGFHYVLIATGTDKNSGVKLAGDNQNVWKSLPFLREYNKGTALKLGKHVV VVGAGNTAMDCARAALRVPGVEKATIVYRRSLQEMPAWREEYEEALHDGVEFRFLNNP ERFDADGTLTLRVMSLGEPDEKGRRRPVETNETVTLLVDSLITAIGEQQDTEALNAMG VPLDKNGWPDVDHNGETRLTDVFMIGDVQRGPSSIVAAVGTARRATDAILSRENIRSH QNDKYWNNVNPAEIYQRKGDISITLVNSDDRDAFVAQEAARCLECNYVCSKCVDVCPN RANVSIAVPGFQNRFQTLHLDAYCNECGNCAQFCPWNGKPYKDKITVFSLAQDFDNSS NPGFLVEDCRVRVRLNNQSWVLNIDSKGQFNNVPPELNDMCRIISHVHQHHHYLLGRV EV" gene 3019161..3020489 /gene="ssnA" /locus_tag="b2879" /gene_synonym="ECK2875; JW2847; ygfL" /db_xref="EcoGene:EG13062" /db_xref="GeneID:949072" CDS 3019161..3020489 /gene="ssnA" /locus_tag="b2879" /gene_synonym="ECK2875; JW2847; ygfL" /function="putative structure; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 10074077" /GO_process="GO:0007049 - cell cycle" /codon_start=1 /transl_table=11 /product="putative chlorohydrolase/aminohydrolase" /protein_id="NP_417355.4" /db_xref="GI:90111506" /db_xref="ASAP:ABE-0009452" /db_xref="UniProtKB/Swiss-Prot:Q46812" /db_xref="EcoGene:EG13062" /db_xref="GeneID:949072" /translation="MLILKNVTAVQLHPAKVQEGVDIAIENDVIVAIGDALTQRYPDA SFKEMHGRIVMPGIVCSHNHFYSGLSRGIMANIAPCPDFISTLKNLWWRLDRALDEES LYYSGLICSLEAIKSGCTSVIDHHASPAYIGGSLSTLRDAFLKVGLRAMTCFETTDRN NGIKELQEGVEENIRFARLIDEAKKATSEPYLVEAHIGAHAPFTVPDAGLEMLREAVK ATGRGLHIHAAEDLYDVSYSHHWYGKDLLARLAQFDLIDSKTLVAHGLYLSKDDITLL NQRDAFLVHNARSNMNNHVGYNHHLSDIRNLALGTDGIGSDMFEEMKFAFFKHRDAGG PLWPDSFAKALTNGNELMSRNFGAKFGLLEAGYKADLTICDYNSPTPLLADNIAGHIA FGMGSGSVHSVMVNGVMVYEDRQFNFDCDSIYAQARKAAASMWRRMDALA" gene 3020540..3021319 /gene="ygfM" /locus_tag="b2880" /gene_synonym="ECK2876; JW2848" /db_xref="EcoGene:EG13063" /db_xref="GeneID:949071" CDS 3020540..3021319 /gene="ygfM" /locus_tag="b2880" /gene_synonym="ECK2876; JW2848" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_417356.1" /db_xref="GI:16130782" /db_xref="ASAP:ABE-0009456" /db_xref="UniProtKB/Swiss-Prot:P64557" /db_xref="EcoGene:EG13063" /db_xref="GeneID:949071" /translation="MIEQFFRPDSVEQALELKRRYQDEAVWFAGGSKLNATPTRTDKK IAISLQDLELDWVDWDNGALRIGAMSRLQPLRDARFIPAALREALGFVYSRHVRNQST IGGEIAARQEESVLLPVLLALDAELVFGNGETLSIEDYLACPCDRLLTEIIIKDPYRT CATRKISRSQAGLTVVTAAVAMTDHDGMRIALDGVASKALRLHDVEKQNLEGNALEQA VANAIFPQEDLRGSVAYKRYITGVLVADLYADCQQAGEEAV" gene 3021316..3024186 /gene="xdhD" /locus_tag="b2881" /gene_synonym="ECK2877; JW2849; ygfN" /db_xref="EcoGene:EG13064" /db_xref="GeneID:949079" CDS 3021316..3024186 /gene="xdhD" /locus_tag="b2881" /gene_synonym="ECK2877; JW2849; ygfN" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative hypoxanthine oxidase, molybdopterin-binding/Fe-S binding" /protein_id="NP_417357.1" /db_xref="GI:16130783" /db_xref="ASAP:ABE-0009459" /db_xref="UniProtKB/Swiss-Prot:Q46814" /db_xref="EcoGene:EG13064" /db_xref="GeneID:949079" /translation="MIIHFTLNGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFA GSDAIIFNGNIVNASLLIAAQLEKADIRTAESLGKWNELSLVQQAMVDVGVVQSGYND PAAALIITDLLDRIAAPTREEIDDALSGLFSRDAGWQQYYQVIELAVARKNNPQATID IAPTFRDDLEVIGKHYPKTDAAKMVQAKPCYVEDRVTADACVIKMLRSPHAHALITHL DVSKAEALPGVVHVITHLNCPDIYYTPGGQSAPEPSPLDRRMFGKKMRHVGDRVAAVV AESEEIALEALKLIDVEYEVLKPVMSIDEAMAEDAPVVHDEPVVYVAGAPDTLEDDNS HAAQRGEHMIINFPIGSRPRKNIAASIHGHIGDMDKGFADADVIIERTYNSTQAQQCP TETHICFTRMDGDRLVIHASTQVPWHLRRQVARLVGMKQHKVHVIKERVGGGFGSKQD ILLEEVCAWATCVTGRPVLFRYTREEEFIANTSRHVAKVTVKLGAKKDGRLTAVKMDF RANTGPYGNHSLTVPCNGPALSLPLYPCDNVDFQVTTYYSNICPNGAYQGYGAPKGNF AITMALAELAEQLQIDQLEIIERNRVHEGQELKILGAIGEGKAPTSVPSAASCALEEI LRQGREMIQWSSPKPQNGDWHIGRGVAIIMQKSGIPDIDQANCMIKLESDGTFIVHSG GADIGTGLDTVVTKLAAEVLHCPPQDVHVISGDTDHALFDKGAYASSGTCFSGNAARL AAENLREKILFHGAQMLGEPVADVQLATPGVVRGKKGEVSFGDIAHKGETGTGFGSLV GTGSYITPDFAFPYGANFAEVAVNTRTGEIRLDKFYALLDCGTPVNPELALGQIYGAT LRAIGHSMSEEIIYDAEGHPLTRDLRSYGAPKIGDIPRDFRAVLVPSDDKVGPFGAKS ISEIGVNGAAPAIATAIHDACGIWLREWHFTPEKILTALEKI" gene 3024351..3025751 /gene="xanQ" /locus_tag="b2882" /gene_synonym="ECK2878; JW2850; ygfO" /db_xref="EcoGene:EG13065" /db_xref="GeneID:949075" CDS 3024351..3025751 /gene="xanQ" /locus_tag="b2882" /gene_synonym="ECK2878; JW2850; ygfO" /function="transport; Transport of small molecules: Nucleosides, purines, pyrimidines" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="xanthine permease" /protein_id="NP_417358.2" /db_xref="GI:90111507" /db_xref="ASAP:ABE-0009463" /db_xref="UniProtKB/Swiss-Prot:P67444" /db_xref="EcoGene:EG13065" /db_xref="GeneID:949075" /translation="MSDINHAGSDLIFELEDRPPFHQALVGAITHLLAIFVPMVTPAL IVGAALQLSAETTAYLVSMAMIASGIGTWLQVNRYGIVGSGLLSIQSVNFSFVTVMIA LGSSMKSDGFHEELIMSSLLGVSFVGAFLVVGSSFILPYLRRVITPTVSGIVVLMIGL SLIKVGIIDFGGGFAAKSSGTFGNYEHLGVGLLVLIVVIGFNCCRSPLLRMGGIAIGL CVGYIASLCLGMVDFSSMRNLPLITIPHPFKYGFSFSFHQFLVVGTIYLLSVLEAVGD ITATAMVSRRPIQGEEYQSRLKGGVLADGLVSVIASAVGSLPLTTFAQNNGVIQMTGV ASRYVGRTIAVMLVILGLFPMIGGFFTTIPSAVLGGAMTLMFSMIAIAGIRIIITNGL KRRETLIVATSLGLGLGVSYDPEIFKILPASIYVLVENPICAGGLTAILLNIILPGGY RQENVLPGITSAEEMD" gene 3025766..3027085 /gene="guaD" /locus_tag="b2883" /gene_synonym="ECK2879; JW5466; ygfP" /db_xref="EcoGene:EG13066" /db_xref="GeneID:947366" CDS 3025766..3027085 /gene="guaD" /locus_tag="b2883" /gene_synonym="ECK2879; JW5466; ygfP" /EC_number="3.5.4.3" /codon_start=1 /transl_table=11 /product="guanine deaminase" /protein_id="NP_417359.1" /db_xref="GI:16130785" /db_xref="ASAP:ABE-0009465" /db_xref="UniProtKB/Swiss-Prot:P76641" /db_xref="EcoGene:EG13066" /db_xref="GeneID:947366" /translation="MMSGEHTLKAVRGSFIDVTRTIDNPEEIASALRFIEDGLLLIKQ GKVEWFGEWENGKHQIPDTIRVRDYRGKLIVPGFVDTHIHYPQSEMVGAYGEQLLEWL NKHTFPTERRYEDLEYAREMSAFFIKQLLRNGTTTALVFGTVHPQSVDALFEAASHIN MRMIAGKVMMDRNAPDYLLDTAESSYHQSKELIERWHKNGRLLYAITPRFAPTSSPEQ MAMAQRLKEEYPDTWVHTHLCENKDEIAWVKSLYPDHDGYLDVYHQYGLTGKNCVFAH CVHLEEKEWDRLSETKSSIAFCPTSNLYLGSGLFNLKKAWQKKVKVGMGTDIGAGTTF NMLQTLNEAYKVLQLQGYRLSAYEAFYLATLGGAKSLGLDDLIGNFLPGKEADFVVME PTATPLQQLRYDNSVSLVDKLFVMMTLGDDRSIYRTYVDGRLVYERN" gene 3027121..3028488 /gene="ghxQ" /locus_tag="b4464" /gene_synonym="ECK2880; JW5467; ygfQ; ygfR" /db_xref="EcoGene:EG13067" /db_xref="GeneID:2847748" CDS 3027121..3028488 /gene="ghxQ" /locus_tag="b4464" /gene_synonym="ECK2880; JW5467; ygfQ; ygfR" /function="transport; Transport of small molecules: Nucleosides, purines, pyrimidines" /codon_start=1 /transl_table=11 /product="guanine/hypoxanthine permease, high affinity; guanine/hypoxanthine:H+ symporter" /protein_id="YP_026186.1" /db_xref="GI:49176279" /db_xref="ASAP:ABE-0174113" /db_xref="UniProtKB/Swiss-Prot:Q46817" /db_xref="EcoGene:EG13067" /db_xref="GeneID:2847748" /translation="MSGDILQTPDAPKPQGALDNYFKITARGSTVRQEVLAGLTTFLA MVYSVIVVPGMLGKAGFPPAAVFVATCLVAGFGSLLMGLWANLPMAIGCAISLTAFTA FSLVLGQQISVPVALGAVFLMGVIFTAISVTGVRTWILRNLPMGIAHGTGIGIGLFLL LIAANGVGMVIKNPIEGLPVALGAFTSFPVMMSLLGLAVIFGLEKCRVPGGILLVIIA ISIIGLIFDPAVKYHGLVAMPSLTGEDGKSLIFSLDIMGALQPTVLPSVLALVMTAVF DATGTIRAVAGQANLLDKDNQIINGGKALTSDSVSSIFSGLVGAAPAAVYIESAAGTA AGGKTGLTATVVGALFLLILFLSPLSFLIPGYATAPALMYVGLLMLSNVSKLDFNDFI DAMAGLVCAVFIVLTCNIVTGIMLGFVTLVVGRVFAREWQKLNIGTVIITAALVAFYA GGWAI" gene complement(3028524..3029012) /gene="ygfS" /locus_tag="b2886" /gene_synonym="ECK2881; JW5468" /db_xref="EcoGene:EG13069" /db_xref="GeneID:949016" CDS complement(3028524..3029012) /gene="ygfS" /locus_tag="b2886" /gene_synonym="ECK2881; JW5468" /function="putative enzyme; Not classified" /note="putative oxidoreductase, Fe-S subunit" /codon_start=1 /transl_table=11 /product="putative 4Fe-4S ferredoxin-type oxidoreductase subunit" /protein_id="NP_417362.4" /db_xref="GI:90111508" /db_xref="ASAP:ABE-0009471" /db_xref="UniProtKB/Swiss-Prot:Q46819" /db_xref="EcoGene:EG13069" /db_xref="GeneID:949016" /translation="MKSLIIVNPADCIGCRTCEVACVVAHPSEQELNADVFLPRLKVQ RLDSISAPVMCHQCENAPCVGACPVGALTMGEQVVQTNSARCIGCQSCVSACPFGMIT IQSLPGDTRQQIVKCDLCEQREEGPACVESCPTQALQLLTERELRRVRQQRIVASGEN PL" gene complement(3029012..3030931) /gene="ygfT" /locus_tag="b2887" /gene_synonym="ECK2882; JW5469" /db_xref="EcoGene:EG13070" /db_xref="GeneID:949018" CDS complement(3029012..3030931) /gene="ygfT" /locus_tag="b2887" /gene_synonym="ECK2882; JW5469" /function="putative enzyme; Not classified" /note="putative oxidoreductase, Fe-S subunit" /codon_start=1 /transl_table=11 /product="putative oxidoreductase, Fe-S subunit/nucleotide-binding subunit" /protein_id="NP_417363.2" /db_xref="GI:90111509" /db_xref="ASAP:ABE-0009473" /db_xref="UniProtKB/Swiss-Prot:Q46820" /db_xref="EcoGene:EG13070" /db_xref="GeneID:949018" /translation="MNKFIAAEAAECIGCHACEIACAVAHNQENWPLSHSDFRPRIHV VGKGQAANPVACHHCNNAPCVTACPVNALTFQSDSVQLDEQKCIGCKRCAIACPFGVV EMVDTIAQKCDLCNQRSSGTQACIEVCPTQALRLMDDKGLQQIKVARQRKTAAGKASS DAQPSRSAALLPVNSRKGADKISASERKTHFGEIYCGLDPQQATYESDRCVYCAEKAN CNWHCPLHNAIPDYIRLVQEGKIIEAAELCHQTSSLPEICGRVCPQDRLCEGACTLKD HSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGV QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFSDL TSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVE GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQF NVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQ AHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGADLVVTAMAAGR QAARDMLTLFDTKAS" gene 3031367..3032815 /gene="uacT" /locus_tag="b2888" /gene_synonym="ECK2883; JW5470; ygfU" /db_xref="EcoGene:EG13071" /db_xref="GeneID:949017" CDS 3031367..3032815 /gene="uacT" /locus_tag="b2888" /gene_synonym="ECK2883; JW5470; ygfU" /function="transport; Transport of small molecules: Nucleosides, purines, pyrimidines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative permease" /codon_start=1 /transl_table=11 /product="uric acid permease" /protein_id="NP_417364.2" /db_xref="GI:90111510" /db_xref="ASAP:ABE-0009478" /db_xref="UniProtKB/Swiss-Prot:Q46821" /db_xref="EcoGene:EG13071" /db_xref="GeneID:949017" /translation="MSAIDSQLPSSSGQDRPTDEVDRILSPGKLIILGLQHVLVMYAG AVAVPLMIGDRLGLSKEAIAMLISSDLFCCGIVTLLQCIGIGRFMGIRLPVIMSVTFA AVTPMIAIGMNPDIGLLGIFGATIAAGFITTLLAPLIGRLMPLFPPLVTGVVITSIGL SIIQVGIDWAAGGKGNPQYGNPVYLGISFAVLIFILLITRYAKGFMSNVAVLLGIVFG FLLSWMMNEVNLSGLHDASWFAIVTPMSFGMPIFDPVSILTMTAVLIIVFIESMGMFL ALGEIVGRKLSSHDIIRGLRVDGVGTMIGGTFNSFPHTSFSQNVGLVSVTRVHSRWVC ISSGIILILFGMVPKMAVLVASIPQFVLGGAGLVMFGMVLATGIRILSRCNYTTNRYN LYIVAISLGVGMTPTLSHDFFSKLPAVLQPLLHSGIMLATLSAVVLNVFFNGYQHHAD LVKESVSDKDLKVRTVRMWLLMRKLKKNEHGE" gene 3032817..3032942 /gene="yqfG" /locus_tag="b4684" /gene_synonym="ECK4499" /db_xref="EcoGene:EG14489" /db_xref="GeneID:7751638" CDS 3032817..3032942 /gene="yqfG" /locus_tag="b4684" /gene_synonym="ECK4499" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_002791254.1" /db_xref="GI:226524745" /db_xref="UniProtKB/Swiss-Prot:C1P614" /db_xref="EcoGene:EG14489" /db_xref="GeneID:7751638" /translation="MNFLMRAIFSLLLLFTLSIPVISDCVAMAIESRFKYMMLLF" gene 3033065..3033613 /gene="idi" /locus_tag="b2889" /gene_synonym="ECK2884; JW2857; ygfV" /db_xref="EcoGene:EG13072" /db_xref="GeneID:949020" CDS 3033065..3033613 /gene="idi" /locus_tag="b2889" /gene_synonym="ECK2884; JW2857; ygfV" /EC_number="5.3.3.2" /function="putative enzyme; Not classified" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="isopentenyl diphosphate isomerase" /protein_id="NP_417365.1" /db_xref="GI:16130791" /db_xref="ASAP:ABE-0009484" /db_xref="UniProtKB/Swiss-Prot:Q46822" /db_xref="EcoGene:EG13072" /db_xref="GeneID:949020" /translation="MQTEHVILLNAQGVPTGTLEKYAAHTADTRLHLAFSSWLFNAKG QLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEITPPESIYPDF RYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLHGIDATPWAFSP WMVMQATNREARKRLSAFTQLK" gene complement(3033657..3035174) /gene="lysS" /locus_tag="b2890" /gene_synonym="asuD; ECK2885; herC; JW2858" /db_xref="EcoGene:EG10552" /db_xref="GeneID:947372" CDS complement(3033657..3035174) /gene="lysS" /locus_tag="b2890" /gene_synonym="asuD; ECK2885; herC; JW2858" /EC_number="6.1.1.6" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="lysine tRNA synthetase, constitutive; suppressor of ColE1 mutation in primer RNA" /codon_start=1 /transl_table=11 /product="lysine tRNA synthetase, constitutive" /protein_id="NP_417366.1" /db_xref="GI:16130792" /db_xref="ASAP:ABE-0009486" /db_xref="UniProtKB/Swiss-Prot:P0A8N3" /db_xref="EcoGene:EG10552" /db_xref="GeneID:947372" /translation="MSEQHAQGADAVVDLNNELKTRREKLANLREQGIAFPNDFRRDH TSDQLHAEFDGKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARD DLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGL QDQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGA AARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFT MMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIK KYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITE YPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAG DDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAMRPVK" gene complement(3035184..3036282) /gene="prfB" /locus_tag="b2891" /gene_synonym="ECK2886; JW5847; supK" /db_xref="EcoGene:EG10762" /db_xref="GeneID:947369" CDS complement(join(3035184..3036206,3036208..3036282)) /gene="prfB" /locus_tag="b2891" /gene_synonym="ECK2886; JW5847; supK" /function="factor; Proteins - translation and modification" /experiment="N-terminus verified by Edman degradation: PMID 3889910" /ribosomal_slippage /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006412 - translation" /note="an in-frame premature UGA termination codon is located within the prfB sequence, and a naturally occuring +1 frameshift is required for synthesis of RF-2" /codon_start=1 /transl_table=11 /product="peptide chain release factor RF-2" /protein_id="NP_417367.1" /db_xref="GI:16130793" /db_xref="ASAP:ABE-0009488" /db_xref="UniProtKB/Swiss-Prot:P07012" /db_xref="EcoGene:EG10762" /db_xref="GeneID:947369" /translation="MFEINPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQP DVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAE LDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRG FKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFS SAFVYPEVDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVRITHIPTGIVTQCQN DRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK DLRTGVETRNTQAVLDGSLDQFIEASLKAGL" gene complement(3036373..3038106) /gene="recJ" /locus_tag="b2892" /gene_synonym="ECK2887; JW2860" /db_xref="EcoGene:EG10830" /db_xref="GeneID:947367" CDS complement(3036373..3038106) /gene="recJ" /locus_tag="b2892" /gene_synonym="ECK2887; JW2860" /EC_number="3.1.-.-" /function="enzyme; Degradation of DNA" /GO_process="GO:0006308 - DNA catabolic process" /note="ssDNA exonuclease, 5' --> 3' specific" /codon_start=1 /transl_table=11 /product="ssDNA exonuclease, 5' --> 3'-specific" /protein_id="NP_417368.1" /db_xref="GI:16130794" /db_xref="ASAP:ABE-0009492" /db_xref="UniProtKB/Swiss-Prot:P21893" /db_xref="EcoGene:EG10830" /db_xref="GeneID:947367" /translation="MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERS VKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSN IDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTD HHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERNIA IPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQ KLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQ GMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG DGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFKLFQQRFG ELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ QRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRS LQIIIDNIWPI" gene complement(3038112..3038822) /gene="dsbC" /locus_tag="b2893" /gene_synonym="ECK2888; JW2861; xprA" /db_xref="EcoGene:EG11070" /db_xref="GeneID:947363" CDS complement(3038112..3038822) /gene="dsbC" /locus_tag="b2893" /gene_synonym="ECK2888; JW2861; xprA" /EC_number="5.3.4.1" /function="enzyme; Surface structures" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006457 - protein folding" /codon_start=1 /transl_table=11 /product="protein disulfide isomerase II" /protein_id="NP_417369.1" /db_xref="GI:16130795" /db_xref="ASAP:ABE-0009494" /db_xref="UniProtKB/Swiss-Prot:P0AEG6" /db_xref="EcoGene:EG11070" /db_xref="GeneID:947363" /translation="MKKGFMLFTLLAAFSGFAQADDAAIQQTLAKMGIKSSDIQPAPV AGMKTVLTNSGVLYITDDGKHIIQGPMYDVSGTAPVNVTNKMLLKQLNALEKEMIVYK APQEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIW CAKDKNKAFDDVMAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLSNGTLVPGYQP PKEMKEFLDEHQKMTSGK" gene complement(3038847..3039743) /gene="xerD" /locus_tag="b2894" /gene_synonym="ECK2889; JW2862; xprB" /db_xref="EcoGene:EG11071" /db_xref="GeneID:947362" CDS complement(3038847..3039743) /gene="xerD" /locus_tag="b2894" /gene_synonym="ECK2889; JW2862; xprB" /function="enzyme; DNA - replication, repair, restriction/modification" /experiment="N-terminus verified by Edman degradation: PMID 8402918" /GO_process="GO:0006310 - DNA recombination" /codon_start=1 /transl_table=11 /product="site-specific tyrosine recombinase" /protein_id="NP_417370.1" /db_xref="GI:16130796" /db_xref="ASAP:ABE-0009500" /db_xref="UniProtKB/Swiss-Prot:P0A8P8" /db_xref="EcoGene:EG11071" /db_xref="GeneID:947362" /translation="MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG LTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLAS PKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI SLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQM TRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTT QIYTHVATERLRQLHQQHHPRA" gene 3039855..3040376 /gene="fldB" /locus_tag="b2895" /gene_synonym="ECK2890; JW2863" /db_xref="EcoGene:EG12697" /db_xref="GeneID:947361" CDS 3039855..3040376 /gene="fldB" /locus_tag="b2895" /gene_synonym="ECK2890; JW2863" /function="enzyme; Energy metabolism, carbon: Aerobic respiration" /GO_function="GO:0009055 - electron carrier activity" /GO_process="GO:0009060 - aerobic respiration" /codon_start=1 /transl_table=11 /product="flavodoxin 2" /protein_id="NP_417371.1" /db_xref="GI:16130797" /db_xref="ASAP:ABE-0009503" /db_xref="UniProtKB/Swiss-Prot:P0ABY4" /db_xref="EcoGene:EG12697" /db_xref="GeneID:947361" /translation="MNMGLFYGSSTCYTEMAAEKIRDIIGPELVTLHNLKDDSPKLME QYDVLILGIPTWDFGEIQEDWEAVWDQLDDLNLEGKIVALYGLGDQLGYGEWFLDALG MLHDKLSTKGVKFVGYWPTEGYEFTSPKPVIADGQLFVGLALDETNQYDLSDERIQSW CEQILNEMAEHYA" gene complement(3040416..3040823) /gene="cptA" /locus_tag="b2896" /gene_synonym="ECK2891; JW2864; pigV; ygfX" /db_xref="EcoGene:EG13074" /db_xref="GeneID:947379" CDS complement(3040416..3040823) /gene="cptA" /locus_tag="b2896" /gene_synonym="ECK2891; JW2864; pigV; ygfX" /codon_start=1 /transl_table=11 /product="toxin of CptAB toxin-antitoxin pair" /protein_id="NP_417372.1" /db_xref="GI:16130798" /db_xref="ASAP:ABE-0009505" /db_xref="UniProtKB/Swiss-Prot:Q46824" /db_xref="EcoGene:EG13074" /db_xref="GeneID:947379" /translation="MVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMV LLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQEWSIVKAPWMIKSGMMLRLRSD GGKRQHLWLAADSMDEAEWRDLRRILLQQETQR" gene complement(3040804..3041070) /gene="sdhE" /locus_tag="b2897" /gene_synonym="cptB; ECK2892; JW2865; ygfY" /db_xref="EcoGene:EG13075" /db_xref="GeneID:947382" CDS complement(3040804..3041070) /gene="sdhE" /locus_tag="b2897" /gene_synonym="cptB; ECK2892; JW2865; ygfY" /function="factor; Energy metabolism, carbon: TCA cycle" /codon_start=1 /transl_table=11 /product="flavinator of succinate dehydrogenase; antitoxin of CptAB toxin-antitoxin pair" /protein_id="NP_417373.1" /db_xref="GI:16130799" /db_xref="ASAP:ABE-0009507" /db_xref="UniProtKB/Swiss-Prot:P64559" /db_xref="EcoGene:EG13075" /db_xref="GeneID:947382" /translation="MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFI RLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRNRERGPVAI" gene 3041313..3042293 /gene="ygfZ" /locus_tag="b2898" /gene_synonym="ECK2893; JW2866; yzzW" /db_xref="EcoGene:EG12685" /db_xref="GeneID:947384" CDS 3041313..3042293 /gene="ygfZ" /locus_tag="b2898" /gene_synonym="ECK2893; JW2866; yzzW" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster repair protein, plumbagin resistance" /protein_id="NP_417374.1" /db_xref="GI:16130800" /db_xref="ASAP:ABE-0009512" /db_xref="UniProtKB/Swiss-Prot:P0ADE8" /db_xref="EcoGene:EG12685" /db_xref="GeneID:947384" /translation="MAFTPFPPRQPTASARLPLTLMTLDDWALATITGADSEKYMQGQ VTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIERRSVREPQLTELKKYA VFSKVTIAPDDERVLLGVAGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHPAER FLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQA LGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGSASRLPEAGEDLELKMGENWRRT GTVLAAVKLEDGQVVVQVVMNNDMEPDSIFRVRDDANTLHIEPLPYSLEE" repeat_region 3042321..3042475 /note="REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences" gene complement(3042489..3043148) /gene="yqfA" /locus_tag="b2899" /gene_synonym="ECK2894; JW2867" /db_xref="EcoGene:EG13077" /db_xref="GeneID:947381" CDS complement(3042489..3043148) /gene="yqfA" /locus_tag="b2899" /gene_synonym="ECK2894; JW2867" /function="putative enzyme; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="hemolysin III family HylIII inner membrane protein" /protein_id="NP_417375.1" /db_xref="GI:16130801" /db_xref="ASAP:ABE-0009515" /db_xref="UniProtKB/Swiss-Prot:P67153" /db_xref="EcoGene:EG13077" /db_xref="GeneID:947381" /translation="MVQKPLIKQGYSLAEEIANSVSHGIGLVFGIVGLVLLLVQAVDL NASATAITSYSLYGGSMILLFLASTLYHAIPHQRAKMWLKKFDHCAIYLLIAGTYTPF LLVGLDSPLARGLMIVIWSLALLGILFKLTIAHRFKILSLVTYLAMGWLSLVVIYEMA VKLAAGSVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYIGQ A" gene complement(3043312..3043623) /gene="yqfB" /locus_tag="b2900" /gene_synonym="ECK2895; JW2868" /db_xref="EcoGene:EG13078" /db_xref="GeneID:947380" CDS complement(3043312..3043623) /gene="yqfB" /locus_tag="b2900" /gene_synonym="ECK2895; JW2868" /codon_start=1 /transl_table=11 /product="UPF0267 family protein" /protein_id="NP_417376.1" /db_xref="GI:16130802" /db_xref="ASAP:ABE-0009518" /db_xref="UniProtKB/Swiss-Prot:P67603" /db_xref="EcoGene:EG13078" /db_xref="GeneID:947380" /translation="MQPNDITFFQRFQDDILAGRKTITIRDESESHFKTGDVLRVGRF EDDGYFCTIEVTATSTVTLDTLTEKHAEQENMTLTELKKVIADIYPGQTQFYVIEFKC L" gene 3043662..3045101 /gene="bglA" /locus_tag="b2901" /gene_synonym="bglD; ECK2896; JW2869; yqfC" /db_xref="EcoGene:EG13079" /db_xref="GeneID:947378" CDS 3043662..3045101 /gene="bglA" /locus_tag="b2901" /gene_synonym="bglD; ECK2896; JW2869; yqfC" /EC_number="3.2.1.86" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="6-phospho-beta-glucosidase A; cryptic" /codon_start=1 /transl_table=11 /product="6-phospho-beta-glucosidase A" /protein_id="NP_417377.1" /db_xref="GI:16130803" /db_xref="ASAP:ABE-0009523" /db_xref="UniProtKB/Swiss-Prot:Q46829" /db_xref="EcoGene:EG13079" /db_xref="GeneID:947378" /translation="MIVKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGA HGVPREITKEVLPGKYYPNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGD EAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRF AEVVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQ FVASALAVKAARRINPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLR GYYPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISG FEGSVPNPYVKASDWGWQIDPVGLRYALCELYERYQRPLFIVENGFGAYDKVEEDGSI NDDYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKH DDGTGDMSRSRKKSFNWYKEVIASNGEKL" repeat_region 3045113..3045140 /note="REP211 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(3045158..3045901) /gene="ygfF" /locus_tag="b2902" /gene_synonym="ECK2897; JW2870; yqfD" /db_xref="EcoGene:EG12971" /db_xref="GeneID:947373" CDS complement(3045158..3045901) /gene="ygfF" /locus_tag="b2902" /gene_synonym="ECK2897; JW2870; yqfD" /function="putative enzyme; Not classified" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="putative NAD(P)-dependent oxidoreductase" /protein_id="NP_417378.1" /db_xref="GI:16130804" /db_xref="ASAP:ABE-0009526" /db_xref="UniProtKB/Swiss-Prot:P52037" /db_xref="EcoGene:EG12971" /db_xref="GeneID:947373" /translation="MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVMN LITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAE RINRVLSTNVTGYFLCCREAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASK GAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQRGGQA EEVAQAIVWLLSDKASYVTGSFIDLAGGK" gene complement(3046168..3049041) /gene="gcvP" /locus_tag="b2903" /gene_synonym="ECK2898; JW2871" /db_xref="EcoGene:EG11810" /db_xref="GeneID:947394" CDS complement(3046168..3049041) /gene="gcvP" /locus_tag="b2903" /gene_synonym="ECK2898; JW2871" /EC_number="1.4.4.2" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_process="GO:0009063 - cellular amino acid catabolic process" /note="glycine decarboxylase, P protein of glycine cleavage system" /codon_start=1 /transl_table=11 /product="glycine decarboxylase, PLP-dependent, subunit P of glycine cleavage complex" /protein_id="NP_417379.1" /db_xref="GI:16130805" /db_xref="ASAP:ABE-0009531" /db_xref="UniProtKB/Swiss-Prot:P33195" /db_xref="EcoGene:EG11810" /db_xref="GeneID:947394" /translation="MTQTLSQLENSGAFIERHIGPDAAQQQEMLNAVGAQSLNALTGQ IVPKDIQLATPPQVGAPATEYAALAELKAIASRNKRFTSYIGMGYTAVQLPPVILRNM LENPGWYTAYTPYQPEVSQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAM AKRVSKLKNANRFFVASDVHPQTLDVVRTRAETFGFEVIVDDAQKVLDHQDVFGVLLQ QVGTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVP MGYGGPHAAFFAAKDEYKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNI CTSQVLLANIASLYAVYHGPVGLKRIANRIHRLTDILAAGLQQKGLKLRHAHYFDTLC VEVADKAGVLTRAEAAEINLRSDILNAVGITLDETTTRENVMQLFNVLLGDNHGLDID TLDKDVAHDSRSIQPAMLRDDEILTHPVFNRYHSETEMMRYMHSLERKDLALNQAMIP LGSCTMKLNAAAEMIPITWPEFAELHPFCPPEQAEGYQQMIAQLADWLVKLTGYDAVC MQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPASAHGTNPASAHMAGMQVVVVAC DKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDG ANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVV QIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQD AFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFHAPTMSFPVAGTLM VEPTESESKVELDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAEWAHP YSREVAVFPAGVADKYWPTVKRLDDVYGDRNLFCSCVPISEYQ" gene complement(3049160..3049549) /gene="gcvH" /locus_tag="b2904" /gene_synonym="ECK2899; JW2872" /db_xref="EcoGene:EG10371" /db_xref="GeneID:947393" CDS complement(3049160..3049549) /gene="gcvH" /locus_tag="b2904" /gene_synonym="ECK2899; JW2872" /function="carrier; Central intermediary metabolism: Pool, multipurpose conversions" /GO_process="GO:0009063 - cellular amino acid catabolic process" /note="in glycine cleavage complex, carrier of aminomethyl moiety via covalently bound lipoyl cofactor" /codon_start=1 /transl_table=11 /product="glycine cleavage complex lipoylprotein" /protein_id="NP_417380.1" /db_xref="GI:16130806" /db_xref="ASAP:ABE-0009534" /db_xref="UniProtKB/Swiss-Prot:P0A6T9" /db_xref="EcoGene:EG10371" /db_xref="GeneID:947393" /translation="MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVD LPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWI FKIKASDESELESLLDATAYEALLEDE" gene complement(3049573..3050667) /gene="gcvT" /locus_tag="b2905" /gene_synonym="ECK2900; JW2873" /db_xref="EcoGene:EG11442" /db_xref="GeneID:947390" CDS complement(3049573..3050667) /gene="gcvT" /locus_tag="b2905" /gene_synonym="ECK2900; JW2873" /EC_number="2.1.2.10" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_process="GO:0009063 - cellular amino acid catabolic process" /note="aminomethyltransferase (T protein; tetrahydrofolate-dependent) of glycine cleavage system" /codon_start=1 /transl_table=11 /product="aminomethyltransferase, tetrahydrofolate-dependent, subunit (T protein) of glycine cleavage complex" /protein_id="NP_417381.1" /db_xref="GI:16130807" /db_xref="ASAP:ABE-0009536" /db_xref="UniProtKB/Swiss-Prot:P27248" /db_xref="EcoGene:EG11442" /db_xref="GeneID:947390" /translation="MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRTDA GMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVY YFTEDFFRLVVNSATREKDLSWITQHAEPFGIEITVRDDLSMIAVQGPNAQAKAATLF NDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKP CGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTIAWEPADRDFIGREALEVQREH GTEKLVGLVMTEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI GETAIVQIRNREMPVKVTKPVFVRNGKAVA" gene complement(3051115..3052317) /gene="ubiI" /locus_tag="b2906" /gene_synonym="ECK2901; JW2874; visC" /db_xref="EcoGene:EG11333" /db_xref="GeneID:947389" CDS complement(3051115..3052317) /gene="ubiI" /locus_tag="b2906" /gene_synonym="ECK2901; JW2874; visC" /function="enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone" /codon_start=1 /transl_table=11 /product="2-octaprenylphenol hydroxylase, FAD-dependent" /protein_id="NP_417382.1" /db_xref="GI:16130808" /db_xref="ASAP:ABE-0009543" /db_xref="UniProtKB/Swiss-Prot:P25535" /db_xref="EcoGene:EG11333" /db_xref="GeneID:947389" /translation="MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQRVQEPLAANA PPQLRVSAINAASEKLLTRLGVWQDILSRRASCYHGMEVWDKDSFGHISFDDQSMGYS HLGHIVENSVIHYALWNKAHQSSDITLLAPAELQQVAWGENETFLTLKDGSMLTARLV IGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGEGILAFLPLS DPHLCSIVWSLSPEEAQRMQQASEDEFNRALNIAFDNRLGLCKVESARQVFPLTGRYA RQFASHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELKRLHRQGKDIGQYIYLRR YERSRKHSAALMLAGMQGFRDLFSGTNPAKKLLRDIGLKLADTLPGVKPQLIRQAMGL NDLPEWLR" gene complement(3052340..3053518) /gene="ubiH" /locus_tag="b2907" /gene_synonym="acd; ECK2902; JW2875; visB" /db_xref="EcoGene:EG11324" /db_xref="GeneID:947388" CDS complement(3052340..3053518) /gene="ubiH" /locus_tag="b2907" /gene_synonym="acd; ECK2902; JW2875; visB" /EC_number="1.14.13.-" /function="enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone" /GO_process="GO:0009060 - aerobic respiration" /note="2-octaprenyl-6-methoxyphenol--> 2-octaprenyl-6-methoxy-1, 4-benzoquinone" /codon_start=1 /transl_table=11 /product="2-octaprenyl-6-methoxyphenol hydroxylase, FAD/NAD(P)-binding" /protein_id="NP_417383.1" /db_xref="GI:16130809" /db_xref="ASAP:ABE-0009545" /db_xref="UniProtKB/Swiss-Prot:P25534" /db_xref="EcoGene:EG11324" /db_xref="GeneID:947388" /translation="MSVIIVGGGMAGATLALAISRLSHGALPVHLIEATAPESHAHPG FDGRAIALAAGTCQQLARIGVWQSLADCATAITTVHVSDRGHAGFVTLAAEDYQLAAL GQVVELHNVGQRLFALLRKAPGVTLHCPDRVANVARTQSHVEVTLESGETLTGRVLVA ADGTHSALATACGVDWQQEPYEQLAVIANVATSVAHEGRAFERFTQHGPLAMLPMSDG RCSLVWCHPLERREEVLSWSDEKFCRELQSAFGWRLGKITHAGKRSAYPLALTHAARS ITHRTVLVGNAAQTLHPIAGQGFNLGMRDVMSLAETLTQAQERGEDMGDYGVLCRYQQ RRQSDREATIGVTDSLVHLFANRWAPLVVGRNIGLMTMELFTPARDVLAQRTLGWVAR " gene complement(3053515..3054840) /gene="pepP" /locus_tag="b2908" /gene_synonym="ECK2903; JW2876" /db_xref="EcoGene:EG10697" /db_xref="GeneID:947385" CDS complement(3053515..3054840) /gene="pepP" /locus_tag="b2908" /gene_synonym="ECK2903; JW2876" /EC_number="3.4.11.9" /function="enzyme; Degradation of proteins, peptides, glyco" /codon_start=1 /transl_table=11 /product="proline aminopeptidase P II" /protein_id="NP_417384.1" /db_xref="GI:16130810" /db_xref="ASAP:ABE-0009549" /db_xref="UniProtKB/Swiss-Prot:P15034" /db_xref="EcoGene:EG10697" /db_xref="GeneID:947385" /translation="MSEISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPY RQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEK LGVDRALAFSEINQQLYQLLNGLDVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAP ATMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH EFNRHGARYPSYNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRT FPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKG DVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPD AEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEIEALMVAARKQ" gene complement(3054866..3055444) /gene="ygfB" /locus_tag="b2909" /gene_synonym="ECK2904; JW5473" /db_xref="EcoGene:EG11323" /db_xref="GeneID:947400" CDS complement(3054866..3055444) /gene="ygfB" /locus_tag="b2909" /gene_synonym="ECK2904; JW5473" /codon_start=1 /transl_table=11 /product="UPF0149 family protein" /protein_id="NP_417385.4" /db_xref="GI:90111511" /db_xref="ASAP:ABE-0009551" /db_xref="UniProtKB/Swiss-Prot:P0A8C4" /db_xref="EcoGene:EG11323" /db_xref="GeneID:947400" /translation="MSIQNEMPGYNEMNQYLNQQGTGLTPAEMHGLISGMICGGNDDS SWLPLLHDLTNEGMAFGHELAQALRKMHSATSDALQDDGFLFQLYLPDGDDVSVFDRA DALAGWVNHFLLGLGVTQPKLDKVTGETGEAIDDLRNIAQLGYDEDEDQEELEMSLEE IIEYVRVAALLCHDTFTHPQPTAPEVQKPTLH" gene 3055612..3055941 /gene="zapA" /locus_tag="b2910" /gene_synonym="ECK2905; JW2878; ygfE" /db_xref="EcoGene:EG12878" /db_xref="GeneID:947404" CDS 3055612..3055941 /gene="zapA" /locus_tag="b2910" /gene_synonym="ECK2905; JW2878; ygfE" /codon_start=1 /transl_table=11 /product="FtsZ stabilizer" /protein_id="NP_417386.1" /db_xref="GI:16130812" /db_xref="ASAP:ABE-0009554" /db_xref="UniProtKB/Swiss-Prot:P0ADS2" /db_xref="EcoGene:EG12878" /db_xref="GeneID:947404" /translation="MSAQPVDIQIFGRSLRVNCPPDQRDALNQAADDLNQRLQDLKER TRVTNTEQLVFIAALNISYELAQEKAKTRDYAASMEQRIRMLQQTIEQALLEQGRITE KTNQNFE" gene 3055983..3056165 /gene="ssrS" /locus_tag="b2911" /gene_synonym="ECK2906; JWR0067; ssr; ssrI" /db_xref="EcoGene:EG30099" /db_xref="GeneID:947405" ncRNA 3055983..3056165 /ncRNA_class="other" /gene="ssrS" /locus_tag="b2911" /gene_synonym="ECK2906; JWR0067; ssr; ssrI" /product="6S RNA inhibits RNA polymerase promoter binding" /note="template for RNA-directed pRNA synthesis by RNAP; mimics an open promoter" /function="2.2.6 information transfer; RNA related; rRNA, stable RNA" /function="7.1 location of gene products; cytoplasm" /function="modulates promoter use via interaction with RNA polymerase" /function="RNA; Ribosomal and stable RNAs" /db_xref="ASAP:ABE-0009556" /db_xref="EcoGene:EG30099" /db_xref="GeneID:947405" gene 3056241..3056789 /gene="fau" /locus_tag="b2912" /gene_synonym="ECK2907; JW2879; ygfA" /db_xref="EcoGene:EG11158" /db_xref="GeneID:945167" CDS 3056241..3056789 /gene="fau" /locus_tag="b2912" /gene_synonym="ECK2907; JW2879; ygfA" /function="putative enzyme; Not classified" /note="putative ligase" /codon_start=1 /transl_table=11 /product="5-formyltetrahydrofolate cyclo-ligase family protein" /protein_id="NP_417387.3" /db_xref="GI:49176282" /db_xref="ASAP:ABE-0009559" /db_xref="UniProtKB/Swiss-Prot:P0AC28" /db_xref="EcoGene:EG11158" /db_xref="GeneID:945167" /translation="MIRQRRRALTPEQQQEMGQQAATRMMTYPPVVMAHTVAVFLSFD GELDTQPLIEQLWRAGKRVYLPVLHPFSAGNLLFLNYHPQSELVMNRLKIHEPKLDVR DVLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHYKTQPVGYAHDCQLVEK LPVEEWDIPLPAVVTPSKVWEW" gene 3056849..3056988 /gene="sibC" /locus_tag="b4446" /gene_synonym="ECK2908; JWR0250; QUAD1c; rygC; t27" /db_xref="EcoGene:EG31159" /db_xref="GeneID:2847749" ncRNA 3056849..3056988 /ncRNA_class="antisense_RNA" /gene="sibC" /locus_tag="b4446" /gene_synonym="ECK2908; JWR0250; QUAD1c; rygC; t27" /product="sRNA antisense regulator of toxic IbsC protein" /note="identified in a large scale screen" /db_xref="ASAP:ABE-0047266" /db_xref="EcoGene:EG31159" /db_xref="GeneID:2847749" gene complement(3056890..3056949) /gene="ibsC" /locus_tag="b4665" /gene_synonym="ECK4480" /db_xref="EcoGene:EG14470" /db_xref="GeneID:7751627" CDS complement(3056890..3056949) /gene="ibsC" /locus_tag="b4665" /gene_synonym="ECK4480" /codon_start=1 /transl_table=11 /product="toxic membrane protein" /protein_id="YP_002791255.1" /db_xref="GI:226524746" /db_xref="UniProtKB/Swiss-Prot:C1P615" /db_xref="EcoGene:EG14470" /db_xref="GeneID:7751627" /translation="MMRLVIILIVLLLISFSAY" gene complement(3057178..3058410) /gene="serA" /locus_tag="b2913" /gene_synonym="ECK2909; JW2880" /db_xref="EcoGene:EG10944" /db_xref="GeneID:945258" CDS complement(3057178..3058410) /gene="serA" /locus_tag="b2913" /gene_synonym="ECK2909; JW2880" /EC_number="1.1.1.95" /function="enzyme; Amino acid biosynthesis: Serine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006564 - L-serine biosynthetic process" /codon_start=1 /transl_table=11 /product="D-3-phosphoglycerate dehydrogenase" /protein_id="NP_417388.1" /db_xref="GI:16130814" /db_xref="ASAP:ABE-0009561" /db_xref="UniProtKB/Swiss-Prot:P0A9T0" /db_xref="EcoGene:EG10944" /db_xref="GeneID:945258" /translation="MAKVSLEKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDD EQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVF NAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYG HIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTK NMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDP FTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPL HGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEK ALQAMKAIPGTIRARLLY" gene complement(3058666..3059325) /gene="rpiA" /locus_tag="b2914" /gene_synonym="ECK2910; JW5475; ygfC" /db_xref="EcoGene:EG11443" /db_xref="GeneID:947407" CDS complement(3058666..3059325) /gene="rpiA" /locus_tag="b2914" /gene_synonym="ECK2910; JW5475; ygfC" /EC_number="5.3.1.6" /function="enzyme; Central intermediary metabolism: Non-oxidative branch, pentose pathway" /experiment="N-terminus verified by Edman degradation: PMID 8366047,9298646,9600841,9740056" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0009052 - pentose-phosphate shunt, non-oxidative branch" /note="ribosephosphate isomerase, constitutive" /codon_start=1 /transl_table=11 /product="ribose 5-phosphate isomerase, constitutive" /protein_id="NP_417389.1" /db_xref="GI:16130815" /db_xref="ASAP:ABE-0009567" /db_xref="UniProtKB/Swiss-Prot:P0A7Z0" /db_xref="EcoGene:EG11443" /db_xref="GeneID:947407" /translation="MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKG QIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTR EKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQGV VTDNGNVILDVHGMEILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIV K" gene complement(3059381..3059701) /gene="yqfE" /locus_tag="b2915" /gene_synonym="ECK2911; JW2882" /pseudo /db_xref="EcoGene:EG13163" /db_xref="GeneID:946707" CDS complement(3059381..3059701) /gene="yqfE" /locus_tag="b2915" /gene_synonym="ECK2911; JW2882" /note="pseudogene, LysR family" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0009570" /db_xref="UniProtKB/Swiss-Prot:P64562" /db_xref="EcoGene:EG13163" /db_xref="GeneID:946707" gene 3059753..3060646 /gene="argP" /locus_tag="b2916" /gene_synonym="can; canR; ECK2912; iciA; JW2883" /db_xref="EcoGene:EG10490" /db_xref="GeneID:944867" CDS 3059753..3060646 /gene="argP" /locus_tag="b2916" /gene_synonym="can; canR; ECK2912; iciA; JW2883" /function="regulator; DNA - replication, repair, restriction/modification" /experiment="N-terminus verified by Edman degradation: PMID 2034653" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006261 - DNA-dependent DNA replication; GO:0006350 - transcription" /note="replication initiation inhibitor, binds to 13-mers at oriC" /codon_start=1 /transl_table=11 /product="transcriptional regulator for arginine transport and DNA replication genes; replication initiation inhibitor" /protein_id="NP_417391.1" /db_xref="GI:16130817" /db_xref="ASAP:ABE-0009574" /db_xref="UniProtKB/Swiss-Prot:P0A8S1" /db_xref="EcoGene:EG10490" /db_xref="GeneID:944867" /translation="MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLEN MFGQPLLVRTVPPRPTEQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNADSL ATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLG ALDYLFVSSKPFAEKYFPNGVTRSALLKAPVVAFDHLDDMHQAFLQQNFDLPPGSVPC HIVNSSEAFVQLARQGTTCCMIPHLQIEKELASGELIDLTPGLFQRRMLYWHRFAPES RMMRKVTDALLDYGHKVLRQD" repeat_region 3060660..3060680 /note="REP212 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 3060850..3062994 /gene="scpA" /locus_tag="b2917" /gene_synonym="ECK2913; JW2884; mcm; sbm; yliK" /db_xref="EcoGene:EG11444" /db_xref="GeneID:945576" CDS 3060850..3062994 /gene="scpA" /locus_tag="b2917" /gene_synonym="ECK2913; JW2884; mcm; sbm; yliK" /EC_number="5.4.99.2" /function="enzyme; Degradation of small molecules: Fatty acids" /GO_process="GO:0019395 - fatty acid oxidation" /note="methylmalonyl-CoA mutase (MCM)" /codon_start=1 /transl_table=11 /product="methylmalonyl-CoA mutase" /protein_id="NP_417392.1" /db_xref="GI:16130818" /db_xref="ASAP:ABE-0009577" /db_xref="UniProtKB/Swiss-Prot:P27253" /db_xref="EcoGene:EG11444" /db_xref="GeneID:945576" /translation="MSNVQEWQQLANKELSRREKTVDSLVHQTAEGIAIKPLYTEADL DNLEVTGTLPGLPPYVRGPRATMYTAQPWTIRQYAGFSTAKESNAFYRRNLAAGQKGL SVAFDLATHRGYDSDNPRVAGDVGKAGVAIDTVEDMKVLFDQIPLDKMSVSMTMNGAV LPVLAFYIVAAEEQGVTPDKLTGTIQNDILKEYLCRNTYIYPPKPSMRIIADIIAWCS GNMPRFNTISISGYHMGEAGANCVQQVAFTLADGIEYIKAAISAGLKIDDFAPRLSFF FGIGMDLFMNVAMLRAARYLWSEAVSGFGAQDPKSLALRTHCQTSGWSLTEQDPYNNV IRTTIEALAATLGGTQSLHTNAFDEALGLPTDFSARIARNTQIIIQEESELCRTVDPL AGSYYIESLTDQIVKQARAIIQQIDEAGGMAKAIEAGLPKRMIEEASAREQSLIDQGK RVIVGVNKYKLDHEDETDVLEIDNVMVRNEQIASLERIRATRDDAAVTAALNALTHAA QHNENLLAAAVNAARVRATLGEISDALEVAFDRYLVPSQCVTGVIAQSYHQSEKSASE FDAIVAQTEQFLADNGRRPRILIAKMGQDGHDRGAKVIASAYSDLGFDVDLSPMFSTP EEIARLAVENDVHVVGASSLAAGHKTLIPELVEALKKWGREDICVVAGGVIPPQDYAF LQERGVAAIYGPGTPMLDSVRDVLNLISQHHD" gene 3062987..3063982 /gene="argK" /locus_tag="b2918" /gene_synonym="ECK2914; JW2885; meaB; scpK?; ygfD" /db_xref="EcoGene:EG11445" /db_xref="GeneID:947412" CDS 3062987..3063982 /gene="argK" /locus_tag="b2918" /gene_synonym="ECK2914; JW2885; meaB; scpK?; ygfD" /function="phenotype; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="membrane ATPase/protein kinase" /protein_id="NP_417393.1" /db_xref="GI:16130819" /db_xref="ASAP:ABE-0009579" /db_xref="UniProtKB/Swiss-Prot:P27254" /db_xref="EcoGene:EG11445" /db_xref="GeneID:947412" /translation="MINEATLAESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLL DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSIL GDKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQS ETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTASGRLQQVRQQQSVE WLRKQTEEEVLNHLFANEDFDRYYRQTLLAVKNNTLSPRTGLRQLSEFIQTQYFD" gene 3063993..3064778 /gene="scpB" /locus_tag="b2919" /gene_synonym="ECK2915; JW2886; mmcD; ygfG" /db_xref="EcoGene:EG12972" /db_xref="GeneID:947408" CDS 3063993..3064778 /gene="scpB" /locus_tag="b2919" /gene_synonym="ECK2915; JW2886; mmcD; ygfG" /EC_number="4.1.1.41" /function="enzyme; Not classified" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="methylmalonyl-CoA decarboxylase, biotin-independent" /protein_id="NP_417394.4" /db_xref="GI:90111512" /db_xref="ASAP:ABE-0009581" /db_xref="UniProtKB/Swiss-Prot:P52045" /db_xref="EcoGene:EG12972" /db_xref="GeneID:947408" /translation="MSYQYVNVVTINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISM VEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKEL IFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGE AHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFVGH" gene 3064802..3066280 /gene="scpC" /locus_tag="b2920" /gene_synonym="ECK2916; JW2887; ygfH" /db_xref="EcoGene:EG12973" /db_xref="GeneID:947402" CDS 3064802..3066280 /gene="scpC" /locus_tag="b2920" /gene_synonym="ECK2916; JW2887; ygfH" /EC_number="2.8.3.-" /function="enzyme; Not classified" /note="putative coenzyme A transferase" /codon_start=1 /transl_table=11 /product="propionyl-CoA:succinate CoA transferase" /protein_id="NP_417395.1" /db_xref="GI:16130821" /db_xref="ASAP:ABE-0009583" /db_xref="UniProtKB/Swiss-Prot:P52043" /db_xref="EcoGene:EG12973" /db_xref="GeneID:947402" /translation="METQWTRMTANEAAEIIQHNDMVAFSGFTPAGSPKALPTAIARR ANEQHEAKKPYQIRLLTGASISAAADDVLSDADAVSWRAPYQTSSGLRKKINQGAVSF VDLHLSEVAQMVNYGFFGDIDVAVIEASALAPDGRVWLTSGIGNAPTWLLRAKKVIIE LNHYHDPRVAELADIVIPGAPPRRNSVSIFHAMDRVGTRYVQIDPKKIVAVVETNLPD AGNMLDKQNPMCQQIADNVVTFLLQEMAHGRIPPEFLPLQSGVGNINNAVMARLGENP VIPPFMMYSEVLQESVVHLLETGKISGASASSLTISADSLRKIYDNMDYFASRIVLRP QEISNNPEIIRRLGVIALNVGLEFDIYGHANSTHVAGVDLMNGIGGSGDFERNAYLSI FMAPSIAKEGKISTVVPMCSHVDHSEHSVKVIITEQGIADLRGLSPLQRARTIIDNCA HPMYRDYLHRYLENAPGGHIHHDLSHVFDLHRNLIATGSMLG" gene complement(3066277..3067173) /gene="ygfI" /locus_tag="b2921" /gene_synonym="ECK2917; JW5476" /db_xref="EcoGene:EG12974" /db_xref="GeneID:947401" CDS complement(3066277..3067173) /gene="ygfI" /locus_tag="b2921" /gene_synonym="ECK2917; JW5476" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="putative DNA-binding transcriptional regulator" /protein_id="NP_417396.4" /db_xref="GI:90111513" /db_xref="ASAP:ABE-0009585" /db_xref="UniProtKB/Swiss-Prot:P52044" /db_xref="EcoGene:EG12974" /db_xref="GeneID:947401" /translation="MDIFISKKMRNFILLAQTNNIARAAEKIHMTASPFGKSIAALEE QIGYTLFTRKDNNISLNKAGQELYQKLFPVYQRLSAIDNEIHNSGRRSREIVIGIDNT YPTIIFDQLISLGDKYEGVTAQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELEN LTISELPPLRLGFLVSRRYEERQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGIN PTIIYRPYSFMAKISAVERGHFLTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSI RNHRYTATMLQHIAEDRDGTSH" gene complement(3067340..3068080) /gene="yggE" /locus_tag="b2922" /gene_synonym="ECK2918; JW2889" /db_xref="EcoGene:EG11244" /db_xref="GeneID:947398" CDS complement(3067340..3068080) /gene="yggE" /locus_tag="b2922" /gene_synonym="ECK2918; JW2889" /function="phenotype; Not classified" /note="putative actin" /codon_start=1 /transl_table=11 /product="oxidative stress defense protein" /protein_id="NP_417397.1" /db_xref="GI:16130823" /db_xref="ASAP:ABE-0009588" /db_xref="UniProtKB/Swiss-Prot:P0ADS6" /db_xref="EcoGene:EG11244" /db_xref="GeneID:947398" /translation="MKFKVIALAALMGISGMAAQANELPDGPHIVTSGTASVDAVPDI ATLAIEVNVAAKDAATAKKQADERVAQYISFLELNQIAKKDISSANLRTQPDYDYQDG KSILKGYRAVRTVEVTLRQLDKLNSLLDGALKAGLNEIRSVSLGVAQPDAYKDKARKA AIDNAIHQAQELANGFHRKLGPVYSVRYHVSNYQPSPMVRMMKADAAPVSAQETYEQA AIQFDDQVDVVFQLEPVDQQPAKTPAAQ" gene complement(3068173..3068808) /gene="argO" /locus_tag="b2923" /gene_synonym="ECK2919; JW2890; yggA" /db_xref="EcoGene:EG11159" /db_xref="GeneID:947418" CDS complement(3068173..3068808) /gene="argO" /locus_tag="b2923" /gene_synonym="ECK2919; JW2890; yggA" /codon_start=1 /transl_table=11 /product="arginine transporter" /protein_id="NP_417398.1" /db_xref="GI:16130824" /db_xref="ASAP:ABE-0009591" /db_xref="UniProtKB/Swiss-Prot:P11667" /db_xref="EcoGene:EG11159" /db_xref="GeneID:947418" /translation="MFSYYFQGLALGAAMILPLGPQNAFVMNQGIRRQYHIMIALLCA ISDLVLICAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGAFKTAMSSNIELASAE VMKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQLDVEPKRWFALGTISASFLWF FGLALLAAWLAPRLRTAKAQRIINLVVGCVMWFIALQLARDGIAHAQALFS" gene complement(3068947..3069807) /gene="mscS" /locus_tag="b2924" /gene_synonym="ECK2920; JW2891; yggB" /db_xref="EcoGene:EG11160" /db_xref="GeneID:947416" CDS complement(3068947..3069807) /gene="mscS" /locus_tag="b2924" /gene_synonym="ECK2920; JW2891; yggB" /function="transport; Transport of small molecules: Other" /codon_start=1 /transl_table=11 /product="mechanosensitive channel protein, small conductance" /protein_id="NP_417399.1" /db_xref="GI:16130825" /db_xref="ASAP:ABE-0009595" /db_xref="UniProtKB/Swiss-Prot:P0C0S1" /db_xref="EcoGene:EG11160" /db_xref="GeneID:947416" /translation="MEDLNVVDSINGAGSWLVANQALLLSYAVNIVAALAIIIVGLII ARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA AGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADG KIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKD REMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVN FKRVKEDKAA" repeat_region 3070003..3070100 /note="RIP213 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(3070165..3071244) /gene="fbaA" /locus_tag="b2925" /gene_synonym="ald; ECK2921; fba; fda; JW2892" /db_xref="EcoGene:EG10282" /db_xref="GeneID:947415" CDS complement(3070165..3071244) /gene="fbaA" /locus_tag="b2925" /gene_synonym="ald; ECK2921; fba; fda; JW2892" /EC_number="4.1.2.13" /function="enzyme; Energy metabolism, carbon: Glycolysis" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="fructose-bisphosphate aldolase, class II" /protein_id="NP_417400.1" /db_xref="GI:16130826" /db_xref="ASAP:ABE-0009600" /db_xref="UniProtKB/Swiss-Prot:P0AB71" /db_xref="EcoGene:EG10282" /db_xref="GeneID:947415" /translation="MSKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSIN AVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYG VPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSK YLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFT IAASFGNVHGVYKPGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIK DSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVW LRAGQTSMIARLEKAFQELNAIDVL" gene complement(3071459..3072622) /gene="pgk" /locus_tag="b2926" /gene_synonym="ECK2922; JW2893" /db_xref="EcoGene:EG10703" /db_xref="GeneID:947414" CDS complement(3071459..3072622) /gene="pgk" /locus_tag="b2926" /gene_synonym="ECK2922; JW2893" /EC_number="2.7.2.3" /function="enzyme; Energy metabolism, carbon: Glycolysis" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006094 - gluconeogenesis; GO:0006096 - glycolysis" /codon_start=1 /transl_table=11 /product="phosphoglycerate kinase" /protein_id="NP_417401.1" /db_xref="GI:16130827" /db_xref="ASAP:ABE-0009605" /db_xref="UniProtKB/Swiss-Prot:P0A799" /db_xref="EcoGene:EG10703" /db_xref="GeneID:947414" /translation="MSVIKMTDLDLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTI ELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDGVDVA EGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADV ACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIA NTFIAAQGHDVGKSLYEADLVDEAKRLLTTCNIPVPSDVRVATEFSETAPATLKSVND VKADEQILDIGDASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEERAKK" gene complement(3072672..3073691) /gene="epd" /locus_tag="b2927" /gene_synonym="ECK2923; gapB; JW2894" /db_xref="EcoGene:EG10368" /db_xref="GeneID:947413" CDS complement(3072672..3073691) /gene="epd" /locus_tag="b2927" /gene_synonym="ECK2923; gapB; JW2894" /EC_number="1.2.1.9" /function="enzyme; Central intermediary metabolism" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006094 - gluconeogenesis; GO:0008615 - pyridoxine biosynthetic process" /codon_start=1 /transl_table=11 /product="D-erythrose 4-phosphate dehydrogenase" /protein_id="NP_417402.1" /db_xref="GI:16130828" /db_xref="ASAP:ABE-0009607" /db_xref="UniProtKB/Swiss-Prot:P0A9B6" /db_xref="EcoGene:EG10368" /db_xref="GeneID:947413" /translation="MTVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGM AHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGV YGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCI IPVIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAG ITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIV DYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA TVAFR" gene complement(3073976..3074689) /gene="yggC" /locus_tag="b2928" /gene_synonym="ECK2924; JW2895" /db_xref="EcoGene:EG11161" /db_xref="GeneID:947419" CDS complement(3073976..3074689) /gene="yggC" /locus_tag="b2928" /gene_synonym="ECK2924; JW2895" /function="putative enzyme; Not classified" /note="putative kinase" /codon_start=1 /transl_table=11 /product="putative PanK family P-loop kinase" /protein_id="NP_417403.1" /db_xref="GI:16130829" /db_xref="ASAP:ABE-0009610" /db_xref="UniProtKB/Swiss-Prot:P11664" /db_xref="EcoGene:EG11161" /db_xref="GeneID:947419" /translation="MKIELTVNGLKIQAQYQNEEIENVHKPLLHMLAALQTVNPQRRT VVFLCAPPGTGKSTLTTFWEYLAQQDPELPAIQTLPMDGFHHYNSWLDAHQLRPFKGA PETFDVAKLTENLRQVVEGDCTWPQYDRQKHDPVEDALHVTAPLVIVEGNWLLLDDEK WLELASFCDFSIFIHAPAQILRERLISRKIAGGLTRQVAEAFYARTDGPNVERVLMNS RQANLIVEMTEEGRYHFTS" gene complement(3074686..3075195) /gene="yggD" /locus_tag="b2929" /gene_synonym="ECK2925; JW2896" /db_xref="EcoGene:EG11162" /db_xref="GeneID:946861" CDS complement(3074686..3075195) /gene="yggD" /locus_tag="b2929" /gene_synonym="ECK2925; JW2896" /function="putative regulator; Not classified" /note="putative transcriptional regulator" /codon_start=1 /transl_table=11 /product="MtlR family putative transcriptional repressor" /protein_id="NP_417404.1" /db_xref="GI:16130830" /db_xref="ASAP:ABE-0009612" /db_xref="UniProtKB/Swiss-Prot:P11663" /db_xref="EcoGene:EG11162" /db_xref="GeneID:946861" /translation="MATLTEDDVLEQLDAQDNLFSFMKTAHTILLQGIRQFLPSLFVD NDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQD ETPGFADDMTWDFISNVNSITRNAMLYDALKAMKFADFSVWSEARFSGMVKTALTLAV TTTLKELTP" gene complement(3075217..3076182) /gene="yggF" /locus_tag="b2930" /gene_synonym="ECK2926; JW2897; yggK" /db_xref="EcoGene:EG11245" /db_xref="GeneID:947410" CDS complement(3075217..3076182) /gene="yggF" /locus_tag="b2930" /gene_synonym="ECK2926; JW2897; yggK" /codon_start=1 /transl_table=11 /product="fructose 1,6 bisphosphatase isozyme" /protein_id="NP_417405.1" /db_xref="GI:16130831" /db_xref="ASAP:ABE-0009615" /db_xref="UniProtKB/Swiss-Prot:P21437" /db_xref="EcoGene:EG11245" /db_xref="GeneID:947410" /translation="MMSLAWPLFRVTEQAALAAWPQTGCGDKNKIDGLAVTAMRQALN DVAFRGRVVIGEGEIDHAPMLWIGEEVGKGDGPEVDIAVDPIEGTRMVAMGQSNALAV MAFAPRDSLLHAPDMYMKKLVVNRLAAGAIDLSLPLTDNLRNVAKALGKPLDKLRMVT LDKPRLSAAIEEATQLGVKVFALPDGDVAASVLTCWQDNPYDVMYTIGGAPEGVISAC AVKALGGDMQAELIDFCQAKGDYTENRQIAEQERKRCKAMGVDVNRVYSLDELVRGND ILFSATGVTGGELVNGIQQTANGVRTQTLLIGGADQTCNIIDSLH" gene complement(3076179..3077456) /gene="yggP" /locus_tag="b4465" /gene_synonym="ECK2927; JW5477" /db_xref="EcoGene:EG12976" /db_xref="GeneID:2847686" CDS complement(3076179..3077456) /gene="yggP" /locus_tag="b4465" /gene_synonym="ECK2927; JW5477" /codon_start=1 /transl_table=11 /product="putative Zn-binding dehydrogenase" /protein_id="YP_026187.1" /db_xref="GI:49176285" /db_xref="ASAP:ABE-0174095" /db_xref="UniProtKB/Swiss-Prot:P52048" /db_xref="EcoGene:EG12976" /db_xref="GeneID:2847686" /translation="MKTKVAAIYGKRDVRLRVFELPEITDNELLVSVISDSVCLSTWK AALLGSEHKRVPDDLENHPVITGHECAGVIVEVGKNLTGKYKKGQRFVLQPAMGLPSG YSAGYSYEYFGGNATYMIIPEIAINLGCVLPYHGSYFAAASLAEPMCCIIGAYHANYH TTQYVYEHRMGVKPGGNIALLACAGPMGIGAIDYAINGGIQPSRVVVVDIDDKRLAQV QKLLPVELAASKGIELVYVNTKGMSDPVQMLRALTGDAGFDDIFVYAAVPAVVEMADE LLAEDGCLNFFAGPTDKNFKVPFNFYNVHYNSTHVVGTSGGSTDDMKEAIALSATGQL QPSFMVTHIGGLDAVPETVLNLPDIPGGKKLIYNGVTMPLTAIADFAEKGKTDPLFKE LARLVEETHGIWNEQAEKYLLAQFGVDIGEAAQ" gene complement(3077471..3078859) /gene="cmtA" /locus_tag="b2933" /gene_synonym="ECK2928; JW2900" /db_xref="EcoGene:EG11792" /db_xref="GeneID:945256" CDS complement(3077471..3078859) /gene="cmtA" /locus_tag="b2933" /gene_synonym="ECK2928; JW2900" /EC_number="2.7.1.69" /function="enzyme; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="PTS system, mannitol-specific enzyme II component, cryptic" /codon_start=1 /transl_table=11 /product="putative mannitol-specific PTS IIB and IIC components" /protein_id="NP_417408.1" /db_xref="GI:16130834" /db_xref="ASAP:ABE-0009621" /db_xref="UniProtKB/Swiss-Prot:P69826" /db_xref="EcoGene:EG11792" /db_xref="GeneID:945256" /translation="MENKSARAKVQAFGGFLTAMVIPNIGAFIAWGFITALFIPTGWL PNEHFAKIVGPMITYLLPVMIGSTGGHLVGGKRGAVMGGIGTIGVIVGAEIPMFLGSM IMGPLGGLVIKYVDKALEKRIPAGFEMVINNFSLGIAGMLLCLLGFEVIGPAVLIANT FVKECIEALVHAGYLPLLSVINEPAKVLFLNNAIDQGVYYPLGMQQASVNGKSIFFMV ASNPGPGLGLLLAFTLFGKGMSKRSAPGAMIIHFLGGIHELYFPYVLMKPLTIIAMIA GGMSGTWMFNLLDGGLVAGPSPGSIFAYLALTPKGSFLATIAGVTVGTLVSFAITSLI LKMEKTVETESEDEFAQSANAVKAMKQEGAFSLSRVKRIAFVCDAGMGSSAMGATTFR KRLEKAGLAIEVKHYAIENVPADADIVVTHASLEGRVKRVTDKPLILINNYIGDPKLD TLFNQLTAEHKH" gene complement(3078887..3079330) /gene="cmtB" /locus_tag="b2934" /gene_synonym="ECK2929; JW2901; tolM" /db_xref="EcoGene:EG11791" /db_xref="GeneID:945125" CDS complement(3078887..3079330) /gene="cmtB" /locus_tag="b2934" /gene_synonym="ECK2929; JW2901; tolM" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="PTS system, mannitol-specific enzyme II component, cryptic" /codon_start=1 /transl_table=11 /product="putative mannitol-specific enzyme IIA component of PTS" /protein_id="NP_417409.1" /db_xref="GI:16130835" /db_xref="ASAP:ABE-0009623" /db_xref="UniProtKB/Swiss-Prot:P69824" /db_xref="EcoGene:EG11791" /db_xref="GeneID:945125" /translation="MRLSDYFPESSISVIHSAKDWQEAIDFSMVSLLDKNYISENYIQ AIKDSTINNGPYYILAPGVAMPHARPECGALKTGMSLTLLEQGVYFPGNDEPIKLLIG LSAADADSHIGAIQALSELLCEEEILEQLLTASSEKQLADIISRG" gene complement(3079644..3081635) /gene="tktA" /locus_tag="b2935" /gene_synonym="ECK2930; JW5478; tkt" /db_xref="EcoGene:EG11427" /db_xref="GeneID:947420" CDS complement(3079644..3081635) /gene="tktA" /locus_tag="b2935" /gene_synonym="ECK2930; JW5478; tkt" /EC_number="2.2.1.1" /function="enzyme; Central intermediary metabolism: Non-oxidative branch, pentose pathway" /experiment="N-terminus verified by Edman degradation: PMID 1537815" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0015949 - nucleobase, nucleoside and nucleotide interconversion; GO:0009052 - pentose-phosphate shunt, non-oxidative branch" /note="transketolase 1 isozyme" /codon_start=1 /transl_table=11 /product="transketolase 1, thiamine triphosphate-binding" /protein_id="YP_026188.1" /db_xref="GI:49176286" /db_xref="ASAP:ABE-0009625" /db_xref="UniProtKB/Swiss-Prot:P27302" /db_xref="EcoGene:EG11427" /db_xref="GeneID:947420" /translation="MSSRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDF LKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPE VGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMME GISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDG HDAASIKRAVEEARAVTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQ LGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMP SDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSG SKAINEDAAGNYIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAAL MKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVE RQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCAGQPELIFIATGSEVELAVA AYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVG LNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAKELL" gene 3081913..3082671 /gene="loiP" /locus_tag="b2936" /gene_synonym="ECK2931; JW2903; yggG" /db_xref="EcoGene:EG11291" /db_xref="GeneID:945173" CDS 3081913..3082671 /gene="loiP" /locus_tag="b2936" /gene_synonym="ECK2931; JW2903; yggG" /function="enzyme; Degradation of proteins, peptides, glycopeptides" /codon_start=1 /transl_table=11 /product="Phe-Phe periplasmic metalloprotease, OM lipoprotein; low salt-inducible; Era-binding heat shock protein" /protein_id="NP_417411.2" /db_xref="GI:90111514" /db_xref="ASAP:ABE-0009629" /db_xref="UniProtKB/Swiss-Prot:P25894" /db_xref="EcoGene:EG11291" /db_xref="GeneID:945173" /translation="MKIRALLVAMSVATVLTGCQNMDSNGLLSSGAEAFQAYSLSDAQ VKTLSDQACQEMDSKATIAPANSEYAKRLTTIANALGNNINGQPVNYKVYMAKDVNAF AMANGCIRVYSGLMDMMTDNEVEAVIGHEMGHVALGHVKKGMQVALGTNAVRVAAASA GGIVGSLSQSQLGNLGEKLVNSQFSQRQEAEADDYSYDLLRQRGISPAGLATSFEKLA KLEEGRQSSMFDDHPASAERAQHIRDRMSADGIK" repeat_region 3082690..3082836 /note="REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences" gene complement(3082877..3083797) /gene="speB" /locus_tag="b2937" /gene_synonym="ECK2932; JW2904" /db_xref="EcoGene:EG10960" /db_xref="GeneID:947715" CDS complement(3082877..3083797) /gene="speB" /locus_tag="b2937" /gene_synonym="ECK2932; JW2904" /EC_number="3.5.3.11" /function="enzyme; Central intermediary metabolism: Polyamine biosynthesis" /GO_process="GO:0006596 - polyamine biosynthetic process" /codon_start=1 /transl_table=11 /product="agmatinase" /protein_id="NP_417412.1" /db_xref="GI:16130838" /db_xref="ASAP:ABE-0009632" /db_xref="UniProtKB/Swiss-Prot:P60651" /db_xref="EcoGene:EG10960" /db_xref="GeneID:947715" /translation="MSTLGHQYDNSLVSNAFGFLRLPMNFQPYDSDADWVITGVPFDM ATSGRAGGRHGPAAIRQVSTNLAWEHNRFPWNFDMRERLNVVDCGDLVYAFGDAREMS EKLQAHAEKLLAAGKRMLSFGGDHFVTLPLLRAHAKHFGKMALVHFDAHTDTYANGCE FDHGTMFYTAPKEGLIDPNHSVQIGIRTEFDKDNGFTVLDACQVNDRSVDDVIAQVKQ IVGDMPVYLTFDIDCLDPAFAPGTGTPVIGGLTSDRAIKLVRGLKDLNIVGMDVVEVA PAYDQSEITALAAATLALEMLYIQAAKKGE" gene complement(3083935..3085911) /gene="speA" /locus_tag="b2938" /gene_synonym="ECK2933; JW2905" /db_xref="EcoGene:EG10959" /db_xref="GeneID:947432" CDS complement(3083935..3085911) /gene="speA" /locus_tag="b2938" /gene_synonym="ECK2933; JW2905" /EC_number="4.1.1.19" /function="enzyme; Central intermediary metabolism: Polyamine biosynthesis" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006596 - polyamine biosynthetic process" /note="biosynthetic arginine decarboxylase" /codon_start=1 /transl_table=11 /product="biosynthetic arginine decarboxylase, PLP-binding" /protein_id="NP_417413.1" /db_xref="GI:16130839" /db_xref="ASAP:ABE-0009634" /db_xref="UniProtKB/Swiss-Prot:P21170" /db_xref="EcoGene:EG10959" /db_xref="GeneID:947432" /translation="MSDDMSMGLPSSAGEHGVLRSMQEVAMSSQEASKMLRTYNIAWW GNNYYDVNELGHISVCPDPDVPEARVDLAQLVKTREAQGQRLPALFCFPQILQHRLRS INAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLA HAGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPR LGVRARLASQGSGKWQSSGGEKSKFGLAATQVLQLVETLREAGRLDSLQLLHFHLGSQ MANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNE YANNIIWAIGDACEENGLPHPTVITESGRAVTAHHTVLVSNIIGVERNEYTVPTAPAE DAPRALQSMWETWQEMHEPGTRRSLREWLHDSQMDLHDIHIGYSSGIFSLQERAWAEQ LYLSMCHEVQKQLDPQNRAHRPIIDELQERMADKMYVNFSLFQSMPDAWGIDQLFPVL PLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEYDPENPPMLGFFMVG AYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELSDEGDTVADMLQYVQLDPKTLLTQF RDQVKKTDLDAELQQQFLEEFEAGLYGYTYLEDE" gene complement(3085920..3086051) /gene="yqgB" /locus_tag="b2939" /gene_synonym="ECK2934; JW2906" /db_xref="EcoGene:EG13164" /db_xref="GeneID:947433" CDS complement(3085920..3086051) /gene="yqgB" /locus_tag="b2939" /gene_synonym="ECK2934; JW2906" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_417414.2" /db_xref="GI:145698307" /db_xref="ASAP:ABE-0009638" /db_xref="UniProtKB/Swiss-Prot:P64567" /db_xref="EcoGene:EG13164" /db_xref="GeneID:947433" /translation="MKKKPVAQLERQHSLLENPCAYGLLSQFQAAIVVNCFTLNKII" gene 3086187..3086402 /gene="yqgC" /locus_tag="b2940" /gene_synonym="ECK2935; JW2907" /db_xref="EcoGene:EG13165" /db_xref="GeneID:945052" CDS 3086187..3086402 /gene="yqgC" /locus_tag="b2940" /gene_synonym="ECK2935; JW2907" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_417415.1" /db_xref="GI:16130841" /db_xref="ASAP:ABE-0009643" /db_xref="UniProtKB/Swiss-Prot:P64570" /db_xref="EcoGene:EG13165" /db_xref="GeneID:945052" /translation="MGITSAGMQSRDAECGERIFTRTVRQVKQQTTVHYFVSPPRPPV KTNPQAKTLISTRLEVATRKKRRVLFI" gene 3086706..3087860 /gene="metK" /locus_tag="b2942" /gene_synonym="ECK2937; JW2909; metX" /db_xref="EcoGene:EG10589" /db_xref="GeneID:945389" CDS 3086706..3087860 /gene="metK" /locus_tag="b2942" /gene_synonym="ECK2937; JW2909; metX" /EC_number="2.5.1.6" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006556 - S-adenosylmethionine biosynthetic process" /note="methionine adenosyltransferase 1 (AdoMet synthetase); methyl and propylamine donor, corepressor of met genes" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine synthetase" /protein_id="NP_417417.1" /db_xref="GI:16130843" /db_xref="ASAP:ABE-0009650" /db_xref="UniProtKB/Swiss-Prot:P0A817" /db_xref="EcoGene:EG10589" /db_xref="GeneID:945389" /translation="MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACET YVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPD INQGVDRADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPW LRPDAKSQVTFQYDDGKIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLT SATKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAA YAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFF DLRPYGLIQMLDLLHPIYKETAAYGHFGREHFPWEKTDKAQLLRDAAGLK" repeat_region 3087912..3087937 /note="REP215 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 3088284..3089678 /gene="galP" /locus_tag="b2943" /gene_synonym="ECK2938; JW2910; Pgal" /db_xref="EcoGene:EG12148" /db_xref="GeneID:947434" CDS 3088284..3089678 /gene="galP" /locus_tag="b2943" /gene_synonym="ECK2938; JW2910; Pgal" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="galactose-proton symport of transport system" /codon_start=1 /transl_table=11 /product="D-galactose transporter" /protein_id="NP_417418.1" /db_xref="GI:16130844" /db_xref="ASAP:ABE-0009654" /db_xref="UniProtKB/Swiss-Prot:P0AEP1" /db_xref="EcoGene:EG12148" /db_xref="GeneID:947434" /translation="MPDAKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIA DEFQITSHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAA PNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLS DTAFSYTGAWRWMLGVIIIPAILLLIGVFFLPDSPRWFAAKRRFVDAERVLLRLRDTS AEAKRELDEIRESLQVKQSGWALFKENSNFRRAVFLGVLLQVMQQFTGMNVIMYYAPK IFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVL GTMMHIGIHSPSAQYFAIAMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTA TNWIANMIVGATFLTMLNTLGNANTFWVYAALNVLFILLTLWLVPETKHVSLEHIERN LMKGRKLREIGAHD" gene 3089755..3090252 /gene="yggI" /locus_tag="b2944" /gene_synonym="ECK2939; JW2911; sprT" /db_xref="EcoGene:EG12122" /db_xref="GeneID:947443" CDS 3089755..3090252 /gene="yggI" /locus_tag="b2944" /gene_synonym="ECK2939; JW2911; sprT" /codon_start=1 /transl_table=11 /product="Zn-dependent metalloprotease-related protein" /protein_id="NP_417419.1" /db_xref="GI:16130845" /db_xref="ASAP:ABE-0009657" /db_xref="UniProtKB/Swiss-Prot:P39902" /db_xref="EcoGene:EG12122" /db_xref="GeneID:947443" /translation="MKTSRLPIAIQQAVMRRLREKLAQANLKLGRNYPEPKLSYTQRG TSAGTAWLESYEIRLNPVLLLENSEAFIEEVVPHELAHLLVWKHFGRVAPHGKEWKWM MENVLGVPARRTHQFELQSVRRNTFPYRCKCQEHQLTVRRHNRVVRGEAVYRCVHCGE QLVAK" gene 3090347..3091054 /gene="endA" /locus_tag="b2945" /gene_synonym="ECK2940; JW2912" /db_xref="EcoGene:EG11336" /db_xref="GeneID:949092" CDS 3090347..3091054 /gene="endA" /locus_tag="b2945" /gene_synonym="ECK2940; JW2912" /EC_number="3.1.21.1" /function="enzyme; Degradation of DNA" /GO_process="GO:0006308 - DNA catabolic process" /codon_start=1 /transl_table=11 /product="DNA-specific endonuclease I" /protein_id="NP_417420.1" /db_xref="GI:16130846" /db_xref="ASAP:ABE-0009661" /db_xref="UniProtKB/Swiss-Prot:P25736" /db_xref="EcoGene:EG11336" /db_xref="GeneID:949092" /translation="MYRYLSIAAVVLSAAFSGPALAEGINSFSQAKAAAVKVHADAPG TFYCGCKINWQGKKGVVDLQSCGYQVRKNENRASRVEWEHVVPAWQFGHQRQCWQDGG RKNCAKDPVYRKMESDMHNLQPSVGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKEK AAEPPARARGAIARTYFYMRDQYNLTLSRQQTQLFNAWNKMYPVTDWECERDERIAKV QGNHNPYVQRACQARKS" gene 3091134..3091865 /gene="rsmE" /locus_tag="b2946" /gene_synonym="ECK2941; JW2913; yggJ" /db_xref="EcoGene:EG12366" /db_xref="GeneID:945816" CDS 3091134..3091865 /gene="rsmE" /locus_tag="b2946" /gene_synonym="ECK2941; JW2913; yggJ" /function="enzyme; rRNA modification" /codon_start=1 /transl_table=11 /product="16S rRNA m(3)U1498 methyltransferase, SAM-dependent" /protein_id="NP_417421.4" /db_xref="GI:90111515" /db_xref="ASAP:ABE-0009665" /db_xref="UniProtKB/Swiss-Prot:P0AGL7" /db_xref="EcoGene:EG12366" /db_xref="GeneID:945816" /translation="MRIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFD GSNQVFDAEITSASKKSVEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIEL GVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWC AEQDEGLKLNLHPRASNSINTLPLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLG PRVLRTETTALTAITALQVRFGDLG" gene 3091878..3092828 /gene="gshB" /locus_tag="b2947" /gene_synonym="ECK2942; gsh-II; JW2914" /db_xref="EcoGene:EG10419" /db_xref="GeneID:947445" CDS 3091878..3092828 /gene="gshB" /locus_tag="b2947" /gene_synonym="ECK2942; gsh-II; JW2914" /EC_number="6.3.2.3" /function="enzyme; Biosynthesis of cofactors, carriers: Thioredoxin, glutaredoxin, glutathione" /experiment="N-terminus verified by Edman degradation: PMID 6393055" /GO_process="GO:0006750 - glutathione biosynthetic process" /codon_start=1 /transl_table=11 /product="glutathione synthetase" /protein_id="NP_417422.1" /db_xref="GI:16130848" /db_xref="ASAP:ABE-0009667" /db_xref="UniProtKB/Swiss-Prot:P04425" /db_xref="EcoGene:EG10419" /db_xref="GeneID:947445" /translation="MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLY LINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYIL ERAEEKGTLIVNKPQSLRDCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILK PLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEP VPYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIG DRLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQQQ" gene 3092937..3093500 /gene="yqgE" /locus_tag="b2948" /gene_synonym="ECK2943; JW2915" /db_xref="EcoGene:EG13289" /db_xref="GeneID:947442" CDS 3092937..3093500 /gene="yqgE" /locus_tag="b2948" /gene_synonym="ECK2943; JW2915" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_417423.4" /db_xref="GI:90111516" /db_xref="ASAP:ABE-0009669" /db_xref="UniProtKB/Swiss-Prot:P0A8W5" /db_xref="EcoGene:EG13289" /db_xref="GeneID:947442" /translation="MNLQHHFLIAMPALQDPIFRRSVVYICEHNTNGAMGIIVNKPLE NLKIEGILEKLKITPEPRDESIRLDKPVMLGGPLAEDRGFILHTPPSNFASSIRISDN TVMTTSRDVLETLGTDKQPSDVLVALGYASWEKGQLEQEILDNAWLTAPADLNILFKT PIADRWREAAKLIGVDILTMPGVAGHA" gene 3093500..3093916 /gene="yqgF" /locus_tag="b2949" /gene_synonym="ECK2944; JW2916" /db_xref="EcoGene:EG13290" /db_xref="GeneID:947439" CDS 3093500..3093916 /gene="yqgF" /locus_tag="b2949" /gene_synonym="ECK2944; JW2916" /codon_start=1 /transl_table=11 /product="putative Holliday junction resolvase" /protein_id="NP_417424.1" /db_xref="GI:16130850" /db_xref="ASAP:ABE-0009672" /db_xref="UniProtKB/Swiss-Prot:P0A8I1" /db_xref="EcoGene:EG13290" /db_xref="GeneID:947439" /translation="MSGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNI IERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTVE ARSGLFEQGGYRALNKGKVDSASAVIILESYFEQGY" repeat_region 3093966..3094090 /note="REP216 (repetitive extragenic palindromic) element; contains 3 REP sequences" gene complement(3094100..3095080) /gene="yggR" /locus_tag="b2950" /gene_synonym="ECK2945; JW2917" /db_xref="EcoGene:EG12978" /db_xref="GeneID:947430" CDS complement(3094100..3095080) /gene="yggR" /locus_tag="b2950" /gene_synonym="ECK2945; JW2917" /function="putative transport; Not classified" /note="putative protein transport" /codon_start=1 /transl_table=11 /product="putative PilT family AAA+ ATPase" /protein_id="NP_417425.2" /db_xref="GI:90111517" /db_xref="ASAP:ABE-0009675" /db_xref="UniProtKB/Swiss-Prot:P52052" /db_xref="EcoGene:EG12978" /db_xref="GeneID:947430" /translation="MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGRMEAAPFDTPDV EELLREWLDDDQRAILLENGQLDFAVSLAENQRLRGSAFAQRHGISLALRLLPSHCPQ LEQLGAPTVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE YLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSETIRLALTAAETG HLVLATLHTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLSQKLEVDKQEGRVAL FELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQHRVGEGRL" gene 3095098..3095802 /gene="yggS" /locus_tag="b2951" /gene_synonym="ECK2946; JW2918" /db_xref="EcoGene:EG12979" /db_xref="GeneID:947423" CDS 3095098..3095802 /gene="yggS" /locus_tag="b2951" /gene_synonym="ECK2946; JW2918" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="UPF0001 family protein, PLP-binding" /protein_id="NP_417426.1" /db_xref="GI:16130852" /db_xref="ASAP:ABE-0009681" /db_xref="UniProtKB/Swiss-Prot:P67080" /db_xref="EcoGene:EG12979" /db_xref="GeneID:947423" /translation="MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIA EAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHT IDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRL RGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTM VRIGTAIFGARDYSKK" gene 3095820..3096386 /gene="yggT" /locus_tag="b2952" /gene_synonym="ECK2947; JW2919" /db_xref="EcoGene:EG12980" /db_xref="GeneID:947421" CDS 3095820..3096386 /gene="yggT" /locus_tag="b2952" /gene_synonym="ECK2947; JW2919" /note="conserved hypothetical integral membrane protein" /codon_start=1 /transl_table=11 /product="putative inner membrane protein; compensates for loss in K+ uptake" /protein_id="NP_417427.1" /db_xref="GI:16130853" /db_xref="ASAP:ABE-0009685" /db_xref="UniProtKB/Swiss-Prot:P64564" /db_xref="EcoGene:EG12980" /db_xref="GeneID:947421" /translation="MNTLTFLLSTVIELYTMVLLLRIWMQWAHCDFYNPFSQFVVKVT QPIIGPLRRVIPAMGPIDSASLLVAYILSFIKAIVLFKVVTFLPIIWIAGLLILLKTI GLLIFWVLLVMAIMSWVSQGRSPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVL LLYVINMGVAEVLQATGNMLLPGLWMAL" gene 3096383..3096673 /gene="yggU" /locus_tag="b2953" /gene_synonym="ECK2948; JW5479" /db_xref="EcoGene:EG12981" /db_xref="GeneID:947424" CDS 3096383..3096673 /gene="yggU" /locus_tag="b2953" /gene_synonym="ECK2948; JW5479" /codon_start=1 /transl_table=11 /product="UPF0235 family protein" /protein_id="NP_417428.2" /db_xref="GI:90111518" /db_xref="ASAP:ABE-0009690" /db_xref="UniProtKB/Swiss-Prot:P52060" /db_xref="EcoGene:EG12981" /db_xref="GeneID:947424" /translation="MNAVTVNDDGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVD GQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQIKIINPQQIPPEIAALIN" gene 3096681..3097274 /gene="rdgB" /locus_tag="b2954" /gene_synonym="ECK2949; JW2921; yggV" /db_xref="EcoGene:EG12982" /db_xref="GeneID:947429" CDS 3096681..3097274 /gene="rdgB" /locus_tag="b2954" /gene_synonym="ECK2949; JW2921; yggV" /EC_number="3.6.1.-" /function="enzyme; Not classified" /note="putative ribosomal protein" /codon_start=1 /transl_table=11 /product="dITP/XTP pyrophosphatase" /protein_id="NP_417429.1" /db_xref="GI:16130855" /db_xref="ASAP:ABE-0009692" /db_xref="UniProtKB/Swiss-Prot:P52061" /db_xref="EcoGene:EG12982" /db_xref="GeneID:947429" /translation="MQKVVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGL TFIENAILKARHAAKVTALPAIADDSGLAVDVLGGAPGIYSARYSGEDATDQKNLQKL LETMKDVPDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIF FVPSEGKTAAELTREEKSAISHRGQALKLLLDALRNG" gene 3097267..3098403 /gene="yggW" /locus_tag="b2955" /gene_synonym="ECK2950; JW2922" /db_xref="EcoGene:EG12983" /db_xref="GeneID:947446" CDS 3097267..3098403 /gene="yggW" /locus_tag="b2955" /gene_synonym="ECK2950; JW2922" /function="putative enzyme; Not classified" /note="putative oxidase" /codon_start=1 /transl_table=11 /product="HemN family putative oxidoreductase" /protein_id="NP_417430.1" /db_xref="GI:16130856" /db_xref="ASAP:ABE-0009694" /db_xref="UniProtKB/Swiss-Prot:P52062" /db_xref="EcoGene:EG12983" /db_xref="GeneID:947446" /translation="MVKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLL NDLDNDVAYAQGREVKTIFIGGGTPSLLSGPAMQTLLDGVRARLPLAADAEITMEANP GTVEADRFVDYQRAGVNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSF NLDLMHGLPDQSLEEALGDLRQAIELNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALW DIFEQGHQLLTAAGYQQYETSAYAKPGYQCQHNLNYWRFGDYIGIGCGAHGKVTFPDG RILRTTKTRHPRGFMQGRYLESQRDVEATDKPFEFFMNRFRLLEAAPRVEFIAYTGLC EDVIRPQLDEAIAQGYLTECADYWQITEHGKLFLNSLLELFLAE" repeat_region 3098413..3098533 /note="REP217 (repetitive extragenic palindromic) element; contains 3 REP sequences" gene complement(3098558..3099565) /gene="yggM" /locus_tag="b2956" /gene_synonym="ECK2951; JW2923" /db_xref="EcoGene:EG12704" /db_xref="GeneID:947455" CDS complement(3098558..3099565) /gene="yggM" /locus_tag="b2956" /gene_synonym="ECK2951; JW2923" /function="phenotype; Not classified" /note="putative alpha helix chain" /codon_start=1 /transl_table=11 /product="DUF1202 family putative secreted protein" /protein_id="NP_417431.1" /db_xref="GI:16130857" /db_xref="ASAP:ABE-0009697" /db_xref="UniProtKB/Swiss-Prot:P46142" /db_xref="EcoGene:EG12704" /db_xref="GeneID:947455" /translation="MKKQWIVGTALLMLMTGNAWADGEPPTENILKDQFKKQYHGILK LDAITLKNLDAKGNQATWSAEGDVSSSDDLYTWVGQLADYELLEQTWTKDKPVKFSAM LTSKGTPASGWSVNFYSFQAAASDRGRVVDDIKTNNKYLIVNSEDFNYRFSQLESALN TQKNSIPALEKEVKALDKQMVAAQKAADAYWGKDANGKQMTREDAFKKIHQQRDEFNK QNDSEAFAVKYDKEVYQPAIAACHKQSEECYEVPIQQKRDFDINEQRRQTFLQSQKLS RKLQDDWVTLEKGQYPLTMKVSEINSKKVAILMKIDDINQANERWKKDTEQLRRNGVI K" gene complement(3099682..3100728) /gene="ansB" /locus_tag="b2957" /gene_synonym="ECK2952; JW2924" /db_xref="EcoGene:EG10046" /db_xref="GeneID:947454" CDS complement(3099682..3100728) /gene="ansB" /locus_tag="b2957" /gene_synonym="ECK2952; JW2924" /EC_number="3.5.1.1" /function="enzyme; Degradation of small molecules: Amino acids" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0009063 - cellular amino acid catabolic process" /codon_start=1 /transl_table=11 /product="periplasmic L-asparaginase 2" /protein_id="NP_417432.1" /db_xref="GI:16130858" /db_xref="ASAP:ABE-0009700" /db_xref="UniProtKB/Swiss-Prot:P00805" /db_xref="EcoGene:EG10046" /db_xref="GeneID:947454" /translation="MEFFKKTALAALVMGFSGAALALPNITILATGGTIAGGGDSATK SNYTVGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKT DGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAAD KASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARK HTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVF DTLATAAKTGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQ TKDPQQIQQIFNQY" gene complement(3100904..3101623) /gene="yggN" /locus_tag="b2958" /gene_synonym="ecfF; ECK2953; JW2925" /db_xref="EcoGene:EG12705" /db_xref="GeneID:947453" CDS complement(3100904..3101623) /gene="yggN" /locus_tag="b2958" /gene_synonym="ecfF; ECK2953; JW2925" /codon_start=1 /transl_table=11 /product="DUF2884 family putative periplasmic protein" /protein_id="NP_417433.1" /db_xref="GI:16130859" /db_xref="ASAP:ABE-0009706" /db_xref="UniProtKB/Swiss-Prot:P0ADS9" /db_xref="EcoGene:EG12705" /db_xref="GeneID:947453" /translation="MMRKMLLAAALSVTAMTAHADYQCSVTPRDDVIVSPQTVQVKGE NGNLVITPDGNVMYNGKQYSLNAAQREQAKDYQAELRSTLPWIDEGAKSRVEKARIAL DKIIVQEMGESSKMRSRLTKLDAQLKEQMNRIIETRSDGLTFHYKAIDQVRAEGQQLV NQAMGGILQDSINEMGAKAVLKSGGNPLQNVLGSLGGLQSSIQTEWKKQEKDFQQFGK DVCSRVVTLEDSRKALVGNLK" repeat_region 3101696..3101774 /note="REP218 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(3101807..3102133) /gene="yggL" /locus_tag="b2959" /gene_synonym="ECK2954; JW2926" /db_xref="EcoGene:EG12443" /db_xref="GeneID:947449" CDS complement(3101807..3102133) /gene="yggL" /locus_tag="b2959" /gene_synonym="ECK2954; JW2926" /codon_start=1 /transl_table=11 /product="DUF469 family protein" /protein_id="NP_417434.4" /db_xref="GI:90111519" /db_xref="ASAP:ABE-0009712" /db_xref="UniProtKB/Swiss-Prot:P38521" /db_xref="EcoGene:EG12443" /db_xref="GeneID:947449" /translation="MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKTVDD FINEVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEEHQAIVRKWLEERKLDEVRTSEL FDVWWD" gene complement(3102133..3102852) /gene="trmI" /locus_tag="b2960" /gene_synonym="ECK2955; JW2927; trmB?; yggH" /db_xref="EcoGene:EG11779" /db_xref="GeneID:947448" CDS complement(3102133..3102852) /gene="trmI" /locus_tag="b2960" /gene_synonym="ECK2955; JW2927; trmB?; yggH" /EC_number="2.1.1.33" /function="enzyme; tRNA modification" /codon_start=1 /transl_table=11 /product="tRNA m(7)G46 methyltransferase, SAM-dependent" /protein_id="NP_417435.1" /db_xref="GI:16130861" /db_xref="ASAP:ABE-0009714" /db_xref="UniProtKB/Swiss-Prot:P0A8I5" /db_xref="EcoGene:EG11779" /db_xref="GeneID:947448" /translation="MKNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPV MGVEFSEDMLDFPALFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGA CLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVP FAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKNLSESNDYVPRPASRPVTK FEQRGHRLGHGVWDLMFERVK" gene 3103013..3104065 /gene="mutY" /locus_tag="b2961" /gene_synonym="ECK2956; JW2928; micA; mutB" /db_xref="EcoGene:EG10627" /db_xref="GeneID:947447" CDS 3103013..3104065 /gene="mutY" /locus_tag="b2961" /gene_synonym="ECK2956; JW2928; micA; mutB" /EC_number="3.2.2.-" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006281 - DNA repair" /note="adenine glycosylase; G.C --> T.A transversions" /codon_start=1 /transl_table=11 /product="adenine DNA glycosylase" /protein_id="NP_417436.1" /db_xref="GI:16130862" /db_xref="ASAP:ABE-0009720" /db_xref="UniProtKB/Swiss-Prot:P17802" /db_xref="EcoGene:EG10627" /db_xref="GeneID:947447" /translation="MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQ VATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGG KFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEV ENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWAL YPGKKPKQTLPERTGYFLLLQHEDEVLLAQRPPSGLWGGLYCFPQFADEESLRQWLAQ RQIAADNLTQLTAFRHTFSHFHLDIVPMWLPVSSFTGCMDEGNALWYNLAQPPSVGLA APVERLLQQLRTGAPV" gene 3104093..3104368 /gene="yggX" /locus_tag="b2962" /gene_synonym="ECK2957; JW2929" /db_xref="EcoGene:EG12984" /db_xref="GeneID:947461" CDS 3104093..3104368 /gene="yggX" /locus_tag="b2962" /gene_synonym="ECK2957; JW2929" /codon_start=1 /transl_table=11 /product="oxidative damage protective factor for iron-sulfur proteins" /protein_id="NP_417437.1" /db_xref="GI:16130863" /db_xref="ASAP:ABE-0009722" /db_xref="UniProtKB/Swiss-Prot:P0A8P3" /db_xref="EcoGene:EG12984" /db_xref="GeneID:947461" /translation="MSRTIFCTFLQREAEGQDFQLYPGELGKRIYNEISKEAWAQWQH KQTMLINEKKLNMMNAEHRKLLEQEMVNFLFEGKEVHIEGYTPEDKK" gene 3104433..3105512 /gene="mltC" /locus_tag="b2963" /gene_synonym="ECK2958; JW5481; yggZ" /db_xref="EcoGene:EG12986" /db_xref="GeneID:945428" CDS 3104433..3105512 /gene="mltC" /locus_tag="b2963" /gene_synonym="ECK2958; JW5481; yggZ" /EC_number="3.2.1.-" /function="putative enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /codon_start=1 /transl_table=11 /product="membrane-bound lytic murein transglycosylase C" /protein_id="NP_417438.2" /db_xref="GI:90111520" /db_xref="ASAP:ABE-0009725" /db_xref="UniProtKB/Swiss-Prot:P0C066" /db_xref="EcoGene:EG12986" /db_xref="GeneID:945428" /translation="MKKYLALALIAPLLISCSTTKKGDTYNEAWVKDTNGFDILMGQF AHNIENIWGFKEVVIAGPKDYVKYTDQYQTRSHINFDDGTITIETIAGTEPAAHLRRA IIKTLLMGDDPSSVDLYSDVDDITISKEPFLYGQVVDNTGQPIRWEGRASNFADYLLK NRLKSRSNGLRIIYSVTINMVPNHLDKRAHKYLGMVRQASRKYGVDESLILAIMQTES SFNPYAVSRSDALGLMQVVQHTAGKDVFRSQGKSGTPSRSFLFDPASNIDTGTAYLAM LNNVYLGGIDNPTSRRYAVITAYNGGAGSVLRVFSNDKIQAANIINTMTPGDVYQTLT TRHPSAESRRYLYKVNTAQKSYRRR" gene 3105714..3106970 /gene="nupG" /locus_tag="b2964" /gene_synonym="ECK2959; JW2932" /db_xref="EcoGene:EG10664" /db_xref="GeneID:946282" CDS 3105714..3106970 /gene="nupG" /locus_tag="b2964" /gene_synonym="ECK2959; JW2932" /function="transport; Transport of small molecules: Nucleosides, purines, pyrimidines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0015949 - nucleobase, nucleoside and nucleotide interconversion" /note="transport of nucleosides, permease protein" /codon_start=1 /transl_table=11 /product="nucleoside transporter" /protein_id="NP_417439.4" /db_xref="GI:90111521" /db_xref="ASAP:ABE-0009728" /db_xref="UniProtKB/Swiss-Prot:P0AFF4" /db_xref="EcoGene:EG10664" /db_xref="GeneID:946282" /translation="MNLKLQLKILSFLQFCLWGSWLTTLGSYMFVTLKFDGASIGAVY SSLGIAAVFMPALLGIVADKWLSAKWVYAICHTIGAITLFMAAQVTTPEAMFLVILIN SFAYMPTLGLINTISYYRLQNAGMDIVTDFPPIRIWGTIGFIMAMWVVSLSGFELSHM QLYIGAALSAILVLFTLTLPHIPVAKQQANQSWTTLLGLDAFALFKNKRMAIFFIFSM LLGAELQITNMFGNTFLHSFDKDPMFASSFIVQHASIIMSISQISETLFILTIPFFLS RYGIKNVMMISIVAWILRFALFAYGDPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVE KEVSPAIRASAQGMFLMMTNGFGCILGGIVSGKVVEMYTQNGITDWQTVWLIFAGYSV VLAFAFMAMFKYKHVRVPTGTQTVSH" gene complement(3107020..3109155) /gene="speC" /locus_tag="b2965" /gene_synonym="ECK2960; JW5482" /db_xref="EcoGene:EG10961" /db_xref="GeneID:947457" CDS complement(3107020..3109155) /gene="speC" /locus_tag="b2965" /gene_synonym="ECK2960; JW5482" /EC_number="4.1.1.17" /function="enzyme; Central intermediary metabolism: Polyamine biosynthesis" /GO_process="GO:0006596 - polyamine biosynthetic process" /note="ornithine decarboxylase isozyme" /codon_start=1 /transl_table=11 /product="ornithine decarboxylase, constitutive" /protein_id="NP_417440.4" /db_xref="GI:90111522" /db_xref="ASAP:ABE-0009730" /db_xref="UniProtKB/Swiss-Prot:P21169" /db_xref="EcoGene:EG10961" /db_xref="GeneID:947457" /translation="MKSMNIAASSELVSRLSSHRRVVALGDTDFTDVAAVVITAADSR SGILALLKRTGFHLPVFLYSEHAVELPAGVTAVINGNEQQWLELESAACQYEENLLPP FYDTLTQYVEMGNSTFACPGHQHGAFFKKHPAGRHFYDFFGENVFRADMCNADVKLGD LLIHEGSAKDAQKFAAKVFHADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKS NHHGALIQAGATPVYLEASRNPFGFIGGIDAHCFNEEYLRQQIRDVAPEKADLPRPYR LAIIQLGTYDGTVYNARQVIDTVGHLCDYILFDSAWVGYEQFIPMMADSSPLLLELNE NDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIRGQARFCPHKRLNNAFMLHASTSPFYP LFAALDVNAKIHEGESGRRLWAECVEIGIEARKAILARCKLFRPFIPPVVDGKLWQDY PTSVLASDRRFFSFEPGAKWHGFEGYAADQYFVDPCKLLLTTPGIDAETGEYSDFGVP ATILAHYLRENGIVPEKCDLNSILFLLTPAESHEKLAQLVAMLAQFEQHIEDDSPLVE VLPSVYNKYPVRYRDYTLRQLCQEMHDLYVSFDVKDLQKAMFRQQSFPSVVMNPQDAH SAYIRGDVELVRIRDAEGRIAAEGALPYPPGVLCVVPGEVWGGAVQRYFLALEEGVNL LPGFSPELQGVYSETDADGVKRLYGYVLK" gene 3109553..3110260 /gene="yqgA" /locus_tag="b2966" /gene_synonym="ECK2961; JW2934" /db_xref="EcoGene:EG12987" /db_xref="GeneID:947462" CDS 3109553..3110260 /gene="yqgA" /locus_tag="b2966" /gene_synonym="ECK2961; JW2934" /function="putative transport; Not classified" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="DUF554 family putative inner membrane protein" /protein_id="NP_417441.1" /db_xref="GI:16130867" /db_xref="ASAP:ABE-0009736" /db_xref="UniProtKB/Swiss-Prot:Q46831" /db_xref="EcoGene:EG12987" /db_xref="GeneID:947462" /translation="MVIGPFINASAVLLGGVLGALLSQRLPERIRVSMTSIFGLASLG IGILLVVKCANLPAMVLATLLGALIGEICLLEKGVNTAVAKAQNLFRHSRKKPAHESF IQNYVAIIVLFCASGTGIFGAMNEGMTGDPSILIAKSFLDFFTAMIFACSLGIAVSVI SIPLLIIQLTLAWAAALILPLTTPSMMADFSAVGGLLLLATGLRICGIKMFPVVNMLP ALLLAMPLSAAWTAWFA" gene 3110366..3110441 /gene="pheV" /locus_tag="b2967" /gene_synonym="ECK2962; JWR0068; pheC" /db_xref="EcoGene:EG30065" /db_xref="GeneID:947463" tRNA 3110366..3110441 /gene="pheV" /locus_tag="b2967" /gene_synonym="ECK2962; JWR0068; pheC" /product="tRNA-Phe" /note="anticodon: GAA" /db_xref="ASAP:ABE-0009738" /db_xref="EcoGene:EG30065" /db_xref="GeneID:947463" gene complement(3110590..3111126) /gene="yghD" /locus_tag="b2968" /gene_synonym="ecfC; ECK2963; gspMbeta; JW2935" /db_xref="EcoGene:EG12988" /db_xref="GeneID:947025" CDS complement(3110590..3111126) /gene="yghD" /locus_tag="b2968" /gene_synonym="ecfC; ECK2963; gspMbeta; JW2935" /function="putative transport; Not classified" /note="putative secretion pathway protein" /codon_start=1 /transl_table=11 /product="putative membrane-anchored secretion pathway M-type protein" /protein_id="NP_417442.1" /db_xref="GI:16130868" /db_xref="ASAP:ABE-0009740" /db_xref="UniProtKB/Swiss-Prot:Q46832" /db_xref="EcoGene:EG12988" /db_xref="GeneID:947025" /translation="MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAV VFLFSVGYYVLIWQPLSERIEQQETILQQLVAMNTRLKNAAPDIIAARKSATTTPAQV SRVISDSASAHSVVIRRIADRGENIQVWIEPVVFNDLLKWLNALDEKYALRVTQIDVS AAEKPGMVNVQRLEFGRG" gene complement(3111128..3112090) /gene="yghE" /locus_tag="b2969" /gene_synonym="ecfB; ECK2964; gspLbeta; JW5924" /pseudo /db_xref="EcoGene:EG12989" /db_xref="GeneID:945897" CDS complement(3111128..3112090) /gene="yghE" /locus_tag="b2969" /gene_synonym="ecfB; ECK2964; gspLbeta; JW5924" /note="pseudogene, secretion pathway protein, L-type protein homology; putative general secretion pathway for protein export (GSP)" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0009742" /db_xref="UniProtKB/Swiss-Prot:Q46833" /db_xref="EcoGene:EG12989" /db_xref="GeneID:945897" gene complement(3112093..3112941) /gene="yghF" /locus_tag="b2970" /gene_synonym="ecfA; ECK2965; gspCbeta; JW5484" /pseudo /db_xref="EcoGene:EG12990" /db_xref="GeneID:947469" CDS complement(3112093..3112941) /gene="yghF" /locus_tag="b2970" /gene_synonym="ecfA; ECK2965; gspCbeta; JW5484" /note="pseudogene, secretion pathway protein, C-type protein homology;putative transport; Not classified; putative general secretion pathway for protein export (GSP)" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0009745" /db_xref="UniProtKB/Swiss-Prot:Q46834" /db_xref="EcoGene:EG12990" /db_xref="GeneID:947469" gene complement(3113067..3113477) /gene="yghG" /locus_tag="b2971" /gene_synonym="ECK2966; gspSbeta; JW2938" /db_xref="EcoGene:EG12991" /db_xref="GeneID:947470" CDS complement(3113067..3113477) /gene="yghG" /locus_tag="b2971" /gene_synonym="ECK2966; gspSbeta; JW2938" /codon_start=1 /transl_table=11 /product="secretin (GspDbeta) OM localization lipoprotein pilotin" /protein_id="NP_417445.1" /db_xref="GI:16130871" /db_xref="ASAP:ABE-0009748" /db_xref="UniProtKB/Swiss-Prot:Q46835" /db_xref="EcoGene:EG12991" /db_xref="GeneID:947470" /translation="MSIKQMPGRVLISLLLSVTGLLSGCASHNENASLLAKKQAQNIS QNLPIKSAGYTLVLAQSSGTTVKMTIISEAGTQTTQTPDAFLTSYQRQMCADPTVKLM ITEGINYSITINDTRTGNQYQRKLDRTTCGIVKA" gene complement(3113543..3114352) /gene="pppA" /locus_tag="b2972" /gene_synonym="ECK2967; JW2939; yghH" /db_xref="EcoGene:EG12992" /db_xref="GeneID:947467" CDS complement(3113543..3114352) /gene="pppA" /locus_tag="b2972" /gene_synonym="ECK2967; JW2939; yghH" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="bifunctional prepilin leader peptidase/ methylase" /protein_id="NP_417446.4" /db_xref="GI:90111523" /db_xref="ASAP:ABE-0009751" /db_xref="UniProtKB/Swiss-Prot:Q46836" /db_xref="EcoGene:EG12992" /db_xref="GeneID:947467" /translation="MLFDVFQQYPTAMPVLATVGGLIIGSFLNVVIWRYPIMLRQQMA EFHGEMSSAQSKISLALPRSHCPHCQQTIRIRDNIPLFSWLMLKGRCRDCQAKISKRY PLVELLTALAFLLASLVWPESGWGLAVMILSAWLIAASVIDLDHQWLPDVFTQGVLWT GLIAAWAQQSPLTLQDAVTGVLVGFITFYSLRWIAGIVLRKEALGMGDVLLFAALGGW VGALSLPNVALIASCCGLIYAVITKRGSTTLPFGPCLSLGGIATLYLQALF" repeat_region 3114378..3114545 /note="REP219 (repetitive extragenic palindromic) element; contains 3 REP sequences" gene complement(3114550..3119112) /gene="sslE" /locus_tag="b4466" /gene_synonym="acfD; ECK2968; JW5925; yghJ" /db_xref="EcoGene:EG12994" /db_xref="GeneID:2847716" CDS complement(3114550..3119112) /gene="sslE" /locus_tag="b4466" /gene_synonym="acfD; ECK2968; JW5925; yghJ" /note="putative lipoprotein" /codon_start=1 /transl_table=11 /product="putative secreted and surface-associated lipoprotein mucinase" /protein_id="YP_026189.1" /db_xref="GI:49176293" /db_xref="ASAP:ABE-0174096" /db_xref="UniProtKB/Swiss-Prot:P0CK95" /db_xref="EcoGene:EG12994" /db_xref="GeneID:2847716" /translation="MNKKFKYKKSLLAAILSATLLAGCDGGGSGSSSDTPPVDSGTGS LPEVKPDPTPNPEPTPEPTPDPEPTPEPIPDPEPTPEPEPEPVPTKTGYLTLGGSQRV TGATCNGESSDGFTFKPGEDVTCVAGNTTIATFNTQSEAARSLRAVEKVSFSLEDAQE LAGSDDKKSNAVSLVTSSNSCPANTEQVCLTFSSVIESKRFDSLYKQIDLAPEEFKKL VNEEVENNAATDKAPSTHTSPVVPVTTPGTKPDLNASFVSANAEQFYQYQPTEIILSE GRLVDSQGYGVAGVNYYTNSGRGVTGENGEFSFSWGETISFGIDTFELGSVRGNKSTI ALTELGDEVRGANIDQLIHRYSTTGQNNTRVVPDDVRKVFAEYPNVINEIINLSLSNG ATLGEGEQVVNLPNEFIEQFNTGQAKEIDTAICAKTDGCNEARWFSLTTRNVNDGQIQ GVINKLWGVDTNYKSVSKFHVFHDSTNFYGSTGNARGQAVVNISNAAFPILMARNDKN YWLAFGEKRAWDKNELAYITEAPSLVEPENVTRDTATFNLPFISLGQVGEGKLMVIGN PHYNSILRCPNGYSWNGGVNKDGQCTLNSDPDDMKNFMENVLRYLSDDKWKPDAKASM TVGTNLDTVYFKRHGQVTGNSAAFDFHPDFAGISVEHLSSYGDLDPQEMPLLILNGFE YVTQVGNDPYAIPLRADTSKPKLTQQDVTDLIAYLNKGGSVLIMENVMSNLKEESASG FVRLLDAAGLSMALNKSVVNNDPQGYPNRVRQQRATGIWVYERYPAVDGALPYTIDSK TGEVKWKYQVENKPDDKPKLEVASWLEDVDGKQETRYAFIDEADHKTEDSLKAAKEKI FAAFPGLKECTNPAYHYEVNCLEYRPGTGVPVTGGMYVPQYTQLSLNADTAKAMVQAA DLGTNIQRLYQHELYFRTNGRKGERLSSVDLERLYQNMSVWLWNDTSYRYEEGKNDEL GFKTFTEFLNCYANDAYAGGTKCSADLKKSLVDNNMIYGDGSSKAGMMNPSYPLNYME KPLTRLMLGRSWWDLNIKVDVEKYPGAVSEEGQNVTETISLYSNPTKWFAGNMQSTGL WAPAQKEVTIKSNANVPVTVTVALADDLTGREKHEVALNRPPRVTKTYSLDASGTVKF KVPYGGLIYIKGNSSTNESASFTFTGVVKAPFYKDGAWKNDLNSPAPLGELESDAFVY TTPKKNLNASNYTGGLEQFANDLDTFASSMNDFYGRDSEDGKHRMFTYKNLPGHKHRF TNDVQISIGDAHSGYPVMNSSFSPNSTTLPTTPLNDWLIWHEVGHNAAETPLTVPGAT EVANNVLALYMQDRYLGKMNRVADDITVAPEYLEESNNQAWARGGAGDRLLMYAQLKE WAEKNFDIKKWYPDGTPLPEFYSEREGMKGWNLFQLMHRKARGDEVSNDKFGGKNYCA ESNGNAADTLMLCASWVAQTDLSEFFKKWNPGANAYQLPGASEMSFEGGVSQSAYNTL ASLDLPKPEQGPETINQVTEHKMSAE" repeat_region 3119561..3119587 /note="REP220 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(3119597..3121279) /gene="glcA" /locus_tag="b2975" /gene_synonym="ECK2969; JW2942; yghK" /db_xref="EcoGene:EG12995" /db_xref="GeneID:947259" CDS complement(3119597..3121279) /gene="glcA" /locus_tag="b2975" /gene_synonym="ECK2969; JW2942; yghK" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="putative permease" /codon_start=1 /transl_table=11 /product="glycolate transporter" /protein_id="NP_417449.1" /db_xref="GI:16130875" /db_xref="ASAP:ABE-0009763" /db_xref="UniProtKB/Swiss-Prot:Q46839" /db_xref="EcoGene:EG12995" /db_xref="GeneID:947259" /translation="MVTWTQMYMPMGGLGLSALVALIPIIFFFVALAVLRLKGHVAGA ITLILSILIAIFAFKMPIDMAFAAAGYGFIYGLWPIAWIIVAAVFLYKLTVASGQFDI IRSSVISITDDQRLQVLLIGFSFGALLEGAAGFGAPVAITGALLVGLGFKPLYAAGLC LIANTAPVAFGALGVPILVAGQVTGIDPFHIGAMAGRQLPFLSVLVPFWLVAMMDGWK GVKETWPAALVAGGSFAVTQFFTSNYIGPELPDITSALVSIVSLALFLKVWRPKNTET AISMGQSAGAMVVNKPSSGGPVPSEYSLGQIIRAWSPFLILTVLVTIWTMKPFKALFA PGGAFYSLVINFQIPHLHQQVLKAAPIVAQPTPMDAVFKFDPLSAGGTAIFIAAIISI FILGVGIKKGIGVFAETLISLKWPILSIGMVLAFAFVTNYSGMSTTLALVLAGTGVMF PFFSPFLGWLGVFLTGSDTSSNALFGSLQSTTAQQINVSDTLLVAANTSGGVTGKMIS PQSIAVACAATGMVGRESELFRYTVKHSLIFASVIGIITLLQAYVFTGMLVS" gene complement(3121634..3123805) /gene="glcB" /locus_tag="b2976" /gene_synonym="ECK2970; glc; JW2943" /db_xref="EcoGene:EG20080" /db_xref="GeneID:948857" CDS complement(3121634..3123805) /gene="glcB" /locus_tag="b2976" /gene_synonym="ECK2970; glc; JW2943" /EC_number="2.3.3.9" /function="enzyme; Central intermediary metabolism: Glyoxylate bypass" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0009436 - glyoxylate catabolic process" /codon_start=1 /transl_table=11 /product="malate synthase G" /protein_id="NP_417450.1" /db_xref="GI:16130876" /db_xref="ASAP:ABE-0009767" /db_xref="UniProtKB/Swiss-Prot:P37330" /db_xref="EcoGene:EG20080" /db_xref="GeneID:948857" /translation="MSQTITQSRLRIDANFKRFVDEEVLPGTGLDAAAFWRNFDEIVH DLAPENRQLLAERDRIQAALDEWHRSNPGPVKDKAAYKSFLRELGYLVPQPERVTVET TGIDSEITSQAGPQLVVPAMNARYALNAANARWGSLYDALYGSDIIPQEGAMVSGYDP QRGEQVIAWVRRFLDESLPLENGSYQDVVAFKVVDKQLRIQLKNGKETTLRTPAQFVG YRGDAAAPTCILLKNNGLHIELQIDANGRIGKDDPAHINDVIVEAAISTILDCEDSVA AVDAEDKILLYRNLLGLMQGTLQEKMEKNGRQIVRKLNDDRHYTAADGSEISLHGRSL LFIRNVGHLMTIPVIWDSEGNEIPEGILDGVMTGAIALYDLKVQKNSRTGSVYIVKPK MHGPQEVAFANKLFTRIETMLGMAPNTLKMGIMDEERRTSLNLRSCIAQARNRVAFIN TGFLDRTGDEMHSVMEAGPMLRKNQMKSTPWIKAYERNNVLSGLFCGLRGKAQIGKGM WAMPDLMADMYSQKGDQLRAGANTAWVPSPTAATLHALHYHQTNVQSVQANIAQTEFN AEFEPLLDDLLTIPVAENANWSAQEIQQELDNNVQGILGYVVRWVEQGIGCSKVPDIH NVALMEDRATLRISSQHIANWLRHGILTKEQVQASLENMAKVVDQQNAGDPAYRPMAG NFANSCAFKAASDLIFLGVKQPNGYTEPLLHAWRLREKESH" gene complement(3123827..3124231) /gene="glcG" /locus_tag="b2977" /gene_synonym="ECK2971; JW2944; yghC" /db_xref="EcoGene:EG12952" /db_xref="GeneID:947473" CDS complement(3123827..3124231) /gene="glcG" /locus_tag="b2977" /gene_synonym="ECK2971; JW2944; yghC" /codon_start=1 /transl_table=11 /product="DUF336 family protein" /protein_id="NP_417451.1" /db_xref="GI:16130877" /db_xref="ASAP:ABE-0009769" /db_xref="UniProtKB/Swiss-Prot:P0AEQ1" /db_xref="EcoGene:EG12952" /db_xref="GeneID:947473" /translation="MKTKVILSQQMASAIIAAGQEEAQKNNWSVSIAVADDGGHLLAL SRMDDCAPIAAYISQEKARTAALGRRETKGYEEMVNNGRTAFVTAPLLTSLEGGVPVV VDGQIIGAVGVSGLTGAQDAQVAKAAAAVLAK" gene complement(3124236..3125459) /gene="glcF" /locus_tag="b4467" /gene_synonym="ECK2972; gox; JW5486; yghL" /db_xref="EcoGene:EG13291" /db_xref="GeneID:2847717" CDS complement(3124236..3125459) /gene="glcF" /locus_tag="b4467" /gene_synonym="ECK2972; gox; JW5486; yghL" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /codon_start=1 /transl_table=11 /product="glycolate oxidase 4Fe-4S iron-sulfur cluster subunit" /protein_id="YP_026190.1" /db_xref="GI:49176294" /db_xref="ASAP:ABE-0174097" /db_xref="UniProtKB/Swiss-Prot:P52074" /db_xref="EcoGene:EG13291" /db_xref="GeneID:2847717" /translation="MQTQLTEEMRQNARALEADSILRACVHCGFCTATCPTYQLLGDE LDGPRGRIYLIKQVLEGNEVTLKTQEHLDRCLTCRNCETTCPSGVRYHNLLDIGRDIV EQKVKRPLPERILREGLRQVVPRPAVFRALTQVGLVLRPFLPEQVRAKLPAETVKAKP RPPLRHKRRVLMLEGCAQPTLSPNTNAATARVLDRLGISVMPANEAGCCGAVDYHLNA QEKGLARARNNIDAWWPAIEAGAEAILQTASGCGAFVKEYGQMLKNDALYADKARQVS ELAVDLVELLREEPLEKLAIRGDKKLAFHCPCTLQHAQKLNGEVEKVLLRLGFTLTDV PDSHLCCGSAGTYALTHPDLARQLRDNKMNALESGKPEMIVTANIGCQTHLASAGRTS VRHWIEIVEQALEKE" gene complement(3125470..3126522) /gene="glcE" /locus_tag="b4468" /gene_synonym="ECK2973; gox; JW5487; yghL" /db_xref="EcoGene:EG12996" /db_xref="GeneID:2847718" CDS complement(3125470..3126522) /gene="glcE" /locus_tag="b4468" /gene_synonym="ECK2973; gox; JW5487; yghL" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /note="glycolate oxidase iron-sulfur subunit" /codon_start=1 /transl_table=11 /product="glycolate oxidase FAD binding subunit" /protein_id="YP_026191.1" /db_xref="GI:49176295" /db_xref="ASAP:ABE-0174098" /db_xref="UniProtKB/Swiss-Prot:P52073" /db_xref="EcoGene:EG12996" /db_xref="GeneID:2847718" /translation="MLRECDYSQALLEQVNQAISDKTPLVIQGSNSKAFLGRPVTGQT LDVRCHRGIVNYDPTELVITARVGTPLVTIEAALESAGQMLPCEPPHYGEEATWGGMV ACGLAGPRRPWSGSVRDFVLGTRIITGAGKHLRFGGEVMKNVAGYDLSRLMVGSYGCL GVLTEISMKVLPRPRASLSLRREISLQEAMSEIAEWQLQPLPISGLCYFDNALWIRLE GGEGSVKAARELLGGEEVAGQFWQQLREQQLPFFSLPGTLWRISLPSDAPMMDLPGEQ LIDWGGALRWLKSTAEDNQIHRIARNAGGHATRFSAGDGGFAPLSAPLFRYHQQLKQQ LDPCGVFNPGRMYAEL" gene complement(3126522..3128021) /gene="glcD" /locus_tag="b2979" /gene_synonym="ECK2974; gox; JW2946; yghM" /db_xref="EcoGene:EG12997" /db_xref="GeneID:947353" CDS complement(3126522..3128021) /gene="glcD" /locus_tag="b2979" /gene_synonym="ECK2974; gox; JW2946; yghM" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="glycolate oxidase subunit D" /codon_start=1 /transl_table=11 /product="glycolate oxidase subunit, FAD-linked" /protein_id="NP_417453.1" /db_xref="GI:16130879" /db_xref="ASAP:ABE-0009773" /db_xref="UniProtKB/Swiss-Prot:P0AEP9" /db_xref="EcoGene:EG12997" /db_xref="GeneID:947353" /translation="MSILYEERLDGALPDVDRTSVLMALREHVPGLEILHTDEEIIPY ECDGLSAYRTRPLLVVLPKQMEQVTAILAVCHRLRVPVVTRGAGTGLSGGALPLEKGV LLVMARFKEILDINPVGRRARVQPGVRNLAISQAVAPHNLYYAPDPSSQIACSIGGNV AENAGGVHCLKYGLTVHNLLKIEVQTLDGEALTLGSDALDSPGFDLLALFTGSEGMLG VTTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIANGIIPGGLEMMDNLSIRAAE DFIHAGYPVDAEAILLCELDGVESDVQEDCERVNDILLKAGATDVRLAQDEAERVRFW AGRKNAFPAVGRISPDYYCMDGTIPRRALPGVLEGIARLSQQYDLRVANVFHAGDGNM HPLILFDANEPGEFARAEELGGKILELCVEVGGSISGEHGIGREKINQMCAQFNSDEI TTFHAVKAAFDPDGLLNPGKNIPTLHRCAEFGAMHVHHGHLPFPELERF" gene 3128272..3129036 /gene="glcC" /locus_tag="b2980" /gene_synonym="ECK2975; JW2947; yghN" /db_xref="EcoGene:EG12998" /db_xref="GeneID:947466" CDS 3128272..3129036 /gene="glcC" /locus_tag="b2980" /gene_synonym="ECK2975; JW2947; yghN" /function="regulator; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006350 - transcription" /note="transcriptional activator for glc operon" /codon_start=1 /transl_table=11 /product="glycolate-inducible glc operon transcriptional repressor; autorepressor" /protein_id="NP_417454.1" /db_xref="GI:16130880" /db_xref="ASAP:ABE-0009777" /db_xref="UniProtKB/Swiss-Prot:P0ACL5" /db_xref="EcoGene:EG12998" /db_xref="GeneID:947466" /translation="MKDERRPICEVVAESIERLIIDGVLKVGQPLPSERRLCEKLGFS RSALREGLTVLRGRGIIETAQGRDSRVARLNRVQDTSPLIHLFSTQPRTLYDLLDVRA LLEGESARLAATLGTQADFVVITRCYEKMLAASENNKEISLIEHAQLDHAFHLAICQA SHNQVLVFTLQSLTDLMFNSVFASVNNLYHRPQQKKQIDRQHARIYNAVLQRLPHVAQ RAARDHVRTVKKNLHDIELEGHHLIRSAVPLEMNLS" gene complement(3129043..3130143) /gene="yghO" /locus_tag="b2981" /gene_synonym="ECK2976; JW5848" /pseudo /db_xref="EcoGene:EG12999" /db_xref="GeneID:947701" CDS complement(3129043..3130143) /gene="yghO" /locus_tag="b2981" /gene_synonym="ECK2976; JW5848" /note="pseudogene, IS-interrupted" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0009779" /db_xref="UniProtKB/Swiss-Prot:Q46840" /db_xref="EcoGene:EG12999" /db_xref="GeneID:947701" mobile_element 3130146..3131340 /mobile_element_type="insertion sequence:IS5LO" gene 3130178..3131194 /gene="insH1" /locus_tag="b2982" /gene_synonym="ECK0261" /db_xref="EcoGene:EG40008" /db_xref="GeneID:947516" CDS 3130178..3131194 /gene="insH1" /locus_tag="b2982" /gene_synonym="ECK0261" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS5 transposase and trans-activator" /protein_id="NP_417456.1" /db_xref="GI:16130882" /db_xref="ASAP:ABE-0009783" /db_xref="UniProtKB/Swiss-Prot:P0CE56" /db_xref="EcoGene:EG40008" /db_xref="GeneID:947516" /translation="MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQIL PWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLF ARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIE APSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQL GNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINI EYMKASIRARVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRADQMIRQW ERSH" gene complement(3131341..3132408) /gene="yghQ" /locus_tag="b2983" /gene_synonym="ECK2977; JW5490" /db_xref="EcoGene:EG13001" /db_xref="GeneID:947716" CDS complement(3131341..3132408) /gene="yghQ" /locus_tag="b2983" /gene_synonym="ECK2977; JW5490" /codon_start=1 /transl_table=11 /product="putative inner membrane polysaccharide flippase" /protein_id="YP_026192.1" /db_xref="GI:49176296" /db_xref="ASAP:ABE-0009786" /db_xref="UniProtKB/Swiss-Prot:Q46841" /db_xref="EcoGene:EG13001" /db_xref="GeneID:947716" /translation="MAGFNIKHWFADGAFRTIIRNSAWLGSSNVVSALLGLLALSCAG KGMTPAMFGVLVIVQSYAKSISDFIKFQTWQLVVQYGTPALTNNNPQQFRNVVSFSFS LDIVSGAVAIVGGIALLPFLSHSLGLDDQSFWLAALYCTLIPSMASSTPTGILRAVDR FDLIAVQQATKPFLRAAGSVVAWYFDFGFAGFVIAWYVSNLVGGTMYWWFAARELRRR NIHNAFKLNLFESARYIKGAWSFVWSTNIAHSIWSARNSCSTVLVGIVLGPAAAGLFK IAMTFFDAAGTPAGLLGKSFYPEVMRLDPRTTRPWLLGVKSGLLAGGIGILVALAVLI VGKPLISLVFGVKYLEAYDLI" gene complement(3132454..3133212) /gene="yghR" /locus_tag="b2984" /gene_synonym="ECK2978; JW2952" /db_xref="EcoGene:EG13002" /db_xref="GeneID:947310" CDS complement(3132454..3133212) /gene="yghR" /locus_tag="b2984" /gene_synonym="ECK2978; JW2952" /codon_start=1 /transl_table=11 /product="putative ATP-binding protein" /protein_id="NP_417458.1" /db_xref="GI:16130884" /db_xref="ASAP:ABE-0009789" /db_xref="UniProtKB/Swiss-Prot:P64572" /db_xref="EcoGene:EG13002" /db_xref="GeneID:947310" /translation="MDALQTQTVNSTTAPQPNYIPGLIAVVGCDGTGKSTLTTDLVKS LQQHWQTERRYLGLLSGEDGDKIKRLPLVGVWLERRLAAKSSKTQSMKTKSPALWAAV IMYCFSLRRMANLRKVQRLAQSGVLVVSDRFPQAEISGFYYDGPGIGVERATGKISMF LAQRERRLYQQMAQYRPELIIRLGIDIETAISRKPDHDYAELQDKIGVMSKIGYNGTK ILEIDSRAPYSEVLEQAQKAVSLVAIVSDRRSLT" gene complement(3133244..3133957) /gene="yghS" /locus_tag="b2985" /gene_synonym="ECK2979; JW5491" /db_xref="EcoGene:EG13003" /db_xref="GeneID:947476" CDS complement(3133244..3133957) /gene="yghS" /locus_tag="b2985" /gene_synonym="ECK2979; JW5491" /codon_start=1 /transl_table=11 /product="putative ATP-binding protein" /protein_id="NP_417459.1" /db_xref="GI:16130885" /db_xref="ASAP:ABE-0009793" /db_xref="UniProtKB/Swiss-Prot:Q46843" /db_xref="EcoGene:EG13003" /db_xref="GeneID:947476" /translation="MNQRNMSIINSTPVRVIAIVGCDGSGKSTLTASLVNELAARMPT EHIYLGQSSGRIGEWISQLPVIGAPFGRYLRSKAAHVHEKPSTPPGNITALVIYLLSC WRAYKFRKMLCKSQQGFLLITDRYPQVEVPGFRFDGPQLAKTTGGNGWIKMLRQRELK LYQWMASYLPVLLIRLGIDEQTAFARKPDHQLAALQEKIAVTPQLTFNGAKILELDGR HPADEILQASLRAIHAALS" gene 3134131..3134823 /gene="yghT" /locus_tag="b2986" /gene_synonym="ECK2980; JW2954" /db_xref="EcoGene:EG13004" /db_xref="GeneID:947477" CDS 3134131..3134823 /gene="yghT" /locus_tag="b2986" /gene_synonym="ECK2980; JW2954" /codon_start=1 /transl_table=11 /product="putative ATP-binding protein" /protein_id="NP_417460.1" /db_xref="GI:16130886" /db_xref="ASAP:ABE-0009798" /db_xref="UniProtKB/Swiss-Prot:Q46844" /db_xref="EcoGene:EG13004" /db_xref="GeneID:947477" /translation="MQSITPPLIAVIGSDGSGKSTVCEHLITVVEKYGAAERVHLGKQ AGNVGRAVTKLPLMGKSLHKTIERNQVKTAKKLPGPVPALVITAFVARRLLRFRHMLA CRRRGLIVLTDRYPQDQIPGAYDGTVFPPNVEGGRFVSWLASQERKAFHWMASHKPDL VIKLNVDLEVACARKPDHKRESLARKIAITPQLTFGGAQLVDIDANQPLEQVLVDAEK AITDFMTARGYH" gene complement(3134872..3136371) /gene="pitB" /locus_tag="b2987" /gene_synonym="ECK2981; JW2955" /db_xref="EcoGene:EG12883" /db_xref="GeneID:947475" CDS complement(3134872..3136371) /gene="pitB" /locus_tag="b2987" /gene_synonym="ECK2981; JW2955" /function="transport; Transport of small molecules: Anions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006793 - phosphorus metabolic process" /note="low-affinity phosphate transport" /codon_start=1 /transl_table=11 /product="phosphate transporter" /protein_id="NP_417461.1" /db_xref="GI:16130887" /db_xref="ASAP:ABE-0009800" /db_xref="UniProtKB/Swiss-Prot:P43676" /db_xref="EcoGene:EG12883" /db_xref="GeneID:947475" /translation="MLNLFVGLDIYTGLLLLLALAFVLFYEAINGFHDTANAVAAVIY TRAMQPQLAVVMAAFFNFFGVLLGGLSVAYAIVHMLPTDLLLNMGSTHGLAMVFSMLL AAIIWNLGTWFFGLPASSSHTLIGAIIGIGLTNALLTGSSVMDALNLREVTKIFSSLI VSPIVGLVIAGGLIFLLRRYWSGTKKRDRIHRIPEDRKKKKGKRKPPFWTRIALIVSA AGVAFSHGANDGQKGIGLVMLVLVGIAPAGFVVNMNASGYEITRTRDAVTNFEHYLQQ HPELPQKLIAMEPPLPAASTDGTQVTEFHCHPANTFDAIARVKTMLPGNMESYEPLSV SQRSQLRRIMLCISDTSAKLAKLPGVSKEDQNLLKKLRSDMLSTIEYAPVWIIMAVAL ALGIGTMIGWRRVAMTIGEKIGKRGMTYAQGMAAQMTAAVSIGLASYIGMPVSTTHVL SSAVAGTMVVDGGGLQRKTVTSILMAWVFTLPAAIFLSGGLYWIALQLI" gene complement(3136663..3138522) /gene="gss" /locus_tag="b2988" /gene_synonym="ECK2982; gsp; JW2956" /db_xref="EcoGene:EG12882" /db_xref="GeneID:947474" CDS complement(3136663..3138522) /gene="gss" /locus_tag="b2988" /gene_synonym="ECK2982; gsp; JW2956" /EC_number="3.5.1.78" /EC_number="6.3.1.8" /function="enzyme; Central intermediary metabolism: Polyamine biosynthesis" /GO_process="GO:0006596 - polyamine biosynthetic process" /note="glutathionylspermidine synthetase/amidase" /codon_start=1 /transl_table=11 /product="glutathionylspermidine amidase and glutathionylspermidine synthetase" /protein_id="NP_417462.1" /db_xref="GI:16130888" /db_xref="ASAP:ABE-0009804" /db_xref="UniProtKB/Swiss-Prot:P0AES0" /db_xref="EcoGene:EG12882" /db_xref="GeneID:947474" /translation="MSKGTTSQDAPFGTLLGYAPGGVAIYSSDYSSLDPQEYEDDAVF RSYIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQ AFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQ WTRELEMVVENGCYTLKDTFDDTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLEN KGQFDGKWLDEKDPLQNAYVQANGQVINQDPYHYYTITESAEQELIKATNELHLMYLH ATDKVLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDERGLKVYEYNAD SASCHTEAGLILERWAEQGYKGNGFNPAEGLINELAGAWKHSRARPFVHIMQDKDIEE NYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVWKTWAWETAFDQ IREVSDREFAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLF PHHRYLLDTDFTVNDELVKTGYAVKPIAGRCGSNIDLVSHHEEVLDKTSGKFAEQKNI YQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGDESLVIKKESDIEPLIVVKK" gene 3138727..3139593 /gene="yghU" /locus_tag="b2989" /gene_synonym="ECK2983; JW5492" /db_xref="EcoGene:EG13005" /db_xref="GeneID:947472" CDS 3138727..3139593 /gene="yghU" /locus_tag="b2989" /gene_synonym="ECK2983; JW5492" /codon_start=1 /transl_table=11 /product="putative S-transferase" /protein_id="NP_417463.4" /db_xref="GI:90111524" /db_xref="ASAP:ABE-0009812" /db_xref="UniProtKB/Swiss-Prot:Q46845" /db_xref="EcoGene:EG13005" /db_xref="GeneID:947472" /translation="MTDNTYQPAKVWTWDKSAGGAFANINRPVSGPTHEKTLPVGKHP LQLYSLGTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIP ALRDHTHNPPIRVFESGSILLYLAEKFGYFLPQDLAKRTETMNWLFWLQGAAPFLGGG FGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGN VVLGGVYDAAEFLDAGSYKHVQRWAKEVGERPAVKRGRIVNRTNGPLNEQLHERHDAS DFETNTEDKRQG" repeat_region 3139621..3139703 /note="REP221 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(3139716..3139964) /gene="hybG" /locus_tag="b2990" /gene_synonym="ECK2984; JW2958" /db_xref="EcoGene:EG11805" /db_xref="GeneID:948020" CDS complement(3139716..3139964) /gene="hybG" /locus_tag="b2990" /gene_synonym="ECK2984; JW2958" /function="phenotype; Energy metabolism, carbon: Anaerobic respiration" /GO_process="GO:0009061 - anaerobic respiration; GO:0006457 - protein folding" /note="hydrogenase-2 operon protein: may effect maturation of large subunit of hydrogenase-2" /codon_start=1 /transl_table=11 /product="hydrogenase 2 accessory protein" /protein_id="NP_417464.1" /db_xref="GI:16130890" /db_xref="ASAP:ABE-0009816" /db_xref="UniProtKB/Swiss-Prot:P0AAM7" /db_xref="EcoGene:EG11805" /db_xref="GeneID:948020" /translation="MCIGVPGQVLAVGEDIHQLAQVEVCGIKRDVNIALICEGNPADL LGQWVLVHVGFAMSIIDEDEAKATLDALRQMDYDITSA" gene complement(3139977..3140318) /gene="hybF" /locus_tag="b2991" /gene_synonym="ECK2985; JW5493" /db_xref="EcoGene:EG11804" /db_xref="GeneID:948004" CDS complement(3139977..3140318) /gene="hybF" /locus_tag="b2991" /gene_synonym="ECK2985; JW5493" /function="regulator; Energy metabolism, carbon: Anaerobic respiration" /GO_process="GO:0009061 - anaerobic respiration; GO:0006457 - protein folding" /note="may modulate levels of hydrogenease-2" /codon_start=1 /transl_table=11 /product="protein involved with the maturation of hydrogenases 1 and 2" /protein_id="NP_417465.1" /db_xref="GI:16130891" /db_xref="ASAP:ABE-0009818" /db_xref="UniProtKB/Swiss-Prot:P0A703" /db_xref="EcoGene:EG11804" /db_xref="GeneID:948004" /translation="MHELSLCQSAVEIIQRQAEQHDVKRVTAVWLEIGALSCVEESAV RFSFEIVCHGTVAQGCDLHIVYKPAQAWCWDCSQVVEIHQHDAQCPLCHGERLRVDTG DSLIVKSIEVE" gene complement(3140311..3140799) /gene="hybE" /locus_tag="b2992" /gene_synonym="ECK2986; JW2960" /db_xref="EcoGene:EG11803" /db_xref="GeneID:947483" CDS complement(3140311..3140799) /gene="hybE" /locus_tag="b2992" /gene_synonym="ECK2986; JW2960" /function="phenotype; Energy metabolism, carbon: Anaerobic respiration" /note="member of hyb operon" /codon_start=1 /transl_table=11 /product="hydrogenase 2-specific chaperone" /protein_id="NP_417466.1" /db_xref="GI:16130892" /db_xref="ASAP:ABE-0009824" /db_xref="UniProtKB/Swiss-Prot:P0AAN1" /db_xref="EcoGene:EG11803" /db_xref="GeneID:947483" /translation="MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSD FTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGV SQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGE NA" gene complement(3140792..3141286) /gene="hybD" /locus_tag="b2993" /gene_synonym="ECK2987; JW2961" /db_xref="EcoGene:EG11802" /db_xref="GeneID:948982" CDS complement(3140792..3141286) /gene="hybD" /locus_tag="b2993" /gene_synonym="ECK2987; JW2961" /function="putative enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_process="GO:0009061 - anaerobic respiration" /note="probable processing element for hydrogenase-2" /codon_start=1 /transl_table=11 /product="maturation protease for hydrogenase 2" /protein_id="NP_417467.1" /db_xref="GI:16130893" /db_xref="ASAP:ABE-0009826" /db_xref="UniProtKB/Swiss-Prot:P37182" /db_xref="EcoGene:EG11802" /db_xref="GeneID:948982" /translation="MRILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTA GMELLGDMANRDHLIIADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLS ALRFTGEFPKKLTLVGVIPESLEPHIGLTPTVEAMIEPALEQVLAALRESGVEAIPRE AIHD" gene complement(3141286..3142989) /gene="hybC" /locus_tag="b2994" /gene_synonym="ECK2988; JW2962" /db_xref="EcoGene:EG11801" /db_xref="GeneID:945182" CDS complement(3141286..3142989) /gene="hybC" /locus_tag="b2994" /gene_synonym="ECK2988; JW2962" /EC_number="1.12.99.6" /function="putative enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0019866 - organelle inner membrane" /GO_process="GO:0009061 - anaerobic respiration" /note="probable large subunit, hydrogenase-2" /codon_start=1 /transl_table=11 /product="hydrogenase 2, large subunit" /protein_id="NP_417468.1" /db_xref="GI:16130894" /db_xref="ASAP:ABE-0009828" /db_xref="UniProtKB/Swiss-Prot:P0ACE0" /db_xref="EcoGene:EG11801" /db_xref="GeneID:945182" /translation="MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEI VKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTH DHIVHFYQLSALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVA SGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNL AVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRG KGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHS WYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRE STQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNI GKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGP RNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV L" gene complement(3142986..3144164) /gene="hybB" /locus_tag="b2995" /gene_synonym="ECK2989; JW5494" /db_xref="EcoGene:EG11800" /db_xref="GeneID:948615" CDS complement(3142986..3144164) /gene="hybB" /locus_tag="b2995" /gene_synonym="ECK2989; JW5494" /function="putative enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009061 - anaerobic respiration; GO:0017004 - cytochrome complex assembly" /note="probable cytochrome Ni/Fe component of hydrogenase-2" /codon_start=1 /transl_table=11 /product="putative hydrogenase 2 cytochrome b type component" /protein_id="NP_417469.1" /db_xref="GI:16130895" /db_xref="ASAP:ABE-0009830" /db_xref="UniProtKB/Swiss-Prot:P37180" /db_xref="EcoGene:EG11800" /db_xref="GeneID:948615" /translation="MSHDPQPLGGKIISKPVMIFGPLIVICMLLIVKRLVFGLGSVSD LNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLG GLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWK VSLQRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSLLTAF IMGFSIVIFEGSLVQAGLRGNGPDEKSLFVKLTNTISVLLAIFIVLRFGELIYRDKLS LAFAGDFYSVMFWIEVLLMLFPLVVLRVAKLRNDSRMLFLSALSALLGCATWRLTYSL VAFNPGGGYAYFPTWEELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA " gene complement(3144154..3145140) /gene="hybA" /locus_tag="b2996" /gene_synonym="ECK2990; hydL; JW2964" /db_xref="EcoGene:EG11799" /db_xref="GeneID:944842" CDS complement(3144154..3145140) /gene="hybA" /locus_tag="b2996" /gene_synonym="ECK2990; hydL; JW2964" /function="enzyme; Energy metabolism, carbon: Anaerobic respiration" /note="hydrogenase-2 small subunit" /codon_start=1 /transl_table=11 /product="hydrogenase 2 4Fe-4S ferredoxin-type component" /protein_id="NP_417470.1" /db_xref="GI:16130896" /db_xref="ASAP:ABE-0009832" /db_xref="UniProtKB/Swiss-Prot:P0AAJ8" /db_xref="EcoGene:EG11799" /db_xref="GeneID:944842" /translation="MNRRNFIKAASCGALLTGALPSVSHAAAENRPPIPGSLGMLYDS TLCVGCQACVTKCQDINFPERNPQGEQTWSNNDKLSPYTNNIIQVWTSGTGVNKDQEE NGYAYIKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVP KYDYNNPFGALHKCELCNQKGVERLDKGGLPGCVEVCPAGAVIFGTREELMAEAKKRL ALKPGSEYHYPRQTLKSGDTYLHTVPKYYPHLYGEKEGGGTQVLVLTGVPYENLDLPK LDDLSTGARSENIQHTLYKGMMLPLAVLAGLTVLVRRNTKNDHHDGGDDHES" gene complement(3145143..3146261) /gene="hybO" /locus_tag="b2997" /gene_synonym="ECK2991; JW2965; yghV" /db_xref="EcoGene:EG13006" /db_xref="GeneID:945902" CDS complement(3145143..3146261) /gene="hybO" /locus_tag="b2997" /gene_synonym="ECK2991; JW2965; yghV" /EC_number="1.12.99.6" /function="putative enzyme; Not classified" /GO_component="GO:0019866 - organelle inner membrane" /GO_process="GO:0009061 - anaerobic respiration; GO:0006457 - protein folding" /codon_start=1 /transl_table=11 /product="hydrogenase 2, small subunit" /protein_id="NP_417471.1" /db_xref="GI:16130897" /db_xref="ASAP:ABE-0009834" /db_xref="UniProtKB/Swiss-Prot:P69741" /db_xref="EcoGene:EG13006" /db_xref="GeneID:945902" /translation="MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVT NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAW GGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKN RPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQ FCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSA GAIGLLGGVVGLVAGVSVMAVRELGRQQKKDNADSRGE" gene complement(3146450..3146737) /gene="yghW" /locus_tag="b2998" /gene_synonym="ECK2992; JW2966" /db_xref="EcoGene:EG13007" /db_xref="GeneID:947485" CDS complement(3146450..3146737) /gene="yghW" /locus_tag="b2998" /gene_synonym="ECK2992; JW2966" /codon_start=1 /transl_table=11 /product="DUF2623 family protein" /protein_id="NP_417472.1" /db_xref="GI:16130898" /db_xref="ASAP:ABE-0009839" /db_xref="UniProtKB/Swiss-Prot:P64574" /db_xref="EcoGene:EG13007" /db_xref="GeneID:947485" /translation="MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMY EKTGDRQLSAWEAGILTRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN" gene complement(3146856..3147691) /gene="yghX" /locus_tag="b4658" /gene_synonym="ECK2993; JW5926; yghY" /pseudo /db_xref="EcoGene:EG13008" /db_xref="GeneID:2847694" CDS complement(join(3146856..3147272,3147272..3147691)) /gene="yghX" /locus_tag="b4658" /gene_synonym="ECK2993; JW5926; yghY" /note="pseudogene, dienlactone hydrolase family" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0009842" /db_xref="ASAP:ABE-0009844" /db_xref="UniProtKB/Swiss-Prot:Q7DFU6" /db_xref="EcoGene:EG13008" /db_xref="GeneID:2847694" gene 3147897..3148937 /gene="gpr" /locus_tag="b3001" /gene_synonym="ECK2995; JW2970; mgrA; yghZ" /db_xref="EcoGene:EG13010" /db_xref="GeneID:947480" CDS 3147897..3148937 /gene="gpr" /locus_tag="b3001" /gene_synonym="ECK2995; JW2970; mgrA; yghZ" /GO_function="GO:0005244 - voltage-gated ion channel activity" /note="putative reductase" /codon_start=1 /transl_table=11 /product="L-glyceraldehyde 3-phosphate reductase" /protein_id="NP_417474.1" /db_xref="GI:16130899" /db_xref="ASAP:ABE-0009848" /db_xref="UniProtKB/Swiss-Prot:Q46851" /db_xref="EcoGene:EG13010" /db_xref="GeneID:947480" /translation="MVWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALES QRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDM WPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSG KALYVGISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVG CIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQ RGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTKELAQIDQHIAD GELNLWQASSDK" gene complement(3148977..3149471) /gene="yqhA" /locus_tag="b3002" /gene_synonym="ECK2996; JW2971" /db_xref="EcoGene:EG13011" /db_xref="GeneID:947479" CDS complement(3148977..3149471) /gene="yqhA" /locus_tag="b3002" /gene_synonym="ECK2996; JW2971" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="UPF0114 family putative inner membrane protein" /protein_id="NP_417475.1" /db_xref="GI:16130900" /db_xref="ASAP:ABE-0009850" /db_xref="UniProtKB/Swiss-Prot:P67244" /db_xref="EcoGene:EG13011" /db_xref="GeneID:947479" /translation="MERFLENAMYASRWLLAPVYFGLSLALVALALKFFQEIIHVLPN IFSMAESDLILVLLSLVDMTLVGGLLVMVMFSGYENFVSQLDISENKEKLNWLGKMDA TSLKNKVAASIVAISSIHLLRVFMDAKNVPDNKLMWYVIIHLTFVLSAFVMGYLDRLT RHNH" gene 3149662..3150546 /gene="yghA" /locus_tag="b3003" /gene_synonym="ECK2997; JW2972" /db_xref="EcoGene:EG11292" /db_xref="GeneID:947478" CDS 3149662..3150546 /gene="yghA" /locus_tag="b3003" /gene_synonym="ECK2997; JW2972" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_417476.1" /db_xref="GI:16130901" /db_xref="ASAP:ABE-0009859" /db_xref="UniProtKB/Swiss-Prot:P0AG84" /db_xref="EcoGene:EG11292" /db_xref="GeneID:947478" /translation="MSHLKDPTTQYYTGEYPKQKQPTPGIQAKMTPVPDCGEKTYVGS GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKA VLLPGDLSDEKFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAIN VFALFWLTQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVA EKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQE SSYVTAEVHGVCGGEHLG" repeat_region 3150554..3150808 /note="RIP222 (repetitive extragenic palindromic) element; contains 5 REP sequences and 2 IHF sites" gene complement(3150818..3151243) /gene="exbD" /locus_tag="b3005" /gene_synonym="ECK2998; JW2973" /db_xref="EcoGene:EG10272" /db_xref="GeneID:946345" CDS complement(3150818..3151243) /gene="exbD" /locus_tag="b3005" /gene_synonym="ECK2998; JW2973" /function="transport; Transport of small molecules: Cations" /GO_process="GO:0006826 - iron ion transport" /note="uptake of enterochelin; tonB-dependent uptake of B colicins" /codon_start=1 /transl_table=11 /product="membrane spanning protein in TonB-ExbB-ExbD complex" /protein_id="NP_417478.1" /db_xref="GI:16130903" /db_xref="ASAP:ABE-0009866" /db_xref="UniProtKB/Swiss-Prot:P0ABV2" /db_xref="EcoGene:EG10272" /db_xref="GeneID:946345" /translation="MAMHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVD VKVNLPASTSTPQPRPEKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTI FFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEETAKAK" gene complement(3151250..3151984) /gene="exbB" /locus_tag="b3006" /gene_synonym="ECK2999; JW2974" /db_xref="EcoGene:EG10271" /db_xref="GeneID:945420" CDS complement(3151250..3151984) /gene="exbB" /locus_tag="b3006" /gene_synonym="ECK2999; JW2974" /function="transport; Transport of small molecules: Cations" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006826 - iron ion transport" /note="uptake of enterochelin; tonB-dependent uptake of B colicins" /codon_start=1 /transl_table=11 /product="membrane spanning protein in TonB-ExbB-ExbD complex" /protein_id="NP_417479.1" /db_xref="GI:16130904" /db_xref="ASAP:ABE-0009869" /db_xref="UniProtKB/Swiss-Prot:P0ABU7" /db_xref="EcoGene:EG10271" /db_xref="GeneID:945420" /translation="MGNNLMQTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSK SVEFFNQKRRLKREQQLLAEARSLNQANDIAADFGSKSLSLHLLNEAQNELELSEGSD DNEGIKERTSFRLERRVAAVGRQMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIA QTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNVFARQIGGFKAMLGDVAAQVLL LQSRDLDLEASAAAHPVRVAQKLRAG" gene 3152236..3153423 /gene="metC" /locus_tag="b3008" /gene_synonym="ECK3000; JW2975" /db_xref="EcoGene:EG10583" /db_xref="GeneID:946240" CDS 3152236..3153423 /gene="metC" /locus_tag="b3008" /gene_synonym="ECK3000; JW2975" /EC_number="4.4.1.8" /function="enzyme; Amino acid biosynthesis: Methionine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009086 - methionine biosynthetic process" /note="cystathionine beta-lyase (beta-cystathionase)" /codon_start=1 /transl_table=11 /product="cystathionine beta-lyase, PLP-dependent" /protein_id="NP_417481.1" /db_xref="GI:16130906" /db_xref="ASAP:ABE-0009878" /db_xref="UniProtKB/Swiss-Prot:P06721" /db_xref="EcoGene:EG10583" /db_xref="GeneID:946240" /translation="MADKKLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFDSVEAKKH ATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAFIEQGD HVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSIT MEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDA MIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEW LAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLF SMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFA RIV" gene 3153563..3154222 /gene="yghB" /locus_tag="b3009" /gene_synonym="ECK3001; JW2976" /db_xref="EcoGene:EG11824" /db_xref="GeneID:947490" CDS 3153563..3154222 /gene="yghB" /locus_tag="b3009" /gene_synonym="ECK3001; JW2976" /function="membrane; inner membrane; cell division" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter" /protein_id="NP_417482.1" /db_xref="GI:16130907" /db_xref="ASAP:ABE-0009882" /db_xref="UniProtKB/Swiss-Prot:P0AA60" /db_xref="EcoGene:EG11824" /db_xref="GeneID:947490" /translation="MAVIQDIIAALWQHDFAALADPHIVSVVYFVMFATLFLENGLLP ASFLPGDSLLILAGALIAQGVMDFLPTIAILTAAASLGCWLSYIQGRWLGNTKTVKGW LAQLPAKYHQRATCMFDRHGLLALLAGRFLAFVRTLLPTMAGISGLPNRRFQFFNWLS GLLWVSVVTSFGYALSMIPFVKRHEDQVMTFLMILPIALLTAGLLGTLFVVIKKKYCN A" gene complement(3154262..3155218) /gene="yqhC" /locus_tag="b3010" /gene_synonym="ECK3002; JW5849" /db_xref="EcoGene:EG13013" /db_xref="GeneID:947491" CDS complement(3154262..3155218) /gene="yqhC" /locus_tag="b3010" /gene_synonym="ECK3002; JW5849" /function="regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription" /note="putative ARAC-type regulatory protein" /codon_start=1 /transl_table=11 /product="transcriptional activator of yqhD" /protein_id="NP_417483.2" /db_xref="GI:90111526" /db_xref="ASAP:ABE-0009884" /db_xref="UniProtKB/Swiss-Prot:Q46855" /db_xref="EcoGene:EG13013" /db_xref="GeneID:947491" /translation="MLQNCAQSNCRIIPKKLRDMKREEICRLLADKVNKLKNKENSLS GLLPDVRLLYGETPFARTPVMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLP FECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPSMAASGINSATLSEEILC AAERLLDVMERPLDARILGKQIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKR IENKYTENLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGM KASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRAMQGN" gene 3155355..3156518 /gene="yqhD" /locus_tag="b3011" /gene_synonym="ECK3003; JW2978" /db_xref="EcoGene:EG13014" /db_xref="GeneID:947493" CDS 3155355..3156518 /gene="yqhD" /locus_tag="b3011" /gene_synonym="ECK3003; JW2978" /function="enzyme; Degradation of small molecules: Carbon compounds" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="aldehyde reductase, NADPH-dependent" /protein_id="NP_417484.1" /db_xref="GI:16130909" /db_xref="ASAP:ABE-0009888" /db_xref="UniProtKB/Swiss-Prot:Q46856" /db_xref="EcoGene:EG13014" /db_xref="GeneID:947493" /translation="MNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKT GVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTK FIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDK QAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIQDRFAE GILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAM HGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFF EQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR" gene 3156623..3157450 /gene="dkgA" /locus_tag="b3012" /gene_synonym="ECK3004; JW5499; yqhE" /db_xref="EcoGene:EG13015" /db_xref="GeneID:947495" CDS 3156623..3157450 /gene="dkgA" /locus_tag="b3012" /gene_synonym="ECK3004; JW5499; yqhE" /EC_number="1.1.1.274" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="2,5-diketo-D-gluconate reductase A" /protein_id="NP_417485.4" /db_xref="GI:90111527" /db_xref="ASAP:ABE-0009892" /db_xref="UniProtKB/Swiss-Prot:Q46857" /db_xref="EcoGene:EG13015" /db_xref="GeneID:947495" /translation="MANPTVIKLQDGNVMPQLGLGVWQASNEEVITAIQKALEVGYRS IDTAAAYKNEEGVGKALKNASVNREELFITTKLWNDDHKRPREALLDSLKKLQLDYID LYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQ IELHPLMQQRQLHAWNATHKIQTESWSPLAQGGKGVFDQKVIRDLADKYGKTPAQIVI RWHLDSGLVVIPKSVTPSRIAENFDVWDFRLDKDELGEIAKLDQGKRLGPDPDQFGG" gene 3157650..3158576 /gene="yqhG" /locus_tag="b3013" /gene_synonym="ECK3005; JW5500; yqhF" /db_xref="EcoGene:EG13017" /db_xref="GeneID:945919" CDS 3157650..3158576 /gene="yqhG" /locus_tag="b3013" /gene_synonym="ECK3005; JW5500; yqhF" /codon_start=1 /transl_table=11 /product="DUF3828 family putative periplasmic protein" /protein_id="YP_026195.1" /db_xref="GI:49176301" /db_xref="ASAP:ABE-0009895" /db_xref="UniProtKB/Swiss-Prot:Q46858" /db_xref="EcoGene:EG13017" /db_xref="GeneID:945919" /translation="MKIILLFLAALASFTVHAQPPSQTVEQTVRHIYQNYKSDATAPY FGETGERAITSARIQQALTLNDNLTLPGNIGWLDYDPVCDCQDFGDLVLESVAITQTD ADHADAVVRFRIFKDDKEKTTQTLKMVAENGRWVIDDIVSNHGSVLQAVNSENEKTLA ALASLQKEQPEAFVAELFEHIADYSWPWTWVVSDSYRQAVNAFYKTTFKTANNPDEDM QIERQFIYDNPICFGEESLFSRVDEIRVLEKTADSARIHVRFTLTNGNNEEQELVLQR REGKWEIADFIRPNSGSLLKQIEAKTAARLKQ" gene 3158627..3158884 /gene="yqhH" /locus_tag="b3014" /gene_synonym="ECK3006; JW2982" /db_xref="EcoGene:EG13018" /db_xref="GeneID:946832" CDS 3158627..3158884 /gene="yqhH" /locus_tag="b3014" /gene_synonym="ECK3006; JW2982" /GO_component="GO:0009279 - cell outer membrane" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein, Lpp paralog" /protein_id="NP_417487.1" /db_xref="GI:16130912" /db_xref="ASAP:ABE-0009898" /db_xref="UniProtKB/Swiss-Prot:P65298" /db_xref="EcoGene:EG13018" /db_xref="GeneID:946832" /translation="MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLE QDMKALRPQIYAAKSEANRANTRLDAQDYFDCLRCLRMYAE" gene complement(3158927..3161146) /gene="ygiQ" /locus_tag="b4469" /gene_synonym="ECK3007; JW5501; ygiR" /db_xref="EcoGene:EG13019" /db_xref="GeneID:948963" CDS complement(3158927..3161146) /gene="ygiQ" /locus_tag="b4469" /gene_synonym="ECK3007; JW5501; ygiR" /codon_start=1 /transl_table=11 /product="Radical SAM superfamily protein" /protein_id="YP_026196.1" /db_xref="GI:49176302" /db_xref="ASAP:ABE-0174099" /db_xref="UniProtKB/Swiss-Prot:Q46861" /db_xref="EcoGene:EG13019" /db_xref="GeneID:948963" /translation="MSSISLIQPDRDLFSWPQYWAACFGPAPFLPMSREEMDQLGWDS CDIILVTGDAYVDHPSFGMAICGRMLEAQGFRVGIIAQPDWSSKDDFMRLGKPNLFFG VTAGNMDSMINRYTADRRLRHDDAYTPDNVAGKRPDRATLVYTQRCKEAWKDVPVILG GIEASLRRTAHYDYWSDTVRRSVLVDSKADMLMFGNGERPLVEVAHRLAMGEPISEIR DVRNTAIIVKEALPGWSGVDSTRLDTPGKIDPIPHPYGEDLPCADNKPVAPKKQEAKA VTVQPPRPKPWEKTYVLLPSFEKVKGDKVLYAHASRILHHETNPGCARALMQKHGDRY VWINPPAIPLSTEEMDSVFALPYKRVPHPAYGNARIPAYEMIRFSVNIMRGCFGGCSF CSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANMYMLRCKSPRAE QTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYDIAVEDPRYI KELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGKEQYLIPY FISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLAKIGYK SEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLVPAPTIE EMREARRQNRNTRPALTKHTPMATQRQTPATAKKASSTQSRPVNAGAKKRPKAAVGR" gene complement(3161257..3162669) /gene="ftsP" /locus_tag="b3017" /gene_synonym="ECK3008; JW2985; sufI; sui; ygiJ" /db_xref="EcoGene:EG11376" /db_xref="GeneID:944982" CDS complement(3161257..3162669) /gene="ftsP" /locus_tag="b3017" /gene_synonym="ECK3008; JW2985; sufI; sui; ygiJ" /function="phenotype; Not classified" /note="suppressor of ftsI" /codon_start=1 /transl_table=11 /product="septal ring component that protects the divisome from stress; multicopy suppressor of ftsI(Ts)" /protein_id="NP_417489.1" /db_xref="GI:16130913" /db_xref="ASAP:ABE-0009905" /db_xref="UniProtKB/Swiss-Prot:P26648" /db_xref="EcoGene:EG11376" /db_xref="GeneID:944982" /translation="MSLSRRQFIQASGIALCAGAVPLKASAAGQQQPLPVPPLLESRR GQPLFMTVQRAHWSFTPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMT VAGLQVPGPLMGGPARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGM WLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQ SPYVEVSRGWVRLRLLNASNSRRYQLQMNDGRPLHVISGDQGFLPAPVSVKQLSLAPG ERREILVDMSNGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTD SLPMRLLPTEIMAGSPIRSRDISLGDDPGINGQLWDVNRIDVTAQQGTWERWTVRADE PQAFHIEGVMFQIRNVNGAMPFPEDRGWKDTVWVDGQVELLVYFGQPSWAHFPFYFNS QTLEMADRGSIGQLLVNPVP" gene complement(3162744..3163481) /gene="plsC" /locus_tag="b3018" /gene_synonym="ECK3009; JW2986; parF" /db_xref="EcoGene:EG11377" /db_xref="GeneID:947496" CDS complement(3162744..3163481) /gene="plsC" /locus_tag="b3018" /gene_synonym="ECK3009; JW2986; parF" /EC_number="2.3.1.51" /function="enzyme; Macromolecule synthesis, modification: Phospholipids" /experiment="N-terminus verified by Edman degradation: PMID 1557036" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0008654 - phospholipid biosynthetic process" /codon_start=1 /transl_table=11 /product="1-acyl-sn-glycerol-3-phosphate acyltransferase" /protein_id="NP_417490.1" /db_xref="GI:16130914" /db_xref="ASAP:ABE-0009910" /db_xref="UniProtKB/Swiss-Prot:P26647" /db_xref="EcoGene:EG11377" /db_xref="GeneID:947496" /translation="MLYIFRLIITVIYSILVCVFGSIYCLFSPRNPKHVATFGHMFGR LAPLFGLKVECRKPTDAESYGNAIYIANHQNNYDMVTASNIVQPPTVTVGKKSLLWIP FFGQLYWLTGNLLIDRNNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGRGLLPFK TGAFHAAIAAGVPIIPVCVSTTSNKINLNRLHNGLVIVEMLPPIDVSQYGKDQVRELA AHCRSIMEQKIAELDKEVAEREAAGKV" repeat_region 3163644..3163673 /note="REP223 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(3163715..3165973) /gene="parC" /locus_tag="b3019" /gene_synonym="ECK3010; JW2987" /db_xref="EcoGene:EG10686" /db_xref="GeneID:947499" CDS complement(3163715..3165973) /gene="parC" /locus_tag="b3019" /gene_synonym="ECK3010; JW2987" /EC_number="5.99.1.-" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication" /note="DNA topoisomerase IV subunit A" /codon_start=1 /transl_table=11 /product="DNA topoisomerase IV, subunit A" /protein_id="NP_417491.1" /db_xref="GI:16130915" /db_xref="ASAP:ABE-0009916" /db_xref="UniProtKB/Swiss-Prot:P0AFI2" /db_xref="EcoGene:EG10686" /db_xref="GeneID:947499" /translation="MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRR IVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG QGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPAR LPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTE AEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRN KKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL DGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEI IRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG WVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ GEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARG EDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID SPRRASSGDSEE" gene complement(3166111..3167718) /gene="ygiS" /locus_tag="b3020" /gene_synonym="ECK3011; JW2988" /db_xref="EcoGene:EG13021" /db_xref="GeneID:947140" CDS complement(3166111..3167718) /gene="ygiS" /locus_tag="b3020" /gene_synonym="ECK3011; JW2988" /function="putative transport; Not classified" /GO_component="GO:0042597 - periplasmic space" /note="putative transport periplasmic protein" /codon_start=1 /transl_table=11 /product="putative ABC transporter permease" /protein_id="NP_417492.1" /db_xref="GI:16130916" /db_xref="ASAP:ABE-0009920" /db_xref="UniProtKB/Swiss-Prot:Q46863" /db_xref="EcoGene:EG13021" /db_xref="GeneID:947140" /translation="MYTRNLLWLVSLVSAAPLYAADVPANTPLAPQQVFRYNNHSDPG TLDPQKVEENTAAQIVLDLFEGLVWMDGEGQVQPAQAERWEILDGGKRYIFHLRSGLQ WSDGQPLTAEDFVLGWQRAVDPKTASPFAGYLAQAHINNAAAIVAGKADVTSLGVKAT DDRTLEVTLEQPVPWFTTMLAWPTLFPVPHHVIAKHGDSWSKPENMVYNGAFVLDQWV VNEKITARKNPKYRDAQHTVLQQVEYLALDNSVTGYNRYRAGEVDLTWVPAQQIPAIE KSLPGELRIIPRLNSEYYNFNLEKPPFNDVRVRRALYLTVDRQLIAQKVLGLRTPATT LTPPEVKGFSATTFDELQKPMSERVAMAKALLKQAGYDASHPLRFELFYNKYDLHEKT AIALSSEWKKWLGAQVTLRTMEWKTYLDARRAGDFMLSRQSWDATYNDASSFLNTLKS DSEENVGHWKNAQYDALLNQATQITDATKRNALYQQAEVIINQQAPLIPIYYQPLIKL LKPYVGGFPLHNPQDYVYSKELYIKAH" gene complement(3167851..3168246) /gene="mqsA" /locus_tag="b3021" /gene_synonym="ECK3012; JW2989; ygiT" /db_xref="EcoGene:EG13022" /db_xref="GeneID:945814" CDS complement(3167851..3168246) /gene="mqsA" /locus_tag="b3021" /gene_synonym="ECK3012; JW2989; ygiT" /codon_start=1 /transl_table=11 /product="antitoxin for MqsR toxin; transcriptional repressor" /protein_id="NP_417493.1" /db_xref="GI:16130917" /db_xref="ASAP:ABE-0009923" /db_xref="UniProtKB/Swiss-Prot:Q46864" /db_xref="EcoGene:EG13022" /db_xref="GeneID:945814" /translation="MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESI MNKEESDAFMAQVKAFRASVNAETVAPEFIVKVRKKLSLTQKEASEIFGGGVNAFSRY EKGNAQPHPSTIKLLRVLDKHPELLNEIR" gene complement(3168248..3168544) /gene="mqsR" /locus_tag="b3022" /gene_synonym="ECK3013; JW2990; ygiU" /db_xref="EcoGene:EG13023" /db_xref="GeneID:947500" CDS complement(3168248..3168544) /gene="mqsR" /locus_tag="b3022" /gene_synonym="ECK3013; JW2990; ygiU" /codon_start=1 /transl_table=11 /product="GCU-specific mRNA interferase toxin of the MqsR-MqsA toxin-antitoxin system; biofilm/motility regulator; anti-repressor" /protein_id="NP_417494.1" /db_xref="GI:16130918" /db_xref="ASAP:ABE-0009925" /db_xref="UniProtKB/Swiss-Prot:Q46865" /db_xref="EcoGene:EG13023" /db_xref="GeneID:947500" /translation="MEKRTPHTRLSQVKKLVNAGQVRTTRSALLNADELGLDFDGMCN VIIGLSESDFYKSMTTYSDHTIWQDVYRPRLVTGQVYLKITVIHDVLIVSFKEK" gene complement(3168749..3169231) /gene="ygiV" /locus_tag="b3023" /gene_synonym="ECK3014; JW5502" /db_xref="EcoGene:EG13024" /db_xref="GeneID:945805" CDS complement(3168749..3169231) /gene="ygiV" /locus_tag="b3023" /gene_synonym="ECK3014; JW5502" /codon_start=1 /transl_table=11 /product="transcriptional repressor for mcbR biofilm gene" /protein_id="YP_026197.1" /db_xref="GI:49176303" /db_xref="ASAP:ABE-0009928" /db_xref="UniProtKB/Swiss-Prot:Q46866" /db_xref="EcoGene:EG13024" /db_xref="GeneID:945805" /translation="MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKET GLSPVNQSQTFGVAWDDPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVA RHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA " gene complement(3169284..3169676) /gene="ygiW" /locus_tag="b3024" /gene_synonym="ECK3015; JW2992" /db_xref="EcoGene:EG13025" /db_xref="GeneID:946051" CDS complement(3169284..3169676) /gene="ygiW" /locus_tag="b3024" /gene_synonym="ECK3015; JW2992" /codon_start=1 /transl_table=11 /product="hydrogen peroxide and cadmium resistance periplasmic protein; stress-induced OB-fold protein" /protein_id="NP_417496.1" /db_xref="GI:16130920" /db_xref="ASAP:ABE-0009930" /db_xref="UniProtKB/Swiss-Prot:P0ADU5" /db_xref="EcoGene:EG13025" /db_xref="GeneID:946051" /translation="MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNG SVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPK DTVEIQGEVDKDWNSVEIDVKQIRKVNP" gene 3169828..3170487 /gene="qseB" /locus_tag="b3025" /gene_synonym="ECK3016; JW2993; preA; ygiX" /db_xref="EcoGene:EG13026" /db_xref="GeneID:945369" CDS 3169828..3170487 /gene="qseB" /locus_tag="b3025" /gene_synonym="ECK3016; JW2993; preA; ygiX" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent" /note="putative 2-component transcriptional regulator" /codon_start=1 /transl_table=11 /product="quorum sensing DNA-binding response regulator in two-component regulatory system with QseC" /protein_id="NP_417497.1" /db_xref="GI:16130921" /db_xref="ASAP:ABE-0009936" /db_xref="UniProtKB/Swiss-Prot:P52076" /db_xref="EcoGene:EG13026" /db_xref="GeneID:945369" /translation="MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAP YDAVILDLTLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKP FALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL LMRNAGRVLSRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE K" gene 3170484..3171833 /gene="qseC" /locus_tag="b3026" /gene_synonym="ECK3017; JW2994; preB; ygiY" /db_xref="EcoGene:EG13027" /db_xref="GeneID:947174" CDS 3170484..3171833 /gene="qseC" /locus_tag="b3026" /gene_synonym="ECK3017; JW2994; preB; ygiY" /GO_process="GO:0006464 - protein modification process" /note="putative 2-component sensor protein" /codon_start=1 /transl_table=11 /product="quorum sensing sensory histidine kinase in two-component regulatory system with QseB" /protein_id="NP_417498.1" /db_xref="GI:16130922" /db_xref="ASAP:ABE-0009938" /db_xref="UniProtKB/Swiss-Prot:P40719" /db_xref="EcoGene:EG13027" /db_xref="GeneID:947174" /translation="MKFTQRLSLRVRLTLIFLILASVTWLLSSFVAWKQTTDNVDELF DTQLMLFAKRLSTLDLNEINAADRMAQTPNRLKHGHVDDDALTFAIFTHDGRMVLNDG DNGEDIPYSYQREGFADGQLVGEDDPWRFVWMTSPDGKYRIVVGQEWEYREDMALAIV AGQLIPWLVALPIMLIIMMVLLGRELAPLNKLALALRMRDPDSEKPLNATGVPSEVRP LVESLNQLFARTHAMMVRERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKAL LQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKID VRLTLNAHSIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNADNFIVRDNGPGV TPEALARIGERFYRPPGQTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSW" gene complement(3171879..3172211) /gene="ygiZ" /locus_tag="b3027" /gene_synonym="ECK3018; JW2995" /db_xref="EcoGene:EG13028" /db_xref="GeneID:946450" CDS complement(3171879..3172211) /gene="ygiZ" /locus_tag="b3027" /gene_synonym="ECK3018; JW2995" /codon_start=1 /transl_table=11 /product="inner membrane protein" /protein_id="NP_417499.1" /db_xref="GI:16130923" /db_xref="ASAP:ABE-0009940" /db_xref="UniProtKB/Swiss-Prot:Q46867" /db_xref="EcoGene:EG13028" /db_xref="GeneID:946450" /translation="MLKQKIKTIFEALLYIMLTYWLIDSFFAFNKYDWMLESGGNICS IPSVSGEDRILQAMIAAFFLLTPLIILILRKLFMREMFEFWVYVFSLGICLVCGWWLF WGRFIFCY" gene 3172530..3173111 /gene="mdaB" /locus_tag="b3028" /gene_synonym="ECK3019; JW2996; mda66" /db_xref="EcoGene:EG12656" /db_xref="GeneID:947512" CDS 3172530..3173111 /gene="mdaB" /locus_tag="b3028" /gene_synonym="ECK3019; JW2996; mda66" /EC_number="1.6.5.10" /function="phenotype; Not classified" /GO_process="GO:0042493 - response to drug" /note="modulator of drug activity B" /codon_start=1 /transl_table=11 /product="NADPH quinone reductase" /protein_id="NP_417500.1" /db_xref="GI:16130924" /db_xref="ASAP:ABE-0009946" /db_xref="UniProtKB/Swiss-Prot:P0AEY5" /db_xref="EcoGene:EG12656" /db_xref="GeneID:947512" /translation="MSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRA DSDYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRK DPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGM EPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG" gene 3173142..3173456 /gene="ygiN" /locus_tag="b3029" /gene_synonym="ECK3020; JW2997" /db_xref="EcoGene:EG12657" /db_xref="GeneID:947506" CDS 3173142..3173456 /gene="ygiN" /locus_tag="b3029" /gene_synonym="ECK3020; JW2997" /experiment="N-terminus verified by Edman degradation: PMID 9298646,9600841,9740056,9868784" /codon_start=1 /transl_table=11 /product="quinol monooxygenase" /protein_id="NP_417501.1" /db_xref="GI:16130925" /db_xref="ASAP:ABE-0009948" /db_xref="UniProtKB/Swiss-Prot:P0ADU2" /db_xref="EcoGene:EG12657" /db_xref="GeneID:947506" /translation="MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMV DCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVLEMNIRILQP GI" gene complement(3173504..3175396) /gene="parE" /locus_tag="b3030" /gene_synonym="ECK3021; JW2998; nfxD" /db_xref="EcoGene:EG10687" /db_xref="GeneID:947501" CDS complement(3173504..3175396) /gene="parE" /locus_tag="b3030" /gene_synonym="ECK3021; JW2998; nfxD" /EC_number="5.99.1.-" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication" /note="DNA topoisomerase IV subunit B" /codon_start=1 /transl_table=11 /product="DNA topoisomerase IV, subunit B" /protein_id="NP_417502.1" /db_xref="GI:16130926" /db_xref="ASAP:ABE-0009950" /db_xref="UniProtKB/Swiss-Prot:P20083" /db_xref="EcoGene:EG10687" /db_xref="GeneID:947501" /translation="MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSV DEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN KNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRN TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDG LNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK ERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLT SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV SSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVK HFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGL GEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD MAEIEV" gene complement(3175425..3176006) /gene="yqiA" /locus_tag="b3031" /gene_synonym="ECK3022; JW2999; yzzI" /db_xref="EcoGene:EG12186" /db_xref="GeneID:947488" CDS complement(3175425..3176006) /gene="yqiA" /locus_tag="b3031" /gene_synonym="ECK3022; JW2999; yzzI" /codon_start=1 /transl_table=11 /product="acyl CoA esterase" /protein_id="NP_417503.1" /db_xref="GI:16130927" /db_xref="ASAP:ABE-0009953" /db_xref="UniProtKB/Swiss-Prot:P0A8Z7" /db_xref="EcoGene:EG12186" /db_xref="GeneID:947488" /translation="MSTLLYLHGFNSSPRSAKASLLKNWLAEHHPDVEMIIPQLPPYP SDAAELLESIVLEHGGDSLGIVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDY LGQNENPYTGQQYVLESRHIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYA SCRQTVIEGGNHAFTGFEDYFNPIVDFLGLHHL" gene complement(3176006..3176833) /gene="cpdA" /locus_tag="b3032" /gene_synonym="ECK3023; icc; JW3000" /db_xref="EcoGene:EG12187" /db_xref="GeneID:947515" CDS complement(3176006..3176833) /gene="cpdA" /locus_tag="b3032" /gene_synonym="ECK3023; icc; JW3000" /EC_number="3.1.4.17" /function="regulator; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 8810311" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0008233 - peptidase activity" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="3',5' cAMP phosphodiesterase" /protein_id="NP_417504.1" /db_xref="GI:16130928" /db_xref="ASAP:ABE-0009957" /db_xref="UniProtKB/Swiss-Prot:P0AEW4" /db_xref="EcoGene:EG12187" /db_xref="GeneID:947515" /translation="MESLLTLPLAGEARVRILQITDTHLFAQKHEALLGVNTWESYQA VLEAIRPHQHEFDLIVATGDLAQDQSSAAYQHFAEGIASFRAPCVWLPGNHDFQPAMY SALQDAGISPAKRVFIGEQWQILLLDSQVFGVPHGELSEFQLEWLERKLADAPERHTL LLLHHHPLPAGCSWLDQHSLRNAGELDTVLAKFPHVKYLLCGHIHQELDLDWNGRRLL ATPSTCVQFKPHCSNFTLDTIAPGWRTLELHADGTLTTEVHRLADTRFQPDTASEGY" gene complement(3176858..3177280) /gene="yqiB" /locus_tag="b3033" /gene_synonym="ECK3024; JW3001; yzzH" /db_xref="EcoGene:EG12185" /db_xref="GeneID:947518" CDS complement(3176858..3177280) /gene="yqiB" /locus_tag="b3033" /gene_synonym="ECK3024; JW3001; yzzH" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="DUF1249 protein YqiB" /protein_id="NP_417505.1" /db_xref="GI:16130929" /db_xref="ASAP:ABE-0009959" /db_xref="UniProtKB/Swiss-Prot:P0ADU7" /db_xref="EcoGene:EG12185" /db_xref="GeneID:947518" /translation="MKRYTPDFPEMMRLCEMNFSQLRRLLPRNDAPGETVSYQVANAQ YRLTIVESTRYTTLVTIEQTAPAISYWSLPSMTVRLYHDAMVAEVCSSQQIFRFKARY DYPNKKLHQRDEKHQINQFLADWLRYCLAHGAMAIPVY" gene complement(3177281..3177910) /gene="nudF" /locus_tag="b3034" /gene_synonym="adpP; aspP; ECK3025; JW3002; rdsA; trgB; yqiE; yzzG" /db_xref="EcoGene:EG12184" /db_xref="GeneID:947519" CDS complement(3177281..3177910) /gene="nudF" /locus_tag="b3034" /gene_synonym="adpP; aspP; ECK3025; JW3002; rdsA; trgB; yqiE; yzzG" /EC_number="3.6.1.13" /experiment="N-terminus verified by Edman degradation: PMID 11416161,11997136" /codon_start=1 /transl_table=11 /product="ADP-ribose pyrophosphatase" /protein_id="NP_417506.1" /db_xref="GI:16130930" /db_xref="ASAP:ABE-0009961" /db_xref="UniProtKB/Swiss-Prot:Q93K97" /db_xref="EcoGene:EG12184" /db_xref="GeneID:947519" /translation="MLKPDNLPVTFGKNDVEIIARETLYRGFFSLDLYRFRHRLFNGQ MSHEVRREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEG ESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLA DENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQLHHQALKNEWA" gene 3178115..3179596 /gene="tolC" /locus_tag="b3035" /gene_synonym="colE1-i; ECK3026; JW5503; mtcB; mukA; refI; toc; weeA" /db_xref="EcoGene:EG11009" /db_xref="GeneID:947521" CDS 3178115..3179596 /gene="tolC" /locus_tag="b3035" /gene_synonym="colE1-i; ECK3026; JW5503; mtcB; mukA; refI; toc; weeA" /function="putative membrane; Cell division" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes" /codon_start=1 /transl_table=11 /product="transport channel" /protein_id="NP_417507.2" /db_xref="GI:90111528" /db_xref="ASAP:ABE-0009965" /db_xref="UniProtKB/Swiss-Prot:P02930" /db_xref="EcoGene:EG11009" /db_xref="GeneID:947521" /translation="MKKLLPILIGLSLSGFSSLSQAENLMQVYQQARLSNPELRKSAA DRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGINSNATSASLQLTQSIFDMSK WRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLD QTTQRFNVGLVAITDVQNARAQYDTVLANEVTARNNLDNAVEQLRQITGNYYPELAAL NVENFKTDKPQPVNALLKEAEKRNLSLLQARLSQDLAREQIRQAQDGHLPTLDLTAST GISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGA SEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIV DVLDATTTLYNAKQELANARYNYLINQLNIKSALGTLNEQDLLALNNALSKPVSTNPE NVAPQTPEQNAIADGYAPDSPAPVVQQTSARTTTSNGHNPFRN" gene 3179744..3180415 /gene="ygiB" /locus_tag="b3037" /gene_synonym="ECK3028; JW5927" /db_xref="EcoGene:EG11164" /db_xref="GeneID:945086" CDS 3179744..3180415 /gene="ygiB" /locus_tag="b3037" /gene_synonym="ECK3028; JW5927" /codon_start=1 /transl_table=11 /product="DUF1190 family protein" /protein_id="NP_417509.3" /db_xref="GI:145698308" /db_xref="ASAP:ABE-0009969" /db_xref="UniProtKB/Swiss-Prot:P0ADT2" /db_xref="EcoGene:EG11164" /db_xref="GeneID:945086" /translation="MKRTKSIRHASFRKNWSARHLTPVALAVATVFMLAGCEKSDETV SLYQNADDCSAANPGKSAECTTAYNNALKEAERTAPKYATREDCVAEFGEGQCQQAPA QAGMAPENQAQAQQSSGSFWMPLMAGYMMGRLMGGGAGFAQQPLFSSKNPASPAYGKY TDATGKNYGAAQPGRTMTVPKTAMAPKPATTTTVTRGGFGESVAKQSTMQRSATGTSS RSMGG" gene 3180421..3181581 /gene="ygiC" /locus_tag="b3038" /gene_synonym="ECK3029; JW3006" /db_xref="EcoGene:EG11165" /db_xref="GeneID:947249" CDS 3180421..3181581 /gene="ygiC" /locus_tag="b3038" /gene_synonym="ECK3029; JW3006" /function="putative enzyme; Not classified" /note="putative synthetase/amidase" /codon_start=1 /transl_table=11 /product="ATP-Grasp family ATPase" /protein_id="NP_417510.1" /db_xref="GI:16130934" /db_xref="ASAP:ABE-0009971" /db_xref="UniProtKB/Swiss-Prot:P0ADT5" /db_xref="EcoGene:EG11165" /db_xref="GeneID:947249" /translation="MERVSITERPDWREKAHEYGFNFHTMYGEPYWCEDAYYKLTLAQ VEKLEEVTAELHQMCLKVVEKVIASDELMTKFRIPKHTWSFVRQSWLTHQPSLYSRLD LAWDGTGEPKLLENNADTPTSLYEAAFFQWIWLEDQLNAGNLPEGSDQFNSLQEKLID RFVELREQYGFQLLHLTCCRDTVEDRGTIQYLQDCATEAEIATEFLYIDDIGLGEKGQ FTDLQDQVISNLFKLYPWEFMLREMFSTKLEDAGVRWLEPAWKSIISNKALLPLLWEM FPNHPNLLPAYFAEDDHPQMEKYVVKPIFSREGANVSIIENGKTIEAAEGPYGEEGMI VQQFHPLPKFGDSYMLIGSWLVNDQPAGIGIREDRALITQDMSRFYPHIFVE" repeat_region 3181590..3181613 /note="REP224 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(3181619..3182407) /gene="ygiD" /locus_tag="b3039" /gene_synonym="ECK3030; JW3007" /db_xref="EcoGene:EG11166" /db_xref="GeneID:946447" CDS complement(3181619..3182407) /gene="ygiD" /locus_tag="b3039" /gene_synonym="ECK3030; JW3007" /codon_start=1 /transl_table=11 /product="4,5- DOPA-extradiol-dioxygenase" /protein_id="NP_417511.2" /db_xref="GI:226524747" /db_xref="ASAP:ABE-0009973" /db_xref="UniProtKB/Swiss-Prot:P24197" /db_xref="EcoGene:EG11166" /db_xref="GeneID:946447" /translation="MSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMTLPRPQAIVV VSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVT LDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLAALRDEGIML VASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVNYLDHEGGTL SNPTPEHYLPLLYVLGAWDGQEPITIPVEGIEMGSLSMLSVQIG" gene 3182550..3183323 /gene="zupT" /locus_tag="b3040" /gene_synonym="ECK3031; JW3008; ygiE" /db_xref="EcoGene:EG11167" /db_xref="GeneID:947035" CDS 3182550..3183323 /gene="zupT" /locus_tag="b3040" /gene_synonym="ECK3031; JW3008; ygiE" /codon_start=1 /transl_table=11 /product="zinc transporter" /protein_id="NP_417512.1" /db_xref="GI:16130936" /db_xref="ASAP:ABE-0009977" /db_xref="UniProtKB/Swiss-Prot:P0A8H3" /db_xref="EcoGene:EG11167" /db_xref="GeneID:947035" /translation="MSVPLILTILAGAATFIGAFLGVLGQKPSNRLLAFSLGFAAGIM LLISLMEMLPAALAAEGMSPVLGYGMFIFGLLGYFGLDRMLPHAHPQDLMQKSVQPLP KSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPV YAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVD ELMPLAKEIDPNNNPSYGVLCGMSVMGFSLVLLQTAGIG" gene complement(3183813..3184466) /gene="ribB" /locus_tag="b3041" /gene_synonym="ECK3032; htrP; JW3009; luxH" /db_xref="EcoGene:EG10465" /db_xref="GeneID:947526" CDS complement(3183813..3184466) /gene="ribB" /locus_tag="b3041" /gene_synonym="ECK3032; htrP; JW3009; luxH" /EC_number="4.1.99.12" /function="enzyme; Biosynthesis of cofactors, carriers: Riboflavin" /experiment="N-terminus verified by Edman degradation: PMID 1597419" /note="3,4 dihydroxy-2-butanone-4-phosphate synthase" /codon_start=1 /transl_table=11 /product="3,4-dihydroxy-2-butanone-4-phosphate synthase" /protein_id="NP_417513.1" /db_xref="GI:16130937" /db_xref="ASAP:ABE-0009980" /db_xref="UniProtKB/Swiss-Prot:P0A7J0" /db_xref="EcoGene:EG10465" /db_xref="GeneID:947526" /translation="MNQTLLSSFGTPFERVENALAALREGRGVMVLDDEDRENEGDMI FPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTGFTVTIEAA EGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDL MTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHERKAS" gene 3184840..3185130 /gene="yqiC" /locus_tag="b3042" /gene_synonym="ECK3033; JW5505" /db_xref="EcoGene:EG13031" /db_xref="GeneID:947524" CDS 3184840..3185130 /gene="yqiC" /locus_tag="b3042" /gene_synonym="ECK3033; JW5505" /experiment="N-terminus verified by Edman degradation: PMID 9868784" /codon_start=1 /transl_table=11 /product="BMFP family putative fusogenic protein" /protein_id="NP_417514.4" /db_xref="GI:90111530" /db_xref="ASAP:ABE-0009987" /db_xref="UniProtKB/Swiss-Prot:Q46868" /db_xref="EcoGene:EG13031" /db_xref="GeneID:947524" /translation="MIDPKKIEQIARQVHESMPKGIREFGEDVEKKIRQTLQAQLTRL DLVSREEFDVQTQVLLRTREKLALLEQRISELENRSTEIKKQPDPETLPPTL" gene 3185414..3185965 /gene="ygiL" /locus_tag="b3043" /gene_synonym="ECK3034; JW3011" /db_xref="EcoGene:EG12363" /db_xref="GeneID:947522" CDS 3185414..3185965 /gene="ygiL" /locus_tag="b3043" /gene_synonym="ECK3034; JW3011" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="putative fimbrial-like protein" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_417515.1" /db_xref="GI:16130939" /db_xref="ASAP:ABE-0009992" /db_xref="UniProtKB/Swiss-Prot:P39834" /db_xref="EcoGene:EG12363" /db_xref="GeneID:947522" /translation="MSAFKKSLLVAGVAMILSNNVFADEGHGIVKFKGEVISAPCSIK PGDEDLTVNLGEVADTVLKSDQKSLAEPFTIHLQDCMLSQGGTTYSKAKVTFTTANTM TGQSDLLKNTKETEIGGATGVGVRILDSQSGEVTLGTPVVITFNNTNSYQELNFKARM ESPSKDATPGNVYAQADYKIAYE" gene join(3186061..3186090,3187427..3189865) /gene="yqiG" /locus_tag="b3046" /gene_synonym="ECK3035; JW5507" /pseudo /db_xref="EcoGene:EG14228" /db_xref="GeneID:947529" CDS join(3186061..3186090,3187427..3189865) /gene="yqiG" /locus_tag="b3046" /gene_synonym="ECK3035; JW5507" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0010001" /db_xref="UniProtKB/Swiss-Prot:P76655" /db_xref="EcoGene:EG14228" /db_xref="GeneID:947529" mobile_element 3186096..3187426 /mobile_element_type="insertion sequence:IS2I" gene 3186187..3186552 /gene="insC1" /locus_tag="b3044" /gene_synonym="ECK0357" /db_xref="EcoGene:EG40003" /db_xref="GeneID:947520" CDS 3186187..3186552 /gene="insC1" /locus_tag="b3044" /gene_synonym="ECK0357" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_417516.3" /db_xref="GI:145698309" /db_xref="ASAP:ABE-0009997" /db_xref="UniProtKB/Swiss-Prot:P0CF44" /db_xref="EcoGene:EG40003" /db_xref="GeneID:947520" /translation="MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAAS QLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVE YGRAKKWIAHAPLLPGDGE" gene 3186510..3187415 /gene="insD1" /locus_tag="b3045" /gene_synonym="ECK0358" /db_xref="EcoGene:EG40004" /db_xref="GeneID:947517" CDS 3186510..3187415 /gene="insD1" /locus_tag="b3045" /gene_synonym="ECK0358" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_417517.1" /db_xref="GI:16130941" /db_xref="ASAP:ABE-0009999" /db_xref="UniProtKB/Swiss-Prot:P0CF57" /db_xref="EcoGene:EG40004" /db_xref="GeneID:947517" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" gene 3189881..3190630 /gene="yqiH" /locus_tag="b3047" /gene_synonym="ECK3036; JW5508" /db_xref="EcoGene:EG14229" /db_xref="GeneID:947531" CDS 3189881..3190630 /gene="yqiH" /locus_tag="b3047" /gene_synonym="ECK3036; JW5508" /function="putative factor; Surface structures" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006457 - protein folding" /note="putative membrane protein" /codon_start=1 /transl_table=11 /product="putative periplasmic pilin chaperone" /protein_id="NP_417519.4" /db_xref="GI:90111532" /db_xref="ASAP:ABE-0010003" /db_xref="UniProtKB/Swiss-Prot:P77616" /db_xref="EcoGene:EG14229" /db_xref="GeneID:947531" /translation="MRYLNTKNIIAAGVLLSCMSSIAWGAIIPDRTRIIMNESDKGEA LKLTNQSKNLPYLAQTWIEDTKGNKSRDFIVTVPPMVRLNPSEQIQIRMITQEKIAQL PKDRETLFYFNVREIPPKTDKKNVMQVTMQHALKLFWRPKAIELEDDGVMTYEKVEII RRNDGSIRFNNKMPYHVTLGYIGTNGVTMLPQTQSLMVTPFSYANTQFKNVPSTFQVG YINDFGGLSFYEINCPVVNNICNISVANRDQ" gene 3190632..3191696 /gene="yqiI" /locus_tag="b3048" /gene_synonym="ECK3037; JW5509" /db_xref="EcoGene:EG14230" /db_xref="GeneID:947535" CDS 3190632..3191696 /gene="yqiI" /locus_tag="b3048" /gene_synonym="ECK3037; JW5509" /function="structural component; Surface structures" /codon_start=1 /transl_table=11 /product="fimbrial protein" /protein_id="NP_417520.1" /db_xref="GI:16130944" /db_xref="ASAP:ABE-0010005" /db_xref="UniProtKB/Swiss-Prot:P76656" /db_xref="EcoGene:EG14230" /db_xref="GeneID:947535" /translation="MRYLLIVITFFMGFSSLPAWAMDCYAEHEGGNTVVIGYVPRISI PSDGKKGDKIWQSSEYFMNVFCNNALPGPSPGEEYPSAWANIMMLLASGQDFYNQNSY TFGVTYNGVDYDSTSPLPIAAPVCIDIKGAGTFGNGYKKPAVCSGGPEPQLSVTFPVR VQLYIKLAKNANKVNKKLVLPDEYIALEFKGMSGAGAIEVDKNLTFRIRGLNNIHVLD CFVNVDLEPADGVVDFGKINSRTIKNTSVSETFSVVMTKDPGAACTEQFNILGSFFTT DILSDYSHLDIGNGLLLKIFHNDGTATEFNRFSQFASFSSSSAPSVTAPFRAELSANP AETVVEGPFSKDVILKITYN" gene complement(3191739..3191939) /gene="glgS" /locus_tag="b3049" /gene_synonym="ECK3038; JW3021; scoR" /db_xref="EcoGene:EG11381" /db_xref="GeneID:947533" CDS complement(3191739..3191939) /gene="glgS" /locus_tag="b3049" /gene_synonym="ECK3038; JW3021; scoR" /function="putative enzyme; Macromolecule synthesis, modification: Polysaccharides - (cytoplasmic)" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0000271 - polysaccharide biosynthetic process" /note="glycogen biosynthesis, rpoS dependent" /codon_start=1 /transl_table=11 /product="motility and biofilm regulator" /protein_id="NP_417521.1" /db_xref="GI:16130945" /db_xref="ASAP:ABE-0010007" /db_xref="UniProtKB/Swiss-Prot:P26649" /db_xref="EcoGene:EG11381" /db_xref="GeneID:947533" /translation="MDHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTW FCARYAWYCQQMMQARELELEH" gene 3192208..3192837 /gene="yqiJ" /locus_tag="b3050" /gene_synonym="ECK3039; JW3022" /db_xref="EcoGene:EG14231" /db_xref="GeneID:947530" CDS 3192208..3192837 /gene="yqiJ" /locus_tag="b3050" /gene_synonym="ECK3039; JW3022" /function="putative enzyme; Not classified" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="DUF1449 family inner membrane protein" /protein_id="NP_417522.1" /db_xref="GI:16130946" /db_xref="ASAP:ABE-0010011" /db_xref="UniProtKB/Swiss-Prot:P76657" /db_xref="EcoGene:EG14231" /db_xref="GeneID:947530" /translation="MILFADYNTPYLFAISFVLLIGLLEIFALICGHMLSGALDAHLD HYDSITTGHISQALHYLNIGRLPALVVLCLLAGFFGLIGILLQHACIMVWQSPLSNLF VVPVSLLFTIIAVHYTGKIVAPWIPRDHSSAITEEEYIGSMALITGHQATSGNPCEGK LTDQFGQIHYLLLEPEEGKIFTKGDKVLIICRLSATRYLAENNPWPQIL" gene 3192864..3194525 /gene="yqiK" /locus_tag="b3051" /gene_synonym="ECK3040; JW3023" /db_xref="EcoGene:EG14232" /db_xref="GeneID:947537" CDS 3192864..3194525 /gene="yqiK" /locus_tag="b3051" /gene_synonym="ECK3040; JW3023" /function="putative membrane; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative membrane protein" /codon_start=1 /transl_table=11 /product="PHB family membrane protein, function unknown" /protein_id="NP_417523.1" /db_xref="GI:16130947" /db_xref="ASAP:ABE-0010013" /db_xref="UniProtKB/Swiss-Prot:P77306" /db_xref="EcoGene:EG14232" /db_xref="GeneID:947537" /translation="MDDIVNSVPSWMFTAIIAVCILFIIGIIFARLYRRASAEQAFVR TGLGGQKVVMSGGAIVMPIFHEIIPINMNTLKLEVSRSTIDSLITKDRMRVDVVVAFF VRVKPSVEGIATAAQTLGQRTLSPEDLRMLVEDKFVDALRATAAQMTMHELQDTRENF VQGVQNTVAEDLSKNGLELESVSLTNFNQTSKEHFNPNNAFDAEGLTKLTQETERRRR ERNEVEQDVEVAVREKNRDALSRKLEIEQQEAFMTLEQEQQVKTRTAEQNARIAAFEA ERRREAEQTRILAERQIQETEIDREQAVRSRKVEAEREVRIKEIEQQQVTEIANQTKS IAIAAKSEQQSQAEARANLALAEAVSAQQNVETTRQTAEADRAKQVALIAAAQDAETK AVELTVRAKAEKEAAEMQAAAIVELAEATRKKGLAEAEAQRALNDAINVLSDEQTSLK FKLALLQALPAVIEKSVEPMKSIDGIKIIQVDGLNRGGAAGDANTGNVGGGNLAEQAL SAALSYRTQAPLIDSLLNEIGVSGGSLAALTSPLTSTTPVEEKAE" gene complement(3194723..3194865) /gene="sibD" /locus_tag="b4447" /gene_synonym="C0730; ECK3041; IS156; JWR0251; QUAD1d; rygD; tp8" /db_xref="EcoGene:EG31160" /db_xref="GeneID:2847684" ncRNA complement(3194723..3194865) /ncRNA_class="antisense_RNA" /gene="sibD" /locus_tag="b4447" /gene_synonym="C0730; ECK3041; IS156; JWR0251; QUAD1d; rygD; tp8" /product="sRNA antisense regulator of toxic IbsD protein" /note="identified in a large scale screen" /db_xref="ASAP:ABE-0047267" /db_xref="EcoGene:EG31160" /db_xref="GeneID:2847684" gene 3194766..3194825 /gene="ibsD" /locus_tag="b4664" /gene_synonym="ECK4479" /db_xref="EcoGene:EG14469" /db_xref="GeneID:7751628" CDS 3194766..3194825 /gene="ibsD" /locus_tag="b4664" /gene_synonym="ECK4479" /codon_start=1 /transl_table=11 /product="toxic membrane protein" /protein_id="YP_002791256.1" /db_xref="GI:226524748" /db_xref="UniProtKB/Swiss-Prot:C1P616" /db_xref="EcoGene:EG14469" /db_xref="GeneID:7751628" /translation="MMKLVIILIVLLLVSFAAY" gene complement(3195099..3195240) /gene="sibE" /locus_tag="b4611" /gene_synonym="ECK4420; QUAD1e; rygE" /db_xref="EcoGene:EG31169" /db_xref="GeneID:5061520" ncRNA complement(3195099..3195240) /ncRNA_class="antisense_RNA" /gene="sibE" /locus_tag="b4611" /gene_synonym="ECK4420; QUAD1e; rygE" /product="sRNA antisense regulator of toxic IbsE protein" /db_xref="EcoGene:EG31169" /db_xref="GeneID:5061520" gene 3195141..3195200 /gene="ibsE" /locus_tag="b4666" /gene_synonym="ECK4481" /db_xref="EcoGene:EG14471" /db_xref="GeneID:7751629" CDS 3195141..3195200 /gene="ibsE" /locus_tag="b4666" /gene_synonym="ECK4481" /codon_start=1 /transl_table=11 /product="toxic membrane protein" /protein_id="YP_002791257.1" /db_xref="GI:226524749" /db_xref="UniProtKB/Swiss-Prot:C1P617" /db_xref="EcoGene:EG14471" /db_xref="GeneID:7751629" /translation="MMKLVIILVVLLLLSFPTY" gene complement(3195320..3196753) /gene="hldE" /locus_tag="b3052" /gene_synonym="ECK3042; gmhC; JW3024; rfaE; waaE; yqiF" /db_xref="EcoGene:EG13416" /db_xref="GeneID:947548" CDS complement(3195320..3196753) /gene="hldE" /locus_tag="b3052" /gene_synonym="ECK3042; gmhC; JW3024; rfaE; waaE; yqiF" /EC_number="2.7.1.-" /EC_number="2.7.7.-" /function="putative enzyme; Not classified" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0009244 - lipopolysaccharide core region biosynthetic process" /codon_start=1 /transl_table=11 /product="heptose 7-phosphate kinase and heptose 1-phosphate adenyltransferase" /protein_id="NP_417524.1" /db_xref="GI:16130948" /db_xref="ASAP:ABE-0010015" /db_xref="UniProtKB/Swiss-Prot:P76658" /db_xref="EcoGene:EG13416" /db_xref="GeneID:947548" /translation="MKVTLPEFERAGVMVVGDVMLDRYWYGPTSRISPEAPVPVVKVN TIEERPGGAANVAMNIASLGANARLVGLTGIDDAARALSKSLADVNVKCDFVSVPTHP TITKLRVLSRNQQLIRLDFEEGFEGVDPQPLHERINQALSSIGALVLSDYAKGALASV QQMIQLARKAGVPVLIDPKGTDFERYRGATLLTPNLSEFEAVVGKCKTEEEIVERGMK LIADYELSALLVTRSEQGMSLLQPGKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAA GNSLEEACFFANAAAGVVVGKLGTSTVSPIELENAVRGRADTGFGVMTEEELKLAVAA ARKRGEKVVMTNGVFDILHAGHVSYLANARKLGDRLIVAVNSDASTKRLKGDSRPVNP LEQRMIVLGALEAVDWVVSFEEDTPQRLIAGILPDLLVKGGDYKPEEIAGSKEVWANG GEVLVLNFEDGCSTTNIIKKIQQDKKG" gene complement(3196801..3199641) /gene="glnE" /locus_tag="b3053" /gene_synonym="ECK3043; JW3025" /db_xref="EcoGene:EG11602" /db_xref="GeneID:947552" CDS complement(3196801..3199641) /gene="glnE" /locus_tag="b3053" /gene_synonym="ECK3043; JW3025" /EC_number="2.7.7.42" /function="enzyme; Proteins - translation and modification" /GO_process="GO:0006807 - nitrogen compound metabolic process; GO:0006464 - protein modification process" /note="adenylylating enzyme for glutamine synthetase" /codon_start=1 /transl_table=11 /product="fused deadenylyltransferase/adenylyltransferase for glutamine synthetase" /protein_id="NP_417525.1" /db_xref="GI:16130949" /db_xref="ASAP:ABE-0010018" /db_xref="UniProtKB/Swiss-Prot:P30870" /db_xref="EcoGene:EG11602" /db_xref="GeneID:947552" /translation="MKPLSSPLQQYWQTVVERLPEPLAEESLSAQAKSVLTFSDFVQD SVIAHPEWLTELESQPPQADEWQHYAAWLQEALCNVSDEAGLMRELRLFRRRIMVRIA WAQTLALVTEESILQQLSYLAETLIVAARDWLYDACCREWGTPCNAQGEAQPLLILGM GKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIKVLDQPTQDGF VYRVDMRLRPFGESGPLVLSFAALEDYYQEQGRDWERYAMVKARIMGDSEGVYANELR AMLRPFVFRRYIDFSVIQSLRNMKGMIAREVRRRGLTDNIKLGAGGIREIEFIVQVFQ LIRGGREPSLQSRSLLPTLSAIAELHLLSENDAEQLRVAYLFLRRLENLLQSINDEQT QTLPSDELNRARLAWAMDFADWPQLTGALTAHMTNVRRVFNELIGDDESETQEESLSE QWRELWQDALQEDDTTPVLAHLSEDDRKQVLTLIADFRKELDKRTIGPRGRQVLDHLM PHLLSDVCAREDAAVTLSRITALLVGIVTRTTYLELLSEFPAALKHLISLCAASPMIA SQLARYPLLLDELLDPNTLYQPTATDAYRDELRQYLLRVPEDDEEQQLEALRQFKQAQ LLRIAAADIAGTLPVMKVSDHLTWLAEAMIDAVVQQAWVQMVARYGKPNHLNEREGRG FAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMHLFS TRTSSGILYEVDARLRPSGAAGMLVTSAEAFADYQKNEAWTWEHQALVRARVVYGDPQ LTAHFDAVRREIMTLPREGKTLQTEVREMREKMRAHLGNKHRDRFDIKADEGGITDIE FITQYLVLRYAHEKPKLTRWSDNVRILELLAQNDIMEEQEAMALTRAYTTLRDELHHL ALQELPGHVSEDCFTAERELVRASWQKWLVEE" gene complement(3199664..3200965) /gene="ygiF" /locus_tag="b3054" /gene_synonym="ECK3044; JW3026" /db_xref="EcoGene:EG11603" /db_xref="GeneID:947554" CDS complement(3199664..3200965) /gene="ygiF" /locus_tag="b3054" /gene_synonym="ECK3044; JW3026" /codon_start=1 /transl_table=11 /product="inorganic triphosphatase" /protein_id="NP_417526.1" /db_xref="GI:16130950" /db_xref="ASAP:ABE-0010020" /db_xref="UniProtKB/Swiss-Prot:P30871" /db_xref="EcoGene:EG11603" /db_xref="GeneID:947554" /translation="MAQEIELKFIVNHSAVEALRDHLNTLGGEHHDPVQLLNIYYETP DNWLRGHDMGLRIRGENGRYEMTMKVAGRVTGGLHQRPEYNVALSEPTLDLAQLPTEV WPNGELPADLASRVQPLFSTDFYREKWLVAVDGSQIEIALDQGEVKAGEFAEPICELE LELLSGDTRAVLKLANQLVSQTGLRQGSLSKAARGYHLAQGNPAREIKPTTILHVAAK ADVEQGLEAALELALAQWQYHEELWVRGNDAAKEQVLAAISLVRHTLMLFGGIVPRKA STHLRDLLTQCEATIASAVSAVTAVYSTETAMAKLALTEWLVSKAWQPFLDAKAQGKI SDSFKRFADIHLSRHAAELKSVFCQPLGDRYRDQLPRLTRDIDSILLLAGYYDPVVAQ AWLENWQGLHHAIATGQRIEIEHFRNEANNQEPFWLHSGKR" gene 3201207..3201827 /gene="ygiM" /locus_tag="b3055" /gene_synonym="ecfG; ECK3045; htrG; JW3027" /db_xref="EcoGene:EG12434" /db_xref="GeneID:947555" CDS 3201207..3201827 /gene="ygiM" /locus_tag="b3055" /gene_synonym="ecfG; ECK3045; htrG; JW3027" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="SH3 domain protein" /protein_id="NP_417527.1" /db_xref="GI:16130951" /db_xref="ASAP:ABE-0010028" /db_xref="UniProtKB/Swiss-Prot:P0ADT8" /db_xref="EcoGene:EG12434" /db_xref="GeneID:947555" /translation="MPKLRLIGLTLLALSATAVSHAEETRYVSDELNTWVRSGPGDHY RLVGTVNAGEEVTLLQTDANTNYAQVKDSSGRTAWIPLKQLSTEPSLRSRVPDLENQV KTLTDKLTNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNELIVAQKKVDAASV QLDDKQRTIIMQWFMYGGGVLGLGLLLGLVLPHLIPSRKRKDRWMN" gene 3201891..3203129 /gene="cca" /locus_tag="b3056" /gene_synonym="ECK3046; JW3028" /db_xref="EcoGene:EG10136" /db_xref="GeneID:947553" CDS 3201891..3203129 /gene="cca" /locus_tag="b3056" /gene_synonym="ECK3046; JW3028" /EC_number="2.7.7.72" /EC_number="3.1.4.16" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /note="tRNA nucleotidyl transferase" /codon_start=1 /transl_table=11 /product="fused tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase and phosphatase" /protein_id="NP_417528.1" /db_xref="GI:16130952" /db_xref="ASAP:ABE-0010031" /db_xref="UniProtKB/Swiss-Prot:P06961" /db_xref="EcoGene:EG10136" /db_xref="GeneID:947553" /translation="MKIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGR DFPVFLHPQTHEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDD NGEIIDPYNGLGDLQNRLLRHVSPAFGEDPLRVLRVARFAARYAHLGFRIADETLALM REMTHAGELEHLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPA PAKWHPEIDTGIHTLMTLSMAAMLSPQVDVRFATLCHDLGKGLTPPELWPRHHGHGPA GVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQR VEQLALTSEADVRGRTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFKGVEIREEL TRRRIAAVASWKEQRCPKPE" repeat_region 3203144..3203268 /note="REP225 (repetitive extragenic palindromic) element; contains 3 REP sequences" gene complement(3203310..3204131) /gene="bacA" /locus_tag="b3057" /gene_synonym="ECK3047; JW3029; uppP" /db_xref="EcoGene:EG11665" /db_xref="GeneID:947551" CDS complement(3203310..3204131) /gene="bacA" /locus_tag="b3057" /gene_synonym="ECK3047; JW3029; uppP" /EC_number="3.6.1.27" /function="putative transport; Drug/analog sensitivity" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042493 - response to drug" /note="bacitracin resistance; possibly phosphorylates undecaprenol" /codon_start=1 /transl_table=11 /product="undecaprenyl pyrophosphate phosphatase" /protein_id="NP_417529.1" /db_xref="GI:16130953" /db_xref="ASAP:ABE-0010034" /db_xref="UniProtKB/Swiss-Prot:P60932" /db_xref="EcoGene:EG11665" /db_xref="GeneID:947551" /translation="MSDMHSLLIAAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGDT AKTFEVVIQLGSILAVVVMFWRRLFGLIGIHFGRPLQHEGESKGRLTLIHILLGMIPA VVLGLLFHDTIKSLFNPINVMYALVVGGLLLIAAECLKPKEPRAPGLDDMTYRQAFMI GCFQCLALWPGFSRSGATISGGMLMGVSRYAASEFSFLLAVPMMMGATALDLYKSWGF LTSGDIPMFAVGFITAFVVALIAIKTFLQLIKRISFIPFAIYRFIVAAAVYVVFF" gene complement(3204221..3204589) /gene="folB" /locus_tag="b3058" /gene_synonym="ECK3048; JW3030; ygiG" /db_xref="EcoGene:EG11673" /db_xref="GeneID:947544" CDS complement(3204221..3204589) /gene="folB" /locus_tag="b3058" /gene_synonym="ECK3048; JW3030; ygiG" /EC_number="4.1.2.25" /function="putative enzyme; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 8809757" /GO_process="GO:0046656 - folic acid biosynthetic process" /note="putative kinase" /codon_start=1 /transl_table=11 /product="dihydroneopterin aldolase and dihydroneopterin triphosphate 2'-epimerase" /protein_id="NP_417530.2" /db_xref="GI:90111533" /db_xref="ASAP:ABE-0010036" /db_xref="UniProtKB/Swiss-Prot:P0AC16" /db_xref="EcoGene:EG11673" /db_xref="GeneID:947544" /translation="MDIVFIEQLSVITTIGVYDWEQTIEQKLVFDIEMAWDNRKAAKS DDVADCLSYADIAETVVSHVEGARFALVERVAEEVAELLLARFNSPWVRIKLSKPGAV ARAANVGVIIERGNNLKENN" gene 3204694..3205311 /gene="plsY" /locus_tag="b3059" /gene_synonym="ECK3049; JW3031; ygiH" /db_xref="EcoGene:EG11674" /db_xref="GeneID:947561" CDS 3204694..3205311 /gene="plsY" /locus_tag="b3059" /gene_synonym="ECK3049; JW3031; ygiH" /codon_start=1 /transl_table=11 /product="putative glycerol-3-phosphate acyltransferase" /protein_id="NP_417531.1" /db_xref="GI:16130955" /db_xref="ASAP:ABE-0010042" /db_xref="UniProtKB/Swiss-Prot:P60782" /db_xref="EcoGene:EG11674" /db_xref="GeneID:947561" /translation="MSAIAPGMILIAYLCGSISSAILVCRLCGLPDPRTSGSGNPGAT NVLRIGGKGAAVAVLIFDVLKGMLPVWGAYELGVSPFWLGLIAIAACLGHIWPVFFGF KGGKGVATAFGAIAPIGWDLTGVMAGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKP QFTFPVSMLSCLILLRHHDNIQRLWRRQETKIWTKFKRKREKDPE" gene complement(3205324..3206256) /gene="ttdR" /locus_tag="b3060" /gene_synonym="dan; ECK3050; JW3032; ygiP" /db_xref="EcoGene:EG12694" /db_xref="GeneID:947562" CDS complement(3205324..3206256) /gene="ttdR" /locus_tag="b3060" /gene_synonym="dan; ECK3050; JW3032; ygiP" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="transcriptional activator of ttdABT" /protein_id="NP_417532.1" /db_xref="GI:16130956" /db_xref="ASAP:ABE-0010045" /db_xref="UniProtKB/Swiss-Prot:P45463" /db_xref="EcoGene:EG12694" /db_xref="GeneID:947562" /translation="MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQIL ENTLATTLLNRSARGVALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGC SFGFGRSHIAPAITELMRNYPELQVHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAH LLTKNKRILCAAPEYLQKYPQPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVK VSGHLSSNSGEIVLQWALEGKGIMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYR EPLYRSMKLRVCVEFLAAWCQQRLGKPDEGYQVM" gene 3206463..3207374 /gene="ttdA" /locus_tag="b3061" /gene_synonym="ECK3051; JW3033; ygjA" /db_xref="EcoGene:EG11168" /db_xref="GeneID:947565" CDS 3206463..3207374 /gene="ttdA" /locus_tag="b3061" /gene_synonym="ECK3051; JW3033; ygjA" /EC_number="4.2.1.32" /function="enzyme; Energy metabolism, carbon: Fermentation" /GO_process="GO:0006113 - fermentation" /note="L-tartrate dehydratase, subunit A" /codon_start=1 /transl_table=11 /product="L-tartrate dehydratase, alpha subunit" /protein_id="NP_417533.1" /db_xref="GI:16130957" /db_xref="ASAP:ABE-0010050" /db_xref="UniProtKB/Swiss-Prot:P05847" /db_xref="EcoGene:EG11168" /db_xref="GeneID:947565" /translation="MMSESNKQQAVNKLTEIVANFTAMISTRMPDDVVDKLKQLKDAE TSSMGKIIYHTMFDNMQKAIDLNRPACQDTGEIMFFVKVGSRFPLLGELQSILKQAVE EATVKAPLRHNAVEIFDEVNTGKNTGSGVPWVTWDIIPDNDDAEIEVYMAGGGCTLPG RSKVLMPSEGYEGVVKFVFENISTLAVNACPPVLVGVGIATSVETAAVLSRKAILRPI GSRHPNPKAAELELRLEEGLNRLGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTG CWAHRRGTLLVHADLTFENLSHTRSAL" gene 3207371..3207976 /gene="ttdB" /locus_tag="b3062" /gene_synonym="ECK3052; JW3034; ygjB" /db_xref="EcoGene:EG11169" /db_xref="GeneID:947568" CDS 3207371..3207976 /gene="ttdB" /locus_tag="b3062" /gene_synonym="ECK3052; JW3034; ygjB" /EC_number="4.2.1.32" /function="enzyme; Energy metabolism, carbon: Fermentation" /GO_process="GO:0006113 - fermentation" /note="L-tartrate dehydratase, subunit B" /codon_start=1 /transl_table=11 /product="L-tartrate dehydratase, beta subunit" /protein_id="NP_417534.1" /db_xref="GI:16130958" /db_xref="ASAP:ABE-0010052" /db_xref="UniProtKB/Swiss-Prot:P0AC35" /db_xref="EcoGene:EG11169" /db_xref="GeneID:947568" /translation="MKKILTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRLIELK RPIPYDLNGKAIFHAGPIVRKNGDKWEMVSVGPTTSMRMESFEREFIEQTGVKLVVGK GGMGPLTEEGCQKFKALHVIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVCRVKEF GPLIVSIDTHGNNLIAENKKLFAERRDPIVEEICEHVHYIK" gene 3208024..3209487 /gene="ttdT" /locus_tag="b3063" /gene_synonym="ECK3053; JW3035; ygjC; ygjE" /db_xref="EcoGene:EG12393" /db_xref="GeneID:947576" CDS 3208024..3209487 /gene="ttdT" /locus_tag="b3063" /gene_synonym="ECK3053; JW3035; ygjC; ygjE" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="L-tartrate/succinate antiporte" /protein_id="NP_417535.1" /db_xref="GI:16130959" /db_xref="ASAP:ABE-0010056" /db_xref="UniProtKB/Swiss-Prot:P39414" /db_xref="EcoGene:EG12393" /db_xref="GeneID:947576" /translation="MKPSTEWWRYLAPLAVIAIIALLPVPAGLENHTWLYFAVFTGVI VGLILEPVPGAVVAMVGISIIAILSPWLLFSPEQLAQPGFKFTAKSLSWAVSGFSNSV IWLIFAAFMFGTGYEKTGLGRRIALILVKKMGHRTLFLGYAVMFSELILAPVTPSNSA RGAGIIYPIIRNLPPLYQSQPNDSSSRSIGSYIMWMGIVADCVTSAIFLTAMAPNLLL IGLMKSASHATLSWGDWFLGMLPLSILLVLLVPWLAYVLYPPVLKSGDQVPRWAETEL QAMGPLCSREKRMLGLMVGALVLWIFGGDYIDAAMVGYSVVALMLLLRIISWDDIVSN KAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLSGYSPTMVMVALIVVFYLLRY FFASATAYTSALAPMMIAAALAMPEIPLPVFCLMVGAAIGLGSILTPYATGPSPIYYG SGYLPTADYWRLGAIFGLIFLVLLVITGLLWMPVVLL" repeat_region 3209499..3209518 /note="REP226 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(3209530..3210543) /gene="tsaD" /locus_tag="b3064" /gene_synonym="ECK3054; gcp; JW3036; ygjD" /db_xref="EcoGene:EG11171" /db_xref="GeneID:947578" CDS complement(3209530..3210543) /gene="tsaD" /locus_tag="b3064" /gene_synonym="ECK3054; gcp; JW3036; ygjD" /function="enzyme; tRNA modification" /note="putative O-sialoglycoprotein endopeptidase" /codon_start=1 /transl_table=11 /product="tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; glycation binding protein" /protein_id="NP_417536.1" /db_xref="GI:16130960" /db_xref="ASAP:ABE-0010058" /db_xref="UniProtKB/Swiss-Prot:P05852" /db_xref="EcoGene:EG11171" /db_xref="GeneID:947578" /translation="MRVLGIETSCDETGIAIYDDEKGLLANQLYSQVKLHADYGGVVP ELASRDHVRKTVPLIQAALKESGLTAKDIDAVAYTAGPGLVGALLVGATVGRSLAFAW DVPAIPVHHMEGHLLAPMLEDNPPEFPFVALLVSGGHTQLISVTGIGQYELLGESIDD AAGEAFDKTAKLLGLDYPGGPLLSKMAAQGTAGRFVFPRPMTDRPGLDFSFSGLKTFA ANTIRDNGTDDQTRADIARAFEDAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLR AKLAEMMKKRRGEVFYARPEFCTDNGAMIAYAGMVRFKAGATADLGVSVRPRWPLAEL PAA" gene 3210781..3210996 /gene="rpsU" /locus_tag="b3065" /gene_synonym="ECK3055; JW3037" /db_xref="EcoGene:EG10920" /db_xref="GeneID:947577" CDS 3210781..3210996 /gene="rpsU" /locus_tag="b3065" /gene_synonym="ECK3055; JW3037" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S21" /protein_id="NP_417537.1" /db_xref="GI:16130961" /db_xref="ASAP:ABE-0010063" /db_xref="UniProtKB/Swiss-Prot:P68679" /db_xref="EcoGene:EG10920" /db_xref="GeneID:947577" /translation="MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTE RKRAKASAVKRHAKKLARENARRTRLY" gene 3211107..3212852 /gene="dnaG" /locus_tag="b3066" /gene_synonym="dnaP; ECK3056; JW3038; parB; sdgA" /db_xref="EcoGene:EG10239" /db_xref="GeneID:947570" CDS 3211107..3212852 /gene="dnaG" /locus_tag="b3066" /gene_synonym="dnaP; ECK3056; JW3038; parB; sdgA" /EC_number="2.7.7.-" /function="enzyme; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication" /note="DNA biosynthesis; DNA primase" /codon_start=1 /transl_table=11 /product="DNA primase" /protein_id="NP_417538.1" /db_xref="GI:16130962" /db_xref="ASAP:ABE-0010065" /db_xref="UniProtKB/Swiss-Prot:P0ABS5" /db_xref="EcoGene:EG10239" /db_xref="GeneID:947570" /translation="MAGRIPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHN EKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAG SGPSQIERHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGF APPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGF GGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQY GINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQ LRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLS TLALPLISQVPGETLRIYLRQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTT MRILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYR GTNNAATLEKLSMWDDIADKNIAEQTFTDSLNHMFDSLLELRQEELIARERTHGLSNE ERLELWTLNQELAKK" gene 3213047..3214888 /gene="rpoD" /locus_tag="b3067" /gene_synonym="alt; ECK3057; JW3039" /db_xref="EcoGene:EG10896" /db_xref="GeneID:947567" CDS 3213047..3214888 /gene="rpoD" /locus_tag="b3067" /gene_synonym="alt; ECK3057; JW3039" /function="factor; Global regulatory functions" /experiment="N-terminus verified by Edman degradation: PMID 1095419" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006350 - transcription" /note="RNA polymerase, sigma(70) factor; regulation of proteins induced at high temperatures" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma 70 (sigma D) factor" /protein_id="NP_417539.1" /db_xref="GI:16130963" /db_xref="ASAP:ABE-0010070" /db_xref="UniProtKB/Swiss-Prot:P00579" /db_xref="EcoGene:EG10896" /db_xref="GeneID:947567" /translation="MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDI IQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYM REMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSD LITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAR EKFAELRAQYVVTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVM MDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVS EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAK KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID MNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD" repeat_region 3214892..3214924 /note="REP227 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(3214967..3215473) /gene="mug" /locus_tag="b3068" /gene_synonym="dug; ECK3058; JW3040; ygjF" /db_xref="EcoGene:EG12717" /db_xref="GeneID:947560" CDS complement(3214967..3215473) /gene="mug" /locus_tag="b3068" /gene_synonym="dug; ECK3058; JW3040; ygjF" /EC_number="3.2.2.-" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006281 - DNA repair" /codon_start=1 /transl_table=11 /product="G/U mismatch-specific DNA glycosylase; xanthine DNA glycosylase" /protein_id="NP_417540.1" /db_xref="GI:16130964" /db_xref="ASAP:ABE-0010073" /db_xref="UniProtKB/Swiss-Prot:P0A9H1" /db_xref="EcoGene:EG12717" /db_xref="GeneID:947560" /translation="MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQA GFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEVSKQELHAGGRKLIEKIEDYQPQ ALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELD QALVVRGR" gene 3215598..3215673 /gene="ileX" /locus_tag="b3069" /gene_synonym="ECK3059; JWR0069" /db_xref="EcoGene:EG30046" /db_xref="GeneID:947558" tRNA 3215598..3215673 /gene="ileX" /locus_tag="b3069" /gene_synonym="ECK3059; JWR0069" /product="tRNA-Ile" /note="anticodon: CAU" /db_xref="ASAP:ABE-0010076" /db_xref="EcoGene:EG30046" /db_xref="GeneID:947558" gene complement(3215727..3216491) /gene="yqjH" /locus_tag="b3070" /gene_synonym="ECK3060; JW3041" /db_xref="EcoGene:EG12953" /db_xref="GeneID:947582" CDS complement(3215727..3216491) /gene="yqjH" /locus_tag="b3070" /gene_synonym="ECK3060; JW3041" /codon_start=1 /transl_table=11 /product="putative siderophore interacting protein" /protein_id="NP_417541.1" /db_xref="GI:16130965" /db_xref="ASAP:ABE-0010079" /db_xref="UniProtKB/Swiss-Prot:Q46871" /db_xref="EcoGene:EG12953" /db_xref="GeneID:947582" /translation="MNNTPRYPQRVRNDLRFRELTVLRVERISAGFQRIVLGGEALDG FTSRGFDDHSKLFFPQPDAHFVPPTVTEEGIVWPEGPRPPSRDYTPLYDELRHELAID FFIHDGGVASGWAMQAQPGDKLTVAGPRGSLVVPEDYAYQLYVCDESGMPALRRRLET LSKLAVKPQVSALVSVRDNACQDYLAHLDGFNIEWLAHDEQAVDARLAQMQIPADDYF IWITGEGKVVKNLSRRFEAEQYDPQRVRAAAYWHAK" repeat_region 3216601..3216678 /note="REP228 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene 3216779..3217402 /gene="yqjI" /locus_tag="b3071" /gene_synonym="ECK3061; JW3042" /db_xref="EcoGene:EG12954" /db_xref="GeneID:947584" CDS 3216779..3217402 /gene="yqjI" /locus_tag="b3071" /gene_synonym="ECK3061; JW3042" /codon_start=1 /transl_table=11 /product="PadR family putative transcriptional regulator" /protein_id="NP_417542.1" /db_xref="GI:16130966" /db_xref="ASAP:ABE-0010084" /db_xref="UniProtKB/Swiss-Prot:P64588" /db_xref="EcoGene:EG12954" /db_xref="GeneID:947584" /translation="MSHHHEGCCKHEGQPRHEGCCKGEKSEHEHCGHGHQHEHGQCCG GRHGRGGGRRQRFFGHGELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVIYP TLDFLQEQSLITIREEEGGKKQIALTEQGAQWLEENREQVEMIEERIKARCVGAALRQ NPQMKRALDNFKAVLDLRVNQSDISDAQIKKIIAVIDRAAFDITQLD" repeat_region 3217434..3217522 /note="REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(3217556..3219076) /gene="aer" /locus_tag="b3072" /gene_synonym="air; ECK3062; JW3043; yqjJ" /db_xref="EcoGene:EG12955" /db_xref="GeneID:945301" CDS complement(3217556..3219076) /gene="aer" /locus_tag="b3072" /gene_synonym="air; ECK3062; JW3043; yqjJ" /function="regulator; Degradation of small molecules: Carbon compounds" /GO_component="GO:0019866 - organelle inner membrane" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0042330 - taxis" /note="aerotaxis sensor receptor, flavoprotein" /codon_start=1 /transl_table=11 /product="fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component" /protein_id="NP_417543.1" /db_xref="GI:16130967" /db_xref="ASAP:ABE-0010087" /db_xref="UniProtKB/Swiss-Prot:P50466" /db_xref="EcoGene:EG12955" /db_xref="GeneID:945301" /translation="MSSHPYVTQQNTPLADDTTLMSTTDLQSYITHANDTFVQVSGYT LQELQGQPHNMVRHPDMPKAAFADMWFTLKKGEPWSGIVKNRRKNGDHYWVRANAVPM VREGKISGYMSIRTRATDEEIAAVEPLYKALNAGRTSKRIHKGLVVRKGWLGKLPSLP LRWRARGVMTLMFILLAAMLWFVAAPVVTYILCALVVLLASACFEWQIVRPIENVAHQ ALKVATGERNSVEHLNRSDELGLTLRAVGQLGLMCRWLINDVSSQVSSVRNGSETLAK GTDELNEHTQQTVDNVQQTVATMNQMAASVKQNSATASAADKLSITASNAAVQGGEAM TTVIKTMDDIADSTQRIGTITSLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGE VRHLASRSANAANDIRKLIDASADKVQSGSQQVHAAGRTMEDIVAQVKNVTQLIAQIS HSTLEQADGLSSLTRAVDELNLITQKNAELVEESAQVSAMVKHRASRLEDAVTVLH" gene 3219494..3220873 /gene="patA" /locus_tag="b3073" /gene_synonym="ECK3063; JW5510; ygjG" /db_xref="EcoGene:EG12718" /db_xref="GeneID:947120" CDS 3219494..3220873 /gene="patA" /locus_tag="b3073" /gene_synonym="ECK3063; JW5510; ygjG" /EC_number="2.6.1.29" /function="putative enzyme; Amino acid biosynthesis: Arginine" /GO_process="GO:0006526 - arginine biosynthetic process; GO:0008615 - pyridoxine biosynthetic process" /note="probable ornithine aminotransferase" /codon_start=1 /transl_table=11 /product="putrescine:2-oxoglutaric acid aminotransferase, PLP-dependent" /protein_id="NP_417544.5" /db_xref="GI:145698310" /db_xref="ASAP:ABE-0010092" /db_xref="UniProtKB/Swiss-Prot:P42588" /db_xref="EcoGene:EG12718" /db_xref="GeneID:947120" /translation="MNRLPSSASALACSAHALNLIEKRTLDHEEMKALNREVIEYFKE HVNPGFLEYRKSVTAGGDYGAVEWQAGSLNTLVDTQGQEFIDCLGGFGIFNVGHRNPV VVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKL AKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAM RTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTG MGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFG GNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMA IEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALA AMRVSVEEA" repeat_region 3220880..3220910 /note="REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(3220915..3221247) /gene="ygjH" /locus_tag="b3074" /gene_synonym="ECK3064; JW3045" /db_xref="EcoGene:EG12719" /db_xref="GeneID:946251" CDS complement(3220915..3221247) /gene="ygjH" /locus_tag="b3074" /gene_synonym="ECK3064; JW3045" /function="putative enzyme; Not classified" /GO_process="GO:0006418 - tRNA aminoacylation for protein translation" /note="putative tRNA synthetase" /codon_start=1 /transl_table=11 /product="putative tRNA binding protein; putative tRNA corner chaperone" /protein_id="NP_417545.1" /db_xref="GI:16130969" /db_xref="ASAP:ABE-0010094" /db_xref="UniProtKB/Swiss-Prot:P42589" /db_xref="EcoGene:EG12719" /db_xref="GeneID:946251" /translation="METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQ TVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERM MPAGVRVV" gene 3221466..3222449 /gene="ebgR" /locus_tag="b3075" /gene_synonym="ECK3065; JW3046" /db_xref="EcoGene:EG10254" /db_xref="GeneID:947586" CDS 3221466..3222449 /gene="ebgR" /locus_tag="b3075" /gene_synonym="ECK3065; JW3046" /function="regulator; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006350 - transcription" /note="regulator of ebg operon" /codon_start=1 /transl_table=11 /product="transcriptional repressor" /protein_id="NP_417546.1" /db_xref="GI:16130970" /db_xref="ASAP:ABE-0010099" /db_xref="UniProtKB/Swiss-Prot:P06846" /db_xref="EcoGene:EG10254" /db_xref="GeneID:947586" /translation="MATLKDIAIEAGVSLATVSRVLNDDPTLNVKEETKHRILEIAEK LEYKTSSARKLQTGAVNQHHILAIYSYQQELEINDPYYLAIRHGIETQCEKLGIELTN CYEHSGLPDIKNVTGILIVGKPTPALRAAASALTDNICFIDFHEPGSGYDAVDIDLAR ISKEIIDFYINQGVNRIGFIGGEDEPGKADIREVAFAEYGRLKQVVREEDIWRGGFSS SSGYELAKQMLAREDYPKALFVASDSIAIGVLRAIHERGLNIPQDISLISVNDIPTAR FTFPPLSTVRIHSEMMGSQGVNLVYEKARDGRALPLLVFVPSKLKLRGTTR" gene 3222633..3225725 /gene="ebgA" /locus_tag="b3076" /gene_synonym="ECK3066; JW5511" /db_xref="EcoGene:EG10252" /db_xref="GeneID:947583" CDS 3222633..3225725 /gene="ebgA" /locus_tag="b3076" /gene_synonym="ECK3066; JW5511" /EC_number="3.2.1.23" /function="enzyme; Degradation of small molecules: Carbon compounds" /experiment="N-terminus verified by Edman degradation: PMID 7492325" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="evolved beta-D-galactosidase, alpha subunit; cryptic gene" /codon_start=1 /transl_table=11 /product="evolved beta-D-galactosidase, alpha subunit" /protein_id="YP_026199.1" /db_xref="GI:49176308" /db_xref="ASAP:ABE-0010104" /db_xref="UniProtKB/Swiss-Prot:P06864" /db_xref="EcoGene:EG10252" /db_xref="GeneID:947583" /translation="MNRWENIQLTHENRLAPRAYFFSYDSVAQARTFARETSSLFLPL SGQWNFHFFDHPLQVPEAFTSELMADWGHITVPAMWQMEGHGKLQYTDEGFPFPIDVP FVPSDNPTGAYQRIFTLSDGWQGKQTLIKFDGVETYFEVYVNGQYVGFSKGSRLTAEF DISAMVKTGDNLLCVRVMQWADSTYVEDQDMWWSAGIFRDVYLVGKHLTHINDFTVRT DFDEAYCDATLSCEVVLENLAASPVVTTLEYTLFDGERVVHSSAIDHLAIEKLTSASF AFTVEQPQQWSAESPYLYHLVMTLKDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYV MLHGVNRHDNDHRKGRAVGMDRVEKDLQLMKQHNINSVRTAHYPNDPRFYELCDIYGL FVMAETDVESHGFANVGDISRITDDPQWEKVYVERIVRHIHAQKNHPSIIIWSLGNES GYGCNIRAMYHAAKALDDTRLVHYEEDRDAEVVDIISTMYTRVPLMNEFGEYPHPKPR IICEYAHAMGNGPGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDHGNVWYKFGGD YGDYPNNYNFCLDGLIYSDQTPGPGLKEYKQVIAPVKIHARDLTRGELKVENKLWFTT LDDYTLHAEVRAEGETLATQQIKLRDVAPNSEAPLQITLPQLDAREAFLNITVTKDSR TRYSEAGHPIATYQFPLKENTAQPVPFAPNNARPLTLEDDRLSCTVRGYNFAITFSKM SGKPTSWQVNGESLLTREPKINFFKPMIDNHKQEYEGLWQPNHLQIMQEHLRDFAVEQ SDGEVLIISRTVIAPPVFDFGMRCTYIWRIAADGQVNVALSGERYGDYPHIIPCIGFT MGINGEYDQVAYYGRGPGENYADSQQANIIDIWRSTVDAMFENYPFPQNNGNRQHVRW TALTNRHGNGLLVVPQRPINFSAWHYTQENIHAAQHCNELQRSDDITLNLDHQLLGLG SNSWGSEVLDSWRVWFRDFSYGFTLLPVSGGEATAQSLASYEFGAGFFSTNLHSENKQ " gene 3225722..3226171 /gene="ebgC" /locus_tag="b3077" /gene_synonym="ECK3067; JW3048" /db_xref="EcoGene:EG10253" /db_xref="GeneID:947581" CDS 3225722..3226171 /gene="ebgC" /locus_tag="b3077" /gene_synonym="ECK3067; JW3048" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="evolved beta-D-galactosidase, beta subunit; cryptic gene" /codon_start=1 /transl_table=11 /product="evolved beta-D-galactosidase, beta subunit; cupin superfamily" /protein_id="NP_417548.1" /db_xref="GI:16130972" /db_xref="ASAP:ABE-0010106" /db_xref="UniProtKB/Swiss-Prot:P0AC73" /db_xref="EcoGene:EG10253" /db_xref="GeneID:947581" /translation="MRIIDNLEQFRQIYASGKKWQRCVEAIENIDNIQPGVAHSIGDS LTYRVETDSATDALFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLK GCGETVEVHEGQIVICDIHEAYRFICNNAVKKVVLKVTIEDGYFHNK" gene 3226234..3227667 /gene="ygjI" /locus_tag="b3078" /gene_synonym="ebgB; ECK3068; JW5512" /db_xref="EcoGene:EG12720" /db_xref="GeneID:947579" CDS 3226234..3227667 /gene="ygjI" /locus_tag="b3078" /gene_synonym="ebgB; ECK3068; JW5512" /function="orf; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative oxidoreductase" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="YP_026200.1" /db_xref="GI:49176309" /db_xref="ASAP:ABE-0010110" /db_xref="UniProtKB/Swiss-Prot:P42590" /db_xref="EcoGene:EG12720" /db_xref="GeneID:947579" /translation="MSDTKRNTIGKFGLLSLTFAAVYSFNNVINNNIELGLASAPMFF LATIFYFIPFCLIIAEFVSLNKNSEAGVYAWVKSSLGGRWAFITAYTYWFVNLFFFTS LLPRVIAYASYAFLGYEYIMTPVATTIISMVLFAFSTWVSTNGAKMLGPITSVTSTLM LLLTLSYILLAGTALVGGVQPADAITVDAMIPNFNWAFLGVTTWIFMAAGGAESVAVY VNDVKGGSKSFVKVIILAGIFIGVLYSVSSVLINVFVSSKELKFTGGSVQVFHGMAAY FGLPEALMNRFVGLVSFTAMFGSLLMWTATPVKIFFSEIPEGIFGKKTVELNENGVPA RAAWIQFLIVIPLMIIPMLGSNTVQDLMNTIINMTAAASMLPPLFIMLAYLNLRAKLD HLPRDFRMGSRRTGIIVVSMLIAIFAVGFVASTFPTGANILTIIFYNVGGIVIFLGFA WWKYSKYIKGLTAEERHIEATPASNVD" gene 3227801..3228871 /gene="ygjJ" /locus_tag="b3079" /gene_synonym="ECK3069; JW3050" /db_xref="EcoGene:EG12721" /db_xref="GeneID:947597" CDS 3227801..3228871 /gene="ygjJ" /locus_tag="b3079" /gene_synonym="ECK3069; JW3050" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_417550.1" /db_xref="GI:16130974" /db_xref="ASAP:ABE-0010115" /db_xref="UniProtKB/Swiss-Prot:P42591" /db_xref="EcoGene:EG12721" /db_xref="GeneID:947597" /translation="MKLITAPCRALLALPFCYAFSAAGEEARPAEHDDTKTPAITSTS SPSFRFYGELGVGGYMDLEGENKHKYSDGTYIEGGLEMKYGSWFGLIYGEGWTVQADH DGNAWVPDHSWGGFEGGINRFYGGYRTNDGTEIMLSLRQDSSLDDLQWWGDFTPDLGY VIPNTRDIMTALKVQNLSGNFRYSVTATPAGHHDESKAWLHFGKYDRYDDKYTYPAMM NGYIQYDLAEGITWMNGLEITDGTGQLYLTGLLTPNFAARAWHHTGRADGLDVPGSES GMMVSAMYEALKGVYLSTAYTYAKHRPDHADDETTSFMQFGIWYEYGGGRFATAFDSR FYMKNASHDPSDQIFLMQYFYW" gene 3228888..3231239 /gene="ygjK" /locus_tag="b3080" /gene_synonym="ECK3070; JW3051" /db_xref="EcoGene:EG12722" /db_xref="GeneID:947596" CDS 3228888..3231239 /gene="ygjK" /locus_tag="b3080" /gene_synonym="ECK3070; JW3051" /function="enzyme; Not classified" /note="putative isomerase" /codon_start=1 /transl_table=11 /product="alpha-glucosidase" /protein_id="NP_417551.1" /db_xref="GI:16130975" /db_xref="ASAP:ABE-0010118" /db_xref="UniProtKB/Swiss-Prot:P42592" /db_xref="EcoGene:EG12722" /db_xref="GeneID:947596" /translation="MKIKTILTPVTCALLISFSAHAANADNYKNVINRTGAPQYMKDY DYDDHQRFNPFFDLGAWHGHLLPDGPNTMGGFPGVALLTEEYINFMASNFDRLTVWQD GKKVDFTLEAYSIPGALVQKLTAKDVQVEMTLRFATPRTSLLETKITSNKPLDLVWDG ELLEKLEAKEGKPLSDKTIAGEYPDYQRKISATRDGLKVTFGKVRATWDLLTSGESEY QVHKSLPVQTEINGNRFTSKAHINGSTTLYTTYSHLLTAQEVSKEQMQIRDILARPAF YLTASQQRWEEYLKKGLTNPDATPEQTRVAVKAIETLNGNWRSPGGAVKFNTVTPSVT GRWFSGNQTWPWDTWKQAFAMAHFNPDIAKENIRAVFSWQIQPGDSVRPQDVGFVPDL IAWNLSPERGGDGGNWNERNTKPSLAAWSVMEVYNVTQDKTWVAEMYPKLVAYHDWWL RNRDHNGNGVPEYGATRDKAHNTESGEMLFTVKKGDKEETQSGLNNYARVVEKGQYDS LEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLG YSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQ FYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFN TFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAK GLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQ" repeat_region 3231252..3231534 /note="REP231 (repetitive extragenic palindromic) element; contains 6 REP sequences" gene 3231665..3233683 /gene="fadH" /locus_tag="b3081" /gene_synonym="ECK3071; JW3052; ygjL" /db_xref="EcoGene:EG12723" /db_xref="GeneID:947594" CDS 3231665..3233683 /gene="fadH" /locus_tag="b3081" /gene_synonym="ECK3071; JW3052; ygjL" /EC_number="1.3.1.34" /function="orf; Not classified" /GO_process="GO:0019395 - fatty acid oxidation" /codon_start=1 /transl_table=11 /product="2,4-dienoyl-CoA reductase, NADH and FMN-linked" /protein_id="NP_417552.1" /db_xref="GI:16130976" /db_xref="ASAP:ABE-0010124" /db_xref="UniProtKB/Swiss-Prot:P42593" /db_xref="EcoGene:EG12723" /db_xref="GeneID:947594" /translation="MSYPSLFAPLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFY AERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQI LHTGRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGYDGVE VMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSM LDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKL KGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQSGRADEINT CIGCNQACLDQIFVGKVTSCLVNPRACHETKMPILPAVQKKNLAVVGAGPAGLAFAIN AAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVT ADQLQAFDETILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGF DTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKAS KPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVIC AGQEPNRALAQPLIDSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI" repeat_region 3233699..3233719 /note="REP232 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(3233728..3234144) /gene="higA" /locus_tag="b3082" /gene_synonym="ECK3072; JW3053; ygjM" /db_xref="EcoGene:EG12724" /db_xref="GeneID:947593" CDS complement(3233728..3234144) /gene="higA" /locus_tag="b3082" /gene_synonym="ECK3072; JW3053; ygjM" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent" /codon_start=1 /transl_table=11 /product="antitoxinof the HigB-HigA toxin-antitoxin system" /protein_id="NP_417553.1" /db_xref="GI:16130977" /db_xref="ASAP:ABE-0010126" /db_xref="UniProtKB/Swiss-Prot:P67701" /db_xref="EcoGene:EG12724" /db_xref="GeneID:947593" /translation="MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLND PENPLLDLVCAKITAWEESAPEFAEFNAMAQAMPGGIAVIRTLMDQYGLTLSDLPEIG SKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID" gene complement(3234141..3234455) /gene="higB" /locus_tag="b3083" /gene_synonym="ECK3073; JW3054; ygjN" /db_xref="EcoGene:EG12725" /db_xref="GeneID:947591" CDS complement(3234141..3234455) /gene="higB" /locus_tag="b3083" /gene_synonym="ECK3073; JW3054; ygjN" /codon_start=1 /transl_table=11 /product="mRNA interferase toxin of the HigB-HigA toxin-antitoxin system" /protein_id="NP_417554.1" /db_xref="GI:16130978" /db_xref="ASAP:ABE-0010128" /db_xref="UniProtKB/Swiss-Prot:P64578" /db_xref="EcoGene:EG12725" /db_xref="GeneID:947591" /translation="MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAV FPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKCYIREVMTHKEYDFFTAVHRTKG KK" repeat_region 3234638..3234723 /note="REP233 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(3234739..3235875) /gene="rlmG" /locus_tag="b3084" /gene_synonym="ECK3074; JW5513; rsmD; ygjO" /db_xref="EcoGene:EG12726" /db_xref="GeneID:947589" CDS complement(3234739..3235875) /gene="rlmG" /locus_tag="b3084" /gene_synonym="ECK3074; JW5513; rsmD; ygjO" /function="enzyme; rRNA modification" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="23S rRNA m(2)G1835 methyltransferase, SAM-dependent" /protein_id="NP_417555.4" /db_xref="GI:90111535" /db_xref="ASAP:ABE-0010133" /db_xref="UniProtKB/Swiss-Prot:P42596" /db_xref="EcoGene:EG12726" /db_xref="GeneID:947589" /translation="MSHLDNGFRSLTLQRFPATDDVNPLQAWEAADEYLLQQLDDTEI RGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDSTAD YPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVLG PTTTTLAWKKARLINCTFNEPQLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGAR FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM PEALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING ELYIVANRHLDYFHKLKKIFGNCTTIATNNKFVVLKAVKLGRRR" gene 3235960..3236463 /gene="ygjP" /locus_tag="b3085" /gene_synonym="ECK3075; JW5514" /db_xref="EcoGene:EG12727" /db_xref="GeneID:947650" CDS 3235960..3236463 /gene="ygjP" /locus_tag="b3085" /gene_synonym="ECK3075; JW5514" /codon_start=1 /transl_table=11 /product="putative metal dependent hydrolase" /protein_id="NP_417556.2" /db_xref="GI:90111536" /db_xref="ASAP:ABE-0010138" /db_xref="UniProtKB/Swiss-Prot:P42597" /db_xref="EcoGene:EG12727" /db_xref="GeneID:947650" /translation="MSNLTYLQGYPEQLLSQVRTLINEQRLGDVLAKRYPGTHDYATD KALWQYTQDLKNQFLRNAPPINKVMYDNKIHVLKNALGLHTAVSRVQGGKLKAKVEIR VATVFRNAPEPFLRMIVVHELAHLKEKEHNKAFYQLCCHMEPQYHQLEFDTRLWLTQL SLGQNKI" gene 3236540..3237232 /gene="ygjQ" /locus_tag="b3086" /gene_synonym="ECK3076; JW3057" /db_xref="EcoGene:EG12728" /db_xref="GeneID:947598" CDS 3236540..3237232 /gene="ygjQ" /locus_tag="b3086" /gene_synonym="ECK3076; JW3057" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="DUF218 superfamily protein" /protein_id="NP_417557.1" /db_xref="GI:16130981" /db_xref="ASAP:ABE-0010142" /db_xref="UniProtKB/Swiss-Prot:P42598" /db_xref="EcoGene:EG12728" /db_xref="GeneID:947598" /translation="MLRAFARLLLRICFSRRTLKIACLLLLVAGATILIADRVMVNAS KQLTWSDVNAVPARNVGLLLGARPGNRYFTRRIDTAAALYHAGKVKWLLVSGDNGRKN YDEASGMQQALIAKGVPAKVIFCDYAGFSTLDSVVRAKKVFGENHITIISQEFHNQRA IWLAKQYGIDAIGFNAPDLNMKHGFYTQLREKLARVSAVIDAKILHRQPKYLGPSVMI GPFSEHGCPAQK" gene 3237311..3238297 /gene="ygjR" /locus_tag="b3087" /gene_synonym="ECK3077; JW3058" /db_xref="EcoGene:EG12729" /db_xref="GeneID:947600" CDS 3237311..3238297 /gene="ygjR" /locus_tag="b3087" /gene_synonym="ECK3077; JW3058" /codon_start=1 /transl_table=11 /product="putative NAD(P)-dependent dehydrogenase" /protein_id="NP_417558.2" /db_xref="GI:145698311" /db_xref="ASAP:ABE-0010148" /db_xref="UniProtKB/Swiss-Prot:P42599" /db_xref="EcoGene:EG12729" /db_xref="GeneID:947600" /translation="MIRFAVIGTNWITRQFVEAAHESGKYKLTAVYSRSLEQAQHFAN DFSVEHLFTSLEAMAESDAIDAVYIASPNSLHFSQTQLFLSHKINVICEKPLASNLAE VDAAIACARENQVVLFEAFKTACLPNFHLLRQALPKVGKLRKVFFNYCQYSSRYQRYL DGENPNTFNPAFSNGSIMDIGFYCLASAVALFGEPKSVQATASLLASGVDAQGVVVMD YGDFSVTLQHSKVSDSVLASEIQGEAGSLVIEKLSECQKVCFVPRGSQMQDLTQPQHI NTMLYEAELFATLVDEHLVDHPGLAVSRITAKLLTEIRRQTGVIFPADSVKL" gene 3238580..3239545 /gene="alx" /locus_tag="b3088" /gene_synonym="ECK3079; JW5515; ygjT" /db_xref="EcoGene:EG12731" /db_xref="GeneID:947607" CDS 3238580..3239545 /gene="alx" /locus_tag="b3088" /gene_synonym="ECK3079; JW5515; ygjT" /function="putative transport; Not classified" /GO_process="GO:0006950 - response to stress" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative membrane-bound redox modulator" /protein_id="YP_026201.1" /db_xref="GI:49176311" /db_xref="ASAP:ABE-0010151" /db_xref="UniProtKB/Swiss-Prot:P42601" /db_xref="EcoGene:EG12731" /db_xref="GeneID:947607" /translation="MNTVGTPLLWGGFAVVVAIMLAIDLLLQGRRGAHAMTMKQAAAW SLVWVTLSLLFNAAFWWYLVQTEGRAVADPQALAFLTGYLIEKSLAVDNVFVWLMLFS YFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDWILYIFGAFLLFTGVKMAL AHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYATPLMLVLILVELSDVI FAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERFSMLKYGLAVILVFI GIKMLIVDFYHIPIAVSLGVVFGILVMTFIINAWVNYRHDKQRGG" gene 3239944..3241188 /gene="sstT" /locus_tag="b3089" /gene_synonym="ECK3080; JW3060; ygjU" /db_xref="EcoGene:EG12732" /db_xref="GeneID:947605" CDS 3239944..3241188 /gene="sstT" /locus_tag="b3089" /gene_synonym="ECK3080; JW3060; ygjU" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0006564 - L-serine biosynthetic process; GO:0009088 - threonine biosynthetic process" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="sodium:serine/threonine symporter" /protein_id="NP_417560.1" /db_xref="GI:16130984" /db_xref="ASAP:ABE-0010159" /db_xref="UniProtKB/Swiss-Prot:P0AGE4" /db_xref="EcoGene:EG12732" /db_xref="GeneID:947605" /translation="MTTQRSPGLFRRLAHGSLVKQILVGLVLGILLAWISKPAAEAVG LLGTLFVGALKAVAPILVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALAAVVF SFAFPSTLHLSSSAGDISPPSGIVEVMRGLVMSMVSNPIDALLKGNYIGILVWAIGLG FALRHGNETTKNLVNDMSNAVTFMVKLVIRFAPIGIFGLVSSTLATTGFSTLWGYAQL LVVLVGCMLLVALVVNPLLVWWKIRRNPFPLVLLCLRESGVYAFFTRSSAANIPVNMA LCEKLNLDRDTYSVSIPLGATINMAGAAITITVLTLAAVNTLGIPVDLPTALLLSVVA SLCACGASGVAGGSLLLIPLACNMFGISNDIAMQVVAVGFIIGVLQDSCETALNSSTD VLFTAAACQAEDDRLANSALRN" gene complement(3241193..3241744) /gene="ygjV" /locus_tag="b3090" /gene_synonym="ECK3081; JW3061" /db_xref="EcoGene:EG12733" /db_xref="GeneID:947604" CDS complement(3241193..3241744) /gene="ygjV" /locus_tag="b3090" /gene_synonym="ECK3081; JW3061" /codon_start=1 /transl_table=11 /product="Imp-YgjV family inner membrane protein" /protein_id="NP_417561.1" /db_xref="GI:16130985" /db_xref="ASAP:ABE-0010161" /db_xref="UniProtKB/Swiss-Prot:P42603" /db_xref="EcoGene:EG12733" /db_xref="GeneID:947604" /translation="MTAYWLAQGVGVIAFLIGITTFFNRDERRFKKQLSVYSAVIGVH FFLLGTYPAGASAILNAIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIG TIVSTWALFCCKGLTMRCVMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFW RMQKRGIDPFKVEKTPSAVDERG" gene complement(3241827..3243314) /gene="uxaA" /locus_tag="b3091" /gene_synonym="ECK3082; JW3062; ygjW" /db_xref="EcoGene:EG12734" /db_xref="GeneID:947603" CDS complement(3241827..3243314) /gene="uxaA" /locus_tag="b3091" /gene_synonym="ECK3082; JW3062; ygjW" /EC_number="4.2.1.7" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="altronate hydrolase" /protein_id="NP_417562.1" /db_xref="GI:16130986" /db_xref="ASAP:ABE-0010164" /db_xref="UniProtKB/Swiss-Prot:P42604" /db_xref="EcoGene:EG12734" /db_xref="GeneID:947603" /translation="MQYIKIHALDNVAVALADLAEGTEVSVDNQTVTLRQDVARGHKF ALTDIAKGANVIKYGLPIGYALADIAAGVHVHAHNTRTNLSDLDQYRYQPDFQDLPAQ AADREVQIYRRANGDVGVRNELWILPTVGCVNGIARQIQNRFLKETNNAEGTDGVFLF SHTYGCSQLGDDHINTRTMLQNMVRHPNAGAVLVIGLGCENNQVAAFRETLGDIDPER VHFMICQQQDDEIEAGIEHLHQLYNVMRNDKREPGKLSELKFGLECGGSDGLSGITAN PMLGRFSDYVIANGGTTVLTEVPEMFGAEQLLMDHCRDEATFEKLVTMVNDFKQYFIA HDQPIYENPSPGNKAGGITTLEDKSLGCTQKAGSSVVVDVLRYGERLKTPGLNLLSAP GNDAVATSALAGAGCHMVLFSTGRGTPYGGFVPTVKIATNSELAAKKKHWIDFDAGQL IHGKAMPQLLEEFIDTIVEFANGKQTCNERNDFRELAIFKSGVTL" gene complement(3243329..3244741) /gene="uxaC" /locus_tag="b3092" /gene_synonym="ECK3083; JW3063; ygjX; ygjY; ygjZ" /db_xref="EcoGene:EG12737" /db_xref="GeneID:947599" CDS complement(3243329..3244741) /gene="uxaC" /locus_tag="b3092" /gene_synonym="ECK3083; JW3063; ygjX; ygjY; ygjZ" /EC_number="5.3.1.12" /function="enzyme; Degradation of small molecules: Carbon compounds" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="uronate isomerase" /protein_id="NP_417563.1" /db_xref="GI:16130987" /db_xref="ASAP:ABE-0010167" /db_xref="UniProtKB/Swiss-Prot:P0A8G3" /db_xref="EcoGene:EG12737" /db_xref="GeneID:947599" /translation="MTPFMTEDFLLDTEFARRLYHDYAKDQPIFDYHCHLPPQQIAED YRFKNLYDIWLKGDHYKWRAMRTNGVAERLCTGDASDREKFDAWAATVPHTIGNPLYH WTHLELRRPFGITGKLLSPSTADEIWNECNELLAQDNFSARGIMQQMNVKMVGTTDDP IDSLEHHAEIAKDGSFTIKVLPSWRPDKAFNIEQATFNDYMAKLGEVSDTDIRRFADL QTALTKRLDHFAAHGCKVSDHALDVVMFAEANEAELDSILARRLAGETLSEHEVAQFK TAVLVFLGAEYARRGWVQQYHIGALRNNNLRQFKLLGPDVGFDSINDRPMAEELSKLL SKQNEENLLPKTILYCLNPRDNEVLGTMIGNFQGEGMPGKMQFGSGWWFNDQKDGMER QMTQLAQLGLLSRFVGMLTDSRSFLSYTRHEYFRRILCQMIGRWVEAGEAPADINLLG EMVKNICFNNARDYFAIELN" gene 3245224..3246522 /gene="exuT" /locus_tag="b3093" /gene_synonym="ECK3084; JW3064" /db_xref="EcoGene:EG12738" /db_xref="GeneID:947601" CDS 3245224..3246522 /gene="exuT" /locus_tag="b3093" /gene_synonym="ECK3084; JW3064" /function="transport; Transport of small molecules: Carbohydrates, organic acids, alcohols" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="transport of hexuronates" /codon_start=1 /transl_table=11 /product="hexuronate transporter" /protein_id="NP_417564.2" /db_xref="GI:674842734" /db_xref="ASAP:ABE-0010171" /db_xref="UniProtKB/Swiss-Prot:P0AA78" /db_xref="EcoGene:EG12738" /db_xref="GeneID:947601" /translation="MRKIKGLRWYMIALVTLGTVLGYLTRNTVAAAAPTLMEELNIST QQYSYIIAAYSAAYTVMQPVAGYVLDVLGTKIGYAMFAVLWAVFCGATALAGSWGGLA VARGAVGAAEAAMIPAGLKASSEWFPAKERSIAVGYFNVGSSIGAMIAPPLVVWAIVM HSWQMAFIISGALSFIWAMAWLIFYKHPRDQKHLTDEERDYIINGQEAQHQVSTAKKM SVGQILRNRQFWGIALPRFLAEPAWGTFNAWIPLFMFKVYGFNLKEIAMFAWMPMLFA DLGCILGGYLPPLFQRWFGVNLIVSRKMVVTLGAVLMIGPGMIGLFTNPYVAIMLLCI GGFAHQALSGALITLSSDVFGRNEVATANGLTGMSAWLASTLFALVVGALADTIGFSP LFAVLAVFDLLGALVIWTVLQNKPAIEVAQETHNDPAPQH" gene 3246652..3247428 /gene="exuR" /locus_tag="b3094" /gene_synonym="ECK3085; JW3065" /db_xref="EcoGene:EG12739" /db_xref="GeneID:947602" CDS 3246652..3247428 /gene="exuR" /locus_tag="b3094" /gene_synonym="ECK3085; JW3065" /function="regulator; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006350 - transcription" /note="negative regulator of exu regulon, exuT, uxaAC, and uxuB" /codon_start=1 /transl_table=11 /product="hexuronate regulon transcriptional repressor; autorepressor" /protein_id="NP_417565.2" /db_xref="GI:90111537" /db_xref="ASAP:ABE-0010176" /db_xref="UniProtKB/Swiss-Prot:P0ACL2" /db_xref="EcoGene:EG12739" /db_xref="GeneID:947602" /translation="MEITEPRRLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNV SRTVVREAIIMLEVEGYVEVRKGSGIHVVSNQPRHQQAADNNMEFANYGPFELLQARQ LIESNIAEFAATQVTKQDIMKLMAIQEQARGEQCFRDSEWDLQFHIQVALATQNSALA AIVEKMWTQRSHNPYWKKLHEHIDSRTVDNWCDDHDQILKALIRKDPHAAKLAMWQHL ENTKIMLFNETSDDFEFNADRYLFAENPVVHLDTATSGSK" gene 3247773..3248435 /gene="yqjA" /locus_tag="b3095" /gene_synonym="ecfL; ECK3086; JW3066" /db_xref="EcoGene:EG12740" /db_xref="GeneID:947643" CDS 3247773..3248435 /gene="yqjA" /locus_tag="b3095" /gene_synonym="ecfL; ECK3086; JW3066" /function="membrane; inner membrane; cell division" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="general envelope maintenance protein; DedA family inner membrane protein; putative multidrug efflux transporter" /protein_id="NP_417566.1" /db_xref="GI:16130990" /db_xref="ASAP:ABE-0010181" /db_xref="UniProtKB/Swiss-Prot:P0AA63" /db_xref="EcoGene:EG12740" /db_xref="GeneID:947643" /translation="MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLP AAFLPGDSLLVLVGVLIAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNW LSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMS GLLWVLILTTLGYMLGKTPVFLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGN RG" gene 3248439..3248822 /gene="mzrA" /locus_tag="b3096" /gene_synonym="ecfM; ECK3087; JW3067; yqjB" /db_xref="EcoGene:EG12741" /db_xref="GeneID:947619" CDS 3248439..3248822 /gene="mzrA" /locus_tag="b3096" /gene_synonym="ecfM; ECK3087; JW3067; yqjB" /codon_start=1 /transl_table=11 /product="modulator of EnvZ/OmpR regulon" /protein_id="NP_417567.1" /db_xref="GI:16130991" /db_xref="ASAP:ABE-0010183" /db_xref="UniProtKB/Swiss-Prot:P42615" /db_xref="EcoGene:EG12741" /db_xref="GeneID:947619" /translation="MQIPRMSLRQLAWSGAVLLLVGTLLLAWSAVRQQESTLAIRAVH QGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYI IAQQDNNSQAMQWLTRLRDNSHRFG" gene 3248969..3249337 /gene="yqjC" /locus_tag="b3097" /gene_synonym="ECK3088; JW5516" /db_xref="EcoGene:EG12742" /db_xref="GeneID:947622" CDS 3248969..3249337 /gene="yqjC" /locus_tag="b3097" /gene_synonym="ECK3088; JW5516" /codon_start=1 /transl_table=11 /product="DUF1090 family putative periplasmic protein" /protein_id="NP_417568.2" /db_xref="GI:90111538" /db_xref="ASAP:ABE-0010188" /db_xref="UniProtKB/Swiss-Prot:P42616" /db_xref="EcoGene:EG12742" /db_xref="GeneID:947622" /translation="MKYRIALAVSLFALSAGSYATTLCQEKEQNILKEISYAEKHQNQ NRIDGLNKALSEVRANCSDSQLRADHQKKIAKQKDEVAERQQDLAEAKQKGDADKIAK RERKLAEAQEELKKLEARDY" gene 3249375..3249680 /gene="yqjD" /locus_tag="b3098" /gene_synonym="ECK3089; JW3069" /db_xref="EcoGene:EG12743" /db_xref="GeneID:947614" CDS 3249375..3249680 /gene="yqjD" /locus_tag="b3098" /gene_synonym="ECK3089; JW3069" /codon_start=1 /transl_table=11 /product="membrane-anchored ribosome-binding protein" /protein_id="NP_417569.1" /db_xref="GI:16130993" /db_xref="ASAP:ABE-0010192" /db_xref="UniProtKB/Swiss-Prot:P64581" /db_xref="EcoGene:EG12743" /db_xref="GeneID:947614" /translation="MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAE QALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR" gene 3249683..3250087 /gene="yqjE" /locus_tag="b3099" /gene_synonym="ECK3090; JW3070" /db_xref="EcoGene:EG12744" /db_xref="GeneID:947611" CDS 3249683..3250087 /gene="yqjE" /locus_tag="b3099" /gene_synonym="ECK3090; JW3070" /codon_start=1 /transl_table=11 /product="DUF1469 family inner membrane protein" /protein_id="NP_417570.1" /db_xref="GI:16130994" /db_xref="ASAP:ABE-0010195" /db_xref="UniProtKB/Swiss-Prot:P64585" /db_xref="EcoGene:EG12744" /db_xref="GeneID:947611" /translation="MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEK ANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIW TLRKSRKSTLLRHTRHELANDRQLLEEESREQ" gene 3250077..3250376 /gene="yqjK" /locus_tag="b3100" /gene_synonym="ECK3091; JW3071" /db_xref="EcoGene:EG14314" /db_xref="GeneID:947610" CDS 3250077..3250376 /gene="yqjK" /locus_tag="b3100" /gene_synonym="ECK3091; JW3071" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_417571.1" /db_xref="GI:16130995" /db_xref="ASAP:ABE-0010197" /db_xref="UniProtKB/Swiss-Prot:Q47710" /db_xref="EcoGene:EG14314" /db_xref="GeneID:947610" /translation="MSSKVERERRKAQLLSQIQQQRLDLSASRREWLETTGAYDRRWN MLLSLRSWALVGSSVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG" gene 3250562..3250954 /gene="yqjF" /locus_tag="b3101" /gene_synonym="ECK3092; JW5850" /db_xref="EcoGene:EG12745" /db_xref="GeneID:947608" CDS 3250562..3250954 /gene="yqjF" /locus_tag="b3101" /gene_synonym="ECK3092; JW5850" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative quinol oxidase subunit" /protein_id="NP_417572.2" /db_xref="GI:90111539" /db_xref="ASAP:ABE-0010200" /db_xref="UniProtKB/Swiss-Prot:P42619" /db_xref="EcoGene:EG12745" /db_xref="GeneID:947608" /translation="MKKLEDVGVLVARILMPILFITAGWGKITGYAGTQQYMEAMGVP GFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNFAEGVNSLMFMKN LTISGGFLLLAITGPGAYSIDRLLNKKW" gene 3251024..3252010 /gene="yqjG" /locus_tag="b3102" /gene_synonym="ECK3093; JW3073" /db_xref="EcoGene:EG12746" /db_xref="GeneID:947615" CDS 3251024..3252010 /gene="yqjG" /locus_tag="b3102" /gene_synonym="ECK3093; JW3073" /function="putative enzyme; Not classified" /note="putative transferase" /codon_start=1 /transl_table=11 /product="putative S-transferase" /protein_id="NP_417573.1" /db_xref="GI:16130997" /db_xref="ASAP:ABE-0010203" /db_xref="UniProtKB/Swiss-Prot:P42620" /db_xref="EcoGene:EG12746" /db_xref="GeneID:947615" /translation="MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTG TGGFIAEKDRYHLYVSLACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSF PGATGDTLYQNEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAF DALGAKAGDYYPPALQTKIDELNGWIYDTVNNGVYKAGFATSQEAYDEAVAKVFESLA RLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRD IYQMPGIAETVNFDHIRNHYFRSHKTINPTGIISIGPWQDLDEPHGRDVRFG" repeat_region 3252065..3252162 /note="RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene 3252304..3252669 /gene="yhaH" /locus_tag="b3103" /gene_synonym="ECK3094; JW3074" /db_xref="EcoGene:EG12747" /db_xref="GeneID:947617" CDS 3252304..3252669 /gene="yhaH" /locus_tag="b3103" /gene_synonym="ECK3094; JW3074" /function="putative carrier; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /note="putative cytochrome" /codon_start=1 /transl_table=11 /product="DUF805 family inner membrane protein" /protein_id="NP_417574.1" /db_xref="GI:16130998" /db_xref="ASAP:ABE-0010207" /db_xref="UniProtKB/Swiss-Prot:P64590" /db_xref="EcoGene:EG12747" /db_xref="GeneID:947617" /translation="MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKML GWQRAGGEGILTTIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFN CQAGTPGENRFGPDPKLEP" repeat_region 3252683..3252705 /note="REP235 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene 3252911..3253267 /gene="yhaI" /locus_tag="b3104" /gene_synonym="ECK3095; JW3075" /db_xref="EcoGene:EG12748" /db_xref="GeneID:947612" CDS 3252911..3253267 /gene="yhaI" /locus_tag="b3104" /gene_synonym="ECK3095; JW3075" /function="putative carrier; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /note="putative cytochrome" /codon_start=1 /transl_table=11 /product="DUF805 family inner membrane protein" /protein_id="NP_417575.1" /db_xref="GI:16130999" /db_xref="ASAP:ABE-0010211" /db_xref="UniProtKB/Swiss-Prot:P64592" /db_xref="EcoGene:EG12748" /db_xref="GeneID:947612" /translation="MQWYLSVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLIL GLELPYLSMLYLLATFLPVLALAIRRLHDTDRSGAWALLFFVPFIGWLVLLVFFCTEG TSGSNRYGNDPKFGSN" gene complement(3253318..3254214) /gene="yhaJ" /locus_tag="b3105" /gene_synonym="ECK3096; JW3076" /db_xref="EcoGene:EG12749" /db_xref="GeneID:947621" CDS complement(3253318..3254214) /gene="yhaJ" /locus_tag="b3105" /gene_synonym="ECK3096; JW3076" /function="putative regulator; Not classified" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /note="putative transcriptional regulator LYSR-type" /codon_start=1 /transl_table=11 /product="LysR family putative transcriptional regulator" /protein_id="NP_417576.1" /db_xref="GI:16131000" /db_xref="ASAP:ABE-0010213" /db_xref="UniProtKB/Swiss-Prot:P67660" /db_xref="EcoGene:EG12749" /db_xref="GeneID:947621" /translation="MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQK LEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIV TEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSS EINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLD KQPRLTVSTIEDKRQALLAGLGVATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWR RDSMGEAKSWCLREIPKLFNGK" gene 3254319..3255020 /gene="yhaK" /locus_tag="b3106" /gene_synonym="ECK3097; JW3077" /db_xref="EcoGene:EG12750" /db_xref="GeneID:947620" CDS 3254319..3255020 /gene="yhaK" /locus_tag="b3106" /gene_synonym="ECK3097; JW3077" /codon_start=1 /transl_table=11 /product="redox-sensitive bicupin" /protein_id="NP_417577.1" /db_xref="GI:16131001" /db_xref="ASAP:ABE-0010217" /db_xref="UniProtKB/Swiss-Prot:P42624" /db_xref="EcoGene:EG12750" /db_xref="GeneID:947620" /translation="MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLN QEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYS EHNLSKDKPLTRMQLWLDACPQRENPLIQKLALNMGKQQLIASPEGAMGSLQLRQQVW LHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITL VADSPLRALLIDLPV" gene 3255043..3255207 /gene="yhaL" /locus_tag="b3107" /gene_synonym="ECK3098; JW5517" /db_xref="EcoGene:EG12751" /db_xref="GeneID:947618" CDS 3255043..3255207 /gene="yhaL" /locus_tag="b3107" /gene_synonym="ECK3098; JW5517" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_417578.2" /db_xref="GI:90111540" /db_xref="ASAP:ABE-0010219" /db_xref="UniProtKB/Swiss-Prot:P42625" /db_xref="EcoGene:EG12751" /db_xref="GeneID:947618" /translation="MSKKLAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAE TRLAEDEATA" repeat_region 3255217..3255319 /note="REP236 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(3255341..3256651) /gene="yhaM" /locus_tag="b4470" /gene_synonym="ECK3099; JW5518; yhaN" /db_xref="EcoGene:EG12752" /db_xref="GeneID:2847723" CDS complement(3255341..3256651) /gene="yhaM" /locus_tag="b4470" /gene_synonym="ECK3099; JW5518; yhaN" /note="conserved hypothetical protein" /codon_start=1 /transl_table=11 /product="putative L-serine dehydratase alpha chain" /protein_id="YP_026202.1" /db_xref="GI:49176312" /db_xref="ASAP:ABE-0174100" /db_xref="UniProtKB/Swiss-Prot:P42626" /db_xref="EcoGene:EG12752" /db_xref="GeneID:2847723" /translation="MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAEL EGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQ AIADAKALLAAGKVSVKIQEPCDEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHDG VVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEG LSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQ GITATMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAA GMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDT AVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR" gene complement(3256679..3258010) /gene="yhaO" /locus_tag="b3110" /gene_synonym="ECK3100; JW5519" /db_xref="EcoGene:EG12754" /db_xref="GeneID:947628" CDS complement(3256679..3258010) /gene="yhaO" /locus_tag="b3110" /gene_synonym="ECK3100; JW5519" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport system permease protein" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="YP_026203.3" /db_xref="GI:145698312" /db_xref="ASAP:ABE-0010228" /db_xref="UniProtKB/Swiss-Prot:P42628" /db_xref="EcoGene:EG12754" /db_xref="GeneID:947628" /translation="MEIASNKGVIADASTPAGRAGMSESEWREAIKFDSTDTGWVIMS IGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSV ISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGL VLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLV KNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFF YAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFG VYLGFREATQGIVMNILRRKMPAEKINENLVQRGIMIFAILLAWSAIVLNAPVLSFTS ICSPIFGMVGCLIPAWLVYKVPALHKYKGMSLYLIIVTGLLLCVSPFLAFS" gene complement(3258285..3259649) /gene="tdcG" /locus_tag="b4471" /gene_synonym="ECK3101; JW5520; yhaP; yhaQ" /db_xref="EcoGene:EG12756" /db_xref="GeneID:2847724" CDS complement(3258285..3259649) /gene="tdcG" /locus_tag="b4471" /gene_synonym="ECK3101; JW5520; yhaP; yhaQ" /EC_number="4.3.1.17" /GO_process="GO:0009063 - cellular amino acid catabolic process" /note="L-serine dehydratase" /codon_start=1 /transl_table=11 /product="L-serine dehydratase 3, anaerobic" /protein_id="YP_026204.1" /db_xref="GI:49176314" /db_xref="ASAP:ABE-0174101" /db_xref="UniProtKB/Swiss-Prot:P42630" /db_xref="EcoGene:EG12756" /db_xref="GeneID:2847724" /translation="MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSH IVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGA HIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEELLSKTYYSVGGGFIVEEEHFGLS HDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHD GIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENA AGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISG AEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPC IERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIK VVCG" gene complement(3259721..3260110) /gene="tdcF" /locus_tag="b3113" /gene_synonym="ECK3102; JW5521; yhaR" /db_xref="EcoGene:EG12757" /db_xref="GeneID:947624" CDS complement(3259721..3260110) /gene="tdcF" /locus_tag="b3113" /gene_synonym="ECK3102; JW5521; yhaR" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="putative reactive intermediate deaminase" /protein_id="NP_417583.4" /db_xref="GI:90111542" /db_xref="ASAP:ABE-0010240" /db_xref="UniProtKB/Swiss-Prot:P0AGL2" /db_xref="EcoGene:EG12757" /db_xref="GeneID:947624" /translation="MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPA DVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATY PTRSCVQVARLPKDVKLEIEAIAVRSA" gene complement(3260124..3262418) /gene="tdcE" /locus_tag="b3114" /gene_synonym="ECK3103; JW5522; yhaS" /db_xref="EcoGene:EG12758" /db_xref="GeneID:947623" CDS complement(3260124..3262418) /gene="tdcE" /locus_tag="b3114" /gene_synonym="ECK3103; JW5522; yhaS" /EC_number="2.3.1.54" /function="putative enzyme; Energy metabolism, carbon: Anaerobic respiration" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009061 - anaerobic respiration; GO:0009063 - cellular amino acid catabolic process; GO:0006113 - fermentation" /note="probable formate acetyltransferase 3" /codon_start=1 /transl_table=11 /product="pyruvate formate-lyase 4/2-ketobutyrate formate-lyase" /protein_id="YP_026205.1" /db_xref="GI:49176316" /db_xref="ASAP:ABE-0010242" /db_xref="UniProtKB/Swiss-Prot:P42632" /db_xref="EcoGene:EG12758" /db_xref="GeneID:947623" /translation="MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGD ESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIV GLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPD MLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDL EATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNG GAMSLGRTASFLDIYIERDFKAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSG DPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYA AQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYA INGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDK YSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDG EYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNT PDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKE DPVRKTNLVGLLDGYFHHEADVEGGQHLNVNVMNREMLLDAIEHPEKYPNLTIRVSGY AVRFNALTREQQQDVISRTFTQAL" gene complement(3262452..3263660) /gene="tdcD" /locus_tag="b3115" /gene_synonym="ECK3104; JW5806; yhaA" /db_xref="EcoGene:EG11172" /db_xref="GeneID:947635" CDS complement(3262452..3263660) /gene="tdcD" /locus_tag="b3115" /gene_synonym="ECK3104; JW5806; yhaA" /EC_number="2.7.2.15" /function="putative enzyme; Not classified" /GO_process="GO:0009063 - cellular amino acid catabolic process" /note="propionate kinase/acetate kinase II, anaerobic" /codon_start=1 /transl_table=11 /product="propionate kinase/acetate kinase C, anaerobic" /protein_id="NP_417585.2" /db_xref="GI:145698313" /db_xref="ASAP:ABE-0010245" /db_xref="UniProtKB/Swiss-Prot:P11868" /db_xref="EcoGene:EG11172" /db_xref="GeneID:947635" /translation="MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAF LSVNGGEPAPLAHHSYEGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITD EVIDNIRRVSPLAPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLP WKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQS VDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLS SDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLI RRLVMEHLAVLGLEIDTEMNNRSNSCGERIVSSENARVICAVIPTNEEKMIALDAIHL GKVNAPAEFA" gene complement(3263686..3265017) /gene="tdcC" /locus_tag="b3116" /gene_synonym="ECK3105; JW3087" /db_xref="EcoGene:EG10991" /db_xref="GeneID:947629" CDS complement(3263686..3265017) /gene="tdcC" /locus_tag="b3116" /gene_synonym="ECK3105; JW3087" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009088 - threonine biosynthetic process" /note="anaerobically inducible L-threonine, L-serine permease" /codon_start=1 /transl_table=11 /product="L-threonine/L-serine transporter" /protein_id="NP_417586.1" /db_xref="GI:16131009" /db_xref="ASAP:ABE-0010247" /db_xref="UniProtKB/Swiss-Prot:P0AAD8" /db_xref="EcoGene:EG10991" /db_xref="GeneID:947629" /translation="MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRA GFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITF LYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLM VKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIM VFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLF TLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGH YLGTLEGLNGLVLKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAM GAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF" gene complement(3265039..3266028) /gene="tdcB" /locus_tag="b3117" /gene_synonym="ECK3106; JW3088" /db_xref="EcoGene:EG10990" /db_xref="GeneID:947633" CDS complement(3265039..3266028) /gene="tdcB" /locus_tag="b3117" /gene_synonym="ECK3106; JW3088" /EC_number="4.3.1.19" /function="enzyme; Degradation of small molecules: Amino acids" /experiment="N-terminus verified by Edman degradation: PMID 6751404" /GO_process="GO:0009063 - cellular amino acid catabolic process" /note="threonine dehydratase, catabolic" /codon_start=1 /transl_table=11 /product="L-threonine dehydratase, catabolic" /protein_id="NP_417587.1" /db_xref="GI:16131010" /db_xref="ASAP:ABE-0010249" /db_xref="UniProtKB/Swiss-Prot:P0AGF6" /db_xref="EcoGene:EG10990" /db_xref="GeneID:947633" /translation="MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEI FLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGK VVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIA GQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAA SFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQR NKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA" gene complement(3266127..3267065) /gene="tdcA" /locus_tag="b3118" /gene_synonym="ECK3107; JW3089" /db_xref="EcoGene:EG10989" /db_xref="GeneID:947494" CDS complement(3266127..3267065) /gene="tdcA" /locus_tag="b3118" /gene_synonym="ECK3107; JW3089" /function="regulator; Degradation of small molecules: Amino acids" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0009063 - cellular amino acid catabolic process; GO:0006350 - transcription" /note="transcriptional activator of tdc operon" /codon_start=1 /transl_table=11 /product="tdc operon transcriptional activator" /protein_id="NP_417588.1" /db_xref="GI:16131011" /db_xref="ASAP:ABE-0010252" /db_xref="UniProtKB/Swiss-Prot:P0ACQ7" /db_xref="EcoGene:EG10989" /db_xref="GeneID:947494" /translation="MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIIND IEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFG FPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKL QDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNG ISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAV WSKNYRIKKAASVLVELAKEYSSYNGCRRRQLIEVG" gene 3267380..3267598 /gene="tdcR" /locus_tag="b3119" /gene_synonym="ECK3108; JW5525" /db_xref="EcoGene:EG10992" /db_xref="GeneID:944907" CDS 3267380..3267598 /gene="tdcR" /locus_tag="b3119" /gene_synonym="ECK3108; JW5525" /function="regulator; Degradation of small molecules: Amino acids" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0009063 - cellular amino acid catabolic process; GO:0006350 - transcription" /note="threonine dehydratase operon activator protein" /codon_start=1 /transl_table=11 /product="L-threonine dehydratase operon activator protein" /protein_id="NP_417589.4" /db_xref="GI:162135908" /db_xref="ASAP:ABE-0010255" /db_xref="UniProtKB/Swiss-Prot:P11866" /db_xref="EcoGene:EG10992" /db_xref="GeneID:944907" /translation="MSKFSNFIINKPFSVINNAACHIFSRYLLENKHLFYQYFKISNT CIDHLEQLINVNFFSSDRTSFCECNRFP" gene 3267854..3268393 /gene="yhaB" /locus_tag="b3120" /gene_synonym="ECK3109; JW3091" /db_xref="EcoGene:EG11173" /db_xref="GeneID:947705" CDS 3267854..3268393 /gene="yhaB" /locus_tag="b3120" /gene_synonym="ECK3109; JW3091" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="NP_417590.2" /db_xref="GI:90111544" /db_xref="ASAP:ABE-0010261" /db_xref="UniProtKB/Swiss-Prot:P11865" /db_xref="EcoGene:EG11173" /db_xref="GeneID:947705" /translation="MKGFPIAHIFHPSIPPMHAVVNNHNRNIDYWTVKRKFAEIVSTN DVNKIYSISNELRRVLSAITALNFYHGDVPSVMIRIQPENMSPFIIDISTGEHDDYII QTLDVGTFAPFGEQCTCSAVNKKELECIKETISKYCAKFTRKEAILTPLVHFNKTSIT SDCWQILFFSPDHFNNDFY" gene 3268415..3269602 /gene="yhaC" /locus_tag="b3121" /gene_synonym="ECK3110; JW3092" /db_xref="EcoGene:EG11174" /db_xref="GeneID:947557" CDS 3268415..3269602 /gene="yhaC" /locus_tag="b3121" /gene_synonym="ECK3110; JW3092" /codon_start=1 /transl_table=11 /product="pentapetide repeats-related protein" /protein_id="NP_417591.1" /db_xref="GI:16131014" /db_xref="ASAP:ABE-0010263" /db_xref="UniProtKB/Swiss-Prot:P11864" /db_xref="EcoGene:EG11174" /db_xref="GeneID:947557" /translation="MFPVSSIGNDISSDLVRRKMNDLPESPTGNNLEALAPGIEKLKQ TSIEMVTLLNTLQPGGKCIITGDFQKELAYLQNVILYNVSSLRLDFLGYNAQIIQRSD NTCELTINEPLKNQEISTGNININCPLKDIYNEIRRLNVIFSCGTGDIVDLSSLDLRN VDLDYYDFTDKHMANTILNPFKLNSTNFTNANMFQVNFVSSTQNATISWDYLLKITPV LISISDMYSEEKIKFVESCLNEPGDITEEQLKIMRFAIIKSIPRATLTDKLENELTKE IYKSSSKIINCLNRIKLTEMKEFSSEKIYDYIDIIIEDYENTKENAYLVVPQINYTMD LNIEDSSSEELLSDNTLEKDENSPDNGFEVGEYNTYEAYNSEKQYFTREDYTYDYDLL NAI" repeat_region 3269722..3269819 /note="RIP237 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(3270216..3270592) /gene="rnpB" /locus_tag="b3123" /gene_synonym="ECK3111; JWR0070" /db_xref="EcoGene:EG30069" /db_xref="GeneID:947634" ncRNA complement(3270216..3270592) /ncRNA_class="RNase_P_RNA" /gene="rnpB" /locus_tag="b3123" /gene_synonym="ECK3111; JWR0070" /product="RNase P, M1 RNA component" /note="RNase P is an essential enzyme responsible for the processing of the 5' ends of precursors to tRNA, 4.5S RNA, and other naturally occurring stable RNA molecules; RNase P also affects gene expression of polycistronic operon mRNAs" /function="1.2.1 metabolism; macromolecule degradation; RNA" /function="2.2.3 information transfer; RNA related; RNA modification" /function="enzyme; Degradation of RNA" /db_xref="ASAP:ABE-0010269" /db_xref="EcoGene:EG30069" /db_xref="GeneID:947634" gene complement(3270625..3271770) /gene="garK" /locus_tag="b3124" /gene_synonym="ECK3112; JW3093; yhaD" /db_xref="EcoGene:EG11175" /db_xref="GeneID:947632" CDS complement(3270625..3271770) /gene="garK" /locus_tag="b3124" /gene_synonym="ECK3112; JW3093; yhaD" /EC_number="2.7.1.165" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="glycerate kinase I" /protein_id="NP_417593.4" /db_xref="GI:145698314" /db_xref="ASAP:ABE-0010271" /db_xref="UniProtKB/Swiss-Prot:P23524" /db_xref="EcoGene:EG11175" /db_xref="GeneID:947632" /translation="MKIVIAPDSYKESLSASEVAQAIEKGFREIFPDAQYVSVPVADG GEGTVEAMIAATQGAERHAWVTGPLGEKVNASWGISGDGKTAFIEMAAASGLELVPAE KRDPLVTTSRGTGELILQALESGATNIIIGIGGSATNDGGAGMVQALGAKLCDANGNE IGFGGGSLNTLNDIDISGLDPRLKDCVIRVACDVTNPLVGDNGASRIFGPQKGASEAM IVELDNNLSHYAEVIKKALHVDVKDVPGAGAAGGMGAALMAFLGAELKSGIEIVTTAL NLEEHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGSLTDDVGVVH QHGIDAVFSVLTSIGTLDEAFRGAYDNICRASRNIAATLAIGMRNAG" gene complement(3271867..3272751) /gene="garR" /locus_tag="b3125" /gene_synonym="ECK3113; JW5526; yhaE" /db_xref="EcoGene:EG11176" /db_xref="GeneID:947631" CDS complement(3271867..3272751) /gene="garR" /locus_tag="b3125" /gene_synonym="ECK3113; JW5526; yhaE" /EC_number="1.1.1.60" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0009441 - glycolate metabolic process" /note="tartronate semialdehyde reductase (TSAR)" /codon_start=1 /transl_table=11 /product="tartronate semialdehyde reductase" /protein_id="NP_417594.3" /db_xref="GI:145698315" /db_xref="ASAP:ABE-0010273" /db_xref="UniProtKB/Swiss-Prot:P0ABQ2" /db_xref="EcoGene:EG11176" /db_xref="GeneID:947631" /translation="MKVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAAGA ETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASR EISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT GEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAK APMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLGTAD HSALACYYEKLAKVEVTR" gene complement(3272787..3273557) /gene="garL" /locus_tag="b3126" /gene_synonym="ECK3114; JW3095; yhaF" /db_xref="EcoGene:EG10016" /db_xref="GeneID:947630" CDS complement(3272787..3273557) /gene="garL" /locus_tag="b3126" /gene_synonym="ECK3114; JW3095; yhaF" /EC_number="4.1.2.20" /experiment="N-terminus verified by Edman degradation: PMID 9772162" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="alpha-dehydro-beta-deoxy-D-glucarate aldolase" /protein_id="NP_417595.1" /db_xref="GI:16131018" /db_xref="ASAP:ABE-0010276" /db_xref="UniProtKB/Swiss-Prot:P23522" /db_xref="EcoGene:EG10016" /db_xref="GeneID:947630" /translation="MNNDVFPNKFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDWL VLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVET KEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDN VDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAP VEADARRYLEWGATFVAVGSDLGVFRSATQKLADTFKK" gene complement(3273573..3274907) /gene="garP" /locus_tag="b3127" /gene_synonym="ECK3115; JW3096; yhaU" /db_xref="EcoGene:EG12760" /db_xref="GeneID:947642" CDS complement(3273573..3274907) /gene="garP" /locus_tag="b3127" /gene_synonym="ECK3115; JW3096; yhaU" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="putative transport protein" /codon_start=1 /transl_table=11 /product="putative (D)-galactarate transporter" /protein_id="NP_417596.1" /db_xref="GI:16131019" /db_xref="ASAP:ABE-0010279" /db_xref="UniProtKB/Swiss-Prot:P0AA80" /db_xref="EcoGene:EG12760" /db_xref="GeneID:947642" /translation="MILDTVDEKKKGVHTRYLILLIIFIVTAVNYADRATLSIAGTEV AKELQLSAVSMGYIFSAFGWAYLLMQIPGGWLLDKFGSKKVYTYSLFFWSLFTFLQGF VDMFPLAWAGISMFFMRFMLGFSEAPSFPANARIVAAWFPTKERGTASAIFNSAQYFS LALFSPLLGWLTFAWGWEHVFTVMGVIGFVLTALWIKLIHNPTDHPRMSAEELKFISE NGAVVDMDHKKPGSAAASGPKLHYIKQLLSNRMMLGVFFGQYFINTITWFFLTWFPIY LVQEKGMSILKVGLVASIPALCGFAGGVLGGVFSDYLIKRGLSLTLARKLPIVLGMLL ASTIILCNYTNNTTLVVMLMALAFFGKGFGALGWPVISDTAPKEIVGLCGGVFNVFGN VASIVTPLVIGYLVSELHSFNAALVFVGCSALMAMVCYLFVVGDIKRMELQK" gene 3275282..3276853 /gene="garD" /locus_tag="b3128" /gene_synonym="ECK3116; JW3097; yhaG" /db_xref="EcoGene:EG12522" /db_xref="GeneID:947641" CDS 3275282..3276853 /gene="garD" /locus_tag="b3128" /gene_synonym="ECK3116; JW3097; yhaG" /EC_number="4.2.1.42" /GO_process="GO:0016052 - carbohydrate catabolic process" /codon_start=1 /transl_table=11 /product="D-galactarate dehydrogenase" /protein_id="NP_417597.1" /db_xref="GI:16131020" /db_xref="ASAP:ABE-0010284" /db_xref="UniProtKB/Swiss-Prot:P39829" /db_xref="EcoGene:EG12522" /db_xref="GeneID:947641" /translation="MANIEIRQETPTAFYIKVHDTDNVAIIVNDNGLKAGTRFPDGLE LIEHIPQGHKVALLDIPANGEIIRYGEVIGYAVRAIPRGSWIDESMVVLPEAPPLHTL PLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKIIERDL LPKYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNISLNPNFGGEVMVIGLGCEKL QPERLLTGTDDVQAIPVESASIVSLQDEKHVGFQSMVEDILQIAERHLQKLNQRQRET CPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTP RAVNEEVGKRLLEEMEWYDNYLNMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGK SAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVP VIKMATRTELANRWFDLMDINAGTIATGEETIEEVGWKLFHFILDVASGKKKTFSDQW GLHNQLAVFNPAPVT" gene 3277002..3277337 /gene="prlF" /locus_tag="b3129" /gene_synonym="ECK3117; JW3098; sohA" /db_xref="EcoGene:EG10955" /db_xref="GeneID:947639" CDS 3277002..3277337 /gene="prlF" /locus_tag="b3129" /gene_synonym="ECK3117; JW3098; sohA" /function="putative enzyme; Not classified" /note="putative protease; htrA suppressor protein" /codon_start=1 /transl_table=11 /product="antitoxin of the SohA(PrlF)-YhaV toxin-antitoxin system" /protein_id="NP_417598.1" /db_xref="GI:16131021" /db_xref="ASAP:ABE-0010287" /db_xref="UniProtKB/Swiss-Prot:P15373" /db_xref="EcoGene:EG10955" /db_xref="GeneID:947639" /translation="MPANARSHAVLTTESKVTIRGQTTIPAPVREALKLKPGQDSIHY EILPGGQVFMCRLGDEQEDHTMNAFLRFLDADIQNNPQKTRPFNIQQGKKLVAGMDVN IDDEIGDDE" gene 3277337..3277801 /gene="yhaV" /locus_tag="b3130" /gene_synonym="ECK3118; JW3099" /db_xref="EcoGene:EG12761" /db_xref="GeneID:947638" CDS 3277337..3277801 /gene="yhaV" /locus_tag="b3130" /gene_synonym="ECK3118; JW3099" /codon_start=1 /transl_table=11 /product="toxin of the SohB(PrlF)-YhaV toxin-antitoxin system" /protein_id="NP_417599.1" /db_xref="GI:16131022" /db_xref="ASAP:ABE-0010289" /db_xref="UniProtKB/Swiss-Prot:P64594" /db_xref="EcoGene:EG12761" /db_xref="GeneID:947638" /translation="MDFPQRVNGWALYAHPCFQETYDALVAEVETLKGKDPENYQRKA ATKLLAVVHKVIEEHITVNPSSPAFRHGKSLGSGKNKDWSRVKFGAGRYRLFFRYSEK EKVIILGWMNDENTLRTYGKKTDAYTVFSKMLKRGHPPADWETLTRETEETH" repeat_region 3277819..3277847 /note="REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(3277856..3278665) /gene="agaR" /locus_tag="b3131" /gene_synonym="ECK3119; JW3100; yhaW" /db_xref="EcoGene:EG12762" /db_xref="GeneID:947636" CDS complement(3277856..3278665) /gene="agaR" /locus_tag="b3131" /gene_synonym="ECK3119; JW3100; yhaW" /function="regulator; Not classified" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0046349 - amino sugar biosynthetic process; GO:0006350 - transcription" /note="putative DEOR-type transcriptional regulator of aga operon" /codon_start=1 /transl_table=11 /product="transcriptional repressor of the aga regulon" /protein_id="NP_417600.1" /db_xref="GI:16131023" /db_xref="ASAP:ABE-0010291" /db_xref="UniProtKB/Swiss-Prot:P0ACK2" /db_xref="EcoGene:EG12762" /db_xref="GeneID:947636" /translation="MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVS TVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEPSVEDKSALNTAMKRSVAKAAVE LIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLR RQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERII VVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEGLRKAGVEVILVGE" gene 3278914..3280194 /gene="kbaZ" /locus_tag="b3132" /gene_synonym="agaZ; ECK3120; JW3101; yhaX" /db_xref="EcoGene:EG12763" /db_xref="GeneID:947637" CDS 3278914..3280194 /gene="kbaZ" /locus_tag="b3132" /gene_synonym="agaZ; ECK3120; JW3101; yhaX" /EC_number="4.1.2.40" /function="putative enzyme; Not classified" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="putative tagatose 6-phosphate kinase 2" /codon_start=1 /transl_table=11 /product="tagatose 6-phosphate aldolase 1, kbaZ subunit" /protein_id="NP_417601.1" /db_xref="GI:16131024" /db_xref="ASAP:ABE-0010295" /db_xref="UniProtKB/Swiss-Prot:P0C8K0" /db_xref="EcoGene:EG12763" /db_xref="GeneID:947637" /translation="MKHLTEMVRQHKAGKTNGIYAVCSAHPLVLEAAIRYASANQTPL LIEATSNQVDQFGGYTGMTPADFRGFVCQLADSLNFPQDALILGGDHLGPNRWQNLPA AQAMANADDLIKSYVAAGFKKIHLDCSMSCQDDPIPLTDDIVAERAARLAKVAEETCL EHFGEADLEYVIGTEVPVPGGAHETLSELAVTTPDAARATLEAHRHAFEKQGLNAIWP RIIALVVQPGVEFDHTNVIDYQPAKASALSQMVENYETLIFEAHSTDYQTPQSLRQLV IDHFAILKVGPALTFALREALFSLAAIEEELVPAKACSGLRQVLEDVMLDRPEYWQSH YHGDGNARRLARGYSYSDRVRYYWPDSQIDDAFAHLVRNLADSPIPLPLISQYLPLQY VKVRSGELQPTPRELIINHIQDILAQYHTACEGQ" gene 3280217..3280690 /gene="agaV" /locus_tag="b3133" /gene_synonym="ECK3121; JW3102; yhaY" /db_xref="EcoGene:EG12764" /db_xref="GeneID:947648" CDS 3280217..3280690 /gene="agaV" /locus_tag="b3133" /gene_synonym="ECK3121; JW3102; yhaY" /EC_number="2.7.1.69" /function="enzyme; Central intermediary metabolism: Amino sugars" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0046349 - amino sugar biosynthetic process" /note="PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA)" /codon_start=1 /transl_table=11 /product="N-acetylgalactosamine-specific enzyme IIB component of PTS" /protein_id="NP_417602.4" /db_xref="GI:90111546" /db_xref="ASAP:ABE-0010297" /db_xref="UniProtKB/Swiss-Prot:P42904" /db_xref="EcoGene:EG12764" /db_xref="GeneID:947648" /translation="MPNIVLSRIDERLIHGQVGVQWVGFAGANLVLVANDEVAEDPVQ QNLMEMVLAEGIAVRFWTLQKVIDNIHRAADRQKILLVCKTPADFLTLVKGGVPVNRI NVGNMHYANGKQQIAKTVSVDAGDIAAFNDLKTAGVECFVQGVPTEPAVDLFKLL" gene 3280701..3281075 /gene="agaW" /locus_tag="b3134" /gene_synonym="ECK3122; JW3103; yhaZ" /pseudo /db_xref="EcoGene:EG12765" /db_xref="GeneID:947647" CDS 3280701..3281075 /gene="agaW" /locus_tag="b3134" /gene_synonym="ECK3122; JW3103; yhaZ" /GO_process="GO:0046349 - amino sugar biosynthetic process" /note="pseudogene, N-acetylgalactosamine-specific enzyme IIC component of PTS;enzyme; Central intermediary metabolism: Amino sugars; PTS system N-acetylgalactosameine-specific IIC component 2" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0010299" /db_xref="UniProtKB/Swiss-Prot:P42905" /db_xref="EcoGene:EG12765" /db_xref="GeneID:947647" gene 3281071..3281625 /gene="agaA" /locus_tag="b3135" /gene_synonym="ECK3123; JW5527; yraA" /pseudo /db_xref="EcoGene:EG12766" /db_xref="GeneID:947646" CDS 3281071..3281625 /gene="agaA" /locus_tag="b3135" /gene_synonym="ECK3123; JW5527; yraA" /note="pseudogene, N-acetylgalactosamine-6-phosphate deacetylase fragment; putative N-acetylgalactosamine-6-phosphate deacetylase" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0010302" /db_xref="UniProtKB/Swiss-Prot:P42906" /db_xref="EcoGene:EG12766" /db_xref="GeneID:947646" repeat_region 3281702..3281783 /note="REP239 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene 3281976..3283130 /gene="agaS" /locus_tag="b3136" /gene_synonym="ECK3124; JW3105; yraB" /db_xref="EcoGene:EG12767" /db_xref="GeneID:947645" CDS 3281976..3283130 /gene="agaS" /locus_tag="b3136" /gene_synonym="ECK3124; JW3105; yraB" /function="putative enzyme; Not classified" /note="putative tagatose-6-phosphate aldose/ketose isomerase" /codon_start=1 /transl_table=11 /product="tagatose-6-phosphate ketose/aldose isomerase" /protein_id="NP_417605.1" /db_xref="GI:16131028" /db_xref="ASAP:ABE-0010305" /db_xref="UniProtKB/Swiss-Prot:P42907" /db_xref="EcoGene:EG12767" /db_xref="GeneID:947645" /translation="MPENYTPAAAATGTWTEEEIRHQPRAWIRSLTNIDALRSALNNF LEPLLRKENLRIILTGAGTSAFIGDIIAPWLASHTGKNFSAVPTTDLVTNPMDYLNPA HPLLLISFGRSGNSPESVAAVELANQFVPECYHLPITCNEAGALYQNAINSDNAFALL MPAETHDRGFAMTSSITTMMASCLAVFAPETINSQTFRDVADRCQAILTSLGDFSEGV FGYAPWKRIVYLGSGGLQGAARESALKVLELTAGKLAAFYDSPTGFRHGPKSLVDDET LVVVFVSSHPYTRQYDLDLLAELRRDNQAMRVIAIAAESSDIVAAGPHIILPPSRHFI DVEQAFCFLMYAQTFALMQSLHMGNTPDTPSASGTVNRVVQGVIIHPWQA" gene 3283143..3284003 /gene="kbaY" /locus_tag="b3137" /gene_synonym="agaY; ECK3125; JW3106; kba; yraC" /db_xref="EcoGene:EG12768" /db_xref="GeneID:947644" CDS 3283143..3284003 /gene="kbaY" /locus_tag="b3137" /gene_synonym="agaY; ECK3125; JW3106; kba; yraC" /EC_number="4.1.2.40" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_process="GO:0016052 - carbohydrate catabolic process" /note="tagatose-bisphosphate aldolase 2" /codon_start=1 /transl_table=11 /product="tagatose 6-phosphate aldolase 1, kbaY subunit" /protein_id="NP_417606.1" /db_xref="GI:16131029" /db_xref="ASAP:ABE-0010307" /db_xref="UniProtKB/Swiss-Prot:P0AB74" /db_xref="EcoGene:EG12768" /db_xref="GeneID:947644" /translation="MSIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSP VILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAM IDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEA KRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFV RRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKIN VCGSANRISA" gene 3284170..3284646 /gene="agaB" /locus_tag="b3138" /gene_synonym="ECK3126; JW3107; yraD" /db_xref="EcoGene:EG12769" /db_xref="GeneID:947653" CDS 3284170..3284646 /gene="agaB" /locus_tag="b3138" /gene_synonym="ECK3126; JW3107; yraD" /EC_number="2.7.1.69" /function="enzyme; Central intermediary metabolism: Amino sugars" /GO_component="GO:0005737 - cytoplasm" /note="PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 1 (EIIB-AGA)" /codon_start=1 /transl_table=11 /product="N-acetylgalactosamine-specific enzyme IIB component of PTS" /protein_id="NP_417607.1" /db_xref="GI:16131030" /db_xref="ASAP:ABE-0010310" /db_xref="UniProtKB/Swiss-Prot:P42909" /db_xref="EcoGene:EG12769" /db_xref="GeneID:947653" /translation="MTSPNILLTRIDNRLVHGQVGVTWTSTIGANLLVVVDDVVANDD IQQKLMGITAETYGFGIRFFTIEKTINVIGKAAPHQKIFLICRTPQTVRKLVEGGIDL KDVNVGNMHFSEGKKQISSKVYVDDQDLTDLRFIKQRGVNVFIQDVPGDQKEQIPD" gene 3284685..3285488 /gene="agaC" /locus_tag="b3139" /gene_synonym="ECK3127; JW3108; yraE" /db_xref="EcoGene:EG12770" /db_xref="GeneID:947652" CDS 3284685..3285488 /gene="agaC" /locus_tag="b3139" /gene_synonym="ECK3127; JW3108; yraE" /EC_number="2.7.1.69" /function="enzyme; Central intermediary metabolism: Amino sugars" /note="PTS system N-acetylgalactosamine-specific IIC component 1" /codon_start=1 /transl_table=11 /product="N-acetylgalactosamine-specific enzyme IIC component of PTS" /protein_id="NP_417608.1" /db_xref="GI:16131031" /db_xref="ASAP:ABE-0010312" /db_xref="UniProtKB/Swiss-Prot:P42910" /db_xref="EcoGene:EG12770" /db_xref="GeneID:947652" /translation="MHEITLLQGLSLAALVFVLGIDFWLEALFLFRPIIVCTLTGAIL GDIQTGLITGGLTELAFAGLTPAGGVQPPNPIMAGLMTTVIAWSTGVDAKTAIGLGLP FSLLMQYVILFFYSAFSLFMTKADKCAKEADTAAFSRLNWTTMLIVASAYAVIAFLCT YLAQGAMQALVKAMPAWLTHGFEVAGGILPAVGFGLLLRVMFKAQYIPYLIAGFLFVC YIQVSNLLPVAVLGAGFAVYEFFNAKSRQQAQPQPVASKNEEEDYSNGI" gene 3285478..3286269 /gene="agaD" /locus_tag="b3140" /gene_synonym="ECK3128; JW3109; yraF" /db_xref="EcoGene:EG12771" /db_xref="GeneID:947649" CDS 3285478..3286269 /gene="agaD" /locus_tag="b3140" /gene_synonym="ECK3128; JW3109; yraF" /EC_number="2.7.1.69" /function="enzyme; Central intermediary metabolism: Amino sugars" /GO_process="GO:0046349 - amino sugar biosynthetic process" /note="PTS system, N-acetylglucosamine enzyme IID component 1" /codon_start=1 /transl_table=11 /product="N-acetylgalactosamine-specific enzyme IID component of PTS" /protein_id="NP_417609.1" /db_xref="GI:16131032" /db_xref="ASAP:ABE-0010314" /db_xref="UniProtKB/Swiss-Prot:P42911" /db_xref="EcoGene:EG12771" /db_xref="GeneID:947649" /translation="MGSEISKKDITRLGFRSSLLQASFNYERMQAGGFTWAMLPILKK IYKDDKPGLSAAMKDNLEFINTHPNLVGFLMGLLISMEEKGENRDTIKGLKVALFGPI AGIGDAIFWFTLLPIMAGICSSFASQGNLLGPILFFAVYLLIFFLRVGWTHVGYSVGV KAIDKVRENSQMIARSATILGITVIGGLIASYVHINVVTSFAIDNTHSVALQQDFFDK VFPNILPMAYTLLMYYFLRVKKAHPVLLIGVTFVLSIVCSAFGIL" gene 3286270..3287025 /gene="agaI" /locus_tag="b3141" /gene_synonym="ECK3129; JW3110; yraG" /db_xref="EcoGene:EG12772" /db_xref="GeneID:947985" CDS 3286270..3287025 /gene="agaI" /locus_tag="b3141" /gene_synonym="ECK3129; JW3110; yraG" /function="putative enzyme; Not classified" /note="putative galactosamine-6-phosphate isomerase" /codon_start=1 /transl_table=11 /product="galactosamine-6-phosphate isomerase" /protein_id="NP_417610.1" /db_xref="GI:16131033" /db_xref="ASAP:ABE-0010317" /db_xref="UniProtKB/Swiss-Prot:P42912" /db_xref="EcoGene:EG12772" /db_xref="GeneID:947985" /translation="MERGTASGGASLLKEFHPVQTLQQVENYTALSERASEYLLAVIR SKPNAVICLATGATPLLTYHYLVEKIHQQQVDVSQLTFVKLDEWVDLPLTMPGTCETF LQQHIVQPLGLREDQLISFRSEEINETECERVTNLIARKGGLDLCVLGLGKNGHLGLN EPGESLQPACHISQLDARTQQHEMLKTAGRPVTRGITLGLKDILNAREVLLLVTGEGK QDATDRFLTAKVSTAIPASFLWLHSNFICLINT" gene 3287426..3288010 /gene="yraH" /locus_tag="b3142" /gene_synonym="ECK3130; JW3111" /db_xref="EcoGene:EG12773" /db_xref="GeneID:947658" CDS 3287426..3288010 /gene="yraH" /locus_tag="b3142" /gene_synonym="ECK3130; JW3111" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="putative fimbrial-like protein" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_417611.1" /db_xref="GI:16131034" /db_xref="ASAP:ABE-0010325" /db_xref="UniProtKB/Swiss-Prot:P42913" /db_xref="EcoGene:EG12773" /db_xref="GeneID:947658" /translation="MNKVTKTAIAGLLALFAGNAAATDGEIVFDGEILKSACEINDSD KKIEVALGHYNAEQFRNIGERSPKIPFTIPLVNCPMTGWEHDNGNVEASFRLWLETRD NGTVPNFPNLAKVGSFAGIAATGVGIRIDDAESGNIMPLNAMGNDNTVYQIPAESNGI VNVDLIAYYVSTVVPSEITPGEADAIVNVTLDYR" gene 3288090..3288785 /gene="yraI" /locus_tag="b3143" /gene_synonym="ECK3131; JW3112" /db_xref="EcoGene:EG12774" /db_xref="GeneID:947657" CDS 3288090..3288785 /gene="yraI" /locus_tag="b3143" /gene_synonym="ECK3131; JW3112" /function="putative factor; Surface structures" /GO_process="GO:0006457 - protein folding" /note="putative chaperone" /codon_start=1 /transl_table=11 /product="putative periplasmic pilin chaperone" /protein_id="NP_417612.1" /db_xref="GI:16131035" /db_xref="ASAP:ABE-0010331" /db_xref="UniProtKB/Swiss-Prot:P42914" /db_xref="EcoGene:EG12774" /db_xref="GeneID:947657" /translation="MSKRTFAVILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAAL PVANKGAETPYLLQSWVDNIDGKSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENK ESLFYINVRAIPAKKKSDDVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRS DHSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAIND YGGSSGTETRPLQ" gene 3288814..3291330 /gene="yraJ" /locus_tag="b3144" /gene_synonym="ECK3132; JW3113" /db_xref="EcoGene:EG12775" /db_xref="GeneID:947656" CDS 3288814..3291330 /gene="yraJ" /locus_tag="b3144" /gene_synonym="ECK3132; JW3113" /function="putative membrane; Not classified" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_417613.1" /db_xref="GI:16131036" /db_xref="ASAP:ABE-0010333" /db_xref="UniProtKB/Swiss-Prot:P42915" /db_xref="EcoGene:EG12775" /db_xref="GeneID:947656" /translation="MPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYY FDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLL QPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQQLNLSIPQ IALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPW RLRNYSTWTRNDQTSSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLA SDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVSAGAFEINDLYPSSNSG DLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEAT AIYGLNNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGY QWRTQYIKDIPETNTNIAVSYYRYTNDGYFSFNEANTRNWDYNSRQKSEIQFNISQTI FDGVSLYASGSQQDYWGNNDKNRNISVGVSGQQWGVGYSLNYQYSRYTDQNNDRALSL NLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHN SSLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDAN GASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNR GAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDDTGQQSIVDEGGILYLSGISS KSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH" gene 3291341..3292432 /gene="yraK" /locus_tag="b3145" /gene_synonym="ECK3133; JW3114" /db_xref="EcoGene:EG12776" /db_xref="GeneID:947654" CDS 3291341..3292432 /gene="yraK" /locus_tag="b3145" /gene_synonym="ECK3133; JW3114" /function="putative structural component; Surface structures" /GO_component="GO:0009289 - pilus" /note="putative fimbrial protein" /codon_start=1 /transl_table=11 /product="putative fimbrial-like adhesin protein" /protein_id="NP_417614.1" /db_xref="GI:16131037" /db_xref="ASAP:ABE-0010335" /db_xref="UniProtKB/Swiss-Prot:P43319" /db_xref="EcoGene:EG12776" /db_xref="GeneID:947654" /translation="MKRAPLITGLLLISTSCAYASSGGCGADSTSGATNYSSVVDDVT VNQTDNVTGREFTSATLSSTNWQYACSCSAGKAVKLVYMVSPVLTTTGHQTGYYKLND SLDIKTTLQANDIPGLTTDQVVSVNTRFTQIKNNTVYSAATQTGVCQGDTSRYGPVNI GANTTFTLYVTKPFLGSMTIPKTDIAVIKGAWVDGMGSPSTGDFHDLVKLSIQGNLTA PQSCKINQGDVIKVNFGFINGQKFTTRNAMPDGFTPVDFDITYDCGDTSKIKNSLQMR IDGTTGVVDQYNLVARRRSSDNVPDVGIRIENLGGGVANIPFQNGILPVDPSGHGTVN MRAWPVNLVGGELETGKFQGTATITVIVR" gene complement(3292475..3293335) /gene="rsmI" /locus_tag="b3146" /gene_synonym="ECK3134; JW3115; yraL" /db_xref="EcoGene:EG12777" /db_xref="GeneID:947664" CDS complement(3292475..3293335) /gene="rsmI" /locus_tag="b3146" /gene_synonym="ECK3134; JW3115; yraL" /function="enzyme; rRNA modification" /codon_start=1 /transl_table=11 /product="16S rRNA C1402 2'-O-ribose methyltransferase, SAM-dependent" /protein_id="NP_417615.1" /db_xref="GI:16131038" /db_xref="ASAP:ABE-0010337" /db_xref="UniProtKB/Swiss-Prot:P67087" /db_xref="EcoGene:EG12777" /db_xref="GeneID:947664" /translation="MKQHQSADNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAE DTRHTGLLLQHFGINARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPG YHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIE AEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVK EDENRRKGEMVLIVEGHKAQEEDLPADALRTLALLQAELPLKKAAALAAEIHGVKKNA LYKYALEQQG" gene 3293400..3295436 /gene="lpoA" /locus_tag="b3147" /gene_synonym="ECK3135; JW3116; yraM" /db_xref="EcoGene:EG12778" /db_xref="GeneID:947663" CDS 3293400..3295436 /gene="lpoA" /locus_tag="b3147" /gene_synonym="ECK3135; JW3116; yraM" /function="factor; Not classified" /note="putative glycosylase" /codon_start=1 /transl_table=11 /product="OM lipoprotein stimulator of MrcA transpeptidase" /protein_id="NP_417616.1" /db_xref="GI:16131039" /db_xref="ASAP:ABE-0010343" /db_xref="UniProtKB/Swiss-Prot:P45464" /db_xref="EcoGene:EG12778" /db_xref="GeneID:947663" /translation="MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQ ADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDAQRREKT LLAVEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIA QEPLLGAKEKQQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDP DMMKAGIADWQKRYPNNPGAKMLPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTI QQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTVDGVASPAQASVSDLTGEQPAAQ PVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNV EELLKSNTPLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIP RSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTSELRAGVNGGSGIALTGSPITLRATT DSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGATL YASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMG VDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVINRNLSWLQYQQGQVVPVS" gene 3295394..3295789 /gene="yraN" /locus_tag="b3148" /gene_synonym="ECK3136; JW3117" /db_xref="EcoGene:EG12779" /db_xref="GeneID:947662" CDS 3295394..3295789 /gene="yraN" /locus_tag="b3148" /gene_synonym="ECK3136; JW3117" /codon_start=1 /transl_table=11 /product="UPF0102 family protein" /protein_id="NP_417617.1" /db_xref="GI:16131040" /db_xref="ASAP:ABE-0010346" /db_xref="UniProtKB/Swiss-Prot:P45465" /db_xref="EcoGene:EG12779" /db_xref="GeneID:947662" /translation="MATVPTRSGSPRQLTTKQTGDAWEAQARRWLEGKGLRFIAANVN ERGGEIDLIMREGRTTIFVEVRYRRSALYGGAAASVTRSKQHKLLQTARLWLARHNGS FDTVDCRFDVVAFTGNEVEWIKDAFNDHS" gene 3295809..3296399 /gene="diaA" /locus_tag="b3149" /gene_synonym="ECK3137; JW3118; yraO" /db_xref="EcoGene:EG12780" /db_xref="GeneID:947661" CDS 3295809..3296399 /gene="diaA" /locus_tag="b3149" /gene_synonym="ECK3137; JW3118; yraO" /codon_start=1 /transl_table=11 /product="DnaA initiator-associating factor for replication initiation" /protein_id="NP_417618.1" /db_xref="GI:16131041" /db_xref="ASAP:ABE-0010348" /db_xref="UniProtKB/Swiss-Prot:P66817" /db_xref="EcoGene:EG12780" /db_xref="GeneID:947661" /translation="MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKI LCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQ VRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVE IRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD" gene 3296409..3296984 /gene="yraP" /locus_tag="b3150" /gene_synonym="ecfH; ECK3138; JW3119" /db_xref="EcoGene:EG12781" /db_xref="GeneID:947659" CDS 3296409..3296984 /gene="yraP" /locus_tag="b3150" /gene_synonym="ecfH; ECK3138; JW3119" /function="putative transport; Not classified" /GO_component="GO:0042597 - periplasmic space" /note="putative periplasmic protein" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein" /protein_id="NP_417619.1" /db_xref="GI:16131042" /db_xref="ASAP:ABE-0010350" /db_xref="UniProtKB/Swiss-Prot:P64596" /db_xref="EcoGene:EG12781" /db_xref="GeneID:947659" /translation="MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQ VDDGTLEVRVNSALSKDEQIKKEARINVTAYQGKVLLVGQSPNAELSARAKQIAMGVD GANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMG LVTEREAKAAADIASRVSGVKRVTTAFTFIK" repeat_region 3296999..3297082 /note="REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(3297098..3298138) /gene="yraQ" /locus_tag="b3151" /gene_synonym="ECK3139; JW3120" /db_xref="EcoGene:EG12782" /db_xref="GeneID:947668" CDS complement(3297098..3298138) /gene="yraQ" /locus_tag="b3151" /gene_synonym="ECK3139; JW3120" /codon_start=1 /transl_table=11 /product="putative inner membrane permease" /protein_id="NP_417620.1" /db_xref="GI:16131043" /db_xref="ASAP:ABE-0010353" /db_xref="UniProtKB/Swiss-Prot:P45468" /db_xref="EcoGene:EG12782" /db_xref="GeneID:947668" /translation="MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWEPYYGKAFTA AETHSIGKSILAQADANPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLR TLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPVLNPAT LVFMGFVLGWGFAAIRLVAGLVMVLLIATLVQKWVRETPQTQAPVEIDIPEAQGGFFS RWGRALWTLFWSTIPVYILAVLVLGAARVWLFPHADGAVDNSLMWVVAMAVAGCLFVI PTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAV SGVIVGGLALLF" gene complement(3298211..3298846) /gene="yraR" /locus_tag="b3152" /gene_synonym="ECK3140; JW5528" /db_xref="EcoGene:EG12783" /db_xref="GeneID:947667" CDS complement(3298211..3298846) /gene="yraR" /locus_tag="b3152" /gene_synonym="ECK3140; JW5528" /codon_start=1 /transl_table=11 /product="putative nucleoside-diphosphate-sugar epimerase" /protein_id="NP_417621.2" /db_xref="GI:90111547" /db_xref="ASAP:ABE-0010356" /db_xref="UniProtKB/Swiss-Prot:P45469" /db_xref="EcoGene:EG12783" /db_xref="GeneID:947667" /translation="MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGV FNPHDPQLSDALAQVTDPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLG AQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNE TLFAPLFRLLPGNWKSIDARDVARVMLAESMRPEHEGVTILSSSELRKRAE" gene 3298974..3299492 /gene="yhbO" /locus_tag="b3153" /gene_synonym="ECK3141; JW5529" /db_xref="EcoGene:EG12784" /db_xref="GeneID:947666" CDS 3298974..3299492 /gene="yhbO" /locus_tag="b3153" /gene_synonym="ECK3141; JW5529" /codon_start=1 /transl_table=11 /product="stress-resistance protein" /protein_id="NP_417622.2" /db_xref="GI:90111548" /db_xref="ASAP:ABE-0010361" /db_xref="UniProtKB/Swiss-Prot:P45470" /db_xref="EcoGene:EG12784" /db_xref="GeneID:947666" /translation="MSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVK GKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFA ICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLP AFNREALRLLGA" gene complement(3299472..3299915) /gene="yhbP" /locus_tag="b3154" /gene_synonym="ECK3142; JW3123" /db_xref="EcoGene:EG12785" /db_xref="GeneID:947665" CDS complement(3299472..3299915) /gene="yhbP" /locus_tag="b3154" /gene_synonym="ECK3142; JW3123" /codon_start=1 /transl_table=11 /product="UPF0306 family protein" /protein_id="NP_417623.1" /db_xref="GI:16131046" /db_xref="ASAP:ABE-0010363" /db_xref="UniProtKB/Swiss-Prot:P67762" /db_xref="EcoGene:EG12785" /db_xref="GeneID:947665" /translation="METLIAISRWLAKQHVVTWCVQQEGELWCANAFYLFDAQKVAFY ILTEEKTRHAQMSGPQAAVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDLARKAYN RRFPVARMLSAPVWEIRLDEIKFTDNTLGFGKKMIWLRDSGTEQA" gene 3299966..3300268 /gene="yhbQ" /locus_tag="b3155" /gene_synonym="ECK3143; JW3124" /db_xref="EcoGene:EG12786" /db_xref="GeneID:947671" CDS 3299966..3300268 /gene="yhbQ" /locus_tag="b3155" /gene_synonym="ECK3143; JW3124" /codon_start=1 /transl_table=11 /product="GIY-YIG nuclease superfamily protein" /protein_id="NP_417624.1" /db_xref="GI:16131047" /db_xref="ASAP:ABE-0010370" /db_xref="UniProtKB/Swiss-Prot:P45472" /db_xref="EcoGene:EG12786" /db_xref="GeneID:947671" /translation="MTPWFLYLIRTADNKLYTGITTDVERRYQQHQSGKGAKALRGKG ELTLVFSAPVGDRSLALRAEYRVKQLTKRQKERLVAEGAGFAELLSSLQTPEIKSD" gene complement(3300255..3300758) /gene="yhbS" /locus_tag="b3156" /gene_synonym="ECK3144; JW3125" /db_xref="EcoGene:EG12788" /db_xref="GeneID:947670" CDS complement(3300255..3300758) /gene="yhbS" /locus_tag="b3156" /gene_synonym="ECK3144; JW3125" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="GNAT family putative N-acetyltransferase" /protein_id="NP_417625.1" /db_xref="GI:16131048" /db_xref="ASAP:ABE-0010373" /db_xref="UniProtKB/Swiss-Prot:P63417" /db_xref="EcoGene:EG12788" /db_xref="GeneID:947670" /translation="MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGL VATDDEGQVIGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNE FGYAAVVTLGDPALYSRFGFELAAHHDLRCRWPGTESAFQVHRLADDALNGVTGLVEY HEHFNRF" gene complement(3300752..3301276) /gene="yhbT" /locus_tag="b3157" /gene_synonym="ECK3145; JW3126" /db_xref="EcoGene:EG12789" /db_xref="GeneID:947669" CDS complement(3300752..3301276) /gene="yhbT" /locus_tag="b3157" /gene_synonym="ECK3145; JW3126" /codon_start=1 /transl_table=11 /product="SCP-2 sterol transfer family protein" /protein_id="NP_417626.1" /db_xref="GI:16131049" /db_xref="ASAP:ABE-0010375" /db_xref="UniProtKB/Swiss-Prot:P64599" /db_xref="EcoGene:EG12789" /db_xref="GeneID:947669" /translation="MLDKLRSRIVHLGPSLLSVPVKLTPFALKRQVLEQVLSWQFRQA LDDGELEFLEGRWLSIHVRDIDLQWFTSVVNGKLVVSQNAQADVSFSADASDLLMIAA RKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRMMLLQLADFVEAGMK TAPETKQTSVGEPC" gene 3301485..3302480 /gene="yhbU" /locus_tag="b3158" /gene_synonym="ECK3146; JW3127" /db_xref="EcoGene:EG12790" /db_xref="GeneID:949115" CDS 3301485..3302480 /gene="yhbU" /locus_tag="b3158" /gene_synonym="ECK3146; JW3127" /function="orf; Not classified" /note="putative collagenase" /codon_start=1 /transl_table=11 /product="U32 peptidase family protein" /protein_id="NP_417627.1" /db_xref="GI:16131050" /db_xref="ASAP:ABE-0010380" /db_xref="UniProtKB/Swiss-Prot:P45527" /db_xref="EcoGene:EG12790" /db_xref="GeneID:949115" /translation="MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTE KKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEY AAERYPHIERHVSVQASATNEEAINFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPL EVFAFGSLCIMSEGRCYLSSYLTGESPNTIGACSPARFVRWQQTPQGLESRLNEVLID RYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQR SPAYVSQVAKVWRQAIDRCKADPQNFVPQSAWMETLGSMSEGTQTTLGAYHRKWQ" gene 3302489..3303367 /gene="yhbV" /locus_tag="b3159" /gene_synonym="ECK3147; JW5530" /db_xref="EcoGene:EG12791" /db_xref="GeneID:949117" CDS 3302489..3303367 /gene="yhbV" /locus_tag="b3159" /gene_synonym="ECK3147; JW5530" /codon_start=1 /transl_table=11 /product="U32 peptidase family protein" /protein_id="NP_417628.2" /db_xref="GI:90111549" /db_xref="ASAP:ABE-0010382" /db_xref="UniProtKB/Swiss-Prot:P45475" /db_xref="EcoGene:EG12791" /db_xref="GeneID:949117" /translation="MKYSLGPVLWYWPKETLEEFYQQAATSSADVIYLGEAVCSKRRA TKVGDWLEMAKSLAGSGKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNM CAERKLPFVAGHALNCYNAVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRN QFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLN GIQTMSGYVYNLGNELASMQGLVDVVRLSPQGTDTFAMLDAFRANENGAAPLPLTANS DCNGYWRRLAGLELQA" gene 3303448..3304455 /gene="yhbW" /locus_tag="b3160" /gene_synonym="ECK3148; JW3129" /db_xref="EcoGene:EG12792" /db_xref="GeneID:947677" CDS 3303448..3304455 /gene="yhbW" /locus_tag="b3160" /gene_synonym="ECK3148; JW3129" /function="putative enzyme; Not classified" /note="putative enzyme" /codon_start=1 /transl_table=11 /product="putative luciferase-like monooxygenase" /protein_id="NP_417629.1" /db_xref="GI:16131052" /db_xref="ASAP:ABE-0010385" /db_xref="UniProtKB/Swiss-Prot:P0ADV5" /db_xref="EcoGene:EG12792" /db_xref="GeneID:947677" /translation="MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRY WLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLY PGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPG YGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKP YAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGV QQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELL G" repeat_region 3304504..3304532 /note="REP241 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(3304573..3305817) /gene="mtr" /locus_tag="b3161" /gene_synonym="ECK3149; JW3130" /db_xref="EcoGene:EG10617" /db_xref="GeneID:947675" CDS complement(3304573..3305817) /gene="mtr" /locus_tag="b3161" /gene_synonym="ECK3149; JW3130" /function="transport; Transport of small molecules: Amino acids, amines" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0000162 - tryptophan biosynthetic process" /note="tryptophan-specific transport protein" /codon_start=1 /transl_table=11 /product="tryptophan transporter of high affinity" /protein_id="NP_417630.1" /db_xref="GI:16131053" /db_xref="ASAP:ABE-0010387" /db_xref="UniProtKB/Swiss-Prot:P0AAD2" /db_xref="EcoGene:EG10617" /db_xref="GeneID:947675" /translation="MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWS MAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYIL TYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAK VITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYY GKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGV LNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAVGRLKTALLTFAPPV VGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIALIL VFGVGNALVHILSSFNLLPVYQ" gene complement(3305971..3307860) /gene="deaD" /locus_tag="b3162" /gene_synonym="csdA; ECK3150; JW5531; mssB; rhlD" /db_xref="EcoGene:EG10215" /db_xref="GeneID:947674" CDS complement(3305971..3307860) /gene="deaD" /locus_tag="b3162" /gene_synonym="csdA; ECK3150; JW5531; mssB; rhlD" /function="enzyme; RNA synthesis, modification, DNA transcription" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /note="inducible ATP-independent RNA helicase" /codon_start=1 /transl_table=11 /product="ATP-dependent RNA helicase" /protein_id="NP_417631.2" /db_xref="GI:90111550" /db_xref="ASAP:ABE-0010392" /db_xref="UniProtKB/Swiss-Prot:P0A9P6" /db_xref="EcoGene:EG10215" /db_xref="GeneID:947674" /translation="MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR DVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR GVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP DISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALN GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIG RTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQ QQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKR EFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAI ANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPH TGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRR FGGDA" gene complement(3307853..3307933) /gene="yrbN" /locus_tag="b4685" /gene_synonym="ECK4500" /db_xref="EcoGene:EG14490" /db_xref="GeneID:7751619" CDS complement(3307853..3307933) /gene="yrbN" /locus_tag="b4685" /gene_synonym="ECK4500" /codon_start=1 /transl_table=11 /product="uncharacterized protein" /protein_id="YP_002791258.1" /db_xref="GI:226524750" /db_xref="UniProtKB/Swiss-Prot:C1P618" /db_xref="EcoGene:EG14490" /db_xref="GeneID:7751619" /translation="MKIADQFHDELCRLAAINFEAHVLHG" gene complement(3308040..3308924) /gene="nlpI" /locus_tag="b3163" /gene_synonym="ECK3151; JW3132; yhbM" /db_xref="EcoGene:EG12371" /db_xref="GeneID:947673" CDS complement(3308040..3308924) /gene="nlpI" /locus_tag="b3163" /gene_synonym="ECK3151; JW3132; yhbM" /function="putative regulator; Not classified" /codon_start=1 /transl_table=11 /product="lipoprotein involved in osmotic sensitivity and filamentation" /protein_id="NP_417632.1" /db_xref="GI:16131055" /db_xref="ASAP:ABE-0010395" /db_xref="UniProtKB/Swiss-Prot:P0AFB1" /db_xref="EcoGene:EG12371" /db_xref="GeneID:947673" /translation="MKPFLRWCFVATALTLAGCSNTSWRKSEVLAVPLQPTLQQEVIL ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALL ELSLLGQDQDDLAESDQQ" gene complement(3309033..3311168) /gene="pnp" /locus_tag="b3164" /gene_synonym="bfl; ECK3152; JW5851" /db_xref="EcoGene:EG10743" /db_xref="GeneID:947672" CDS complement(3309033..3311168) /gene="pnp" /locus_tag="b3164" /gene_synonym="bfl; ECK3152; JW5851" /EC_number="2.7.7.8" /function="enzyme; RNA synthesis, modification, DNA transcription" /experiment="N-terminus verified by Edman degradation: PMID 9298646" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006401 - RNA catabolic process" /note="polynucleotide phosphorylase; cytidylate kinase activity" /codon_start=1 /transl_table=11 /product="polynucleotide phosphorylase/polyadenylase" /protein_id="NP_417633.4" /db_xref="GI:145698316" /db_xref="ASAP:ABE-0010397" /db_xref="UniProtKB/Swiss-Prot:P05055" /db_xref="EcoGene:EG10743" /db_xref="GeneID:947672" /translation="MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTV VGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPL FPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ YVLNPTQDELKESKLDLVVAGTEAAVLMVESEAQLLSEDQMLGAVVFGHEQQQVVIQN INELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSE TIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVL PRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGM VGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLAL MDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMD IKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIK DVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRV YTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ GRIRLSIKEATEQSQPAAAPEAPAAEQGE" gene 3311225..3311398 /gene="psrO" /locus_tag="b4449" /gene_synonym="ECK3153; JWR0253; p3; psrA15; sraG" /db_xref="EcoGene:EG31162" /db_xref="GeneID:2847685" ncRNA 3311225..3311398 /ncRNA_class="other" /gene="psrO" /locus_tag="b4449" /gene_synonym="ECK3153; JWR0253; p3; psrA15; sraG" /product="novel sRNA, function unknown" /note="identified in a large scale screen" /db_xref="ASAP:ABE-0047269" /db_xref="EcoGene:EG31162" /db_xref="GeneID:2847685" gene complement(3311415..3311684) /gene="rpsO" /locus_tag="b3165" /gene_synonym="ECK3154; JW3134; secC" /db_xref="EcoGene:EG10914" /db_xref="GeneID:947686" CDS complement(3311415..3311684) /gene="rpsO" /locus_tag="b3165" /gene_synonym="ECK3154; JW3134; secC" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S15" /protein_id="NP_417634.1" /db_xref="GI:16131057" /db_xref="ASAP:ABE-0010401" /db_xref="UniProtKB/Swiss-Prot:P0ADZ4" /db_xref="EcoGene:EG10914" /db_xref="GeneID:947686" /translation="MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFA EHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQLIERLGLRR" gene complement(3311833..3312777) /gene="truB" /locus_tag="b3166" /gene_synonym="ECK3155; JW3135; yhbA" /db_xref="EcoGene:EG11177" /db_xref="GeneID:947687" CDS complement(3311833..3312777) /gene="truB" /locus_tag="b3166" /gene_synonym="ECK3155; JW3135; yhbA" /EC_number="4.2.1.70" /function="enzyme; tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /note="tRNA pseudouridine 5S synthase" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine synthase B: tRNA pseudouridine(55) synthase and putative tmRNA pseudouridine(342) synthase" /protein_id="NP_417635.1" /db_xref="GI:16131058" /db_xref="ASAP:ABE-0010404" /db_xref="UniProtKB/Swiss-Prot:P60340" /db_xref="EcoGene:EG11177" /db_xref="GeneID:947687" /translation="MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHT GALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT FSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLF IRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEH LRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP LEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVEYPA" gene complement(3312777..3313178) /gene="rbfA" /locus_tag="b3167" /gene_synonym="ECK3156; JW3136; sdr-43; yhbB" /db_xref="EcoGene:EG11178" /db_xref="GeneID:947685" CDS complement(3312777..3313178) /gene="rbfA" /locus_tag="b3167" /gene_synonym="ECK3156; JW3136; sdr-43; yhbB" /function="factor; Proteins - translation and modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /note="ribosome-binding factor A" /codon_start=1 /transl_table=11 /product="30s ribosome binding factor" /protein_id="NP_417636.1" /db_xref="GI:16131059" /db_xref="ASAP:ABE-0010406" /db_xref="UniProtKB/Swiss-Prot:P0A7G2" /db_xref="EcoGene:EG11178" /db_xref="GeneID:947685" /translation="MAKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMS RDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNS LVEGMRMSNLVTSVVKHDEERRVNPDDSKED" repeat_region 3313252..3313328 /note="REP242 (repetitive extragenic palindromic) element; contains 2 REP sequences" gene complement(3313342..3316014) /gene="infB" /locus_tag="b3168" /gene_synonym="ECK3157; gicD; JW3137; ssyG" /db_xref="EcoGene:EG10505" /db_xref="GeneID:947684" CDS complement(3313342..3316014) /gene="infB" /locus_tag="b3168" /gene_synonym="ECK3157; gicD; JW3137; ssyG" /function="factor; Proteins - translation and modification" /experiment="N-terminus verified by Edman degradation: PMID 3894004" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006412 - translation" /note="protein chain initiation factor IF-2" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-2" /protein_id="NP_417637.1" /db_xref="GI:16131060" /db_xref="ASAP:ABE-0010410" /db_xref="UniProtKB/Swiss-Prot:P0A705" /db_xref="EcoGene:EG10505" /db_xref="GeneID:947684" /translation="MTDVTIKTLAAERQTSVERLVQQFADAGIRKSADDSVSAQEKQT LIDHLNQKNSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERL AAEEQAQREAEEQARREAEESAKREAQQKAEREAAEQAKREAAEQAKREAAEKDKVSN QQDDMTKNAQAEKARREQEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTDN AEPTEDSSDYHVTTSQHARQAEDESDREVEGGRGRGRNAKAARPKKGNKHAESKADRE EARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIK AMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAP VVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAA FTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPD RVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMAS GAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSI PVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMT EGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASN AILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLA EVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVR NGMECGIGVKNYNDVRTGDVIEVFEIIEIQRTIA" gene complement(3316039..3317526) /gene="nusA" /locus_tag="b3169" /gene_synonym="ECK3158; JW3138" /db_xref="EcoGene:EG10665" /db_xref="GeneID:947682" CDS complement(3316039..3317526) /gene="nusA" /locus_tag="b3169" /gene_synonym="ECK3158; JW3138" /function="factor; RNA synthesis, modification, DNA transcription" /experiment="N-terminus verified by Edman degradation: PMID 1847365,6364142,9298646" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent; GO:0006350 - transcription" /note="transcription pausing; L factor" /codon_start=1 /transl_table=11 /product="transcription termination/antitermination L factor" /protein_id="NP_417638.1" /db_xref="GI:16131061" /db_xref="ASAP:ABE-0010413" /db_xref="UniProtKB/Swiss-Prot:P0AFF6" /db_xref="EcoGene:EG10665" /db_xref="GeneID:947682" /translation="MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEID VRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTF DRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEA VILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGE EVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLW DDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGW ELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKEL LEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAA RGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICWFGDEA" gene complement(3317554..3318006) /gene="rimP" /locus_tag="b3170" /gene_synonym="ECK3159; JW5533; yhbC" /db_xref="EcoGene:EG11179" /db_xref="GeneID:947680" CDS complement(3317554..3318006) /gene="rimP" /locus_tag="b3170" /gene_synonym="ECK3159; JW5533; yhbC" /codon_start=1 /transl_table=11 /product="ribosome maturation factor for 30S subunits" /protein_id="NP_417639.6" /db_xref="GI:226524751" /db_xref="ASAP:ABE-0010417" /db_xref="UniProtKB/Swiss-Prot:P0A8A8" /db_xref="EcoGene:EG11179" /db_xref="GeneID:947680" /translation="MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSED GINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLV LRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF" gene complement(3318213..3318289) /gene="metY" /locus_tag="b3171" /gene_synonym="ECK3160; JWR0071" /db_xref="EcoGene:EG30061" /db_xref="GeneID:947678" tRNA complement(3318213..3318289) /gene="metY" /locus_tag="b3171" /gene_synonym="ECK3160; JWR0071" /product="tRNA-Met" /note="anticodon: CAU" /db_xref="ASAP:ABE-0010420" /db_xref="EcoGene:EG30061" /db_xref="GeneID:947678" gene 3318637..3319980 /gene="argG" /locus_tag="b3172" /gene_synonym="Arg6; argE; ECK3161; JW3140" /db_xref="EcoGene:EG10068" /db_xref="GeneID:947590" CDS 3318637..3319980 /gene="argG" /locus_tag="b3172" /gene_synonym="Arg6; argE; ECK3161; JW3140" /EC_number="6.3.4.5" /function="enzyme; Amino acid biosynthesis: Arginine" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006526 - arginine biosynthetic process" /codon_start=1 /transl_table=11 /product="argininosuccinate synthetase" /protein_id="NP_417640.1" /db_xref="GI:16131063" /db_xref="ASAP:ABE-0010428" /db_xref="UniProtKB/Swiss-Prot:P0A6E4" /db_xref="EcoGene:EG10068" /db_xref="GeneID:947590" /translation="MTTILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTAN LGQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNT TPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDT DFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIVN PIMGVKFWDESVKIPAEEVTVRFEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMS DQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQG RWFDSQALMLRDSLQRWVASQITGEVTLELRRGNDYSILNTVSENLTYKPERLTMEKG DSVFSPDDRIGQLTMRNLDITDTREKLFGYAKTGLLSSSAASGVPQVENLENKGQ" gene complement(3319988..3321613) /gene="yhbX" /locus_tag="b3173" /gene_synonym="ECK3162; JW5534" /db_xref="EcoGene:EG12793" /db_xref="GeneID:947711" CDS complement(3319988..3321613) /gene="yhbX" /locus_tag="b3173" /gene_synonym="ECK3162; JW5534" /function="putative enzyme; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /note="putative alkaline phosphatase I" /codon_start=1 /transl_table=11 /product="putative EptAB family phosphoethanolamine transferase, inner membrane protein" /protein_id="NP_417641.4" /db_xref="GI:90111552" /db_xref="ASAP:ABE-0010430" /db_xref="UniProtKB/Swiss-Prot:P42640" /db_xref="EcoGene:EG12793" /db_xref="GeneID:947711" /translation="MTVFNKFARTFKSHWLLYLCVIVFGITNLVASSGAHMVQRLLFF VLTILVVKRISSLPLRLLVAAPFVLLTAADMSISLYSWCTFGTTFNDGFAISVLQSDP DEVVKMLGMYIPYLCAFAFLSLLFLAVIIKYDVSLPTKKVTGILLLIVISGSLFSACQ FAYKDAKNKKAFSPYILASRFATYTPFFNLNYFALAAKEHQRLLSIANTVPYFQLSVR DTGIDTYVLIVGESVRVDNMSLYGYTRSTTPQVEAQRKQIKLFNQAISGAPYTALSVP LSLTADSVLSHDIHNYPDNIINMANQAGFQTFWLSSQSAFRQNGTAVTSIAMRAMETV YVRGFDELLLPHLSQALQQNTQQKKLIVLHLNGSHEPACSAYPQSSAVFQPQDDQDAC YDNSIHYTDSLLGQVFELLKDRRASVMYFADHGLERDPTKKNVYFHGGREASQQAYHV PMFIWYSPVLGDGVDRTTENNIFSTAYNNYLINAWMGVTKPEQPQTLEEVIAHYKGDS RVVDANHDVFDYVMLRKEFTEDKQGNPTPEGQG" gene complement(3322072..3322158) /gene="leuU" /locus_tag="b3174" /gene_synonym="ECK3163; JWR0072" /db_xref="EcoGene:EG30050" /db_xref="GeneID:947505" tRNA complement(3322072..3322158) /gene="leuU" /locus_tag="b3174" /gene_synonym="ECK3163; JWR0072" /product="tRNA-Leu" /note="anticodon: UAG" /db_xref="ASAP:ABE-0010434" /db_xref="EcoGene:EG30050" /db_xref="GeneID:947505" gene complement(3322173..3322505) /gene="secG" /locus_tag="b3175" /gene_synonym="ECK3164; JW3142; prlH" /db_xref="EcoGene:EG12095" /db_xref="GeneID:947720" CDS complement(3322173..3322505) /gene="secG" /locus_tag="b3175" /gene_synonym="ECK3164; JW3142; prlH" /function="transport; Protein, peptide secretion" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="protein export - membrane protein" /codon_start=1 /transl_table=11 /product="preprotein translocase membrane subunit" /protein_id="NP_417642.1" /db_xref="GI:16131065" /db_xref="ASAP:ABE-0010436" /db_xref="UniProtKB/Swiss-Prot:P0AG99" /db_xref="EcoGene:EG12095" /db_xref="GeneID:947720" /translation="MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFG SSGSGNFMTRMTALLATLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPA KPTSDIPN" gene complement(3322733..3324070) /gene="glmM" /locus_tag="b3176" /gene_synonym="ECK3165; JW3143; mrsA; yhbF" /db_xref="EcoGene:EG11553" /db_xref="GeneID:947692" CDS complement(3322733..3324070) /gene="glmM" /locus_tag="b3176" /gene_synonym="ECK3165; JW3143; mrsA; yhbF" /EC_number="5.4.2.10" /function="putative enzyme; Central intermediary metabolism: Miscellaneous glucose metabolism" /GO_component="GO:0005737 - cytoplasm; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0009246 - enterobacterial common antigen biosynthetic process; GO:0006006 - glucose metabolic process; GO:0009243 - O antigen biosynthetic process; GO:0009252 - peptidoglycan biosynthetic process" /codon_start=1 /transl_table=11 /product="phosphoglucosamine mutase" /protein_id="NP_417643.1" /db_xref="GI:16131066" /db_xref="ASAP:ABE-0010439" /db_xref="UniProtKB/Swiss-Prot:P31120" /db_xref="EcoGene:EG11553" /db_xref="GeneID:947692" /translation="MSNRKYFGTDGIRGRVGDAPITPDFVLKLGWAAGKVLARHGSRK IIIGKDTRISGYMLESALEAGLAAAGLSALFTGPMPTPAVAYLTRTFRAEAGIVISAS HNPFYDNGIKFFSIDGTKLPDAVEEAIEAEMEKEISCVDSAELGKASRIVDAAGRYIE FCKATFPNELSLSELKIVVDCANGATYHIAPNVLRELGANVIAIGCEPNGVNINAEVG ATDVRALQARVLAEKADLGIAFDGDGDRVIMVDHEGNKVDGDQIMYIIAREGLRQGQL RGGAVGTLMSNMGLELALKQLGIPFARAKVGDRYVLEKMQEKGWRIGAENSGHVILLD KTTTGDGIVAGLQVLAAMARNHMSLHDLCSGMKMFPQILVNVRYTAGSGDPLEHESVK AVTAEVEAALGNRGRVLLRKSGTEPLIRVMVEGEDEAQVTEFAHRIADAVKAV" gene complement(3324063..3324911) /gene="folP" /locus_tag="b3177" /gene_synonym="dhpS; ECK3166; JW3144" /db_xref="EcoGene:EG50011" /db_xref="GeneID:947691" CDS complement(3324063..3324911) /gene="folP" /locus_tag="b3177" /gene_synonym="dhpS; ECK3166; JW3144" /EC_number="2.5.1.15" /function="enzyme; Biosynthesis of cofactors, carriers: Folic acid" /experiment="N-terminus verified by Edman degradation: PMID 1657875" /GO_process="GO:0046656 - folic acid biosynthetic process" /codon_start=1 /transl_table=11 /product="7,8-dihydropteroate synthase" /protein_id="NP_417644.4" /db_xref="GI:90111553" /db_xref="ASAP:ABE-0010441" /db_xref="UniProtKB/Swiss-Prot:P0AC13" /db_xref="EcoGene:EG50011" /db_xref="GeneID:947691" /translation="MKLFAQGTSLDLSHPHVMGILNVTPDSFSDGGTHNSLIDAVKHA NLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISVDTSKPEV IRESAKVGAHIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAE VNRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPLLVGM SRKSMIGQLLNVGPSERLSGSLACAVIAAMQGAHIIRVHDVKETVEAMRVVEATLSAK ENKRYE" gene complement(3325001..3326935) /gene="ftsH" /locus_tag="b3178" /gene_synonym="ECK3167; hflB; JW3145; mrsC; std; tolZ" /db_xref="EcoGene:EG11506" /db_xref="GeneID:947690" CDS complement(3325001..3326935) /gene="ftsH" /locus_tag="b3178" /gene_synonym="ECK3167; hflB; JW3145; mrsC; std; tolZ" /EC_number="3.4.24.-" /function="enzyme; Degradation of proteins, peptides, glyco" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="protease, ATP-dependent zinc-metallo" /protein_id="NP_417645.1" /db_xref="GI:16131068" /db_xref="ASAP:ABE-0010444" /db_xref="UniProtKB/Swiss-Prot:P0AAI3" /db_xref="EcoGene:EG11506" /db_xref="GeneID:947690" /translation="MAKNLILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNND QVREARINGREINVTKKDSNRYTTYIPVQDPKLLDNLLTKNVKVVGEPPEEPSLLASI FISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEA KEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN QMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVH MRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI MMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLP EGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWG FSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTD NMDILHAMKDALMKYETIDAPQIDDLMARRDVRPPAGWEEPGASNNSGDNGSPKAPRP VDEPRTPNPGNTMSEQLGDK" gene complement(3327035..3327664) /gene="rlmE" /locus_tag="b3179" /gene_synonym="ECK3168; ftsJ; JW3146; mrsF; rrmJ" /db_xref="EcoGene:EG11507" /db_xref="GeneID:947689" CDS complement(3327035..3327664) /gene="rlmE" /locus_tag="b3179" /gene_synonym="ECK3168; ftsJ; JW3146; mrsF; rrmJ" /EC_number="2.1.1.-" /function="enzyme; rRNA modification; phenotype; Cell division" /codon_start=1 /transl_table=11 /product="23S rRNA U2552 2'-O-ribose methyltransferase, SAM-dependent" /protein_id="NP_417646.1" /db_xref="GI:16131069" /db_xref="ASAP:ABE-0010447" /db_xref="UniProtKB/Swiss-Prot:P0C0R7" /db_xref="EcoGene:EG11507" /db_xref="GeneID:947689" /translation="MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQ SDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGS FVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKP" gene 3327790..3328083 /gene="yhbY" /locus_tag="b3180" /gene_synonym="ECK3169; JW3147" /db_xref="EcoGene:EG12794" /db_xref="GeneID:947688" CDS 3327790..3328083 /gene="yhbY" /locus_tag="b3180" /gene_synonym="ECK3169; JW3147" /codon_start=1 /transl_table=11 /product="RNA binding protein associated with pre-50S ribosomal subunits" /protein_id="NP_417647.1" /db_xref="GI:16131070" /db_xref="ASAP:ABE-0010452" /db_xref="UniProtKB/Swiss-Prot:P0AGK4" /db_xref="EcoGene:EG12794" /db_xref="GeneID:947688" /translation="MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHH ELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPTKERKISLPR" gene complement(3328239..3328715) /gene="greA" /locus_tag="b3181" /gene_synonym="ECK3170; JW3148" /db_xref="EcoGene:EG10415" /db_xref="GeneID:947696" CDS complement(3328239..3328715) /gene="greA" /locus_tag="b3181" /gene_synonym="ECK3170; JW3148" /function="regulator; Proteins - translation and modification" /experiment="N-terminus verified by Edman degradation: PMID 1384037" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent; GO:0006350 - transcription" /note="transcription elongation factor: cleaves 3' nucleotide of paused mRNA" /codon_start=1 /transl_table=11 /product="transcript cleavage factor" /protein_id="NP_417648.4" /db_xref="GI:90111554" /db_xref="ASAP:ABE-0010454" /db_xref="UniProtKB/Swiss-Prot:P0A6W5" /db_xref="EcoGene:EG10415" /db_xref="GeneID:947696" /translation="MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKE NAEYHAAREQQGFCEGRIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEE QTYRIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL" gene 3328963..3330396 /gene="dacB" /locus_tag="b3182" /gene_synonym="ECK3171; JW3149" /db_xref="EcoGene:EG10202" /db_xref="GeneID:947693" CDS 3328963..3330396 /gene="dacB" /locus_tag="b3182" /gene_synonym="ECK3171; JW3149" /EC_number="3.4.16.4" /function="enzyme; Murein sacculus, peptidoglycan" /GO_component="GO:0009274 - peptidoglycan-based cell wall; GO:0042597 - periplasmic space" /GO_process="GO:0009252 - peptidoglycan biosynthetic process; GO:0042493 - response to drug" /note="D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin-binding protein 4" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine carboxypeptidase" /protein_id="NP_417649.1" /db_xref="GI:16131072" /db_xref="ASAP:ABE-0010458" /db_xref="UniProtKB/Swiss-Prot:P24228" /db_xref="EcoGene:EG10202" /db_xref="GeneID:947693" /translation="MRFSRFIIGLTSCIAFSVQAANVDEYITQLPAGANLALMVQKVG ASAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLV ARFGADPTLKRQDIRNMVATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCF SAPPAAAIVDRNCFSVSLYSAPKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCE LDVVPGDLNRFTLTGCLPQRSEPLPLAFAVQDGASYAGAILKDELKQAGITWSGTLLR QTQVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSD AVRQILRQQAGVDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPL AGYDGSLQYRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAV EPADQRNRRIPLVRFESRLYKDIYQNN" repeat_region 3330460..3330557 /note="RIP243 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene complement(3330582..3331754) /gene="obgE" /locus_tag="b3183" /gene_synonym="cgtA; ECK3172; JW3150; obg; yhbZ" /db_xref="EcoGene:EG12795" /db_xref="GeneID:947694" CDS complement(3330582..3331754) /gene="obgE" /locus_tag="b3183" /gene_synonym="cgtA; ECK3172; JW3150; obg; yhbZ" /function="putative factor; Not classified" /note="putative GTP-binding factor" /codon_start=1 /transl_table=11 /product="GTPase involved in cell partioning and DNA repair" /protein_id="NP_417650.1" /db_xref="GI:16131073" /db_xref="ASAP:ABE-0010462" /db_xref="UniProtKB/Swiss-Prot:P42641" /db_xref="EcoGene:EG12795" /db_xref="GeneID:947694" /translation="MKFVDEASILVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGD VWMEADENLNTLIDYRFEKSFRAERGQNGASRDCTGKRGKDVTIKVPVGTRVIDQGTG ETMGDMTKHGQRLLVAKGGWHGLGNTRFKSSVNRTPRQKTNGTPGDKRELLLELMLLA DVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNEKSFVVADIPGLI EGAAEGAGLGIRFLKHLERCRVLLHLIDIDPIDGTDPVENARIIISELEKYSQDLATK PRWLVFNKIDLLDKVEAEEKAKAIAEALGWEDKYYLISAASGLGVKDLCWDVMTFIIE NPVVQAEEAKQPEKVEFMWDDYHRQQLEEIAEEDDEDWDDDWDEDDEEGVEFIYKR" gene complement(3331770..3332735) /gene="yhbE" /locus_tag="b3184" /gene_synonym="ECK3173; JW3151" /db_xref="EcoGene:EG11499" /db_xref="GeneID:947699" CDS complement(3331770..3332735) /gene="yhbE" /locus_tag="b3184" /gene_synonym="ECK3173; JW3151" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="EamA family inner membrane putative transporter" /protein_id="NP_417651.1" /db_xref="GI:16131074" /db_xref="ASAP:ABE-0010464" /db_xref="UniProtKB/Swiss-Prot:P0AA73" /db_xref="EcoGene:EG11499" /db_xref="GeneID:947699" /translation="MKQQAGIGILLALTTAICWGALPIAMKQVLEVMEPPTIVFYRFL MASIGLGAILAVKKRLPPLRVFRKPRWLILLAVATAGLFGNFILFSSSLQYLSPTASQ VIGQLSPVGMMVASVFILKEKMRSTQVVGALMLLSGLVMFFNTSLVEIFTKLTDYTWG VIFGVGAATVWVSYGVAQKVLLRRLASPQILFLLYTLCTIALFPLAKPGVIAQLSHWQ LACLIFCGLNTLVGYGALAEAMARWQAAQVSAIITLTPLFTLFFSDLLSLAWPDFFAR PMLNLLGYLGAFVVVAGAMYSAIGHRIWGGLRKHTTVVSQPRAGE" gene complement(3332862..3333119) /gene="rpmA" /locus_tag="b3185" /gene_synonym="ECK3174; JW3152; rpz" /db_xref="EcoGene:EG50002" /db_xref="GeneID:945190" CDS complement(3332862..3333119) /gene="rpmA" /locus_tag="b3185" /gene_synonym="ECK3174; JW3152; rpz" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L27" /protein_id="NP_417652.1" /db_xref="GI:16131075" /db_xref="ASAP:ABE-0010468" /db_xref="UniProtKB/Swiss-Prot:P0A7L8" /db_xref="EcoGene:EG50002" /db_xref="GeneID:945190" /translation="MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK FHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE" gene complement(3333140..3333451) /gene="rplU" /locus_tag="b3186" /gene_synonym="ECK3175; JW3153" /db_xref="EcoGene:EG50001" /db_xref="GeneID:949057" CDS complement(3333140..3333451) /gene="rplU" /locus_tag="b3186" /gene_synonym="ECK3175; JW3153" /function="structural component; Ribosomal proteins - synthesis, modification" /experiment="N-terminus verified by Edman degradation: PMID 387076,8740179" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L21" /protein_id="NP_417653.1" /db_xref="GI:16131076" /db_xref="ASAP:ABE-0010470" /db_xref="UniProtKB/Swiss-Prot:P0AG48" /db_xref="EcoGene:EG50001" /db_xref="GeneID:949057" /translation="MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANG EEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGIS A" gene 3333710..3334681 /gene="ispB" /locus_tag="b3187" /gene_synonym="cel; ECK3176; JW3154; yhbD" /db_xref="EcoGene:EG10017" /db_xref="GeneID:947364" CDS 3333710..3334681 /gene="ispB" /locus_tag="b3187" /gene_synonym="cel; ECK3176; JW3154; yhbD" /EC_number="2.5.1.-" /function="enzyme; Biosynthesis of cofactors, carriers: Menaquinone, ubiquinone" /codon_start=1 /transl_table=11 /product="octaprenyl diphosphate synthase" /protein_id="NP_417654.1" /db_xref="GI:16131077" /db_xref="ASAP:ABE-0010474" /db_xref="UniProtKB/Swiss-Prot:P0AD57" /db_xref="EcoGene:EG10017" /db_xref="GeneID:947364" /translation="MNLEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIVSGGG KRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAA FGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITE ENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNA DGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQGNGRHLLEPVLEAMN ACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIGLAHIAVQRDR" gene 3334909..3335187 /gene="sfsB" /locus_tag="b3188" /gene_synonym="ECK3177; JW3155; nlp; sfs7" /db_xref="EcoGene:EG10656" /db_xref="GeneID:947960" CDS 3334909..3335187 /gene="sfsB" /locus_tag="b3188" /gene_synonym="ECK3177; JW3155; nlp; sfs7" /function="regulator; Degradation of small molecules: Carbon compounds" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0016052 - carbohydrate catabolic process; GO:0006350 - transcription" /note="regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu" /codon_start=1 /transl_table=11 /product="malPQ operon transcriptional activator" /protein_id="NP_417655.1" /db_xref="GI:16131078" /db_xref="ASAP:ABE-0010477" /db_xref="UniProtKB/Swiss-Prot:P0ACH1" /db_xref="EcoGene:EG10656" /db_xref="GeneID:947960" /translation="MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSR PWPKGEMIIAKALGTDPWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK" gene complement(3335235..3336494) /gene="murA" /locus_tag="b3189" /gene_synonym="ECK3178; JW3156; mrbA; murZ" /db_xref="EcoGene:EG11358" /db_xref="GeneID:947703" CDS complement(3335235..3336494) /gene="murA" /locus_tag="b3189" /gene_synonym="ECK3178; JW3156; mrbA; murZ" /EC_number="2.5.1.7" /function="enzyme; Murein sacculus, peptidoglycan" /experiment="N-terminus verified by Edman degradation: PMID 1512209" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /note="first step in murein biosynthesis;UDP-N-glucosamine 1-carboxyvinyltransferase" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine 1-carboxyvinyltransferase" /protein_id="NP_417656.1" /db_xref="GI:16131079" /db_xref="ASAP:ABE-0010479" /db_xref="UniProtKB/Swiss-Prot:P0A749" /db_xref="EcoGene:EG11358" /db_xref="GeneID:947703" /translation="MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNV PKLKDVDTSMKLLSQLGAKVERNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVA RFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVDGRLKGAHIVMDK VSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGV ERLGGGVYRVLPDRIETGTFLVAAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVG EDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMH VPELSRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRI YHIDRGYERIEDKLRALGANIERVKGE" gene complement(3336549..3336803) /gene="ibaG" /locus_tag="b3190" /gene_synonym="ECK3179; JW3157; yrbA" /db_xref="EcoGene:EG12796" /db_xref="GeneID:947958" CDS complement(3336549..3336803) /gene="ibaG" /locus_tag="b3190" /gene_synonym="ECK3179; JW3157; yrbA" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent" /codon_start=1 /transl_table=11 /product="acid stress protein; putative BolA family transcriptional regulator" /protein_id="NP_417657.2" /db_xref="GI:90111555" /db_xref="ASAP:ABE-0010481" /db_xref="UniProtKB/Swiss-Prot:P0A9W6" /db_xref="EcoGene:EG12796" /db_xref="GeneID:947958" /translation="MENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVK KQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGF" repeat_region 3336919..3336952 /note="REP244 (repetitive extragenic palindromic) element; contains 1 REP sequences" gene complement(3336963..3337256) /gene="mlaB" /locus_tag="b3191" /gene_synonym="ECK3180; JW5535; yrbB" /db_xref="EcoGene:EG12797" /db_xref="GeneID:947954" CDS complement(3336963..3337256) /gene="mlaB" /locus_tag="b3191" /gene_synonym="ECK3180; JW5535; yrbB" /function="transport; Transport of small molecules: phospholipids" /codon_start=1 /transl_table=11 /product="ABC transporter maintaining OM lipid asymmetry, cytoplasmic STAS component" /protein_id="NP_417658.4" /db_xref="GI:90111556" /db_xref="ASAP:ABE-0010487" /db_xref="UniProtKB/Swiss-Prot:P64602" /db_xref="EcoGene:EG12797" /db_xref="GeneID:947954" /translation="MSESLSWMQTGDTLALSGELDQDVLLPLWEMREEAVKGITCIDL SRVSRVDTGGLALLLHLIDLAKKQGNNVTLQGVNDKVYTLAKLYNLPADVLPR" gene complement(3337256..3337891) /gene="mlaC" /locus_tag="b3192" /gene_synonym="ECK3181; JW3159; yrbC" /db_xref="EcoGene:EG12798" /db_xref="GeneID:947710" CDS complement(3337256..3337891) /gene="mlaC" /locus_tag="b3192" /gene_synonym="ECK3181; JW3159; yrbC" /function="transport; Transport of small molecules: phospholipids" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="ABC transporter maintaining OM lipid asymmetry, periplasmic binding protein" /protein_id="NP_417659.1" /db_xref="GI:16131082" /db_xref="ASAP:ABE-0010489" /db_xref="UniProtKB/Swiss-Prot:P0ADV7" /db_xref="EcoGene:EG12798" /db_xref="GeneID:947710" /translation="MFKRLMMVALLVIAPLSAATAADQTNPYKLMDEAAQKTFDRLKN EQPQIRANPDYLRTIVDQELLPYVQVKYAGALVLGQYYKSATPAQREAYFAAFREYLK QAYGQALAMYHGQTYQIAPEQPLGDKTIVPIRVTIIDPNGRPPVRLDFQWRKNSQTGN WQAYDMIAEGVSMITTKQNEWGTLLRTKGIDGLTAQLKSISQQKITLEEKK" gene complement(3337910..3338461) /gene="mlaD" /locus_tag="b3193" /gene_synonym="ECK3182; JW3160; vpsC; yrbD" /db_xref="EcoGene:EG12799" /db_xref="GeneID:947712" CDS complement(3337910..3338461) /gene="mlaD" /locus_tag="b3193" /gene_synonym="ECK3182; JW3160; vpsC; yrbD" /function="transport; Transport of small molecules: phospholipids" /codon_start=1 /transl_table=11 /product="OM lipid asymmetry maintenance protein; membrane-anchored ABC family periplasmic binding protein" /protein_id="NP_417660.1" /db_xref="GI:16131083" /db_xref="ASAP:ABE-0010493" /db_xref="UniProtKB/Swiss-Prot:P64604" /db_xref="EcoGene:EG12799" /db_xref="GeneID:947712" /translation="MQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYA TFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIR TSGLLGEQYLALNVGFEDPELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNK NSGDAPAAAPGNNETTEPVGTTK" gene complement(3338466..3339248) /gene="mlaE" /locus_tag="b3194" /gene_synonym="ECK3183; JW3161; vpsB; yrbE" /db_xref="EcoGene:EG12800" /db_xref="GeneID:947732" CDS complement(3338466..3339248) /gene="mlaE" /locus_tag="b3194" /gene_synonym="ECK3183; JW3161; vpsB; yrbE" /function="transport; Transport of small molecules: phospholipids" /codon_start=1 /transl_table=11 /product="ABC transporter maintaining OM lipid asymmetry, inner membrane permease protein" /protein_id="NP_417661.1" /db_xref="GI:16131084" /db_xref="ASAP:ABE-0010495" /db_xref="UniProtKB/Swiss-Prot:P64606" /db_xref="EcoGene:EG12800" /db_xref="GeneID:947732" /translation="MLLNALASLGHKGIKTLRTFGRAGLMLFNALVGKPEFRKHAPLL VRQLYNVGVLSMLIIVVSGVFIGMVLGLQGYLVLTTYSAETSLGMLVALSLLRELGPV VAALLFAGRAGSALTAEIGLMRATEQLSSMEMMAVDPLRRVISPRFWAGVISLPLLTV IFVAVGIWGGSLVGVSWKGIDSGFFWSAMQNAVDWRMDLVNCLIKSVVFAITVTWISL FNGYDAIPTSAGISRATTRTVVHSSLAVLGLDFVLTALMFGN" gene complement(3339256..3340065) /gene="mlaF" /locus_tag="b3195" /gene_synonym="ECK3184; JW3162; vpsA; yrbF" /db_xref="EcoGene:EG12801" /db_xref="GeneID:947729" CDS complement(3339256..3340065) /gene="mlaF" /locus_tag="b3195" /gene_synonym="ECK3184; JW3162; vpsA; yrbF" /function="transport; Transport of small molecules: phospholipids" /GO_component="GO:0005737 - cytoplasm" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="ABC transporter maintaining OM lipid asymmetry, ATP-binding protein" /protein_id="NP_417662.1" /db_xref="GI:16131085" /db_xref="ASAP:ABE-0010498" /db_xref="UniProtKB/Swiss-Prot:P63386" /db_xref="EcoGene:EG12801" /db_xref="GeneID:947729" /translation="MEQSVANLVDMRDVSFTRGNRCIFDNISLTVPRGKITAIMGPSG IGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNV FDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAWIL ADKKIVAHGSAQALQANPDPRVRQFLDGIADGPVPFRYPAGDYHADLLPGS" gene 3340275..3341252 /gene="yrbG" /locus_tag="b3196" /gene_synonym="ECK3185; JW3163" /db_xref="EcoGene:EG12802" /db_xref="GeneID:947730" CDS 3340275..3341252 /gene="yrbG" /locus_tag="b3196" /gene_synonym="ECK3185; JW3163" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_function="GO:0005432 - calcium:sodium antiporter activity" /codon_start=1 /transl_table=11 /product="putative calcium/sodium:proton antiporter" /protein_id="NP_417663.1" /db_xref="GI:16131086" /db_xref="ASAP:ABE-0010502" /db_xref="UniProtKB/Swiss-Prot:P45394" /db_xref="EcoGene:EG12802" /db_xref="GeneID:947730" /translation="MLLATALLIVGLLLVVYSADRLVFAASILCRTFGIPPLIIGMTV VSIGTSLPEVIVSLAASLHEQRDLAVGTALGSNIINILLILGLAALVRPFTVHSDVLR RELPLMLLVSVVAGSVLYDGQLSRSDGIFLLFLAVLWLLFIVKLARQAERQGTDSLTR EQLAELPRDGGLPVAFLWLGIALIIMPVATRMVVDNATVLANYFAISELTMGLTAIAI GTSLPELATAIAGVRKGENDIAVGNIIGANIFNIVIVLGLPALITPGEIDPLAYSRDY SVMLLVSIIFALLCWRRSPQPGRGVGVLLTGGFIVWLAMLYWLSPILVE" gene 3341266..3342252 /gene="kdsD" /locus_tag="b3197" /gene_synonym="ECK3186; JW3164; yrbH" /db_xref="EcoGene:EG12803" /db_xref="GeneID:947734" CDS 3341266..3342252 /gene="kdsD" /locus_tag="b3197" /gene_synonym="ECK3186; JW3164; yrbH" /EC_number="5.3.1.13" /function="putative enzyme; Not classified" /note="putative isomerase" /codon_start=1 /transl_table=11 /product="D-arabinose 5-phosphate isomerase" /protein_id="NP_417664.1" /db_xref="GI:16131087" /db_xref="ASAP:ABE-0010504" /db_xref="UniProtKB/Swiss-Prot:P45395" /db_xref="EcoGene:EG12803" /db_xref="GeneID:947734" /translation="MSHVELQPGFDFQQAGKEVLAIERECLAELDQYINQNFTLACEK MFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIA ISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAP TSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPH VKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDGDLRRVFDMGVDVRQLSIADV MTPGGIRVRPGILAVEALNLMQSRHITSVMVADGDHLLGVLHMHDLLRAGVV" gene 3342273..3342839 /gene="kdsC" /locus_tag="b3198" /gene_synonym="ECK3187; JW3165; yrbI; yrbJ" /db_xref="EcoGene:EG12804" /db_xref="GeneID:947717" CDS 3342273..3342839 /gene="kdsC" /locus_tag="b3198" /gene_synonym="ECK3187; JW3165; yrbI; yrbJ" /EC_number="3.1.3.45" /codon_start=1 /transl_table=11 /product="3-deoxy-D-manno-octulosonate 8-phosphate phosphatase" /protein_id="NP_417665.1" /db_xref="GI:16131088" /db_xref="ASAP:ABE-0010506" /db_xref="UniProtKB/Swiss-Prot:P0ABZ4" /db_xref="EcoGene:EG12804" /db_xref="GeneID:947717" /translation="MSKAGASLATCYGPVSADVIAKAENIRLLILDVDGVLSDGLIYM GNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNK LIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIA GGRGAVREVCDLLLLAQGKLDEAKGQSI" gene 3342836..3343411 /gene="lptC" /locus_tag="b3199" /gene_synonym="ECK3188; JW3166; yrbK" /db_xref="EcoGene:EG12806" /db_xref="GeneID:947722" CDS 3342836..3343411 /gene="lptC" /locus_tag="b3199" /gene_synonym="ECK3188; JW3166; yrbK" /codon_start=1 /transl_table=11 /product="periplasmic membrane-anchored LPS-binding protein; LPS export protein" /protein_id="NP_417666.1" /db_xref="GI:16131089" /db_xref="ASAP:ABE-0010508" /db_xref="UniProtKB/Swiss-Prot:P0ADV9" /db_xref="EcoGene:EG12806" /db_xref="GeneID:947722" /translation="MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKS EHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAK LTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSG LKMRGNLRSKNAELIEKVRTSYEIQNKQTQP" gene 3343380..3343937 /gene="lptA" /locus_tag="b3200" /gene_synonym="ECK3189; JW3167; yhbN" /db_xref="EcoGene:EG12618" /db_xref="GeneID:947920" CDS 3343380..3343937 /gene="lptA" /locus_tag="b3200" /gene_synonym="ECK3189; JW3167; yhbN" /function="lipopolysaccharide biosynthesis" /codon_start=1 /transl_table=11 /product="lipopolysaccharide export ABC transporter periplasmic binding protein; Lipid A binding protein; LPS export and assembly protein" /protein_id="NP_417667.1" /db_xref="GI:16131090" /db_xref="ASAP:ABE-0010510" /db_xref="UniProtKB/Swiss-Prot:P0ADV1" /db_xref="EcoGene:EG12618" /db_xref="GeneID:947920" /translation="MKFKTNKLSLNLVLASSLLAASIPAFAVTGDTDQPIHIESDQQS LDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNG KPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRV TTVLVPSQLQDKNNKGQTPAQKKGN" gene 3343944..3344669 /gene="lptB" /locus_tag="b3201" /gene_synonym="ECK3190; JW3168; yhbG" /db_xref="EcoGene:EG11680" /db_xref="GeneID:947725" CDS 3343944..3344669 /gene="lptB" /locus_tag="b3201" /gene_synonym="ECK3190; JW3168; yhbG" /function="putative transport; Not classified" /GO_component="GO:0005737 - cytoplasm" /note="putative ATP-binding component of a transport system" /codon_start=1 /transl_table=11 /product="lipopolysaccharide export ABC transporter ATPase" /protein_id="NP_417668.1" /db_xref="GI:16131091" /db_xref="ASAP:ABE-0010512" /db_xref="UniProtKB/Swiss-Prot:P0A9V1" /db_xref="EcoGene:EG11680" /db_xref="GeneID:947725" /translation="MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTT TFYMVVGIVPRDAGNIIIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAV LQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH GTPTEILQDEHVKRVYLGEDFRL" gene 3344717..3346150 /gene="rpoN" /locus_tag="b3202" /gene_synonym="ECK3191; glnF; JW3169; ntrA" /db_xref="EcoGene:EG10898" /db_xref="GeneID:947714" CDS 3344717..3346150 /gene="rpoN" /locus_tag="b3202" /gene_synonym="ECK3191; glnF; JW3169; ntrA" /function="regulator; Global regulatory functions" /GO_process="GO:0006807 - nitrogen compound metabolic process; GO:0006350 - transcription" /note="RNA polymerase, sigma(54 or 60) factor; nitrogen and fermentation regulation" /codon_start=1 /transl_table=11 /product="RNA polymerase, sigma 54 (sigma N) factor" /protein_id="NP_417669.1" /db_xref="GI:16131092" /db_xref="ASAP:ABE-0010514" /db_xref="UniProtKB/Swiss-Prot:P24255" /db_xref="EcoGene:EG10898" /db_xref="GeneID:947714" /translation="MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESN PLLEQIDTHEEIDTRETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSG DYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVPLED ILESIGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARL IISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDV LVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLE SRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHS PRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQG IMVARRTVAKYRESLSIPPSNQRKQLV" gene 3346173..3346460 /gene="hpf" /locus_tag="b3203" /gene_synonym="ECK3192; JW3170; yhbH" /db_xref="EcoGene:EG11681" /db_xref="GeneID:947718" CDS 3346173..3346460 /gene="hpf" /locus_tag="b3203" /gene_synonym="ECK3192; JW3170; yhbH" /function="putative regulator; Global regulatory functions" /experiment="N-terminus verified by Edman degradation: PMID 11168583" /GO_process="GO:0006350 - transcription" /note="probable sigma-54 modulation protein" /codon_start=1 /transl_table=11 /product="ribosome hibernation promoting factor HPF; stabilizes 100S dimers" /protein_id="NP_417670.1" /db_xref="GI:16131093" /db_xref="ASAP:ABE-0010516" /db_xref="UniProtKB/Swiss-Prot:P0AFX0" /db_xref="EcoGene:EG11681" /db_xref="GeneID:947718" /translation="MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE KVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH" gene 3346578..3347069 /gene="ptsN" /locus_tag="b3204" /gene_synonym="ECK3193; JW3171; rpoP; yhbI" /db_xref="EcoGene:EG11682" /db_xref="GeneID:947721" CDS 3346578..3347069 /gene="ptsN" /locus_tag="b3204" /gene_synonym="ECK3193; JW3171; rpoP; yhbI" /EC_number="2.7.1.69" /function="enzyme; Transport of small molecules: Amino acids, amines" /note="phosphotransferase system enzyme IIA, regulates N metabolism" /codon_start=1 /transl_table=11 /product="sugar-specific enzyme IIA component of PTS" /protein_id="NP_417671.1" /db_xref="GI:16131094" /db_xref="ASAP:ABE-0010520" /db_xref="UniProtKB/Swiss-Prot:P69829" /db_xref="EcoGene:EG11682" /db_xref="GeneID:947721" /translation="MTNNDTTLQLSSVLNRECTRSRVHCQSKKRALEIISELAAKQLS LPPQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAIDNQ PVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQIITDTEGTP DEA" gene 3347115..3347969 /gene="yhbJ" /locus_tag="b3205" /gene_synonym="ECK3194; JW3172; rapZ" /db_xref="EcoGene:EG12146" /db_xref="GeneID:947727" CDS 3347115..3347969 /gene="yhbJ" /locus_tag="b3205" /gene_synonym="ECK3194; JW3172; rapZ" /codon_start=1 /transl_table=11 /product="adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase" /protein_id="NP_417672.1" /db_xref="GI:16131095" /db_xref="ASAP:ABE-0010522" /db_xref="UniProtKB/Swiss-Prot:P0A894" /db_xref="EcoGene:EG12146" /db_xref="GeneID:947727" /translation="MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTL ADREISAAVSIDVRNMPESPEIFEQAMSNLPDAFSPQLLFLDADRNTLIRRYSDTRRL HPLSSKNLSLESAIDKESDLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKREREL TMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNF IYQTRSYLELWLPMLETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRH RTLEKRKP" gene 3347966..3348238 /gene="npr" /locus_tag="b3206" /gene_synonym="ECK3195; JW3173; ptsO; rpoR; yhbK" /db_xref="EcoGene:EG12147" /db_xref="GeneID:947914" CDS 3347966..3348238 /gene="npr" /locus_tag="b3206" /gene_synonym="ECK3195; JW3173; ptsO; rpoR; yhbK" /function="transport; Transport of small molecules: Other" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006464 - protein modification process" /note="phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr" /codon_start=1 /transl_table=11 /product="phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr)" /protein_id="NP_417673.1" /db_xref="GI:16131096" /db_xref="ASAP:ABE-0010524" /db_xref="UniProtKB/Swiss-Prot:P0A9N0" /db_xref="EcoGene:EG12147" /db_xref="GeneID:947914" /translation="MTVKQTVEITNKLGMHARPAMKLFELMQGFDAEVLLRNDEGTEA EANSVIALLMLDSAKGRQIEVEATGPQEEEALAAVIALFNSGFDED" gene 3348452..3349084 /gene="yrbL" /locus_tag="b3207" /gene_synonym="ECK3196; JW3174" /db_xref="EcoGene:EG12807" /db_xref="GeneID:947910" CDS 3348452..3349084 /gene="yrbL" /locus_tag="b3207" /gene_synonym="ECK3196; JW3174" /codon_start=1 /transl_table=11 /product="Mg(2+)-starvation-stimulated protein" /protein_id="NP_417674.1" /db_xref="GI:16131097" /db_xref="ASAP:ABE-0010528" /db_xref="UniProtKB/Swiss-Prot:P64610" /db_xref="EcoGene:EG12807" /db_xref="GeneID:947910" /translation="MIRLSEQSPLGTGRHRKCYAHPEDAQRCIKIVYHRGDGGDKEIR RELKYYAHLGRRLKDWSGIPRYHGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQCR YEEDIAQLRQLLKQLKRYLQDNRIVTMSLKPQNILCHRISESEVIPVVCDNIGESTLI PLATWSKWCCLRKQERLWKRFIAQPALAIALQKDLQPRESKTLALTSREA" gene complement(3349081..3349809) /gene="mtgA" /locus_tag="b3208" /gene_synonym="ECK3197; JW3175; mgt; yrbM" /db_xref="EcoGene:EG12808" /db_xref="GeneID:947728" CDS complement(3349081..3349809) /gene="mtgA" /locus_tag="b3208" /gene_synonym="ECK3197; JW3175; mgt; yrbM" /EC_number="2.4.2.-" /function="putative enzyme; Not classified" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /note="putative peptidoglycan enzyme" /codon_start=1 /transl_table=11 /product="biosynthetic peptidoglycan transglycosylase" /protein_id="NP_417675.1" /db_xref="GI:16131098" /db_xref="ASAP:ABE-0010530" /db_xref="UniProtKB/Swiss-Prot:P46022" /db_xref="EcoGene:EG12808" /db_xref="GeneID:947728" /translation="MSKSRLTVFSFVRRFLLRLMVVLAVFWGGGIALFSVAPVPFSAV MVERQVSAWLHGNFRYVAHSDWVSMDQISPWMGLAVIAAEDQKFPEHWGFDVASIEKA LAHNERNENRIRGASTISQQTAKNLFLWDGRSWVRKGLEAGLTLGIETVWSKKRILTV YLNIAEFGDGVFGVEAAAQRYFHKPASKLTRSEAALLAAVLPNPLRFKVSSPSGYVRS RQAWILRQMYQLGGEPFMQQHQLD" gene complement(3349806..3350459) /gene="elbB" /locus_tag="b3209" /gene_synonym="ECK3198; elb2; JW3176; yhbL; yzzB" /db_xref="EcoGene:EG11383" /db_xref="GeneID:947903" CDS complement(3349806..3350459) /gene="elbB" /locus_tag="b3209" /gene_synonym="ECK3198; elb2; JW3176; yhbL; yzzB" /function="putative factor; Not classified" /experiment="N-terminus verified by Edman degradation: PMID 1575737" /note="sigma cross-reacting protein 27A (SCRP-27A)" /codon_start=1 /transl_table=11 /product="isoprenoid biosynthesis protein with amidotransferase-like domain" /protein_id="NP_417676.2" /db_xref="GI:90111557" /db_xref="ASAP:ABE-0010532" /db_xref="UniProtKB/Swiss-Prot:P0ABU5" /db_xref="EcoGene:EG11383" /db_xref="GeneID:947903" /translation="MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ QVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLS NFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTA EVLEEMGAEHVPCPVDDIVVDEDNKIVTTPAYMLAQNIAEAASGIDKLVSRVLVLAE" gene 3350577..3350697 /gene="arcZ" /locus_tag="b4450" /gene_synonym="ECK3199; JWR0254; psrA16; ryhA; sraH" /db_xref="EcoGene:EG31163" /db_xref="GeneID:2847690" ncRNA 3350577..3350697 /ncRNA_class="antisense_RNA" /gene="arcZ" /locus_tag="b4450" /gene_synonym="ECK3199; JWR0254; psrA16; ryhA; sraH" /product="sRNA positive antisense regulator of rpoS; binds Hfq" /note="identified in a large scale screen" /db_xref="ASAP:ABE-0047270" /db_xref="EcoGene:EG31163" /db_xref="GeneID:2847690" gene complement(3350689..3353025) /gene="arcB" /locus_tag="b3210" /gene_synonym="ECK3200; JW5536" /db_xref="EcoGene:EG10062" /db_xref="GeneID:947887" CDS complement(3350689..3353025) /gene="arcB" /locus_tag="b3210" /gene_synonym="ECK3200; JW5536" /function="enzyme; Global regulatory functions" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009060 - aerobic respiration; GO:0006464 - protein modification process" /note="aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcA" /codon_start=1 /transl_table=11 /product="aerobic respiration control sensor histidine protein kinase, cognate to two-component response regulators ArcA and RssB" /protein_id="YP_026207.1" /db_xref="GI:49176326" /db_xref="ASAP:ABE-0010537" /db_xref="UniProtKB/Swiss-Prot:P0AEC3" /db_xref="EcoGene:EG10062" /db_xref="GeneID:947887" /translation="MKQIRLLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTM VLHGQVESIDVIRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRERDL SLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKEREETQIQLEQQSSFLRSF LDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLKPADVYSPEAAAKVIETDEK VFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLMGFGRDITERKRYQDAL ERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNI FNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQV ITDGTRLRQILWNLISNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKI FAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPSV AEEVDDAFDEDDMPLPALNVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFK PGEYDLVLLDIQLPDMTGLDISRELTKRYPREDLPPLVALTANVLKDKQEYLNAGMDD VLSKPLSVPALTAMIKKFWDTQDDEESTVTTEENSKSEALLDIPMLEQYLELVGPKLI TDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQS PDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKATKK" gene complement(3353121..3354050) /gene="yhcC" /locus_tag="b3211" /gene_synonym="ECK3201; JW3178" /db_xref="EcoGene:EG12809" /db_xref="GeneID:947733" CDS complement(3353121..3354050) /gene="yhcC" /locus_tag="b3211" /gene_synonym="ECK3201; JW3178" /codon_start=1 /transl_table=11 /product="putative Fe-S oxidoreductase, Radical SAM superfamily protein" /protein_id="NP_417678.1" /db_xref="GI:16131101" /db_xref="ASAP:ABE-0010540" /db_xref="UniProtKB/Swiss-Prot:P0ADW6" /db_xref="EcoGene:EG12809" /db_xref="GeneID:947733" /translation="MQLQKLVNMFGGDLTRRYGQKVHKLTLHGGFSCPNRDGTIGRGG CTFCNVASFADEAQQHRSIAEQLAHQANLVNRAKRYLAYFQAYTSTFAEVQVLRSMYQ QAVSQANIVGLCVGTRPDCVPDAVLDLLCEYKDQGYEVWLELGLQTAHDKTLHRINRG HDFACYQRTTQLARQRGLKVCSHLIVGLPGEGQAECLQTLERVVETGVDGIKLHPLHI VKGSIMAKAWEAGRLNGIELEDYTLTAGEMIRHTPPEVIYHRISASARRPTLLAPLWC ENRWTGMVELDRYLNEHGVQGSALGRPWLPPTE" gene 3354725..3359185 /gene="gltB" /locus_tag="b3212" /gene_synonym="aspB; ECK3202; JW3179; ossB; psiQ" /db_xref="EcoGene:EG10403" /db_xref="GeneID:947724" CDS 3354725..3359185 /gene="gltB" /locus_tag="b3212" /gene_synonym="aspB; ECK3202; JW3179; ossB; psiQ" /EC_number="1.4.1.13" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_process="GO:0006537 - glutamate biosynthetic process; GO:0006807 - nitrogen compound metabolic process" /codon_start=1 /transl_table=11 /product="glutamate synthase, large subunit" /protein_id="NP_417679.2" /db_xref="GI:308209621" /db_xref="ASAP:ABE-0010545" /db_xref="UniProtKB/Swiss-Prot:P09831" /db_xref="EcoGene:EG10403" /db_xref="GeneID:947724" /translation="MLYDKSLERDNCGFGLIAHIEGEPSHKVVRTAIHALARMQHRGA ILADGKTGDGCGLLLQKPDRFFRIVAQERGWRLAKNYAVGMLFLNKDPELAAAARRIV EEELQRETLSIVGWRDVPTNEGVLGEIALSSLPRIEQIFVNAPAGWRPRDMERRLFIA RRRIEKRLEADKDFYVCSLSNLVNIYKGLCMPTDLPRFYLDLADLRLESAICLFHQRF STNTVPRWPLAQPFRYLAHNGEINTITGNRQWARARTYKFQTPLIPDLHDAAPFVNET GSDSSSMDNMLELLLAGGMDIIRAMRLLVPPAWQNNPDMDPELRAFFDFNSMHMEPWD GPAGIVMSDGRFAACNLDRNGLRPARYVITKDKLITCASEVGIWDYQPDEVVEKGRVG PGELMVIDTRSGRILHSAETDDDLKSRHPYKEWMEKNVRRLVPFEDLPDEEVGSRELD DDTLASYQKQFNYSAEELDSVIRVLGENGQEAVGSMGDDTPFAVLSSQPRIIYDYFRQ QFAQVTNPPIDPLREAHVMSLATSIGREMNVFCEAEGQAHRLSFKSPILLYSDFKQLT TMKEEHYRADTLDITFDVTKTTLEATVKELCDKAEKMVRSGTVLLVLSDRNIAKDRLP VPAPMAVGAIQTRLVDQSLRCDANIIVETASARDPHHFAVLLGFGATAIYPYLAYETL GRLVDTHAIAKDYRTVMLNYRNGINKGLYKIMSKMGISTIASYRCSKLFEAVGLHDDV VGLCFQGAVSRIGGASFEDFQQDLLNLSKRAWLARKPISQGGLLKYVHGGEYHAYNPD VVRTLQQAVQSGEYSDYQEYAKLVNERPATTLRDLLAITPGENAVNIADVEPASELFK RFDTAAMSIGALSPEAHEALAEAMNSIGGNSNSGEGGEDPARYGTNKVSRIKQVASGR FGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSVPGVTLISPPPHH DIYSIEDLAQLIFDLKQVNPKAMISVKLVSEPGVGTIATGVAKAYADLITIAGYDGGT GASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKTGVDIIKAAILGAE SFGFGTGPMVALGCKYLRICHLNNCATGVATQDDKLRKNHYHGLPFKVTNYFEFIARE TRELMAQLGVTRLVDLIGRTDLLKELDGFTAKQQKLALSKLLETAEPHPGKALYCTEN NPPFDNGLLNAQLLQQAKPFVDERQSKTFWFDIRNTDRSVGASLSGYIAQTHGDQGLA ADPIKAYFNGTAGQSFGVWNAGGVELYLTGDANDYVGKGMAGGLIAIRPPVGSAFRSH EASIIGNTCLYGATGGRLYAAGRAGERFGVRNSGAITVVEGIGDNGCEYMTGGIVCIL GKTGVNFGAGMTGGFAYVLDESGDFRKRVNPELVEVLSVDALAIHEEHLRGLITEHVQ HTGSQRGEEILANWSTFATKFALVKPKSSDVKALLGHRSRSAAELRVQAQ" gene 3359198..3360616 /gene="gltD" /locus_tag="b3213" /gene_synonym="aspB; ECK3203; JW3180; ossB; psiQ" /db_xref="EcoGene:EG10404" /db_xref="GeneID:947723" CDS 3359198..3360616 /gene="gltD" /locus_tag="b3213" /gene_synonym="aspB; ECK3203; JW3180; ossB; psiQ" /EC_number="1.4.1.13" /function="enzyme; Central intermediary metabolism: Pool, multipurpose conversions" /GO_process="GO:0006537 - glutamate biosynthetic process; GO:0006807 - nitrogen compound metabolic process" /note="glutamate synthase, small subunit" /codon_start=1 /transl_table=11 /product="glutamate synthase, 4Fe-4S protein, small subunit" /protein_id="NP_417680.1" /db_xref="GI:16131103" /db_xref="ASAP:ABE-0010547" /db_xref="UniProtKB/Swiss-Prot:P09832" /db_xref="EcoGene:EG10404" /db_xref="GeneID:947723" /translation="MSQNVYQFIDLQRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQA DRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDR LCEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLA CADVLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTE VGRDVQLDDLLSDYDAVFLGVGTYQSMRGGLENEDADGVYAALPFLIANTKQLMGFGE TRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENMPGSRREVKN AREEGVEFKFNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPA DAVIMAFGFRPHNMEWLAKHSVELDSQGRIIAPEGSDNAFQTSNPKIFAGGDIVRGSD LVVTAIAEGRKAADGIMNWLEV" repeat_region 3360688..3360786 /note="RIP51 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site" gene 3361176..3361940 /gene="gltF" /locus_tag="b3214" /gene_synonym="ECK3204; JW3181; ossB" /db_xref="EcoGene:EG11514" /db_xref="GeneID:947746" CDS 3361176..3361940 /gene="gltF" /locus_tag="b3214" /gene_synonym="ECK3204; JW3181; ossB" /function="regulator; Central intermediary metabolism: Pool, multipurpose conversions" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006537 - glutamate biosynthetic process; GO:0006807 - nitrogen compound metabolic process; GO:0006355 - regulation of transcription, DNA-dependent" /note="regulator of gltBDF operon, induction of Ntr enzymes" /codon_start=1 /transl_table=11 /product="periplasmic protein" /protein_id="NP_417681.1" /db_xref="GI:16131104" /db_xref="ASAP:ABE-0010549" /db_xref="UniProtKB/Swiss-Prot:P28721" /db_xref="EcoGene:EG11514" /db_xref="GeneID:947746" /translation="MFFKKNLTTAAICAALSVAAFSAMATDSTDTELTIIGEYTPGAC TPVVTGGGIVDYGKHHNSALNPTGKSNKLVQLGRKNSTLNITCTAPTLIAVTSKDNRQ STIVALNDTSYIEKAYDTLVDMKGTKNAFGLGSAPNGQKIGAASIGIDRSNGGIHAAD DTGEIPVDLIQTDHWSAATPTWKASSNGAFCSLTSCSAIERGYSVAKTGELTPVAITA VTFPLLIDAAVNDNTILGSDETIKLDGNVTISVQYL" gene 3362112..3362786 /gene="yhcA" /locus_tag="b3215" /gene_synonym="ECK3205; JW3182" /db_xref="EcoGene:EG11515" /db_xref="GeneID:947741" CDS 3362112..3362786 /gene="yhcA" /locus_tag="b3215" /gene_synonym="ECK3205; JW3182" /function="putative factor; Not classified" /GO_process="GO:0006457 - protein folding" /note="putative chaperone" /codon_start=1 /transl_table=11 /product="putative periplasmic chaperone protein" /protein_id="NP_417682.1" /db_xref="GI:16131105" /db_xref="ASAP:ABE-0010552" /db_xref="UniProtKB/Swiss-Prot:P28722" /db_xref="EcoGene:EG11515" /db_xref="GeneID:947741" /translation="MLRHITFTVFITTSMNTLATGMVPETSVLLVDEKRGEASINIKN TDDHPSLLYTTIVDLPESNKSIRLIPTQPVIRVEAGQVQQVRFLLQATVPLQSEELKR VTFEGIPPKDDKSSRVTVSIRQDLPVLIHPASLPEERETWKFLEWRKNGDQIEISNPS NYVVRMTLQFKTLPSGKTGAINKTYFLPHTSTTTALTNATDTKVEFYPASRYGYRGNK YVTDLK" gene 3362807..3365188 /gene="yhcD" /locus_tag="b3216" /gene_synonym="ECK3206; JW3183" /db_xref="EcoGene:EG12810" /db_xref="GeneID:947738" CDS 3362807..3365188 /gene="yhcD" /locus_tag="b3216" /gene_synonym="ECK3206; JW3183" /function="putative membrane; Not classified" /GO_component="GO:0009279 - cell outer membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative outer membrane protein" /codon_start=1 /transl_table=11 /product="putative outer membrane fimbrial subunit usher protein" /protein_id="NP_417683.1" /db_xref="GI:16131106" /db_xref="ASAP:ABE-0010554" /db_xref="UniProtKB/Swiss-Prot:P45420" /db_xref="EcoGene:EG12810" /db_xref="GeneID:947738" /translation="MLKKTLLAYTIGFAFSPPANADGIEIAAVDFDRETLKSLGVDPN ISHYFSRSARFLPGEYSLIVSVNGEKKGNIATRFDENGDICLDQAFLQQAGLKIPSEE KNGCYDYILSYPGTTITPLPNQEALDIIVSPQAIIPIGLDLTNAATGGTAALLNYSLM SSRAEFSNGSSDYSQAALEGGININDWMLRSHQFLTQTNGTFSNQNSSTYLQRTFTDL KTLMRAGEVNLNNSVLEGASIYGIEIAPDNALQTSGSGVQVTGIANTSQARVEIRQQG VLIHSILVPAGAFTIPDVPVRNGNSDLNVTVVETDGSSHNYIVPSTLFNQHVESFQGY RFAIGRVDDDYDESPWVISASSGWNLTRWSAMNGGVIVAENYQAASIRSSLVPLPDLT VSSQISTSQDTKDSLQGQKYRLDANYNLPFSLGLTTSLTRSDRHYRELSEAIDDDYTD PTKSTYALGLNWSNSILGGFNISGYKTYSYDGDNDSSNLNINWNKAFKHATVSVNWQH QLSASENNEDDGDLFYVNISIPFGRSNTATLYTRHDDHKTHYGTGVMGVVSDEMSYYV NAERDHDERETSLNGSISSNLHYTQVSLAAGASGSDSRTYNGTMSGGIAVHDQGVTFS PWTINDTFAIAKMDNNIAGVRITSQAGPVWTDFRGNAVIPSIQPWRTSGVEIDTASLP KNVDIGNGTKMIKQGRGAVGKVGFSAITQRRALLNITLSDGKKLPRGVAIEDSEGNYL TTSVDDGVVFLNNIKPDMVLDIKDEQQSCRIHLTFPEDAPKDVFYETATGECQ" gene join(3365185..3365551,3366751..3366929) /gene="yhcE" /locus_tag="b4569" /gene_synonym="ECK3207; JW3184; JW3187" /pseudo /db_xref="EcoGene:EG12811" /db_xref="GeneID:4056032" CDS join(3365185..3365551,3366751..3366929) /gene="yhcE" /locus_tag="b4569" /gene_synonym="ECK3207; JW3184; JW3187" /note="pseudogene fragment; interrupted by IS5" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0010556" /db_xref="ASAP:ABE-0285070" /db_xref="ASAP:ABE-0285102" /db_xref="UniProtKB/Swiss-Prot:P45421" /db_xref="EcoGene:EG12811" /db_xref="GeneID:4056032" mobile_element complement(3365556..3366750) /mobile_element_type="insertion sequence:IS5R" gene complement(3365702..3366718) /gene="insH1" /locus_tag="b3218" /gene_synonym="ECK0261" /db_xref="EcoGene:EG40008" /db_xref="GeneID:947743" CDS complement(3365702..3366718) /gene="insH1" /locus_tag="b3218" /gene_synonym="ECK0261" /function="IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related" /codon_start=1 /transl_table=11 /product="IS5 transposase and trans-activator" /protein_id="NP_417685.1" /db_xref="GI:16131108" /db_xref="ASAP:ABE-0010559" /db_xref="UniProtKB/Swiss-Prot:P0CE57" /db_xref="EcoGene:EG40008" /db_xref="GeneID:947743" /translation="MFVIWSHRTGFIMSHQLTFADSEFSSKRRQTRKEIFLSRMEQIL PWQNMVEVIEPFYPKAGNGRRPYPLETMLRIHCMQHWYNLSDGAMEDALYEIASMRLF ARLSLDSALPDRTTIMNFRHLLEQHQLARQLFKTINRWLAEAGVMMTQGTLVDATIIE APSSTKNKEQQRDPEMHQTKKGNQWHFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQL GNLLHGEEQFVSADAGYQGAPQREELAEVDVDWLIAERPGKVRTLKQHPRKNKTAINI EYMKASIRARVEHPFRIIKRQFGFVKARYKGLLKNDNQLAMLFTLANLFRADQMIRQW ERSH" gene 3366926..3367642 /gene="yhcF" /locus_tag="b3219" /gene_synonym="ECK3208; JW3188" /db_xref="EcoGene:EG12812" /db_xref="GeneID:947735" CDS 3366926..3367642 /gene="yhcF" /locus_tag="b3219" /gene_synonym="ECK3208; JW3188" /function="putative regulator; Not classified" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent; GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_417686.1" /db_xref="GI:16131109" /db_xref="ASAP:ABE-0010564" /db_xref="UniProtKB/Swiss-Prot:P45422" /db_xref="EcoGene:EG12812" /db_xref="GeneID:947735" /translation="MNNVKLLIAGSAFFAMSAQAADRVSIDVKVTLEAAACTPILSNG GVVNFGSHSVNRLSTQHYTQIGTRNINMTITCESATGIAITARDTRMDSMTTGKDSGG QSGVKYTLNGGGYISQTTRLFGLGKTKDNKNIGSYAVLIDSNNISASNGSQTLAVSIA GADAVITGQKRAWQTLTAYPLAVDQSYYYTFVKPGETTPTPVTNAIIPLQVSASIAND LGGSEKIELDGKAVISVVYL" gene 3367827..3368954 /gene="yhcG" /locus_tag="b3220" /gene_synonym="ECK3209; JW3189" /db_xref="EcoGene:EG12813" /db_xref="GeneID:947739" CDS 3367827..3368954 /gene="yhcG" /locus_tag="b3220" /gene_synonym="ECK3209; JW3189" /codon_start=1 /transl_table=11 /product="DUF1016 family protein in the PD-(D/E)XK nuclease superfamily" /protein_id="NP_417687.1" /db_xref="GI:16131110" /db_xref="ASAP:ABE-0010567" /db_xref="UniProtKB/Swiss-Prot:P45423" /db_xref="EcoGene:EG12813" /db_xref="GeneID:947739" /translation="MESLSEGTTAGYQQIHDGIIHLVDSARTETVRSVNALMTATYQE IGRRIVEFEQGGEARAAYGAQLIKRLSKDLCLRYKRGFSAKNLRQMRLFYLFFQHVEI HQTMSGELTPLGIPQTPSAEFPSAKIWQTLSAKSFPLPRSTYVRLLSVKNADARSFYE KETLRCGWSVRQLERQIATQFYERTLLSHDKSAMLQQHAPAETHILPQQAIRDPFVLE FLELKDEYSESDFEEALINHLMDFMLELGDDFAFVGRQRRLRIDDNWFRVDLLFFHRR LRCLLIVDLKVGKFSYSDAGQMNMYLNYAKEHWTLPDENPPIGLVLCAEKGAGEAHYA LAGLPNTVLASEYKMQLPDEKRLADELVRTQAVLEEGYRRR" gene complement(3369014..3369478) /gene="yhcH" /locus_tag="b3221" /gene_synonym="ECK3210; JW3190" /db_xref="EcoGene:EG12814" /db_xref="GeneID:947750" CDS complement(3369014..3369478) /gene="yhcH" /locus_tag="b3221" /gene_synonym="ECK3210; JW3190" /function="putative enzyme; Not classified" /codon_start=1 /transl_table=11 /product="DUF386 family protein, cupin superfamily" /protein_id="NP_417688.1" /db_xref="GI:16131111" /db_xref="ASAP:ABE-0010569" /db_xref="UniProtKB/Swiss-Prot:P45424" /db_xref="EcoGene:EG12814" /db_xref="GeneID:947750" /translation="MMMGEVQSLPSAGLHPALQDALTLALAARPQEKAPGRYELQGDN IFMNVMTFNTQSPVEKKAELHEQYIDIQLLLNGEERILFGMAGTARQCEEFHHEDDYQ LCSTIDNEQAIILKPGMFAVFMPGEPHKPGCVVGEPGEIKKVVVKVKADLMA" gene complement(3369475..3370350) /gene="nanK" /locus_tag="b3222" /gene_synonym="ECK3211; JW5538; yhcI" /db_xref="EcoGene:EG12815" /db_xref="GeneID:947757" CDS complement(3369475..3370350) /gene="nanK" /locus_tag="b3222" /gene_synonym="ECK3211; JW5538; yhcI" /function="putative regulator; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0046349 - amino sugar biosynthetic process" /codon_start=1 /transl_table=11 /product="N-acetylmannosamine kinase" /protein_id="NP_417689.4" /db_xref="GI:90111558" /db_xref="ASAP:ABE-0010571" /db_xref="UniProtKB/Swiss-Prot:P45425" /db_xref="EcoGene:EG12815" /db_xref="GeneID:947757" /translation="MTTLAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPEALRDA LSALVSPLQAHAQRVAIASTGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLTNLPTIA INDAQAAAWAEFQALDGDITDMVFITVSTGVGGGVVSGCKLLTGPGGLAGHIGHTLAD PHGPVCGCGRTGCVEAIASGRGIAAAAQGELAGADAKTIFTRAGQGDEQAQQLIHRSA RTLARLIADIKATTDCQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHD AGLLGAALLAQGEKL" gene complement(3370347..3371036) /gene="nanE" /locus_tag="b3223" /gene_synonym="ECK3212; JW3192; yhcJ" /db_xref="EcoGene:EG12816" /db_xref="GeneID:947745" CDS complement(3370347..3371036) /gene="nanE" /locus_tag="b3223" /gene_synonym="ECK3212; JW3192; yhcJ" /function="putative enzyme; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0046349 - amino sugar biosynthetic process" /codon_start=1 /transl_table=11 /product="putative N-acetylmannosamine-6-P epimerase" /protein_id="NP_417690.1" /db_xref="GI:16131113" /db_xref="ASAP:ABE-0010575" /db_xref="UniProtKB/Swiss-Prot:P0A761" /db_xref="EcoGene:EG12816" /db_xref="GeneID:947745" /translation="MSLLAQLDQKIAANGGLIVSCQPVPDSPLDKPEIVAAMALAAEQ AGAVAIRIEGVANLQATRAVVSVPIIGIVKRDLEDSPVRITAYIEDVDALAQAGADII AIDGTDRPRPVPVETLLARIHHHGLLAMTDCSTPEDGLACQKLGAEIIGTTLSGYTTP ETPEEPDLALVKTLSDAGCRVIAEGRYNTPAQAADAMRHGAWAVTVGSAITRLEHICQ WYNTAMKKAVL" gene complement(3371084..3372574) /gene="nanT" /locus_tag="b3224" /gene_synonym="ECK3213; JW3193" /db_xref="EcoGene:EG20145" /db_xref="GeneID:947740" CDS complement(3371084..3372574) /gene="nanT" /locus_tag="b3224" /gene_synonym="ECK3213; JW3193" /function="transport; Murein sacculus, peptidoglycan" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0046349 - amino sugar biosynthetic process" /codon_start=1 /transl_table=11 /product="sialic acid transporter" /protein_id="NP_417691.4" /db_xref="GI:90111559" /db_xref="ASAP:ABE-0010577" /db_xref="UniProtKB/Swiss-Prot:P41036" /db_xref="EcoGene:EG20145" /db_xref="GeneID:947740" /translation="MSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLT EVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLAC GFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVA AQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILY RGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSAGKRWPT GVMLMVVVLFAFLYSWPIQALLPTYLKTDLAYNPHTVANVLFFSGFGAAVGCCVGGFL GDWLGTRKAYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGIAGILPKLIG GYFDTDQRAAGLGFTYNVGALGGALAPIIGALIAQRLDLGTALASLSFSLTFVVILLI GLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGSAKNDLVKTKS" gene complement(3372683..3373576) /gene="nanA" /locus_tag="b3225" /gene_synonym="ECK3214; JW3194; npl" /db_xref="EcoGene:EG10637" /db_xref="GeneID:947742" CDS complement(3372683..3373576) /gene="nanA" /locus_tag="b3225" /gene_synonym="ECK3214; JW3194; npl" /EC_number="4.1.3.3" /function="enzyme; Surface polysaccharides & antigens" /experiment="N-terminus verified by Edman degradation: PMID 3909108" /GO_function="GO:0042280 - cell surface antigen activity, host-interacting" /GO_process="GO:0046349 - amino sugar biosynthetic process" /note="N-acetylneuraminate lyase (aldolase); catabolism of sialic acid; not K-12?" /codon_start=1 /transl_table=11 /product="N-acetylneuraminate lyase" /protein_id="NP_417692.1" /db_xref="GI:16131115" /db_xref="ASAP:ABE-0010579" /db_xref="UniProtKB/Swiss-Prot:P0A6L4" /db_xref="EcoGene:EG10637" /db_xref="GeneID:947742" /translation="MATNLRGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYV GGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDA VSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPG VGALKQTSGDLYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQ GIVKALKEGDIQTAQKLQTECNKVIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGP VDEKYLPELKALAQQLMQERG" gene complement(3373698..3374489) /gene="nanR" /locus_tag="b3226" /gene_synonym="ECK3215; JW3195; yhcK" /db_xref="EcoGene:EG12817" /db_xref="GeneID:945468" CDS complement(3373698..3374489) /gene="nanR" /locus_tag="b3226" /gene_synonym="ECK3215; JW3195; yhcK" /function="regulator; Not classified" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="sialic acid-inducible nan operon repressor" /protein_id="NP_417693.3" /db_xref="GI:49176329" /db_xref="ASAP:ABE-0010584" /db_xref="UniProtKB/Swiss-Prot:P0A8W0" /db_xref="EcoGene:EG12817" /db_xref="GeneID:945468" /translation="MGLMNAFDSQTEDSSPAIGRNLRSRPLARKKLSEMVEEELEQMI RRREFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSADT IIGELSGMAKDFLSHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIDLLAKALEINSQ SLDNNAAFIRSDVDFHRVLAEIPGNPIFMAIHVALLDWLIAARPTVTDQALHEHNNVS YQQHIAIVDAIRRHDPDEADRALQSHLNSVSATWHAFGQTTNKKK" gene 3374869..3376236 /gene="dcuD" /locus_tag="b3227" /gene_synonym="ECK3216; JW3196; yhcL" /db_xref="EcoGene:EG12818" /db_xref="GeneID:946575" CDS 3374869..3376236 /gene="dcuD" /locus_tag="b3227" /gene_synonym="ECK3216; JW3196; yhcL" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="NP_417694.1" /db_xref="GI:16131117" /db_xref="ASAP:ABE-0010589" /db_xref="UniProtKB/Swiss-Prot:P45428" /db_xref="EcoGene:EG12818" /db_xref="GeneID:946575" /translation="MFGIIISVIVLITMGYLILKNYKPQVVLAAAGIFLMMCGVWLGF GGVLDPTKSSGYLIVDIYNEILRMLSNRIAGLGLSIMAVGGYARYMERIGASRAMVSL LSRPLKLIRSPYIILSATYVIGQIMAQFITSASGLGMLLMVTLFPTLVSLGVSRLSAV AVIATTMSIEWGILETNSIFAAQVAGMKIATYFFHYQLPVASCVIISVAISHFFVQRA FDKKDKNINHEQAEQKALDNVPPLYYAILPVMPLILMLGSLFLAHVGLMQSELHLVVV MLLSLTVTMFVEFFRKHNLRETMDDVQAFFDGMGTQFANVVTLVVAGEIFAKGLTTIG TVDAVIRGAEHSGLGGIGVMIIMALVIAICAIVMGSGNAPFMSFASLIPNIAAGLHVP AVVMIMPMHFATTLARAVSPITAVVVVTSGIAGVSPFAVVKRTAIPMAVGFVVNMIAT ITLFY" gene complement(3376279..3376776) /gene="sspB" /locus_tag="b3228" /gene_synonym="ECK3217; JW3197" /db_xref="EcoGene:EG10978" /db_xref="GeneID:944774" CDS complement(3376279..3376776) /gene="sspB" /locus_tag="b3228" /gene_synonym="ECK3217; JW3197" /function="regulator; Global regulatory functions" /experiment="N-terminus verified by Edman degradation: PMID 11009422" /GO_process="GO:0042594 - response to starvation" /note="stringent starvation protein B" /codon_start=1 /transl_table=11 /product="ClpXP protease specificity enhancing factor" /protein_id="NP_417695.1" /db_xref="GI:16131118" /db_xref="ASAP:ABE-0010591" /db_xref="UniProtKB/Swiss-Prot:P0AFZ3" /db_xref="EcoGene:EG10978" /db_xref="GeneID:944774" /translation="MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPME YARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGT MFEPEAAYDEDTSIMNDEEASADNETVMSVIDGDKPDHDDDTHPDDEPPQPPRGGRPA LRVVK" gene complement(3376782..3377420) /gene="sspA" /locus_tag="b3229" /gene_synonym="ECK3218; JW3198; pog; ssp" /db_xref="EcoGene:EG10977" /db_xref="GeneID:944744" CDS complement(3376782..3377420) /gene="sspA" /locus_tag="b3229" /gene_synonym="ECK3218; JW3198; pog; ssp" /function="regulator; Global regulatory functions" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent; GO:0042594 - response to starvation; GO:0006350 - transcription" /note="regulator of transcription; stringent starvation protein A" /codon_start=1 /transl_table=11 /product="stringent starvation protein A, phage P1 late gene activator, RNAP-associated acid-resistance protein, inactive glutathione S-transferase homolog" /protein_id="NP_417696.1" /db_xref="GI:16131119" /db_xref="ASAP:ABE-0010594" /db_xref="UniProtKB/Swiss-Prot:P0ACA3" /db_xref="EcoGene:EG10977" /db_xref="GeneID:944744" /translation="MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSFEIEHVEKD NPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARGESRLY MHRIEKDWYTLMNTIINGSASEADAARKQLREELLAIAPVFGQKPYFLSDEFSLVDCY LAPLLWRLPQLGIEFSGPGAKELKGYMTRVFERDSFLASLTEAEREMRLGRS" gene complement(3377815..3378207) /gene="rpsI" /locus_tag="b3230" /gene_synonym="ECK3219; JW3199" /db_xref="EcoGene:EG10908" /db_xref="GeneID:949000" CDS complement(3377815..3378207) /gene="rpsI" /locus_tag="b3230" /gene_synonym="ECK3219; JW3199" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S9" /protein_id="NP_417697.1" /db_xref="GI:16131120" /db_xref="ASAP:ABE-0010597" /db_xref="UniProtKB/Swiss-Prot:P0A7X3" /db_xref="EcoGene:EG10908" /db_xref="GeneID:949000" /translation="MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETA RMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAG FVTRDARQVERKKVGLRKARRRPQFSKR" gene complement(3378223..3378651) /gene="rplM" /locus_tag="b3231" /gene_synonym="ECK3220; JW3200" /db_xref="EcoGene:EG10874" /db_xref="GeneID:947828" CDS complement(3378223..3378651) /gene="rplM" /locus_tag="b3231" /gene_synonym="ECK3220; JW3200" /function="structural component; Ribosomal proteins - synthesis, modification" /experiment="N-terminus verified by Edman degradation: PMID 365580,10739205" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L13" /protein_id="NP_417698.1" /db_xref="GI:16131121" /db_xref="ASAP:ABE-0010599" /db_xref="UniProtKB/Swiss-Prot:P0AA10" /db_xref="EcoGene:EG10874" /db_xref="GeneID:947828" /translation="MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEY TPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIE IAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI" gene complement(3378870..3379997) /gene="zapE" /locus_tag="b3232" /gene_synonym="ECK3221; JW3201; yhcM" /db_xref="EcoGene:EG12819" /db_xref="GeneID:947821" CDS complement(3378870..3379997) /gene="zapE" /locus_tag="b3232" /gene_synonym="ECK3221; JW3201; yhcM" /function="enzyme; Not classified" /codon_start=1 /transl_table=11 /product="divisome ATPase" /protein_id="NP_417699.1" /db_xref="GI:16131122" /db_xref="ASAP:ABE-0010602" /db_xref="UniProtKB/Swiss-Prot:P64612" /db_xref="EcoGene:EG12819" /db_xref="GeneID:947821" /translation="MQSVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSTP PAPRTSGLMARVGKLWGKREDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQR LHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLM KALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTL TQAHLWLSPLHDETRAQMDKLWLALAGGKRENSPTLEINHRPLATMGVENQTLAVSFT TLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVS AEVPLYEIYQGDRLKFEFQRCLSRLQEMQSEEYLKREHLAG" gene 3380191..3380589 /gene="yhcB" /locus_tag="b3233" /gene_synonym="ECK3222; JW5539" /db_xref="EcoGene:EG12614" /db_xref="GeneID:947815" CDS 3380191..3380589 /gene="yhcB" /locus_tag="b3233" /gene_synonym="ECK3222; JW5539" /codon_start=1 /transl_table=11 /product="DUF1043 family inner membrane-anchored protein" /protein_id="NP_417700.2" /db_xref="GI:90111560" /db_xref="ASAP:ABE-0010606" /db_xref="UniProtKB/Swiss-Prot:P0ADW3" /db_xref="EcoGene:EG12614" /db_xref="GeneID:947815" /translation="MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAE LDEYREELVSHFARSAELLDTMAHDYRQLYQHMAKSSSSLLPELSAEANPFRNRLAES EASNDQAPVQMPRDYSEGASGLLRTGAKRD" gene 3380743..3382110 /gene="degQ" /locus_tag="b3234" /gene_synonym="ECK3223; hhoA; JW3203" /db_xref="EcoGene:EG12612" /db_xref="GeneID:947812" CDS 3380743..3382110 /gene="degQ" /locus_tag="b3234" /gene_synonym="ECK3223; hhoA; JW3203" /EC_number="3.4.21.-" /function="enzyme; Degradation of proteins, peptides, glycopeptides" /note="serine endoprotease" /codon_start=1 /transl_table=11 /product="serine endoprotease, periplasmic" /protein_id="NP_417701.1" /db_xref="GI:16131124" /db_xref="ASAP:ABE-0010609" /db_xref="UniProtKB/Swiss-Prot:P39099" /db_xref="EcoGene:EG12612" /db_xref="GeneID:947812" /translation="MKKQTQLLSALALSVGLTLSASFQAVASIPGQVADQAPLPSLAP MLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKG YVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSD KLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGAL LNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEM SADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIAT TEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDGGKGI KIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAKPAIIALQIVRGNESI YLLMR" gene 3382200..3383267 /gene="degS" /locus_tag="b3235" /gene_synonym="ECK3224; hhoB; htrH; JW3204" /db_xref="EcoGene:EG11652" /db_xref="GeneID:947865" CDS 3382200..3383267 /gene="degS" /locus_tag="b3235" /gene_synonym="ECK3224; hhoB; htrH; JW3204" /EC_number="3.4.21.-" /function="enzyme; Degradation of proteins, peptides, glyco" /GO_component="GO:0042597 - periplasmic space" /GO_function="GO:0008233 - peptidase activity" /GO_process="GO:0006508 - proteolysis" /note="protease" /codon_start=1 /transl_table=11 /product="serine endoprotease, periplasmic" /protein_id="NP_417702.1" /db_xref="GI:16131125" /db_xref="ASAP:ABE-0010611" /db_xref="UniProtKB/Swiss-Prot:P0AEE3" /db_xref="EcoGene:EG11652" /db_xref="GeneID:947865" /translation="MFVKLLRSVAIGLIVGAILLVAMPSLRSLNPLSTPQFDSTDETP ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDAD QIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGN PYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTL SFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGI DQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV VMRDDKQLTLQVTIQEYPATN" gene complement(3383330..3384268) /gene="mdh" /locus_tag="b3236" /gene_synonym="ECK3225; JW3205" /db_xref="EcoGene:EG10576" /db_xref="GeneID:947854" CDS complement(3383330..3384268) /gene="mdh" /locus_tag="b3236" /gene_synonym="ECK3225; JW3205" /EC_number="1.1.1.37" /function="enzyme; Energy metabolism, carbon: TCA cycle" /experiment="N-terminus verified by Edman degradation: PMID 7028159,8506346,8670822,9298646,9600841,9740056" /GO_process="GO:0009061 - anaerobic respiration; GO:0016052 - carbohydrate catabolic process; GO:0006113 - fermentation; GO:0006094 - gluconeogenesis; GO:0009436 - glyoxylate catabolic process; GO:0006099 - tricarboxylic acid cycle" /note="malate dehydrogenase" /codon_start=1 /transl_table=11 /product="malate dehydrogenase, NAD(P)-binding" /protein_id="NP_417703.1" /db_xref="GI:16131126" /db_xref="ASAP:ABE-0010613" /db_xref="UniProtKB/Swiss-Prot:P61889" /db_xref="EcoGene:EG10576" /db_xref="GeneID:947854" /translation="MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAV DLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLV QQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAE LKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVSFTEQEVADLTKRIQNAGTEVVEAKA GGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVE ERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK" gene 3384703..3385173 /gene="argR" /locus_tag="b3237" /gene_synonym="ECK3226; JW3206; Rarg; xerA" /db_xref="EcoGene:EG10070" /db_xref="GeneID:947861" CDS 3384703..3385173 /gene="argR" /locus_tag="b3237" /gene_synonym="ECK3226; JW3206; Rarg; xerA" /function="regulator; Amino acid biosynthesis: Arginine" /experiment="N-terminus verified by Edman degradation: PMID 3116542" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0006526 - arginine biosynthetic process; GO:0006350 - transcription" /note="repressor of arg regulon; cer-mediated site specific recombination" /codon_start=1 /transl_table=11 /product="l-arginine-responsive arginine metabolism regulon transcriptional regulator" /protein_id="NP_417704.1" /db_xref="GI:16131127" /db_xref="ASAP:ABE-0010620" /db_xref="UniProtKB/Swiss-Prot:P0A6D0" /db_xref="EcoGene:EG10070" /db_xref="GeneID:947861" /translation="MRSSAKQEELVKAFKALLKEEKFSSQGEIVAALQEQGFDNINQS KVSRMLTKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHTSP GAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPANGFTVKDLYEAILELFDQEL" gene 3385538..3385801 /gene="yhcN" /locus_tag="b3238" /gene_synonym="ECK3227; JW5540" /db_xref="EcoGene:EG12820" /db_xref="GeneID:947835" CDS 3385538..3385801 /gene="yhcN" /locus_tag="b3238" /gene_synonym="ECK3227; JW5540" /codon_start=1 /transl_table=11 /product="cadmium and peroxide resistance protein, stress-induced" /protein_id="NP_417705.2" /db_xref="GI:90111561" /db_xref="ASAP:ABE-0010623" /db_xref="UniProtKB/Swiss-Prot:P64614" /db_xref="EcoGene:EG12820" /db_xref="GeneID:947835" /translation="MKIKTTVAALSVLSVLSFGAFAADSIDAAQAQNREAIGTVSVSG VASSPMDMREMLNKKAEEKGATAYQITEARSGDTWHATAELYK" gene complement(3385857..3386129) /gene="yhcO" /locus_tag="b3239" /gene_synonym="ECK3228; JW3208" /db_xref="EcoGene:EG12821" /db_xref="GeneID:947830" CDS complement(3385857..3386129) /gene="yhcO" /locus_tag="b3239" /gene_synonym="ECK3228; JW3208" /codon_start=1 /transl_table=11 /product="putative barnase inhibitor" /protein_id="NP_417706.1" /db_xref="GI:16131129" /db_xref="ASAP:ABE-0010625" /db_xref="UniProtKB/Swiss-Prot:P64616" /db_xref="EcoGene:EG12821" /db_xref="GeneID:947830" /translation="MNIYTFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDVLMN DVLPLPLEIEFVHLGEKTRRRFGALILLFDEAEEELEGHLRFNVRH" gene complement(3386221..3388188) /gene="aaeB" /locus_tag="b3240" /gene_synonym="ECK3229; JW3209; yhcP" /db_xref="EcoGene:EG12822" /db_xref="GeneID:947747" CDS complement(3386221..3388188) /gene="aaeB" /locus_tag="b3240" /gene_synonym="ECK3229; JW3209; yhcP" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="p-hydroxybenzoic acid efflux system component" /protein_id="NP_417707.1" /db_xref="GI:16131130" /db_xref="ASAP:ABE-0010629" /db_xref="UniProtKB/Swiss-Prot:P46481" /db_xref="EcoGene:EG12822" /db_xref="GeneID:947747" /translation="MGIFSIANQHIRFAVKLATAIVLALFVGFHFQLETPRWAVLTAA IVAAGTAFAAGGEPYSGAIRYRGFLRIIGTFIGCIAGLVIIIAMIRAPLLMILVCCIW AGFCTWISSLVRIENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCSEIVIGIVCA IMADLLFSPRSIKQEVDRELESLLVAQYQLMQLCIKHGDGEVVDKAWGDLVRRTTALQ GMRSNLNMESSRWARANRRLKAINTLSLTLITQSCETYLIQNTRPELITDTFREFFDT PVETAQDVHKQLKRLRRVIAWTGERETPVTIYSWVAAATRYQLLKRGVISNTKINATE EEILQGEPEVKVESAERHHAMVNFWRTTLSCILGTLFWLWTGWTSGSGAMVMIAVVTS LAMRLPNPRMVAIDFIYGTLAALPLGLLYFLVIIPNTQQSMLLLCISLAVLGFFLGIE VQKRRLGSMGALASTINIIVLDNPMTFHFSQFLDSALGQIVGCVLAFTVILLVRDKSR DRTGRVLLNQFVSAAVSAMTTNVARRKENHLPALYQQLFLLMNKFPGDLPKFRLALTM IIAHQRLRDAPIPVNEDLSAFHRQMRRTADHVISARSDDKRRRYFGQLLEELEIYQEK LRIWQAPPQVTEPVNRLAGMLHKYQHALTDS" gene complement(3388194..3389126) /gene="aaeA" /locus_tag="b3241" /gene_synonym="ECK3230; JW3210; yhcQ" /db_xref="EcoGene:EG12823" /db_xref="GeneID:947748" CDS complement(3388194..3389126) /gene="aaeA" /locus_tag="b3241" /gene_synonym="ECK3230; JW3210; yhcQ" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="p-hydroxybenzoic acid efflux system component" /protein_id="NP_417708.1" /db_xref="GI:16131131" /db_xref="ASAP:ABE-0010631" /db_xref="UniProtKB/Swiss-Prot:P46482" /db_xref="EcoGene:EG12823" /db_xref="GeneID:947748" /translation="MKTLIRKFSRTAITVVLVILAFIAIFNAWVYYTESPWTRDARFS ADVVAIAPDVSGLITQVNVHDNQLVKKGQILFTIDQPRYQKALEEAQADVAYYQVLAQ EKRQEAGRRNRLGVQAMSREEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAP ADGWVTNLNVYTGEFITRGSTAVALVKQNSFYVLAYMEETKLEGVRPGYRAEITPLGS NKVLKGTVDSVAAGVTNASSTRDDKGMATIDSNLEWVRLAQRVPVRIRLDNQQENIWP AGTTATVVVTGKQDRDESQDSFFRKMAHRLREFG" gene complement(3389134..3389337) /gene="aaeX" /locus_tag="b3242" /gene_synonym="ECK3231; JW5541; yhcR" /db_xref="EcoGene:EG12824" /db_xref="GeneID:947751" CDS complement(3389134..3389337) /gene="aaeX" /locus_tag="b3242" /gene_synonym="ECK3231; JW5541; yhcR" /codon_start=1 /transl_table=11 /product="DUF1656 family putative inner membrane efflux pump associated protein" /protein_id="NP_417709.2" /db_xref="GI:90111562" /db_xref="ASAP:ABE-0010636" /db_xref="UniProtKB/Swiss-Prot:P46478" /db_xref="EcoGene:EG12824" /db_xref="GeneID:947751" /translation="MSLFPVIVVFGLSFPPIFFELLLSLAIFWLVRRVLVPTGIYDFV WHPALFNTALYCCLFYLISRLFV" gene 3389520..3390449 /gene="aaeR" /locus_tag="b3243" /gene_synonym="ECK3232; JW3212; qseA; yhcS" /db_xref="EcoGene:EG12825" /db_xref="GeneID:947760" CDS 3389520..3390449 /gene="aaeR" /locus_tag="b3243" /gene_synonym="ECK3232; JW3212; qseA; yhcS" /GO_function="GO:0016563 - transcription activator activity; GO:0016564 - transcription repressor activity" /GO_process="GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="transcriptional regulator for aaeXAB operon" /protein_id="NP_417710.1" /db_xref="GI:16131133" /db_xref="ASAP:ABE-0010639" /db_xref="UniProtKB/Swiss-Prot:P67662" /db_xref="EcoGene:EG12825" /db_xref="GeneID:947760" /translation="MERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDEL QVKLLNRSTRSIGLTEAGRIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTM AQNVLAGLTAKMLKEYPGLSVNLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGA MPMVVCAAKSYLTQYGIPEKPADLSSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRF VTNDPMTLVRWLTAGAGIAYVPLMWVINEINRGELEILLPRYQSDPRPVYALYTEKDK LPLKVQVVINSLTDYFVEVGKLFQEMHGRGKEK" gene complement(3390583..3392028) /gene="tldD" /locus_tag="b3244" /gene_synonym="ECK3233; JW3213; yhdO" /db_xref="EcoGene:EG12826" /db_xref="GeneID:947749" CDS complement(3390583..3392028) /gene="tldD" /locus_tag="b3244" /gene_synonym="ECK3233; JW3213; yhdO" /function="phenotype; Not classified" /note="suppresses inhibitory activity of CsrA" /codon_start=1 /transl_table=11 /product="putative peptidase" /protein_id="NP_417711.1" /db_xref="GI:16131134" /db_xref="ASAP:ABE-0010642" /db_xref="UniProtKB/Swiss-Prot:P0AGG8" /db_xref="EcoGene:EG12826" /db_xref="GeneID:947749" /translation="MSLNLVSEQLLAANGLKHQDLFAILGQLAERRLDYGDLYFQSSY HESWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRD SGDGKVQTLGAVEHSPLYTSVDPLQSMSREEKLDILRRVDKVAREADKRVQEVTASLS GVYELILVAATDGTLAADVRPLVRLSVSVLVEEDGKRERGASGGGGRFGYEFFLADLD GEVRADAWAKEAVRMALVNLSAVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRR GTSVFSGQVGELVASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQ DKLNARLMGMTPTGNGRRESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYGIYAPNFG GGQVDITSGKFVFSTSEAYLIENGKVTKPVKGATLIGSGIETMQQISMVGNDLKLDNG VGVCGKEGQSLPVGVGQPTLKVDNLTVGGTA" repeat_region 3392076..3392383 /note="REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences" gene complement(3392458..3396258) /gene="yhdP" /locus_tag="b4472" /gene_synonym="ECK3234; JW5542; yhdQ; yhdR" /db_xref="EcoGene:EG12827" /db_xref="GeneID:2847740" CDS complement(3392458..3396258) /gene="yhdP" /locus_tag="b4472" /gene_synonym="ECK3234; JW5542; yhdQ; yhdR" /codon_start=1 /transl_table=11 /product="DUF3971-AsmA2 domains protein" /protein_id="YP_026208.1" /db_xref="GI:49176330" /db_xref="ASAP:ABE-0174102" /db_xref="UniProtKB/Swiss-Prot:P46474" /db_xref="EcoGene:EG12827" /db_xref="GeneID:2847740" /translation="MRRLPGILLLTGAALVVIAALLVSGLRIALPHLDAWRPEILNKI ESATGMPVEASQLSASWQNFGPTLEAHDIRAELKDGGEFSVKRVTLALDVWQSLLHMR WQFRDLTFWQLRFRTNTPITSGGSDDSLEASHISDLFLRQFDHFDLRDSEVSFLTPSG QRAELAIPQLTWLNDPRRHRAEGLVSLSSLTGQHGVMQVRMDLRDDEGLLSNGRVWLQ ADDIDLKPWLGKWMQDNIALETAQFSLEGWMTIDKGDVTGGDVWLKQGGASWLGEKQT HTLSVDNLTAHITRENPGWQFSIPDTRITMDGKPWPSGALTLAWIPEQDVGGKDNKRS DELRIRASNLELAGLEGIRPLAAKLSPALGDVWRSTQPSGKINTLALDIPLQAADKTR FQASWSDLAWKQWKLLPGAEHFSGTLSGSVENGLLTASMKQAKMPYETVFRAPLEIAD GQATISWLNNNKGFQLDGRNIDVKAKAVHARGGFRYLQPANDEPWLGILAGISTDDGS QAWRYFPENLMGKDLVDYLSGAIQGGEADNATLVYGGNPQLFPYKHNEGQFEVLVPLR NAKFAFQPDWPALTNLDIELDFINDGLWMKTDGVNLGGVRASNLTAVIPDYSKEKLLI DADIKGPGKAVGPYFDETPLKDSLGATLQELQLDGDVNARLHLDIPLNGELVTAKGEV TLRNNSLFIKPLDSTLKNLSGKFSFINSDLQSEPLTASWFNQPLNVDFSTKEGAKAYQ VAVNLNGNWQPAKTGVLPEAVNEALSGSVAWDGKVGIDLPYHAGATYNIELNGDLKNV SSHLPSPLAKPAGEPLAVNVKVDGNLNSFELTGQAGADNHFNSRWLLGQKLTLDRAIW AADSKTLPPLPEQSGVELNMPPMNGAEWLALFQKGAAESVGGAASFPQHITLRTPMLS LGNQQWNNLSIVSQPTANGTLVEAQGREINATLAMRNNAPWLANIKYLYYNPSVAKTR GDSTPSSPFPTTERINFRGWPDAQIRCTECWFWGQKFGRIDSDITISGDTLTLTNGLI DTGFSRLTADGEWVNNPGNERTSLKGKLRGQKIDAAAEFFGVTTPIRQSSFNVDYDLH WRKAPWQPDEATLNGIIHTQLGKGEITEINTGHAGQLLRLLSVDALMRKLRFDFRDTF GEGFYFDSIRSTAWIKDGVMHTDDTLVDGLEADIAMKGSVNLVRRDLNMEAVVAPEIS ATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYHISGPLDDPQINEVLRQPRK EKAQ" gene complement(3396326..3397795) /gene="rng" /locus_tag="b3247" /gene_synonym="adhR; cafA; ECK3235; JW3216; yhdF" /db_xref="EcoGene:EG11299" /db_xref="GeneID:947744" CDS complement(3396326..3397795) /gene="rng" /locus_tag="b3247" /gene_synonym="adhR; cafA; ECK3235; JW3216; yhdF" /EC_number="3.1.4.-" /function="structural component; Cell division" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="ribonuclease G" /protein_id="NP_417713.2" /db_xref="GI:90111563" /db_xref="ASAP:ABE-0010651" /db_xref="UniProtKB/Swiss-Prot:P0A9J0" /db_xref="EcoGene:EG11299" /db_xref="GeneID:947744" /translation="MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKG RVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQD LMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAE YCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQR VLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEI QRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQ LRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKR TRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE ALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVMM" gene complement(3397785..3398378) /gene="yhdE" /locus_tag="b3248" /gene_synonym="ECK3236; JW3217; maf" /db_xref="EcoGene:EG11298" /db_xref="GeneID:947753" CDS complement(3397785..3398378) /gene="yhdE" /locus_tag="b3248" /gene_synonym="ECK3236; JW3217; maf" /codon_start=1 /transl_table=11 /product="dTTP/UTP pyrophosphatase; m(5)UTP/m(5)CTP/pseudo-UTP pyrophosphatase" /protein_id="NP_417714.1" /db_xref="GI:16131136" /db_xref="ASAP:ABE-0010653" /db_xref="UniProtKB/Swiss-Prot:P25536" /db_xref="EcoGene:EG11298" /db_xref="GeneID:947753" /translation="MTSLYLASGSPRRQELLAQLGVTFERIVTGIEEQRQPQESAQQY VVRLAREKARAGVAQTAKDLPVLGADTIVILNGEVLEKPRDAEHAAQMLRKLSGQTHQ VMTAVALADSQHILDCLVVTDVTFRTLTDEDIAGYVASDEPLDKAGAYGIQGLGGCFV RKINGSYHAVVGLPLVETYELLSNFNALREKRDKHDG" gene complement(3398387..3398875) /gene="mreD" /locus_tag="b3249" /gene_synonym="ECK3237; JW3218" /db_xref="EcoGene:EG10610" /db_xref="GeneID:947756" CDS complement(3398387..3398875) /gene="mreD" /locus_tag="b3249" /gene_synonym="ECK3237; JW3218" /function="structural component; Murein sacculus, peptidoglycan" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /note="rod shape-determining protein" /codon_start=1 /transl_table=11 /product="cell wall structural complex MreBCD transmembrane component MreD" /protein_id="NP_417715.1" /db_xref="GI:16131137" /db_xref="ASAP:ABE-0010656" /db_xref="UniProtKB/Swiss-Prot:P0ABH4" /db_xref="EcoGene:EG10610" /db_xref="GeneID:947756" /translation="MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILL YWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQ QALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFA VQ" gene complement(3398875..3399978) /gene="mreC" /locus_tag="b3250" /gene_synonym="ECK3238; JW3219" /db_xref="EcoGene:EG10609" /db_xref="GeneID:947655" CDS complement(3398875..3399978) /gene="mreC" /locus_tag="b3250" /gene_synonym="ECK3238; JW3219" /function="structural component; Murein sacculus, peptidoglycan" /GO_component="GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0009252 - peptidoglycan biosynthetic process" /note="rod shape-determining protein" /codon_start=1 /transl_table=11 /product="cell wall structural complex MreBCD transmembrane component MreC" /protein_id="NP_417716.1" /db_xref="GI:16131138" /db_xref="ASAP:ABE-0010658" /db_xref="UniProtKB/Swiss-Prot:P16926" /db_xref="EcoGene:EG10609" /db_xref="GeneID:947655" /translation="MKPIFSRGPSLQIRLILAVLVALGIIIADSRLGTFSQIRTYMDT AVSPFYFVSNAPRELLDGVSQTLASRDQLELENRALRQELLLKNSELLMLGQYKQENA RLRELLGSPLRQDEQKMVTQVISTVNDPYSDQVVIDKGSVNGVYEGQPVISDKGVVGQ VVAVAKLTSRVLLICDATHALPIQVLRNDIRVIAAGNGCTDDLQLEHLPANTDIRVGD VLVTSGLGGRFPEGYPVAVVSSVKLDTQRAYTVIQARPTAGLQRLRYLLLLWGADRNG ANPMTPEEVHRVANERLMQMMPQVLPSPDAMGPKLPEPATGIAQPTPQQPATGNAATA PAAPTQPAANRSPQRATPPQSGAQPPARAPGGQ" gene complement(3400044..3401087) /gene="mreB" /locus_tag="b3251" /gene_synonym="ECK3239; envB; JW3220; mon; rodY" /db_xref="EcoGene:EG10608" /db_xref="GeneID:948588" CDS complement(3400044..3401087) /gene="mreB" /locus_tag="b3251" /gene_synonym="ECK3239; envB; JW3220; mon; rodY" /function="phenotype; Cell division" /experiment="N-terminus verified by Edman degradation: PMID 3049542,9298646" /GO_process="GO:0042493 - response to drug" /note="regulator of ftsI, penicillin binding protein 3, septation function" /codon_start=1 /transl_table=11 /product="cell wall structural complex MreBCD, actin-like component MreB" /protein_id="NP_417717.2" /db_xref="GI:90111564" /db_xref="ASAP:ABE-0010661" /db_xref="UniProtKB/Swiss-Prot:P0A9X4" /db_xref="EcoGene:EG10608" /db_xref="GeneID:948588" /translation="MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQD RAGSPKSVAAVGHDAKQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNS FMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATG SMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERI KHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALE QCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALE MIDMHGGDLFSEE" gene complement(3401392..3403332) /gene="csrD" /locus_tag="b3252" /gene_synonym="ECK3240; JW3221; yhdA" /db_xref="EcoGene:EG10018" /db_xref="GeneID:947702" CDS complement(3401392..3403332) /gene="csrD" /locus_tag="b3252" /gene_synonym="ECK3240; JW3221; yhdA" /codon_start=1 /transl_table=11 /product="targeting factor for csrBC sRNA degradation" /protein_id="NP_417718.1" /db_xref="GI:16131140" /db_xref="ASAP:ABE-0010663" /db_xref="UniProtKB/Swiss-Prot:P13518" /db_xref="EcoGene:EG10018" /db_xref="GeneID:947702" /translation="MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQA VATAIDTHLVSNDFSVLRPQITELMMSADIVRVDLLHGDKQVYTLARNGSYRPVGSSD LFRELSVPLIKHPGMSLRLVYQDPMGNYFHSLMTTAPLTGAIGFIIVMLFLAVRWLQR QLAGQELLETRATRILNGERGSNVLGTIYEWPPRTSSALDTLLREIQNAREQHSRLDT LIRSYAAQDVKTGLNNRLFFDNQLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHS QVEEQFFTLTNLLSTFMMRYPGALLARYHRSDFAALLPHRTLKEAESIAGQLIKAVDT LPNNKMLDRDDMIHIGICAWRSGQDTEQVMEHAESATRNAGLQGGNSWAIYDDSLPEK GRGNVRWRTLIEQMLSRGGPRLYQKPAVTREGQVHHRELMCRIFDGNEEVSSAEYMPM VLQFGLSEEYDRLQISRLIPLLRYWPEENLAIQVTVESLIRPRFQRWLRDTLMQCEKS QRKRIIIELAEADVGQHISRLQPVIRLVNALGVRVAVNQAGLTLVSTSWIKELNVELL KLHPGLVRNIEKRTENQLLVQSLVEACSGTSTQVYATGVRSRSEWQTLIQRGVTGGQG DFFASSQPLDTNVKKYSQRYSV" gene 3403484..3404458 /gene="acuI" /locus_tag="b3253" /gene_synonym="ECK3241; JW3222; yhdH" /db_xref="EcoGene:EG11315" /db_xref="GeneID:947848" CDS 3403484..3404458 /gene="acuI" /locus_tag="b3253" /gene_synonym="ECK3241; JW3222; yhdH" /function="putative enzyme; Not classified" /note="putative dehydrogenase" /codon_start=1 /transl_table=11 /product="putative acryloyl-CoA reductase" /protein_id="NP_417719.1" /db_xref="GI:16131141" /db_xref="ASAP:ABE-0010667" /db_xref="UniProtKB/Swiss-Prot:P26646" /db_xref="EcoGene:EG11315" /db_xref="GeneID:947848" /translation="MQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDA LAITGKGKIIRNFPMIPGIDFAGTVRTSEDPRFHAGQEVLLTGWGVGENHWGGLAEQA RVKGDWLVAMPQGLDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVG STAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDT VGDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDSVMTPPERRA QAWQRLVADLPESFYTQAAKEISLSEAPNFAEAIINNQIQGRTLVKVN" gene 3404495..3404637 /gene="yrdF" /locus_tag="b4697" /gene_synonym="ECK4509" /pseudo /db_xref="EcoGene:EG14497" /db_xref="GeneID:7751640" CDS 3404495..3404637 /gene="yrdF" /locus_tag="b4697" /gene_synonym="ECK4509" /note="pseudogene, conserved protein" /pseudo /codon_start=1 /transl_table=11 /db_xref="EcoGene:EG14497" /db_xref="GeneID:7751640" gene 3404638..3405031 /gene="yrdE" /locus_tag="b4646" /gene_synonym="ECK4442" /pseudo /db_xref="EcoGene:EG14352" /db_xref="GeneID:5625572" CDS join(3404638..3404733,3404732..3405031) /gene="yrdE" /locus_tag="b4646" /gene_synonym="ECK4442" /note="pseudogene, yedZ paralog" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0285243" /db_xref="EcoGene:EG14352" /db_xref="GeneID:5625572" gene 3405436..3405906 /gene="accB" /locus_tag="b3255" /gene_synonym="ECK3242; fabE; JW3223" /db_xref="EcoGene:EG10275" /db_xref="GeneID:947758" CDS 3405436..3405906 /gene="accB" /locus_tag="b3255" /gene_synonym="ECK3242; fabE; JW3223" /function="carrier; Biosynthesis of cofactors, carriers: biotin carboxyl carrier protein (BCCP)" /experiment="N-terminus verified by Edman degradation: PMID 1370469,9740056" /GO_process="GO:0042966 - biotin carboxyl carrier protein biosynthetic process" /note="acetylCoA carboxylase, BCCP subunit; carrier of biotin" /codon_start=1 /transl_table=11 /product="acetyl CoA carboxylase, BCCP subunit" /protein_id="NP_417721.1" /db_xref="GI:16131143" /db_xref="ASAP:ABE-0010675" /db_xref="UniProtKB/Swiss-Prot:P0ABD8" /db_xref="EcoGene:EG10275" /db_xref="GeneID:947758" /translation="MDIRKIKKLIELVEESGISELEISEGEESVRISRAAPAASFPVM QQAYAAPMMQQPAQSNAAAPATVPSMEAPAAAEISGHIVRSPMVGTFYRTPSPDAKAF IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE" gene 3405917..3407266 /gene="accC" /locus_tag="b3256" /gene_synonym="ECK3243; fabG; JW3224" /db_xref="EcoGene:EG10276" /db_xref="GeneID:947761" CDS 3405917..3407266 /gene="accC" /locus_tag="b3256" /gene_synonym="ECK3243; fabG; JW3224" /EC_number="6.3.4.14" /function="enzyme; Fatty acid and phosphatidic acid biosynthesis" /experiment="N-terminus verified by Edman degradation: PMID 1370469,1682920,9298646" /GO_component="GO:0005737 - cytoplasm" /note="acetyl CoA carboxylase, biotin carboxylase subunit" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase, biotin carboxylase subunit" /protein_id="NP_417722.1" /db_xref="GI:16131144" /db_xref="ASAP:ABE-0010677" /db_xref="UniProtKB/Swiss-Prot:P24182" /db_xref="EcoGene:EG10276" /db_xref="GeneID:947761" /translation="MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLL ADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIF IGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKA SGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADG QGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFE FLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHA VECRINAEDPNTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYG ENRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGLQEK" gene 3407375..3407617 /gene="yhdT" /locus_tag="b3257" /gene_synonym="ECK3244; JW3225" /db_xref="EcoGene:EG12831" /db_xref="GeneID:947762" CDS 3407375..3407617 /gene="yhdT" /locus_tag="b3257" /gene_synonym="ECK3244; JW3225" /codon_start=1 /transl_table=11 /product="DUF997 family putative inner membrane protein" /protein_id="NP_417723.1" /db_xref="GI:16131145" /db_xref="ASAP:ABE-0010690" /db_xref="UniProtKB/Swiss-Prot:P45566" /db_xref="EcoGene:EG12831" /db_xref="GeneID:947762" /translation="MDTRFVQAHKEARWALGLTLLYLAVWLVAAYLSGVAPGFTGFPR WFEMACILTPLLFIGLCWAMVKFIYRDIPLEDDDAA" gene 3407607..3409058 /gene="panF" /locus_tag="b3258" /gene_synonym="ECK3245; JW3226" /db_xref="EcoGene:EG10685" /db_xref="GeneID:947752" CDS 3407607..3409058 /gene="panF" /locus_tag="b3258" /gene_synonym="ECK3245; JW3226" /function="transport; Transport of small molecules: Cations" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0015937 - coenzyme A biosynthetic process" /note="sodium/pantothenate symporter" /codon_start=1 /transl_table=11 /product="pantothenate:sodium symporter" /protein_id="NP_417724.4" /db_xref="GI:90111565" /db_xref="ASAP:ABE-0010695" /db_xref="UniProtKB/Swiss-Prot:P16256" /db_xref="EcoGene:EG10685" /db_xref="GeneID:947752" /translation="MQLEVILPLVAYLVVVFGISVYAMRKRSTGTFLNEYFLGSRSMG GIVLAMTLTATYISASSFIGGPGAAYKYGLGWVLLAMIQLPAVWLSLGILGKKFAILA RRYNAVTLNDMLFARYQSRLLVWLASLSLLVAFVGAMTVQFIGGARLLETAAGIPYET GLLIFGISIALYTAFGGFRASVLNDTMQGLVMLIGTVVLLIGVVHAAGGLSNAVQTLQ TIDPQLVTPQGADDILSPAFMTSFWVLVCFGVIGLPHTAVRCISYKDSKAVHRGIIIG TIVVAILMFGMHLAGALGRAVIPDLTVPDLVIPTLMVKVLPPFAAGIFLAAPMAAIMS TINAQLLQSSATIIKDLYLNIRPDQMQNETRLKRMSAVITLVLGALLLLAAWKPPEMI IWLNLLAFGGLEAVFLWPLVLGLYWERANAKGALSAMIVGGVLYAVLATLNIQYLGFH PIVPSLLLSLLAFLVGNRFGTSVPQATVLTTDK" gene 3409070..3409951 /gene="prmA" /locus_tag="b3259" /gene_synonym="ECK3246; JW3227; prm-1; yhdI" /db_xref="EcoGene:EG11497" /db_xref="GeneID:947708" CDS 3409070..3409951 /gene="prmA" /locus_tag="b3259" /gene_synonym="ECK3246; JW3227; prm-1; yhdI" /EC_number="2.1.1.-" /function="enzyme; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="methyltransferase for 50S ribosomal subunit protein L11" /protein_id="NP_417725.1" /db_xref="GI:16131147" /db_xref="ASAP:ABE-0010697" /db_xref="UniProtKB/Swiss-Prot:P0A8T1" /db_xref="EcoGene:EG11497" /db_xref="GeneID:947708" /translation="MPWIQLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPL PGETRLWGDTDVIGLFDAETDMNDVVAILENHPLLGAGFAHKIEQLEDKDWEREWMDN FHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLTGK TVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAERNGVSDRLELYLPKDQ PEEMKADVVVANILAGPLRELAPLISVLPVSGGLLGLSGILASQAESVCEAYADSFAL DPVVEKEEWCRITGRKN" gene 3410280..3411245 /gene="dusB" /locus_tag="b3260" /gene_synonym="ECK3247; JW3228; yhdG" /db_xref="EcoGene:EG11311" /db_xref="GeneID:947707" CDS 3410280..3411245 /gene="dusB" /locus_tag="b3260" /gene_synonym="ECK3247; JW3228; yhdG" /function="enzyme; tRNA modification" /note="putative dehydrogenase" /codon_start=1 /transl_table=11 /product="tRNA-dihydrouridine synthase B" /protein_id="NP_417726.1" /db_xref="GI:16131148" /db_xref="ASAP:ABE-0010700" /db_xref="UniProtKB/Swiss-Prot:P0ABT5" /db_xref="EcoGene:EG11311" /db_xref="GeneID:947707" /translation="MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSS NPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPA KKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAED CGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGA DALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGY RIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENFA" gene 3411271..3411567 /gene="fis" /locus_tag="b3261" /gene_synonym="ECK3248; JW3229; nbp" /db_xref="EcoGene:EG10317" /db_xref="GeneID:947697" CDS 3411271..3411567 /gene="fis" /locus_tag="b3261" /gene_synonym="ECK3248; JW3229; nbp" /function="factor; DNA - replication, repair, restriction/modification" /experiment="N-terminus verified by Edman degradation: PMID 2835774,2837762,8809757" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006310 - DNA recombination" /note="site-specific DNA inversion stimulation factor; DNA-binding protein; a trans activator for transcription" /codon_start=1 /transl_table=11 /product="global DNA-binding transcriptional dual regulator" /protein_id="NP_417727.1" /db_xref="GI:16131149" /db_xref="ASAP:ABE-0010703" /db_xref="UniProtKB/Swiss-Prot:P0A6R3" /db_xref="EcoGene:EG10317" /db_xref="GeneID:947697" /translation="MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNG QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN" gene 3411653..3412537 /gene="yhdJ" /locus_tag="b3262" /gene_synonym="ccrM; ECK3249; JW5543" /db_xref="EcoGene:EG11498" /db_xref="GeneID:947695" CDS 3411653..3412537 /gene="yhdJ" /locus_tag="b3262" /gene_synonym="ccrM; ECK3249; JW5543" /function="putative enzyme; Not classified" /note="putative methyltransferase" /codon_start=1 /transl_table=11 /product="DNA adenine methyltransferase, SAM-dependent" /protein_id="NP_417728.4" /db_xref="GI:90111566" /db_xref="ASAP:ABE-0010706" /db_xref="UniProtKB/Swiss-Prot:P28638" /db_xref="EcoGene:EG11498" /db_xref="GeneID:947695" /translation="MRTGCEPTRFGNEAKTIIHGDALAELKKIPAESVDLIFADPPYN IGKNFDGLIEAWKEDLFIDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKLF TIKSRIVWSYDSSGVQAKKHYGSMYEPILMMVKDAKNYTFNGDAILVEAKTGSQRALI DYRKNPPQPYNHQKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIV LDPFAGSFTTGAVAIASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTG NLSKRSRLSEVDPDLITK" gene 3412621..3412800 /gene="yhdU" /locus_tag="b3263" /gene_synonym="ECK3250; JW3231" /db_xref="EcoGene:EG12832" /db_xref="GeneID:947700" CDS 3412621..3412800 /gene="yhdU" /locus_tag="b3263" /gene_synonym="ECK3250; JW3231" /codon_start=1 /transl_table=11 /product="putative membrane protein" /protein_id="NP_417729.1" /db_xref="GI:16131151" /db_xref="ASAP:ABE-0010710" /db_xref="UniProtKB/Swiss-Prot:P64619" /db_xref="EcoGene:EG12832" /db_xref="GeneID:947700" /translation="MIRKYWWLVVFAVFVFLFDTLLMQWIELLATETDKCRNMNSVNP LKLVNCDELNFQDRM" gene complement(3412803..3413465) /gene="acrS" /locus_tag="b3264" /gene_synonym="ECK3251; envR; JW3232; yhdK" /db_xref="EcoGene:EG11741" /db_xref="GeneID:947704" CDS complement(3412803..3413465) /gene="acrS" /locus_tag="b3264" /gene_synonym="ECK3251; envR; JW3232; yhdK" /function="regulator; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016564 - transcription repressor activity" /GO_process="GO:0042493 - response to drug; GO:0006350 - transcription" /note="putative transcriptional regulator" /codon_start=1 /transl_table=11 /product="acrAB operon transcriptional repressor" /protein_id="NP_417730.1" /db_xref="GI:16131152" /db_xref="ASAP:ABE-0010712" /db_xref="UniProtKB/Swiss-Prot:P0ACT2" /db_xref="EcoGene:EG11741" /db_xref="GeneID:947704" /translation="MAKRTKAEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVT RGAIYWHFENKTQLFNEMWLQQPSLRELIQEHLTAGLEHDPFQQLREKLIVGLQYIAK IPRQQALLKILYHKCEFNDEMLAEGVIREKMGFNPQTLREVLQACQQQGCVANNLDLD VVMIIIDGAFSGIVQNWLMNMAGYDLYKQAPALVDNVLRMFMPDENITKLIHQTNELS VM" gene 3413864..3415021 /gene="acrE" /locus_tag="b3265" /gene_synonym="ECK3252; envC; JW3233" /db_xref="EcoGene:EG10266" /db_xref="GeneID:947706" CDS 3413864..3415021 /gene="acrE" /locus_tag="b3265" /gene_synonym="ECK3252; envC; JW3233" /function="membrane; Inner membrane" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="transmembrane protein affects septum formation and cell membrane permeability" /codon_start=1 /transl_table=11 /product="cytoplasmic membrane lipoprotein" /protein_id="NP_417731.1" /db_xref="GI:16131153" /db_xref="ASAP:ABE-0010722" /db_xref="UniProtKB/Swiss-Prot:P24180" /db_xref="EcoGene:EG10266" /db_xref="GeneID:947706" /translation="MTKHARFFLLPSFILISAALIAGCNDKGEEKAHVGEPQVTVHIV KTAPLEVKTELPGRTNAYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQA NYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVIAAK ATVESARINLAYTKVTAPISGRIGKSTVTEGALVTNGQTTELATVQQLDPIYVDVTQS SNDFMRLKQSVEQGNLHKENATSNVELVMENGQTYPLKGTLQFSDVTVDESTGSITLR AVFPNPQHTLLPGMFVRARIDEGVQPDAILIPQQGVSRTPRGDATVLIVNDKSQVEAR PVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPGEQVKATTDTPADTASK" gene 3415033..3418137 /gene="acrF" /locus_tag="b3266" /gene_synonym="ECK3253; envD; JW3234" /db_xref="EcoGene:EG10267" /db_xref="GeneID:947768" CDS 3415033..3418137 /gene="acrF" /locus_tag="b3266" /gene_synonym="ECK3253; envD; JW3234" /function="membrane; Drug/analog sensitivity" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /GO_process="GO:0042493 - response to drug" /note="integral transmembrane protein; acridine resistance" /codon_start=1 /transl_table=11 /product="multidrug efflux system protein" /protein_id="NP_417732.1" /db_xref="GI:16131154" /db_xref="ASAP:ABE-0010724" /db_xref="UniProtKB/Swiss-Prot:P24181" /db_xref="EcoGene:EG10267" /db_xref="GeneID:947768" /translation="MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVS VSANYPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDI AQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVAS NVKDTLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQ LGGTPALPGQQLNASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYN VIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINT LTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLS AVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENK GGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEE DQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAG MAFVSLKPWEERNGDENSAEAVIHRAKMELGKIRDGFVIPFNMPAIVELGTATGFDFE LIDQAGLGHDALTQARNQLLGMAAQHPASLVSVRPNGLEDTAQFKLEVDQEKAQALGV SLSDINQTISTALGGTYVNDFIDRGRVKKLYVQADAKFRMLPEDVDKLYVRSANGEMV PFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGTSSGDAMALMENLASKLPAGIGY DWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEATLMAVRMRLR PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFVPVFFVVIRR CFKG" gene 3418390..3418611 /gene="yhdV" /locus_tag="b3267" /gene_synonym="ECK3254; JW3235" /db_xref="EcoGene:EG12833" /db_xref="GeneID:947767" CDS 3418390..3418611 /gene="yhdV" /locus_tag="b3267" /gene_synonym="ECK3254; JW3235" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_417733.1" /db_xref="GI:16131155" /db_xref="ASAP:ABE-0010728" /db_xref="UniProtKB/Swiss-Prot:P64622" /db_xref="EcoGene:EG12833" /db_xref="GeneID:947767" /translation="MKRLIPVALLTALLAGCAHDSPCVPVYDDQGRLVHTNTCMKGTT QDNWETAGAIAGGAAAVAGLTMGIIALSK" gene 3419042..3420066 /gene="yhdW" /locus_tag="b3268" /gene_synonym="ECK3255; JW3236" /pseudo /db_xref="EcoGene:EG12834" /db_xref="GeneID:947766" CDS join(3419042..3419107,3419107..3420066) /gene="yhdW" /locus_tag="b3268" /gene_synonym="ECK3255; JW3236" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0009063 - cellular amino acid catabolic process" /note="pseudogene, ABC transporter periplasmic binding protein family;putative transport; Not classified; putative periplasmic binding transport protein; periplasmic-binding component of ABC superfamily" /pseudo /codon_start=1 /transl_table=11 /db_xref="ASAP:ABE-0010731" /db_xref="UniProtKB/Swiss-Prot:P45766" /db_xref="EcoGene:EG12834" /db_xref="GeneID:947766" gene 3420134..3421315 /gene="yhdX" /locus_tag="b3269" /gene_synonym="ECK3256; JW5544" /db_xref="EcoGene:EG12835" /db_xref="GeneID:947765" CDS 3420134..3421315 /gene="yhdX" /locus_tag="b3269" /gene_synonym="ECK3256; JW5544" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport system permease protein; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="putative amino acid ABC transporter permease" /protein_id="YP_026209.1" /db_xref="GI:49176333" /db_xref="ASAP:ABE-0010733" /db_xref="UniProtKB/Swiss-Prot:P45767" /db_xref="EcoGene:EG12835" /db_xref="GeneID:947765" /translation="MSHRRSTVKGSLSFANPTVRAWLFQILAVVAVVGIVGWLFHNTV TNLNNRGITSGFAFLDRGAGFGIVQHLIDYQQGDTYGRVFIVGLLNTLLVSALCIVFA SVLGFFIGLARLSDNWLLRKLSTIYIEIFRNIPPLLQIFFWYFAVLRNLPGPRQAVSA FDLAFLSNRGLYIPSPQLGDGFIAFILAVVMAIVLSVGLFRFNKTYQIKTGQLRRTWP IAAVLIIGLPLLAQWLFGAALHWDVPALRGFNFRGGMVLIPELAALTLALSVYTSAFI AEIIRAGIQAVPYGQHEAARSLGLPNPVTLRQVIIPQALRVIIPPLTSQYLNIVKNSS LAAAIGYPDMVSLFAGTVLNQTGQAIETIAMTMSVYLIISLTISLLMNIYNRRIAIVE R" gene 3421325..3422428 /gene="yhdY" /locus_tag="b3270" /gene_synonym="ECK3257; JW5545" /db_xref="EcoGene:EG12836" /db_xref="GeneID:947764" CDS 3421325..3422428 /gene="yhdY" /locus_tag="b3270" /gene_synonym="ECK3257; JW5545" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative transport system permease protein; membrane component of ABC superfamily" /codon_start=1 /transl_table=11 /product="putative amino acid ABC transporter permease" /protein_id="NP_417736.2" /db_xref="GI:90111567" /db_xref="ASAP:ABE-0010736" /db_xref="UniProtKB/Swiss-Prot:P45768" /db_xref="EcoGene:EG12836" /db_xref="GeneID:947764" /translation="MTKVLLSHPPRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWL MWELIPPLLNWAFLQANWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINL ALLIGLVSIAPMFWKILPHRGRYIAAWAVIYPLIVWWLMYGGFFALERVETRQWGGLT LTLIIASVGIAGALPWGILLALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVML PLFMAEGTSIDKLIRALVGVILFQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQ GLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEG YVFAALIYWIFCFSMSRYSQYLEKRFNTGRTPH" gene 3422436..3423194 /gene="yhdZ" /locus_tag="b3271" /gene_synonym="ECK3258; JW3239" /db_xref="EcoGene:EG12837" /db_xref="GeneID:947763" CDS 3422436..3423194 /gene="yhdZ" /locus_tag="b3271" /gene_synonym="ECK3258; JW3239" /function="putative transport; Not classified" /GO_component="GO:0005737 - cytoplasm" /note="putative ATP-binding component of a transport system; ATP-binding component of ABC superfamily" /codon_start=1 /transl_table=11 /product="putative amino acid ABC transporter ATPase" /protein_id="NP_417737.1" /db_xref="GI:16131159" /db_xref="ASAP:ABE-0010738" /db_xref="UniProtKB/Swiss-Prot:P45769" /db_xref="EcoGene:EG12837" /db_xref="GeneID:947763" /translation="MSQILLQPANAMITLENVNKWYGQFHVLKNINLTVQPGERIVLC GPSGSGKSTTIRCINHLEEHQQGRIVVDGIELNEDIRNIERVRQEVGMVFQHFNLFPH LTVLQNCTLAPIWVRKMPKKEAEDLAVHYLERVRIAEHAHKFPGQISGGQQQRVAIAR SLCMKPKIMLFDEPTSALDPEMVKEVLDTMIGLAQSGMTMLCVTHEMGFARTVADRVI FMDRGEIVEQAAPDEFFAHPKSERTRAFLSQVIH" gene complement(3423423..3423542) /gene="rrfF" /locus_tag="b3272" /gene_synonym="ECK3259; JWR0073; rrfDbeta; rrvD" /db_xref="EcoGene:EG30091" /db_xref="GeneID:947771" rRNA complement(3423423..3423542) /gene="rrfF" /locus_tag="b3272" /gene_synonym="ECK3259; JWR0073; rrfDbeta; rrvD" /product="5S ribosomal RNA of rrnD operon" /db_xref="ASAP:ABE-0010740" /db_xref="EcoGene:EG30091" /db_xref="GeneID:947771" gene complement(3423580..3423655) /gene="thrV" /locus_tag="b3273" /gene_synonym="ECK3260; JWR0074" /db_xref="EcoGene:EG30103" /db_xref="GeneID:947770" tRNA complement(3423580..3423655) /gene="thrV" /locus_tag="b3273" /gene_synonym="ECK3260; JWR0074" /product="tRNA-Thr" /note="anticodon: GGU" /db_xref="ASAP:ABE-0010742" /db_xref="EcoGene:EG30103" /db_xref="GeneID:947770" gene complement(3423668..3423787) /gene="rrfD" /locus_tag="b3274" /gene_synonym="ECK3261; JWR0075" /db_xref="EcoGene:EG30073" /db_xref="GeneID:947769" rRNA complement(3423668..3423787) /gene="rrfD" /locus_tag="b3274" /gene_synonym="ECK3261; JWR0075" /product="5S ribosomal RNA of rrnD operon" /db_xref="ASAP:ABE-0010744" /db_xref="EcoGene:EG30073" /db_xref="GeneID:947769" gene complement(3423880..3426783) /gene="rrlD" /locus_tag="b3275" /gene_synonym="ECK3262; JWR0076" /db_xref="EcoGene:EG30080" /db_xref="GeneID:947773" rRNA complement(3423880..3426783) /gene="rrlD" /locus_tag="b3275" /gene_synonym="ECK3262; JWR0076" /product="23S ribosomal RNA of rrnD operon" /db_xref="ASAP:ABE-0010746" /db_xref="EcoGene:EG30080" /db_xref="GeneID:947773" gene complement(3426958..3427033) /gene="alaU" /locus_tag="b3276" /gene_synonym="ECK3263; JWR0077; talD" /db_xref="EcoGene:EG30009" /db_xref="GeneID:947772" tRNA complement(3426958..3427033) /gene="alaU" /locus_tag="b3276" /gene_synonym="ECK3263; JWR0077; talD" /product="tRNA-Ala" /note="anticodon: UGC" /db_xref="ASAP:ABE-0010748" /db_xref="EcoGene:EG30009" /db_xref="GeneID:947772" gene complement(3427076..3427152) /gene="ileU" /locus_tag="b3277" /gene_synonym="ECK3264; JWR0078; tilD" /db_xref="EcoGene:EG30044" /db_xref="GeneID:947778" tRNA complement(3427076..3427152) /gene="ileU" /locus_tag="b3277" /gene_synonym="ECK3264; JWR0078; tilD" /product="tRNA-Ile" /note="anticodon: GAU" /db_xref="ASAP:ABE-0010750" /db_xref="EcoGene:EG30044" /db_xref="GeneID:947778" gene complement(3427221..3428762) /gene="rrsD" /locus_tag="b3278" /gene_synonym="ECK3265; JWR0079" /db_xref="EcoGene:EG30087" /db_xref="GeneID:947777" rRNA complement(3427221..3428762) /gene="rrsD" /locus_tag="b3278" /gene_synonym="ECK3265; JWR0079" /product="16S ribosomal RNA of rrnD operon" /db_xref="ASAP:ABE-0010753" /db_xref="EcoGene:EG30087" /db_xref="GeneID:947777" gene 3429236..3429790 /gene="yrdA" /locus_tag="b3279" /gene_synonym="ECK3266; JW5710" /db_xref="EcoGene:EG12838" /db_xref="GeneID:947775" CDS 3429236..3429790 /gene="yrdA" /locus_tag="b3279" /gene_synonym="ECK3266; JW5710" /function="putative enzyme; Not classified" /note="putative transferase" /codon_start=1 /transl_table=11 /product="bacterial transferase hexapeptide domain protein" /protein_id="NP_417738.4" /db_xref="GI:90111568" /db_xref="ASAP:ABE-0010759" /db_xref="UniProtKB/Swiss-Prot:P0A9W9" /db_xref="EcoGene:EG12838" /db_xref="GeneID:947775" /translation="MSDVLRPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVV IRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGN RVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAG LRYSANNYVKWKDEYLDQGNQTQP" gene complement(3429766..3430023) /gene="yrdB" /locus_tag="b3280" /gene_synonym="ECK3267; JW3241" /db_xref="EcoGene:EG12839" /db_xref="GeneID:947774" CDS complement(3429766..3430023) /gene="yrdB" /locus_tag="b3280" /gene_synonym="ECK3267; JW3241" /codon_start=1 /transl_table=11 /product="DUF1488 family protein" /protein_id="NP_417739.1" /db_xref="GI:16131161" /db_xref="ASAP:ABE-0010761" /db_xref="UniProtKB/Swiss-Prot:P45795" /db_xref="EcoGene:EG12839" /db_xref="GeneID:947774" /translation="MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRF TGDTPEQWLASFRQHRWDLEEEAENLIQEQSEDDQGWVWLP" gene complement(3430020..3430838) /gene="aroE" /locus_tag="b3281" /gene_synonym="ECK3268; JW3242" /db_xref="EcoGene:EG10077" /db_xref="GeneID:947776" CDS complement(3430020..3430838) /gene="aroE" /locus_tag="b3281" /gene_synonym="ECK3268; JW3242" /EC_number="1.1.1.25" /function="enzyme; Amino acid biosynthesis: Chorismate" /experiment="N-terminus verified by Edman degradation: PMID 3277621" /GO_process="GO:0009423 - chorismate biosynthetic process" /note="dehydroshikimate reductase" /codon_start=1 /transl_table=11 /product="dehydroshikimate reductase, NAD(P)-binding" /protein_id="NP_417740.1" /db_xref="GI:16131162" /db_xref="ASAP:ABE-0010763" /db_xref="UniProtKB/Swiss-Prot:P15770" /db_xref="EcoGene:EG10077" /db_xref="GeneID:947776" /translation="METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFI NTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLMRLEDGRLLGDNTD GVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAK LFAHTGSIQALSMDELEGHEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKG KTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEELSA" gene complement(3430843..3431415) /gene="tsaC" /locus_tag="b3282" /gene_synonym="ECK3269; JW3243; rimN; yrdC" /db_xref="EcoGene:EG12840" /db_xref="GeneID:947783" CDS complement(3430843..3431415) /gene="tsaC" /locus_tag="b3282" /gene_synonym="ECK3269; JW3243; rimN; yrdC" /function="enzyme; tRNA modification" /codon_start=1 /transl_table=11 /product="tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein, threonine-dependent ADP-forming ATPase" /protein_id="NP_417741.1" /db_xref="GI:16131163" /db_xref="ASAP:ABE-0010766" /db_xref="UniProtKB/Swiss-Prot:P45748" /db_xref="EcoGene:EG12840" /db_xref="GeneID:947783" /translation="MNNNLQRDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVM RLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDVQRETIFSRWPGPVTFVFPAPAT TPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVRAQFGA AFPVVPGETGGRLNPSEIRDALTGELFRQG" gene complement(3431420..3431962) /gene="yrdD" /locus_tag="b3283" /gene_synonym="ECK3270; JW5949" /db_xref="EcoGene:EG12841" /db_xref="GeneID:947782" CDS complement(3431420..3431962) /gene="yrdD" /locus_tag="b3283" /gene_synonym="ECK3270; JW5949" /function="putative enzyme; Not classified" /note="putative DNA topoisomerase" /codon_start=1 /transl_table=11 /product="ssDNA-binding protein, function unknown" /protein_id="YP_026210.1" /db_xref="GI:49176335" /db_xref="ASAP:ABE-0010768" /db_xref="UniProtKB/Swiss-Prot:P45771" /db_xref="EcoGene:EG12841" /db_xref="GeneID:947782" /translation="MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYV RPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCINYPECEHTELIDKPDET AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKT AQGVKHFCASKQCGKPVSAE" gene complement(3431991..3432464) /gene="smg" /locus_tag="b3284" /gene_synonym="ECK3271; JW3245" /db_xref="EcoGene:EG11605" /db_xref="GeneID:947781" CDS complement(3431991..3432464) /gene="smg" /locus_tag="b3284" /gene_synonym="ECK3271; JW3245" /codon_start=1 /transl_table=11 /product="DUF494 family putative periplasmic protein" /protein_id="NP_417743.1" /db_xref="GI:16131165" /db_xref="ASAP:ABE-0010770" /db_xref="UniProtKB/Swiss-Prot:P0A828" /db_xref="EcoGene:EG11605" /db_xref="GeneID:947781" /translation="MFDVLMYLFETYIHTEAELRVDQDKLEQDLTDAGFEREDIYNAL LWLEKLADYQEGLAEPMQLASDPLSMRIYTPEECERLDASCRGFLLFLEQIQVLNLET REMVIERVLALDNAEFELDDLKWVILMVLFNIPGCENAYQQMEELLFEVNEGMLH" gene complement(3432436..3433560) /gene="smf" /locus_tag="b4473" /gene_synonym="ECK3272; JW5708" /db_xref="EcoGene:EG11604" /db_xref="GeneID:2847708" CDS complement(3432436..3433560) /gene="smf" /locus_tag="b4473" /gene_synonym="ECK3272; JW5708" /codon_start=1 /transl_table=11 /product="DNA recombination-mediator A family protein" /protein_id="YP_026211.1" /db_xref="GI:49176336" /db_xref="ASAP:ABE-0174103" /db_xref="UniProtKB/Swiss-Prot:P30852" /db_xref="EcoGene:EG11604" /db_xref="GeneID:2847708" /translation="MVDTEIWLRLMSISSLYGDDMVRIAHWVAKQSHIDAVVLQQTGL TLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSEFYPPQLLATTDYPGALFVEGEL HALHSFQLAVVGSRAHSWYGERWGRLFCETLATRGVTITSGLARGIDGVAHKAALQVN GVSIAVLGNGLNTIHPRRHARLAASLLEQGGALVSEFPLDVPPLAYNFPRRNRIISGL SKGVLVVEAALRSGSLVTARCALEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEP EEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQP VPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV" gene 3433690..3434199 /gene="def" /locus_tag="b3287" /gene_synonym="ECK3273; fms; JW3248" /db_xref="EcoGene:EG11440" /db_xref="GeneID:947780" CDS 3433690..3434199 /gene="def" /locus_tag="b3287" /gene_synonym="ECK3273; fms; JW3248" /EC_number="3.5.1.88" /function="enzyme; Proteins - translation and modification" /GO_process="GO:0006464 - protein modification process" /codon_start=1 /transl_table=11 /product="peptide deformylase" /protein_id="NP_417745.1" /db_xref="GI:16131166" /db_xref="ASAP:ABE-0010779" /db_xref="UniProtKB/Swiss-Prot:P0A6K3" /db_xref="EcoGene:EG11440" /db_xref="GeneID:947780" /translation="MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEG IGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVP RAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVE KLDRLKARA" gene 3434214..3435161 /gene="fmt" /locus_tag="b3288" /gene_synonym="ECK3274; JW3249; yhdD" /db_xref="EcoGene:EG11268" /db_xref="GeneID:947779" CDS 3434214..3435161 /gene="fmt" /locus_tag="b3288" /gene_synonym="ECK3274; JW3249; yhdD" /EC_number="2.1.2.9" /function="enzyme; Aminoacyl tRNA synthetases, tRNA modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /codon_start=1 /transl_table=11 /product="10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase" /protein_id="NP_417746.1" /db_xref="GI:16131167" /db_xref="ASAP:ABE-0010781" /db_xref="UniProtKB/Swiss-Prot:P23882" /db_xref="EcoGene:EG11268" /db_xref="GeneID:947779" /translation="MSESLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRG KKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAELQADVMVVVAYGLILPKAVLEM PRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPIT AEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWS LSAAQLERCIRAFNPWPMSWLEIEGQPVKVWKASVIDTATNAAPGTILEANKQGIQVA TGDGILNLLSLQPAGKKAMSAQDLLNSRREWFVPGNRLV" gene 3435207..3436496 /gene="rsmB" /locus_tag="b3289" /gene_synonym="ECK3275; fmu; fmv; JW3250; rrmB; sun; yhdB" /db_xref="EcoGene:EG12163" /db_xref="GeneID:947789" CDS 3435207..3436496 /gene="rsmB" /locus_tag="b3289" /gene_synonym="ECK3275; fmu; fmv; JW3250; rrmB; sun; yhdB" /EC_number="2.1.1.61" /function="enzyme; rRNA modification" /experiment="N-terminus verified by Edman degradation: PMID 10026269" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0009451 - RNA modification" /note="16S rRNA m5C967 methyltransferase" /codon_start=1 /transl_table=11 /product="16S rRNA m(5)C967 methyltransferase, SAM-dependent" /protein_id="NP_417747.1" /db_xref="GI:16131168" /db_xref="ASAP:ABE-0010785" /db_xref="UniProtKB/Swiss-Prot:P36929" /db_xref="EcoGene:EG12163" /db_xref="GeneID:947789" /translation="MKKQRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALL QELCFGVLRTLSQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAET VEGAIAIKRPQLKGLINGVLRQFQRQQEELLAEFNASDARYLHPSWLLKRLQKAYPEQ WQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVH ALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAV DIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH PDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQR TADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIKK" gene 3436518..3437894 /gene="trkA" /locus_tag="b3290" /gene_synonym="ECK3276; JW3251; sapG" /db_xref="EcoGene:EG11019" /db_xref="GeneID:947788" CDS 3436518..3437894 /gene="trkA" /locus_tag="b3290" /gene_synonym="ECK3276; JW3251; sapG" /function="transport; Transport of small molecules: Cations" /experiment="N-terminus verified by Edman degradation: PMID 8412700" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="transport of potassium" /codon_start=1 /transl_table=11 /product="NAD-binding component of TrK potassium transporter" /protein_id="NP_417748.1" /db_xref="GI:16131169" /db_xref="ASAP:ABE-0010787" /db_xref="UniProtKB/Swiss-Prot:P0AGI8" /db_xref="EcoGene:EG11019" /db_xref="GeneID:947788" /translation="MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRTLQDKFD LRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSP DYVRDADKLFHSDAVPIDHLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKA YYGGPLIGNALSTMREHMPHIDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHI RAVMSELQRLEKPYKRIMLVGGGNIGAGLARRLEKDYSVKLIERNQQRAAELAEKLQN TIVFFGDASDQELLAEEHIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRA YVDLVQGSVIDIAISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTS RVVGRVIDEIKLPPGTIIGAVVRGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERL FQPSPFFL" gene 3438024..3438434 /gene="mscL" /locus_tag="b3291" /gene_synonym="ECK3277; JW3252; stkA; yhdC" /db_xref="EcoGene:EG11180" /db_xref="GeneID:947787" CDS 3438024..3438434 /gene="mscL" /locus_tag="b3291" /gene_synonym="ECK3277; JW3252; stkA; yhdC" /function="transport; Transport of small molecules: Other" /experiment="N-terminus verified by Edman degradation: PMID 7511799" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="mechanosensitive channel protein, high conductance" /protein_id="NP_417749.1" /db_xref="GI:16131170" /db_xref="ASAP:ABE-0010790" /db_xref="UniProtKB/Swiss-Prot:P0A742" /db_xref="EcoGene:EG11180" /db_xref="GeneID:947787" /translation="MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPP LGLLIGGIDFKQFAVTLRDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKL NRKKEEPAAAPAPTKEEVLLTEIRDLLKEQNNRS" gene complement(3438431..3438649) /gene="arfA" /locus_tag="b4550" /gene_synonym="ECK3278; JW3253; yhdL" /db_xref="EcoGene:EG11968" /db_xref="GeneID:1450289" CDS complement(3438431..3438649) /gene="arfA" /locus_tag="b4550" /gene_synonym="ECK3278; JW3253; yhdL" /GO_component="GO:0005737 - cytoplasm" /codon_start=1 /transl_table=11 /product="alternate ribosome-rescue factor A" /protein_id="YP_588467.1" /db_xref="GI:94541124" /db_xref="ASAP:ABE-0285071" /db_xref="UniProtKB/Swiss-Prot:P36675" /db_xref="EcoGene:EG11968" /db_xref="GeneID:1450289" /translation="MSRYQHTKGQIKDNAIEALLHDPLFRQRVEKNKKGKGSYMRKGK HGNRGNWEASGKKVNHFFTTGLLLSGAC" gene complement(3438705..3439130) /gene="zntR" /locus_tag="b3292" /gene_synonym="ECK3279; JW3254; yhdM" /db_xref="EcoGene:EG11969" /db_xref="GeneID:947786" CDS complement(3438705..3439130) /gene="zntR" /locus_tag="b3292" /gene_synonym="ECK3279; JW3254; yhdM" /function="putative regulator; Not classified" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0016563 - transcription activator activity" /GO_process="GO:0006350 - transcription; GO:0006805 - xenobiotic metabolic process" /codon_start=1 /transl_table=11 /product="zntA gene transcriptional activator" /protein_id="NP_417751.1" /db_xref="GI:16131171" /db_xref="ASAP:ABE-0010793" /db_xref="UniProtKB/Swiss-Prot:P0ACS5" /db_xref="EcoGene:EG11969" /db_xref="GeneID:947786" /translation="MYRIGELAKMAEVTPDTIRYYEKQQMMEHEVRTEGGFRLYTESD LQRLKFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQS MQRSLQRLNDACCGTAHSSVYCSILEALEQGASGVKSGC" gene complement(3439141..3439509) /gene="yhdN" /locus_tag="b3293" /gene_synonym="ECK3280; JW3255" /db_xref="EcoGene:EG11970" /db_xref="GeneID:947785" CDS complement(3439141..3439509) /gene="yhdN" /locus_tag="b3293" /gene_synonym="ECK3280; JW3255" /codon_start=1 /transl_table=11 /product="DUF1992 family protein" /protein_id="NP_417752.1" /db_xref="GI:16131172" /db_xref="ASAP:ABE-0010795" /db_xref="UniProtKB/Swiss-Prot:P36677" /db_xref="EcoGene:EG11970" /db_xref="GeneID:947785" /translation="MWLLDQWAERHIAEAQAKGEFDNLAGSGEPLILDDDSHVPPELR AGYRLLKNAGCLPPELEQRREAIQLLDILKGIRHDDPQYQEVSRRLSLLELKLRQAGL STDFLRGDYADKLLDKINDN" gene complement(3439616..3439999) /gene="rplQ" /locus_tag="b3294" /gene_synonym="ECK3281; JW3256" /db_xref="EcoGene:EG10878" /db_xref="GeneID:947784" CDS complement(3439616..3439999) /gene="rplQ" /locus_tag="b3294" /gene_synonym="ECK3281; JW3256" /function="structural component; Ribosomal proteins - synthesis, modification" /experiment="N-terminus verified by Edman degradation: PMID 1098937,10739205" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L17" /protein_id="NP_417753.1" /db_xref="GI:16131173" /db_xref="ASAP:ABE-0010799" /db_xref="UniProtKB/Swiss-Prot:P0AG44" /db_xref="EcoGene:EG10878" /db_xref="GeneID:947784" /translation="MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKEL RRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGF RAGDNAPMAYIELVDRSEKAEAAAE" gene complement(3440040..3441029) /gene="rpoA" /locus_tag="b3295" /gene_synonym="ECK3282; JW3257; pez; phs; sez" /db_xref="EcoGene:EG10893" /db_xref="GeneID:947794" CDS complement(3440040..3441029) /gene="rpoA" /locus_tag="b3295" /gene_synonym="ECK3282; JW3257; pez; phs; sez" /EC_number="2.7.7.6" /function="enzyme; RNA synthesis, modification, DNA transcription" /experiment="N-terminus verified by Edman degradation: PMID 387752,1095419,9298646" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006350 - transcription" /codon_start=1 /transl_table=11 /product="RNA polymerase, alpha subunit" /protein_id="NP_417754.1" /db_xref="GI:16131174" /db_xref="ASAP:ABE-0010802" /db_xref="UniProtKB/Swiss-Prot:P0A7Z4" /db_xref="EcoGene:EG10893" /db_xref="GeneID:947794" /translation="MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALR RILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTL NKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIH SEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIR RAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIH YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIADE" gene complement(3441055..3441675) /gene="rpsD" /locus_tag="b3296" /gene_synonym="ECK3283; JW3258; ramA; sud" /db_xref="EcoGene:EG10903" /db_xref="GeneID:947793" CDS complement(3441055..3441675) /gene="rpsD" /locus_tag="b3296" /gene_synonym="ECK3283; JW3258; ramA; sud" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S4" /protein_id="NP_417755.1" /db_xref="GI:16131175" /db_xref="ASAP:ABE-0010805" /db_xref="UniProtKB/Swiss-Prot:P0A7V8" /db_xref="EcoGene:EG10903" /db_xref="GeneID:947793" /translation="MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR KPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVV YRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE LAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK" gene complement(3441709..3442098) /gene="rpsK" /locus_tag="b3297" /gene_synonym="ECK3284; JW3259" /db_xref="EcoGene:EG10910" /db_xref="GeneID:947792" CDS complement(3441709..3442098) /gene="rpsK" /locus_tag="b3297" /gene_synonym="ECK3284; JW3259" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S11" /protein_id="NP_417756.1" /db_xref="GI:16131176" /db_xref="ASAP:ABE-0010807" /db_xref="UniProtKB/Swiss-Prot:P0A7R9" /db_xref="EcoGene:EG10910" /db_xref="GeneID:947792" /translation="MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGW ATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNA AGFRITNITDVTPIPHNGCRPPKKRRV" gene complement(3442115..3442471) /gene="rpsM" /locus_tag="b3298" /gene_synonym="ECK3285; JW3260" /db_xref="EcoGene:EG10912" /db_xref="GeneID:947791" CDS complement(3442115..3442471) /gene="rpsM" /locus_tag="b3298" /gene_synonym="ECK3285; JW3260" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S13" /protein_id="NP_417757.1" /db_xref="GI:16131177" /db_xref="ASAP:ABE-0010809" /db_xref="UniProtKB/Swiss-Prot:P0A7S9" /db_xref="EcoGene:EG10912" /db_xref="GeneID:947791" /translation="MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVK ISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRT KTNARTRKGPRKPIKK" gene complement(3442618..3442734) /gene="rpmJ" /locus_tag="b3299" /gene_synonym="ECK3286; JW3261; secX" /db_xref="EcoGene:EG11232" /db_xref="GeneID:947805" CDS complement(3442618..3442734) /gene="rpmJ" /locus_tag="b3299" /gene_synonym="ECK3286; JW3261; secX" /function="structural component; Ribosomal proteins - synthesis, modification" /experiment="N-terminus verified by Edman degradation: PMID 3542048,10739205" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L36" /protein_id="NP_417758.1" /db_xref="GI:16131178" /db_xref="ASAP:ABE-0010812" /db_xref="UniProtKB/Swiss-Prot:P0A7Q6" /db_xref="EcoGene:EG11232" /db_xref="GeneID:947805" /translation="MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG" gene complement(3442766..3444097) /gene="secY" /locus_tag="b3300" /gene_synonym="ECK3287; JW3262; prlA" /db_xref="EcoGene:EG10766" /db_xref="GeneID:947799" CDS complement(3442766..3444097) /gene="secY" /locus_tag="b3300" /gene_synonym="ECK3287; JW3262; prlA" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /note="putative ATPase subunit of translocase" /codon_start=1 /transl_table=11 /product="preprotein translocase membrane subunit" /protein_id="NP_417759.1" /db_xref="GI:16131179" /db_xref="ASAP:ABE-0010814" /db_xref="UniProtKB/Swiss-Prot:P0AGA2" /db_xref="EcoGene:EG10766" /db_xref="GeneID:947799" /translation="MAKQPGLDFQSAKGGLGELKRRLLFVIGALIVFRIGSFIPIPGI DAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQLLTVVHPTL AEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTA VVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFL VLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIP AIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPLYVLLYASAIIFFCFFYTA LVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMR DAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKANLKGYGR" gene complement(3444105..3444539) /gene="rplO" /locus_tag="b3301" /gene_synonym="ECK3288; JW3263" /db_xref="EcoGene:EG10876" /db_xref="GeneID:947798" CDS complement(3444105..3444539) /gene="rplO" /locus_tag="b3301" /gene_synonym="ECK3288; JW3263" /function="structural component; Ribosomal proteins - synthesis, modification" /experiment="N-terminus verified by Edman degradation: PMID 340263" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L15" /protein_id="NP_417760.1" /db_xref="GI:16131180" /db_xref="ASAP:ABE-0010819" /db_xref="UniProtKB/Swiss-Prot:P02413" /db_xref="EcoGene:EG10876" /db_xref="GeneID:947798" /translation="MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGG GVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANIIG IQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE" gene complement(3444543..3444722) /gene="rpmD" /locus_tag="b3302" /gene_synonym="ECK3289; JW3264" /db_xref="EcoGene:EG10888" /db_xref="GeneID:947797" CDS complement(3444543..3444722) /gene="rpmD" /locus_tag="b3302" /gene_synonym="ECK3289; JW3264" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L30" /protein_id="NP_417761.1" /db_xref="GI:16131181" /db_xref="ASAP:ABE-0010821" /db_xref="UniProtKB/Swiss-Prot:P0AG51" /db_xref="EcoGene:EG10888" /db_xref="GeneID:947797" /translation="MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAI RGMINAVSFMVKVEE" gene complement(3444726..3445229) /gene="rpsE" /locus_tag="b3303" /gene_synonym="ECK3290; eps; JW3265; spc; spcA" /db_xref="EcoGene:EG10904" /db_xref="GeneID:947795" CDS complement(3444726..3445229) /gene="rpsE" /locus_tag="b3303" /gene_synonym="ECK3290; eps; JW3265; spc; spcA" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S5" /protein_id="NP_417762.1" /db_xref="GI:16131182" /db_xref="ASAP:ABE-0010823" /db_xref="UniProtKB/Swiss-Prot:P0A7W1" /db_xref="EcoGene:EG10904" /db_xref="GeneID:947795" /translation="MAHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNG RVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEG TGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKS VEEILGK" gene complement(3445244..3445597) /gene="rplR" /locus_tag="b3304" /gene_synonym="ECK3291; JW3266" /db_xref="EcoGene:EG10879" /db_xref="GeneID:947804" CDS complement(3445244..3445597) /gene="rplR" /locus_tag="b3304" /gene_synonym="ECK3291; JW3266" /function="structural component; Ribosomal proteins - synthesis, modification" /experiment="N-terminus verified by Edman degradation: PMID 1098937,10739205" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L18" /protein_id="NP_417763.1" /db_xref="GI:16131183" /db_xref="ASAP:ABE-0010825" /db_xref="UniProtKB/Swiss-Prot:P0C018" /db_xref="EcoGene:EG10879" /db_xref="GeneID:947804" /translation="MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNG SEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGR VQALADAAREAGLQF" gene complement(3445607..3446140) /gene="rplF" /locus_tag="b3305" /gene_synonym="ECK3292; JW3267" /db_xref="EcoGene:EG10869" /db_xref="GeneID:947803" CDS complement(3445607..3446140) /gene="rplF" /locus_tag="b3305" /gene_synonym="ECK3292; JW3267" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L6" /protein_id="NP_417764.1" /db_xref="GI:16131184" /db_xref="ASAP:ABE-0010827" /db_xref="UniProtKB/Swiss-Prot:P0AG55" /db_xref="EcoGene:EG10869" /db_xref="GeneID:947803" /translation="MSRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVK HADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNV INLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGK GVRYADEVVRTKEAKKK" gene complement(3446153..3446545) /gene="rpsH" /locus_tag="b3306" /gene_synonym="ECK3293; JW3268" /db_xref="EcoGene:EG10907" /db_xref="GeneID:947802" CDS complement(3446153..3446545) /gene="rpsH" /locus_tag="b3306" /gene_synonym="ECK3293; JW3268" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation; GO:0009386 - translational attenuation" /note="30S ribosomal subunit protein S8, and regulator" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S8" /protein_id="NP_417765.1" /db_xref="GI:16131185" /db_xref="ASAP:ABE-0010829" /db_xref="UniProtKB/Swiss-Prot:P0A7W7" /db_xref="EcoGene:EG10907" /db_xref="GeneID:947802" /translation="MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEG FIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIA VVSTSKGVMTDRAARQAGLGGEIICYVA" gene complement(3446579..3446884) /gene="rpsN" /locus_tag="b3307" /gene_synonym="ECK3294; JW3269" /db_xref="EcoGene:EG10913" /db_xref="GeneID:947801" CDS complement(3446579..3446884) /gene="rpsN" /locus_tag="b3307" /gene_synonym="ECK3294; JW3269" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S14" /protein_id="NP_417766.1" /db_xref="GI:16131186" /db_xref="ASAP:ABE-0010831" /db_xref="UniProtKB/Swiss-Prot:P0AG59" /db_xref="EcoGene:EG10913" /db_xref="GeneID:947801" /translation="MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNA VLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW" gene complement(3446899..3447438) /gene="rplE" /locus_tag="b3308" /gene_synonym="ECK3295; JW3270" /db_xref="EcoGene:EG10868" /db_xref="GeneID:947800" CDS complement(3446899..3447438) /gene="rplE" /locus_tag="b3308" /gene_synonym="ECK3295; JW3270" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L5" /protein_id="NP_417767.1" /db_xref="GI:16131187" /db_xref="ASAP:ABE-0010833" /db_xref="UniProtKB/Swiss-Prot:P62399" /db_xref="EcoGene:EG10868" /db_xref="GeneID:947800" /translation="MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAI ADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFER LITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTA KSDEEGRALLAAFDFPFRK" gene complement(3447453..3447767) /gene="rplX" /locus_tag="b3309" /gene_synonym="ECK3296; JW3271" /db_xref="EcoGene:EG10884" /db_xref="GeneID:947810" CDS complement(3447453..3447767) /gene="rplX" /locus_tag="b3309" /gene_synonym="ECK3296; JW3271" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L24" /protein_id="NP_417768.1" /db_xref="GI:16131188" /db_xref="ASAP:ABE-0010835" /db_xref="UniProtKB/Swiss-Prot:P60624" /db_xref="EcoGene:EG10884" /db_xref="GeneID:947810" /translation="MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKK HQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSET IK" gene complement(3447778..3448149) /gene="rplN" /locus_tag="b3310" /gene_synonym="ECK3297; JW3272" /db_xref="EcoGene:EG10875" /db_xref="GeneID:947809" CDS complement(3447778..3448149) /gene="rplN" /locus_tag="b3310" /gene_synonym="ECK3297; JW3272" /function="structural component; Ribosomal proteins - synthesis, modification" /experiment="N-terminus verified by Edman degradation: PMID 352727" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L14" /protein_id="NP_417769.1" /db_xref="GI:16131189" /db_xref="ASAP:ABE-0010837" /db_xref="UniProtKB/Swiss-Prot:P0ADY3" /db_xref="EcoGene:EG10875" /db_xref="GeneID:947809" /translation="MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIK EAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGP VTRELRSEKFMKIISLAPEVL" gene complement(3448314..3448568) /gene="rpsQ" /locus_tag="b3311" /gene_synonym="ECK3298; JW3273; neaA" /db_xref="EcoGene:EG10916" /db_xref="GeneID:947808" CDS complement(3448314..3448568) /gene="rpsQ" /locus_tag="b3311" /gene_synonym="ECK3298; JW3273; neaA" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S17" /protein_id="NP_417770.1" /db_xref="GI:16131190" /db_xref="ASAP:ABE-0010840" /db_xref="UniProtKB/Swiss-Prot:P0AG63" /db_xref="EcoGene:EG10916" /db_xref="GeneID:947808" /translation="MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKL HVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL" gene complement(3448568..3448759) /gene="rpmC" /locus_tag="b3312" /gene_synonym="ECK3299; JW3274" /db_xref="EcoGene:EG10887" /db_xref="GeneID:947807" CDS complement(3448568..3448759) /gene="rpmC" /locus_tag="b3312" /gene_synonym="ECK3299; JW3274" /function="structural component; Ribosomal proteins - synthesis, modification" /experiment="N-terminus verified by Edman degradation: PMID 1092361,10739205" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L29" /protein_id="NP_417771.1" /db_xref="GI:16131191" /db_xref="ASAP:ABE-0010842" /db_xref="UniProtKB/Swiss-Prot:P0A7M6" /db_xref="EcoGene:EG10887" /db_xref="GeneID:947807" /translation="MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLK QVRRDVARVKTLLNEKAGA" gene complement(3448759..3449169) /gene="rplP" /locus_tag="b3313" /gene_synonym="ECK3300; JW3275" /db_xref="EcoGene:EG10877" /db_xref="GeneID:947806" CDS complement(3448759..3449169) /gene="rplP" /locus_tag="b3313" /gene_synonym="ECK3300; JW3275" /function="structural component; Ribosomal proteins - synthesis, modification" /experiment="N-terminus verified by Edman degradation: PMID 786730" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L16" /protein_id="NP_417772.1" /db_xref="GI:16131192" /db_xref="ASAP:ABE-0010846" /db_xref="UniProtKB/Swiss-Prot:P0ADY7" /db_xref="EcoGene:EG10877" /db_xref="GeneID:947806" /translation="MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTAR QIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVL YEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM" gene complement(3449182..3449883) /gene="rpsC" /locus_tag="b3314" /gene_synonym="ECK3301; JW3276" /db_xref="EcoGene:EG10902" /db_xref="GeneID:947814" CDS complement(3449182..3449883) /gene="rpsC" /locus_tag="b3314" /gene_synonym="ECK3301; JW3276" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S3" /protein_id="NP_417773.1" /db_xref="GI:16131193" /db_xref="ASAP:ABE-0010848" /db_xref="UniProtKB/Swiss-Prot:P0A7V3" /db_xref="EcoGene:EG10902" /db_xref="GeneID:947814" /translation="MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLT KELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN IAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGA EIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPE KPAAQPKKQQRKGRK" gene complement(3449901..3450233) /gene="rplV" /locus_tag="b3315" /gene_synonym="ECK3302; eryB; JW3277" /db_xref="EcoGene:EG10882" /db_xref="GeneID:947813" CDS complement(3449901..3450233) /gene="rplV" /locus_tag="b3315" /gene_synonym="ECK3302; eryB; JW3277" /function="structural component; Ribosomal proteins - synthesis, modification" /experiment="N-terminus verified by Edman degradation: PMID 7007072" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L22" /protein_id="NP_417774.1" /db_xref="GI:16131194" /db_xref="ASAP:ABE-0010850" /db_xref="UniProtKB/Swiss-Prot:P61175" /db_xref="EcoGene:EG10882" /db_xref="GeneID:947813" /translation="METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAA VLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSH ITVVVSDR" gene complement(3450248..3450526) /gene="rpsS" /locus_tag="b3316" /gene_synonym="ECK3303; JW3278" /db_xref="EcoGene:EG10918" /db_xref="GeneID:947811" CDS complement(3450248..3450526) /gene="rpsS" /locus_tag="b3316" /gene_synonym="ECK3303; JW3278" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S19" /protein_id="NP_417775.1" /db_xref="GI:16131195" /db_xref="ASAP:ABE-0010852" /db_xref="UniProtKB/Swiss-Prot:P0A7U3" /db_xref="EcoGene:EG10918" /db_xref="GeneID:947811" /translation="MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNM IGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK" gene complement(3450543..3451364) /gene="rplB" /locus_tag="b3317" /gene_synonym="ECK3304; JW3279" /db_xref="EcoGene:EG10865" /db_xref="GeneID:947820" CDS complement(3450543..3451364) /gene="rplB" /locus_tag="b3317" /gene_synonym="ECK3304; JW3279" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L2" /protein_id="NP_417776.1" /db_xref="GI:16131196" /db_xref="ASAP:ABE-0010854" /db_xref="UniProtKB/Swiss-Prot:P60422" /db_xref="EcoGene:EG10865" /db_xref="GeneID:947820" /translation="MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRN NNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERR YILAPKGLKAGDQIQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGT YVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRP TVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSK" gene complement(3451382..3451684) /gene="rplW" /locus_tag="b3318" /gene_synonym="ECK3305; JW3280" /db_xref="EcoGene:EG10883" /db_xref="GeneID:947819" CDS complement(3451382..3451684) /gene="rplW" /locus_tag="b3318" /gene_synonym="ECK3305; JW3280" /function="structural component; Ribosomal proteins - synthesis, modification" /experiment="N-terminus verified by Edman degradation: PMID 391594" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L23" /protein_id="NP_417777.1" /db_xref="GI:16131197" /db_xref="ASAP:ABE-0010856" /db_xref="UniProtKB/Swiss-Prot:P0ADZ0" /db_xref="EcoGene:EG10883" /db_xref="GeneID:947819" /translation="MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIK AAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE" gene complement(3451681..3452286) /gene="rplD" /locus_tag="b3319" /gene_synonym="ECK3306; eryA; JW3281" /db_xref="EcoGene:EG10867" /db_xref="GeneID:947818" CDS complement(3451681..3452286) /gene="rplD" /locus_tag="b3319" /gene_synonym="ECK3306; eryA; JW3281" /function="structural component; Ribosomal proteins - synthesis, modification" /experiment="N-terminus verified by Edman degradation: PMID 9298646" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006355 - regulation of transcription, DNA-dependent; GO:0006412 - translation; GO:0009386 - translational attenuation" /note="50S ribosomal subunit protein L4, regulates expression of S10 operon" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L4" /protein_id="NP_417778.1" /db_xref="GI:16131198" /db_xref="ASAP:ABE-0010858" /db_xref="UniProtKB/Swiss-Prot:P60723" /db_xref="EcoGene:EG10867" /db_xref="GeneID:947818" /translation="MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTR AQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYR GALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDENLFLA ARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA" gene complement(3452297..3452926) /gene="rplC" /locus_tag="b3320" /gene_synonym="ECK3307; JW3282" /db_xref="EcoGene:EG10866" /db_xref="GeneID:947817" CDS complement(3452297..3452926) /gene="rplC" /locus_tag="b3320" /gene_synonym="ECK3307; JW3282" /function="structural component; Ribosomal proteins - synthesis, modification" /experiment="N-terminus verified by Edman degradation: PMID 365579,9298646,10739205" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L3" /protein_id="NP_417779.1" /db_xref="GI:16131199" /db_xref="ASAP:ABE-0010860" /db_xref="UniProtKB/Swiss-Prot:P60438" /db_xref="EcoGene:EG10866" /db_xref="GeneID:947817" /translation="MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDG YRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFA DVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKK MAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAVKA" gene complement(3452959..3453270) /gene="rpsJ" /locus_tag="b3321" /gene_synonym="ECK3308; JW3283; nusE" /db_xref="EcoGene:EG10909" /db_xref="GeneID:947816" CDS complement(3452959..3453270) /gene="rpsJ" /locus_tag="b3321" /gene_synonym="ECK3308; JW3283; nusE" /function="structural component; Ribosomal proteins - synthesis, modification" /experiment="N-terminus verified by Edman degradation: PMID 7007073,9298646" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S10" /protein_id="NP_417780.1" /db_xref="GI:16131200" /db_xref="ASAP:ABE-0010862" /db_xref="UniProtKB/Swiss-Prot:P0A7R5" /db_xref="EcoGene:EG10909" /db_xref="GeneID:947816" /translation="MQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPT RKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL G" gene complement(3453508..3453927) /gene="gspB" /locus_tag="b3322" /gene_synonym="ECK3309; JW3284; pinO; pioO" /db_xref="EcoGene:EG11263" /db_xref="GeneID:947826" CDS complement(3453508..3453927) /gene="gspB" /locus_tag="b3322" /gene_synonym="ECK3309; JW3284; pinO; pioO" /function="factor; DNA - replication, repair, restriction/modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006261 - DNA-dependent DNA replication" /note="calcium-binding protein required for initiation of chromosome replication" /codon_start=1 /transl_table=11 /product="part of gsp divergon involved in type II protein secretion" /protein_id="NP_417781.1" /db_xref="GI:16131201" /db_xref="ASAP:ABE-0010865" /db_xref="UniProtKB/Swiss-Prot:P03825" /db_xref="EcoGene:EG11263" /db_xref="GeneID:947826" /translation="MFEFYIAAREQKETGHPGIFSRQKHSTIIYVICLLLICLWFAGM VLVGGYARQLWVLWIVKAEVTVEAETPAFKQSTQHYFFKKQPLPVVESVEEEDDPGVA VENAPSSSEDEENTVEESEEKAGLRERVKNALNELER" gene complement(3453929..3455398) /gene="gspA" /locus_tag="b3323" /gene_synonym="ECK3310; JW3285; yheD" /db_xref="EcoGene:EG12888" /db_xref="GeneID:947825" CDS complement(3453929..3455398) /gene="gspA" /locus_tag="b3323" /gene_synonym="ECK3310; JW3285; yheD" /function="putative transport; Not classified" /note="putative export protein A for general secretion pathway (GSP)" /codon_start=1 /transl_table=11 /product="general secretory pathway component, cryptic" /protein_id="NP_417782.1" /db_xref="GI:16131202" /db_xref="ASAP:ABE-0010867" /db_xref="UniProtKB/Swiss-Prot:P45756" /db_xref="EcoGene:EG12888" /db_xref="GeneID:947825" /translation="MSTRREVILSWLCEKRQTWRLCYLLGEAGSGKTWLAQQLQKDKH RRVITLSLVVSWQGKAAWIVTDDNAAEQGCRDSAWTRDEMAGQLLHALHRTDSRCPLI IIENAHLNHRRILDDLQRAISLIPDGQFLLIGRPDRKVERDFKKQGIELVSIGRLTEH ELKASILEGQNIDQPDLLLTARVLKRIALLCRGDRRKLALAGETIRLLQQAEQTSVFT AKQWRMIYRILGDNRPRKMQLAVVMSGTIIALTCGWLLLSSFTATLPVPAWLIPVTPV VKQDMTKDIAHVVMRDSEALSVLYGVWGYEVPADSAWCDQAVRAGLACKSGNASLQTL VDQNLPWIASLKVGDKKLPVVVVRVGEASVDVLVGQQTWTLTHKWFESVWTGDYLLLW KMSPEGESTITRDSSEEEILWLETMLNRALHISTEPSAEWRPLLVEKIKQFQKSHHLK TDGVVGFSTLVHLWQVAGESAYLYRDEANISPETTVKGK" gene 3455578..3456393 /gene="gspC" /locus_tag="b3324" /gene_synonym="ECK3311; JW3286; yheE" /db_xref="EcoGene:EG12889" /db_xref="GeneID:947824" CDS 3455578..3456393 /gene="gspC" /locus_tag="b3324" /gene_synonym="ECK3311; JW3286; yheE" /function="putative transport; Not classified" /codon_start=1 /transl_table=11 /product="general secretory pathway component, cryptic" /protein_id="NP_417783.1" /db_xref="GI:16131203" /db_xref="ASAP:ABE-0010877" /db_xref="UniProtKB/Swiss-Prot:P45757" /db_xref="EcoGene:EG12889" /db_xref="GeneID:947824" /translation="MPTLRFPFHLANHNKDAAINILIIFISIGSIIFNVNYFHTTIVK NGQIINQPTNAFQSDFSLAALWRNENHAGVKDANPVAVNQETPKLSIALNGIVLTSND ETSFVLINEGSEQKRYSLNEALESAPGTFIRKINKTSVVFETHGHYEKVTLHPGLPDI IKQPDSESQNVLADYIIATPIRDGEQIYGLRLNPRKGLNAFTTSLLQPGDIALRINNL SLTHPDEVSQALSLLLTQQSAQFTIRRNGVPRLINVSVGELTGMNGLRHERTQ" gene 3456377..3458329 /gene="gspD" /locus_tag="b3325" /gene_synonym="ECK3312; JW5707; yheF" /db_xref="EcoGene:EG12890" /db_xref="GeneID:947822" CDS 3456377..3458329 /gene="gspD" /locus_tag="b3325" /gene_synonym="ECK3312; JW5707; yheF" /function="putative transport; Not classified" /codon_start=1 /transl_table=11 /product="general secretory pathway component, cryptic" /protein_id="NP_417784.4" /db_xref="GI:90111569" /db_xref="ASAP:ABE-0010879" /db_xref="UniProtKB/Swiss-Prot:P45758" /db_xref="EcoGene:EG12890" /db_xref="GeneID:947822" /translation="MKGLNKITCCLLAALLMPCAGHAENEQYGANFNNADIRQFVEIV GQHLGKTILIDPSVQGTISVRSNDTFSQQEYYQFFLSILDLYGYSVITLDNGFLKVVR SANVKTSPGMIADSSRPGVGDELVTRIVPLENVPARDLAPLLRQMMDAGSVGNVVHYE PSNVLILTGRASTINKLIEVIKRVDVIGTEKQQIIHLEYASAEDLAEILNQLISESHG KSQMPALLSAKIVADKRTNSLIISGPEKARQRITSLLKSLDVEESEEGNTRVYYLKYA KATNLVEVLTGVSEKLKDEKGNARKPSSSGAMDNVAITADEQTNSLVITADQSVQEKL ATVIARLDIRRAQVLVEAIIVEVQDGNGLNLGVQWANKNVGAQQFTNTGLPIFNAAQG VADYKKNGGITSANPAWDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSIVT LDNKLASFNVGQDVPVLSGSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAVLLEIE QEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDI PLVGQLFRYTSTERAKRNLMVFIRPTIIRDDDVYRSLSKEKYTRYRQEQQQRIDGKSK ALVGSEDLPVLDENTFNSHAPAPSSR" gene 3458339..3459820 /gene="gspE" /locus_tag="b3326" /gene_synonym="ECK3313; JW3288; yheG" /db_xref="EcoGene:EG12891" /db_xref="GeneID:947823" CDS 3458339..3459820 /gene="gspE" /locus_tag="b3326" /gene_synonym="ECK3313; JW3288; yheG" /function="putative transport; Not classified" /codon_start=1 /transl_table=11 /product="general secretory pathway component, cryptic" /protein_id="NP_417785.1" /db_xref="GI:16131205" /db_xref="ASAP:ABE-0010881" /db_xref="UniProtKB/Swiss-Prot:P45759" /db_xref="EcoGene:EG12891" /db_xref="GeneID:947823" /translation="MRIHSPYPASWALAQRIGYLYSEGEIIYLADTPFERLLDIQRQV GQCQTMTSLSQADFEARLEAVFHQNTGESQQIAQDIDQSVDLLSLSEEMPANEDLLNE DSAAPVIRLINAILSEAIKETASDIHIETYEKTMSIRFRIDGVLRTILQPNKKLAALL ISRIKVMARLDIAEKRIPQDGRISLRIGRRNIDVRVSTLPSIYGERAVLRLLDKNSLQ LSLNNLGMTAADKQDLENLIQLPHGIILVTGPTGSGKSTTLYAILSALNTPGRNILTV EDPVEYELEGIGQTQVNTRVDMSFARGLRAILRQDPDVVMVGEIRDTETAQIAVQASL TGHLVLSTLHTNSASGAVTRLRDMGVESFLLSSSLAGIIAQRLVRRLCPQCRQFTPVS PQQAQMFKYHQLAVTTIGTPVGCPHCHQSGYQGRMAIHEMMVVTPELRAAIHENVDEQ ALERLVRQQHKALIKNGLQKVISGDTSWDEVMRVASATLESEA" gene 3459817..3461013 /gene="gspF" /locus_tag="b3327" /gene_synonym="ECK3314; hofF; hopF; JW3289" /db_xref="EcoGene:EG12885" /db_xref="GeneID:947829" CDS 3459817..3461013 /gene="gspF" /locus_tag="b3327" /gene_synonym="ECK3314; hofF; hopF; JW3289" /function="putative transport; Not classified" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="general secretory pathway component, cryptic" /protein_id="NP_417786.1" /db_xref="GI:16131206" /db_xref="ASAP:ABE-0010883" /db_xref="UniProtKB/Swiss-Prot:P41441" /db_xref="EcoGene:EG12885" /db_xref="GeneID:947829" /translation="MNYRYRAMTQDGQKLQGIIDANDERQARLRLREEGLFLLDIRPQ KSSGVKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVR SAILEGHPLSDALQHFPTLFDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKL IQSLIYPCMLTTVAIGVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTG PTLLATVFIVAVGFWLWLKRGNNRHRFHAMLLRVALIGPLICAINSARYLRTLSILQS SGVPLLDGMNLSTESLNNLEIRQRLANAAENVRQGNSIHLSLEQTAIFPPMMLYMVAS GEKSGQLGTLMVRAADNQETLQQNRIALTLSIFEPALIITMALIVLFIVVSVLQPLLQ LNSMIN" gene 3461023..3461460 /gene="gspG" /locus_tag="b3328" /gene_synonym="ECK3315; hofG; hopG; JW3290" /db_xref="EcoGene:EG12886" /db_xref="GeneID:947827" CDS 3461023..3461460 /gene="gspG" /locus_tag="b3328" /gene_synonym="ECK3315; hofG; hopG; JW3290" /function="putative transport; Not classified" /codon_start=1 /transl_table=11 /product="pseudopilin, cryptic, general secretion pathway" /protein_id="NP_417787.1" /db_xref="GI:16131207" /db_xref="ASAP:ABE-0010885" /db_xref="UniProtKB/Swiss-Prot:P41442" /db_xref="EcoGene:EG12886" /db_xref="GeneID:947827" /translation="MRATDKQRGFTLLEIMVVIVIIGVLASLVVPNLMGNKEKADKQK AVSDIVALENALDMYKLDNHHYPTTNQGLESLVEAPTLPPLAANYNKEGYIKRLPADP WGNDYVLVNPGEHGAYDLLSAGPDGEMGTEDDITNWGLSKKKK" gene 3461468..3461977 /gene="gspH" /locus_tag="b3329" /gene_synonym="ECK3316; hofH; hopH; JW3291" /db_xref="EcoGene:EG12887" /db_xref="GeneID:947834" CDS 3461468..3461977 /gene="gspH" /locus_tag="b3329" /gene_synonym="ECK3316; hofH; hopH; JW3291" /function="putative transport; Not classified" /codon_start=1 /transl_table=11 /product="putative general secretory pathway component, cryptic" /protein_id="NP_417788.1" /db_xref="GI:16131208" /db_xref="ASAP:ABE-0010888" /db_xref="UniProtKB/Swiss-Prot:P41443" /db_xref="EcoGene:EG12887" /db_xref="GeneID:947834" /translation="MNQQRGFTLLEMMLVLALVAITASVVLFTYGREDVASTRARETA ARFTAALELAIDRATLSGQPVGIHFSDSAWRIMVPGKTPSAWRWVPLQEDAADESQND WDEELSIHLQPFKPDDSNQPQVVILADGQITPFSLLMANAGTGEPLLTLVCSGSWPLD QTLARDTRP" gene 3461974..3462351 /gene="gspI" /locus_tag="b3330" /gene_synonym="ECK3317; JW5706; yheH" /db_xref="EcoGene:EG12892" /db_xref="GeneID:947833" CDS 3461974..3462351 /gene="gspI" /locus_tag="b3330" /gene_synonym="ECK3317; JW5706; yheH" /function="putative transport; Not classified" /codon_start=1 /transl_table=11 /product="general secretory pathway component, cryptic" /protein_id="NP_417789.4" /db_xref="GI:90111570" /db_xref="ASAP:ABE-0010890" /db_xref="UniProtKB/Swiss-Prot:P45760" /db_xref="EcoGene:EG12892" /db_xref="GeneID:947833" /translation="MNKQSGMTLLEVLLAMSIFTAVALTLMSSMQGQRNAIERMRNET LALWIADNQLQSQDSFGEENTSSSGKELINGEEWNWRSDIHSSKDGTLLERTITVTLP SGQTTSLTRYQSIDNKSGQAQDD" gene 3462344..3462931 /gene="gspJ" /locus_tag="b3331" /gene_synonym="ECK3318; JW3293; yheI" /db_xref="EcoGene:EG12893" /db_xref="GeneID:947832" CDS 3462344..3462931 /gene="gspJ" /locus_tag="b3331" /gene_synonym="ECK3318; JW3293; yheI" /function="putative transport; Not classified" /codon_start=1 /transl_table=11 /product="putative general secretory pathway component, cryptic" /protein_id="NP_417790.1" /db_xref="GI:16131210" /db_xref="ASAP:ABE-0010892" /db_xref="UniProtKB/Swiss-Prot:P45761" /db_xref="EcoGene:EG12893" /db_xref="GeneID:947832" /translation="MINRQQGFTLLEVMAALAIFSMLSVLAFMIFSQASELHQRSQKE IQQFNQLQRTITILDNDLLQLVARRNRSTDKIMVLGEEAIFTTQSRDPLAPLSEAQTL LTVHWYLRNHTLYRAVRTSVDGRKDQPAQAMLEHVESFLLESNSGESQELPLSVTLHL QTQQYGGLQRRFALPEQLAREESPAQTQAGNNNHE" gene 3462924..3463907 /gene="gspK" /locus_tag="b3332" /gene_synonym="ECK3319; JW3294; yheJ" /db_xref="EcoGene:EG12894" /db_xref="GeneID:947831" CDS 3462924..3463907 /gene="gspK" /locus_tag="b3332" /gene_synonym="ECK3319; JW3294; yheJ" /function="putative transport; Not classified" /codon_start=1 /transl_table=11 /product="general secretory pathway component, cryptic" /protein_id="NP_417791.1" /db_xref="GI:16131211" /db_xref="ASAP:ABE-0010894" /db_xref="UniProtKB/Swiss-Prot:P45762" /db_xref="EcoGene:EG12894" /db_xref="GeneID:947831" /translation="MNNEQRGVALLIVLMLLALMAALAADMTLSFHSQLQRTRQVNHH LQRQYDIELAEKLALASLTQDVKDNDRQTTLQQYWAQPQQLQLEDGNTVKWQLRDAQH CFNLNALAKISDDPLASPDFPAQVFSALLINAGIDRGNTDEIVQSIADYIDVDDSPRF HGAEDSFYQSQTPPRHSANQMLFLTGELRQIKGITENIYQRLIPYVCVLPTTELSINL NMLTENDIPLFRALFLNNITDADARVLLQKRPREGWLTTDAFLYWAQQDFSGVKPLVA QVKRHLFPYSRYFTLSTESISDEQSQGWQSHIFFNRKQQSAQIYRRTLQLY" gene 3463922..3465085 /gene="gspL" /locus_tag="b3333" /gene_synonym="ECK3320; JW5705; yheK" /db_xref="EcoGene:EG12895" /db_xref="GeneID:947842" CDS 3463922..3465085 /gene="gspL" /locus_tag="b3333" /gene_synonym="ECK3320; JW5705; yheK" /function="putative transport; Not classified" /codon_start=1 /transl_table=11 /product="general secretory pathway component, cryptic" /protein_id="NP_417792.2" /db_xref="GI:90111571" /db_xref="ASAP:ABE-0010896" /db_xref="UniProtKB/Swiss-Prot:P45763" /db_xref="EcoGene:EG12895" /db_xref="GeneID:947842" /translation="MPESLMVIRSSSTLRKHWEWMTFSADSVSSVHTLTDDLPLESLA DQPGAGNVHLLIPPEGLLYRSLTLPNAKYKLTAQTLQWLAEETLPDNTQDWHWTVVDK QNESVEVIGIQSEKLSRYLERLHTAGLNVTRVLPDGCYLPWEVDSWTLVNQQTSWLIR SAAHAFNELDEHWLQHLAAQFPPENMLCYGVVPHGVAAANPLIQHPEIPSLSLYSADI AFQRYDMLHGIFRKQKTVSKSGKWLARLAVSCLVLAILSFVGSRSIALWHTLKIEDQL QQQQQETWQRYFPQIKRTHNFRFYFKQQLAQQYPEAVPLLYHLQTLLLEHPELQLMEA NYSQKQKSLTLKMSAKSEANIDRFCELTQSWLPMEKTEKDPVSGVWTVRNSGK" gene 3465082..3465543 /gene="gspM" /locus_tag="b3334" /gene_synonym="ECK3321; hopZ; JW5704; pshM" /db_xref="EcoGene:EG12173" /db_xref="GeneID:947841" CDS 3465082..3465543 /gene="gspM" /locus_tag="b3334" /gene_synonym="ECK3321; hopZ; JW5704; pshM" /function="putative transport; Not classified" /codon_start=1 /transl_table=11 /product="general secretory pathway component, cryptic" /protein_id="NP_417793.2" /db_xref="GI:90111572" /db_xref="ASAP:ABE-0010898" /db_xref="UniProtKB/Swiss-Prot:P36678" /db_xref="EcoGene:EG12173" /db_xref="GeneID:947841" /translation="MIKSWWAEKSTSEKQIVAALAVLSLGVFCWLGVIKPIDTYIAEH QSHAQKIKKDIKWMQDQASTHGLLGHPALTQPIKNILLEEAKRENLAITLENGPDNTL TIHPVTAPLENVSRWLTTAQVTYGIVIEDLQFTLAGNEEITLRHLSFREQQ" gene 3465543..3466220 /gene="gspO" /locus_tag="b3335" /gene_synonym="ECK3322; hofD; hopD; hopO; JW3297; yheC" /db_xref="EcoGene:EG11359" /db_xref="GeneID:947840" CDS 3465543..3466220 /gene="gspO" /locus_tag="b3335" /gene_synonym="ECK3322; hofD; hopD; hopO; JW3297; yheC" /EC_number="2.1.1.-" /EC_number="3.4.23.43" /function="enzyme; Degradation of proteins, peptides, glyco" /GO_component="GO:0019866 - organelle inner membrane; GO:0009274 - peptidoglycan-based cell wall" /codon_start=1 /transl_table=11 /product="bifunctional prepilin leader peptidase/ methylase" /protein_id="NP_417794.1" /db_xref="GI:16131214" /db_xref="ASAP:ABE-0010901" /db_xref="UniProtKB/Swiss-Prot:P25960" /db_xref="EcoGene:EG11359" /db_xref="GeneID:947840" /translation="MTMLLPLFILVGFIADYFVNAIAYHLSPLEDKTALTFRQVLVHF RQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGALFLYFCFVLTLSVIDFRTQLLPD KLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLG YLAWISY" gene complement(3466249..3466725) /gene="bfr" /locus_tag="b3336" /gene_synonym="ECK3323; JW3298" /db_xref="EcoGene:EG10113" /db_xref="GeneID:947839" CDS complement(3466249..3466725) /gene="bfr" /locus_tag="b3336" /gene_synonym="ECK3323; JW3298" /function="carrier; Transport of small molecules: Cations" /experiment="N-terminus verified by Edman degradation: PMID 2644932" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006826 - iron ion transport" /note="bacterioferrin, an iron storage homoprotein" /codon_start=1 /transl_table=11 /product="bacterioferritin, iron storage and detoxification protein" /protein_id="NP_417795.1" /db_xref="GI:16131215" /db_xref="ASAP:ABE-0010903" /db_xref="UniProtKB/Swiss-Prot:P0ABD3" /db_xref="EcoGene:EG10113" /db_xref="GeneID:947839" /translation="MKGDTKVINYLNKLLGNELVAINQYFLHARMFKNWGLKRLNDVE YHESIDEMKHADRYIERILFLEGLPNLQDLGKLNIGEDVEEMLRSDLALELDGAKNLR EAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLIQKMGLQNYLQAQIREEG" gene complement(3466797..3466991) /gene="bfd" /locus_tag="b3337" /gene_synonym="ECK3324; JW3299; yheA" /db_xref="EcoGene:EG11181" /db_xref="GeneID:947836" CDS complement(3466797..3466991) /gene="bfd" /locus_tag="b3337" /gene_synonym="ECK3324; JW3299; yheA" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006826 - iron ion transport" /codon_start=1 /transl_table=11 /product="bacterioferritin-associated ferredoxin" /protein_id="NP_417796.1" /db_xref="GI:16131216" /db_xref="ASAP:ABE-0010906" /db_xref="UniProtKB/Swiss-Prot:P0AE56" /db_xref="EcoGene:EG11181" /db_xref="GeneID:947836" /translation="MYVCLCNGISDKKIRQAVRQFSPHSFQQLKKFIPVGNQCGKCVR AAREVMEDELMQLPEFKESA" gene complement(3467160..3469853) /gene="chiA" /locus_tag="b3338" /gene_synonym="ECK3325; JW3300; yheB" /db_xref="EcoGene:EG11237" /db_xref="GeneID:947837" CDS complement(3467160..3469853) /gene="chiA" /locus_tag="b3338" /gene_synonym="ECK3325; JW3300; yheB" /EC_number="3.2.1.14" /EC_number="3.2.1.17" /function="putative enzyme; Not classified" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0009057 - macromolecule catabolic process" /codon_start=1 /transl_table=11 /product="periplasmic endochitinase" /protein_id="NP_417797.1" /db_xref="GI:16131217" /db_xref="ASAP:ABE-0010909" /db_xref="UniProtKB/Swiss-Prot:P13656" /db_xref="EcoGene:EG11237" /db_xref="GeneID:947837" /translation="MKLNIFTKSMIGMGLVCSALPALAMEAWNNQQGGNKYQVIFDGK IYENAWWVSSTNCPGKAKANDATNPWRLKRTATAAEISQFGNTLSCEKSGSSSSSNSN TPASNTPANGGSATPAQGTVPSNSSVVAWNKQQGGQTWYVVFNGAVYKNAWWVASSNC PGDAKSNDASNPWRYVRAATATEISETSNPQSCTSAPQPSPDVKPAPDVKPAPDVQPA PADKSNDNYAVVAWKGQEGSSTWYVIYNGGIYKNAWWVGAANCPGDAKENDASNPWRY VRAATATEISQYGNPGSCSVKPDNNGGAVTPVDPTPETPVTPTPDNSEPSTPADSVND YSLQAWSGQEGSEIYHVIFNGNVYKNAWWVGSKDCPRGTSAENSNNPWRLERTATAAE LSQYGNPTTCEIDNGGVIVADGFQASKAYSADSIVDYNDAHYKTSVDQDAWGFVPGGD NPWKKYEPAKAWSASTVYVKGDRVVVDGQAYEALFWTQSDNPALVANQNATGSNSRPW KPLGKAQSYSNEELNNAPQFNPETLYASDTLIRFNGVNYISQSKVQKVSPSDSNPWRV FVDWTGTKERVGTPKKAWPKHVYAPYVDFTLNTIPDLAALAKNHNVNHFTLAFVVSKD ANTCLPTWGTAYGMQNYAQYSKIKALREAGGDVMLSIGGANNAPLAASCKNVDDLMQH YYDIVDNLNLKVLDFDIEGTWVADQASIERRNLAVKKVQDKWKSEGKDIAIWYTLPIL PTGLTPEGMNVLSDAKAKGVELAGVNVMTMDYGNAICQSANTEGQNIHGKCATSAIAN LHSQLKGLHPNKSDAEIDAMMGTTPMVGVNDVQGEVFYLSDARLVMQDAQKRNLGMVG IWSIARDLPGGTNLSPEFHGLTKEQAPKYAFSEIFAPFTKQ" gene complement(3470145..3471329) /gene="tufA" /locus_tag="b3339" /gene_synonym="ECK3326; JW3301; kirT; pulT" /db_xref="EcoGene:EG11036" /db_xref="GeneID:947838" CDS complement(3470145..3471329) /gene="tufA" /locus_tag="b3339" /gene_synonym="ECK3326; JW3301; kirT; pulT" /function="factor; Proteins - translation and modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006970 - response to osmotic stress; GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="translation elongation factor EF-Tu 1" /protein_id="NP_417798.1" /db_xref="GI:16131218" /db_xref="ASAP:ABE-0010912" /db_xref="UniProtKB/Swiss-Prot:P0CE47" /db_xref="EcoGene:EG11036" /db_xref="GeneID:947838" /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA RAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGA ILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ YDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDV FSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVG VLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFR TTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKV LG" gene complement(3471400..3473514) /gene="fusA" /locus_tag="b3340" /gene_synonym="ECK3327; far; fus; JW3302" /db_xref="EcoGene:EG10360" /db_xref="GeneID:947847" CDS complement(3471400..3473514) /gene="fusA" /locus_tag="b3340" /gene_synonym="ECK3327; far; fus; JW3302" /function="factor; Proteins - translation and modification" /GO_component="GO:0005737 - cytoplasm" /GO_process="GO:0006412 - translation" /note="GTP-binding protein chain elongation factor EF-G" /codon_start=1 /transl_table=11 /product="protein chain elongation factor EF-G, GTP-binding" /protein_id="NP_417799.1" /db_xref="GI:16131219" /db_xref="ASAP:ABE-0010914" /db_xref="UniProtKB/Swiss-Prot:P0A6M8" /db_xref="EcoGene:EG10360" /db_xref="GeneID:947847" /translation="MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH DGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERS MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKT RLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEW HQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQ AMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLT FFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVT TGDTLCDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTD EESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQ SGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPL AGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETP EENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTM EFLKYDEAPSNVAQAVIEARGK" gene complement(3473542..3474081) /gene="rpsG" /locus_tag="b3341" /gene_synonym="ECK3328; JW3303" /db_xref="EcoGene:EG10906" /db_xref="GeneID:947846" CDS complement(3473542..3474081) /gene="rpsG" /locus_tag="b3341" /gene_synonym="ECK3328; JW3303" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /note="30S ribosomal subunit protein S7, initiates assembly" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S7" /protein_id="NP_417800.1" /db_xref="GI:16131220" /db_xref="ASAP:ABE-0010917" /db_xref="UniProtKB/Swiss-Prot:P02359" /db_xref="EcoGene:EG10906" /db_xref="GeneID:947846" /translation="MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVY SALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMR WIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRWLSLR SFSHQAGASSKQPALGYLN" gene complement(3474178..3474552) /gene="rpsL" /locus_tag="b3342" /gene_synonym="asuB; ECK3329; JW3304; strA" /db_xref="EcoGene:EG10911" /db_xref="GeneID:947845" CDS complement(3474178..3474552) /gene="rpsL" /locus_tag="b3342" /gene_synonym="asuB; ECK3329; JW3304; strA" /function="structural component; Ribosomal proteins - synthesis, modification" /GO_component="GO:0005737 - cytoplasm" /GO_function="GO:0003735 - structural constituent of ribosome" /GO_process="GO:0006412 - translation" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S12" /protein_id="NP_417801.1" /db_xref="GI:16131221" /db_xref="ASAP:ABE-0010919" /db_xref="UniProtKB/Swiss-Prot:P0A7S3" /db_xref="EcoGene:EG10911" /db_xref="GeneID:947845" /translation="MATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKK PNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGAL DCSGVKDRKQARSKYGVKRPKA" gene complement(3474678..3474965) /gene="tusB" /locus_tag="b3343" /gene_synonym="ECK3330; JW3305; yheL" /db_xref="EcoGene:EG12896" /db_xref="GeneID:947844" CDS complement(3474678..3474965) /gene="tusB" /locus_tag="b3343" /gene_synonym="ECK3330; JW3305; yheL" /codon_start=1 /transl_table=11 /product="mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein" /protein_id="NP_417802.1" /db_xref="GI:16131222" /db_xref="ASAP:ABE-0010922" /db_xref="UniProtKB/Swiss-Prot:P45530" /db_xref="EcoGene:EG12896" /db_xref="GeneID:947844" /translation="MLHTLHRSPWLTDFAALLRLLSEGDELLLLQDGVTAAVDGNRYL ESLRNAPIKVYALNEDLIARGLTGQISNDIILIDYTDFVRLTVKHPSQMAW" gene complement(3474973..3475332) /gene="tusC" /locus_tag="b3344" /gene_synonym="ECK3331; JW3306; yheM" /db_xref="EcoGene:EG12897" /db_xref="GeneID:947853" CDS complement(3474973..3475332) /gene="tusC" /locus_tag="b3344" /gene_synonym="ECK3331; JW3306; yheM" /codon_start=1 /transl_table=11 /product="mnm(5)-s(2)U34-tRNA synthesis 2-thiolation protein" /protein_id="NP_417803.1" /db_xref="GI:16131223" /db_xref="ASAP:ABE-0010928" /db_xref="UniProtKB/Swiss-Prot:P45531" /db_xref="EcoGene:EG12897" /db_xref="GeneID:947853" /translation="MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIADGV FQLLPGQKPDAVLARDYIATFKLLGLYDIEQCWVCAASLRERGLDPQTPFVVEATPLE ADALRRELANYDVILRF" gene complement(3475332..3475718) /gene="tusD" /locus_tag="b3345" /gene_synonym="ECK3332; JW3307; yheN" /db_xref="EcoGene:EG12898" /db_xref="GeneID:947852" CDS complement(3475332..3475718) /gene="tusD" /locus_tag="b3345" /gene_synonym="ECK3332; JW3307; yheN" /codon_start=1 /transl_table=11 /product="sulfurtransferase for 2-thiolation step of mnm(5)-s(2)U34-tRNA synthesis" /protein_id="NP_417804.1" /db_xref="GI:16131224" /db_xref="ASAP:ABE-0010933" /db_xref="UniProtKB/Swiss-Prot:P45532" /db_xref="EcoGene:EG12898" /db_xref="GeneID:947852" /translation="MRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFYREGV YNANQLTSPASDEFDLVRAWQQLNAQHGVALNICVAAALRRGVVDETEAGRLGLASSN LQQGFTLSGLGALAEASLTCDRVVQF" gene complement(3475718..3476440) /gene="yheO" /locus_tag="b3346" /gene_synonym="ECK3333; JW5703" /db_xref="EcoGene:EG12899" /db_xref="GeneID:947851" CDS complement(3475718..3476440) /gene="yheO" /locus_tag="b3346" /gene_synonym="ECK3333; JW5703" /codon_start=1 /transl_table=11 /product="putative PAS domain-containing DNA-binding transcriptional regulator" /protein_id="NP_417805.4" /db_xref="GI:90111573" /db_xref="ASAP:ABE-0010936" /db_xref="UniProtKB/Swiss-Prot:P64624" /db_xref="EcoGene:EG12899" /db_xref="GeneID:947851" /translation="MSRSLLTNETSELDLLDQRPFDQTDFDILKSYEAVVDGLAMLIG SHCEIVLHSLQDLKCSAIRIANGEHTGRKIGSPITDLALRMLHDMTGADSSVSKCYFT RAKSGVLMKSLTIAIRNREQRVIGLLCINMNLDVPFSQIMSTFVPPETPDVGSSVNFA SSVEDLVTQTLEFTIEEVNADRNVSNNAKNRQIVLNLYEKGIFDIKDAINQVADRLNI SKHTVYLYIRQFKSGDFQGQDK" gene complement(3476607..3477419) /gene="fkpA" /locus_tag="b3347" /gene_synonym="ECK3334; JW3309; yzzS" /db_xref="EcoGene:EG12900" /db_xref="GeneID:947850" CDS complement(3476607..3477419) /gene="fkpA" /locus_tag="b3347" /gene_synonym="ECK3334; JW3309; yzzS" /EC_number="5.2.1.8" /function="enzyme; Proteins - translation and modification" /GO_component="GO:0042597 - periplasmic space" /GO_process="GO:0006457 - protein folding" /codon_start=1 /transl_table=11 /product="FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)" /protein_id="NP_417806.1" /db_xref="GI:16131226" /db_xref="ASAP:ABE-0010938" /db_xref="UniProtKB/Swiss-Prot:P45523" /db_xref="EcoGene:EG12900" /db_xref="GeneID:947850" /translation="MKSLFKVTLLATTMAVALHAPITFAAEAAKPATAADSKAAFKND DQKSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTL QAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEA PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLV IPPELAYGKAGVPGIPPNSTLVFDVELLDVKPAPKADAKPEADAKAADSAKK" gene 3477640..3477858 /gene="slyX" /locus_tag="b3348" /gene_synonym="ECK3335; JW3310" /db_xref="EcoGene:EG11664" /db_xref="GeneID:947849" CDS 3477640..3477858 /gene="slyX" /locus_tag="b3348" /gene_synonym="ECK3335; JW3310" /note="host factor for lysis of phiX174 infection" /codon_start=1 /transl_table=11 /product="phi X174 lysis protein" /protein_id="NP_417807.1" /db_xref="GI:16131227" /db_xref="ASAP:ABE-0010944" /db_xref="UniProtKB/Swiss-Prot:P0A8R4" /db_xref="EcoGene:EG11664" /db_xref="GeneID:947849" /translation="MQDLSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDH LRLLTEKLKASQPSNIASQAEETPPPHY" gene complement(3477907..3478497) /gene="slyD" /locus_tag="b3349" /gene_synonym="ECK3336; JW3311" /db_xref="EcoGene:EG11663" /db_xref="GeneID:947859" CDS complement(3477907..3478497) /gene="slyD" /locus_tag="b3349" /gene_synonym="ECK3336; JW3311" /EC_number="5.2.1.8" /function="enzyme; Proteins - translation and modification" /experiment="N-terminus verified by Edman degradation: PMID 8300624,9188461" /GO_process="GO:0006457 - protein folding" /note="FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)" /codon_start=1 /transl_table=11 /product="FKBP-type peptidyl prolyl cis-trans isomerase (rotamase)" /protein_id="NP_417808.1" /db_xref="GI:16131228" /db_xref="ASAP:ABE-0010946" /db_xref="UniProtKB/Swiss-Prot:P0A9K9" /db_xref="EcoGene:EG11663" /db_xref="GeneID:947859" /translation="MKVAKDLVVSLAYQVR