LOCUS NC_003197 4857450 bp DNA circular CON 28-SEP-2017 DEFINITION Salmonella enterica subsp. enterica serovar Typhimurium str. LT2, complete genome. ACCESSION NC_003197 VERSION NC_003197.2 GI:1109557564 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 Assembly: GCF_000006945.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 4857450) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (bases 1 to 4857450) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (02-DEC-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4857450) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (bases 1 to 4857450) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence is identical to AE006468. On Dec 2, 2016 this sequence version replaced NC_003197.1. RefSeq Category: Reference Genome CLI: Clinical Isolate MOD: Model Organism PRT: Proteomics TYS: Designated Type Strain UPR: UniProt Genome Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. COMPLETENESS: full length. FEATURES Location/Qualifiers source order(1..962614,1004279..1098230,1143703..2728972, 2776826..2844430,2879238..4857450) /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /mol_type="genomic DNA" /strain="LT2; SGSC 1412; ATCC 700720" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /db_xref="taxon:99287" /focus source 962615..1004278 /organism="Salmonella phage Fels-1" /mol_type="genomic DNA" /db_xref="taxon:128975" source 1098231..1143702 /organism="Phage Gifsy-2" /mol_type="genomic DNA" /db_xref="taxon:129862" source 2728973..2776825 /organism="Phage Gifsy-1" /mol_type="genomic DNA" /db_xref="taxon:129861" source 2844431..2879237 /organism="Salmonella phage Fels-2" /mol_type="genomic DNA" /db_xref="taxon:194701" gene 190..255 /gene="thrL" /locus_tag="STM0001" /db_xref="GeneID:1251519" CDS 190..255 /gene="thrL" /locus_tag="STM0001" /note="similar to E. coli thr operon leader peptide (AAC73112.1); Blastp hit to AAC73112.1 (21 aa), 85-1073758644dentity in aa 1 - 21" /codon_start=1 /transl_table=11 /product="thr operon leader peptide" /protein_id="NP_459006.1" /db_xref="GI:16763391" /db_xref="GeneID:1251519" /translation="MNRISTTTITTITITTGNGAG" gene 325..2799 /gene="thrA" /locus_tag="STM0002" /db_xref="GeneID:1251520" regulatory 325..330 /regulatory_class="ribosome_binding_site" /gene="thrA" /locus_tag="STM0002" /note="putative RBS for thrA; RegulonDB:STMS1H000398" CDS 337..2799 /gene="thrA" /locus_tag="STM0002" /EC_number="1.1.1.3" /EC_number="2.7.2.4" /note="bifunctional; N-terminaus is aspartokinase I and C terminus is homoserine dehydrogenase I; similar to E. coli aspartokinase I, homoserine dehydrogenase I (AAC73113.1); Blastp hit to AAC73113.1 (820 aa), 94% identity in aa 1 - 820" /codon_start=1 /transl_table=11 /product="bifunctional aspartate kinase/homoserine dehydrogenase I" /protein_id="NP_459007.1" /db_xref="GI:16763392" /db_xref="GeneID:1251520" /translation="MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKIT NHLVAMIEKTIGGQDALPNISDAERIFSDLLAGLASAQPGFPLARLKMVVEQEFAQIK HVLHGISLLGQCPDSINAALICRGEKMSIAIMAGLLEARGHRVTVIDPVEKLLAVGHY LESTVDIAESTRRIAASQIPADHMILMAGFTAGNEKGELVVLGRNGSDYSAAVLAACL RADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQF QIPCLIKNTGNPQAPGTLIGASSDDDNLPVKGISNLNNMAMFSVSGPGMKGMIGMAAR VFAAMSRAGISVVLITQSSSEYSISFCVPQSDCARARRAMQDEFYLELKEGLLEPLAV TERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATT GVRVTHQMLFNTDQVIEVFVIGVGGVGGALLEQLKRQQTWLKNKHIDLRVCGVANSKA LLTNVHGLNLDNWQAELAQANAPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYAD FLREGFHVVTPNKKANTSSMDYYHQLRFAAAQSRRKFLYDTNVGAGLPVIENLQNLLN AGDELQKFSGILSGSLSFIFGKLEEGMSLSQATALAREMGYTEPDPRDDLSGMDVARK LLILARETGRELELSDIVIEPVLPNEFDASGDVTAFMAHLPQLDDAFAARVAKARDEG KVLRYVGNIEEDGVCRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAG NDVTAAGVFADLLRTLSWKLGV" gene 2789..3730 /gene="thrB" /locus_tag="STM0003" /db_xref="GeneID:1251521" regulatory 2789..2794 /regulatory_class="ribosome_binding_site" /gene="thrB" /locus_tag="STM0003" /note="putative RBS for thrB; RegulonDB:STMS1H000399" CDS 2801..3730 /gene="thrB" /locus_tag="STM0003" /EC_number="2.7.1.39" /note="similar to E. coli homoserine kinase (AAC73114.1); Blastp hit to AAC73114.1 (310 aa), 93% identity in aa 1 - 308" /codon_start=1 /transl_table=11 /product="homoserine kinase" /protein_id="NP_459008.1" /db_xref="GI:16763393" /db_xref="GeneID:1251521" /translation="MVKVYAPASSANMSVGFDVLGAAVTPVDGTLLGDVVSVEAADHF RLHNLGRFADKLPPEPRENIVYQCWERFCQALGKTIPVAMTLEKNMPIGSGLGSSACS VVAALVAMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENGI ISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQ PQLAAALMKDVIAEPYRARLLPGFSQARQAVSEIGALASGISGSGPTLFALCDKPETA QRVADWLSKHYLQNQEGFVHICRLDTAGARVVG" gene 3722..5020 /gene="thrC" /locus_tag="STM0004" /db_xref="GeneID:1251522" regulatory 3722..3727 /regulatory_class="ribosome_binding_site" /gene="thrB" /locus_tag="STM0003" /note="putative RBS for thrC; RegulonDB:STMS1H000400" CDS 3734..5020 /gene="thrC" /locus_tag="STM0004" /EC_number="4.2.3.1" /note="similar to E. coli threonine synthase (AAC73115.1); Blastp hit to AAC73115.1 (428 aa), 93% identity in aa 1 - 428" /codon_start=1 /transl_table=11 /product="threonine synthase" /protein_id="NP_459009.1" /db_xref="GI:16763394" /db_xref="GeneID:1251522" /translation="MKLYNLKDHNEQVSFAQAVTQGLGKQQGLFFPHDLPEFSLTEID EMLNQDFVSRSAKILSAFIGDEIPQQILEERVRAAFAFPAPVAQVESDVGCLELFHGP TLAFKDFGGRFMAQMLTHISGDKPVTILTATSGDTGAAVAHAFYGLENVRVVILYPRG KISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKTALGLNSANSINISR LLAQICYYFEAVAQLPQGARNQLVISVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVN DTVPRFLHDGKWAPKATQATLSNAMDVSQPNNWPRVEELFRRKIWRLTELGYAAVDDT TTQQTMRELKAKGYISEPHAAVAYRALRDQLNPGEYGLFLGTAHPAKFKESVESILGE TLALPEALAERADLPLLSHHLPADFAALRKLMMTRQ" gene complement(5114..5898) /gene="yaaA" /locus_tag="STM0005" /db_xref="GeneID:1251523" CDS complement(5114..5887) /gene="yaaA" /locus_tag="STM0005" /note="similar to E. coli orf, hypothetical protein (AAC73117.1); Blastp hit to AAC73117.1 (258 aa), 86% identity in aa 1 - 257" /codon_start=1 /transl_table=11 /product="peroxide stress protein YaaA" /protein_id="NP_459010.1" /db_xref="GI:16763395" /db_xref="GeneID:1251523" /translation="MLILISPAKTLDYQSPLATTRYTQPELLDHSQQLIQQARQLSAP QISRLMGISDKLADLNATRFHDWQPHFTPDNARQAILAFKGDVYTGLQAETFNDADFD FAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENPRGKDLYQFWGDIITDKLNEALE AQGDRVVVNLASEEYFKSVKPKKLNAELIKPVFLDEKNGKFKVVSFYAKKARGLMSRF IIENRLTKPEQLTAFDREGYFFDEETSTQDELVFKRYEQ" regulatory complement(5893..5898) /regulatory_class="ribosome_binding_site" /gene="yaaA" /locus_tag="STM0005" /note="putative RBS for yaaA; RegulonDB:STMS1H000401" gene complement(5966..7407) /gene="yaaJ" /locus_tag="STM0006" /db_xref="GeneID:1251524" CDS complement(5966..7396) /gene="yaaJ" /locus_tag="STM0006" /note="AGCS family; similar to E. coli inner membrane transport protein (AAC73118.1); Blastp hit to AAC73118.1 (476 aa), 76% identity in aa 1 - 476" /codon_start=1 /transl_table=11 /product="sodium:alanine symporter family protein" /protein_id="NP_459011.1" /db_xref="GI:16763396" /db_xref="GeneID:1251524" /translation="MPEFFSFINEILWGSVMIYLLLGAGCWFTWRTGFIQFRYIRQFS RSLKGSLSPQPGGLTSFQALCTSLAARIGSGNLAGVALAIAAGGPGAVFWMWVSAIIG MATSFAECSLAQLYKERDPTGQFRGGPAWYMARGLGMRWMGVVFALFLLVAYGLIFNS VQANAVSRALHFAFNIPPLISGIALAFCALLIIIRGIKGVARLMQWLIPLIALLWVAG SVFICLWHIEQMPGVIASIVKSAFGWQEAAAGAAGYTLTQAITSGFQRGMFSNEAGMG STPNAAAAATSYPPHPVAQGIVQMIGVFSDTIIICTASAMIILLAGNHASHSSTEGIQ LLQHAMVSLTGEWGASFVALIVILFAFSSIVANYIYAENNLFFLRLHNAKAIWLLRLA TLGMVIAGTLISFPLIWQLADMIMACMAITNLTAILLLSPVVYTLASDYLRQRKLGVR PQFDPRRFPDIEPQLAPDTWEAASRD" regulatory complement(7402..7407) /regulatory_class="ribosome_binding_site" /gene="yaaJ" /locus_tag="STM0006" /note="putative RBS for yaaJ; RegulonDB:STMS1H000402" gene 7652..8618 /gene="talB" /locus_tag="STM0007" /db_xref="GeneID:1251525" regulatory 7652..7657 /regulatory_class="ribosome_binding_site" /gene="talB" /locus_tag="STM0007" /note="putative RBS for talB; RegulonDB:STMS1H000403" CDS 7665..8618 /gene="talB" /locus_tag="STM0007" /EC_number="2.2.1.2" /note="similar to E. coli transaldolase B (AAC73119.1); Blastp hit to AAC73119.1 (317 aa), 94% identity in aa 1 - 317" /codon_start=1 /transl_table=11 /product="transaldolase" /protein_id="NP_459012.1" /db_xref="GI:16763397" /db_xref="GeneID:1251525" /translation="MTDKLTSLRQFTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQ IPEYRKLIDDAVAWAKQQSSDRAQQVVDATDKLAVNIGLEILKLVPGRISTEVDARLS YDTEASIAKAKRIIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFS FAQARACAEAGVYLISPFVGRILDWYKANTDKKDYAPAEDPGVVSVTEIYEYYKQHGY ETVVMGASFRNVGEILELAGCDRLTIAPALLKELAESEGAIERKLSFSGEVKARPERI TEAEFLWQHHQDPMAVDKLADGIRKFAVDQEKLEKMIGDLL" gene 8718..9319 /gene="mog" /locus_tag="STM0008" /db_xref="GeneID:1251526" regulatory 8718..8723 /regulatory_class="ribosome_binding_site" /gene="mog" /locus_tag="STM0008" /note="putative RBS for mog; RegulonDB:STMS1H000404" CDS 8729..9319 /gene="mog" /locus_tag="STM0008" /note="molybdopterine biosynthesis; similar to E. coli required for the efficient incorporation of molybdate into molybdoproteins (AAC73120.1); Blastp hit to AAC73120.1 (195 aa), 91% identity in aa 1 - 192" /codon_start=1 /transl_table=11 /product="molybdopterin adenylyltransferase" /protein_id="NP_459013.1" /db_xref="GI:16763398" /db_xref="GeneID:1251526" /translation="MDTLRIGLVSISDRASSGVYQDKGIPALEEWLASALTTPFEVQR RLIPDEQEIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAIADREMPGFGEQ MRQISLRFVPTAILSRQVGVIRKQALILNLPGQPKSIKETLEGVKADDGSVSVPGIFA SVPYCIQLLDGPYVETAPEVVAAFRPKSARRENMSD" gene complement(9376..9950) /gene="yaaH" /locus_tag="STM0009" /db_xref="GeneID:1251527" CDS complement(9376..9942) /gene="yaaH" /locus_tag="STM0009" /note="similar to E. coli orf, hypothetical protein (AAC73121.1); Blastp hit to AAC73121.1 (188 aa), 90% identity in aa 1 - 188" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459014.1" /db_xref="GI:16763399" /db_xref="GeneID:1251527" /translation="MGNTKLANPAPLGLMGFGMTTILLNLHNAGFFALDGIILAMGIF YGGIAQIFAGLLEYKKGNTFGLTAFTSYGSFWLTLVAILLMPKMGLTDAPDAQLLGAY LGLWGVFTLFMFFGTLKAARALQFVFLSLTVLFALLAVGNITGNEATIHIAGWVGLVC GASAIYLAMGEVLNEQFGRTILPIGEAH" regulatory complement(9945..9950) /regulatory_class="ribosome_binding_site" /gene="yaaH" /locus_tag="STM0009" /note="putative RBS for yaaH; RegulonDB:STMS1H000405" gene complement(10092..10811) /gene="htgA" /locus_tag="STM0010" /db_xref="GeneID:1251528" CDS complement(10092..10805) /gene="htgA" /locus_tag="STM0010" /note="functions on sigma 32 promoters permitting growth at high temperature; similar to E. coli putative oxidoreductase (AAC73122.1); Blastp hit to AAC73122.1 (237 aa), 87% identity in aa 1 - 236" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459015.1" /db_xref="GI:16763400" /db_xref="GeneID:1251528" /translation="MNVTYLHDEDLDFLQHCSEEQLADFARLLTHNEKGKARLSSVLS HNELFKAMEGHPEQHRRNWQLIAGEFQHYGGDSIANKLRGHGKQYRAILLDVAKRLKL KADKSMSTFEIEQQLLEHFLRHTWQKMDAAHKQEFLQAVDAKVSELEELLPLLMKDRS LAKGVSHLLSTQLTRILRTHAAMSILGHGLLRGAGLGGPVGAALNGVKAMSGSAYRVT IPAVLQIACLRRMMAAVQA" regulatory complement(10806..10811) /regulatory_class="ribosome_binding_site" /gene="htgA" /locus_tag="STM0010" /note="putative RBS for htgA; RegulonDB:STMS1H000406" gene complement(10841..11255) /gene="yaaI" /locus_tag="STM0011" /db_xref="GeneID:1251529" CDS complement(10841..11245) /gene="yaaI" /locus_tag="STM0011" /note="similar to E. coli orf, hypothetical protein (AAC73124.1); Blastp hit to AAC73124.1 (134 aa), 81% identity in aa 1 - 134" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459016.1" /db_xref="GI:16763401" /db_xref="GeneID:1251529" /translation="MRSVLTISVGLLFGLALSSVAHANDHKILGVIAMPRNETNDLTL KIPVCRIVKRIQLTADHGDIELSGASVYFKTARSASQSLNVPSSIKEGQTTGWININS DNDNKRCVSKITFSGHTVNSSDMARLKVIGDD" regulatory complement(11250..11255) /regulatory_class="ribosome_binding_site" /gene="yaaI" /locus_tag="STM0011" /note="putative RBS for yaaI; RegulonDB:STMS1H000407" gene 11579..13509 /gene="dnaK" /locus_tag="STM0012" /db_xref="GeneID:1251530" regulatory 11579..11584 /regulatory_class="ribosome_binding_site" /gene="dnaK" /locus_tag="STM0012" /note="putative RBS for dnaK; RegulonDB:STMS1H000408" CDS 11593..13509 /gene="dnaK" /locus_tag="STM0012" /note="DNAK protein; heat shock protein 70; HSP70; involved in DNA biosynthesis and cell division; (SW:DNAK_SALTY)" /codon_start=1 /transl_table=11 /product="molecular chaperone DnaK" /protein_id="NP_459017.1" /db_xref="GI:16763402" /db_xref="GeneID:1251530" /translation="MGKIIGIDLGTTNSCVAIMDGTQARVLENAEGDRTTPSIIAYTQ DGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIGADNGDAW LDVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI AGLEVKRIINEPTAAALAYGLDKEVGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEV LATNGDTHLGGEDFDTRLINYLVDEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSA QQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDI NDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLL DVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASD NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN EEEIQKMVRDAEANAESDRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE SALNALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHAQQQAGSADASANNAKDD DVVDAEFEEVKDKK" gene 13577..14734 /gene="dnaJ" /locus_tag="STM0013" /db_xref="GeneID:1251531" regulatory 13577..13582 /regulatory_class="ribosome_binding_site" /gene="dnaJ" /locus_tag="STM0013" /note="putative RBS for dnaJ; RegulonDB:STMS1H000409" CDS 13595..14734 /gene="dnaJ" /locus_tag="STM0013" /note="chaperone protein DnaJ; GrpE; stimulates ATPase activity of DnaK; (SW:DNAJ_SALTY)" /codon_start=1 /transl_table=11 /product="molecular chaperone DnaJ" /protein_id="NP_459018.1" /db_xref="GI:16763403" /db_xref="GeneID:1251531" /translation="MAKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAE AKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFGGGFNGGADFSDIFGDVFG DIFGGGRGRQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQ PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVK IPAGVDTGDRIRLAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAM AALGGEIEVPTLDGRVMLKVPSETQTGKLFRMRGKGVKSVRGGAQGDLLCRVVVETPV GLSEKQKQLLKDLQESFGGPTGEKNSPRSKSFFDGVKKFFDDLTR" gene 15007..15961 /locus_tag="STM0014" /db_xref="GeneID:1251532" regulatory 15007..15012 /regulatory_class="ribosome_binding_site" /locus_tag="STM0014" /note="putative RBS for STM0014; RegulonDB:STMS1H000410" CDS 15014..15961 /locus_tag="STM0014" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC73704.1); Blastp hit to AAC73704.1 (300 aa), 25% identity in aa 8 - 296" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459019.1" /db_xref="GI:16763404" /db_xref="GeneID:1251532" /translation="MGSKGANKSFDYNLIKILDAVILSGNAAMAAKKLGITPAAVSLA LKRLQSYYPEELFSRGKGGLIPTAKAVDIHQNFSQVMKLVDDTFLCNSKKDEAFQITL LGSDIVESYYLSQLYNSDIFDRILINHFSVRNMSREHISELLFTAQGDLLISAEPLLE SGIENQIIDSFKSFVCICSSKHMLSTLSQLSLHHFYSSRHALYQPGMGASVIYHDSEL FKDDLYYTGRRIVGYRSDSLNGLMSMIERTSLIALIPLKLALFYKNHRKYDIKFIQPP PELALKSVQVYASWNKNSRNISTINEMVSMLQTLSSFRR" gene 16083..16432 /locus_tag="STM0015" /db_xref="GeneID:1251533" regulatory 16083..16088 /regulatory_class="ribosome_binding_site" /locus_tag="STM0015" /note="putative RBS for STM0015; RegulonDB:STMS1H000411" CDS 16088..16432 /locus_tag="STM0015" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459020.1" /db_xref="GI:16763405" /db_xref="GeneID:1251533" /translation="MSIPNHVSTTEVVLLELEILLTIISIGAWGGFVSYLLRKDKTEY NSSHESIKYCLTQIVISCFTSFLLSAIAIEKECSFNIVLLAAGLGGVFASPILKILGR RIKKIIEGNNSD" gene complement(16493..17033) /locus_tag="STM0016" /db_xref="GeneID:1251534" CDS complement(16493..17026) /locus_tag="STM0016" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459021.1" /db_xref="GI:16763406" /db_xref="GeneID:1251534" /translation="MNPIIDGIIALEGGYVFNPKDKGGATHWGITEATARAHGYAGDM RDLTHAEAYAILEEDYWIKPGFDVISTLSWPVSFELCDAAVNIGAYHPSAWLQRWLNV FNHEGKRYPDIHVDGNIGPRTLAALEHYLAWRGQEGEAVLVKALNCSQGTYYLNVAEK NHNNEQFIYGWIKNRVT" regulatory complement(17028..17033) /regulatory_class="ribosome_binding_site" /locus_tag="STM0016" /note="putative RBS for STM0016; RegulonDB:STMS1H000412" gene complement(17043..17493) /locus_tag="STM0017" /db_xref="GeneID:1251535" CDS complement(17043..17486) /locus_tag="STM0017" /note="similar to E. coli putative sensory transducer (AAC75886.1); Blastp hit to AAC75886.1 (269 aa), 30% identity in aa 3 - 109" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459022.1" /db_xref="GI:16763407" /db_xref="GeneID:1251535" /translation="MKTYIINSNCIYNEGKYELRTVSNSQVIKMTAMRAKCLSFIIEN AHLEIIERQKITTALWGSRSHYVNDANLTQILYLIRRDLKALGINDLFITIPRQGLKV NSDITIIATDSETKGRKKQIVRQTIAALTTVFSVTLGSLMYLHIH" regulatory complement(17488..17493) /regulatory_class="ribosome_binding_site" /locus_tag="STM0017" /note="putative RBS for STM0017; RegulonDB:STMS1H000413" gene 17860..19966 /locus_tag="STM0018" /db_xref="GeneID:1251536" regulatory 17860..17865 /regulatory_class="ribosome_binding_site" /locus_tag="STM0018" /note="putative RBS for STM0018; RegulonDB:STMS1H000414" CDS 17867..19966 /locus_tag="STM0018" /codon_start=1 /transl_table=11 /product="chitinase" /protein_id="NP_459023.1" /db_xref="GI:16763408" /db_xref="GeneID:1251536" /translation="MATSKLIQGDTITETTHAANGFDPATSDDKISYTSARVAKPVYN KYKNSTTKPKVFGYYTDWSQYDSRLQGNMSQPGRGYDLTKVSPTAYDKLIFGFVGITG FRKIDTEDRDVVAEAAALCGKVKYEPTFLDPWGDFQSYINLGFDVSGWDVDPKTVTQS NAKGLLGALRDMQAKAKAAGHTLALSMSIGGWSMSNGFHETAASDSSRKIFAKGVVKL FKQFPMFSEVDIDWEYPNNEGAGNPFGPEDGANYALLIAELRKQLDSAGLSNVKISIA ASAVTTIFDYAKVKDLMAAGLYGINLMTYDFFGTPWAETLGHHTNRKALEEGGWAVET IVDHLLAEGFSADRINIGYAGYTRNARQVEIESLSPLKGSYNPGSGPTTGSFESGTSE WYDVIYSYLDLENQKGRNGFNVYTDQVADADYLYSPESKLFLSLDTPRTVKAKGEYAA KLGLGGVFTWTIDQDNGVLVNAVREGLGYEIESEVIDMEPFYFEGINVEKDEEQSDSD DAQKVNHAPKAAIELMVVGGSTVQLSGAGSSDEDNDELSFSWGVPSQIDVADKTAEII EVVVPEVSEKTAFQFTLFVRDCYNEPSSQQRFVLTAVPALSQVQPEPEEEEEIIVPVP DEEEDTTPAEDDTPADDKTSPYAQWDASTVYGANWGSFEIVSWKGHNYQVKWWSMGNQ PDLNCGVGGAWTDLGAY" gene 20051..23054 /locus_tag="STM0019" /db_xref="GeneID:1251537" regulatory 20051..20056 /regulatory_class="ribosome_binding_site" /locus_tag="STM0019" /note="putative RBS for STM0019; RegulonDB:STMS1H000415" CDS 20058..23054 /locus_tag="STM0019" /codon_start=1 /transl_table=11 /product="chitinase" /protein_id="NP_459024.1" /db_xref="GI:16763409" /db_xref="GeneID:1251537" /translation="MTISIHASAFDVNSWYQKITLTFINESGNAVDMNHAAISFTASG HIDPWGNSGGTLKGNLPLTLNESSYGTLETNNIIINNSDALLLQPGERGTLSFSLAAT QVPVKMSAITLTLASSSSEDAESATPSDQETPAIPAADEQPAEPDVPEKDNDLQEHGL TLNVSELNTASWYQRVTFTLTNLYAQAVDLNQLQLNFTASAHPDPYSPFQGTMLGNQA VTLASDGGWPIEKNTITINHDGALILAAGDTAELQCYLAATQTPVAISDLNATLAHDP ARQGKVCVHFPAMTQTVALKPVIELLFPAGETRRFVGEWGEVLTIGDLSAGTYRLTVP VLANDEMQIAPVESSFTVTLQSGDAAAQVQVSCLPIVRYASARLMIDAPALGNAKLTV EIADATQADERTVTLIANQPQLITRLLAGHHYTVNLQPAMINNRFISAPIQLTGFIPA AAQIAEVAVAYQQSALDTASFVTVDATILGLPDGVAPQRYLFSSGKYQYSLMLESGSD RQTLALRFAPGLYDVQTDDIFIDSVPWRCEQAGPLRLLQKVNHVALEFLPGVTLQVKG WPDYLAHGGVTVNAPETVSLYRDIPFSALFKYDGFDGGGDPVPAAEVDVNGDGFLDYA TLPIHKTVALVRQIEKEAGRSVMPVMVIYTANASGGSALADLQDAQKLRNHFGNFITQ CLAAQSYKDETHPVPATFVLNPDFLGALQQGPYGYTVVRQKNSVPVNAQLAAAIQALP AMAGFIAPSLPTFSDDLYGYIQAVNYLVRQFAPDVAFGWQTNVWATGTADWVLRDTAD PVAEGQAIAGFIHELGVYSGEYAPDFIAFDKFECDCFSPDALAHYGWNATCWLNYLAM VKQVTKALLTPAMLWQIPGGHMPTVEEGVSKISAAHFASGGTFFMGDARIGSDPDTLS LQLLNTALNSATYGVPTVGDFLRKDKGYDWGQMQALNLPDFNVFSILWGGGSTISITT IHSNGEDGGWLADKMVEYYAAPRYFR" gene 23335..24039 /locus_tag="STM0020" /db_xref="GeneID:1251538" CDS 23335..24039 /locus_tag="STM0020" /note="similar to E. coli orf, hypothetical protein (AAC73478.1); Blastp hit to AAC73478.1 (222 aa), 32% identity in aa 21 - 222" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459025.1" /db_xref="GI:16763410" /db_xref="GeneID:1251538" /translation="MKKMMNDAFAKDNNENSLHSFLFSQQAKPHAAIDALFSALLPFG QPFTLGIGDEFYLQANDEHYIVLLESGVVSFCHDDKRLHISSSFAPSVVGMVDSYGAT YNVPARPEHFLLAETVCTGRFVRLPDFIKIADECDLWHDVARCLAYRLMVMSARDREL VGVDSYLKVRALLTEIWAYPQAYRESIIVLNFIQRRTGISRSRTMKILSELKKGGYIH IDNGRLTALGKLPVAY" gene 24462..25011 /gene="bcfA" /locus_tag="STM0021" /db_xref="GeneID:1251539" regulatory 24462..24467 /regulatory_class="ribosome_binding_site" /gene="bcfA" /locus_tag="STM0021" /note="putative RBS for bcfA; RegulonDB:STMS1H000416" CDS 24469..25011 /gene="bcfA" /locus_tag="STM0021" /note="fimbrial subunit (gi|4959511)" /codon_start=1 /transl_table=11 /product="fimbrial protein" /protein_id="NP_459026.1" /db_xref="GI:16763411" /db_xref="GeneID:1251539" /translation="MKKPVLALMVSAIAFGGMLSTAQADTTTVTGGTVNFVGQVVDAA CSVSADSVDQTVTLGQVRASKLTEAGMVANQKEDFTIKLEDCDTQTSQNAAVIFNGQQ DANQPGSLANTAGAGSATNVALQLYGPDGQALNIGESSSTVTLNDGENVIPLSVDYIA TGTATAGNVTATATFSMVYS" gene 25105..25798 /gene="bcfB" /locus_tag="STM0022" /db_xref="GeneID:1251540" regulatory 25105..25110 /regulatory_class="ribosome_binding_site" /gene="bcfB" /locus_tag="STM0022" /note="putative RBS for bcfB; RegulonDB:STMS1H000417" CDS 25112..25798 /gene="bcfB" /locus_tag="STM0022" /note="fimbrial chaperone (gi|4959512)" /codon_start=1 /transl_table=11 /product="fimbrial chaperone protein" /protein_id="NP_459027.1" /db_xref="GI:16763412" /db_xref="GeneID:1251540" /translation="MKKNVPIFLRLLLLLSAAGLSFAAQAGGIALGATRVIYPQGSKQ TSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGPSLP TDRESVFYLNSKAIPSVDKNKLTGNSLQIATQSVIKLFIRPKNLAEAPAHAPSTLRCR NERGQLTITNPSPYYVSMVELYSAGKKLPNTMVPPKGAITLPATPGQVSLRTVNDFGA TTPARVCPAS" gene 25803..28424 /gene="bcfC" /locus_tag="STM0023" /db_xref="GeneID:1251541" CDS 25803..28424 /gene="bcfC" /locus_tag="STM0023" /note="bovine colonization factor BcfC (gi|4530570)" /codon_start=1 /transl_table=11 /product="outer membrane usher protein" /protein_id="NP_459028.1" /db_xref="GI:16763413" /db_xref="GeneID:1251541" /translation="MRNQLFMTRYYSSVTKPVLTPLALAIALAPAPGWAENYFNPAFL SDDPSAVADLSTFSRNAQAAGMYRVDVYLNNTFLATRDIAFQAVKTTGKSAPTDDSGL RACLTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAARTRFDFAQQRLDISIPQA AMVASARGYIPPKYWDEGINALLLNYTFTGANSQDRSPGGSAENSYFLGLNSGLNLGA WRLRDYSTWNANSGDQNSDSDWQHISTYLERDVVFLQGELTAGDSYTPSALFDSLPFR GLQLASDDNMLPDSMKGFAPTIHGIARSNAQVTIRQNGYIINQRYVPPGAFTINDLYP TAASGDLTVEVKESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRSDSSQKEKVKF SQATLIWGLPHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQATSTLADNNT YQGQSLRFLYAKSLAQSGTNLQLMGYRYSTSGFYTLDDTTWKRMSGYDDDSRTDSDKS RPEWADYYNLYYTRRGKVQLDINQQLGGLGSLFITGSQQSYWHTDEKDSLLQVGYSDT LAGIAWSVSYNNNKSAGDAERDQIFALNISVPLSQWLQHGDEVTRHHNVYATFSTSTD KQHNVTQNAGLSGTLLDENNLSYNIQQGYQNHGIGESGAASLEYDGAKGNANIGYNVS DNGDYQQVNYGLSGGLVAHAHGVTLSQPLGNTNILIAAPGAANVGVVDQPGIHTDARG YAVVPYATTYRQNRMALDVNAMADDVDIDDAVTRVVPTEGALVLARFKARVGARALVT LNHNGKPVPFGATVTVNDRHAEAIVDEAGEVYLSGLSAQGVLHVRWGNLPDQQCVASY HLSSSRQILSRQHAECH" gene 28410..29432 /gene="bcfD" /locus_tag="STM0024" /db_xref="GeneID:1251542" regulatory 28410..28415 /regulatory_class="ribosome_binding_site" /gene="bcfD" /locus_tag="STM0024" /note="putative RBS for bcfD; RegulonDB:STMS1H000418" CDS 28425..29432 /gene="bcfD" /locus_tag="STM0024" /note="fimbrial subunit (gi|4959514)" /codon_start=1 /transl_table=11 /product="fimbrial protein" /protein_id="NP_459029.1" /db_xref="GI:16763414" /db_xref="GeneID:1251542" /translation="MKIPLLFALLAGSVVSQYAFADVCKNVNGVPSSINYDLTTTLTA EQNQVGKTVQLEKSQEVNVQAVCPAGASTYSQTYRSYVSPYPVVETSGNWKYLKLDPD YLEGGMRIEDSSAGDIYPPMNNVLMGYDENVKAGQPFYVRDSNLEFQLKIVKPFVGTV NISPKTMFNVYVMTAAGDPLTDVVYSILYSGTVTVPQSCEINAGQTILVNFGALYSGN FNHAGQKPEGVRAKKFSVPVKCSGLDSQVNLTMRLIATPDSHVPQAIASDNADVGVVV ETDEGNALIPNDVQSVAPFITDSAGRANITLQAYPVSTTGETPAEGAFTALASLRVDF D" gene 29418..29978 /gene="bcfE" /locus_tag="STM0025" /db_xref="GeneID:1251543" regulatory 29418..29423 /regulatory_class="ribosome_binding_site" /gene="bcfE" /locus_tag="STM0025" /note="putative RBS for bcfE; RegulonDB:STMS1H000419" CDS 29433..29978 /gene="bcfE" /locus_tag="STM0025" /note="fimbrial subunit (gi|4959515)" /codon_start=1 /transl_table=11 /product="fimbrial protein" /protein_id="NP_459030.1" /db_xref="GI:16763415" /db_xref="GeneID:1251543" /translation="MNRSHCALFAMGLMLCPQINASADDLAYNLEFTGTIVAQTCDID ISSLSQSIDLGQFAVGDFPSTGTTTKFKPFNINLKNCSRGITGAKIWFTGEPDPDNPA LLAITDTGMGSGNMLASGVGVEILNDDQDTISINNADSVVYPLKAGRNTLSFYIRYKS TRPTVTSGNATAVMYFDMQYE" gene 29977..30512 /gene="bcfF" /locus_tag="STM0026" /db_xref="GeneID:1251544" regulatory 29977..29982 /regulatory_class="ribosome_binding_site" /gene="bcfF" /locus_tag="STM0026" /note="putative RBS for bcfF; RegulonDB:STMS1H000420" CDS 29994..30512 /gene="bcfF" /locus_tag="STM0026" /note="fimbrial subunit (gi|4959516)" /codon_start=1 /transl_table=11 /product="fimbrial protein" /protein_id="NP_459031.1" /db_xref="GI:16763416" /db_xref="GeneID:1251544" /translation="MRNDILYGIGMLLAASGVQAHDGRVYVSGTITDNTCSLSPGSEN INVAMGAVSQRQFYRAGDGSAWQPFAIDLQNCGSTASGVTVSFSGAADSRNTDLLALT AGESDASGIGIALYDQNKTLIPLGQESDVVTLSPGQASAHLQFYARYLADGGAVTPGD ANASATFILAYE" gene 30466..31209 /gene="bcfG" /locus_tag="STM0027" /db_xref="GeneID:1251545" regulatory 30466..30471 /regulatory_class="ribosome_binding_site" /gene="bcfF" /locus_tag="STM0026" /note="putative RBS for bcfG; RegulonDB:STMS1H000421" CDS 30478..31209 /gene="bcfG" /locus_tag="STM0027" /note="fimbrial chaperone (gi|4959517)" /codon_start=1 /transl_table=11 /product="fimbrial chaparone" /protein_id="NP_459032.1" /db_xref="GI:16763417" /db_xref="GeneID:1251545" /translation="MPPQPSFLPMNKFFLRCAIYWCLLPISWAQAGVVIGGTRFIYHA GAPALSVPVSNRSEASWLIDTHILPGGRWPGTKNEGNIMPFVVTPPLFMLSARQENSM RVVYTGAPLPADRESLFTLSIAAIPSGKPEANRVQMAFRSALKLLYRPDGLAGNPQQA YRHLIWSLTPDGATVRNPTPYYVTLFLLRANERAQDNAGVVAPFATRQTDWCRHTVRC TVRWQSINDYGRVMPAQTVDLTRIH" gene 31270..32119 /gene="bcfH" /locus_tag="STM0028" /db_xref="GeneID:1251546" regulatory 31270..31275 /regulatory_class="ribosome_binding_site" /gene="bcfH" /locus_tag="STM0028" /note="putative RBS for bcfH; RegulonDB:STMS1H000422" CDS 31274..32119 /gene="bcfH" /locus_tag="STM0028" /note="unknown (gi|6650097)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459033.1" /db_xref="GI:16763418" /db_xref="GeneID:1251546" /translation="MYYHALKLSRLAMLTLAGVAVSASAIAADSAPTSQIGPTAEAYI VSHPDKVGEVVATYLAEHPEFLVAASETLHQRQQIAQQQAYVQLALQYRAELLSSSSP SVGPNEAKAAVVMFFDYQCSWCSKMAPVVENLIKANPDTRFIFKEFPIFSSRWPVSGL AARVGEQVWLTQGGAKYLDWHNALYATGKVEGALTEHDVYTLAQHYLTPTQLAAVKEA QSSGAVHDALLTNQALAQHMDFSGTPAFVVMPQTQDGDVKRVTVIPGSTTQDMLQMAI QKAKG" gene complement(32545..33000) /locus_tag="STM0029" /db_xref="GeneID:1251547" CDS complement(32545..32994) /locus_tag="STM0029" /note="putative transcriptional regulator MarT (gi|4324612)" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_459034.1" /db_xref="GI:16763419" /db_xref="GeneID:1251547" /translation="MRQYTINNEFIYNESLREIISLHDKKVLKVTLMRARCLSYLFEN AYKKLITREMISHAVWGERSQFVSDANLTQLLYLLRRDLQQIGLFELFVTLPRQGIKI DERFIIDAADIPPQAIQYHTHRCNKIISIGIPTLFLLFVLFFLAPFI" regulatory complement(32995..33000) /regulatory_class="ribosome_binding_site" /locus_tag="STM0029" /note="putative RBS for STM0029; RegulonDB:STMS1H000423" gene 33357..34368 /locus_tag="STM0030" /db_xref="GeneID:1251548" regulatory 33357..33362 /regulatory_class="ribosome_binding_site" /locus_tag="STM0030" /note="putative RBS for STM0030; RegulonDB:STMS1H000424" CDS 33364..34368 /locus_tag="STM0030" /note="leuO homolog (gi|6650098)" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_459035.1" /db_xref="GI:16763420" /db_xref="GeneID:1251548" /translation="MRPIKNAKKIDYNLIKVFDTVITEGNATRAARKLDVTPAAISQA LLRLQNLYGEELFIRTRKGLVPSSKGKSLHQVFRQAIESIESTLCDKTDAQESNELIV LGGDITENYYFPALLDTVLMNRYIIKHYAIKKTGEYSPASMLTHGYADVIMGILEIKN EMIESYLIDNLSDFVCVCGEKSPLVGLEKMSLYNFYAARHAVYHSDMFSSFTADSIDL FKSSTPYAGRREIGYYSDSLFGVIDIVEKSDMVAILPGKIATYFRDVRRYNIKILRMP DEMIFRTLPVYAYLATNSTHYKNVKKLISTFQSTFLFSQEKQPDALVEGSTSLCDLSV " gene complement(34376..34816) /locus_tag="STM0031" /db_xref="GeneID:1251549" CDS complement(34376..34816) /locus_tag="STM0031" /note="putative transcriptional regulator MarT (gi|4324612)" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_459036.1" /db_xref="GI:16763421" /db_xref="GeneID:1251549" /translation="MTIYLINSTHTYNDKTNELKKIKTGKMIKIAAMRIKCLEYMLNH AQQEIIYKKQLTNELWGERSQFISDANLTQILYLLRRDLKGFGLSQFFSTVPRTGIKV DANIIISNENKSCLPSSLKKEEYKYMALFFALLTMVIMVIYLIR" gene 35331..37057 /locus_tag="STM0032" /db_xref="GeneID:1251550" regulatory 35331..35336 /regulatory_class="ribosome_binding_site" /locus_tag="STM0032" /note="putative RBS for STM0032; RegulonDB:STMS1H000425" CDS 35339..37057 /locus_tag="STM0032" /codon_start=1 /transl_table=11 /product="putative arylsulfatase" /protein_id="NP_459037.1" /db_xref="GI:16763422" /db_xref="GeneID:1251550" /translation="MNKKSSSMVNMPAPREPINQKIDTNNALVLNHNAIYEQRLAEIT QSNTCDKAIVTVNPYGTAPLSLYLGVWMDEAAALEINVVDSEATTEEVRYQYDVHPGA NLIPVCGMVSAVNNQITLRLASQIVGQYTVMTDALPPTDSANVSLGFPIISVSCPAQQ ASLMEEGLYFSTYFDRYNLAFDHNGIVRWYVSQEIPSYNFVRMDNGHFLATSQGINHC LNMYEFDIMGRVYTVYLLDNEFHHSILPIENNLAIAPSEYSNGRPDGYSTGKDGVSII NLSTGLEVAYYDMLYVMDYSRSPRPSGSAPGQDVSMDDWLHINQSYINEPNNLLICSG RHQSAIFGVNVDSGELRFIMANHEDWSDEFKQYLLTPVDDDGVPLYDLTSPGGIDAAD KNFWTWGQHNIVEIPNDEPGILEFMVFDNGNYRSREDAKSLLPLDNFSRVVQFKINLN TMTVTRPYEYGKTEVGNRGYSSFVSAKHLLTNGHLVIHFGATTVDEFEHTITAQPGSS DLVDPDEGQQALGRLVLQEINKETKEVLFEAMVTSGYFKNEETNGTNYRYDISAFRVY KMPLFA" gene complement(37103..38674) /locus_tag="STM0033" /db_xref="GeneID:1251551" CDS complement(37103..38674) /locus_tag="STM0033" /note="similar to E. coli UDP-sugar hydrolase (5'-nucleotidase) (AAC73582.1); Blastp hit to AAC73582.1 (550 aa), 26% identity in aa 1 - 253, 32% identity in aa 386 - 506" /codon_start=1 /transl_table=11 /product="multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'-nucleotidase/3'-nucleotidase" /protein_id="NP_459038.1" /db_xref="GI:16763423" /db_xref="GeneID:1251551" /translation="MVYMNKKFSISLLSLCIGLSSAISFSADARDITIYYTNDLHAHV TPEIIPYVSKTRPVGGFAPISKIVKDAKAKEKDVFFFDAGDYFTGPFISTLTKGEAII DILNTMPYDAVSVGNHEFDHGHENLVKQLSKLQFPVLLDNVFYSGTDTPLIKEPYTIV EKDGFKIGVIGMHGVSAFYEAIAAGVREGVDCRDPIPYVKKQLEELKGKVDLTVLLAH EGVPGMQSSAGEADVARALKTDVDMAKSLEGYGLNVLITGHAHKGTPEPIKVGDTLVV STDAYTIELGKLVLDWNPETKKVDSYNGKLITMYADTYKPDPVTQAKIDEWDNKVKKI TDEVVAHSPEVLTRSYGESAPTGNLITDALMATVPGADASFYNAGGIRTELPKGNITY GDVLSMYPFTNDVMSMEISGKDLKSIMSHAADLKNGMLHVSKTVQFKYDSTKPLGQRI VEFDIKGKPVEDNKLYTVALDSFIGKGGGGFTFTKGKNIKYIGIQTAPALVNYMKQVN NIQPDHTMRVDDISK" gene complement(38773..39540) /locus_tag="STM0034" /db_xref="GeneID:1251552" CDS complement(38773..39534) /locus_tag="STM0034" /note="similar to E. coli putative sugar hydrolase (AAC75461.1); Blastp hit to AAC75461.1 (254 aa), 34% identity in aa 2 - 254" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459039.1" /db_xref="GI:16763424" /db_xref="GeneID:1251552" /translation="MKNKKYINSLLAACVLFSCFNGQAAELKRVYGKLSFGYGDWNKG FVNVDRGEVWKAVADFGAVFDRGEFASFYEMNVLNHPVEGRNHVTQFLGHYRVVEGSN FTAMMKLYMSMENKFGDELNMMYGVGYLGLTSPSGFIKPYFAVHNLSNDYTSKKYGQA TGFNGYVLGWVAAYNFDMFNEKFVISNWNEVEMDRNDAYAEQQGGTTGLNGAVTFTWK FMPRWTASVSYRYFNNKLGYDGYGDRMNYLIGFEF" regulatory complement(39535..39540) /regulatory_class="ribosome_binding_site" /locus_tag="STM0034" /note="putative RBS for STM0034; RegulonDB:STMS1H000426" gene 40120..41624 /locus_tag="STM0035" /db_xref="GeneID:1251553" regulatory 40120..40125 /regulatory_class="ribosome_binding_site" /locus_tag="STM0035" /note="putative RBS for STM0035; RegulonDB:STMS1H000427" CDS 40131..41624 /locus_tag="STM0035" /note="similar to E. coli putative sulfatase (AAC76701.1); Blastp hit to AAC76701.1 (497 aa), 26% identity in aa 2 - 420" /codon_start=1 /transl_table=11 /product="putative arylsulfatase" /protein_id="NP_459040.1" /db_xref="GI:16763425" /db_xref="GeneID:1251553" /translation="MKRTVVASMIGLALCAGCVLSTAQAATAKRPNLVIILADDLGYG DLATYGHRIVKTPNIDKLAQEGVKFTDYYAPAPLCSPSRAGLLTGRMPFRTGIRSWIP EGKDVALGRNELTIANLLKQQGYDTAMMGKLHLNAGGDRTDQPQAKDMGFDYTLVNPA GFVTDATLDNAKERPRYGVVHPTGWIRNGQHIGRADKMSGEFVSSEVVNWLDNKKDDN PFFLYVAFTEVHSPLASPKKYLDMYSQYMTDYQKQHPDLFYGDWADKPWRGTGEYYAN ISYMDEQVGKVLDKIKAMGEEDNTIVIFTSDNGPVTREARKVYELNLAGETDGLRGRK DNLWEGGIRVPAIIKYGKHIPQGMVTDTPVYGLDWLPTLANMMDFKLPTDRTYDGQSL VPLLKDKTLKRQKPLIFGIDMPFQDDPTDEWAIRDGDWKMIIDRQNKPKYLYNLKTDR FETLNQIGKQPQIEKQLYGKFLKYKKDIDNDSLMKARGDKPTPVTWG" gene 41717..42913 /locus_tag="STM0036" /db_xref="GeneID:1251554" regulatory 41717..41722 /regulatory_class="ribosome_binding_site" /locus_tag="STM0036" /note="putative RBS for STM0036; RegulonDB:STMS1H000428" CDS 41723..42913 /locus_tag="STM0036" /note="similar to E. coli putative arylsulfatase regulator (AAC76803.1); Blastp hit to AAC76803.1 (411 aa), 46% identity in aa 8 - 401" /codon_start=1 /transl_table=11 /product="anaerobic sulfatase maturase" /protein_id="NP_459041.1" /db_xref="GI:16763426" /db_xref="GeneID:1251554" /translation="MMFGKSCQVMVKPTGSVCNLDCKYCFYLEKEKLYPDRKNHYKMS EETLELFIRQQIAAQDIDEVIFAWQGGEPTLMGIPFYRKAVEFQQRYCGGKTIVNTFQ TNGILINDDWATFFREHDFLVGVSIDGDAALHDEWRVTRSGKPTHEKVENAVRCLAQH DVEFNTLTVVNRTNMHHPVQVYRYLKSIGSRYMQFIPLVERCGENGLAQPQDKHIAMT PWSVDSLQFGQFLNAVFDIWIREDIGDIGIQLFEQTLAAWCGLPPQVCVFAPTCGSAF AMEMNGDVYNCDHFVYPQFKLGNIHQKTLRQMNQGEQNRQFGSDKQRSMAQECHRCQW KFACYGGCPKHRFLPSASGATNHNYLCAGYQAFFSHTATAMSAMRTLYEKGISPAEIK SIFV" gene 42926..44185 /locus_tag="STM0037" /db_xref="GeneID:1251555" regulatory 42926..42931 /regulatory_class="ribosome_binding_site" /locus_tag="STM0037" /note="putative RBS for STM0037; RegulonDB:STMS1H000429" CDS 42932..44185 /locus_tag="STM0037" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459042.1" /db_xref="GI:16763427" /db_xref="GeneID:1251555" /translation="MNMFSHINVDACKTPGCKNLGILGSPDYLPQGKNVLCRACGFLF PIISARSLNLFRQAANQPWKGLVKSCPHCGGTSLKKYGFSTKGERRMYCRQCNKTFIS YTAIRSDARQENLATLIGEGASLVEIRAALAIDSTGFSRELQKLSRRANQAERDFVFP AFDIAMSTRAFRVKFNGGDSSLYVLVTAEEESGKVVAISTNYSAQPVEADYQYHSDYE ERLPSGTLAHLVQRKEALTMRRNVLFDVDYGPAVLYKNDPGMLVKPVLPAYRHFELVQ ALTDERSLNVQHYLDHECFILGGCMMANFSYLRQGRCHISFVRERGVTPPKRDLPPRL FLSGGIRNNVWRTFSTRDYAMAVCNLTGNKKVSLLRHATLNSATAFIRYVHNHPFLPH LNRMSPGNVVAVLDYLKFEYNASRN" gene 44305..46027 /locus_tag="STM0038" /db_xref="GeneID:1251556" regulatory 44305..44310 /regulatory_class="ribosome_binding_site" /locus_tag="STM0038" /note="putative RBS for STM0038; RegulonDB:STMS1H000430" CDS 44312..46027 /locus_tag="STM0038" /codon_start=1 /transl_table=11 /product="putative arylsulfatase" /protein_id="NP_459043.1" /db_xref="GI:16763428" /db_xref="GeneID:1251556" /translation="MNTLTTTSVVLPAPRPAINQGIDINNEMVLNHTAIYENCLAQVT QENTVENALMLLDPYGTAPLSAYAGVWSLEPAEIIVTVQDAAKTAMPVEHLYTLTAGA NLLPVLGLVADTENRIVFSQADTPLAVYTLITQPLPPVDSAEVVLGFPIINVTQPATD ANKMAPGFYFITHFDRYNYALDQNGLVRWYVTQDYPSYNFVRIDNGHFLTTSEAKNTY LDMYEFDMMGRLHTFYNLDNQFHHSIWPWDSNTIVAPSEYTSGRPDDLKTNEDGVSVV DLTTGLETAYYDMAKVLDTTRVSRPSGTAPGEDPTVKDWLHINQSYVNETNQLLIASG RHQSAVFGVDLQTQALRFILSTHEDWDDAYQPYLLTPVDSEGVALYDFSKQEDIDAAD RDFWTWGQHNVVEIANNTPGIVEFMVFDNGNYRSRDDSKSLLPPDNYSRIVHFVVNMN EMTVMRPFEYGKELGARGYSSCVSAKAIQQNGNIVVHFADCTFDENGRAISCQPGESD IIDPQAGSEAMGLLILQEIAPTEKTVLFEATMTSGYYKNAETNGEGYRYDITSFRVYK MDLYA" gene 46083..47356 /gene="nhaA" /locus_tag="STM0039" /db_xref="GeneID:1251557" regulatory 46083..46091 /regulatory_class="minus_35_signal" /gene="nhaA" /locus_tag="STM0039" /note="putative -35_signal for nhaA; RegulonDB:STMLTH004626" regulatory 46110..46118 /regulatory_class="minus_10_signal" /gene="nhaA" /locus_tag="STM0039" /note="putative -10_signal for nhaA; RegulonDB:STMLTH004626" regulatory 46179..46184 /regulatory_class="ribosome_binding_site" /gene="nhaA" /locus_tag="STM0039" /note="putative RBS for nhaA; RegulonDB:STMS1H000431" CDS 46190..47356 /gene="nhaA" /locus_tag="STM0039" /note="similar to E. coli Na+/H antiporter, pH dependent (AAC73130.1); Blastp hit to AAC73130.1 (388 aa), 92% identity in aa 1 - 384" /codon_start=1 /transl_table=11 /product="Na(+)/H(+) antiporter NhaA" /protein_id="NP_459044.1" /db_xref="GI:16763429" /db_xref="GeneID:1251557" /translation="MKHLHRFFSSDASGGIILIIAAALAMLMANMGATSGWYHDFLET PVQLRVGALEINKNMLLWINDALMAVFFLLIGLEVKRELMQGSLASLRQAAFPVIAAI GGMIVPALLYLAFNYSDPVTREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALA IIDDLGAIVIIALFYTSDLSIVSLGVAAFAIAVLALLNLCGVRRTGVYILVGAVLWTA VLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSL QGVTIDGLTSMLPLGIIAGLLIGKPLGISLFCWLALRFKLAHLPQGTTYQQIMAVGIL CGIGFTMSIFIASLAFGNVDPELINWAKLGILIGSLLSAVVGYSWLRARLNAPA" gene 47407..48317 /gene="nhaR" /locus_tag="STM0040" /db_xref="GeneID:1251558" regulatory 47407..47412 /regulatory_class="ribosome_binding_site" /gene="nhaR" /locus_tag="STM0040" /note="putative RBS for nhaR; RegulonDB:STMS1H000432" CDS 47418..48317 /gene="nhaR" /locus_tag="STM0040" /note="LysR family; similar to E. coli transcriptional activator of nhaA (AAC73131.1); Blastp hit to AAC73131.1 (301 aa), 92% identity in aa 1 - 296" /codon_start=1 /transl_table=11 /product="transcriptional activator of nhaA" /protein_id="NP_459045.1" /db_xref="GI:16763430" /db_xref="GeneID:1251558" /translation="MSMSHINYNHLYYFWHVYKEGSVVGAAEALFLTPQTITGQIKAL EERLQGKLFKRKGRGLEPSELGELVFRYADKMFTLSQEMLDIVNYRKESNLLFDVGVA DALSKRLVSSVLDAAVVVDEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQE GLFSVKIGECSVSFWCTNPLPEKAFPACLEERRLLVPGRRSMLGRKLLNWFNSQGLQV EILGEFDDAALMKAFGATHDAIFVAPSLYSLDFYADESVIEIGRVENVMEEYHAIFAE RMIQHPAVQRICNADYSALFKLQ" gene complement(48372..50417) /locus_tag="STM0041" /db_xref="GeneID:1251559" CDS complement(48372..50411) /locus_tag="STM0041" /note="similar to E. coli orf, hypothetical protein (AAC76680.1); Blastp hit to AAC76680.1 (772 aa), 25% identity in aa 116 - 547, 27% identity in aa 549 - 665, 25% identity in aa 84 - 149" /codon_start=1 /transl_table=11 /product="family 31 glucosidase" /protein_id="NP_459046.1" /db_xref="GI:16763431" /db_xref="GeneID:1251559" /translation="MPFMQQDPRRLVWQQNDRYLWIEPWGENSLRVRSGRHLPVMRNE DWALTEPVAESQCHIDYEHHQATLTNGKIIAIVNQKGQVTFYRHPHKPLLQEFWRLRG EIGEDESSHGQYVSALNLEGREFRPIQGGKYSLKARFEATEGEKIYGMGQYQQANLDL KGCVLELAQRNSQASVPFMLSSLGYGFLWNNPAVGRVTFAQNVTEWEAQVSEQLDYWI TAGDTPAEISRAYALATGTPPMMPDYAMGFWQCKLRYRTQEELLEVAREYKRRNLPIS VIVIDFFHWPNQGDWMFDARDWPDPDAMIAELKSLGIELMVSVWPTVDNRTESYREMR ENGWLVQTERGLPINMDFLGNTTYFDATHPGARDYVWGKAKRNYYDKGVKLFWLDEAE PEFSVYDYDNYRYHAGPVLEVGNIYPRMYAKTFFDGMKADGEDQVINLLRCAWAGSQK YGALVWSGDIHSSFRSLRNQFAAGLNMGIAGIPWWTTDIGGFHGGNIHDPKFHELLIR WFQWGVFSPVMRLHGNRDPQILPAQPYRDGIAQCPTGAPNEVWSYGEEVCEVLTGCLA LREKLKPYIKALMEETHKHNTPVMRPLFFEFPEQETSWTITDQYCFGPDLLIAPVMHE GMRERDVWLPEGETWTDLATGESYSGGQTLQYATPLNRIPVFIREGGQYRSLLNL" regulatory complement(50412..50417) /regulatory_class="ribosome_binding_site" /locus_tag="STM0041" /note="putative RBS for STM0041; RegulonDB:STMS1H000433" gene complement(50451..51829) /locus_tag="STM0042" /db_xref="GeneID:1251560" CDS complement(50451..51824) /locus_tag="STM0042" /note="similar to E. coli putative permease (AAC76681.1); Blastp hit to AAC76681.1 (479 aa), 29% identity in aa 22 - 457" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_459047.1" /db_xref="GI:16763432" /db_xref="GeneID:1251560" /translation="MSSVIEDTQPSGSASLSLLQRISYGSLDVAGNLLYCFSSTYILY FYTDVAGISLAVAGVILLLARIIDGIDAPIWGIIIDKTRSRYGKCRPWFLWLPLPFAV FSALSFWSPDISMTGKAIYAAISYMIASILFTGLNTPLSAILPLMTLSPKERLVLNSW RMTGGQIGVLLMNATALPLVAFLGNGDDHAGFIYTAITFAIISCALTLFAFKNIREMD TDKIQHEPKLPMKKSFAAMKGNWPWILMVLANLIFWIALQQRNTTIVYYLTYNLDRKD LVPLINSLATIQILFIIAIPFFSKYLAKTWIWVGGLLVATFGGVMMWLAADNITFLIA AWILGNIGSGIACSMPFAMLGFAVDFGAWKTGIKATGILIAFGSTFCIKMGSGLGTAF AAWIMNSFGYVPNHAQSAAGLEGIIWAFIWAPALLFALAAIPLLFFRKYEAMEEKIRH DLETVNS" regulatory complement(51824..51829) /regulatory_class="ribosome_binding_site" /locus_tag="STM0042" /note="putative RBS for STM0042; RegulonDB:STMS1H000434" gene complement(52280..52550) /gene="rpsT" /locus_tag="STM0043" /db_xref="GeneID:1251561" CDS complement(52280..52543) /gene="rpsT" /locus_tag="STM0043" /note="30S ribosomal protein S20. (SW:RS20_SALTY)" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S20" /protein_id="NP_459048.1" /db_xref="GI:16763433" /db_xref="GeneID:1251561" /translation="MANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDK AAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA" regulatory complement(52545..52550) /regulatory_class="ribosome_binding_site" /gene="rpsT" /locus_tag="STM0043" /note="putative RBS for rpsT; RegulonDB:STMS1H000435" gene 52649..52864 /gene="yaaY" /locus_tag="STM0044" /db_xref="GeneID:1251562" CDS 52649..52864 /gene="yaaY" /locus_tag="STM0044" /note="similar to E. coli orf, hypothetical protein (AAC73135.1); Blastp hit to AAC73135.1 (72 aa), 71% identity in aa 3 - 72" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459049.1" /db_xref="GI:16763434" /db_xref="GeneID:1251562" /translation="MQHSLRSDGAGFYQLACCEYSLSMRKIALSGGFWGGVCRMAMKS IFFMFHQGNRRLTLTAVQGILLRFSLF" gene 52872..53810 /gene="ribF" /locus_tag="STM0045" /db_xref="GeneID:1251563" CDS 52872..53810 /gene="ribF" /locus_tag="STM0045" /EC_number="2.7.1.26" /EC_number="2.7.7.2" /note="similar to E. coli putative regulator (AAC73136.1); Blastp hit to AAC73136.1 (313 aa), 89% identity in aa 1 - 309" /codon_start=1 /transl_table=11 /product="riboflavin biosynthesis protein RibF" /protein_id="NP_459050.1" /db_xref="GI:16763435" /db_xref="GeneID:1251563" /translation="MKLIRGIHNLSQAPHGCVLTIGNFDGVHRGHRALLQGLQEEGRR RGLPVVVMIFEPQPLELFATDKAPARLTRLREKLHYLAQCGVDYVLCVKFDRRFAALT AQTFISELLVERLGVQFLAVGDDFRFGASRAGDFLLLQKAGAEYGFAVSSTQTFCEGG VRISSTAVRQALAEDNLALAESLLGHPFTISGRVVHGDELGRTIGFPTANLPLRRQVS PVKGVYAVEVTGLGDKPLPGVANIGTRPTVAGVRQQLEVHLLDVVMDLYGRHIDVILR KKIRNEQRFASLDELKAQIARDELTARKFFGLAGQV" gene 53838..56689 /gene="ileS" /locus_tag="STM0046" /db_xref="GeneID:1251564" regulatory 53838..53843 /regulatory_class="ribosome_binding_site" /gene="ileS" /locus_tag="STM0046" /note="putative RBS for ileS; RegulonDB:STMS1H000436" CDS 53855..56689 /gene="ileS" /locus_tag="STM0046" /EC_number="6.1.1.5" /note="similar to E. coli isoleucine tRNA synthetase (AAC73137.1); Blastp hit to AAC73137.1 (938 aa), 87% identity in aa 1 - 938" /codon_start=1 /transl_table=11 /product="isoleucine--tRNA ligase" /protein_id="NP_459051.1" /db_xref="GI:16763436" /db_xref="GeneID:1251564" /translation="MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAA KKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGFDSPYVPGWDCHGLPI ELKVEQEFGKPGEKFTAAEFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFK TEANIIRALGRIIKNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFRAVD QDAVKAKFGLPGVSGPVSLVIWTTTPWTLPANRAISLAPDFDYALVQIDGQAVILAKD LVESVMQRIGAAEYTILGTVKGAELELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHT APGHGPDDYVIGQKYGLETANPVGPDGTYLPGTYPTLDGVNVFKANDIVIELLKEKGA LLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDKEGLRQQSLKEIKGVQWIPDWGQA RIESMVANRPDWCISRQRTWGVPMSLFVHKETQELLPIERTLAAMEEVAKRVEVDGIQ AWWDLDPKEILGEDADQYEKVPDTLDVWFDSGSTSYSVVDARPEFAGHAADMYLEGSD QHRGWFMSSLMISVAMKGKAPYRQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGA DILRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNGFNPATDMVKPEE MVVLDRWAVGCAKTAQQEILKAYEAYDFHEVVQRLMRFCSVEMGSFYLDIIKDRQYTA KADSVARRSCQTALYHIAEALVRWMAPIMSFTADEIWGYLPGEREKYVFTGEWYDGLF GLEENEEFNDAFWDDVRYIKDQVNKELENQKANGIKSNLEAKVTLKYADDANGTIKKL KLLGEEVRFIFITSQFVISEQAGGIDDENIQYNAGNTTVQAVVTRAEGDKCPRCWHYT TDVGKVAEHADICGRCVSNIAGNGEQRKFA" gene 56689..57189 /gene="lspA" /locus_tag="STM0047" /db_xref="GeneID:1251565" CDS 56689..57189 /gene="lspA" /locus_tag="STM0047" /EC_number="3.4.23.36" /note="similar to E. coli prolipoprotein signal peptidase (SPase II) (AAC73138.1); Blastp hit to AAC73138.1 (164 aa), 92% identity in aa 1 - 164" /codon_start=1 /transl_table=11 /product="signal peptidase II" /protein_id="NP_459052.1" /db_xref="GI:16763437" /db_xref="GeneID:1251565" /translation="MSKPLCSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVGLFP SLNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGICVILLVMMYRSKATQKLNNIAYA LIIGGALGNLFDRLWHGFVVDMIDFYVGNWHFATFNLADSAICIGAALIVLEGFLPKP TAKEQA" gene 57328..57793 /gene="slpA" /locus_tag="STM0048" /db_xref="GeneID:1251566" regulatory 57328..57333 /regulatory_class="ribosome_binding_site" /gene="slpA" /locus_tag="STM0048" /note="putative RBS for slpA; RegulonDB:STMS1H000437" CDS 57344..57793 /gene="slpA" /locus_tag="STM0048" /EC_number="5.2.1.8" /note="similar to E. coli probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerase (a rotamase) (AAC73139.1); Blastp hit to AAC73139.1 (149 aa), 91% identity in aa 1 - 149" /codon_start=1 /transl_table=11 /product="peptidylprolyl isomerase" /protein_id="NP_459053.1" /db_xref="GI:16763438" /db_xref="GeneID:1251566" /translation="MSKSVQSNSAILVHFTLKLDDGSTAESTRNNGKPALFRLGDTSL SEGLEQQLLGLKEGEKKAFSLEPDAAFGVPSPDLIQYFSRREFMAAGEPEVGAIMLFT AMDGSEMPGVIREINGDSITVDFNHPLAGHTVHFDIEVLEIDPALEA" gene 57782..58746 /gene="lytB" /locus_tag="STM0049" /db_xref="GeneID:1251567" regulatory 57782..57787 /regulatory_class="ribosome_binding_site" /gene="slpA" /locus_tag="STM0048" /note="putative RBS for lytB; RegulonDB:STMS1H000438" CDS 57796..58746 /gene="lytB" /locus_tag="STM0049" /note="similar to E. coli control of stringent response; involved in penicillin tolerance (AAC73140.1); Blastp hit to AAC73140.1 (316 aa), 93% identity in aa 1 - 316" /codon_start=1 /transl_table=11 /product="4-hydroxy-3-methylbut-2-enyl diphosphate reductase" /protein_id="NP_459054.1" /db_xref="GI:16763439" /db_xref="GeneID:1251567" /translation="MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRY VVDSLRKRGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKV HMEVARASRRGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPEDVWTLNVKNEGK LSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQADVVL VVGSKNSSNSNRLAELAQRMGRTAFLIDDAADIQEAWVKEAACVGVTAGASAPDILVQ NVIARLREFGGGEAVTLEGREENIVFEVPKELRVDVREVE" gene 58940..60148 /locus_tag="STM0050" /db_xref="GeneID:1251568" regulatory 58940..58945 /regulatory_class="ribosome_binding_site" /locus_tag="STM0050" /note="putative RBS for STM0050; RegulonDB:STMS1H000439" CDS 58946..60148 /locus_tag="STM0050" /codon_start=1 /transl_table=11 /product="putative nitrite reductase" /protein_id="NP_459055.1" /db_xref="GI:16763440" /db_xref="GeneID:1251568" /translation="MGKIKYGLPTLLAIGFWMDATSATVLELPAWERNYTGTIAGKPV NVNITRFGNSLNGYYCYEPCNQHKAVIVLRGSLQDKEVHLEERVKALSGYWNAEISSS EIKGEWTSADKKRHFPVALIYYKPKNSPDIVLVTNTNDAGGYDPSKEIDCGNTPAISA IKLYRDGKLIQTLDTASVGTCSPFMPQWGDVNFDGYPDLSIVTELLAGPDAPVQTWLY DPAKQRYVDAPASYQEITSPEIDAEHKQIVSYWRGGCCSHGVNVYRWKGKTIELIDRG ESYFQPVISKGKMYNCYMTPSYADGRIIYPLVRKNGHLTPPLSLDGTCQSFWLTGNVR TVIQAEKPGAEPESLEIQWQENKASPGRFCPLVPFVEGDKLSPRLVTDDDVPDACISR AEYEDIKQ" gene 60151..61084 /gene="rihC" /locus_tag="STM0051" /db_xref="GeneID:1251569" regulatory 60151..60156 /regulatory_class="ribosome_binding_site" /gene="rihC" /locus_tag="STM0051" /note="putative RBS for rihC; RegulonDB:STMS1H000440" CDS 60164..61084 /gene="rihC" /locus_tag="STM0051" /note="similar to E. coli orf, hypothetical protein (AAC73141.1); Blastp hit to AAC73141.1 (304 aa), 80% identity in aa 3 - 303" /codon_start=1 /transl_table=11 /product="ribonucleoside hydrolase RihC" /protein_id="NP_459056.1" /db_xref="GI:16763441" /db_xref="GeneID:1251569" /translation="MTASLHIILDTDPGIDDAAAIAAALFAPQLDLQLITTVAGNVSV EKTTRNALQLLHFWNSDIPLAQGAATPLLRPLRDAAYVHGESGMEGYDFVDHQRQPLA KPAFIAIRDVLMNAPEPMTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGSAGRGNF TPNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDFLNKLPALNRTGKMLHS LFNHYRSGSMRTGVRMHDLCAIAWLVRPELFTLQSCFVAVETQGQYTAGTTVVDIEGR LGQPANAQVALALDVDGFRQWVAEVFAYAP" gene complement(61106..61797) /locus_tag="STM0052" /db_xref="GeneID:1251570" CDS complement(61106..61792) /locus_tag="STM0052" /note="similar to E. coli sequence similarity to Shigella regulator (AAC73721.1); Blastp hit to AAC73721.1 (226 aa), 47% identity in aa 5 - 223" /codon_start=1 /transl_table=11 /product="response regulator" /protein_id="NP_459057.1" /db_xref="GI:16763442" /db_xref="GeneID:1251570" /translation="MDSITTLIVEDEPMLAEILVDTIKIFPQFSIVGIADKLESAKKQ IRLYQPQLILLDNFLPDGKGIDLIRHTISTNYTGRIIFITADNHMDTISDALRMGVFD YLIKPVHYQRLQHTLERFTRYRSSLRSSEQANQTHVDALFNIQAKEQTAEPNSGLRGI DENTFNRVRQIFADPQAVHTADTLAQILGSSKTTARRYLEQGVKNNFLEAEISYGKVG RPERLYRGKV" regulatory complement(61792..61797) /regulatory_class="ribosome_binding_site" /locus_tag="STM0052" /note="putative RBS for STM0052; RegulonDB:STMS1H000441" gene complement(61794..63413) /locus_tag="STM0053" /db_xref="GeneID:1251571" CDS complement(61794..63413) /locus_tag="STM0053" /note="histidine kinase for citrate; similar to E. coli putative sensor-type protein (AAC73720.1); Blastp hit to AAC73720.1 (552 aa), 42% identity in aa 12 - 538" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="NP_459058.1" /db_xref="GI:16763443" /db_xref="GeneID:1251571" /translation="MFIREITRWFARHSFQNRIFLLILFTSTIVMLAITWYLTDITKE RLHYQVGQRALIQAMQISAMPELVEAVEAHDLSRIKALIDPMRSFSDATYITVGNEKG QRLYHVNPDEIGKYMEGGDSDDALYNAKSYVSVRKGSLGSSLRGKSPIQDSTGKVIGI VSVGYTLEQLESWLNLQISSLLFPMALLLLVLLYCARRFSLHIKKQMLNMEPQQLSQL LIQQSVLFESVFEGLIAIDSHHRITAINQTARRLLNLSQPESELIGYAIHHVVLPEAF FYDAPQKNKKDEIVTFNQMKVIASRMAVIIDNQPQGWVISFRNKDDINTLSLQLSQVR QYADNLRAVQHEHRNLISTIAGLLFLKRYDNALALIQQQSESHQKVLDFISHNFRDHH LAGLLIGKYYRAKELGLELIFDPSSFVEHLPSSLSHNEWISIVGNLLDNAYNATLLNR EGSRQIECLINSEGNEVIIEVADQGCGIDENIRQHIFERGVTTHNNGDHGIGLWLVHS YVKQANGDIIVDNNNPFGTIFTLYIPFTREE" gene complement(63548..64855) /locus_tag="STM0054" /db_xref="GeneID:1251572" CDS complement(63548..64849) /locus_tag="STM0054" /EC_number="4.1.1.3" /note="oxaloacetate decarboxylase beta chain. (SW:DCOB_SALTY)" /codon_start=1 /transl_table=11 /product="oxaloacetate decarboxylase subunit beta" /protein_id="NP_459059.1" /db_xref="GI:16763444" /db_xref="GeneID:1251572" /translation="MESLNALLQGMGLMHLGAGQAIMLLVSLLLLWLAIAKKFEPLLL LPIGFGGLLSNIPEAGMALTALESLLAHHDAGQLAVIAAKLNCAPDVHAIKEALALAL PSVQGQMENLAVDMGYTPGVLALFYKVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTL LLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLAPEL LGAIAVAAYSYMALVPLIQPPIMKALTSETERKIRMVQLRTVSKREKILFPVVLLMLV ALLLPDAAPLLGMFCFGNLMRESGVVERLSDTVQNGLINIVTIFLGLSVGAKLVADKF LQPQTLGILLLGVIAFGIGTAAGVLMAKLLNLCSKNKINPLIGSAGVSAVPMAARVSN KVGLESDPQNFLLMHAMGPNVAGVIGSAIAAGVMLKYVLAM" regulatory complement(64850..64855) /regulatory_class="ribosome_binding_site" /locus_tag="STM0054" /note="putative RBS for STM0054; RegulonDB:STMS1H000442" gene complement(64862..66644) /locus_tag="STM0055" /db_xref="GeneID:1251573" CDS complement(64862..66637) /locus_tag="STM0055" /EC_number="4.1.1.3" /note="oxaloacetate decarboxylase alpha chain. (SW:DCOA_SALTY)" /codon_start=1 /transl_table=11 /product="oxaloacetate decarboxylase subunit alpha" /protein_id="NP_459060.1" /db_xref="GI:16763445" /db_xref="GeneID:1251573" /translation="MTIAITDVVLRDAHQSLFATRLRLDDMLPIAAALDDVGYGSLEC WGGATFDACIRFLGEDPWLRLRELKKAMPKTPLQMLLRGQNLLGYRHYADDVVERFVE RAVKNGMDVFRVFDAMNDPRNMKAALQAVRSHGAHAQGTLSYTTSPAHTLQTWLDLTE QLLETGVDSIAIKDMSGILTPMAAYELVSEIKKRFEVRLHLHCHATTGMAEMALLKAI EAGVDGVDTAISSMSATYGHPATEALVATLAGTEHDTGLDILKLENIAAYFREVRKKY HAFEGQLKGYDSRILVAQVPGGMLTNLESQLKQQNAADKLDQVLAEIPRVREDLGFIP LVTPTSQIVGTQAVLNVLTGERYKTIAKETAGILKGEYGHTPVPVNAALQARVLEGGA PVTCRPADLLKPELAELEADVRRQAQEKGITLAGNAIDDVLTVALFPQIGLKFLENRN NPAAFEPLPQAEAAQPVAKAEKPAASGIYTVEVEGKAFVVKVSDGGDISQLTAAVPAA SSAPVQAAAPAGAGTPVTAPLAGNIWKVIATEGQTVAEGDVLLILEAMKMETEIRAAQ AGTVRGIAVKSGDAVSVGDTLMTLA" regulatory complement(66639..66644) /regulatory_class="ribosome_binding_site" /locus_tag="STM0055" /note="putative RBS for STM0055; RegulonDB:STMS1H000443" gene complement(66654..66899) /locus_tag="STM0056" /db_xref="GeneID:1251574" CDS complement(66654..66893) /locus_tag="STM0056" /note="sodium ion pump oxaloacetate decarboxylase subunit gamma (gi|321934)" /codon_start=1 /transl_table=11 /product="oxaloacetate decarboxylase subunit gamma" /protein_id="NP_459061.1" /db_xref="GI:16763446" /db_xref="GeneID:1251574" /translation="MNEAVLLGEGFTLMFLGMGFVLSFLFLLIFAIRGMSAVITRFFP EPVAAPAPRAVPVVDDFTRLKPVIAAAIHHHRHHV" regulatory complement(66894..66899) /regulatory_class="ribosome_binding_site" /locus_tag="STM0056" /note="putative RBS for STM0056; RegulonDB:STMS1H000444" gene complement(67052..68400) /locus_tag="STM0057" /db_xref="GeneID:1251575" CDS complement(67052..68392) /locus_tag="STM0057" /codon_start=1 /transl_table=11 /product="citrate:sodium symporter" /protein_id="NP_459062.1" /db_xref="GI:16763447" /db_xref="GeneID:1251575" /translation="MTNMTQASATEKKGASDLLRFKIFGMPLPLYAFALITLLLSHFY NAIPTDLVGGFALMFVMGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQK EIDAISNVMDKSNFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGASLFGI VIGLCFGIPVDRIMMLYVLPIMGGGNGAGAVPLSEIYHSVTGRSREEYYSTAIAILTI ANIFAIIFAALLDMIGKKYTWLSGEGELVRKASFKTEDDEKAGQITHRETAVGMVLST TCFLLAYVVAKKILPSIGGVSIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSDFFSK QLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYPIESS ITAGLCMANRGGSGDLEVLSACNRMNLISYAQISSRLGGGIVLVIASIVFSMMV" regulatory complement(68395..68400) /regulatory_class="ribosome_binding_site" /locus_tag="STM0057" /note="putative RBS for STM0057; RegulonDB:STMS1H000445" gene 68637..69680 /gene="citC2" /locus_tag="STM0058" /db_xref="GeneID:1251576" CDS 68637..69680 /gene="citC2" /locus_tag="STM0058" /EC_number="6.2.1.22" /note="citrate (pro-3S)-lyase ligase; similar to E. coli citrate lyase synthetase (citrate (pro-3S)-lyase ligase (AAC73719.1); Blastp hit to AAC73719.1 (381 aa), 49% identity in aa 33 - 363" /codon_start=1 /transl_table=11 /product="putative citrate lyase synthetase" /protein_id="NP_459063.1" /db_xref="GI:16763448" /db_xref="GeneID:1251576" /translation="MQNRVNLIFKRIYLQKDVLRRESVAMFLEGVGLALEDDCEIAVC AYWQGEIVGCGSLAGSVLKCIAVSPVLQGEGLSLKLLTELLTLAYELNRSELFLFTKP QNRLLFSGAGFWPIAQAGELAVLMENSSERLARFCRQLALYRQPGKTIGAIVMNANPF TLGHRYLVEQAAAACDWLHLFVVKEDASFFSYTDRWALIEQGIAGIDNVTLHSGSAYM ISRATFPGYFLKEKGVVDDCHCQIDLQLFREHLAPALGITHRFVGSEPFCPLTCAYNQ RMHDILHDPKRSGPVIEVVELARVEKNGAAISASRVRKLYSERNWSAISALVPAGTLA YLQRHAARHTETI" gene 69703..70003 /gene="citD2" /locus_tag="STM0059" /db_xref="GeneID:1251577" regulatory 69703..69708 /regulatory_class="ribosome_binding_site" /gene="citD2" /locus_tag="STM0059" /note="putative RBS for citD2; RegulonDB:STMS1H000446" CDS 69710..70003 /gene="citD2" /locus_tag="STM0059" /note="similar to E. coli citrate lyase acyl carrier protein (gamma chain) (AAC73718.1); Blastp hit to AAC73718.1 (98 aa), 48% identity in aa 1 - 94" /codon_start=1 /transl_table=11 /product="citrate lyase acyl carrier protein" /protein_id="NP_459064.1" /db_xref="GI:16763449" /db_xref="GeneID:1251577" /translation="MKIIKDALAGTLESSDVMIRIGPSSEPGIRLELESLVKQQFGAA IEQVVRETLAKLGVERALVSVDDKGALECILRARVQAAALRAAEQTEIQWSAL" gene 69994..70869 /gene="citE2" /locus_tag="STM0060" /db_xref="GeneID:1251578" regulatory 69994..69999 /regulatory_class="ribosome_binding_site" /gene="citD2" /locus_tag="STM0059" /note="putative RBS for citE2; RegulonDB:STMS1H000447" CDS 70000..70869 /gene="citE2" /locus_tag="STM0060" /EC_number="4.1.3.6" /note="similar to E. coli citrate lyase beta chain (acyl lyase subunit) (AAC73717.1); Blastp hit to AAC73717.1 (307 aa), 63% identity in aa 17 - 306" /codon_start=1 /transl_table=11 /product="citrate (pro-3S)-lyase subunit beta" /protein_id="NP_459065.1" /db_xref="GI:16763450" /db_xref="GeneID:1251578" /translation="MRPRRSMLFIPGANAAMLSTSFVYGADAVMFDLEDAVALREKDT ARLLVHHALQHPFYQDVEKVVRINPLNTPFGLADLEAVVRGGADIVRLPKTDSKNDVL ELEAQVERIERECGREVGSTRLMAAIESAKGVVNAVDIATSSPRMVAIALAAFDYVMD MGTSRGDGTELFYARCAVLHAARVAGIAAYDVVWSDINNEEGFLKEVQLAKGLGFNGK SLVNPRQIELLHQAYSPTRKEVEHAYEVIAAAEEAESRGLGVVSLNGKMIDGPIIDHA RKVVALSASGIRD" gene 70873..72400 /gene="citF2" /locus_tag="STM0061" /db_xref="GeneID:1251579" regulatory 70873..70878 /regulatory_class="ribosome_binding_site" /gene="citF2" /locus_tag="STM0061" /note="putative RBS for citF2; RegulonDB:STMS1H000449" CDS 70880..72400 /gene="citF2" /locus_tag="STM0061" /note="bifunctional; similar to E. coli citrate lyase alpha chain (AAC73716.1); Blastp hit to AAC73716.1 (510 aa), 72% identity in aa 30 - 509" /codon_start=1 /transl_table=11 /product="citrate lyase subunit alpha" /protein_id="NP_459066.1" /db_xref="GI:16763451" /db_xref="GeneID:1251579" /translation="MKETVTMLNQQYVVPEGLQPYQGVTANSPWLASETEKRRRKICD SLEEAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWP LIEHIKNGVVRQIYTSGLRGKLGEEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAF LGVPCCDEFGNANGFSGKSRCGSLGYAQVDAQYAKCVVLLTEEWVEFPNYPASIAQDQ VDLIVQVDEVGDPEKITAGAIRLSSNPRELLIARQAANVIEHSGYFCDGFSLQTGTGG ASLAVTRFLEDKMRRHNITASFGLGGITGTMVDLHEKGLIKALLDTQSFDGDAARSLA QNPHHIEISTNQYANPASKGAACERLNVVMLSALEIDVNFNVNVMTGSNGVLRGASGG HSDTAAGADLTIITAPLVRGRIPCVVEKVLTTVTPGASVDVLVTDHGIAVNPARQDLL DNLRAAGVALMTIEQLQQRAEQLTGKPQPIEFTDRVVAVVRYRDGSVIDVIRQVKG" gene 72394..72951 /gene="citX2" /locus_tag="STM0062" /db_xref="GeneID:1251580" regulatory 72394..72399 /regulatory_class="ribosome_binding_site" /gene="citX2" /locus_tag="STM0062" /note="putative RBS for citX2; RegulonDB:STMS1H000450" CDS 72400..72951 /gene="citX2" /locus_tag="STM0062" /note="similar to E. coli orf, hypothetical protein (AAC73715.1); Blastp hit to AAC73715.1 (183 aa), 46% identity in aa 12 - 167" /codon_start=1 /transl_table=11 /product="holo-ACP synthase CitX" /protein_id="NP_459067.1" /db_xref="GI:16763452" /db_xref="GeneID:1251580" /translation="MKGTDLLYLGQAVTLEEMLQARDKRAARQRQALNCYRLPLISLT LVAPGAVKNSAVWRRVADYAIAEILALCEQMEWVNVWEMQVNERSGPEWMAAVCAPAM ALKQHMSTLEMSHPLGRLWDIDIIDSDGKSLSRRELGHPARPCLICQQDAHLCARGKH HTLDLLLDEIARRIECYERERCD" gene 72923..73837 /gene="citG2" /locus_tag="STM0063" /db_xref="GeneID:1251581" regulatory 72923..72928 /regulatory_class="ribosome_binding_site" /gene="citX2" /locus_tag="STM0062" /note="putative RBS for citG2; RegulonDB:STMS1H000451" CDS 72929..73837 /gene="citG2" /locus_tag="STM0063" /note="similar to E. coli orf, hypothetical protein (AAC73714.1); Blastp hit to AAC73714.1 (292 aa), 47% identity in aa 1 - 290" /codon_start=1 /transl_table=11 /product="triphosphoribosyl-dephospho-CoA synthase CitG" /protein_id="NP_459068.1" /db_xref="GI:16763453" /db_xref="GeneID:1251581" /translation="MNVSVVTERRTPAYSSLAAGELNGLVARALLTEARLTPKPGLVD IRNSGAHRDMDLAAFERSTTAIAPWMEKFFIMGNNTAALAAENVLVMLRPLGMACEND MLQATNGVNTHRGAIFAFGLLSAAIGRLLARGEPLEQNRICDQVARLSRNIVAHELSA KKAGKLTKSETHFQCYGLSGARGEAESGFRTVRTQALPVFNRVVQEHDDTHLALLQTL LHLMAWNDDTNLVSRGGLEGLYYVQQQAQKLLWQGGVLVEGGIEAMQSLDDELILRNL SPGGSADLLAVTWFLSHFPAGSLYPE" gene 74007..74838 /gene="dapB" /locus_tag="STM0064" /db_xref="GeneID:1251582" regulatory 74007..74012 /regulatory_class="ribosome_binding_site" /gene="dapB" /locus_tag="STM0064" /note="putative RBS for dapB; RegulonDB:STMS1H000452" CDS 74017..74838 /gene="dapB" /locus_tag="STM0064" /EC_number="1.17.1.8" /note="similar to E. coli dihydrodipicolinate reductase (AAC73142.1); Blastp hit to AAC73142.1 (273 aa), 90% identity in aa 1 - 273" /codon_start=1 /transl_table=11 /product="4-hydroxy-tetrahydrodipicolinate reductase" /protein_id="NP_459069.1" /db_xref="GI:16763454" /db_xref="GeneID:1251582" /translation="MHEAQIRVAIAGAGGRMGRQLIQAAMAMEGVQLGAALEREGSSL LGSDAGELAGAGKSGVIVQSSLEAVKDDFDVFIDFTRPEGTLTHLAFCRQHGKGMVIG TTGFDDAGKQAIREASQEIAIVFAANFSVGVNVMLKLLEKAAKVMGDYSDIEIIEAHH RHKVDAPSGTALAMGEAIAGALDKNLKDCAVYSREGYTGERVAGTIGFATVRAGDIVG EHTAMFADIGERVEITHKASSRMTFANGALRSALWLKTKKNGLFDMRDVLGLDVL" gene 75088..75435 /locus_tag="STM0065" /db_xref="GeneID:1251583" CDS 75088..75435 /locus_tag="STM0065" /codon_start=1 /transl_table=11 /product="putative viral protein" /protein_id="NP_446529.1" /db_xref="GI:1109557565" /db_xref="GeneID:1251583" /translation="MRLIGPSDASVRVITFNGKKLLPELTLVIFSRSALPYAKGTSTR LIRLISIGGGVLFLGGAFYLFCFNRLAFLCCSEAGCGPIVCACLKEKEAGSLYRDCNS YYIVLICCFLLIL" protein_bind 75470..75484 /note="putative binding site for IHF, RegulonDB: STMS1H000223" /bound_moiety="IHF" gene 75812..77028 /gene="carA" /locus_tag="STM0066" /db_xref="GeneID:1251584" regulatory 75812..75820 /regulatory_class="minus_35_signal" /gene="carA" /locus_tag="STM0066" /note="putative -35_signal for carA; RegulonDB:STMLTH004690" protein_bind 75820..75832 /gene="carA" /locus_tag="STM0066" /note="putative binding site for ArgR, RegulonDB: STMS1H000031" /bound_moiety="ArgR" regulatory 75836..75844 /regulatory_class="minus_10_signal" /gene="carA" /locus_tag="STM0066" /note="putative -10_signal for carA; RegulonDB:STMLTH004690" protein_bind 75852..75870 /gene="carA" /locus_tag="STM0066" /note="putative binding site for ArgR, RegulonDB: STMS1H000028" /bound_moiety="ArgR" regulatory 75868..75873 /regulatory_class="ribosome_binding_site" /gene="carA" /locus_tag="STM0066" /note="putative RBS for carA; RegulonDB:STMS1H000453" CDS 75880..77028 /gene="carA" /locus_tag="STM0066" /EC_number="6.3.5.5" /note="carbamoyl-phosphate synthase small chain. (SW:CARA_SALTY)" /codon_start=1 /transl_table=11 /product="carbamoyl phosphate synthase small subunit" /protein_id="NP_459071.1" /db_xref="GI:16763456" /db_xref="GeneID:1251584" /translation="MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILT DPSYSRQIVTLTYPHIGNVGTNKADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYL KRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDSPDAKLALEKAKAFPGLNGMDLAK EVTTAETYRWTQGSWTLKDGLPEAKSEDDLPFHVVAYDFGAKRNILRMLVDRGCRLTV VPAQTSAEEVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPLFGICLGHQLLA LASGAKTVKMKFGHHGGNHPVKDMDRNVVMITAQNHGFAVDEDSLPANLRVTHKSLFD GTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRQSAK" gene 77030..80274 /gene="carB" /locus_tag="STM0067" /db_xref="GeneID:1251585" regulatory 77030..77035 /regulatory_class="ribosome_binding_site" /gene="carB" /locus_tag="STM0067" /note="putative RBS for carB; RegulonDB:STMS1H000454" CDS 77047..80274 /gene="carB" /locus_tag="STM0067" /EC_number="6.3.5.5" /note="carbamoyl-phosphate synthase large chain. (SW:CARB_SALTY)" /codon_start=1 /transl_table=11 /product="carbamoyl phosphate synthase large subunit" /protein_id="NP_459072.1" /db_xref="GI:16763457" /db_xref="GeneID:1251585" /translation="MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRV ILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL ERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGIAHTMEEALAVAA DVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDESLIGWKEYEM EVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIG VETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDE LMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQ ESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVD GVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAKLAGV REAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEDECEANPSIDRDKIMVLG GGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLE DVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAV DRLKLKQPANATVTAIEQAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQT AVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPA YTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKDNEVYLIEVNPRAARTVPFVSKA TGVPLAKVAARVMAGKSLTEQGVTQEIIPPYYSVKEVVLPFNKFPGVDPLLGPEMRST GEVMGVGRTFAEAFAKAQLGSNSTMKKQGRALLSVREGDKERVVDLAAKLLKQGFELD ATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTAGRRAIEDSRVIR RSALQYKVHYDTTLNGGFATTMALNADATEKVTSVQEMHAQIKKS" protein_bind 80396..80420 /note="putative binding site for FNR, RegulonDB: STMS1H000154" /bound_moiety="FNR" protein_bind 80416..80436 /note="putative binding site for CRP, RegulonDB: STMS1H000050" /bound_moiety="CRP" gene 80459..80943 /gene="caiF" /locus_tag="STM0068" /db_xref="GeneID:1251586" regulatory 80459..80467 /regulatory_class="minus_35_signal" /gene="caiF" /locus_tag="STM0068" /note="putative -35_signal for caiF; RegulonDB:STMLTH004691" regulatory 80486..80494 /regulatory_class="minus_10_signal" /gene="caiF" /locus_tag="STM0068" /note="putative -10_signal for caiF; RegulonDB:STMLTH004691" regulatory 80537..80542 /regulatory_class="ribosome_binding_site" /gene="caiF" /locus_tag="STM0068" /note="putative RBS for caiF; RegulonDB:STMS1H000455" CDS 80548..80943 /gene="caiF" /locus_tag="STM0068" /note="similar to E. coli transcriptional regulator of cai operon (AAC73145.1); Blastp hit to AAC73145.1 (166 aa), 76% identity in aa 36 - 166" /codon_start=1 /transl_table=11 /product="CaiF/GrlA family transcriptional regulator" /protein_id="NP_459073.1" /db_xref="GI:16763458" /db_xref="GeneID:1251586" /translation="MCEKYVERPLYLLIADWMMAENRWITAREISRQFDIEHCKAINT LSYILSEVGEIVCEVKMIPNQIAGRGCQCQRLVKVVSIDSQLYRRLNHNLQERKVSVA KAPRLSAVPPTELNREQKWQMMLSKSMRR" gene complement(81020..81627) /gene="caiE" /locus_tag="STM0069" /db_xref="GeneID:1251587" CDS complement(81020..81616) /gene="caiE" /locus_tag="STM0069" /note="similar to E. coli possible synthesis of cofactor for carnitine racemase and dehydratase (AAC73146.1); Blastp hit to AAC73146.1 (203 aa), 84% identity in aa 8 - 202" /codon_start=1 /transl_table=11 /product="phenylacetic acid degradation protein PaaY" /protein_id="NP_459074.1" /db_xref="GI:16763459" /db_xref="GeneID:1251587" /translation="MSYYAFEGLIPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLR GDYGRLILEAGSNLQDGCIMHGYCDTDTIVHENGHIGHGAILHGCVVGRDALVGMNSV IMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELHWKHLNTKEYQ DLAIRCRTGLSETKPLTQAEENRPRLKGTTDVKPKSAQ" regulatory complement(81622..81627) /regulatory_class="ribosome_binding_site" /gene="caiE" /locus_tag="STM0069" /note="putative RBS for caiE; RegulonDB:STMS1H000456" gene complement(81725..82523) /gene="caiD" /locus_tag="STM0070" /db_xref="GeneID:1251588" CDS complement(81725..82510) /gene="caiD" /locus_tag="STM0070" /EC_number="5.-.-.-" /note="similar to E. coli carnitine racemase (AAC73147.1); Blastp hit to AAC73147.1 (297 aa), 93% identity in aa 37 - 297" /codon_start=1 /transl_table=11 /product="carnitinyl-CoA dehydratase" /protein_id="NP_459075.1" /db_xref="GI:16763460" /db_xref="GeneID:1251588" /translation="MSESLHLTRNGPILEITLDRPKANAIDAKTSFAMGEAFLNFRDD PELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVN GYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVM TGRRMSAEEALRWGVVNRVVSQSELMESARELAQQLVNSAPLAIAALKEIYRATSEMP VEEGYRYIRSGVLKHYPSVLHSEDALEGPQAFAEKRDPVWKGR" regulatory complement(82518..82523) /regulatory_class="ribosome_binding_site" /gene="caiD" /locus_tag="STM0070" /note="putative RBS for caiD; RegulonDB:STMS1H000457" gene complement(82564..84131) /gene="caiC" /locus_tag="STM0071" /db_xref="GeneID:1251589" CDS complement(82564..84117) /gene="caiC" /locus_tag="STM0071" /EC_number="6.3.2.-" /note="similar to E. coli probable crotonobetaine/carnitine-CoA ligase (AAC73148.1); Blastp hit to AAC73148.1 (522 aa), 84% identity in aa 6 - 522" /codon_start=1 /transl_table=11 /product="crotonobetaine/carnitine-CoA ligase" /protein_id="NP_459076.1" /db_xref="GI:16763461" /db_xref="GeneID:1251589" /translation="MDIVGGQNLRQMWDDLAGVYGDKTALIFESCEGIVRQFSYASLN EEINRTANLFYSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLGEESA WILQNSQVSLLVTSAQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFTQLQARQ SATLCYTPVLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQIALRDDDVYM TVMPAFHIDCQCTAAMPAFSAGSTFVLLEKYSARAFWDQVRKYQATVTECIPMMIRTL MVQPAAPTDRQHHLREVMFYLNLSEQEKDDFTERFGVRLLTSYGMTETIVGIIGDRPG DKRRWPSIGRVGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATAK ALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIV VVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCS GKIIKKNLK" regulatory complement(84126..84131) /regulatory_class="ribosome_binding_site" /gene="caiC" /locus_tag="STM0071" /note="putative RBS for caiC; RegulonDB:STMS1H000458" gene complement(84180..85410) /gene="caiB" /locus_tag="STM0072" /db_xref="GeneID:1251590" CDS complement(84180..85397) /gene="caiB" /locus_tag="STM0072" /note="similar to E. coli l-carnitine dehydratase (AAC73149.1); Blastp hit to AAC73149.1 (405 aa), 95% identity in aa 1 - 405" /codon_start=1 /transl_table=11 /product="L-carnitine CoA-transferase" /protein_id="NP_459077.1" /db_xref="GI:16763462" /db_xref="GeneID:1251590" /translation="MNHLPMPTFGPLAGVRVVFSGIEIAGPFAGQMFAEWGAEVIWIE NVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFA RRGITDEVLWEHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQP MPAFPYTADYFSGMTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNG GEICPRMTKGKDPYYAGCGLYKCADGYIVMELVGITQINECFKDIGLAHILGTPEVPE GTQLIHRVECPYGPLVEEKLDAWLATHTIADVQARFAELNIACAKVLTIPELEGNPQY VARESITQWQTMDGRTCKGPNIMPKFKNNPGKIWRGMPSHGMDTAAILKNIGYSEADI KELVGKGLAKVED" regulatory complement(85405..85410) /regulatory_class="ribosome_binding_site" /gene="caiB" /locus_tag="STM0072" /note="putative RBS for caiB; RegulonDB:STMS1H000459" gene complement(85509..86662) /gene="caiA" /locus_tag="STM0073" /db_xref="GeneID:1251591" CDS complement(85509..86651) /gene="caiA" /locus_tag="STM0073" /EC_number="1.3.99.-" /note="similar to E. coli probable carnitine operon oxidoreductase (AAC73150.1); Blastp hit to AAC73150.1 (380 aa), 97% identity in aa 1 - 380" /codon_start=1 /transl_table=11 /product="crotonobetainyl-CoA--carnitine CoA-transferase" /protein_id="NP_459078.1" /db_xref="GI:16763463" /db_xref="GeneID:1251591" /translation="MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVK ALADMGIDSLLIPEEHGGLEAGFVTVAAVWMELGRLGAPTYVLYQLPGGFNTFLREGT QEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRKNGKVYLNGSKCFITSSA YTPYIVVMARDGASPDKPVYTEWFVDMSKAGIKVNKLEKLGLRMDSCCEITFDDVELD EKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRF QLIQEKFAHMAIKLNSMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFEVVDTAMQ VLGGVGIAGNHRITRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR" regulatory complement(86657..86662) /regulatory_class="ribosome_binding_site" /gene="caiA" /locus_tag="STM0073" /note="putative RBS for caiA; RegulonDB:STMS1H000460" gene complement(86686..88216) /gene="caiT" /locus_tag="STM0074" /db_xref="GeneID:1251592" CDS complement(86686..88203) /gene="caiT" /locus_tag="STM0074" /note="similar to E. coli probable carnitine transporter (AAC73151.1); Blastp hit to AAC73151.1 (504 aa), 96% identity in aa 1 - 504" /codon_start=1 /transl_table=11 /product="L-carnitine:gamma-butyrobetaine antiporter" /protein_id="NP_459079.1" /db_xref="GI:16763464" /db_xref="GeneID:1251592" /translation="MKNEKKKSGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVF SYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGDEKPEFSTASWIFMMFASCTSA AVLFWGSIEIYYYISTPPFGLEPNSTGAKEIGLAYSLFHWGPLPWATYSFLSVAFAYF FFVRKMDVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTEC MQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIV SGASFIMNYFTDSVGMLLMHLPRMLFYTDAIGKGGFPQGWTVFYWAWWVIYAIQMSIF LARISRGRTVRELCFGMVMGLTASTWILWTVLGSNTLLLMDKNILNIPQLIEQHGVAR AIIETWAALPLSTATMWGFFILCFIATVTLINACSYTLAMSTCREVRDGEEPPLLVRI GWSVLVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKVHWKDK" regulatory complement(88211..88216) /regulatory_class="ribosome_binding_site" /gene="caiT" /locus_tag="STM0074" /note="putative RBS for caiT; RegulonDB:STMS1H000461" protein_bind complement(88340..88366) /note="putative binding site for CRP, RegulonDB: STMS1H000069" /bound_moiety="CRP" protein_bind 88461..88489 /note="putative binding site for CRP, RegulonDB: STMS1H000092" /bound_moiety="CRP" protein_bind 88532..88552 /note="putative binding site for CRP, RegulonDB: STMS1H000084" /bound_moiety="CRP" gene 88547..89454 /gene="fixA" /locus_tag="STM0075" /db_xref="GeneID:1251593" regulatory 88547..88555 /regulatory_class="minus_35_signal" /gene="fixA" /locus_tag="STM0075" /note="putative -35_signal for fixA; RegulonDB:STMLTH004700" regulatory 88574..88582 /regulatory_class="minus_10_signal" /gene="fixA" /locus_tag="STM0075" /note="putative -10_signal for fixA; RegulonDB:STMLTH004700" regulatory 88673..88678 /regulatory_class="ribosome_binding_site" /gene="fixA" /locus_tag="STM0075" /note="putative RBS for fixA; RegulonDB:STMS1H000462" CDS 88684..89454 /gene="fixA" /locus_tag="STM0075" /note="similar to E. coli probable flavoprotein subunit, carnitine metabolism (AAC73152.1); Blastp hit to AAC73152.1 (268 aa), 87% identity in aa 13 - 268" /codon_start=1 /transl_table=11 /product="electron transfer flavoprotein" /protein_id="NP_459080.1" /db_xref="GI:16763465" /db_xref="GeneID:1251593" /translation="MKIITCYKCVPDEQDIAINNADGTLDFSKADSKISQYDLNAIEA ACQLKQQLGDAQVVAMSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQHTAT ALAAAAQKSGFDLLICGDGSSDLYAQQVGLLVGEALNIPAINGVSKILSLTDSTLTVE RELEDEVETLSIPLPAVIAVSTDINTPQIPSMKAILGAAKKPVQVWSPADIGLNSVPA YSAQQVAAPKQRERQRVVIEGDGEEQIAAFVENLRKII" gene 89459..90411 /gene="fixB" /locus_tag="STM0076" /db_xref="GeneID:1251594" regulatory 89459..89464 /regulatory_class="ribosome_binding_site" /gene="fixB" /locus_tag="STM0076" /note="putative RBS for fixB; RegulonDB:STMS1H000463" CDS 89470..90411 /gene="fixB" /locus_tag="STM0076" /note="similar to E. coli probable flavoprotein subunit, carnitine metabolism (AAC73153.1); Blastp hit to AAC73153.1 (313 aa), 84% identity in aa 1 - 313" /codon_start=1 /transl_table=11 /product="nitrogen fixation protein FixB" /protein_id="NP_459081.1" /db_xref="GI:16763466" /db_xref="GeneID:1251594" /translation="MNKFSSVWVFSDTPSRLPELMSGAQAVGEKVNAFVLNEADSATA CHLGADHVWLLSGKPEDRMIEDYAAAMAETIRQHSEGGAVLLPNTRRGKLLAAKLGYR LSAAVSNDASDVSLQDGKAAVKHMVYGGLAIGAETIASPFAVITLSSGTFDAQQPDAS RSGEMHTVQWQAPATAVTRTATQARQSNSVDLDKARLVVSVGRGIGSKENISLAEALC QTIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANGAQT IFAINKDKNAPIFQYADFGIVGDALKILPALTAALAR" gene 90450..91747 /gene="fixC" /locus_tag="STM0077" /db_xref="GeneID:1251595" regulatory 90450..90455 /regulatory_class="ribosome_binding_site" /gene="fixC" /locus_tag="STM0077" /note="putative RBS for fixC; RegulonDB:STMS1H000464" CDS 90461..91747 /gene="fixC" /locus_tag="STM0077" /note="similar to E. coli flavoprotein; electron transport (AAC73154.1); Blastp hit to AAC73154.1 (428 aa), 88% identity in aa 1 - 428" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_459082.1" /db_xref="GI:16763467" /db_xref="GeneID:1251595" /translation="MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKN VTGGRLYAHSLERIIPGFADQAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVS YSVLRSKFDAWLMEQAEEAGAQLITGIRVDNVVQRDGKVVGVEADGDILEAKVVILAD GVNSLLAEKLGMTKRVEASHVAVGVKELIELPKLVIEDRFQLQGNEGAACLFAGAPTD GLMGGGFLYTNETTLSLGLVCGLHHLKDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEY AAHVVPEAGMNMQPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAISAGEAAAKTVLSA MKRDDFSKQSLGEYRQHLDEGPMRDMRMYQKLPAFLDNPRMFTAYPEMAVNIARDLFT VDGSAPVPMRKKILRHAKKVGFINLMKDGLKGVTVL" gene 91728..92031 /gene="fixX" /locus_tag="STM0078" /db_xref="GeneID:1251596" regulatory 91728..91733 /regulatory_class="ribosome_binding_site" /gene="fixX" /locus_tag="STM0078" /note="putative RBS for fixX; RegulonDB:STMS1H000465" CDS 91744..92031 /gene="fixX" /locus_tag="STM0078" /note="carnitine metabolism; similar to E. coli putative ferredoxin (AAC73155.1); Blastp hit to AAC73155.1 (95 aa), 88% identity in aa 1 - 95" /codon_start=1 /transl_table=11 /product="ferredoxin family protein" /protein_id="NP_459083.1" /db_xref="GI:16763468" /db_xref="GeneID:1251596" /translation="MTSPVNVDVKLGVNKFNVDEDSPHIILKTDPDKQALEVLIKACP AGLYKKQDDGSVRFDYAGCLECGTCRILGLDTALEKWEYPRGTFGVEFRYG" gene 92166..93518 /gene="yaaU" /locus_tag="STM0079" /db_xref="GeneID:1251597" regulatory 92166..92171 /regulatory_class="ribosome_binding_site" /gene="yaaU" /locus_tag="STM0079" /note="putative RBS for yaaU; RegulonDB:STMS1H000466" CDS 92178..93518 /gene="yaaU" /locus_tag="STM0079" /note="similar to E. coli putative transport protein (AAC73156.1); Blastp hit to AAC73156.1 (443 aa), 86% identity in aa 1 - 439" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_459084.1" /db_xref="GI:16763469" /db_xref="GeneID:1251597" /translation="MQQPRNFDDLKFSSIHRRIMLWGSGGPFLDGYVLVIIGVALEQL TPLLHLDAEWIGALGAATLAGLFIGTSLFGYICDKVGRRKMFLLDIIAIGVISVATMF VSTPLELLVMRVLIGIVIGADYPIATSMITEFSNTRQRAFSIGFIAAMWYVGATCANL VGYWLYDMEGGWRWMLGSAFIPCLIILIGRFDLPESPRWLLRKGRVKECEQMMIKLFG EPVCFDDELPQETRFLQLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGWE QGRNAALGNVVISLFFMLGCIPAMFWLNSIGRRPLLIGSFAMMTIALALLGLVSNLGI ILVVVAFAVYAFFSGGPGILQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPI FITRYGINNVMLIGALISLVGLGVSVMFAPETRGLTLTQTGNMTLRGTPSDNPR" gene 93601..93837 /locus_tag="STM0080" /db_xref="GeneID:1251598" regulatory 93601..93606 /regulatory_class="ribosome_binding_site" /locus_tag="STM0080" /note="putative RBS for STM0080; RegulonDB:STMS1H000467" CDS 93607..93837 /locus_tag="STM0080" /note="similar to E. coli orf, hypothetical protein (AAC75851.1); Blastp hit to AAC75851.1 (76 aa), 51% identity in aa 1 - 75" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459085.1" /db_xref="GI:16763470" /db_xref="GeneID:1251598" /translation="MQKRLMTALFTAATLFTVAGCSSNQAVETTDGKTIVTDGKPEVD NDTGMVSYKNAATGKTEQINRDQLKNMSELDN" gene 94123..94547 /locus_tag="STM0081" /db_xref="GeneID:1251599" regulatory 94123..94128 /regulatory_class="ribosome_binding_site" /locus_tag="STM0081" /note="putative RBS for STM0081; RegulonDB:STMS1H000468" CDS 94131..94547 /locus_tag="STM0081" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459086.1" /db_xref="GI:16763471" /db_xref="GeneID:1251599" /translation="MKPIPFYLLALFSAASGATEINVCKDLIGTWKTTADNPPYTMTI SPPVESCGEKCVKLNVQYELDVTHRNALYCHEGQEGVKGQGPMVIAFEGAYGGHAIGT YNRQLQLLWAGVISKNKKGKWITKMENYWFRQVKAH" gene complement(94771..95069) /locus_tag="STM0082" /db_xref="GeneID:1251600" CDS complement(94771..95061) /locus_tag="STM0082" /note="similar to E. coli orf, hypothetical protein (AAC76270.1); Blastp hit to AAC76270.1 (104 aa), 36% identity in aa 18 - 103" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459087.1" /db_xref="GI:16763472" /db_xref="GeneID:1251600" /translation="MKKRIIAAALLATVASFSTLAAEQVSKQEISHFKLVKVGTINVS QSGGQISSPSDLREKLSELADAKGGKYYHIIAAREHGPNFEAVAEVYNDATK" regulatory complement(95064..95069) /regulatory_class="ribosome_binding_site" /locus_tag="STM0082" /note="putative RBS for STM0082; RegulonDB:STMS1H000469" gene 95271..95465 /locus_tag="STM0083" /db_xref="GeneID:1251601" CDS 95271..95465 /locus_tag="STM0083" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_446547.1" /db_xref="GI:1109557566" /db_xref="GeneID:1251601" /translation="MLPGTHSLAAFKQLELFWVITSVDYLKIALFGVTVFYLVIVTSL CCCQCKIMHCQLKRNLTPCK" gene 95952..97848 /locus_tag="STM0084" /db_xref="GeneID:1251602" regulatory 95952..95957 /regulatory_class="ribosome_binding_site" /locus_tag="STM0084" /note="putative RBS for STM0084; RegulonDB:STMS1H000470" CDS 95959..97848 /locus_tag="STM0084" /note="similar to E. coli putative sulfatase (AAC76701.1); Blastp hit to AAC76701.1 (497 aa), 31% identity in aa 251 - 345, 31% identity in aa 5 - 103, 45% identity in aa 400 - 431" /codon_start=1 /transl_table=11 /product="phosphatase" /protein_id="NP_459089.1" /db_xref="GI:16763474" /db_xref="GeneID:1251602" /translation="MSNKKNLSAEETDLTRRKLLTSAGILAAGGMLSGAVKADEKCAV KAKPAWDKPFTGEIPEKLPEGYNILLVVTDQERFFPTFPFPVPGRERLMKTGVTFCNH QNTSNVCTPSRSVLYTGLHMPQTKMFDNLGLPWMPYDLDPALGTTGHMMRELGYYTAY KGKWHLTEKLEKPLPDEKDEDIDVGDIPEPELHKIMEKYGFADYHGIGDIIGHSKGGY FYDSTTTAQTINWLRCKGQPLNDQHKPWFLAVNLVNPHDVMFIDTDKEGEKVQWRGEL DQDDNTLAPTQPPENELYQASWPNYPLPANRHQSFNEQGRPPAHLEYQTARAALEGQF PDEDRRWRKLLDYYFNCIRDCDTHLDRILNELDALKLTDKTIVVFTADHGELGGSHQM HGKGASVYKEQIHVPMIISHPAYPGNKKCQALTCHLDIAPTLVGLTGLPEEKQHQALG NRKGVNFSGLLKNPESVAVNAVRNASLYCYGMILYTDAHYLHRVIALQRDKQKTVAQI KQEISHLHPDFSHRSGTRMINDGRYKFARYFSLREHNTPETWEDLIKYNDLELYDLKN DPDENHNLAADKQKYQDLILTMNEKLNKIIKDEIGVDDGSFMPDAAHEPWDLTIEQFN RMAKD" gene 98245..98785 /gene="yabF" /locus_tag="STM0085" /db_xref="GeneID:1251603" regulatory 98245..98250 /regulatory_class="ribosome_binding_site" /gene="yabF" /locus_tag="STM0085" /note="putative RBS for yabF; RegulonDB:STMS1H000471" CDS 98255..98785 /gene="yabF" /locus_tag="STM0085" /EC_number="1.6.99.-" /note="similar to E. coli putative NAD(P)H oxidoreductase (AAC73157.1); Blastp hit to AAC73157.1 (176 aa), 87% identity in aa 1 - 176" /codon_start=1 /transl_table=11 /product="glutathione-regulated potassium-efflux system ancillary protein KefF" /protein_id="NP_459090.1" /db_xref="GI:16763475" /db_xref="GeneID:1251603" /translation="MILIIYAHPYPHHSHANKRMLEQAGTLENVEIRSLYHLYPDFNI DVAAEQEALSRASLIVWQHPMQWYSVPPLLKLWMDKVLTHGWAYGHGGTALHGKHLLW AVTTGGGENHFAIGSHPGFDVLSQPLQATALYCGLKWLSPFAMHCTFICDDDTLQAQA RQYKQRLLAWQEVNHG" gene 98765..100640 /gene="kefC" /locus_tag="STM0086" /db_xref="GeneID:1251604" regulatory 98765..98770 /regulatory_class="ribosome_binding_site" /gene="yabF" /locus_tag="STM0085" /note="putative RBS for kefC; RegulonDB:STMS1H000472" CDS 98778..100640 /gene="kefC" /locus_tag="STM0086" /note="similar to E. coli K+ efflux antiporter, glutathione-regulated (AAC73158.1); Blastp hit to AAC73158.1 (620 aa), 90% identity in aa 1 - 619" /codon_start=1 /transl_table=11 /product="glutathione-regulated potassium-efflux system protein KefC" /protein_id="NP_459091.1" /db_xref="GI:16763476" /db_xref="GeneID:1251604" /translation="MDSHTLLQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPW GLRLVTDAESILHFAEIGVVLMLFVIGLELDPQRLWKLRASVFGGGALQMGVCGGLIG LFCMFLGLRWQVAELIGMTLALSSTAIAMQAMNERNLTVSQVGRSAFAVLLFQDIAAI PLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLLGRYVTRPALRFVARSGLREV FSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLF FIGVGMSIDFGTLVENPLRILLLLAGFLAIKIVMLWLVARPLGVPAKQRRWFAVLLGQ GSEFAFVVFGAAQMADVLEPEWAKALTLAVALSMAATPIFLVLLTRMEKTATGEAREA DEIDEEQPRVIVAGFGRFGQIAGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDA TRMDLLESAGAAKAEVLINAIDDPQTNLQLSELVKSHFPHLQIIARARDVDHYIRLRQ AGVAMPERETFEGALKSGRQALEALGLGRYEARERADLFRHFNTRMVEEMAKGENDPL SRAAAYKRTSAMLSEIITEDREHLSLIQRHGWQGTAEGKHSGEVADEPEVKPSI" gene 100826..101318 /gene="folA" /locus_tag="STM0087" /db_xref="GeneID:1251605" regulatory 100826..100831 /regulatory_class="ribosome_binding_site" /gene="folA" /locus_tag="STM0087" /note="putative RBS for folA; RegulonDB:STMS1H000473" CDS 100839..101318 /gene="folA" /locus_tag="STM0087" /EC_number="1.5.1.3" /note="trimethoprim resistance; similar to E. coli dihydrofolate reductase type I; trimethoprim resistance (AAC73159.1); Blastp hit to AAC73159.1 (159 aa), 96% identity in aa 1 - 159" /codon_start=1 /transl_table=11 /product="dihydrofolate reductase" /protein_id="NP_459092.1" /db_xref="GI:16763477" /db_xref="GeneID:1251605" /translation="MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGR HTWESIGRPLPGRKNIVISSQPGTDDRVQWVKSVDEAIAACGDAPEIMVIGGGRVYEQ FLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR" gene complement(101424..102272) /gene="apaH" /locus_tag="STM0088" /db_xref="GeneID:1251606" CDS complement(101424..102272) /gene="apaH" /locus_tag="STM0088" /EC_number="3.6.1.41" /note="bis(5'-nucleosyl)-tetraphosphatase. (SW:APAH_SALTY)" /codon_start=1 /transl_table=11 /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)" /protein_id="NP_459093.1" /db_xref="GI:16763478" /db_xref="GeneID:1251606" /translation="MATYLIGDVHGCYDELIALLQQVEFTPDTDTLWLTGDLVARGPG SLDVLRYVKSLGNSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWL RRQPLLQVDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMP NNWSPELSGLARLRFITNAFTRMRYCFPNGQLDMYSKASPENAPAPLKPWFAIPGPVS EAYSIAFGHWASLEGKGTPEGIYALDTGCCWGGELTCLRWEDKQYFVQPSNRQMDMGE GEAVNA" gene complement(102283..102674) /gene="apaG" /locus_tag="STM0089" /db_xref="GeneID:1251607" CDS complement(102283..102660) /gene="apaG" /locus_tag="STM0089" /note="APAG protein (CORD protein). (SW:APAG_SALTY)" /codon_start=1 /transl_table=11 /product="Co2+/Mg2+ efflux protein ApaG" /protein_id="NP_459094.1" /db_xref="GI:16763479" /db_xref="GeneID:1251607" /translation="MINSPRVCIQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQ LLGRYWLITNGHGRETEVQGEGVVGVQPRIAPGEEYQYTSGAVIETPLGTMQGHYEMI DENGDAFTIDIPVFRLAVPTLIH" gene complement(102663..103484) /gene="ksgA" /locus_tag="STM0090" /db_xref="GeneID:1251608" CDS complement(102663..103484) /gene="ksgA" /locus_tag="STM0090" /EC_number="2.1.1.-" /note="dimethyladenosine transferase. (SW:KSGA_SALTY)" /codon_start=1 /transl_table=11 /product="16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase" /protein_id="NP_459095.1" /db_xref="GI:16763480" /db_xref="GeneID:1251608" /translation="MNNRVHQGHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEI GPGLAALTEPVGERLDKLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELSA QLGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKEYGRL SVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAF NQRRKTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPLKES" regulatory complement(102669..102674) /regulatory_class="ribosome_binding_site" /gene="apaG" /locus_tag="STM0089" /note="putative RBS for apaG; RegulonDB:STMS1H000474" gene complement(103481..104470) /gene="pdxA" /locus_tag="STM0091" /db_xref="GeneID:1251609" CDS complement(103481..104470) /gene="pdxA" /locus_tag="STM0091" /note="pyridoxine phosphate biosynthetic protein PdxJ-PdxA subunit; similar to E. coli pyridoxine biosynthesis (AAC73163.1); Blastp hit to AAC73163.1 (329 aa), 92% identity in aa 1 - 329" /codon_start=1 /transl_table=11 /product="4-hydroxythreonine-4-phosphate dehydrogenase PdxA" /protein_id="NP_459096.1" /db_xref="GI:16763481" /db_xref="GeneID:1251609" /translation="MSSAQRVVITPGEPAGSGPDLVVQLAQRAWPIELVVCADGALLT ERAAMLGLPLSLLPYSPDVPAAPQPAGTLTLLPVSLRAPAISGQLTVENGPYVVETLA RACDGCLNGEFAALITGPVHKGVINDAGISFTGHTEFFEERSQAKKVVMMLATEELRV ALATTHLPLRAIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHM GTEEIDTIIPVLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQ GFGRGVNITLGLPFIRTSVDHGTALELAGRGKADVGSFITALNLAIKMIVNTQ" gene complement(104470..105767) /gene="surA" /locus_tag="STM0092" /db_xref="GeneID:1251610" CDS complement(104470..105756) /gene="surA" /locus_tag="STM0092" /EC_number="5.2.1.8" /note="survival protein; similar to E. coli survival protein (AAC73164.1); Blastp hit to AAC73164.1 (428 aa), 91% identity in aa 1 - 428" /codon_start=1 /transl_table=11 /product="peptidylprolyl isomerase SurA" /protein_id="NP_459097.1" /db_xref="GI:16763482" /db_xref="GeneID:1251610" /translation="MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDG LMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIAN IAKQNNMTMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDAL AKQIGTQNDASTELNLSHILIALPENPTSEQVNDAQRQAESIVEEARNGADFGKLAIT YSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQ SQSISVTEVHARHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGS ANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLIELLDTRKVDKTDAA QKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN" regulatory complement(105762..105767) /regulatory_class="ribosome_binding_site" /gene="surA" /locus_tag="STM0092" /note="putative RBS for surA; RegulonDB:STMS1H000475" gene complement(105810..108170) /gene="imp" /locus_tag="STM0093" /db_xref="GeneID:1251611" CDS complement(105810..108170) /gene="imp" /locus_tag="STM0093" /note="similar to E. coli organic solvent tolerance (AAC73165.1); Blastp hit to AAC73165.1 (784 aa), 91% identity in aa 1 - 784" /codon_start=1 /transl_table=11 /product="LPS assembly protein LptD" /protein_id="NP_459098.1" /db_xref="GI:16763483" /db_xref="GeneID:1251611" /translation="MKKRIPTLLATMIASALYSHQGLAADLASQCMLGVPSYDRPLVK GDTNDLPVTINADNAKGNYPDDAVFTGNVDIMQGNSRLQADEVQLHQKQAEGQPEPVR TVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGEN RYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKVGPVPIFYSPYLQL PVGDKRRSGFLIPNAKYTTKNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEF RYLTQAGEGVMELDYLPSDKVYEDDHPKEGDKHRWLFYWQHSGVMDQVWRFNVDYTKV SDSSYFNDFDSKYGSSTDGYATQKFSVGYAVQNFDATVSTKQFQVFNDQNTSSYSAEP QLDVNYYHNDLGPFDTRIYGQAVHFVNTKDNMPEATRVHLEPTINLPLSNRWGSLNTE AKLMATHYQQTNLDSYNSDPNNKNKLEDSVNRVMPQFKVDGKLIFERDMAMLAPGYTQ TLEPRVQYLYVPYRDQSGIYNYDSSLLQSDYNGLFRDRTYGGLDRIASANQVTTGVTT RIYDDAAVERFNVSVGQIYYFTESRTGDDNIKWENDDKTGSLVWAGDTYWRISERWGL RSGVQYDTRLDSVATSSSSLEYRRDQDRLVQLNYRYASPEYIQATLPSYYSTAEQYKN GINQVGAVASWPIADRWSIVGAYYFDTNSSKPADQMLGLQYNSCCYAIRVGYERKLNG WDNDKQHAIYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQSSM" gene 108413..109236 /gene="djlA" /locus_tag="STM0094" /db_xref="GeneID:1251612" regulatory 108413..108418 /regulatory_class="ribosome_binding_site" /gene="djlA" /locus_tag="STM0094" /note="putative RBS for djlA; RegulonDB:STMS1H000476" CDS 108424..109236 /gene="djlA" /locus_tag="STM0094" /note="similar to E. coli putative DNA binding protein (AAC73166.1); Blastp hit to AAC73166.1 (271 aa), 95% identity in aa 1 - 271" /codon_start=1 /transl_table=11 /product="molecular chaperone DjlA" /protein_id="NP_459099.1" /db_xref="GI:16763484" /db_xref="GeneID:1251612" /translation="MQYWGKIIGVAVALMMGGGFWGVVLGLLVGHMFDKARSRKMAWF ANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGDSRTAAQNAFR VGKADNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNEREVLYVIAEE LGISRVQFDQFLRMMQGGAQFGGGYHQQSGGGWQQAQRGPTLEDACNVLGVKTTDDAT TIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAYELIKEQKGFK" gene complement(109331..110002) /gene="rluA" /locus_tag="STM0095" /db_xref="GeneID:1251613" CDS complement(109331..109990) /gene="rluA" /locus_tag="STM0095" /EC_number="4.2.1.70" /note="similar to E. coli pseudouridylate synthase (AAC73169.1); Blastp hit to AAC73169.1 (219 aa), 95% identity in aa 1 - 219" /codon_start=1 /transl_table=11 /product="bifunctional tRNA pseudouridine(32) synthase/ribosomal large subunit pseudouridine synthase RluA" /protein_id="NP_459100.1" /db_xref="GI:16763485" /db_xref="GeneID:1251613" /translation="MGMENYNPPQEPWLVILYQDEHIMVVNKPSGLLSVPGRLEAHKD SIMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWG HPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYNVVEFAADNTARVVLKPITGR SHQLRVHMLALGHPILGDRFYASPEALSLAPRLQLHAEMLTITHPAYGNSMTFKVPAD F" regulatory complement(109997..110002) /regulatory_class="ribosome_binding_site" /gene="rluA" /locus_tag="STM0095" /note="putative RBS for rluA; RegulonDB:STMS1H000477" gene complement(110002..112908) /gene="hepA" /locus_tag="STM0096" /db_xref="GeneID:1251614" CDS complement(110002..112908) /gene="hepA" /locus_tag="STM0096" /note="putative SNF2 family RNA helicase; similar to E. coli probable ATP-dependent RNA helicase (AAC73170.1); Blastp hit to AAC73170.1 (968 aa), 93% identity in aa 1 - 968" /codon_start=1 /transl_table=11 /product="RNA polymerase-binding ATPase" /protein_id="NP_459101.1" /db_xref="GI:16763486" /db_xref="GeneID:1251614" /translation="MPFTLGQRWISDTESELGLGTVVAMDARTVTLLFPSTGENRLYA RSDSPVTRVMFNPGDTITSHEGWQLHIDEVKEENGLLVYVGTRLDTEETNVTLREVLL DSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPYSGLRGQRTNLIPHQLN IAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVE MLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLCDAEWDL LVVDEAHHLVWSTDAPSREYMAIEQLAERVPGVLLLTATPEQLGMESHFARLRLLDPN RFHDFEQFVEEQKNYRPVADAVAMLLAGNKLSNDELNRLGDLIGEQDIEPLLQAANSD RDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTVKLPLPTQYQTAIKV SGIMGARKSPEDRARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLV ICAKATTALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIG SEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRW YHEGLDAFEHTCPTGRAIYDSAYASLINYLAAPEETDGFDDLIKSCREQHEALKAQLE QGRDRLLEIHSNGGEKAQQLAQSIEEQDDDTNLIAFAMNLFDIVGINQDDRGDNLIVL TPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGS STISLLKNKALPVGTLLVELVYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQV EFETFNRQLSAVNRHTGSKLVNAVQQDVHAILQLGETQIEKSARALIDNARREADEKL SGELSRLEALRAVNPNIRDDELAAIDSNRQQVLESLNQAGWRLDALRLIVVTHQ" gene complement(113082..115445) /gene="polB" /locus_tag="STM0097" /db_xref="GeneID:1251615" CDS complement(113082..115433) /gene="polB" /locus_tag="STM0097" /EC_number="2.7.7.7" /note="3'->5' exonuclease; similar to E. coli DNA polymerase II (AAC73171.1); Blastp hit to AAC73171.1 (783 aa), 89% identity in aa 1 - 783" /codon_start=1 /transl_table=11 /product="DNA polymerase II" /protein_id="NP_459102.1" /db_xref="GI:16763487" /db_xref="GeneID:1251615" /translation="MAQAGFILTRHWRDTPQGTEVSFWLATDNGPVQATLAPQESVAF IPTSQTSRAASLLQAEKDYRLTPLQLRDFHRQPVSGLYCRTHRQLMRMEKLLRENGVT VYEADVRPPERYLMERFITSPVWVDGEMRNGVIRNARLKPHSDYRPPLKWVSLDIETT RHGELYCIGLEGCGQRTVYMLGPANGDDHQLDFELVYVASRPQLLEKLNAWFAEHDPD VIIGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQARGRVIID GIDALKSAFWNFSSFSLEAVSQELLGEGKSIDNPWDRMDEIDRRFAQDKPALATYNLK DCELVTRIFHKTEIMPFLLERATINGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLG EVPPLASPGGYVMDSQPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHS TEGFLDAWFSREKHCLPEIVSQIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTAC RFFDPRLASSITMRGHAIMRQTKALIEAQGYDVIYGDTDSTFVWLRRAHSEADAAEIG HRLVRHVNEWWAQTLQQQNLTSALELEFETHFCRFLMPTIRGADTGSKKRYAGLIQEG DSQRMVFKGLETVRTDWTPLAQRFQQELYLRVFRNEPYQDYVRETIDKLMAGELDAQL VYRKRLRRPLHEYQRNVPPHVRAARLADEQNLKQGRPAQYQNRGAIKYVWTVNGPEPV DYQQSPLDYEHYLTRQLQPVAEGILPFVEDNFATLLTGQLGLF" regulatory complement(115440..115445) /regulatory_class="ribosome_binding_site" /gene="polB" /locus_tag="STM0097" /note="putative RBS for polB; RegulonDB:STMS1H000478" gene complement(115477..116102) /locus_tag="STM0098" /db_xref="GeneID:1251616" CDS complement(115477..116097) /locus_tag="STM0098" /note="similar to E. coli orf, hypothetical protein (AAC76121.1); Blastp hit to AAC76121.1 (230 aa), 24% identity in aa 19 - 171" /codon_start=1 /transl_table=11 /product="putative secreted protein" /protein_id="NP_459103.1" /db_xref="GI:16763488" /db_xref="GeneID:1251616" /translation="MKYRYIIRIAAGIILIMATVFIHNAIAIYQFSQQNQTRVADCAI VAGAGVSGKTPSPVFQARLDHAIWLYQQHIVRALVLTGGYGAGATVSDAAIARQYVLE KGIPAKAIFIEERSTVTRENIRYAKQILRQQQWRTALLVSDPLHMLRLKTIAQDNGID SRSSPTRSTRYKSWWAQTRFLLRETFYYSGYRLLRYMPVQNNSITP" regulatory complement(116097..116102) /regulatory_class="ribosome_binding_site" /locus_tag="STM0098" /note="putative RBS for STM0098; RegulonDB:STMS1H000479" gene 116294..116601 /locus_tag="STM0099" /db_xref="GeneID:1251617" regulatory 116294..116299 /regulatory_class="ribosome_binding_site" /locus_tag="STM0099" /note="putative RBS for STM0099; RegulonDB:STMS1H000480" CDS 116299..116601 /locus_tag="STM0099" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_446563.1" /db_xref="GI:1109557567" /db_xref="GeneID:1251617" /translation="MNVACDGPSGQGPWMGRVIRSQHISNSKYEGYNDAGVDSRYNYP ITANFESFLFTVFTHVLAVLCQVCFHTLSIFQKGACSNLLLISRINKKAIFFVCFN" gene 116816..117235 /locus_tag="STM0100" /db_xref="GeneID:1251618" CDS 116816..117235 /locus_tag="STM0100" /codon_start=1 /transl_table=11 /product="DUF4751 domain-containing protein" /protein_id="NP_459105.1" /db_xref="GI:16763490" /db_xref="GeneID:1251618" /translation="MNVSMQARLVGNDRYLFVNTQRANPSIKTVSRFFEYKTWTEQIW RTEIIENGNAFFHWQGHDRKNGHRDTIINYLLNGQRWQSTIEDYIFFHALEGKAWQGH YDNIIEYVSSDHYVYQSAFAEYITDQIHQRAPHGTRF" gene complement(117241..117949) /gene="araD" /locus_tag="STM0101" /db_xref="GeneID:1251619" CDS complement(117241..117936) /gene="araD" /locus_tag="STM0101" /EC_number="5.1.3.4" /note="L-ribulose-5-phosphate 4-epimerase. (SW:ARAD_SALTY)" /codon_start=1 /transl_table=11 /product="L-ribulose-5-phosphate 4-epimerase" /protein_id="NP_459106.1" /db_xref="GI:16763491" /db_xref="GeneID:1251619" /translation="MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVLVIKPS GVDYSVMTADDMVVVSLESGEVVEGHKKPSSDTPTHRLLYQAFPTIGGIVHTHSRHAT IWAQAGQPIPATGTTHADYFYGTIPCTRKMTEAEINGEYEWETGNVIVETFEKQGIDA AQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQSLLDKH YLRKHGAKAYYGQ" regulatory complement(117944..117949) /regulatory_class="ribosome_binding_site" /gene="araD" /locus_tag="STM0101" /note="putative RBS for araD; RegulonDB:STMS1H000481" gene complement(118077..119591) /gene="araA" /locus_tag="STM0102" /db_xref="GeneID:1251620" CDS complement(118077..119579) /gene="araA" /locus_tag="STM0102" /EC_number="5.3.1.4" /note="L-arabinose isomerase. (SW:ARAA_SALTY)" /codon_start=1 /transl_table=11 /product="L-arabinose isomerase" /protein_id="NP_459107.1" /db_xref="GI:16763492" /db_xref="GeneID:1251620" /translation="MTIFDNYEVWFVIGSQHLYGAETLRQVTQHAEHVVNALNTEAKL PCKLVLKPLGTSPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLSILNKPLLQ FHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKEAHTRI GAWMRQAVSKQDTRQLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVV NSIGDGDINALIDEYESSYTLTPATQIHGDKRQNVREAARIELGMKRFLEQGGFHAFT TTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMED YTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKEDPARLIFNTQTGPAI VASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHH TVFSHALDLNDMRQFAEIHDIEIAVIDNDTHLPAFKDALRWNEVYYGFKR" regulatory complement(119586..119591) /regulatory_class="ribosome_binding_site" /gene="araA" /locus_tag="STM0102" /note="putative RBS for araA; RegulonDB:STMS1H000482" gene complement(119590..121412) /gene="araB" /locus_tag="STM0103" /db_xref="GeneID:1251621" CDS complement(119590..121299) /gene="araB" /locus_tag="STM0103" /EC_number="2.7.1.16" /note="L-ribulokinase. (SW:KIRI_SALTY)" /codon_start=1 /transl_table=11 /product="ribulokinase" /protein_id="NP_459108.1" /db_xref="GI:16763493" /db_xref="GeneID:1251621" /translation="MAIAIGLDFGSDSVRALAVDCATGDEIATSVEWYPRWQEGRYCD GPNNQFRHHPRDYMESMEAALKAVLAQLSAAQRANVVGIGVDSTGSTPAPIDADGNVL ALRPEFAENPNAMFVLWKDHTAVEEADEITRLCHKPGKVDYSRYIGGIYSSEWFWAKI LHVTRQDSAVAQAAVSWIELCDWVPALLSGTTRPQDIRRGRCSAGHKTLWHESWGGLP PASFFDELDPCINRHLRYPLFSETFTADLPVGTLCAEWAQRLDLPESVVISGGAFDCH MGAVGAGAQPNTLVKVIGTSTCDILIADKQSVGDRAVKGICGQVDGSVVPNFIGLEAG QSAFGDIYAWFSRVLSWPLEQLAAQHPELKPQINASQKQLLPALTDAWAKNPSLDHLP VVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLVASTAFGARAIQECFTDQGI AVNNVMALGGIARKNQVIMQVCCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIP AAQQSMASAVERTLRPHPEQAQRFEQLYRRYQQWALSAEQHYLPTAAPAPTTPANQAI LTH" regulatory complement(121307..121312) /regulatory_class="ribosome_binding_site" /gene="araB" /locus_tag="STM0103" /note="putative RBS for araB; RegulonDB:STMS1H000483" protein_bind complement(121352..121370) /gene="araB" /locus_tag="STM0103" /note="putative binding site for AraC, RegulonDB: STMS1H000003" /bound_moiety="AraC" protein_bind 121374..121392 /note="putative binding site for AraC, RegulonDB: STMS1H000008" /bound_moiety="AraC" protein_bind complement(121378..121396) /gene="araB" /locus_tag="STM0103" /note="putative binding site for AraC, RegulonDB: STMS1H000007" /bound_moiety="AraC" regulatory complement(121385..121393) /regulatory_class="minus_10_signal" /gene="araB" /locus_tag="STM0103" /note="putative -10_signal for araB; RegulonDB:STMLTH004463" regulatory complement(121404..121412) /regulatory_class="minus_35_signal" /gene="araB" /locus_tag="STM0103" /note="putative -35_signal for araB; RegulonDB:STMLTH004463" protein_bind complement(121406..121433) /note="putative binding site for CRP, RegulonDB: STMS1H000094" /bound_moiety="CRP" protein_bind 121412..121432 /note="putative binding site for CRP, RegulonDB: STMS1H000082" /bound_moiety="CRP" protein_bind 121430..121448 /note="putative binding site for AraC, RegulonDB: STMS1H000012" /bound_moiety="AraC" protein_bind 121464..121482 /note="putative binding site for AraC, RegulonDB: STMS1H000006" /bound_moiety="AraC" gene 121528..122485 /gene="araC" /locus_tag="STM0104" /db_xref="GeneID:1251622" regulatory 121528..121536 /regulatory_class="minus_35_signal" /gene="araC" /locus_tag="STM0104" /note="putative -35_signal for araC; RegulonDB:STMLTH004464" regulatory 121552..121560 /regulatory_class="minus_10_signal" /gene="araC" /locus_tag="STM0104" /note="putative -10_signal for araC; RegulonDB:STMLTH004464" protein_bind 121590..121608 /gene="araC" /locus_tag="STM0104" /note="putative binding site for AraC, RegulonDB: STMS1H000004" /bound_moiety="AraC" protein_bind complement(121602..121620) /note="putative binding site for AraC, RegulonDB: STMS1H000009" /bound_moiety="AraC" regulatory 121632..121637 /regulatory_class="ribosome_binding_site" /gene="araC" /locus_tag="STM0104" /note="putative RBS for araC; RegulonDB:STMS1H000484" CDS 121640..122485 /gene="araC" /locus_tag="STM0104" /note="arabinose operon regulatory protein. (SW:ARAC_SALTY)" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator AraC" /protein_id="NP_459109.1" /db_xref="GI:16763494" /db_xref="GeneID:1251622" /translation="MAETQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKG YILNLTIRGEGVINNNGEQFVCRPGDILLFPPGEIHHYGRHPDASEWYHQWVYFRPRA YWQEWLTWPTIFAQTGFFRPDEARQPHFSELFGQIISAGQGEGRYSELLAINLLEQLL LRRMAVINESLHPPMDSRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQ LGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEF RAGCE" gene 122593..123371 /gene="yabI" /locus_tag="STM0105" /db_xref="GeneID:1251623" regulatory 122593..122598 /regulatory_class="ribosome_binding_site" /gene="yabI" /locus_tag="STM0105" /note="putative RBS for yabI; RegulonDB:STMS1H000485" CDS 122604..123371 /gene="yabI" /locus_tag="STM0105" /note="similar to E. coli orf, hypothetical protein (AAC73176.1); Blastp hit to AAC73176.1 (254 aa), 89% identity in aa 1 - 253" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459110.1" /db_xref="GI:16763495" /db_xref="GeneID:1251623" /translation="MQALLEHFITQSTLYSLIAVLLVAFLESLALVGLILPGTVLMAG LGALIGSGELNFWHAWLVGIIGCLMGDWISFWLGWRFKKPLHRWSFMKKNKSLLDKTE HALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFIGPNLIGCLLWPPFYFLPGI LAGAAIDIPSDMQSGDFKWLLLATALLLWVGGWLCWRLWRSGKAAVDRLTAYFPRSRL LYLAPLTLGIGVVALVVLVRHPLMPVYIDILRKVVGY" gene complement(123410..124136) /gene="yabJ" /locus_tag="STM0106" /db_xref="GeneID:1251624" CDS complement(123410..124117) /gene="yabJ" /locus_tag="STM0106" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73177.1); Blastp hit to AAC73177.1 (232 aa), 84% identity in aa 1 - 230" /codon_start=1 /transl_table=11 /product="thiamine ABC transporter ATP-binding protein" /protein_id="NP_459111.1" /db_xref="GI:16763496" /db_xref="GeneID:1251624" /translation="MLKLIDITWLYHHLPMRFTLAVERGEQVAILGPSGAGKSTLLNL IAGFLAPASGTLLIAGDDHTLTPPSRRPVSMLFQENNLFSHLNVQQNIGLGLNPGLTL NASQREKRDAIAHQMGIESLMTRLPGELSGGQRQRVALARCLVREQPVLLLDEPFSAL DPALRQEMLTLVSDICRERQLTLLMVSHSVEDAARIAPRSIVVADGRIAWQGKTDELL SGQASASALLGIKSHIL" gene complement(124101..125728) /gene="yabK" /locus_tag="STM0107" /db_xref="GeneID:1251625" CDS complement(124101..125711) /gene="yabK" /locus_tag="STM0107" /note="similar to E. coli putative transport system permease protein (AAC73178.1); Blastp hit to AAC73178.1 (536 aa), 89% identity in aa 1 - 536" /codon_start=1 /transl_table=11 /product="thiamine/thiamine pyrophosphate ABC transporter permease ThiP" /protein_id="NP_459112.1" /db_xref="GI:16763497" /db_xref="GeneID:1251625" /translation="MATRRQPLIPGWLIPGLCAAALMITVSLAAFLALWLNAPSGAWS TIWRDSYLWHVVRFSFWQAFLSAVLSVVPAVFLARALYRRRFPGRLALLRLCAMTLIL PVLVAVFGILSVYGRQGWLASLWQMLGLQWTFSPYGLQGILLAHVFFNLPMASRLLLQ SLESIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLG GGPQATTIELAIFQALSYDYDPARAAMLALIQMVCCLALVLLSQRLSKAIAPGMTLTQ GWRDPDDRLHSRLTDALLIVLALLLLLPPLVAVVVDGVNRSLPEVLAQPILWQAVWTS LRIALAAGVLCVVLTMMLLWSSRELRQRQQLFAGQTLELSGMLILAMPGIVLATGFFL LLNNSVGLPESADGIVIFTNALMAIPYALKVLENPMRDITARYGMLCQSLGIEGWSRL KIVELRALKRPLAQALAFACVLSIGDFGVVALFGNDNFRTLPFYLYQQIGSYRSQDGA VTALILLLLCFTLFTLIEKLPGRHAKTD" regulatory complement(124131..124136) /regulatory_class="ribosome_binding_site" /gene="yabJ" /locus_tag="STM0106" /note="putative RBS for yabJ; RegulonDB:STMS1H000486" gene complement(125687..126680) /gene="tbpA" /locus_tag="STM0108" /db_xref="GeneID:1251626" CDS complement(125687..126670) /gene="tbpA" /locus_tag="STM0108" /note="similar to E. coli thiamin-binding periplasmic protein (AAC73179.1); Blastp hit to AAC73179.1 (327 aa), 91% identity in aa 1 - 327" /codon_start=1 /transl_table=11 /product="thiamine ABC transporter substrate binding subunit" /protein_id="NP_459113.1" /db_xref="GI:16763498" /db_xref="GeneID:1251626" /translation="MLKKYLPLLLLCAAPAFAKPVLTVYTYDSFAADWGPGPAVKKAF EADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLEAATQTKLFAKSGVA NEAVKVPGGWKNDTFVPFDYGYFAFVYDKSKLKNPPKSLKELVESDQKWRVIYQDPRT STPGLGLLLWMRKVYGDNAPQAWQKLAAKTVTVTKGWSEAYGLFLKGESDLVLSYTTS PAYHIIEEKKDNYAAANFSEGHYLQVEVAARTVASKQPELAEKFLKFMVSPAFQNAIP TGNWMYPVADVALPAGFESLAKPATTLEFTPQQVAAQRQAWISEWQRAVSR" regulatory complement(125723..125728) /regulatory_class="ribosome_binding_site" /gene="tbpA" /locus_tag="STM0108" /note="putative RBS for yabK; RegulonDB:STMS1H000487" regulatory complement(126675..126680) /regulatory_class="ribosome_binding_site" /gene="tbpA" /locus_tag="STM0108" /note="putative RBS for tbpA; RegulonDB:STMS1H000488" gene complement(126848..128522) /gene="yabN" /locus_tag="STM0109" /db_xref="GeneID:1251627" CDS complement(126848..128506) /gene="yabN" /locus_tag="STM0109" /note="similar to E. coli putative transport protein (AAC73180.1); Blastp hit to AAC73180.1 (551 aa), 85% identity in aa 1 - 551" /codon_start=1 /transl_table=11 /product="transcriptional regulator SgrR" /protein_id="NP_459114.1" /db_xref="GI:16763499" /db_xref="GeneID:1251627" /translation="MPSGRLQQQFIRLWQCCDGKTQDTTLNELADLLNCSRRHMRTLL NTMQARGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKSA VRQMLISHLGRSFRQGRHILRVLYYRPMHNLLPGTALRRSETHIARQIFSSLTRVNEE NGELEADIAHHWQQISPLLWRFYLRPGIHFHHGRELEMEDVISSLTRINTLPLYSHIT KIDSPTAWTLDIHLSQPDRWLPWLLGQVPAMILPRKWETLANFASHPIGTGPYAVRRN TPNQLKILAFDDYFGYRALIDEVNVWVLPDISEEPACGLMLEGPIQGGEKAIESRLEE GCYYLLFDARTPRGAHPQVREWVSHVLSPTNLLYHADEPLQQLWFPAYGLLPRWHHAR PGPGEKPAGLETLTLTFYREHIEHRVIARIMSALLAEHQVHLHIQEIDYDQWHAGEIE SDIWLNSANFTLPLDFSLFAHLCEVPLLQNCIPRDWQGDAAQWRAGEMNLANWCQQLL ANKAIVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP" regulatory complement(128517..128522) /regulatory_class="ribosome_binding_site" /gene="yabN" /locus_tag="STM0109" /note="putative RBS for yabN; RegulonDB:STMS1H000489" gene complement(129057..129674) /gene="leuD" /locus_tag="STM0110" /db_xref="GeneID:1251628" CDS complement(129057..129662) /gene="leuD" /locus_tag="STM0110" /EC_number="4.2.1.33" /note="3-isopropylmalate dehydratase small subunit. (SW:LEUD_SALTY)" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydratase small subunit" /protein_id="NP_459115.1" /db_xref="GI:16763500" /db_xref="GeneID:1251628" /translation="MAEKFTQHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLF NDWRFLDEKGQQPNPEFVLNFPEYQGASILLARENFGCGSSREHAPWALTDYGFKVVI APSFADIFYGNSFNNQLLPVTLSDAQVDELFALVKANPGIKFEVDLEAQVVKAGDKTY SFKIDDFRRHCMLNGLDSIGLTLQHEDAIAAYENKQPAFMR" regulatory complement(129669..129674) /regulatory_class="ribosome_binding_site" /gene="leuD" /locus_tag="STM0110" /note="putative RBS for leuD; RegulonDB:STMS1H000490" gene complement(129673..131086) /gene="leuC" /locus_tag="STM0111" /db_xref="GeneID:1251629" CDS complement(129673..131073) /gene="leuC" /locus_tag="STM0111" /EC_number="4.2.1.33" /note="3-isopropylmalate dehydratase large subunit. (SW:LEU2_SALTY)" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydratase large subunit" /protein_id="NP_459116.1" /db_xref="GI:16763501" /db_xref="GeneID:1251629" /translation="MAKTLYEKLFDAHVVFEAPNETPLLYIDRHLVHEVTSPQAFDGL RAHHRPVRQPGKTFATMDHNVSTQTKDINASGEMARIQMQELIKNCNEFGVELYDLNH PYQGIVHVMGPEQGVTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQ GRAKTMKIEVTGNAAPGITAKDIVLAIIGKTGSAGGTGHVVEFCGDAIRALSMEGRMT LCNMAIEMGAKAGLVAPDETTFNYVKGRLHAPKGRDFDEAVEYWKTLKTDDGATFDTV VALRAEEIAPQVTWGTNPGQVISVTDIIPDPASFSDPVERASAEKALAYMGLQPGVPL TDVAIDKVFIGSCTNSRIEDLRAAAEVAKGRKVAPGVQALVVPGSGPVKAQAEAEGLD KIFIEAGFEWRLPGCSMCLAMNNDRLNPGERCASTSNRNFEGRQGRGGRTHLVSPAMA AAAAVTGHFADIRSIK" gene complement(131076..132181) /gene="leuB" /locus_tag="STM0112" /db_xref="GeneID:1251630" CDS complement(131076..132167) /gene="leuB" /locus_tag="STM0112" /EC_number="1.1.1.85" /note="3-isopropylmalate dehydrogenase. (SW:LEU3_SALTY)" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydrogenase" /protein_id="NP_459117.1" /db_xref="GI:16763502" /db_xref="GeneID:1251630" /translation="MSKNYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYD VGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWENLPPESQPERGALLPLRKHF KLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK AFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQSSILWREIVNDVAKTYPD VELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG FGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDANDAATAIEQAINRALEEGV RTGDLARGAAAVSTDEMGDIIARYVAEGV" regulatory complement(131081..131086) /regulatory_class="ribosome_binding_site" /gene="leuB" /locus_tag="STM0112" /note="putative RBS for leuC; RegulonDB:STMS1H000491" gene complement(132167..133758) /gene="leuA" /locus_tag="STM0113" /db_xref="GeneID:1251631" CDS complement(132167..133738) /gene="leuA" /locus_tag="STM0113" /EC_number="2.3.3.13" /note="similar to E. coli 2-isopropylmalate synthase (AAC73185.1); Blastp hit to AAC73185.1 (523 aa), 92% identity in aa 1 - 523" /codon_start=1 /transl_table=11 /product="2-isopropylmalate synthase" /protein_id="NP_459118.1" /db_xref="GI:16763503" /db_xref="GeneID:1251631" /translation="MSQQVIIFDTTLRDGEQALQASLSAKEKLQIALALERMGVDVME VGFPVSSPGDFESVQTIARTIKNSRVCALARCVEKDIDVAAQALKVADAFRIHTFIAT SPMHIATKLRSTLDEVIERAVYMVKRARNYTDDVEFSCEDAGRTPVDDLARVVEAAIN AGARTINIPDTVGYTMPFEFAGIISGLYERVPNIDKAIISVHTHDDLGIAVGNSLAAV HAGARQVEGAMNGIGERAGNCALEEVIMAIKVRKDIMNVHTNINHHEIWRTSQTVSQI CNMPIPANKAIVGSGAFAHSSGIHQDGVLKNRENYEIMTPESIGLNQIQLNLTSRSGR AAVKHRMEEMGYKDTDYNMDHLYDAFLKLADKKGQVFDYDLEALAFINKQQEEPEHFR LDYFSVQSGSSDIATASVKLACGEEIKAEAANGNGPVDAIYQAINRITGYDVELVKYD LNAKGQGKDALGQVDIVVNHHGRRFHGVGLATDIVESSAKAMVHVLNNIWRAAEVEKE LQRKAQNKENNKETV" regulatory complement(132176..132181) /regulatory_class="ribosome_binding_site" /gene="leuB" /locus_tag="STM0112" /note="putative RBS for leuB; RegulonDB:STMS1H000492" regulatory complement(133753..133758) /regulatory_class="ribosome_binding_site" /gene="leuA" /locus_tag="STM0113" /note="putative RBS for leuA; RegulonDB:STMS1H000493" gene complement(133826..134057) /gene="leuL" /locus_tag="STM0114" /db_xref="GeneID:1251632" CDS complement(133826..133912) /gene="leuL" /locus_tag="STM0114" /note="leu operon leader peptide. (SW:LPL_SALTY)" /codon_start=1 /transl_table=11 /product="leu operon leader peptide" /protein_id="NP_459119.1" /db_xref="GI:16763504" /db_xref="GeneID:1251632" /translation="MSHIVRFTGLLLLNAFIVRGRPVGGIQH" regulatory complement(133921..133926) /regulatory_class="ribosome_binding_site" /gene="leuL" /locus_tag="STM0114" /note="putative RBS for leuL; RegulonDB:STMS1H000494" regulatory complement(134030..134038) /regulatory_class="minus_10_signal" /gene="leuL" /locus_tag="STM0114" /note="putative -10_signal for leuL; RegulonDB:STMLTH004472" regulatory complement(134049..134057) /regulatory_class="minus_35_signal" /gene="leuL" /locus_tag="STM0114" /note="putative -35_signal for leuL; RegulonDB:STMLTH004472" gene 134557..135513 /gene="leuO" /locus_tag="STM0115" /db_xref="GeneID:1251633" regulatory 134557..134562 /regulatory_class="ribosome_binding_site" /gene="leuO" /locus_tag="STM0115" /note="putative RBS for leuO; RegulonDB:STMS1H000495" CDS 134569..135513 /gene="leuO" /locus_tag="STM0115" /note="probable activator protein in leuabcd operon. (SW:LEUO_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional regulator LeuO" /protein_id="NP_459120.1" /db_xref="GI:16763505" /db_xref="GeneID:1251633" /translation="MPEVKTEKPHLLDMGKPQLRMVDLNLLTVFDAVMQEQNITRAAH TLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPG SGFEPTSSERVFNLCVCSPLDNILTSQIYNRVEKIAPNIHVVFKASLNQNTEHQLRYQ ETEFVISYEEFRRPEFTSVPLFKDEMVLVASRKHPRISGPLLEGDVYNEQHAVVSLDR YASFSQPWYDTPDKQSSVAYQGMALISVLNVVSQTHLVAIAPRWLAEEFAESLDLQIL PLPLKLNSRTCYLSWHEAAGRDKGHQWMEDLLVSVCKR" protein_bind 135700..135712 /note="putative binding site for Lrp, RegulonDB: STMS1H000262" /bound_moiety="Lrp" protein_bind 135720..135732 /note="putative binding site for Lrp, RegulonDB: STMS1H000266" /bound_moiety="Lrp" gene 135770..137559 /gene="ilvI" /locus_tag="STM0116" /db_xref="GeneID:1251634" regulatory 135770..135778 /regulatory_class="minus_35_signal" /gene="ilvI" /locus_tag="STM0116" /note="putative -35_signal for ilvI; RegulonDB:STMLTH004475" protein_bind 135773..135795 /gene="ilvI" /locus_tag="STM0116" /note="putative binding site for Lrp, RegulonDB: STMS1H000252" /bound_moiety="Lrp" regulatory 135797..135805 /regulatory_class="minus_10_signal" /gene="ilvI" /locus_tag="STM0116" /note="putative -10_signal for ilvI; RegulonDB:STMLTH004475" protein_bind 135836..135850 /gene="ilvI" /locus_tag="STM0116" /note="putative binding site for Lrp, RegulonDB: STMS1H000253" /bound_moiety="Lrp" regulatory 135884..135889 /regulatory_class="ribosome_binding_site" /gene="ilvI" /locus_tag="STM0116" /note="putative RBS for ilvI; RegulonDB:STMS1H000496" CDS 135898..137559 /gene="ilvI" /locus_tag="STM0116" /EC_number="4.1.3.-" /note="acetolactate synthase isozyme III large subunit. (SW:ILVI_SALTY)" /codon_start=1 /transl_table=11 /product="valine sensitive acetolactate synthase III, large subunit" /protein_id="NP_459121.1" /db_xref="GI:16763506" /db_xref="GeneID:1251634" /translation="MFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARAT GDVGVVLVTSGPGATNAITGIATAYMDSIPLVILSGQVATSLIGYDAFQECDMVGISR PVVKHSFLVKQTEDIPLVLKKAFWLAASGRPGPVVVDLPKDILNPAKKMPYAWPETVS MRSYNPTTSGHKGQIKRALQTLASAKKPVVYVGGGAISAACYAPLRHIIETFNLPVVS SLMGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPN ATVLHIDIDPTSISKTVNADIPVVGDARLVLEQMLELLAQDAPSQPQDDIRDWWQQIE SWRARQCLKYDAESESIKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRR WINSGGLGTMGFGLPAALGVKMALPKEMVVCVTGDGSIQMNIQELSTALQYELPVLVL NLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGLQINRPDELESKLS EALEHVRNNRLVFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT" protein_bind 135926..135938 /gene="ilvI" /locus_tag="STM0116" /note="putative binding site for Lrp, RegulonDB: STMS1H000264" /bound_moiety="Lrp" protein_bind 135928..135942 /gene="ilvI" /locus_tag="STM0116" /note="putative binding site for Lrp, RegulonDB: STMS1H000257" /bound_moiety="Lrp" gene 137550..138053 /gene="ilvH" /locus_tag="STM0117" /db_xref="GeneID:1251635" regulatory 137550..137555 /regulatory_class="ribosome_binding_site" /gene="ilvH" /locus_tag="STM0117" /note="putative RBS for ilvH; RegulonDB:STMS1H000497" CDS 137562..138053 /gene="ilvH" /locus_tag="STM0117" /EC_number="4.1.3.-" /note="acetolactate synthase isozyme III small subunit. (SW:ILVH_SALTY)" /codon_start=1 /transl_table=11 /product="acetolactate synthase small subunit" /protein_id="NP_459122.1" /db_xref="GI:16763507" /db_xref="GeneID:1251635" /translation="MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLS RMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGREEVK RNTEIFRGQIIDVTPTLYTVQLAGTSDKLDAFLASLRDVAKIVEVARSGVVGLSRGDK IMR" gene 138326..139341 /gene="fruR" /locus_tag="STM0118" /db_xref="GeneID:1251636" regulatory 138326..138331 /regulatory_class="ribosome_binding_site" /gene="fruR" /locus_tag="STM0118" /note="putative RBS for fruR; RegulonDB:STMS1H000498" CDS 138337..139341 /gene="fruR" /locus_tag="STM0118" /note="GlaR/LacI family; fructose repressor (catabolite repressor/activator). (SW:FRUR_SALTY)" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator FruR" /protein_id="NP_459123.1" /db_xref="GI:16763508" /db_xref="GeneID:1251636" /translation="MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVRE HNYHPNAVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQ PDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVV GADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVNFLYAN SYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDH ELLDFLQCPVLAVAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIRRNLYRRGILSRS " gene 139931..140405 /gene="yabB" /locus_tag="STM0119" /db_xref="GeneID:1251637" regulatory 139931..139936 /regulatory_class="ribosome_binding_site" /gene="yabB" /locus_tag="STM0119" /note="putative RBS for yabB; RegulonDB:STMS1H000499" CDS 139947..140405 /gene="yabB" /locus_tag="STM0119" /note="similar to E. coli orf, hypothetical protein (AAC73192.1); Blastp hit to AAC73192.1 (152 aa), 94% identity in aa 1 - 152" /codon_start=1 /transl_table=11 /product="cell division/cell wall cluster transcriptional repressor MraZ" /protein_id="NP_459124.1" /db_xref="GI:16763509" /db_xref="GeneID:1251637" /translation="MFRGATLVNLDSKGRLTVPTRYREQLIESATGQMVCTIDIHHPC LLLYPLPEWEIIEQKLSRLSSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHA GLTKEVMLVGQFNKFELWDETTWYQQVKEDIDAEQSATETLSERLQDLSL" gene 140388..141348 /gene="yabC" /locus_tag="STM0120" /db_xref="GeneID:1251638" regulatory 140388..140393 /regulatory_class="ribosome_binding_site" /gene="yabB" /locus_tag="STM0119" /note="putative RBS for yabC; RegulonDB:STMS1H000500" CDS 140407..141348 /gene="yabC" /locus_tag="STM0120" /note="similar to E. coli putative apolipoprotein (AAC73193.1); Blastp hit to AAC73193.1 (313 aa), 95% identity in aa 1 - 313" /codon_start=1 /transl_table=11 /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase" /protein_id="NP_459125.1" /db_xref="GI:16763510" /db_xref="GeneID:1251638" /translation="MMENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQ LGEEGRLLAIDRDPQAIAVAQTINDPRFSIIHGPFSALADYVAERELTGKIDGILLDL GVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERF AKRIARAIVERNREQPMTRTKELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEE IEQALKSSLSVLAPGGRLSIISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKL GGRELRALGKLMPGEKEVAENPRARSSVLRIAERTNA" gene 141333..141710 /gene="ftsL" /locus_tag="STM0121" /db_xref="GeneID:1251639" regulatory 141333..141338 /regulatory_class="ribosome_binding_site" /gene="ftsL" /locus_tag="STM0121" /note="putative RBS for ftsL; RegulonDB:STMS1H000501" CDS 141345..141710 /gene="ftsL" /locus_tag="STM0121" /note="ingrowth of wall at septum; similar to E. coli cell division protein; ingrowth of wall at septum (AAC73194.1); Blastp hit to AAC73194.1 (121 aa), 98% identity in aa 1 - 121" /codon_start=1 /transl_table=11 /product="cell division protein FtsL" /protein_id="NP_459126.1" /db_xref="GI:16763511" /db_xref="GeneID:1251639" /translation="MISRVTEALSKVKGSIGSNERHALPGVIGDDLLRFGKLPLCLFI CIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIAT EKLQMQHVDPSQENIVVQK" gene 141709..143492 /gene="ftsI" /locus_tag="STM0122" /db_xref="GeneID:1251640" regulatory 141709..141714 /regulatory_class="ribosome_binding_site" /gene="ftsI" /locus_tag="STM0122" /note="putative RBS for ftsI; RegulonDB:STMS1H000502" CDS 141726..143492 /gene="ftsI" /locus_tag="STM0122" /note="penicillin-binding protein 3; similar to E. coli septum formation; penicillin-binding protein 3; peptidoglycan synthetase (AAC73195.1); Blastp hit to AAC73195.1 (588 aa), 96% identity in aa 1 - 588" /codon_start=1 /transl_table=11 /product="peptidoglycan glycosyltransferase FtsI" /protein_id="NP_459127.1" /db_xref="GI:16763512" /db_xref="GeneID:1251640" /translation="MKAAAKTQKSKRQEEQTNFISWRFALLCGCILLALVFLLGRAAW LQIIAPDMLVRQGDMRSLRVQEVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAG GISVGDRWKALSTALNIPLDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIH LREESRRYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVI EDISSTDSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMA NSPSYNPNNLAGTPKDAMRNRTITDVFEPGSTVKPMVVMTALQRGIVNENTVLNTVPY RINGHEIKDVARYSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLG LVGERSGLYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVD PPVPGERIFPESTVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRYI NKYIAYTAGVAPASQPRFALVVVINDPQAGKYYGGAVSAPVFGAIMGGVLRTMNIEPD ALATGEKNEFVINQGEGTGGRS" gene 143469..144966 /gene="murE" /locus_tag="STM0123" /db_xref="GeneID:1251641" regulatory 143469..143474 /regulatory_class="ribosome_binding_site" /gene="murE" /locus_tag="STM0123" /note="putative RBS for murE; RegulonDB:STMS1H000503" CDS 143479..144966 /gene="murE" /locus_tag="STM0123" /EC_number="6.3.2.13" /note="similar to E. coli meso-diaminopimelate-adding enzyme (AAC73196.1); Blastp hit to AAC73196.1 (495 aa), 91% identity in aa 1 - 495" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase" /protein_id="NP_459128.1" /db_xref="GI:16763513" /db_xref="GeneID:1251641" /translation="MADRNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGH QADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFY HEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTG SAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDM AHYEAAKWMLYSTHHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKA EAVEYHDRGATIRFASSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAA RLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDK GKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTN AIMQAKDNDVVLIAGKGHEDYQIVGTQRLDYSDRVTAARLLGVIA" gene 144949..146321 /gene="murF" /locus_tag="STM0124" /db_xref="GeneID:1251642" regulatory 144949..144954 /regulatory_class="ribosome_binding_site" /gene="murF" /locus_tag="STM0124" /note="putative RBS for murF; RegulonDB:STMS1H000504" CDS 144963..146321 /gene="murF" /locus_tag="STM0124" /note="similar to E. coli D-alanine:D-alanine-adding enzyme (AAC73197.1); Blastp hit to AAC73197.1 (452 aa), 87% identity in aa 1 - 452" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase" /protein_id="NP_459129.1" /db_xref="GI:16763514" /db_xref="GeneID:1251642" /translation="MISVTLSKIADVLGAEHRGADLTLDTVITDTRKVTPGCLFVALK GERFDAHDFADKAKANGAGALLVSRPLDIDLPQVIVKDTRQAFGQLAAWVRMQVPARV VALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELG ANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMN ADNNDWLNWQSIIGDRLVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP LPGRHNIANALAAAALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYN ANVGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGK LSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEKG SC" gene 146301..147397 /gene="mraY" /locus_tag="STM0125" /db_xref="GeneID:1251643" regulatory 146301..146306 /regulatory_class="ribosome_binding_site" /gene="mraY" /locus_tag="STM0125" /note="putative RBS for mraY; RegulonDB:STMS1H000505" CDS 146315..147397 /gene="mraY" /locus_tag="STM0125" /EC_number="2.7.8.13" /note="similar to E. coli phospho-N-acetylmuramoyl-pentapeptide transferase? (AAC73198.1); Blastp hit to AAC73198.1 (360 aa), 97% identity in aa 1 - 360" /codon_start=1 /transl_table=11 /product="phospho-N-acetylmuramoyl-pentapeptide- transferase" /protein_id="NP_459130.1" /db_xref="GI:16763515" /db_xref="GeneID:1251643" /translation="MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRM IARLQKLSFGQVVRNDGPESHFSKRGTPTMGGIMILTSIVISVLLWAYPSNPYVWCVL VVLIGYGIIGFVDDYRKVVRKDTKGLIARWKYFWMSVIALGVAFALYLVGKDTPATQL VVPFFKDVMPQLGLFYILLSYFVIVGTGNAVNLTDGLDGLAIMPTVFVAAGFALVAWA TGNMNFANYLHIPYLRHAGELVIVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGA LGIIAVLLRQEFLLVIMGGVFVVETLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWP EPRVIVRFWIISLMLVLIGLATLKVR" gene 147386..148716 /gene="murD" /locus_tag="STM0126" /db_xref="GeneID:1251644" regulatory 147386..147391 /regulatory_class="ribosome_binding_site" /gene="mraY" /locus_tag="STM0125" /note="putative RBS for murD; RegulonDB:STMS1H000506" CDS 147400..148716 /gene="murD" /locus_tag="STM0126" /EC_number="6.3.2.9" /note="similar to E. coli UDP-N-acetylmuramoylalanine-D-glutamate ligase (AAC73199.1); Blastp hit to AAC73199.1 (438 aa), 92% identity in aa 1 - 438" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase" /protein_id="NP_459131.1" /db_xref="GI:16763516" /db_xref="GeneID:1251644" /translation="MADYQDKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRVTPPGL DKLPQEVERHVGGLNDEWLLAADLIVASPGIALAHPSLSAAASAGVEIVGDIELFCRE AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDADRELYVLELS SFQLETTSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYEKAKVCVVNADDALT MPVRGADERCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAA LALADAVGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKATNVGSTEAALNGL HVDGTLHLLLGGDGKSADFSPLTRYLTGDRIRLYCFGRDGAQLAALRPEIAQQTETME EAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGDVFTRLAKELG" gene 148702..149960 /gene="ftsW" /locus_tag="STM0127" /db_xref="GeneID:1251645" regulatory 148702..148707 /regulatory_class="ribosome_binding_site" /gene="ftsW" /locus_tag="STM0127" /note="putative RBS for ftsW; RegulonDB:STMS1H000507" CDS 148716..149960 /gene="ftsW" /locus_tag="STM0127" /note="stablilzes FtsZ ring; cytoplasmic membrane required for PBP2 expression; similar to E. coli cell division; membrane protein involved in shape determination (AAC73200.1); Blastp hit to AAC73200.1 (414 aa), 90% identity in aa 1 - 414" /codon_start=1 /transl_table=11 /product="cell division protein FtsW" /protein_id="NP_459132.1" /db_xref="GI:16763517" /db_xref="GeneID:1251645" /translation="MRLSLPRLRMPRVPGFGLLAWLFAALKGWVMASRDKDADSLIMY DRTLLWLTFGLAAIGFVMVTSASMPVGQRLANDPFLFAKRDALYIFLAFCLAMVTLRL PMTFWQKYSTTMLIASIIMLLIVLVVGSSVNGASRWIALGPLRIQPAEFTKLSLFCYL ANYLVRKVDEVRNNLRGFLKPMGVILVLAVLLLAQPDLGTVVVLFVTTLAMLFLAGAK LWQFIAIIGMGISAVILLILAEPYRIRRVTSFWNPWEDPFGSGYQLTQSLMAFGRGEI WGQGLGNSVQKLEYLPEAHTDFIFAIIGEELGYIGVVLALLMVFFVAFRAMSIGRKAL EIDHRFSGFLACSIGIWFSFQALVNVGAAAGMLPTKGLTLPLISYGGSSLLIMSTAIM FLLRIDYETRLEKAQAFTRGSR" gene 149947..151024 /gene="murG" /locus_tag="STM0128" /db_xref="GeneID:1251646" regulatory 149947..149952 /regulatory_class="ribosome_binding_site" /gene="murG" /locus_tag="STM0128" /note="putative RBS for murG; RegulonDB:STMS1H000508" CDS 149957..151024 /gene="murG" /locus_tag="STM0128" /EC_number="2.4.1.-" /note="similar to E. coli UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (AAC73201.1); Blastp hit to AAC73201.1 (355 aa), 92% identity in aa 1 - 354" /codon_start=1 /transl_table=11 /product="undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase" /protein_id="NP_459133.1" /db_xref="GI:16763518" /db_xref="GeneID:1251646" /translation="MSGQPKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADR MEADLVPKHGIDIDFIRISGLRGKGVKALLAAPLRIFNAWRQARAIMKRFKPDVVLGM GGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNQWLAKIATTVMQAFPGAFPNAEVVGN PVRTDVLALPLPQVRLAGRDGPIRVLVVGGSQGARVLNQTMPQVAARLGDTVTIWHQS GKGAQLTVEQAYAGAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPA IFVPFQHKDRQQYWNALPLENAGAAKIFEQPQFTVEAVADTLAGWSREALLTMAERAR AVSIPDATERVASEVSRVART" gene 151131..152618 /gene="murC" /locus_tag="STM0129" /db_xref="GeneID:1251647" regulatory 151131..151136 /regulatory_class="ribosome_binding_site" /gene="murC" /locus_tag="STM0129" /note="putative RBS for murC; RegulonDB:STMS1H000509" CDS 151143..152618 /gene="murC" /locus_tag="STM0129" /EC_number="6.3.2.8" /note="similar to E. coli L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase (AAC73202.1); Blastp hit to AAC73202.1 (491 aa), 94% identity in aa 1 - 490" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramate--L-alanine ligase" /protein_id="NP_459134.1" /db_xref="GI:16763519" /db_xref="GeneID:1251647" /translation="MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGY QISGSDLAPNPVTQQLTSLGATIFFNHRPENVRDASVVVVSSAISADNPEIVAAHEAR IPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAG VHARLGHSRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYHGDFENLKQTFINFL HNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLR QGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIADDAILRALESFQGTGRRFDFLGEF PLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYD DFANVLTQVDALLMLDVYPAGEAPIPGADSRSLCRTIRNRGKIDPILVSDPAQVATML APVLTGNDLILVQGAGNVGKIARYLSEIKLKPQIQEEEQHG" gene 152595..153531 /gene="ddlB" /locus_tag="STM0130" /db_xref="GeneID:1251648" regulatory 152595..152600 /regulatory_class="ribosome_binding_site" /gene="ddlB" /locus_tag="STM0130" /note="putative RBS for ddlB; RegulonDB:STMS1H000510" CDS 152611..153531 /gene="ddlB" /locus_tag="STM0130" /EC_number="6.3.2.4" /note="affects cell division; similar to E. coli D-alanine-D-alanine ligase B, affects cell division (AAC73203.1); Blastp hit to AAC73203.1 (306 aa), 90% identity in aa 1 - 306" /codon_start=1 /transl_table=11 /product="D-alanine--D-alanine ligase" /protein_id="NP_459135.1" /db_xref="GI:16763520" /db_xref="GeneID:1251648" /translation="MADKIAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQE VDVAQLKAMGFQKVFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL LWQGAGLPVAPWVALTRAEFEKGLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEE NALQGALSLAFQHDDEILIEKWLCGPEFTVAIVGEEILPSIRIQPAGTFYDYEAKYLS DETQYFCPAGLDASQEAALQSLVLQAWKALGCTGWGRIDVMLDSDGQFYLLEANTSPG MTSHSLVPMAARQAGMSFSQLVVRILELAD" gene 153375..154363 /gene="ftsQ" /locus_tag="STM0131" /db_xref="GeneID:1251649" regulatory 153375..153383 /regulatory_class="minus_35_signal" /gene="ddlB" /locus_tag="STM0130" /note="putative -35_signal for ftsQ; RegulonDB:STMLTH004481" regulatory 153401..153409 /regulatory_class="minus_10_signal" /gene="ddlB" /locus_tag="STM0130" /note="putative -10_signal for ftsQ; RegulonDB:STMLTH004481" regulatory 153514..153519 /regulatory_class="ribosome_binding_site" /gene="ddlB" /locus_tag="STM0130" /note="putative RBS for ftsQ; RegulonDB:STMS1H000511" CDS 153533..154363 /gene="ftsQ" /locus_tag="STM0131" /note="ingrowth of wall at septum; similar to E. coli cell division protein; ingrowth of wall at septum (AAC73204.1); Blastp hit to AAC73204.1 (276 aa), 93% identity in aa 1 - 276" /codon_start=1 /transl_table=11 /product="cell division protein FtsQ" /protein_id="NP_459136.1" /db_xref="GI:16763521" /db_xref="GeneID:1251649" /translation="MSQAALNTRNSDEETPSSRRNNGTRLAGILFLLTVLCTVFVSGW VVLGWMEDAQRLPLSKLVLTGERHYTRNDDIRQAILALGAPGTFMTQDVNIIQSQIER LPWIKQASVRKQWPDELKIHLVEYVPIARWNDQHMVDAEGNTFSVPSDRIGKQVLPML YGPEGSASEVLQGYREMGQVLAKDKFTLKEAAMTARRSWQLTLNNGIKLNLGRGDTMK RLARFVELYPVLQQQAQTDGKRISYVDLRYDSGAAVGWAPLPPEESNQQQNQAQAEQQ " gene 154346..155622 /gene="ftsA" /locus_tag="STM0132" /db_xref="GeneID:1251650" regulatory 154346..154351 /regulatory_class="ribosome_binding_site" /gene="ftsQ" /locus_tag="STM0131" /note="putative RBS for ftsA; RegulonDB:STMS1H000513" CDS 154360..155622 /gene="ftsA" /locus_tag="STM0132" /note="septation process protein; complexes with FtsZ; associated with junctions of inner and outer membranes; similar to E. coli ATP-binding cell division protein, septation process, complexes with FtsZ, associated with junctions of inner and outer membranes (AAC73205.1); Blastp hit to AAC73205.1 (420 aa), 99% identity in aa 1 - 420" /codon_start=1 /transl_table=11 /product="cell division protein FtsA" /protein_id="NP_459137.1" /db_xref="GI:16763522" /db_xref="GeneID:1251650" /translation="MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSR GMDKGGVNDLESVVKCVQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEE EVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHL ITCHNDMAKNIVKAVERCGLKVDQLIFAGLAASYSVLTEDERELGVCVVDIGGGTMDI AVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVE VPSVGGRPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVL TGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKESHLN GEAEVEKRVTASVGSWIKRLNSWLRKEF" gene 155670..156834 /gene="ftsZ" /locus_tag="STM0133" /db_xref="GeneID:1251651" regulatory 155670..155675 /regulatory_class="ribosome_binding_site" /gene="ftsZ" /locus_tag="STM0133" /note="putative RBS for ftsZ; RegulonDB:STMS1H000514" CDS 155683..156834 /gene="ftsZ" /locus_tag="STM0133" /note="forms circumferential ring in cell division; similar to E. coli cell division; forms circumferential ring; tubulin-like GTP-binding protein and GTPase (AAC73206.1); Blastp hit to AAC73206.1 (383 aa), 98% identity in aa 1 - 383" /codon_start=1 /transl_table=11 /product="cell division protein FtsZ" /protein_id="NP_459138.1" /db_xref="GI:16763523" /db_xref="GeneID:1251651" /translation="MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNT DAQALRKTAVGQTIQIGSGITKGLGAGANPEVGRNAADEDREALRAALEGADMVFIAA GMGGGTGTGAAPVVAEVAKDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSL ITIPNDKLLKVLGRGISLLDAFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMS EMGYAMMGSGVASGEDRAEEAAEMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFE TVGNTIRAFASDNATVVIGTSLDPDMNDELRVTVVATGIGMDKRPEITLVTNKQVQQP VLDRYQQHGMAPLTQEQKTVAKVVNDNTPQAAKEPDYLDIPAFLRKQAD" gene 156919..157852 /gene="lpxC" /locus_tag="STM0134" /db_xref="GeneID:1251652" regulatory 156919..156924 /regulatory_class="ribosome_binding_site" /gene="lpxC" /locus_tag="STM0134" /note="putative RBS for lpxC; RegulonDB:STMS1H000515" CDS 156935..157852 /gene="lpxC" /locus_tag="STM0134" /EC_number="3.5.1.-" /note="similar to E. coli UDP-3-O-acyl N-acetylglucosamine deacetylase; lipid A biosynthesis (AAC73207.1); Blastp hit to AAC73207.1 (305 aa), 98% identity in aa 1 - 305" /codon_start=1 /transl_table=11 /product="UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase" /protein_id="NP_459139.1" /db_xref="GI:16763524" /db_xref="GeneID:1251652" /translation="MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDL NPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIP IMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFRPYNGFTLDFTID FNHPAIDSSSQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVV DDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVL AKQEAWEFVTFQDDAELPLAFKAPSTVLA" gene 158199..158627 /gene="yacA" /locus_tag="STM0135" /db_xref="GeneID:1251653" CDS 158199..158627 /gene="yacA" /locus_tag="STM0135" /note="similar to E. coli orf, hypothetical protein (AAC73208.1); Blastp hit to AAC73208.1 (195 aa), 69% identity in aa 49 - 195" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459140.3" /db_xref="GI:1109557568" /db_xref="GeneID:1251653" /translation="MVAASFGLPALSNAAETNTPARTTASTASKVNFSHFALLEASNR RPNFTVDYWHQHAIRTVIRHLSFAMAPQTLPVADAPSPLQAHHIALLNTLSAMLTQEG TPPAIVRRLSLAYFAPQTAFSIPAWISQAQGIRAGPQRLS" gene 158689..161394 /gene="secA" /locus_tag="STM0136" /db_xref="GeneID:1251654" CDS 158689..161394 /gene="secA" /locus_tag="STM0136" /note="similar to E. coli preprotein translocase; secretion protein (AAC73209.1); Blastp hit to AAC73209.1 (901 aa), 95% identity in aa 1 - 900" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit SecA" /protein_id="NP_459141.1" /db_xref="GI:16763526" /db_xref="GeneID:1251654" /translation="MLIKLLTKVFGSRNDRTLRRMRKAVSLINAMEPEMEKLSDDELK AKTNEFRARIEKGESVESLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNDRCIAEM RTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGMSVGINLPG MPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDE ARTPLIISGPAEDSSEMYKKVNKIIPHLIRQEKEDSDTFQGEGHFSVDEKARQVNLTE RGLVLIEELLVQEGIMDEGESLYSPGNIMLMHHVTAALRAHALFTRDVDYIVKDGEVI IVDEHTGRTMQGRRWSDGLHQAVEAKEGVEIQNENQTLASITFQNYFRLYEKLAGMTG TADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTANGQ PVLVGTISIEKSEVVSRELTKAGIKHNVLNAKFHANEAGIVAQAGYPAAVTIATNMAG RGTDIMLGGSWQAEVAALEAPTEEQIAQIKADWQVRHDAVLAAGGLHIIGTERHESRR IDNQLRGRSGRQGDPGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVT KAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYTQRNELLDVSDVSDTINSIRED VFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLEMPIAEWLDKEPELHEETLRERIL AQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKD PKQEYKRESFAMFAAMLESLKYEVISTLSKVQVRMPEEVEAMEMQRREEAERLAQMQQ LSHQDDDAAVAADLAAQTGERKIGRNDPCPCGSGKKYKQCHGRLS" gene 161532..161941 /gene="mutT" /locus_tag="STM0137" /db_xref="GeneID:1251655" regulatory 161532..161537 /regulatory_class="ribosome_binding_site" /gene="mutT" /locus_tag="STM0137" /note="putative RBS for mutT; RegulonDB:STMS1H000516" CDS 161546..161941 /gene="mutT" /locus_tag="STM0137" /EC_number="3.6.1.-" /note="prefers dGTP; similar to E. coli 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP, causes AT-GC transversions (AAC73210.1); Blastp hit to AAC73210.1 (129 aa), 80% identity in aa 1 - 128" /codon_start=1 /transl_table=11 /product="8-oxo-dGTP diphosphatase" /protein_id="NP_459142.1" /db_xref="GI:16763527" /db_xref="GeneID:1251655" /translation="MKKLQIAVGIIRNPNDEIFITQRAADAHMANKLEFPGGKIEAGE TPEQALIRELQEEVGITPTQVTLFDTLEYQFPDRHITLWFWLVERWEGEPWGKEGQPG RWIAQNALSTDDFPPANEPIIRKLRQFAL" gene complement(162263..162465) /gene="yacG" /locus_tag="STM0138" /db_xref="GeneID:1251656" CDS complement(162263..162454) /gene="yacG" /locus_tag="STM0138" /note="similar to E. coli orf, hypothetical protein (AAC73212.1); Blastp hit to AAC73212.1 (65 aa), 87% identity in aa 1 - 62" /codon_start=1 /transl_table=11 /product="DNA gyrase inhibitor YacG" /protein_id="NP_459143.1" /db_xref="GI:16763528" /db_xref="GeneID:1251656" /translation="MSDVTVVNCPTCGKPVVWGEISPFRPFCSKRCQLIDLGEWAAEE KRIASSGDQSDSDDWSEER" regulatory complement(162460..162465) /regulatory_class="ribosome_binding_site" /gene="yacG" /locus_tag="STM0138" /note="putative RBS for yacG; RegulonDB:STMS1H000517" gene complement(162464..163221) /gene="yacF" /locus_tag="STM0139" /db_xref="GeneID:1251657" CDS complement(162464..163207) /gene="yacF" /locus_tag="STM0139" /note="similar to E. coli orf, hypothetical protein (AAC73213.1); Blastp hit to AAC73213.1 (247 aa), 89% identity in aa 1 - 247" /codon_start=1 /transl_table=11 /product="cell division protein ZapD" /protein_id="NP_459144.1" /db_xref="GI:16763529" /db_xref="GeneID:1251657" /translation="MHTQVLFEHPLNEKMRTWLRIEFLIQQLSINLPIADHAGALHFF RNISDLLDVFERGEVRTELLKELERQQRKLQAWVEVPGVDQDRIEALRQQLKSAGSVL ISAPRIGQQLREDRLIALVRQRLSIPGGCCSFDLPTLHIWLHLQQAQRDAQIESWLAS LNPLTQALTLVLDLIRNSAPFRKQTSLNGFYQDNGDDADLLRLMLTLDSQLYPQISGH KSRFAIRFMPLDSENGLVPERLDFELACC" gene complement(163207..163835) /gene="yacE" /locus_tag="STM0140" /db_xref="GeneID:1251658" CDS complement(163207..163827) /gene="yacE" /locus_tag="STM0140" /note="similar to E. coli putative DNA repair protein (AAC73214.1); Blastp hit to AAC73214.1 (206 aa), 88% identity in aa 1 - 206" /codon_start=1 /transl_table=11 /product="dephospho-CoA kinase" /protein_id="NP_459145.1" /db_xref="GI:16763530" /db_xref="GeneID:1251658" /translation="MRYTVALTGGIGSGKSTVADAFADLGITVIDADIIARQMVEPGQ PALNAIAEHFGSELIAADGTLRRRALRERIFSHPEEKAWLNALLHPLIQQETQRQFQQ ATSPYVLWVVPLLVENRLYQKANRVLVVDVTPETQLIRTMQRDDVTREHVEHILAAQA TREARLAVADDVIDNNGAPDAIASDVARLHASYLKLASQFVSQEKP" regulatory complement(163216..163221) /regulatory_class="ribosome_binding_site" /gene="yacE" /locus_tag="STM0140" /note="putative RBS for yacF; RegulonDB:STMS1H000518" regulatory complement(163830..163835) /regulatory_class="ribosome_binding_site" /gene="yacE" /locus_tag="STM0140" /note="putative RBS for yacE; RegulonDB:STMS1H000519" gene 164040..165096 /gene="guaC" /locus_tag="STM0141" /db_xref="GeneID:1251659" regulatory 164040..164045 /regulatory_class="ribosome_binding_site" /gene="guaC" /locus_tag="STM0141" /note="putative RBS for guaC; RegulonDB:STMS1H000520" CDS 164053..165096 /gene="guaC" /locus_tag="STM0141" /EC_number="1.7.1.7" /note="similar to E. coli GMP reductase (AAC73215.1); Blastp hit to AAC73215.1 (347 aa), 95% identity in aa 1 - 347" /codon_start=1 /transl_table=11 /product="GMP reductase" /protein_id="NP_459146.1" /db_xref="GI:16763531" /db_xref="GeneID:1251659" /translation="MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQTW SGVPIIAANMDTVGTFEMAQALAGFDILTAVHKHYTVEEWAAFINTASADVLKHVMVS TGTSDADFEKTVQILALNPALNFVCIDVANGYSEHFVQFVAKAREAWPTKTICAGNVV TGEMCEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIVS DGGCTMPGDVAKAFGGGADFVMLGGMLAGHEESGGSVVEENGEKFMLFYGMSSESAMN RHVGGVAKYRAAEGKTVKLPLRGPVGNTARDILGGLRSACTYVGASRLKELTKRTTFI RVQEQENRIFNSL" gene complement(165127..166342) /gene="hofC" /locus_tag="STM0142" /db_xref="GeneID:1251660" CDS complement(165127..166329) /gene="hofC" /locus_tag="STM0142" /note="similar to E. coli putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake (AAC73217.1); Blastp hit to AAC73217.1 (400 aa), 67% identity in aa 1 - 400" /codon_start=1 /transl_table=11 /product="type IV pilin biogenesis protein" /protein_id="NP_459147.1" /db_xref="GI:16763532" /db_xref="GeneID:1251660" /translation="MSVKQLWRWQGVNDKGQLEQDVVWADNRLALIITLQHQRIMPLR IKRMGVNAALWKEEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAH ELEQGVPFSSALVSWPQVFPPLYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVK KALRYPAIILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGW LILFLTMLVAIAHRRVKQKPSWQAQRQRLLLRLPVMGRLIRGQKLAQIFTVLALTQSA GIPFLQGLESAIDSLGCPYWSQRLTQVHQEIAAGNPVWLALKNTQEFSPLCLQLVRTG EASGSLDIMLHNLARHHSETTLALADNLASLLEPALLIITGLIIGTLVVAMYLPIFHL GDAMSGMG" gene complement(166319..167715) /gene="hofB" /locus_tag="STM0143" /db_xref="GeneID:1251661" CDS complement(166319..167704) /gene="hofB" /locus_tag="STM0143" /note="involved in biogenesis of fimbriae (type IV pilin), protein transport, DNA uptake; similar to E. coli putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake (AAC73218.1); Blastp hit to AAC73218.1 (461 aa), 69% identity in aa 1 - 459" /codon_start=1 /transl_table=11 /product="type II secretion system protein GspE" /protein_id="NP_459148.1" /db_xref="GI:16763533" /db_xref="GeneID:1251661" /translation="MKDAQLNTLCQRHQAVLINSASNSITVAVVDAPSHALLDALHFA TQKQIDIVCWTRQQMENHRHKPDQAPSANAAKGGETAAQLLNQTLRSAMAKRASDIHL EPGASRYRIRLRIDGVLHILQDIAKETGLALTARLKVLGNLDIAEHRLPQDGQFTVDL AGDSISFRIATLPCKEGEKVVLRLLHQVEQTLDLDTLGMYGAQLTAFRQALQQPQGLV LVTGPTGSGKTVTLYSALQTRNTPGINLCSVEDPIEIPLDGINQTQIHPRAGLTFQNV LRALLRQDPDIIMVGEIRDGDTAEIAIKAAQTGHLVLSTLHTNSTSETLIRLQQMGVA RWMISSALTLVVAQRLVRKLCPHCKQRLSDPVVLSPNLWPSAIPRWQASGCQHCYHGF YGRTALFEVLTVTPALRQLIASGASAQALEAHLQQTGTGTLFENGCRAVEQGMTSFEE ILCVLGMPHER" regulatory complement(166337..166342) /regulatory_class="ribosome_binding_site" /gene="hofC" /locus_tag="STM0142" /note="putative RBS for hofC; RegulonDB:STMS1H000521" regulatory complement(167710..167715) /regulatory_class="ribosome_binding_site" /gene="hofB" /locus_tag="STM0143" /note="putative RBS for hofB; RegulonDB:STMS1H000522" gene complement(167714..168163) /gene="ppdD" /locus_tag="STM0144" /db_xref="GeneID:1251662" CDS complement(167714..168151) /gene="ppdD" /locus_tag="STM0144" /note="putative major component of type IV pilin; similar to E. coli prelipin peptidase dependent protein (AAC73219.1); Blastp hit to AAC73219.1 (146 aa), 89% identity in aa 1 - 146" /codon_start=1 /transl_table=11 /product="prepilin peptidase-dependent pilin" /protein_id="NP_459149.1" /db_xref="GI:16763534" /db_xref="GeneID:1251662" /translation="MEKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQ TFVPYRTAVELCALEHGGTSTCDAGVNGIPSPVITRYVSGMSVEKGVITLTGQESLSG LSVIMTPAWDNANGITGWTRNCNIQSDSALQQACEDVFRFDAN" regulatory complement(168158..168163) /regulatory_class="ribosome_binding_site" /gene="ppdD" /locus_tag="STM0144" /note="putative RBS for ppdD; RegulonDB:STMS1H000523" gene complement(168373..169279) /gene="nadC" /locus_tag="STM0145" /db_xref="GeneID:1251663" CDS complement(168373..169266) /gene="nadC" /locus_tag="STM0145" /EC_number="2.4.2.19" /note="nicotinate-nucleotide pyrophosphorylase [carboxylating]. (SW:NADC_SALTY)" /codon_start=1 /transl_table=11 /product="nicotinate-nucleotide diphosphorylase" /protein_id="NP_459150.1" /db_xref="GI:16763535" /db_xref="GeneID:1251663" /translation="MPPRRYNPDDRRDALLERINLDIPAAVAQALREDLGGEVDAGND ITAQLLPADTQAHATVITREDGVFCGKRWVEEVFIQLAGDDVRLTWHVDDGDAIHANQ TVFELNGPARVLLTGERTALNFVQTLSGVASEVRRYVGLLAGTQTQLLDTRKTLPGLR TALKYAVLCGGGANHRLGLTDAFLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVEN LDELDDALKAGADIIMLDNFNTDQMREAVKRVNGQARLEVSGNVTAETLREFAETGVD FISVGALTKHVRALDLSMRFC" regulatory complement(169274..169279) /regulatory_class="ribosome_binding_site" /gene="nadC" /locus_tag="STM0145" /note="putative RBS for nadC; RegulonDB:STMS1H000524" gene 169341..169917 /gene="ampD" /locus_tag="STM0146" /db_xref="GeneID:1251664" regulatory 169341..169346 /regulatory_class="ribosome_binding_site" /gene="ampD" /locus_tag="STM0146" /note="putative RBS for ampD; RegulonDB:STMS1H000525" CDS 169354..169917 /gene="ampD" /locus_tag="STM0146" /note="AMPD protein. (SW:AMPD_SALTY)" /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-L-alanine amidase" /protein_id="NP_459151.1" /db_xref="GI:16763536" /db_xref="GeneID:1251664" /translation="MLPDKGWLVEARRVPSPHYDCRPDDEKPSLLVVHNISLPPGEFG GPWIDALFTGTIDPDAHPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSNY QGRERCNDFSIGIELEGTDTLAYTDAQYQQLAAVTRTLIASYPAIADNMTGHCNITPD RKTDPGPAFDWPRFRALVALSSHKEMT" gene 169903..170768 /gene="ampE" /locus_tag="STM0147" /db_xref="GeneID:1251665" regulatory 169903..169908 /regulatory_class="ribosome_binding_site" /gene="ampD" /locus_tag="STM0146" /note="putative RBS for ampE; RegulonDB:STMS1H000526" CDS 169914..170768 /gene="ampE" /locus_tag="STM0147" /note="similar to E. coli regulates ampC (AAC73222.1); Blastp hit to AAC73222.1 (284 aa), 84% identity in aa 1 - 284" /codon_start=1 /transl_table=11 /product="regulatory signaling modulator protein AmpE" /protein_id="NP_459152.1" /db_xref="GI:16763537" /db_xref="GeneID:1251665" /translation="MTLFTTLLVLIVERLFKLGEHWQLDHRLEALFRRITHFSMLRTM GMTAIAMVVTFLLLQALKGLLFNVPTLVVWILLGVLCIGAGKVRVHYHAWLKAASRND PHPCEAMASELTLIHGVPPDCNEREFLRELQNALLWINFRFYLAPLFWFIVGGPWGPV TLVGYAFLRAWQTWLARYQTPHQRLQSGIDAILHVLDWIPVRLAGVVYALLGHGEKAL PAWFASLADLHTSQYQVLTRLAQFSLAREPHTDKVETPKAAVSMAKKASFVVVVIIAL LTIYGALV" gene complement(170860..171822) /locus_tag="STM0148" /db_xref="GeneID:1251666" CDS complement(170860..171810) /locus_tag="STM0148" /note="hypothetical protein (gi|7688348)" /codon_start=1 /transl_table=11 /product="alpha-N-arabinofuranosidase" /protein_id="NP_459153.1" /db_xref="GI:16763538" /db_xref="GeneID:1251666" /translation="MANWPNPFIEQRADPFILRDGSDYYFIASVPEYDRLEIRRANSL EGLRAADPVVVWRKPESGPMSQLIWAPEMHRINGKWYIYFAATHTQALDKLGMFQHRM FALECADADPLTGKWTEKGQIKTPFDTFALDATTFYHQGKQWYLWAQKAPDIAGNSNI YLAELENPWTIKGEPVRLSKPEYDWECRGFWVNEGPAVVVHGDKLFISYSASATDENY CMGLLWINVNDDPRDPANWHKSPRPVFTTSYENRQYGPGHNSFTQTPEGENVLVYHAR NYTEIEGDPLYDPNRHTRLKRVRWDENGMPDFGVPPADTI" gene complement(171810..173227) /locus_tag="STM0149" /db_xref="GeneID:1251667" CDS complement(171810..173216) /locus_tag="STM0149" /note="hypothetical protein (gi|7688349)" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_459154.1" /db_xref="GI:16763539" /db_xref="GeneID:1251667" /translation="MDKGRLSVREKIGYGMGDAGCNIIFGAIMLFVNYFYTDIFGLAP ALVGVLLLSVRVIDAVTDPVMGALADRTQSKYGRFRPWLLWIAFPYALFSVLMFTTPD WGYNSKVVYAFVTYFLLSVTYTAINIPYCSLGGVITNDPKERVACQAYRFVLVGIATL LLSLTLLPMVDWFGGGDKAKGYQLAMTVLAIIGMGMFLFCFASVRERVRPAVPTHDDM KNDFKDVWKNDQWVRILLLTLCNVCPGFIRMAATMYYVTWVMGQSTHFATLFISLGVV GMMIGSMLAKVLTDRWCKLKVFFWTNIALAIFSCAFYFFDPKATVMIVALYFLLNILH QIPSPLHWSLMADVDDYGEWKTGKRITGISFSGNLFFLKLGLAIAGAMVGFLLSWYGY DASAKAQSASAMNGIMLLFTVIPGVGYLITAGVVRLLKVDRELMKKIQDDLEKRRTNY RELSELQELNAAESVRKA" regulatory complement(171817..171822) /regulatory_class="ribosome_binding_site" /locus_tag="STM0148" /note="putative RBS for STM0148; RegulonDB:STMS1H000527" regulatory complement(173222..173227) /regulatory_class="ribosome_binding_site" /locus_tag="STM0149" /note="putative RBS for STM0149; RegulonDB:STMS1H000528" gene complement(173380..174812) /gene="aroP" /locus_tag="STM0150" /db_xref="GeneID:1251668" CDS complement(173380..174753) /gene="aroP" /locus_tag="STM0150" /note="similar to E. coli aromatic amino acid transport protein (AAC73223.1); Blastp hit to AAC73223.1 (457 aa), 92% identity in aa 1 - 457" /codon_start=1 /transl_table=11 /product="APC family aromatic amino acid transporter" /protein_id="NP_459155.1" /db_xref="GI:16763540" /db_xref="GeneID:1251668" /translation="MMDSQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSA GPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGGFAGFASGWNYWVL YVLVAMAELTAVGKYIQFWYPEIPTWASAAAFFVIINAINLTNVKVFGEMEFWFAIIK VIAVIAMILFGAWLLFSDTAGPQATVRNLWEQGGFLPHGWTGLVMMMAIIMFSFGGLE LVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLLPWTRVTADTSPFVLIF HELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALLNVDKRGVPV SSILVSAVVTALCVLLNYLAPESAFGLLMALVVSALVINWAMISLAHMMFRRAKQQQG VKTRFPALFYPFGNVLCLLFMAAVLIIMLMTPGMAISVWLIPVWLLILGVGYLCKEKT AKTVKAH" regulatory complement(174756..174761) /regulatory_class="ribosome_binding_site" /gene="aroP" /locus_tag="STM0150" /note="putative RBS for aroP; RegulonDB:STMS1H000529" regulatory complement(174788..174796) /regulatory_class="minus_10_signal" /gene="aroP" /locus_tag="STM0150" /note="putative -10_signal for aroP; RegulonDB:STMLTH004492" regulatory complement(174804..174812) /regulatory_class="minus_35_signal" /gene="aroP" /locus_tag="STM0150" /note="putative -35_signal for aroP; RegulonDB:STMLTH004492" protein_bind complement(174816..174838) /note="putative binding site for TyrR, RegulonDB: STMS1H000391" /bound_moiety="TyrR" protein_bind complement(174838..174862) /note="putative binding site for TyrR, RegulonDB: STMS1H000393" /bound_moiety="TyrR" gene 175153..176080 /gene="pdhR" /locus_tag="STM0151" /db_xref="GeneID:1251669" regulatory 175153..175161 /regulatory_class="minus_35_signal" /gene="pdhR" /locus_tag="STM0151" /note="putative -35_signal for pdhR; RegulonDB:STMLTH004493" regulatory 175180..175188 /regulatory_class="minus_10_signal" /gene="pdhR" /locus_tag="STM0151" /note="putative -10_signal for pdhR; RegulonDB:STMLTH004493" protein_bind 175264..175286 /gene="pdhR" /locus_tag="STM0151" /note="putative binding site for PdhR, RegulonDB: STMS1H000337" /bound_moiety="PdhR" regulatory 175307..175312 /regulatory_class="ribosome_binding_site" /gene="pdhR" /locus_tag="STM0151" /note="putative RBS for pdhR; RegulonDB:STMS1H000530" CDS 175316..176080 /gene="pdhR" /locus_tag="STM0151" /note="similar to E. coli transcriptional regulator for pyruvate dehydrogenase complex (AAC73224.1); Blastp hit to AAC73224.1 (254 aa), 96% identity in aa 1 - 254" /codon_start=1 /transl_table=11 /product="transcriptional regulator PdhR" /protein_id="NP_459156.1" /db_xref="GI:16763541" /db_xref="GeneID:1251669" /translation="MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQF DVSRPSLREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQFDLLE TRHALEGIAAYYAALRSTDEDKDRIRELHHAIELAQESGDLDAESEAVLQYQIAVTEA AHNVVLLHLLRCMEPMLAQNVRQNFELLYARREMLPLVSTHRTRIFEAIMAGKPEEAR EASHRHLAFIEEIMLDRSREESRRERALRRLEQRKN" gene 176227..178903 /gene="aceE" /locus_tag="STM0152" /db_xref="GeneID:1251670" regulatory 176227..176232 /regulatory_class="ribosome_binding_site" /gene="aceE" /locus_tag="STM0152" /note="putative RBS for aceE; RegulonDB:STMS1H000531" CDS 176240..178903 /gene="aceE" /locus_tag="STM0152" /EC_number="1.2.4.1" /note="similar to E. coli pyruvate dehydrogenase (decarboxylase component) (AAC73225.1); Blastp hit to AAC73225.1 (887 aa), 96% identity in aa 1 - 887" /codon_start=1 /transl_table=11 /product="pyruvate dehydrogenase (acetyl-transferring), homodimeric type" /protein_id="NP_459157.1" /db_xref="GI:16763542" /db_xref="GeneID:1251670" /translation="MSERFQNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLSEA RKGGVKVAAGAGASNYINTIAVEDEPEYPGNLELERRIRSAIRWNAIMTVLRASKKDL ELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGIYARAFLEGRLTQ EQMDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLK DTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIV NELEGIFAGAGWNVIKVMWGGRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYV REHFFGKYPETAALVADWTDEQIWALNRGGHDPKKVYAALKKAQETKGKATVILAHTI KGYGMGDTAEGKNIAHQVKKMNMDGVRYVRDRFNVPVADADLEKLPYITFPEGSEEHK YLHERRQALHGYLPSRQPNFTEKLELPQLSDFGALLEEQSKEISTTIAFVRALNVMLK NKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQIL QEGINELGAGASWLAAATSYSTNDLPMIPFYIYYSMFGFQRIGDLCWQAGDQQARGFL IGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEK QENVYYYITTLNENYHMPAMPAGAEEGIRKGIYKLETLEGSKGKVQLLGSGSILRHVR EAAQILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMNDAPA VASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGE LAKRGEIDKKVVADAITKFNIDADKVNPRLA" gene 178904..180807 /gene="aceF" /locus_tag="STM0153" /db_xref="GeneID:1251671" regulatory 178904..178909 /regulatory_class="ribosome_binding_site" /gene="aceF" /locus_tag="STM0153" /note="putative RBS for aceF; RegulonDB:STMS1H000532" CDS 178918..180807 /gene="aceF" /locus_tag="STM0153" /EC_number="2.3.1.12" /note="dihydrolipoyltransacetylase component; similar to E. coli pyruvate dehydrogenase (dihydrolipoyltransacetylase component) (AAC73226.1); Blastp hit to AAC73226.1 (630 aa), 93% identity in aa 1 - 630" /codon_start=1 /transl_table=11 /product="pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase" /protein_id="NP_459158.2" /db_xref="GI:1109557569" /db_xref="GeneID:1251671" /translation="MAIEIKVPDIGTDEVEITEILVKVGDKVEAEQSLITVEGDKASM EVPSPQAGVVKEIKVSVGDKTETGALIMIFDSAEGAADAAPAKAEEKKEAAPAAAPAA AAAKDVHVPDIGSDEVEVTEVMVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEI KVNTGDKVSTGSLIMVFEVAGEAGAAAPAKAEAAPAAAAPAAATGVKDVNVPDIGGDE VEVTEVMVKVGDKVTAEQSLITVEGDKASMEVPAPFAGTVKEIKISTGDKVKTGSLIM VFEVEGAAPAAAPAKQEAAAPAPAAKAEKPAAPAAKAEGKSEFAENDAYVHATPLIRR LAREFGVNLAKVKGTGRKGRILREDVQAYVKDAIKRAEAAPAAAGGGIPGMLPWPKVD FSKFGEVEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITDLEAFRKQQNAEAEKR KLDVKYTPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYINIGVAVDTPNGLVVP VFKDVNKKSVTELSRELTTISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVNA PEVAILGVSKSAMEPVWNGKEFVPRLMMPISLSFDHRVIDGADGARFITIINNMLSDI RRLVM" protein_bind 180798..180814 /note="putative binding site for FIS, RegulonDB: STMS1H000144" /bound_moiety="FIS" gene 180898..182431 /gene="lpdA" /locus_tag="STM0154" /db_xref="GeneID:1251672" regulatory 180898..180906 /regulatory_class="minus_35_signal" /gene="lpdA" /locus_tag="STM0154" /note="putative -35_signal for lpdA; RegulonDB:STMLTH004495" regulatory 180922..180930 /regulatory_class="minus_10_signal" /gene="lpdA" /locus_tag="STM0154" /note="putative -10_signal for lpdA; RegulonDB:STMLTH004495" regulatory 180998..181003 /regulatory_class="ribosome_binding_site" /gene="lpdA" /locus_tag="STM0154" /note="putative RBS for lpdA; RegulonDB:STMS1H000533" CDS 181007..182431 /gene="lpdA" /locus_tag="STM0154" /EC_number="1.8.1.4" /note="component of 2-oxodehydrogenase and pyruvate complexes; L protein of glycine cleavage complex second part; similar to E. coli lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex (AAC73227.1); Blastp hit to AAC73227.1 (474 aa), 98% identity in aa 1 - 474" /codon_start=1 /transl_table=11 /product="dihydrolipoyl dehydrogenase" /protein_id="NP_459159.1" /db_xref="GI:16763544" /db_xref="GeneID:1251672" /translation="MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGV CLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVITQLTGGLA GMAKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDP RVWDSTDALELKEVPKRMLVMGGGIIGLEMGTVYHALGSEIDVVEMFDQVIPAADKDI VKVFTKRISKKFNLMLETKVTAVEAKEDGIYVSMEGKKAPAEAQRYDAVLVAIGRVPN GKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEV IAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDC ADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE SVGLAAEVFEGSITDLPNPKAKKK" gene 182714..183004 /locus_tag="STM0155" /db_xref="GeneID:1251673" regulatory 182714..182719 /regulatory_class="ribosome_binding_site" /locus_tag="STM0155" /note="putative RBS for STM0155; RegulonDB:STMS1H000534" CDS 182720..183004 /locus_tag="STM0155" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459160.1" /db_xref="GI:16763545" /db_xref="GeneID:1251673" /translation="MKLFLTTAALTATLISGMAFASDPVIPWATNSGGTESTHIAAMG EDLNAQHQQITHTHEGVWAANSGSIQADEAALTSNKPPVQGHPELMPHQG" gene complement(183042..183840) /locus_tag="STM0156" /db_xref="GeneID:1251674" CDS complement(183042..183833) /locus_tag="STM0156" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459161.1" /db_xref="GI:16763546" /db_xref="GeneID:1251674" /translation="MKKVMLSALLLSLPLLGYAQERFPSPEAAASAFAAAVAGKNETQ LTALLGDDWRQFLPPEGADPEAVARFNRDWREGHRIVQKDNTAHLNVGREDWQLPVPM VKETGGWRFDMAAAGNEILTRTIGRNELSTLQAMHAYVDAQQDYYLQNHRWAHRIISS EGQKDGLYWPTKAGDVPSPLGPNFSPAAPDEGYHGYHFRIISDNDGHGAALLAWPMHY GETGVMSFMVNQDDRIYQADLGKETESKVQAITRFAPDAQWQVAE" regulatory complement(183835..183840) /regulatory_class="ribosome_binding_site" /locus_tag="STM0156" /note="putative RBS for STM0156; RegulonDB:STMS1H000535" gene complement(183846..185488) /gene="yacH" /locus_tag="STM0157" /db_xref="GeneID:1251675" CDS complement(183846..185468) /gene="yacH" /locus_tag="STM0157" /note="similar to E. coli putative membrane protein (AAC73228.1); Blastp hit to AAC73228.1 (617 aa), 29% identity in aa 3 - 523" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459162.2" /db_xref="GI:1109557570" /db_xref="GeneID:1251675" /translation="MTLPFKPHLIALVCSAGLFAASGVLYVKSRAPEAPAQAAAPASE PTQTAVPAPVAKTTFTTAQIDQWVAPVALYPDALLSQVLMASTYPANVVQAVQWSRDN PTLQGDAAIQAVASQPWDPSVKSLVAFPQLMALMGENPQWVQNLGDAFLAQPQDVMDA VQRLRLLAQQTGSLKSTPQQTVTSVPKSSASTAVTTTTTTSASTPATPSTVIKIEPAN PQVVYVPNYNPATVYGAWPNTAYPPVYLPPPPGQQFADSFVKGFGYSLGVATTYALFS SIDWDDDDHHHHDDDHHDDDYHHGGNGYQHNGDNININVNNFNRISGQNLPGQTMGWQ HNPAWRNGVPYPNNTVAQRFHPTNVSGGLSATQQAPVSRDSQRQAAMTQFQQRSHTAN ASLPAPGTRDAQRKAASQQLNQIAQRNNYRGYDGTQNSSRREAAQQTLNKSTTQQHRS ELKAKAQQHPVSQQQRDTARQRIESSTPQQRQAFRQNMHANVFSGNDSRSPSWQSQQL RGLESRRGSHLNTEQRAAAREHFSEHHEFHRR" regulatory complement(185483..185488) /regulatory_class="ribosome_binding_site" /gene="yacH" /locus_tag="STM0157" /note="putative RBS for yacH; RegulonDB:STMS1H000536" gene 185843..188454 /gene="acnB" /locus_tag="STM0158" /db_xref="GeneID:1251676" regulatory 185843..185848 /regulatory_class="ribosome_binding_site" /gene="acnB" /locus_tag="STM0158" /note="putative RBS for acnB; RegulonDB:STMS1H000537" CDS 185857..188454 /gene="acnB" /locus_tag="STM0158" /EC_number="4.2.1.3" /note="similar to E. coli aconitate hydrase B (AAC73229.1); Blastp hit to AAC73229.1 (865 aa), 96% identity in aa 1 - 865" /codon_start=1 /transl_table=11 /product="bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase" /protein_id="NP_459163.1" /db_xref="GI:16763548" /db_xref="GeneID:1251676" /translation="MLEEYRKHVAERAAQGIVPKPLDATQMAALVELLKTPPVGEEEF LLDLLINRVPPGVDEAAYVKAGFLAAVAKGDTTSPLVSPEKAIELLGTMQGGYNIHPL IDALDDAKLAPIAAKALSHTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLSRP PLAEKITVTVFKVTGETNTDDLSPAPDAWSRPDIPLHAQAMLKNAREGIEPDQPGVVG PIKQIEALQKKGYPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRGGGLCLGG KIAPIFFNTMEDAGALPIEVDVSNLNMGDVIDVYPYKGEVRNHETGELLATFELKTDV LIDEVRAGGRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESSRGFSLAQKMVGRA CGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPK PVDVTTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISF PAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVE KKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIVEYLTSNI VLLKWMIAEGYGDRRTLERRIQGMEKWLADPQLLEADADAEYAAVIDIDLADIKEPIL CAPNDPDDARLLSDVQGEKIDEVFIGSCMTNIGHFRAAGKLLDNHKGQLPTRLWVAPP TRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLG TGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDTYRYLNFDQLSQYTEKA DGVIFQTAV" gene complement(188515..189363) /locus_tag="STM0159" /db_xref="GeneID:1251677" CDS complement(188515..189357) /locus_tag="STM0159" /codon_start=1 /transl_table=11 /product="putative restriction endonuclease" /protein_id="NP_459164.1" /db_xref="GI:16763549" /db_xref="GeneID:1251677" /translation="MGTLKLIQYPSQLLSLTISDIINKQNLSQLIQKSKKDDSENWEG KDWIIKNTPQQGINWIGEHPNIKAVIIKTKDGSYADDGWKNNEKTIYSYSFKAAKGII NFNDSANRVLINQPISNYPILLFTDSSNKWEFQGCFKIIDILEKAVILEKMISFPSLN DKNSDNDDVILYKNEHTEGKIKYITHMLSERNRKIIDEIKDNSQWVCDICEIKFLDKY GKNYIEAHHKIPIHTFTGEHRILKTDFALLCPNCHKAVHIYLREENLQYEEAKIKIRN ILKR" regulatory complement(189358..189363) /regulatory_class="ribosome_binding_site" /locus_tag="STM0159" /note="putative RBS for STM0159; RegulonDB:STMS1H000538" gene 189591..189965 /gene="yacL" /locus_tag="STM0160" /db_xref="GeneID:1251678" regulatory 189591..189596 /regulatory_class="ribosome_binding_site" /gene="yacL" /locus_tag="STM0160" /note="putative RBS for yacL; RegulonDB:STMS1H000539" CDS 189603..189965 /gene="yacL" /locus_tag="STM0160" /note="similar to E. coli orf, hypothetical protein (AAC73230.1); Blastp hit to AAC73230.1 (136 aa), 85% identity in aa 17 - 135" /codon_start=1 /transl_table=11 /product="UPF0231 family protein" /protein_id="NP_459165.1" /db_xref="GI:16763550" /db_xref="GeneID:1251678" /translation="MDYEFLRDVTGGVKVRMSMGHEVVGHWFNEEVKDNLSLLDEVEQ AARTVKGSERSWQRAGHEYTIWMDGEEVMIRANQLDFSGDEMEEGMSYYDEESLSLCG MEDFLRVVAAYREFVSKA" gene 190186..191153 /gene="kdgT" /locus_tag="STM0161" /db_xref="GeneID:1251679" regulatory 190186..190191 /regulatory_class="ribosome_binding_site" /gene="kdgT" /locus_tag="STM0161" /note="putative RBS for kdgT; RegulonDB:STMS1H000540" CDS 190200..191153 /gene="kdgT" /locus_tag="STM0161" /note="similar to E. coli 2-keto-3-deoxy-D-gluconate transport system (AAC76891.1); Blastp hit to AAC76891.1 (330 aa), 45% identity in aa 4 - 324" /codon_start=1 /transl_table=11 /product="2-keto-3-deoxygluconate permease" /protein_id="NP_459166.1" /db_xref="GI:16763551" /db_xref="GeneID:1251679" /translation="MNIKKAIERVPGGMMVVPLVIGAVINTFAPQALEIGGFTTALFK NGAAPLIGAFLLCMGAGISVKAAPQALLQGGTITLTKLLVAIGIGLGVEHLFGAEGIF GLSGVAIIAAMSNSNGGLYAALVGEFGNERDVGAISILSLNDGPFFTMIALGAAGMAN IPIMALVAVLVPLVVGMILGNLDPHMRDFLTKGGPLLIPFFAFALGAGINLEMLLQGG LAGILLGVLTTFVGGFFNIRADRLVGGTGIAGAAASSTAGNAVATPLAIAQADPSLAE VAAAAAPLIAASVITTAILTPVLTSWVAKKQARQASLEKNA" gene 191145..192421 /locus_tag="STM0162" /db_xref="GeneID:1251680" regulatory 191145..191150 /regulatory_class="ribosome_binding_site" /gene="kdgT" /locus_tag="STM0161" /note="putative RBS for STM0162; RegulonDB:STMS1H000541" CDS 191150..192421 /locus_tag="STM0162" /note="similar to E. coli orf, hypothetical protein (AAC75779.1); Blastp hit to AAC75779.1 (388 aa), 28% identity in aa 2 - 384" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459167.1" /db_xref="GI:16763552" /db_xref="GeneID:1251680" /translation="MKMIVIADDFTGSNDTGVQLAKKGARTEVMLSASQKPSRRADVL VINTESRAMPADQAASAVYAALSPWCETSPAPLVYKKIDSTFRGNIGAEVTAAMRASQ RKLAVIAAAIPAAGRTTLEGKCLVNGVPLLETEFASDPKTPIVSSRIAEIVALQSEIP VYEVFLQDVRRGGLSALLTAYAAEGEGIIVVDAVEERDLTLIAQAACEQPSMPLLVGA AGLANALPVELFMQDRQRLPVLVVAGSMSEATRRQVDNALCRGRAEVVDIDAARMVSD SAEQEIASVVEQACALLSQHRHTILRTSRRAEDRQLIDALCEKSAMSRQQLGERLSQR LGVVTLNIIEQARIGGLFLTGGDIATAVAGALGAEGYRIQSEVAPCIPCGTFVNSEID DLPVITKAGGFGSDSTLCDALYYIEEMYCGD" gene 192403..193394 /locus_tag="STM0163" /db_xref="GeneID:1251681" regulatory 192403..192408 /regulatory_class="ribosome_binding_site" /locus_tag="STM0163" /note="putative RBS for STM0163; RegulonDB:STMS1H000542" CDS 192411..193394 /locus_tag="STM0163" /note="similar to E. coli pyridoxine biosynthesis (AAC73163.1); Blastp hit to AAC73163.1 (329 aa), 37% identity in aa 2 - 324" /codon_start=1 /transl_table=11 /product="4-hydroxythreonine-4-phosphate dehydrogenase PdxA" /protein_id="NP_459168.1" /db_xref="GI:16763553" /db_xref="GeneID:1251681" /translation="METKTVAITMGDPAGIGPEIIVKALSEDGLNGAPLVVIGCLATL KRLQAKGITPNVELRAIERVAEARFAPGIIHVIDEPLAQPEALEAGKVQAQAGDLAYR CVKRATELALRGDVQAIATAPLNKEALHLAGHNYPGHTELLATLTHSRDYAMVLYTDK LKVIHVSTHIALRKFLDTLSTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGENG LFGDEETRILTPAITDARAKGMDVYGPCPPDTVFLQAYEGQYDMVVAMYHDQGHIPLK LLGFYDGVNITAGLPFIRTSADHGTAFDIAWTGKAKSESMAVSIKLAMQLA" gene 193399..194171 /locus_tag="STM0164" /db_xref="GeneID:1251682" regulatory 193399..193404 /regulatory_class="ribosome_binding_site" /locus_tag="STM0164" /note="putative RBS for STM0164; RegulonDB:STMS1H000543" CDS 193404..194171 /locus_tag="STM0164" /note="similar to E. coli putative DEOR-type transcriptional regulator (AAC75777.1); Blastp hit to AAC75777.1 (265 aa), 34% identity in aa 16 - 265" /codon_start=1 /transl_table=11 /product="DeoR family transcriptional regulator" /protein_id="NP_459169.1" /db_xref="GI:16763554" /db_xref="GeneID:1251682" /translation="MKGQHRLDLIVAYLKNHTLVTVEQLVEAVDASPATIRRDLIKLD EQGVISRSHGGVALRRFEPAQPTTNEKQLRSPAEKRAIARVAASLVNAGDAVVLDAGT TMMELAKCLTHLPLRVITVDLHIALFLAEFRQIEVTIVGGRIDDSSQSCIGEHGRKLL RSVYPNIAFMSCNSWGVKTGVTTPTEDKAGLKQEIIANAQRKVLLADSSKYGAHSLFN VVPLERFNDVITDVNLPPSAQVELKGRAFALTLVQPE" gene complement(194201..195011) /gene="speD" /locus_tag="STM0165" /db_xref="GeneID:1251683" CDS complement(194201..194995) /gene="speD" /locus_tag="STM0165" /EC_number="4.1.1.50" /note="similar to E. coli S-adenosylmethionine decarboxylase (AAC73231.1); Blastp hit to AAC73231.1 (264 aa), 96% identity in aa 1 - 264" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine decarboxylase" /protein_id="NP_459170.1" /db_xref="GI:16763555" /db_xref="GeneID:1251683" /translation="MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYN ANRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPIDPKLIDQTEHPGPLP ETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDI VTIDYRVRGFTRDVNGMKHFIDHEINSIQNFMSEDMKSLYDMVDVNVYQENIFHTKML LKEFDLKHYMFHTKPEDLTETERQEITAALWKEMREIYYGRNISAV" regulatory complement(195006..195011) /regulatory_class="ribosome_binding_site" /gene="speD" /locus_tag="STM0165" /note="putative RBS for speD; RegulonDB:STMS1H000544" gene complement(195016..195889) /gene="speE" /locus_tag="STM0166" /db_xref="GeneID:1251684" CDS complement(195016..195876) /gene="speE" /locus_tag="STM0166" /EC_number="2.5.1.16" /note="similar to E. coli spermidine synthase = putrescine aminopropyltransferase (AAC73232.1); Blastp hit to AAC73232.1 (288 aa), 94% identity in aa 1 - 286" /codon_start=1 /transl_table=11 /product="putrescine aminopropyltransferase" /protein_id="NP_459171.1" /db_xref="GI:16763556" /db_xref="GeneID:1251684" /translation="MAENTMWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFG RVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVE TITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTHQTFDVIISDCT DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQDEALDSHRKLSHYFSDVGF YQAAIPTYYGGIMTFAWATDNDALRHLSSEIIQARFHAAGLKCRYYNPAIHAAAFALP QYLHDALSAQ" regulatory complement(195884..195889) /regulatory_class="ribosome_binding_site" /gene="speE" /locus_tag="STM0166" /note="putative RBS for speE; RegulonDB:STMS1H000545" gene complement(195983..196342) /gene="yacC" /locus_tag="STM0167" /db_xref="GeneID:1251685" CDS complement(195983..196330) /gene="yacC" /locus_tag="STM0167" /note="similar to E. coli orf, hypothetical protein (AAC73233.1); Blastp hit to AAC73233.1 (156 aa), 95% identity in aa 42 - 156" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459172.1" /db_xref="GI:16763557" /db_xref="GeneID:1251685" /translation="MKTFFRPVLFGSLMALCANSYALTESEAEDMADLTAVFVFLKND CGYQNLPNSQIRRALVFFAQQNQWDLSNYDTFDMKSLGEDSYRDLSGIGIPVAKKCKA LARDSLSLLAYVK" regulatory complement(196337..196342) /regulatory_class="ribosome_binding_site" /gene="yacC" /locus_tag="STM0167" /note="putative RBS for yacC; RegulonDB:STMS1H000546" gene 196520..198142 /gene="cueO" /locus_tag="STM0168" /db_xref="GeneID:1251686" regulatory 196520..196525 /regulatory_class="ribosome_binding_site" /gene="cueO" /locus_tag="STM0168" /note="putative RBS for cueO; RegulonDB:STMS1H000547" CDS 196532..198142 /gene="cueO" /locus_tag="STM0168" /note="similar to E. coli orf, hypothetical protein (AAC73234.1); Blastp hit to AAC73234.1 (516 aa), 80% identity in aa 1 - 516" /codon_start=1 /transl_table=11 /product="putative multicopper oxidase" /protein_id="NP_459173.1" /db_xref="GI:16763558" /db_xref="GeneID:1251686" /translation="MLRRDFLKYSVALGVASALPLWSRAAFAAERPALPIPDLLTADA SNRMQLIVKAGQSTFAGKNATTWGYNGNLLGPAVQLHKGKSVTVDIHNQLAEDTTLHW HGLEIPGIVDGGPQGIIPAGGTRTVTFTPEQRAATCWIHPHKHGKTGRQVAMGLAGLV LIEDDEIRKLRLPKQWGIDDVPVIIQDKRFSADGQIDYQLDIMTAAVGWFGDTLLTNG AIYPQHSAPKGWLRLRLLNGCNARSLNIAASDNRPLYVIASDGGLLAEPVKVTELPLL MGERFEVLVDISDGKAFDLVTLPVSQMGMAIAPFDKPHPVMRIQPLRITASGTLPDTL TTMPALPSLEGLTVRNLKLSMDPRLDMMGMQMLMKKYGAQAMSGMDHDSMNAHMQGGN MGHGEMDHGNMDHSGMNHGAMGNMNHGGKFDFHNANFINGQVFDMNKPMFAAQKGRHE RWVISGVGDMMLHPFHIHGTQFRILSENGKAPAAHRTGWKDTVRVEGGISEVLVKFDH DAPKEHAYMAHCHLLEHEDTGMMLGFTV" gene complement(198220..200623) /gene="gcd" /locus_tag="STM0169" /db_xref="GeneID:1251687" CDS complement(198220..200610) /gene="gcd" /locus_tag="STM0169" /EC_number="1.1.5.2" /note="similar to E. coli glucose dehydrogenase (AAC73235.1); Blastp hit to AAC73235.1 (796 aa), 92% identity in aa 1 - 796" /codon_start=1 /transl_table=11 /product="pyrroloquinoline quinone-dependent dehydrogenase" /protein_id="NP_459174.1" /db_xref="GI:16763559" /db_xref="GeneID:1251687" /translation="MAENNARSPRLLVTLTALFAALCGLYLLIGGVWLVAIGGSWYYP IAGLVMLVVAGLLWRSKRAALWLYAALLLATMIWGVWEVGFDFWALTPRSDILVFFGI WLILPFVWHRLVVPSSGAVAALVVALLISGGILTWAGFNDPQEINGTLRADATPAATS SSIADEDWPAYGRNQEGQRYSPLKQITADNVHQLKEAWVFRTGDLKQPNDPGEITNEV TPIKVGDTLYLCTAHQRLFALDAASGKEKWHFDPQLKTDSSFQHVTCRGVSYHEAKAD TASPEVIADCPRRIILPVNDGRLFAVNAETGKLCETFANKGVLNLQTNMPDTTPGLYE PTSPPIITDKTIVIAGSVTDNFSTRETSGVIRGFDVNSGKLMWAFDPGAKDPNAIPAD EHAFTFNSPNSWAPAAYDAKLDLVYLPMGVTTPDIWGGNRTPEQERYASSILALNATT GKLAWSYQTVHHDLWDMDLPAQPTLADITVDGTTVPVIYAPAKTGNIFVLDRRNGELV VPAPEKPVPQGAAKGDYVAKTQPFSDLTFRPKKDLSGADMWGATMFDQLVCRVMFHQL RYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPDRQVAIANPMALPFVSKLIPRGPGN PMEPPKDAKGTGTEAGIQPQYGVPFGVTLNPFLSPFGLPCKQPAWGYISALDLKTNEI VWKKRIGTPRDSMPFPMPVPVPFNMGMPMLGGPISTAGNVLFIAATADNYLRAYNMSN GEKLWQGRLPAGGQATPMTYEVNGKQYVVVSAGGHGSFGTKMGDYIVAYALPDDAK" regulatory complement(200618..200623) /regulatory_class="ribosome_binding_site" /gene="gcd" /locus_tag="STM0169" /note="putative RBS for gcd; RegulonDB:STMS1H000548" gene 200804..201352 /gene="hpt" /locus_tag="STM0170" /db_xref="GeneID:1251688" regulatory 200804..200809 /regulatory_class="ribosome_binding_site" /gene="hpt" /locus_tag="STM0170" /note="putative RBS for hpt; RegulonDB:STMS1H000549" CDS 200816..201352 /gene="hpt" /locus_tag="STM0170" /EC_number="2.4.2.8" /note="hypoxanthine phosphoribosyltransferase. (SW:HPRT_SALTY)" /codon_start=1 /transl_table=11 /product="hypoxanthine phosphoribosyltransferase" /protein_id="NP_459175.1" /db_xref="GI:16763560" /db_xref="GeneID:1251688" /translation="MKHTVEVMIPEAEIKARIAELGRQITERYKDSGSEMVLVGLLRG SFMFMADLCREVQVPHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDII DSGNTLSKVREILGLREPKSLAICTLLDKPSRREVDVPVEFVGFSIPDEFVVGYGIDY AQRYRHLPYVGKVVLLDE" gene complement(201410..202088) /gene="yadF" /locus_tag="STM0171" /db_xref="GeneID:1251689" CDS complement(201410..202072) /gene="yadF" /locus_tag="STM0171" /EC_number="4.2.1.1" /note="similar to E. coli putative carbonic anhdrase (AAC73237.1); Blastp hit to AAC73237.1 (220 aa), 90% identity in aa 1 - 220" /codon_start=1 /transl_table=11 /product="carbonate dehydratase" /protein_id="NP_459176.1" /db_xref="GI:16763561" /db_xref="GeneID:1251689" /translation="MKDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSD SRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHSGCG GIKAAVENPELGLINNWLLHIRDIWLKHSSLLGKMPEEQRLDALYELNVMEQVYNLGH STIMQSAWKRGQNVTIHGWAYSINDGLLRDLDVTATNRETLENGYHKGISALSLKYIP HQ" regulatory complement(202083..202088) /regulatory_class="ribosome_binding_site" /gene="yadF" /locus_tag="STM0171" /note="putative RBS for yadF; RegulonDB:STMS1H000550" gene 202173..203107 /gene="yadG" /locus_tag="STM0172" /db_xref="GeneID:1251690" regulatory 202173..202178 /regulatory_class="ribosome_binding_site" /gene="yadG" /locus_tag="STM0172" /note="putative RBS for yadG; RegulonDB:STMS1H000551" CDS 202181..203107 /gene="yadG" /locus_tag="STM0172" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73238.1); Blastp hit to AAC73238.1 (308 aa), 95% identity in aa 1 - 308" /codon_start=1 /transl_table=11 /product="multidrug ABC transporter ATP-binding protein" /protein_id="NP_459177.1" /db_xref="GI:16763562" /db_xref="GeneID:1251690" /translation="MTIALELQQLKKTYPGGVQALRGIDLQVEAGDFYALLGPNGAGK STTIGIISSLVNKTSGRVNVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQ AGYYGVEHKEAVLRSEKYLKQLDLWEKRHERARMLSGGMKRRLMIARALMHEPKLLIL DEPTAGVDIELRRSMWGFLKDLNAKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENT SMKNLLSKLKSETFILDLAPKSPLPKLTGYQYRLVDTSTLEVEVLREQGVNSVFSQLS EQGVQVLSMRNKANRLEELFVSLVHEKQGDRA" gene 203091..203874 /gene="yadH" /locus_tag="STM0173" /db_xref="GeneID:1251691" regulatory 203091..203096 /regulatory_class="ribosome_binding_site" /gene="yadH" /locus_tag="STM0173" /note="putative RBS for yadH; RegulonDB:STMS1H000552" CDS 203104..203874 /gene="yadH" /locus_tag="STM0173" /note="ABC superfamily (membrane); similar to E. coli orf, hypothetical protein (AAC73239.1); Blastp hit to AAC73239.1 (256 aa), 94% identity in aa 1 - 256" /codon_start=1 /transl_table=11 /product="ABC transporter permease" /protein_id="NP_459178.1" /db_xref="GI:16763563" /db_xref="GeneID:1251691" /translation="MMQLYWVALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGN LIGSRIGEMHGFSYMQFIVPGLIMMAVITNSYANVASSFFSAKFQRNIEELLVAPVPT HVIIAGFVGGGVARGLCVGILVTAISLFFVPFQVHSWVFVALTLILTAILFSLAGLLN AVFAKTFDDISLIPTFVLTPLTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGF LGIHDVPLVTTFGVLVIFIAAFYLLCWSLIQRGRGLRS" gene complement(203991..205077) /gene="stiH" /locus_tag="STM0174" /db_xref="GeneID:1251692" CDS complement(203991..205070) /gene="stiH" /locus_tag="STM0174" /note="lpfd protein precursor (SW:LPFD_SALTY)" /codon_start=1 /transl_table=11 /product="fimbrial protein StiH" /protein_id="NP_459179.1" /db_xref="GI:16763564" /db_xref="GeneID:1251692" /translation="MKNLWMLLALSLFSGHALADGTMGNGSGWCQPTSGTHNFFFPLD QTITDTDENQAGKIVKESWSVGGEYSARCDCDNKDYQGVNYFTATTGDLTQKGTYSEA GSNGQQMDFYVLVAGKLEIGTETYIVGNLKQYIPVPFSAISNQDPTAGGCTGADINKM SAGNKGNVRIYITHPLVGEITIPETTIMNLYLSKTPGSSGDNIPPSVPPMAHVTMSGT ITVPQSCSINAGQVIEVRLPDIEGKDIRHLGDSPQNSHVTTQVNFTCSNVADGTNLSM SLNGATDPHNPDYLKTDNENLGIRISDKYDNTIVPGGSAELPIEDYTDGRGSTEFTAA PVNTTGHVPHTGEYQATATLEIQIR" regulatory complement(205072..205077) /regulatory_class="ribosome_binding_site" /gene="stiH" /locus_tag="STM0174" /note="putative RBS for stiH; RegulonDB:STMS1H000553" gene complement(205079..207631) /gene="stiC" /locus_tag="STM0175" /db_xref="GeneID:1251693" CDS complement(205079..207625) /gene="stiC" /locus_tag="STM0175" /note="similar to E. coli putative outer membrane protein (AAC76178.1); Blastp hit to AAC76178.1 (838 aa), 39% identity in aa 20 - 558, 34% identity in aa 493 - 837" /codon_start=1 /transl_table=11 /product="fimbrial assembly protein" /protein_id="NP_459180.1" /db_xref="GI:16763565" /db_xref="GeneID:1251693" /translation="MRKRQHRVFYLSRCAVCIALGSTFTHVAWARDYFNPAFIENHGQ ANRTSVDLSTFDNDKSQLPGTYYVTININKTEIGARNVDFQLATLSDGQQALQGCLRL QELKDNGVKTDLFPTLESEKGCVDLSVIPGASQRFDFQQQALSVSIPQLYIANNARGY VPPEKWQEGITALMLNYSFSGYKEYGSSEDSDDAESKYLALQPGFNLGPWRFRNYSNW SSNNGENGSWNSVYNYLQRDIIALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQP NSQRGYAPTIRGIARSNAQVIVRQNGYIAYQTAVSPGEFEINDMFPTGSNGDYDVTVK EADGSEQHFIVPYSSLPILQRTGRAKYSVTVGKYRDYNNHALDDFGQATLLYGLPWGI TLYGGSQIAGDKYQSVAFGVGQNMQMLGAISLDGIWSHAKFDDGRKEIGQSWHVRYSK GVVSTGTTFSLAGYRYASENYNSLSEVINPDDDFYDNYGKRHNRFEASVNQQISNTLG SLTLSWVKEDYWHSAQQMESLSASYNNSWGPVSYTLSYSYNKNTYQYRSDNDDDDNDD DRYNQNDRLFTLSLHVPFTVFDSRLYASYMLNTRKHDATVNSTTLSGTALRDRNLNWS LQQSHSTQDGDSGGVNASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQ PITGAAILIKAPGASGVSVENQTGVATDFRGYTVIPNVTPYYRYDISLDSSTFADNVD IPLNNQTVYPTRNAVVRAAYDTHKGYRVLLTLTRSNGEPVPFGATASVDGQDANLASI VGDKGQVFLSGLPEEGLLLVNWGSASCRADYRLDISKNMNGIVMANAVCQ" regulatory complement(207626..207631) /regulatory_class="ribosome_binding_site" /gene="stiC" /locus_tag="STM0175" /note="putative RBS for stiC; RegulonDB:STMS1H000554" gene complement(207652..208341) /gene="stiB" /locus_tag="STM0176" /db_xref="GeneID:1251694" CDS complement(207652..208335) /gene="stiB" /locus_tag="STM0176" /note="similar to E. coli periplasmic chaperone, required for type 1 fimbriae (AAC77272.1); Blastp hit to AAC77272.1 (241 aa), 39% identity in aa 20 - 235" /codon_start=1 /transl_table=11 /product="long polar fimbrial chaperone LpfB" /protein_id="NP_459181.1" /db_xref="GI:16763566" /db_xref="GeneID:1251694" /translation="MNSLAKAGLLCCLLCGSLAHAAGINIGTTRVIFHGDAKDASISI SNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGGNLPEDR ESLYWLDIKSIPSSNPDNKHNTLMLAVKAEFKLIYRPKALTQKPEEVADRLTWSRQGR TLTVKNPTPYYMNFATLSVGSQKVKAPRYVAPFGNAQYTLPAAASGPIVWSIINDFGG TGPEHKQTP" regulatory complement(208336..208341) /regulatory_class="ribosome_binding_site" /gene="stiB" /locus_tag="STM0176" /note="putative RBS for stiB; RegulonDB:STMS1H000555" gene complement(208383..208928) /gene="stiA" /locus_tag="STM0177" /db_xref="GeneID:1251695" CDS complement(208383..208922) /gene="stiA" /locus_tag="STM0177" /note="similar to E. coli major type 1 subunit fimbrin (pilin) (AAC77270.1); Blastp hit to AAC77270.1 (182 aa), 37% identity in aa 1 - 181" /codon_start=1 /transl_table=11 /product="fimbrial protein StiA" /protein_id="NP_459182.1" /db_xref="GI:16763567" /db_xref="GeneID:1251695" /translation="MKLSLKTLTVALAAITLSPAALADTAKDGTVHITGLIKQNACTV KTDSVEVTLQEEFASLFTAAGQTAGDTDFTIELENCDANVYSSVQARFEGTLDGTDAT ILKNEDDAENIGVQILDKTSTPMTFNDLQAWSAPVNLPTAEGVTELSMPFTARYIATA VPVKSGTVDATATFYLQYN" regulatory complement(208923..208928) /regulatory_class="ribosome_binding_site" /gene="stiA" /locus_tag="STM0177" /note="putative RBS for stiA; RegulonDB:STMS1H000556" gene 209282..209733 /gene="yadI" /locus_tag="STM0178" /db_xref="GeneID:1251696" regulatory 209282..209287 /regulatory_class="ribosome_binding_site" /gene="yadI" /locus_tag="STM0178" /note="putative RBS for yadI; RegulonDB:STMS1H000557" CDS 209293..209733 /gene="yadI" /locus_tag="STM0178" /EC_number="2.7.1.191" /note="similar to E. coli putative PTS enzyme II B component (AAC73240.1); Blastp hit to AAC73240.1 (146 aa), 76% identity in aa 1 - 146" /codon_start=1 /transl_table=11 /product="PTS sugar transporter subunit IIA" /protein_id="NP_459183.1" /db_xref="GI:16763568" /db_xref="GeneID:1251696" /translation="MLGWVISCHDDRAQEMLEGLEKKYGPLAQCRAVNFWRGLSVNML SRMMCDALHATDSGEGVIFLTDISGAAPYRVASLMSHKHSQCEVISGVSYSLMEEMIT WRESMSSSAFRDQIVALGAPDVTSLWHQQQKNPPFVLLHDSYEF" gene 209795..211024 /gene="yadE" /locus_tag="STM0179" /db_xref="GeneID:1251697" CDS 209795..211024 /gene="yadE" /locus_tag="STM0179" /note="similar to E. coli orf, hypothetical protein (AAC73241.1); Blastp hit to AAC73241.1 (409 aa), 81% identity in aa 1 - 409" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459184.1" /db_xref="GI:16763569" /db_xref="GeneID:1251697" /translation="MVMRVVLILLFFFAGNVLAALPARYMQTTKDAAIWSQIGDKMVT VGNIRAGQILSVTPVAADYYAFKFGFGVGFIDKGHLESVQGKQKVEDGLGDLNKPLSN QNLVTWKDTPVYNAPDISSAPFGVLVDNLRYPIISKLKGRLHQTWYQIRIGDRLAYVN AMDAQEDNGIPILTYHHILRDEENTRFRHTSTTTSVRAFSNQMTWLRDRGYATLTMYQ LEDYIYNRANFPARAVAITFDDGLKSVSRYAYPVLKQYDMKATAFIISSRIKRHPQKW NPRSLQFMSVSELRKISDVFDFQSHTHFLHRVDGHRRPILYSRSYHNILFDFERSRRA LAQFTPHVFYLSYPFGGYNATAIKAAKDAGFHLAVTTVRGKVKPGDNPMLLKRLYILR TDSLETMSRLISNQPQG" gene complement(211031..211426) /gene="panD" /locus_tag="STM0180" /db_xref="GeneID:1251698" CDS complement(211031..211411) /gene="panD" /locus_tag="STM0180" /EC_number="4.1.1.11" /note="similar to E. coli aspartate 1-decarboxylase (AAC73242.1); Blastp hit to AAC73242.1 (126 aa), 96% identity in aa 1 - 126" /codon_start=1 /transl_table=11 /product="aspartate 1-decarboxylase" /protein_id="NP_459185.1" /db_xref="GI:16763570" /db_xref="GeneID:1251698" /translation="MIRTMLQGKLHRVKVTQADLHYEGSCAIDQDFLDASGILENEAI DIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCAEVGDIVIIASFVTMSDEEARTWR PKVAYFEGDNEMKRTAKAIPVQVA" regulatory complement(211421..211426) /regulatory_class="ribosome_binding_site" /gene="panD" /locus_tag="STM0180" /note="putative RBS for panD; RegulonDB:STMS1H000558" gene complement(211506..212373) /gene="panC" /locus_tag="STM0181" /db_xref="GeneID:1251699" CDS complement(211506..212360) /gene="panC" /locus_tag="STM0181" /EC_number="6.3.2.1" /note="similar to E. coli pantothenate synthetase (AAC73244.1); Blastp hit to AAC73244.1 (283 aa), 87% identity in aa 1 - 283" /codon_start=1 /transl_table=11 /product="pantoate--beta-alanine ligase" /protein_id="NP_459186.1" /db_xref="GI:16763571" /db_xref="GeneID:1251699" /translation="MLIIETLPLLRQHIRRLRQEGKRVALVPTMGNLHDGHMKLVDEA KARADVVIVSIFVNPMQFDRPDDLVRYPRTLQEDCEKLNKRKVDYVFAPAVEEIYPHG LEGQTYVDVPGLSTMLEGASRPGHFRGVSTIVSKLFNLIQPDIACFGEKDFQQLALIR KMVADMSYDIEIVGVPIIRAKDGLALSSRNAYLTAEQRKIAPGLYNVMNSIAEKLIAG NRELQEIIAIAEQELNEKGFRADDIQIRDADTLLELTETSKRAVILAAAWLGQARLID NQSVTLAQ" regulatory complement(212368..212373) /regulatory_class="ribosome_binding_site" /gene="panC" /locus_tag="STM0181" /note="putative RBS for panC; RegulonDB:STMS1H000559" gene complement(212486..213288) /gene="panB" /locus_tag="STM0182" /db_xref="GeneID:1251700" CDS complement(212486..213277) /gene="panB" /locus_tag="STM0182" /EC_number="2.1.2.11" /note="similar to E. coli 3-methyl-2-oxobutanoate hydroxymethyltransferase (AAC73245.1); Blastp hit to AAC73245.1 (264 aa), 92% identity in aa 1 - 264" /codon_start=1 /transl_table=11 /product="3-methyl-2-oxobutanoate hydroxymethyltransferase" /protein_id="NP_459187.1" /db_xref="GI:16763572" /db_xref="GeneID:1251700" /translation="MKPTTISLLQKCKQEKKRFATITAYDYSFAKLFADEGINVMLVG DSLGMTIQGHDSTLPVTVEDIAYHTRAVRRGAPNCLLLSDLPFMAYATPEQACENAAI VMRAGANMVKIEGGAWLVDTVKMLTERAVPVCGHLGLTPQSVNIFGGYKIQGRGDAGQ VLLDDALALEAAGAQLLVLECVPVELAKRVTEALSIPVIGIGAGNVTDGQILVMHDAF GITGGHIPKFAKNFLAEAGDMRAAVQQYMAEVESGVYPGEEHSFH" regulatory complement(213283..213288) /regulatory_class="ribosome_binding_site" /gene="panB" /locus_tag="STM0182" /note="putative RBS for panB; RegulonDB:STMS1H000560" gene complement(213398..213888) /gene="folK" /locus_tag="STM0183" /db_xref="GeneID:1251701" CDS complement(213398..213877) /gene="folK" /locus_tag="STM0183" /EC_number="2.7.6.3" /note="similar to E. coli 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase (AAC73253.1); Blastp hit to AAC73253.1 (159 aa), 87% identity in aa 1 - 148" /codon_start=1 /transl_table=11 /product="2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase" /protein_id="NP_459188.1" /db_xref="GI:16763573" /db_xref="GeneID:1251701" /translation="MTIAYIALGSNLASPLEQVNAALKAIADIPDSRIVAVSSFYRTP PLGPQDQPDYLNAAVALDTALAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLF GDEVINTDRLTVPHYDMKNRGFMLWPLFEIAPDLIFPDGISLHQHLTHLGAAKPAHW" gene complement(213874..215292) /gene="pcnB" /locus_tag="STM0184" /db_xref="GeneID:1251702" CDS complement(213874..215292) /gene="pcnB" /locus_tag="STM0184" /EC_number="2.7.7.19" /note="similar to E. coli poly(A) polymerase I (AAC73254.1); Blastp hit to AAC73254.1 (454 aa), 90% identity in aa 1 - 453" /codon_start=1 /transl_table=11 /product="polynucleotide adenylyltransferase" /protein_id="NP_459189.1" /db_xref="GI:16763574" /db_xref="GeneID:1251702" /translation="MTLPRCAIFTRVANFCRKVLSREESEAEQAVARPHMTIIPREQH AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKL FRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGS IEEDAQRRDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLR AVRFAAKLNMHISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREY HLFQPLFPTITRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLL EMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQG KRAWKLMEHPKFRAAFDLLELRAQVENNTELQRLAQWWAEFQASAPPEQKGMLNELDD DPAPRRRRSRPRKRAPRREGTV" regulatory complement(213883..213888) /regulatory_class="ribosome_binding_site" /gene="folK" /locus_tag="STM0183" /note="putative RBS for folK; RegulonDB:STMS1H000561" gene complement(215433..216374) /gene="yadB" /locus_tag="STM0185" /db_xref="GeneID:1251703" CDS complement(215433..216374) /gene="yadB" /locus_tag="STM0185" /note="similar to E. coli putative tRNA synthetase (AAC73255.1); Blastp hit to AAC73255.1 (308 aa), 79% identity in aa 5 - 307" /codon_start=1 /transl_table=11 /product="putative glutamyl t-RNA synthetase" /protein_id="NP_459190.3" /db_xref="GI:1109557571" /db_xref="GeneID:1251703" /translation="MTGGSFPALFFIARSMTDSHYIGRFAPSPSGELHFGSLIAALGS YLQARAQRGIWRVRIEDIDPPREVPGAAATILRQLEHYGLHWDGEVLWQSQRHEAYRE ALAWLHEQGLSYYCTCPRSRIQRLGGIYDGHCRTLCHGPENAAVRIKQQHPVMHFHDA LRGDIQADPQLASEDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQLS LYKQFGWRAPGYVHLPLALNEQGAKLSKQNHAPALATGDPRPVLVQALRFLGQRDVVA WQEMSVEELLRFAVAHWRLTAVPTSANVNPAFSNASR" gene complement(216398..216866) /gene="dksA" /locus_tag="STM0186" /db_xref="GeneID:1251704" CDS complement(216398..216853) /gene="dksA" /locus_tag="STM0186" /note="dnaK suppressor protein. (SW:DKSA_SALTY)" /codon_start=1 /transl_table=11 /product="RNA polymerase-binding protein DksA" /protein_id="NP_459191.1" /db_xref="GI:16763576" /db_xref="GeneID:1251704" /translation="MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLSHFKRIL EAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKT LKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG" regulatory complement(216861..216866) /regulatory_class="ribosome_binding_site" /gene="dksA" /locus_tag="STM0186" /note="putative RBS for dksA; RegulonDB:STMS1H000562" gene complement(217030..217745) /gene="sfsA" /locus_tag="STM0187" /db_xref="GeneID:1251705" CDS complement(217030..217734) /gene="sfsA" /locus_tag="STM0187" /note="similar to E. coli probable regulator for maltose metabolism (AAC73257.1); Blastp hit to AAC73257.1 (234 aa), 82% identity in aa 1 - 234" /codon_start=1 /transl_table=11 /product="sugar fermentation stimulation protein SfsA" /protein_id="NP_459192.1" /db_xref="GI:16763577" /db_xref="GeneID:1251705" /translation="MLFSPPLQRATLIQRYKRFLADVITPDGTTLTLHCPNTGAMTGC ATPGDTVWYSTSENTKRKYPHTWELTETQSGAFICVNTLRANQLTKEAIQENRLPALA GYNILKSEVKYGAERSRIDFMLQADFRPDCYIEVKSVTLAEKENGYFPDAITERGQKH LRELMGVAAAGHRAVVVFAVLHSAITRFSPARHIDIKYAQLLSEAQNKGVEVLAYKAE LSAQKMELNEPVPITL" regulatory complement(217740..217745) /regulatory_class="ribosome_binding_site" /gene="sfsA" /locus_tag="STM0187" /note="putative RBS for sfsA; RegulonDB:STMS1H000563" gene complement(217751..218281) /gene="ligT" /locus_tag="STM0188" /db_xref="GeneID:1251706" CDS complement(217751..218281) /gene="ligT" /locus_tag="STM0188" /EC_number="6.5.1.-" /note="similar to E. coli orf, hypothetical protein (AAC73258.1); Blastp hit to AAC73258.1 (179 aa), 77% identity in aa 4 - 177" /codon_start=1 /transl_table=11 /product="2'-5' RNA ligase" /protein_id="NP_459193.1" /db_xref="GI:16763578" /db_xref="GeneID:1251706" /translation="MSEPKRLFFAIDLPDDARAQIIAWRAAHFASEDGRPVAAANLHL TLAFLGDVSSDKQRALAQLAGRIRQPGFTLHLDDAGQWLRSRVVWLGMRQPPRGLLQL ANMLRAQAARSGCYQSPQPFHPHITLLRDASHTVAIPPPGFCWSFPVTSFALYASSYG QGRTRYAELQRWTLGE" gene 218296..220783 /gene="hrpB" /locus_tag="STM0189" /db_xref="GeneID:1251707" regulatory 218296..218301 /regulatory_class="ribosome_binding_site" /gene="hrpB" /locus_tag="STM0189" /note="putative RBS for hrpB; RegulonDB:STMS1H000564" CDS 218309..220783 /gene="hrpB" /locus_tag="STM0189" /note="similar to E. coli helicase, ATP-dependent (AAC73259.1); Blastp hit to AAC73259.1 (824 aa), 84% identity in aa 1 - 824" /codon_start=1 /transl_table=11 /product="ATP-dependent helicase" /protein_id="NP_459194.1" /db_xref="GI:16763579" /db_xref="GeneID:1251707" /translation="MLQCGAKKVNPVEPFVTSLPVAAVLPELLTALKIAPQVLLSAPT GAGKSTWLPLQLLQQGPVAGKILLLEPRRLAARNVAQRLAEALNEKPGETVGYRMRAQ SCVGPRTRLEVVTEGVLTRMIQRDPELRGVGLVILDEFHERSLQADLALALLLDIQQG LRDDLRLLIMSATLDNDRLCQRLPDAPTIVSEGRAFPVERRYQPLAAHLRFDEAVAMA TAELLRNENGSLLLFLPGVGEIQRVHEHLASRVGSDVLLCPLYGALSLEAQRKAIVPA PAGMRKVVLATNIAETSLTIEGIRLVVDSAQERVARFDARTGLTRLVTQRISQASMTQ RAGRAGRLAPGICLHLLAKEQAERAAAQSDPEILHSDLSGLLMEVLQWGCHDPASLFW LDRPPEVNLQAARRLLLMLGALEGERLSARGRKMAAMGNDPRLAAMLVNAGEGDSAAT AAMLAAILEDPPRGGGTDLSVVFSRRQPGWQQRSQQLLKRLQVRNGEPDSALIMPLLA RAFSDRIARRRGQEGRYQLANGMGAMLDADDALGRHEWLIAPLLLQGSASPDARILLA QPLDIASLIQACPDLLRQSDTVEWDEAQGTLKAWRRMRIGQLTVSVQPLAKPSEEELH QAMLNGIRDKGLSVLNWTPEAEQFRLRLHCAAKWLPEYDWPAVDEASLLATLENWLLP HMTGVQSLRGLKSLNVNQALRGLLDYAMLQRLDSELPGHYTVPTGSRITIRYHEDNPP ALAVRMQEMFGEAKTPTIAQGRVPLVLELLSPAQRPLQITRDLSAFWQGAYREVQKEM KGRYPKHVWPDDPANTAPTRRTKKYS" gene 220911..223446 /gene="mrcB" /locus_tag="STM0190" /db_xref="GeneID:1251708" regulatory 220911..220916 /regulatory_class="ribosome_binding_site" /gene="mrcB" /locus_tag="STM0190" /note="putative RBS for mrcB; RegulonDB:STMS1H000565" CDS 220924..223446 /gene="mrcB" /locus_tag="STM0190" /note="similar to E. coli peptidoglycan synthetase; penicillin-binding protein 1B (AAC73260.1); Blastp hit to AAC73260.1 (844 aa), 92% identity in aa 1 - 844" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 1B" /protein_id="NP_459195.1" /db_xref="GI:16763580" /db_xref="GeneID:1251708" /translation="MAGNDREPIGRKGKPSRPVKQKVSRRRQHDDDYDDDYEDEEPMP RKGKGKGRKPRGKRGWLWLLLKLFIVFVVLFAIYGVYLDQKIRSRIDGKVWQLPAAVY GRMVNLEPDMPVSKNEMVKLLEATQYRLVTKMTRPGEFTVQANSIEMIRRPFDFPDSK EGQVRARLTFSDGRLETIVNLDNNRQFGFFRLDPRLITMLSSPNGEQRLFVPRSGFPD LLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSE RSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPV EELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQKIIDQELYDMLSAR PLGVQPRGGVISPQPAFMQMVRQELQAKLGDKIKDLSGVKIFTTFDSVAQDAAEKAVV EGIPALKKQRKLSDLETAMVVVDRFSGEVRAMVGGAEPQYAGYNRAMQARRSIGSLAK PATYLTALSQPNLYRLNTWIADAPISLRQPNGQVWSPQNDDRRYSESGKVMLVDALTR SMNVPTVNLGMALGLPAVTDTWTKLGVPKDQLNPVPAMLLGALNLTPIEVAQAFQTIA SGGNRAPLSALRSVIAEDGKVLYQSYPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLG AKYPGLHLAGKTGTTNNNVDTWFAGIDGSQVTITWVGRDNNQPTKLYGASGAMAIYQR YLANQTPTPLVLTPPEDVVDMGVDYDGNFVCSGGMRTLPVWTDDPNTLCQQGEMMQQQ QQPSGNPFDQSSQPQQPAQQQPPKEEKSDGVAGWIKEMFGGN" gene 223726..225928 /gene="fhuA" /locus_tag="STM0191" /db_xref="GeneID:1251709" regulatory 223726..223731 /regulatory_class="ribosome_binding_site" /gene="fhuA" /locus_tag="STM0191" /note="putative RBS for fhuA; RegulonDB:STMS1H000566" CDS 223739..225928 /gene="fhuA" /locus_tag="STM0191" /note="similar to E. coli outer membrane protein receptor for ferrichrome, colicin M, and phages T1, T5, and phi80 (AAC73261.1); Blastp hit to AAC73261.1 (747 aa), 68% identity in aa 1 - 747" /codon_start=1 /transl_table=11 /product="ferrichrome porin FhuA" /protein_id="NP_459196.1" /db_xref="GI:16763581" /db_xref="GeneID:1251709" /translation="MARLKTAQPNSSLRKIAVVVATAVSGMSVYAQAAVQPKEETITV TAAPAAQESAWGPAPTIAAKRSATTTKTDTPIEKTPQSVSVVTNEEMQMHQFQSVKEA LGYTPGVTVSSRGASNTYDFVIIRGFSSVGLSQNNYLDGLKLQGNFYNDAVIDPYMLE RVELMRGPTSVLYGKSNPGGIISMVSKRPTTEPLKEIQFKMGTDNLFQTGFDFSDSLD DNGEFSYRLTGLARSTNEQQKSSESQRYAIAPSFTWRPDEKTNFTFLSYFQNEPETGY YGWLPKEGTVEPLPNGKRLPTDFNEGASNNTYSRNEKMVGYSFEHGFNDTFTVRQNLR FVEMKTAQKSVYGTGIAADGHTLNRGTIVDNERLQNFSVDTQLESKFATGDIDHTLLT GVDFMRMRNDINATFGSAPSIDLYNNYHPEYFAFGGAEPYQMNESKQTGLYVQDQAEW NKWVFTLGGRYDWSKQATTVRQNSTTPTEGYIERNDHQFTWRGGVNYVFDNGISPYFS YSQSFEPSAFDLWSTPRVSYKPSKGEQYEAGVKYVPKDMPVVVTGAVYQLTKTNNLTA DPTNPLAQVPAGEIRARGVELEAKAALTANINMTASYTYTDAEYTKDTNLKGNTPEQV PEHMASLWGDYTFNEGPLSGLTLGTGGRFIGSSYGDPANSFKVGSAAVMDAVVKYDLA RFGMAGSSIAVNVNNLLDREYVASCFQTYGCFWGAERQVVATATFRF" gene 225977..226774 /gene="fhuC" /locus_tag="STM0192" /db_xref="GeneID:1251710" CDS 225977..226774 /gene="fhuC" /locus_tag="STM0192" /note="ABC superfamily (atp_bind); similar to E. coli ATP-binding component of hydroxymate-dependent iron transport (AAC73262.1); Blastp hit to AAC73262.1 (265 aa), 92% identity in aa 1 - 265" /codon_start=1 /transl_table=11 /product="iron-hydroxamate transporter ATP-binding subunit" /protein_id="NP_459197.1" /db_xref="GI:16763582" /db_xref="GeneID:1251710" /translation="MQENHIHSDTTFALRSVAFRVPGRTLLHPLSLTFPAGRVTGLIG HNGSGKSTLLKMLGRHQPPSEGDILLDNQPLASWSSKAFARKVAYLPQQLPQAEGMTV RELVAIGRYPWHGALGRFGVADREKVDEAITLVGLKPLAHRLVDSLSGGERQRAWIAM LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQQRGLTVVAVLHDINMAARYCDYL VALRGGEMIAQGTPAELMRSDTLEQIYGIPMGILPHPAGAAPVSFVY" gene 226774..227664 /gene="fhuD" /locus_tag="STM0193" /db_xref="GeneID:1251711" CDS 226774..227664 /gene="fhuD" /locus_tag="STM0193" /note="ABC superfamily (bind _prot); similar to E. coli hydroxamate-dependent iron uptake, cytoplasmic membrane component (AAC73263.1); Blastp hit to AAC73263.1 (296 aa), 82% identity in aa 1 - 296" /codon_start=1 /transl_table=11 /product="iron-hydroxamate transporter substrate-binding subunit" /protein_id="NP_459198.1" /db_xref="GI:16763583" /db_xref="GeneID:1251711" /translation="MRDLYPLTRRRLLTAMALSPLLWQMNTAQAAAIDPRRIVALEWL PVELLLALGITPYGVADVPNYKLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVW SAGYGPSPEKLARIAPGRGFDFSDGKKPLAVARRSLVELAQTLNLEAAAEKHLAQYDR FIASQKPHFIRRGGRPLLMTTLIDPRHMLVLGPNCLFQEVLDEYGIVNAWQGETNFWG STAVSIDRLAMYKEADVICFDHGNNTDMNALMATPLWQAMPFVRAGRFHRVPAVWFYG ATLSTMHFVRILNNVLGGKA" gene 227651..229718 /gene="fhuB" /locus_tag="STM0194" /db_xref="GeneID:1251712" regulatory 227651..227656 /regulatory_class="ribosome_binding_site" /gene="fhuD" /locus_tag="STM0193" /note="putative RBS for fhuB; RegulonDB:STMS1H000567" CDS 227661..229718 /gene="fhuB" /locus_tag="STM0194" /note="ABC superfamily (membrane); similar to E. coli hydroxamate-dependent iron uptake, cytoplasmic membrane component (AAC73264.1); Blastp hit to AAC73264.1 (660 aa), 90% identity in aa 9 - 660" /codon_start=1 /transl_table=11 /product="Fe3+-hydroxamate ABC transporter permease FhuB" /protein_id="NP_459199.1" /db_xref="GI:16763584" /db_xref="GeneID:1251712" /translation="MSRKREMPDGGAKSVLSDLRFGRFVGRIRRSRHPALLLLALFVA ACWLTWVNFSVALPRSQWQQAIWSPDIDIIEQMIFHYSQLPRLAISLLVGAGLGLVGV LFQQVLRNPLAEPTTLGVATGAQLGITVTTLWAIPGALTTQFAALTGACIVGALVFGV AWGKRLSPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWSTGTLTQTDWSGVQR LWPQLLGGVMLTLLLLRPMTLMGLDDGVARNLGLALSLARLAALSLAIVLSALLVNAV GIIGFIGLFAPLLAKMLGARRLLARLMLAPLIGALILWLSDQIILWLTRVWMEVSTGS VTALIGAPLLLWLLPRLKSMSAPDMNASDRVAAERRHVLAFAVAGGALLLLATWVALS FGRDAHGWTWASGTLLEELMPWRWPRILAALMAGVMLAVAGCIIQRLTGNPMASPEVL GISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAATLLIIMIAAGRGGFSPQRMLLAG MALSTAFTMLLMMLQASGDPRMAEVLTWLSGSTYNATGGQVTRTAIVMVILLAIVPLC RRWLTILPLGGDAARAVGMALTPSRIALLALAACLTATATMTIGPLSFVGLMAPHIAR MLGFRRTMPHMVISALAGGVLLVFADWCGRMALFPYQIPAGLLSSFIGAPYFIYLLRK QSR" gene 230647..231218 /gene="stfA" /locus_tag="STM0195" /db_xref="GeneID:1251713" regulatory 230647..230652 /regulatory_class="ribosome_binding_site" /gene="stfA" /locus_tag="STM0195" /note="putative RBS for stfA; RegulonDB:STMS1H000568" CDS 230658..231218 /gene="stfA" /locus_tag="STM0195" /note="major fimbrial subunit StfA (gi|3747029)" /codon_start=1 /transl_table=11 /product="fimbrial protein" /protein_id="NP_459200.1" /db_xref="GI:16763585" /db_xref="GeneID:1251713" /translation="MNTAVKAAVAAALVMGVSSFANAAGSNTGTVTFTGTIEDSPCSI VVGDEHQTVNLGHIGTGSLMGGKESSKVDFHIGLENCAFTTEKEASTVFSAIGNESSA NPGSVALMRIGGGEMAGSSIVIGNHLGSAIKLGDAYSENLTMNGSVAAAKQTLNFKAW VKGDSAATTIDTGEFSSTVNFTISYL" gene 231287..233961 /gene="stfC" /locus_tag="STM0196" /db_xref="GeneID:1251714" regulatory 231287..231292 /regulatory_class="ribosome_binding_site" /gene="stfC" /locus_tag="STM0196" /note="putative RBS for stfC; RegulonDB:STMS1H000569" CDS 231304..233961 /gene="stfC" /locus_tag="STM0196" /note="outer membrane usher protein StfC (gi|3747030)" /codon_start=1 /transl_table=11 /product="outer membrane usher protein" /protein_id="NP_459201.1" /db_xref="GI:16763586" /db_xref="GeneID:1251714" /translation="MAHYKKFRLSTLAAVVGIVLAVGPENSYAEAPIQFNTRFLDVKD DASLDLSRFSRKGYIMPGSYHLQVLVNQSQIVQDNVITYSVDNNDPDNTYPCLSPELV SLLGLKPEIADKMIWINAGQCLQPDQLEGMETQTDLSQSTLTVIIPQAYLEYSDEEWD PPSRWDEGIPGVLFDYNVNSQWRHAEHDDGDEYDISGNGTVGANLGAWRLRADWQANY RHENDSEDKDNFGSSSEQNWDWNRYYAWRAIPQLRAQLTLGEGSLESDIFDGFNYVGG SLITDDQMLPPNLRGYAPDISGVARTNAKVTVTQRGRVIYESQVPAGPFRIQDINETV SGDLHVKIEEQSGQVQEYDVSTASIPFLTRPGQVRYKLAAGRPQDWDHNMEGGFFTSA EASWGIANGWSLYGGAIGEQDYQALALGLGRDLALLGAFSVDVTHSRATLPEGSAYGD GTIQGNSFRASYAKDFDDIDSRLTFAGYRFSEENYMTMDEFIDTHNDDNDRQRTGHDK EMYTLTYSQNFSAINVNAYINYTHRTYWNQPNQDSYNLTLSHYFDVGEVRGISLSVNG FRNEYDNERDDGVYVSLSIPWGNNRTLSYNGSFSDDNNSNQVGYYERIDDRNNYQINA GRADNGATLDGYYRYQASYADIDVSANYQEGDYTSGGLNIQGGATLTAKGGALHRTSV NGGSRLLVDVGDEANVPISGYSTPVYTNAFGKAVIVDVNDYYRNQVKIDITQLPEDAE AILSIAQATLTEGAIGYRRMEVLSGKKAMASIRLRDGGTPPFGAEVYNSRQQQLGIVG EDGSVYLIGINPGERLQVTWEGKTQCEATLPDPLPGDLFSGLLLPCIGDASSPEATQP EEKPLLQLHTQRRTSSTQPEALSSRYPTH" gene 233964..234731 /gene="stfD" /locus_tag="STM0197" /db_xref="GeneID:1251715" regulatory 233964..233969 /regulatory_class="ribosome_binding_site" /gene="stfD" /locus_tag="STM0197" /note="putative RBS for stfD; RegulonDB:STMS1H000570" CDS 233979..234731 /gene="stfD" /locus_tag="STM0197" /note="periplasmic fimbrial chaperone StfD (gi|3747031)" /codon_start=1 /transl_table=11 /product="fimbrial protein" /protein_id="NP_459202.1" /db_xref="GI:16763587" /db_xref="GeneID:1251715" /translation="MMSLKRYNLAAVLLLLLGGYGSAQAAIAPDRTRLVFRGEDKSIS VDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASL PQDRETLFYYNVREIPPQSDKPNTLQIALQTRIKVFYRPQALSKIDMQHPWQYKITLQ RQGNGYQVSNTTGYYVVLSNASNRMDGTPARGFSPLVIAPKSNVTLGGDASELGHSPV LTYVNDYGARLPLIFNCTDNSCAVDEAKSRKS" gene 234737..235262 /gene="stfE" /locus_tag="STM0198" /db_xref="GeneID:1251716" regulatory 234737..234742 /regulatory_class="ribosome_binding_site" /gene="stfE" /locus_tag="STM0198" /note="putative RBS for stfE; RegulonDB:STMS1H000571" CDS 234750..235262 /gene="stfE" /locus_tag="STM0198" /note="minor fimbrial subunit StfE (gi|3747032)" /codon_start=1 /transl_table=11 /product="fimbrial protein" /protein_id="NP_459203.1" /db_xref="GI:16763588" /db_xref="GeneID:1251716" /translation="MRQWRLRLGTVTCAAMLSAVSMPLAAGSKTVNMTLTIVVNAAPP CTVTGGEVEFGNVLTTKVDGVNYRQAVGYRLSCNGRVSDYLKLQIQGNAVTINGESVL QTDVDGLGIRLQTATDGALISPGNTQWLSFQYSGGSGPAIEAIPVKNNGVTLTGGAFN AGATLVVDYQ" gene 235245..235735 /gene="stfF" /locus_tag="STM0199" /db_xref="GeneID:1251717" regulatory 235245..235250 /regulatory_class="ribosome_binding_site" /gene="stfF" /locus_tag="STM0199" /note="putative RBS for stfF; RegulonDB:STMS1H000572" CDS 235259..235735 /gene="stfF" /locus_tag="STM0199" /note="minor fimbrial subunit StfF (gi|3747033)" /codon_start=1 /transl_table=11 /product="fimbrial protein" /protein_id="NP_459204.1" /db_xref="GI:16763589" /db_xref="GeneID:1251717" /translation="MKKIVLTMLMGGSLAAQAADNLKFHGTLISPPNCTINNDQTIDV KFGNLLINKIDGTRYAQNVPYEITCDSTVRDETMAMTLTLSGSVSDFNPAAVNTSVAG LGIELRQNDQPFTLGSTITVNEQSIPVLKAIPVKKSGASLKEGGFDATATLQVDYQ" gene 235718..236265 /gene="stfG" /locus_tag="STM0200" /db_xref="GeneID:1251718" regulatory 235718..235723 /regulatory_class="ribosome_binding_site" /gene="stfF" /locus_tag="STM0199" /note="putative RBS for stfG; RegulonDB:STMS1H000573" CDS 235735..236265 /gene="stfG" /locus_tag="STM0200" /note="putative adhesin; minor fimbrial subunit StfG (gi|3747034)" /codon_start=1 /transl_table=11 /product="fimbrial protein" /protein_id="NP_459205.1" /db_xref="GI:16763590" /db_xref="GeneID:1251718" /translation="MAKRQALLHGAACILCGALILPVSAADNLHFSGSLVASPCTLTM QGTGIAEVDFSSLDSSDFTPDGQSARKPLVFELTDCDSALSNGVQVTFTGTEATGMRG ILAIDSYSGASGIGIGIETLSGVPVGMNDKEGAIFTLVTGKNTLNLNAWVQRLPGEDL IPGRFSASALATFEYL" gene 236265..237104 /locus_tag="STM0201" /db_xref="GeneID:1251719" CDS 236265..237104 /locus_tag="STM0201" /note="hypothetical 30.2 da protein in stfG 3'region precursor. (SW:YADU_SALTY)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459206.1" /db_xref="GI:16763591" /db_xref="GeneID:1251719" /translation="MKIIRTLFLLLIAVYGSSVVAKPMLKATFSSTTMYYGIGPNSDK SIVAEVTIATPEGVYYGSWNLSGHRKGETLTADSWSGPEPAPKVVLKDFDNTVSRSAC KNLPSNWRGCGSFTLEITVQSDDYGCPWLASSHIVATTFITNETYSPPDTRSSVCPKV PVDTFDISWDANVSKQKTTLMLDATGGTVNRTLHTYLMEGGKLCDGSKFDNRGAYCRF VSSGITLNVLGCDQSSVTTSAVDHPITDVELHDINVAVNTRNIGSGQFTSTCSFQYII DEL" gene complement(237212..238505) /gene="hemL" /locus_tag="STM0202" /db_xref="GeneID:1251720" CDS complement(237212..238492) /gene="hemL" /locus_tag="STM0202" /EC_number="5.4.3.8" /note="glutamate-1-semialdehyde 2,1-aminomutase. (SW:GSA_SALTY)" /codon_start=1 /transl_table=11 /product="glutamate-1-semialdehyde-2,1-aminomutase" /protein_id="NP_459207.1" /db_xref="GI:16763592" /db_xref="GeneID:1251720" /translation="MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYL YDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAELVTNL VPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTL GQPNSPGVPADFAKHTLTCTYNDLTSVRAAFEQYPQEIASIIVEPVAGNMNCVPPLPE FLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAF GGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGIHETLDELTTRLAEG LCEAAQEAGIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHLMLEEGVY LAPSAFEAGFMSVAHSMDDINNTIDAARRVFAKL" regulatory complement(238500..238505) /regulatory_class="ribosome_binding_site" /gene="hemL" /locus_tag="STM0202" /note="putative RBS for hemL; RegulonDB:STMS1H000574" gene 238662..240083 /gene="yadQ" /locus_tag="STM0203" /db_xref="GeneID:1251721" CDS 238662..240083 /gene="yadQ" /locus_tag="STM0203" /note="similar to E. coli putative channel transporter (AAC73266.1); Blastp hit to AAC73266.1 (473 aa), 78% identity in aa 1 - 473" /codon_start=1 /transl_table=11 /product="chloride channel protein" /protein_id="NP_459208.1" /db_xref="GI:16763593" /db_xref="GeneID:1251721" /translation="MKTDTSTFLAQQIVRLRRRDQIRRLMQRDKTPLAILFMAAVVGT LTGLVGVAFEKAVSWVQNMRIGALVQVADHAFLLWPLAFILSALLAMVGYFLVRKFAP EAGGSGIPEIEGALEELRPVRWWRVLPVKFIGGMGTLGAGMVLGREGPTVQIGGNLGR MVLDVFRMRSAEARHTLLATGAAAGLSAAFNAPLAGILFIIEEMRPQFRYNLISIKAV FTGVIMSSIVFRIFNGEAPIIEVGKLSDAPVNTLWLYLILGIIFGCVGPVFNSLVLRT QDMFQRFHGGEIKKWVLMGGAIGGLCGILGLIEPAAAGGGFNLIPIAAAGNFSVGLLL FIFITRVVTTLLCFSSGAPGGIFAPMLALGTLLGTAFGMAAAVLFPQYHLEAGTFAIA GMGALMAASVRAPLTGIVLVLEMTDNYQLILPMIITCLGATLLAQFLGGKPLYSTILA RTLAKQDAEQAEKNQNAPADENT" gene 240120..240509 /gene="yadR" /locus_tag="STM0204" /db_xref="GeneID:1251722" CDS 240120..240509 /gene="yadR" /locus_tag="STM0204" /note="similar to E. coli orf, hypothetical protein (AAC73267.1); Blastp hit to AAC73267.1 (114 aa), 99% identity in aa 1 - 114" /codon_start=1 /transl_table=11 /product="putative HesB-like domain protein" /protein_id="NP_459209.3" /db_xref="GI:1109557572" /db_xref="GeneID:1251722" /translation="MGENLSNYRCRLEQNMSDDVALPLQFTDAAANKVKSLIADEDNP NLKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYT EGLEGSRFIVTNPNAKSTCGCGSSFSI" gene complement(240610..241247) /gene="yadS" /locus_tag="STM0205" /db_xref="GeneID:1251723" CDS complement(240610..241233) /gene="yadS" /locus_tag="STM0205" /note="similar to E. coli orf, hypothetical protein (AAC73268.1); Blastp hit to AAC73268.1 (207 aa), 96% identity in aa 1 - 207" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459210.1" /db_xref="GI:16763595" /db_xref="GeneID:1251723" /translation="MLVYWLDIVGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGG TIRDMALDNGPVFWVKDPTDLVVAMVTSMLTILLVRQPRRLPKWMLPVLDAVGLAVFV GIGVNKAFLAETGPLVAVCMGVITGVGGGIIRDVLAREIPMILRTEIYATACIIGGIV HATAFYTFSVPLESASMMGMVVTLFIRLAAIRWHLKLPTFALDENGR" regulatory complement(241242..241247) /regulatory_class="ribosome_binding_site" /gene="yadS" /locus_tag="STM0205" /note="putative RBS for yadS; RegulonDB:STMS1H000575" gene complement(241270..242077) /gene="btuF" /locus_tag="STM0206" /db_xref="GeneID:1251724" CDS complement(241270..242070) /gene="btuF" /locus_tag="STM0206" /note="similar to E. coli orf, hypothetical protein (AAC73269.1); Blastp hit to AAC73269.1 (266 aa), 81% identity in aa 1 - 266" /codon_start=1 /transl_table=11 /product="vitamin B12 ABC transporter substrate-binding protein BtuF" /protein_id="NP_459211.1" /db_xref="GI:16763596" /db_xref="GeneID:1251724" /translation="MAKQMFRALVALLLTLPVWLYAAPRVITLSPANTELAFAAGITP VGVSSYSDYPPEAQKIEQVSTWQGMNLERIVALKPDLVVAWRGGNAERQVNQLTSLGI KVMWVDAVTIEQIADTLRQLAAWSPQPEKAQQAAQTLLNEYAALNAEYAGKAKKRVFL QFGMNPLFTSGKGSIQHQVLTTCGGENVFADSRVPWPQVSREQVLARHPQAIIVAGKA GEILKIEQYWGNLLKIPVIPLNSDWFERASPRIILAAKQLCNALSQVN" gene complement(242063..242761) /gene="pfs" /locus_tag="STM0207" /db_xref="GeneID:1251725" CDS complement(242063..242761) /gene="pfs" /locus_tag="STM0207" /EC_number="3.2.2.16" /EC_number="3.2.2.9" /note="similar to E. coli orf, hypothetical protein (AAC73270.1); Blastp hit to AAC73270.1 (232 aa), 96% identity in aa 1 - 232" /codon_start=1 /transl_table=11 /product="5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase" /protein_id="NP_459212.1" /db_xref="GI:16763597" /db_xref="GeneID:1251725" /translation="MKIGIIGAMEEEVTLLRDKIDNRQTITLGGCEIYTGQLNGTEVA LLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLASTLKVGDIVVSDEARYHDADV TAFGYEYGQLPGCPAGFKADDKLIAAAESCIRELNLNAVRGLIVSGDAFINGSVGLAK IRHNFPDAVAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQS TLMVETLVQKLAHG" regulatory complement(242072..242077) /regulatory_class="ribosome_binding_site" /gene="pfs" /locus_tag="STM0207" /note="putative RBS for btuF; RegulonDB:STMS1H000576" gene 242840..244363 /gene="dgt" /locus_tag="STM0208" /db_xref="GeneID:1251726" regulatory 242840..242845 /regulatory_class="ribosome_binding_site" /gene="dgt" /locus_tag="STM0208" /note="putative RBS for dgt; RegulonDB:STMS1H000577" CDS 242846..244363 /gene="dgt" /locus_tag="STM0208" /EC_number="3.1.5.1" /note="deoxyguanosinetriphosphate triphosphohydrolase. (SW:DGTP_SALTY)" /codon_start=1 /transl_table=11 /product="dGTPase" /protein_id="NP_459213.1" /db_xref="GI:16763598" /db_xref="GeneID:1251726" /translation="MASIDFRNKINWHRRYRSPQGVKTEHEILRIFESDRGRIINSPA IRRLQQKTQVFPLERNAAVRTRLTHSMEVQQVGRYIAKEILSRLKEQDRLEEYGLDAL TGPFESIVEMACLMHDIGNPPFGHFGEAAINDWFRQRLHPEDAESQPLTHDRCVVSSL RLQEGEENLNDIRRKVRQDICHFEGNAQGIRLVHTLMRMNLTWAQVGGILKYTRPAWW RGPVPDSHRYLMKKPGYYLSEEKYIARLRKELQLAPYSRFPLTWIMEAADDISYCVAD LEDAVEKRIFSVEQLYHHLYHAWCHHEKDSLFELVVGNAWEKSRANTLSRSTEDQFFM YLRVNTLNKLVPYAAQRFIDNLPQIFAGTFNQALLEDASGFSRLLELYKNVAVEHVFS HPDVEQLELQGYRVISGLLDIYQPLLSLSLNDFRELVEKERLKRFPIESRLFQKLSTR HRLAYVEVVSKLPTDSAEYPVLEYYYRCRLIQDYISGMTDLYAWDEYRRLMAVEQ" gene 244493..245920 /gene="htrA" /locus_tag="STM0209" /db_xref="GeneID:1251727" CDS 244493..245920 /gene="htrA" /locus_tag="STM0209" /EC_number="3.4.21.-" /note="protease DO precursor. (SW:DEGP_SALTY)" /codon_start=1 /transl_table=11 /product="serine endoprotease" /protein_id="NP_459214.1" /db_xref="GI:16763599" /db_xref="GeneID:1251727" /translation="MKKTTLAMSALALSLGLALSPLSATAAETSSSAMTAQQMPSLAP MLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQDGSPFQNSPFCQGGGNG GNGGQQQKFMALGSGVIIDAAKGYVVTNNHVVDNASVIKVQLSDGRKFDAKVVGKDPR SDIALIQIQNPKNLTAIKLADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLN VENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKN LTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVMPNSSAAKAGIKAG DVITSLNGKPISSFAALRAQVGTMPVGSKISLGLLREGKAITVNLELQQSSQSQVDSS TIFSGIEGAEMSNKGQDKGVVVSSVKANSPAAQIGLKKGDVIIGANQQPVKNIAELRK ILDSKPSVLALNIQRGDSSIYLLMQ" gene 246061..247230 /gene="cdaR" /locus_tag="STM0210" /db_xref="GeneID:1251728" regulatory 246061..246066 /regulatory_class="ribosome_binding_site" /gene="cdaR" /locus_tag="STM0210" /note="putative RBS for cdaR; RegulonDB:STMS1H000578" CDS 246073..247230 /gene="cdaR" /locus_tag="STM0210" /note="similar to E. coli orf, hypothetical protein (AAC73273.1); Blastp hit to AAC73273.1 (391 aa), 95% identity in aa 7 - 391" /codon_start=1 /transl_table=11 /product="carbohydrate diacid regulon transcriptional regulator CdaR" /protein_id="NP_459215.1" /db_xref="GI:16763600" /db_xref="GeneID:1251728" /translation="MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERI GELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPEHLR KYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALVEWAQRLGIDL NQPRVAAVVEVDSGQLGVDSAMAELQQLQNALTTPERNNLIAIVSLTEMVVLKPALNS FGRWDAEDHRKRVEQLISRMKENGQLRFRVALGNYFTGPGSIARSYRTARTTMMVGKQ RMPESRSYFYQDLMLPVLLDSLRGGWQANELARPLVKLKAMDNNGLLRRTLTAWFRHN VQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEQR" gene complement(247319..247717) /gene="yaeH" /locus_tag="STM0211" /db_xref="GeneID:1251729" CDS complement(247319..247705) /gene="yaeH" /locus_tag="STM0211" /note="similar to E. coli putative structural protein (AAC73274.1); Blastp hit to AAC73274.1 (128 aa), 95% identity in aa 1 - 128" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459216.1" /db_xref="GI:16763601" /db_xref="GeneID:1251729" /translation="MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDRGEFFAK SVKFKYPRQRKTVVADGIGQGYKEVQEISPNLRYVIDELDQICQRDRSELDLKRKILD DLRHLESVVANKISEIEADLDKLTRK" regulatory complement(247712..247717) /regulatory_class="ribosome_binding_site" /gene="yaeH" /locus_tag="STM0211" /note="putative RBS for yaeH; RegulonDB:STMS1H000579" gene 247943..249253 /locus_tag="STM0212" /db_xref="GeneID:1251730" regulatory 247943..247948 /regulatory_class="ribosome_binding_site" /locus_tag="STM0212" /note="putative RBS for STM0212; RegulonDB:STMS1H000580" CDS 247952..249253 /locus_tag="STM0212" /note="similar to E. coli putative transport protein, shikimate (AAC75045.1); Blastp hit to AAC75045.1 (438 aa), 40% identity in aa 13 - 435" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_459217.1" /db_xref="GI:16763602" /db_xref="GeneID:1251730" /translation="MSGTYNATIRRVVVSAWIGNSIEYYDFLLYGLASALVFGPLFFP GASPLTATLSSFASFGVGFISRPLGALFFGNRGDTLGRKNTLLITLGGMGAVTFLIGC LPSYASIGALAPALLVILRFLQGFMVGGEWGGAMLMVVEYAAGKHRGRLSALSQTGGL TGQLLATGVFIVVTQLPQEALLSWGWRIPFLLSALLVLPGLYMRHRLDETPVFRAFKK QQAINHRQQREERPVVKVVREQWRSILLIIILRFAESVPFFLATVFAVSWATTQLGIA SLTILYIVMFTCLLAYPMHVLFGIMSDRRGCRQVYIFGALFVAAMAFPFFWLLESRSL ILMTMGYVLLINIGHNSLNAVQPSFFAGLFHPPVRYSGSSIGAQLGAVVAGGFTPFIA KALSAVYDNSWALVAGYVVLTALASAFAAKIAPETVLPHSP" gene complement(249290..250114) /gene="dapD" /locus_tag="STM0213" /db_xref="GeneID:1251731" CDS complement(249290..250114) /gene="dapD" /locus_tag="STM0213" /EC_number="2.3.1.117" /note="similar to E. coli 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (AAC73277.1); Blastp hit to AAC73277.1 (274 aa), 97% identity in aa 1 - 274" /codon_start=1 /transl_table=11 /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase" /protein_id="NP_459218.1" /db_xref="GI:16763603" /db_xref="GeneID:1251731" /translation="MQQLQNVIETAFERRADITPANVDTVTREAVNQVISLLDSGALR VAEKIDGQWVTHQWLKKAVLLSFRINDNQVIDGAESRYFDKVPMKFADYDEARFQKEG FRVVPPAAVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSG GVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTKIYDRE TGEVHYGRVPAGSVVVSGNLPSKDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID" gene complement(250144..252825) /gene="glnD" /locus_tag="STM0214" /db_xref="GeneID:1251732" CDS complement(250144..252816) /gene="glnD" /locus_tag="STM0214" /EC_number="2.7.7.59" /note="[protein-PII] uridylyltransferase. (SW:GLND_SALTY)" /codon_start=1 /transl_table=11 /product="[protein-PII] uridylyltransferase" /protein_id="NP_459219.1" /db_xref="GI:16763604" /db_xref="GeneID:1251732" /translation="MNTLPEQHANTALPTLPDQPQNPGVWPRAELTVAGIKARIDIFQ HWLGEAFDSGICAEQLIEARTEFIDQLLQRLWIEAGFGQIADLALVAVGGYGRGELHP LSDIDLLILSRKKLPDEQAQKVGELLTLLWDVKLDVGHSVRTLEECLLEGLSDLTVAT NLIETRLLIGDVALFLALQKHIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPD IKSSPGGLRDIHTLQWVARRHFGATSLDEMVGFGFLTPAERAELNECLHILWRIRFAL HLVVSRYDNRLLFDRQLSVAQRLNYSGEGNDPVERMMKDYFRVTRRVSELNQMLLQLF DEAILALPADEKPRPVDDEFQLRGTLIDLRDDTLFIREPQAILRMFYMMVRNSAITGI YSTTLRHLRHARRHLSQPLCYIPEARTLFLSMLRHPGAVSRGLLPMHRHSVLWAYMPQ WSHIVGQMQFDLFHAYTVDEHTIRVMLKLESFAKEETRQRHPLCVDLWPRLPHPELIL IAALFHDIAKGRGGDHSVLGAQDVLTFAELHGLNSRETQLVAWLVRQHLLMSVTAQRR DIQDPEVIKQFAEEVQTETRLRFLVCLTVADICATNETLWNSWKQSLLRELYFATEKQ LRRGMQNTPDMRERVRHHQLQALALLRMDNIDEAALHKIWTRCRANYFVRHSPNQLAW HARHLLQHDLRQPLVLLSPQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQI FTTRDGMAMDTFIVLEPDGSPLAADRHDVIRTGLEQTITQRSWQPPQPRRQPAKLRHF TVETEVNFLPTHTDRKSFMELIALDQPGLLARVGQIFADLGISLHGARITTIGERVED LFIIATADRRALNNVLQLEVQQRLTAALNPNDKG" regulatory complement(252820..252825) /regulatory_class="ribosome_binding_site" /gene="glnD" /locus_tag="STM0214" /note="putative RBS for glnD; RegulonDB:STMS1H000581" gene complement(253053..253860) /gene="map" /locus_tag="STM0215" /db_xref="GeneID:1251733" CDS complement(253053..253847) /gene="map" /locus_tag="STM0215" /EC_number="3.4.11.18" /note="methionine aminopeptidase. (SW:AMPM_SALTY)" /codon_start=1 /transl_table=11 /product="type I methionyl aminopeptidase" /protein_id="NP_459220.1" /db_xref="GI:16763605" /db_xref="GeneID:1251733" /translation="MAISIKTSEDIEKMRVAGRLAAEVLEMIEPYIKPGVTTGELDRI CNDYIVNEQHAISACLGYHGYPKSVCISINEVVCHGIPDDAKHLKDGDIVNIDVTVIK DEFHGDTSKMFIVGKPTILGERLCRVTQESLYLGIKMVKPGIRLRTIGAAIQKYAEGE GFSVVREYCGHGIGRGFHEEPQVLHYDADDGGVVLQPGMTFTIEPMLNAGDYRIRTMK DGWTVKTKDRSLSAQYEHTIVVTENGCEILTLRKDDTIPAIITHDE" regulatory complement(253855..253860) /regulatory_class="ribosome_binding_site" /gene="map" /locus_tag="STM0215" /note="putative RBS for map; RegulonDB:STMS1H000582" gene 254285..255023 /gene="rpsB" /locus_tag="STM0216" /db_xref="GeneID:1251734" regulatory 254285..254290 /regulatory_class="ribosome_binding_site" /gene="rpsB" /locus_tag="STM0216" /note="putative RBS for rpsB; RegulonDB:STMS1H000583" CDS 254298..255023 /gene="rpsB" /locus_tag="STM0216" /note="similar to E. coli 30S ribosomal subunit protein S2 (AAC73280.1); Blastp hit to AAC73280.1 (241 aa), 97% identity in aa 1 - 241" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S2" /protein_id="NP_459221.1" /db_xref="GI:16763606" /db_xref="GeneID:1251734" /translation="MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLE KTVPMFNEALAELNKISARKGKILFVGTKRAASEAVKEAANSCDQFFVNHRWLGGMLT NWKTVRQSIKRLKDLETQSQDGTFEKLTKKEALMRTRELEKLENSLGGIKDMGGLPDA LFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVSLYLGAVA ATVREGRSQDLASQAEESFVEAE" gene 255269..256132 /gene="tsf" /locus_tag="STM0217" /db_xref="GeneID:1251735" regulatory 255269..255274 /regulatory_class="ribosome_binding_site" /gene="tsf" /locus_tag="STM0217" /note="putative RBS for tsf; RegulonDB:STMS1H000584" CDS 255281..256132 /gene="tsf" /locus_tag="STM0217" /note="similar to E. coli protein chain elongation factor EF-Ts (AAC73281.1); Blastp hit to AAC73281.1 (283 aa), 96% identity in aa 1 - 283" /codon_start=1 /transl_table=11 /product="translation elongation factor Ts" /protein_id="NP_459222.1" /db_xref="GI:16763607" /db_xref="GeneID:1251735" /translation="MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKS GAIKAAKKAGNVAADGVIKTKIDGNVAFILEVNCQTDFVAKDAGFQAFADKVLDAAVA GKITDVEVLKAQFEEERVALVAKIGENINIRRVASLEGDVLGSYQHGARIGVLVAAKG ADEELVKQLAMHVAASKPEFVKPEDVSADVVEKEYQVQLDIAMQSGKPKEIAEKMVEG RMKKFTGEVSLTGQPFVMEPSKSVGQLLKEHNADVTGFIRFEVGEGIEKVETDFAAEV AAMSKQS" gene 256265..257002 /gene="pyrH" /locus_tag="STM0218" /db_xref="GeneID:1251736" regulatory 256265..256270 /regulatory_class="ribosome_binding_site" /gene="pyrH" /locus_tag="STM0218" /note="putative RBS for pyrH; RegulonDB:STMS1H000585" CDS 256277..257002 /gene="pyrH" /locus_tag="STM0218" /EC_number="2.7.4.-" /note="similar to E. coli uridylate kinase (AAC73282.1); Blastp hit to AAC73282.1 (241 aa), 98% identity in aa 1 - 241" /codon_start=1 /transl_table=11 /product="UMP kinase" /protein_id="NP_459223.1" /db_xref="GI:16763608" /db_xref="GeneID:1251736" /translation="MATNAKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKEL VELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNA RLMSAIPLNGVCDNYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADV VLKATKVDGVFTADPAKDPSATMYDQLTYSEVLDKELKVMDLAAFTLARDHKLPIRVF NMNKPGALRRVVMGEKEGTLITE" gene 257136..257706 /gene="frr" /locus_tag="STM0219" /db_xref="GeneID:1251737" regulatory 257136..257141 /regulatory_class="ribosome_binding_site" /gene="frr" /locus_tag="STM0219" /note="putative RBS for frr; RegulonDB:STMS1H000586" CDS 257149..257706 /gene="frr" /locus_tag="STM0219" /note="similar to E. coli ribosome releasing factor (AAC73283.1); Blastp hit to AAC73283.1 (185 aa), 93% identity in aa 1 - 185" /codon_start=1 /transl_table=11 /product="ribosome recycling factor" /protein_id="NP_459224.1" /db_xref="GI:16763609" /db_xref="GeneID:1251737" /translation="MISDIRKDAEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEY YGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPL PPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEV QKMTDAAIKKVDAALADKEAELMQF" gene 257836..259043 /gene="dxr" /locus_tag="STM0220" /db_xref="GeneID:1251738" regulatory 257836..257841 /regulatory_class="ribosome_binding_site" /gene="dxr" /locus_tag="STM0220" /note="putative RBS for dxr; RegulonDB:STMS1H000587" CDS 257847..259043 /gene="dxr" /locus_tag="STM0220" /EC_number="1.1.1.-" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73284.1); Blastp hit to AAC73284.1 (398 aa), 88% identity in aa 1 - 397" /codon_start=1 /transl_table=11 /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase" /protein_id="NP_459225.1" /db_xref="GI:16763610" /db_xref="GeneID:1251738" /translation="MKQLTILGSTGSIGCSTLDVVRHNPDSFRVIALVAGKNVARMAE QCLEFSPRYAVMDDTSSAEQLKIMLQQHGSRTEVLSGQQAACEMAALDEVGHVMAAIV GAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDEVKRSNARLLPVDSEHNAIFQSL PQSIQHNLGYADLEQNGVTSILLTGSGGPFRETPMCDLAAMTPDQACRHPNWSMGRKI SVDSATMMNKGLEYIEARWLFNASARQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDM RTPIAHTMAWPNRVTSGAQPLDFCKLSALTFSAPDYQRYPCLKLAMEAFEQGQAATTA LNAANEITVAAFLAQQIRFTDIAGLNLAVLERMDLQEPASVEDVLQVDAIAREVARKQ VIRLSR" gene 259337..260114 /gene="uppS" /locus_tag="STM0221" /db_xref="GeneID:1251739" regulatory 259337..259342 /regulatory_class="ribosome_binding_site" /gene="uppS" /locus_tag="STM0221" /note="putative RBS for uppS; RegulonDB:STMS1H000588" CDS 259356..260114 /gene="uppS" /locus_tag="STM0221" /EC_number="2.5.1.31" /note="similar to E. coli orf, hypothetical protein (AAC73285.1); Blastp hit to AAC73285.1 (253 aa), 93% identity in aa 2 - 253" /codon_start=1 /transl_table=11 /product="(2E,6E)-farnesyl- diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase" /protein_id="NP_459226.1" /db_xref="GI:16763611" /db_xref="GeneID:1251739" /translation="MLSATQPVSENLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKA GAKSVRRAVSFAANNGIDALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRH NVRLRIIGDISRFNSRLQERIRKSEALTAHNTGLTLNIAANYGGRWDIVQGVRQLAEQ VQAGVLRPDQIDEERLGQQICMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDV LWPDFDEQDFEGALHAFANRERRFGGTEPGDDKA" gene 260114..260984 /gene="cdsA" /locus_tag="STM0222" /db_xref="GeneID:1251740" regulatory 260114..260119 /regulatory_class="ribosome_binding_site" /gene="cdsA" /locus_tag="STM0222" /note="putative RBS for cdsA; RegulonDB:STMS1H000589" CDS 260127..260984 /gene="cdsA" /locus_tag="STM0222" /EC_number="2.7.7.41" /note="similar to E. coli CDP-diglyceride synthetase (AAC73286.1); Blastp hit to AAC73286.1 (249 aa), 95% identity in aa 1 - 249" /codon_start=1 /transl_table=11 /product="phosphatidate cytidylyltransferase" /protein_id="NP_459227.1" /db_xref="GI:16763612" /db_xref="GeneID:1251740" /translation="MLKYRLISAFVLIPAVIAALFLLPPVGFAIITLVVCMLAAWEWG QLSGFAARSQRVWLAVLCGLLLALMLFLLPEYHHNIRQPLVEMSLWASLGWWVVALLL VLFYPGSAAIWRNSKTLRLIFGLLTIVPFFWGMLALRAWHYDENHYSGAIWLLYVMIL VWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLNVAPV ILLICSVVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFAC LLLLVFRTL" gene 260988..262348 /gene="yaeL" /locus_tag="STM0223" /db_xref="GeneID:1251741" regulatory 260988..260993 /regulatory_class="ribosome_binding_site" /gene="yaeL" /locus_tag="STM0223" /note="putative RBS for yaeL; RegulonDB:STMS1H000590" CDS 260996..262348 /gene="yaeL" /locus_tag="STM0223" /note="similar to E. coli orf, hypothetical protein (AAC73287.1); Blastp hit to AAC73287.1 (450 aa), 88% identity in aa 1 - 450" /codon_start=1 /transl_table=11 /product="RIP metalloprotease RseP" /protein_id="NP_459228.1" /db_xref="GI:16763613" /db_xref="GeneID:1251741" /translation="MLSILWNLAAFIIALGVLITVHEFGHFWVARRCGVRVERFSIGF GKALWRRTDRYGTEYVIALIPLGGYVKMLDERAEPVAPELRRHAFNNKTVGQRAAIIA AGPVANFIFAIFAYWLVFIIGVPGVRPVIGEITPNSIAAQAQIAPGTELKAVDGIETP DWDAVRLQLVSKIGDQQTTVSVAPFGSDQRQDKTLDLRHWAFEPDKQDPVSSLGIRPR GPQIEPVLSEVQANSAASKAGLQAGDRIVKVDGQPLTQWMKFVTFVRDNPGKPLALEI ERQGSALSLTLTPDTKSVNGKAEGFAGVVPKIIPLPEEYKTIRQYGPFSAILEATDKT WQLMKLTVSMLGKLITGDVKLNNLSGPISIAQGAGMSAEFGVIYYLMFLALISVNLGI INLFPLPVLDGGHLLFLAIEKLKGGPVSERVQDFSYRIGSILLVLLMGLALFNDFSRL " gene 262380..264794 /gene="yaeT" /locus_tag="STM0224" /db_xref="GeneID:1251742" CDS 262380..264794 /gene="yaeT" /locus_tag="STM0224" /note="similar to E. coli orf, hypothetical protein (AAC73288.1); Blastp hit to AAC73288.1 (810 aa), 92% identity in aa 1 - 810" /codon_start=1 /transl_table=11 /product="outer membrane protein assembly factor BamA" /protein_id="NP_459229.1" /db_xref="GI:16763614" /db_xref="GeneID:1251742" /translation="MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALL SMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGNTLLVQVKERPTIASITFSGN KSVKDDMLKQNLEASGVRVGESLDRTTLSDIEKGLEDFYYSVGKYSASVKAVVTPLPR NRVDLKLVFQEGVSAKIQQINIVGNHAFSTEELISHFQLRDEVPWWNVVGDRKYQKQK LAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGN LAGHSAEIENLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSQPEINDADKT VKLRVNVDAGNRFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRL GFFETVDTDTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWL GTGYSVGINGTKNDYQTYSELSVTNPYFTVDGVSLGGRIFYNDFQADDADLSDYTNKS YGTDVTLGFPINEYNTLRAGLGYVHNKLSNMQPQIAMDRYLESMGQSADTSSFAADDF TFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVSLDTATYVPIDNDHKWV VLGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYKNGAHTSWDDND DYEDCTQESGCKSDDAVGGNAMAVASLEFITPTPFISEKYANSVRTSFFWDMGTVWDT NWDPSSAPSDVPDYSDPGNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQF NIGKTW" gene 264905..265402 /gene="hlpA" /locus_tag="STM0225" /db_xref="GeneID:1251743" regulatory 264905..264910 /regulatory_class="ribosome_binding_site" /gene="hlpA" /locus_tag="STM0225" /note="putative RBS for hlpA; RegulonDB:STMS1H000591" CDS 264917..265402 /gene="hlpA" /locus_tag="STM0225" /note="outer membrane protein OMPH precursor. (SW:OMPH_SALTY)" /codon_start=1 /transl_table=11 /product="molecular chaperone" /protein_id="NP_459230.1" /db_xref="GI:16763615" /db_xref="GeneID:1251743" /translation="MKKWLLAAGLGLAMVTSAQAADKIAIVNMGNLFQQVAQKTGVSN TLENEFKGRAAELQKMETDLQSKMQRLQSMKAGSDRTKLEKDVMSQRQTFAQKAQAFE KDRARRSNEERNKLVTRIQTAVKKVANDQSIDLVVDANTVAYNSSDVKDITADVLKQV K" gene 265391..266431 /gene="lpxD" /locus_tag="STM0226" /db_xref="GeneID:1251744" regulatory 265391..265396 /regulatory_class="ribosome_binding_site" /gene="hlpA" /locus_tag="STM0225" /note="putative RBS for lpxD; RegulonDB:STMS1H000592" CDS 265406..266431 /gene="lpxD" /locus_tag="STM0226" /EC_number="2.3.1.-" /note="UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. (SW:LPXD_SALTY)" /codon_start=1 /transl_table=11 /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase" /protein_id="NP_459231.1" /db_xref="GI:16763616" /db_xref="GeneID:1251744" /translation="MPSIRLADLAEQLDAELHGDGDIVITGVASMQSATTGHITFMVN PKYREHLGLCQASAVVMTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAP SAVIDATATLGSNVSVGANAVIESGVQLGDNVVIGAGCFVGKNSKIGAGSRLWANVTI YHDIQIGENCLIQSSTVIGADGFGYANDRGNWVKIPQLGRVIIGDRVEIGACTTIDRG ALDDTVIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGH MEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDDMSKRLKAIE RKVNQQD" gene 266524..266992 /gene="fabZ" /locus_tag="STM0227" /db_xref="GeneID:1251745" regulatory 266524..266529 /regulatory_class="ribosome_binding_site" /gene="fabZ" /locus_tag="STM0227" /note="putative RBS for fabZ; RegulonDB:STMS1H000593" CDS 266537..266992 /gene="fabZ" /locus_tag="STM0227" /EC_number="4.2.1.-" /note="(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase. (SW:FABZ_SALTY)" /codon_start=1 /transl_table=11 /product="3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ" /protein_id="NP_459232.1" /db_xref="GI:16763617" /db_xref="GeneID:1251745" /translation="MTTNTHTLQIEEILELLPHRFPFLLVDRVLDFEEGRFLRAVKNV SVNEPFFQGHFPGKPILPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFK RPVVPGDQMIMEVTFEKTRRGLTRFKGVALVDGKVVCEATMMCARSREA" gene 266984..267784 /gene="lpxA" /locus_tag="STM0228" /db_xref="GeneID:1251746" regulatory 266984..266989 /regulatory_class="ribosome_binding_site" /gene="fabZ" /locus_tag="STM0227" /note="putative RBS for lpxA; RegulonDB:STMS1H000594" CDS 266996..267784 /gene="lpxA" /locus_tag="STM0228" /EC_number="2.3.1.129" /note="acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase. (SW:LPXA_SALTY)" /codon_start=1 /transl_table=11 /product="acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase" /protein_id="NP_459233.1" /db_xref="GI:16763618" /db_xref="GeneID:1251746" /translation="MIDKSAFIHPTAIVEDGAVIGANAHIGPFCIVGPQVEIGEGTVL KSHVVVNGQTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGT VQGGGLTKVGSDNLLMINAHVAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVH QFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSREGLVAIRNA YKLLYRSGKTLDEAKLEIAELAEKHPEVKAFTEFFERSTRGPIR" gene 267768..268932 /gene="lpxB" /locus_tag="STM0229" /db_xref="GeneID:1251747" regulatory 267768..267773 /regulatory_class="ribosome_binding_site" /gene="lpxA" /locus_tag="STM0228" /note="putative RBS for lpxB; RegulonDB:STMS1H000595" CDS 267784..268932 /gene="lpxB" /locus_tag="STM0229" /EC_number="2.4.1.182" /note="similar to E. coli tetraacyldisaccharide-1-P; lipid A biosynthesis, penultimate step (AAC73293.1); Blastp hit to AAC73293.1 (382 aa), 94% identity in aa 1 - 382" /codon_start=1 /transl_table=11 /product="lipid-A-disaccharide synthase" /protein_id="NP_459234.1" /db_xref="GI:16763619" /db_xref="GeneID:1251747" /translation="MAAQRPLTIALVAGETSGDILGAGLIRALKARVPNARFVGVAGP RMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTRRFTELKPDVFVGIDAPDF NITLEGNLKKKGIKTIHYVSPSVWAWRQKRVFKIGRSTHMVLAFLPFEKAFYDKFNVP CRFIGHTMADAMPLDPDKNAARDVLGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQL LRQRYPDLEVVVPLVNAKRREQFEKIKAEVAPDLAVHLLDGMAREAMIASDAALLASG TAALECMLAKCPMVVGYRMKPFTFWLAKRLVKTEYVSLPNLLAGRELVKELLQEECEP QKLAEALLPLLANGKTSHAMHDTFRELHQQIRCNADEQAADAVLELAQ" gene 268915..269525 /gene="rnhB" /locus_tag="STM0230" /db_xref="GeneID:1251748" regulatory 268915..268920 /regulatory_class="ribosome_binding_site" /gene="rnhB" /locus_tag="STM0230" /note="putative RBS for rnhB; RegulonDB:STMS1H000596" CDS 268929..269525 /gene="rnhB" /locus_tag="STM0230" /EC_number="3.1.26.4" /note="ribonuclease HII. (SW:RNH2_SALTY)" /codon_start=1 /transl_table=11 /product="ribonuclease HII" /protein_id="NP_459235.1" /db_xref="GI:16763620" /db_xref="GeneID:1251748" /translation="MIEFVYPHTHLVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLN DSKKLSEKRRLSLYDEIKEKALSWSLGRAEAHEIDELNILHATMLAMQRAVAGLHIAP EYVLIDGNRCPELPVPSMAVVKGDSRVAEISAASILAKVTRDAEMAALDIVFPQYGFA QHKGYPTAFHLEKLAQYGATAHHRRSFAPVKRALGLVS" gene 269536..273031 /gene="dnaE" /locus_tag="STM0231" /db_xref="GeneID:1251749" regulatory 269536..269541 /regulatory_class="ribosome_binding_site" /gene="dnaE" /locus_tag="STM0231" /note="putative RBS for dnaE; RegulonDB:STMS1H000597" CDS 269549..273031 /gene="dnaE" /locus_tag="STM0231" /EC_number="2.7.7.7" /note="DNA polymerase III, alpha chain. (SW:DP3A_SALTY)" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit alpha" /protein_id="NP_459236.1" /db_xref="GI:16763621" /db_xref="GeneID:1251749" /translation="MSEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDF TNLCGLVKFYGAGHGAGIKPIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLIS KAYQRGYGAAGPIIERDWLVELKEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEA HFPDRYFLELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVA IHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEY FLPQFPTGDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQ MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFL NPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG HPYGFVDRISKLVPPDPGMTLAKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNA GKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIN WALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYG IILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGEL AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVV GLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQG GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK AEAIGQTDMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKE IERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVML FTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISL TDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDL RGLIGSEQVELEFD" gene 272938..274003 /gene="accA" /locus_tag="STM0232" /db_xref="GeneID:1251750" regulatory 272938..272946 /regulatory_class="minus_35_signal" /gene="accA" /locus_tag="STM0232" /note="putative -35_signal for accA; RegulonDB:STMLTH004537" regulatory 272964..272972 /regulatory_class="minus_10_signal" /gene="accA" /locus_tag="STM0232" /note="putative -10_signal for accA; RegulonDB:STMLTH004537" regulatory 273034..273039 /regulatory_class="ribosome_binding_site" /gene="accA" /locus_tag="STM0232" /note="putative RBS for accA; RegulonDB:STMS1H000598" CDS 273044..274003 /gene="accA" /locus_tag="STM0232" /EC_number="6.4.1.2" /note="acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha. (SW:ACCA_SALTY)" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase carboxyltransferase subunit alpha" /protein_id="NP_459237.1" /db_xref="GI:16763622" /db_xref="GeneID:1251750" /translation="MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLR EKSVELTRKIFADLGAWQVAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIV GGIARLEGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMEMAERFNMPIITF IDTPGAYPGVGAEERGQSEAIARNLREMSRLNVPVICTVIGEGGSGGALAIGVGDKVN MLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSIIPEPLGGAH RNPEAMAASLKAQLLEDLADLDVLSTDDLKNRRYQRLMSYGYA" gene 274177..275947 /locus_tag="STM0233" /db_xref="GeneID:1251751" regulatory 274177..274182 /regulatory_class="ribosome_binding_site" /locus_tag="STM0233" /note="putative RBS for STM0233; RegulonDB:STMS1H000599" CDS 274184..275947 /locus_tag="STM0233" /codon_start=1 /transl_table=11 /product="chitinase" /protein_id="NP_459238.1" /db_xref="GI:16763623" /db_xref="GeneID:1251751" /translation="MGLQKTLALSAVAAGIMLSLSGAQAAPLLSSSEPMTINASDLAA KEKALTDFPLMEAVKSSIQTLDNSAVEQIEPGRAANPANVKRVESILKEADWDYLFPM RAPEYTYSNFLKAIGKFPAVCGTYTDGRDSDAICRKTLATMFAHFAQETGGHESWRDI PEWRQALVYLREVGWTEGQKGGYNGECNPDVWQGQTWPCGKDKDGDFLSYFGRGAKQL SYNYNYGPFSDAMYGDVRPLLDKPELVADTWMNLASAVFFFVYPQPPKPSMLHVIDGT WQPNDRDKANGLVSGFGVTIQIINGGVECGGADENAQSLNRIAYYKEFANYLKVPVPA DEVLGCKKMKQFDEGGAGALPIYWEQDWGWSADTADGKTYSCQLVGYQTPYTAFKEGD YTKCVQHYFNVNVVDDNGTTEPDVTPTPAPVTDENVAPVARIAGPVGAVEAGSPVSLS AEGSTDANGDKLTYTWMSQDGKTLSGQDKAVVIFNAPDVTQNTQYVVNLTVSDGTLSS TAVYTLNVKAKAAAADDEDKTTSYPAWSSSQKWNPGDIVNSNGALYQCKPFPEGSWCN VAPAYYEPGVGIAWADAWNAL" gene 276012..278164 /gene="ldcC" /locus_tag="STM0234" /db_xref="GeneID:1251752" regulatory 276012..276017 /regulatory_class="ribosome_binding_site" /gene="ldcC" /locus_tag="STM0234" /note="putative RBS for ldcC; RegulonDB:STMS1H000600" CDS 276023..278164 /gene="ldcC" /locus_tag="STM0234" /EC_number="4.1.1.18" /note="similar to E. coli lysine decarboxylase 2, constitutive (AAC73297.1); Blastp hit to AAC73297.1 (713 aa), 91% identity in aa 1 - 712" /codon_start=1 /transl_table=11 /product="lysine decarboxylase LdcC" /protein_id="NP_459239.1" /db_xref="GI:16763624" /db_xref="GeneID:1251752" /translation="MNIIAIMGPHGVYYKDEPIKELERALQSLGFQIIWPQNSVDLLK FIEHNPRICGVIFDWDEYSLDLCSEINQLNEYLPLYAFINTNSTLDVSVHDMRMALWF FEYALGLAEDIATRIHQYTNEYLDNITPPFTKALFTYAKEGKYTFCTPGHMAGTAYQK SPPGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTN GTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIP RREFTRASIESKIEETPQAQWPVHAVITNSTYDGLLYNTNWIKQMLDVPSIHFDSAWV PYTHFHPIYQGKSGMSGDRVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEA FMMHTSTSPSYPIVASIETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDSWF FDIWQPEEVDEAECWPVTPGETWHGFTDADDDHMFLDPVKVTILTPGMDEQGNMSEEG IPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAYDLNLRV KNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRQHDLPGLMLRAFEVLPEMIMTPHQAW QRQIKGEVETVALDQLPGRVSANMILPYPPGVPLLMPGERITQQSRAVLDFLLMLCSI GQHYPGFETDIHGAKRNEDGVYQVRVLKHAC" gene 278209..278609 /gene="yaeR" /locus_tag="STM0235" /db_xref="GeneID:1251753" regulatory 278209..278214 /regulatory_class="ribosome_binding_site" /gene="yaeR" /locus_tag="STM0235" /note="putative RBS for yaeR; RegulonDB:STMS1H000601" CDS 278220..278609 /gene="yaeR" /locus_tag="STM0235" /note="similar to E. coli orf, hypothetical protein (AAC73298.1); Blastp hit to AAC73298.1 (138 aa), 88% identity in aa 10 - 138" /codon_start=1 /transl_table=11 /product="VOC family protein" /protein_id="NP_459240.1" /db_xref="GI:16763625" /db_xref="GeneID:1251753" /translation="MLGLKQVHHIAIIATDYAVSKAFYCDILGFDLLSEVWREERDSW KGDLALNGQYVIELFSFPFPPARPSRPEACGLRHLAFSVENVENAVAHLEKHQVKCEP IRIDPYTGKRFTFFNDPDGLPLELYEQ" gene 278665..279964 /gene="mesJ" /locus_tag="STM0236" /db_xref="GeneID:1251754" regulatory 278665..278670 /regulatory_class="ribosome_binding_site" /gene="mesJ" /locus_tag="STM0236" /note="putative RBS for mesJ; RegulonDB:STMS1H000602" CDS 278672..279964 /gene="mesJ" /locus_tag="STM0236" /note="similar to E. coli cell cycle protein (AAC73299.1); Blastp hit to AAC73299.1 (432 aa), 76% identity in aa 2 - 427" /codon_start=1 /transl_table=11 /product="tRNA lysidine(34) synthetase TilS" /protein_id="NP_459241.1" /db_xref="GI:16763626" /db_xref="GeneID:1251754" /translation="MTTLTLNTSLLSSRRILAAFSGGLDSTVLLHQLVLWRERHPDVT LRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVERVTLADNGLGIEAHAREARYRAF AQTLLPGEVLATAQHLDDQCETFLLALKRGSGPAGLSAMGERSPFAGTLLLRPLLRET RKTLEQWAVRHGLCWIEDESNQDDAYDRNFLRLRALPLLQQRWPHFPAAVARSATLCA EQERLLDELLASDLTDCITAEGTLRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDAL ERIWQEVALARDDASPCLRFGDHEIRRYQSQLWWIKSVAGQHETTVAWPVWQTPLALP AGLGTVQLVPGGELRRPREEESVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRR DTTPLLFYGETLIAAAGVFVTREGAAEDKEGVSLVWHA" gene complement(280048..280321) /gene="rof" /locus_tag="STM0237" /db_xref="GeneID:1251755" CDS complement(280048..280308) /gene="rof" /locus_tag="STM0237" /note="similar to E. coli orf, hypothetical protein (AAC73300.1); Blastp hit to AAC73300.1 (86 aa), 81% identity in aa 1 - 86" /codon_start=1 /transl_table=11 /product="Rho-binding antiterminator" /protein_id="NP_459242.1" /db_xref="GI:16763627" /db_xref="GeneID:1251755" /translation="MSMNETYQPINCDDYDSLELACMHHLILTLTLKDGEVLQAKAND LILRKNVEYLLAEVSGESCELRLDKIASFSHPEIGTVVVSES" gene complement(280295..280517) /gene="yaeP" /locus_tag="STM0238" /db_xref="GeneID:1251756" CDS complement(280295..280513) /gene="yaeP" /locus_tag="STM0238" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459243.1" /db_xref="GI:16763628" /db_xref="GeneID:1251756" /translation="MLTGGHVEKYCELVRKRYAEIASGDLGYVPDALGCVLKVLNEVA ADSALSESVREKAAYAAANLLVSDYVNE" regulatory complement(280316..280321) /regulatory_class="ribosome_binding_site" /gene="yaeP" /locus_tag="STM0238" /note="putative RBS for rof; RegulonDB:STMS1H000603" regulatory complement(280512..280517) /regulatory_class="ribosome_binding_site" /gene="yaeP" /locus_tag="STM0238" /note="putative RBS for yaeP; RegulonDB:STMS1H000604" gene 280680..281238 /gene="yaeQ" /locus_tag="STM0239" /db_xref="GeneID:1251757" regulatory 280680..280685 /regulatory_class="ribosome_binding_site" /gene="yaeQ" /locus_tag="STM0239" /note="putative RBS for yaeQ; RegulonDB:STMS1H000605" CDS 280693..281238 /gene="yaeQ" /locus_tag="STM0239" /note="hypothetical 20.8 Kda protein in mesJ-cutF intergenic region. (SW:YAEQ_SALTY)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459244.1" /db_xref="GI:16763629" /db_xref="GeneID:1251757" /translation="MALKATIYKAVVNVADLDRNRFLDAALTLARHPSETQERMMLRL LAWIKYADERLQFTRGLSAEDEPEAWLRNDHLGIDLWIELGLPDERRIKKACTQASDV ALFAYNSRAAQIWWQQHQSKCAQFANLSVWYLDDGQLAQLSEFADRTMTLQATIQDGA IWLSDARNNLEIQLTAWQQPS" gene 281220..281657 /gene="yaeJ" /locus_tag="STM0240" /db_xref="GeneID:1251758" regulatory 281220..281225 /regulatory_class="ribosome_binding_site" /gene="yaeJ" /locus_tag="STM0240" /note="putative RBS for yaeJ; RegulonDB:STMS1H000606" CDS 281235..281657 /gene="yaeJ" /locus_tag="STM0240" /note="similar to E. coli orf, hypothetical protein (AAC73302.1); Blastp hit to AAC73302.1 (140 aa), 85% identity in aa 1 - 136" /codon_start=1 /transl_table=11 /product="aminoacyl-tRNA hydrolase" /protein_id="NP_459245.1" /db_xref="GI:16763630" /db_xref="GeneID:1251758" /translation="MIAISRTVSIADNELEITAIRAQGAGGQHVNKTSSAIHLRFDIR ASGLPEYYKQRLLTASHHLISDDGVIIIKAQEFRSQELNREAAIARLVAVIKELTAEQ KSRRATRPTRASKERRLSSKAQKSSVKALRGKVRRPLD" gene 281689..282394 /gene="cutF" /locus_tag="STM0241" /note="pseudogene; frameshift relative to E. coli cutF (SW:CUTF_ECOLI); copper homeostasis protein" /pseudo /db_xref="GeneID:1251759" gene complement(282468..284202) /gene="proS" /locus_tag="STM0242" /db_xref="GeneID:1251760" CDS complement(282468..284186) /gene="proS" /locus_tag="STM0242" /EC_number="6.1.1.15" /note="similar to E. coli proline tRNA synthetase (AAC73305.1); Blastp hit to AAC73305.1 (572 aa), 95% identity in aa 1 - 572" /codon_start=1 /transl_table=11 /product="proline--tRNA ligase" /protein_id="NP_459246.1" /db_xref="GI:16763631" /db_xref="GeneID:1251760" /translation="MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLP TGLRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGER PFVLGPTHEEVITDLVRNELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDA YSFHTSQESLQETYDAMYAAYSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGE DDIVFSDVSDYAANIELAEAIAPQTPRAAATQEMTLVDTPNAKTIAELVEQFNLPIEK TVKTLLVKAVKDSKSPLVALLVRGDHELNEVKAEKLPHVASPLTFATEEEIRAVINAG PGSLGPVNMPIPVIIDRTVAAMSDFAAGANIDGKHYFGINWDRDVATPVVADIRNVVA GDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCYGIGVTR VVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQGIEVL MDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIVDYL VKAIKG" regulatory complement(284197..284202) /regulatory_class="ribosome_binding_site" /gene="proS" /locus_tag="STM0242" /note="putative RBS for proS; RegulonDB:STMS1H000608" gene complement(284297..285012) /gene="yaeB" /locus_tag="STM0243" /db_xref="GeneID:1251761" CDS complement(284297..285004) /gene="yaeB" /locus_tag="STM0243" /note="similar to E. coli orf, hypothetical protein (AAC73306.1); Blastp hit to AAC73306.1 (235 aa), 89% identity in aa 1 - 235" /codon_start=1 /transl_table=11 /product="tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO" /protein_id="NP_459247.1" /db_xref="GI:16763632" /db_xref="GeneID:1251761" /translation="MSSFQFEQIGVIRSPYKEKFAVPRQPGLVKSACGELHLIAPYNQ ADAVRGLEAFSHLWVLFVFHQTMDGGWRPTVRPPRLGGNARMGVFATRSTFRPNPIGM SLVALKGIECRKESVILKLGSLDLVDGTPVVDIKPYLPFAEALPDAAASYAQQAPIAE MPVSFTAEVAQQLTTLERRYPQLRTFICDVLAQDPRPAYRKGEETGKTYAVWLHDFNV RWRVVNSGFEVFALEPR" gene complement(285001..285416) /gene="rcsF" /locus_tag="STM0244" /db_xref="GeneID:1251762" CDS complement(285001..285405) /gene="rcsF" /locus_tag="STM0244" /note="overexpression confers mucoid phenotype; increases capsule synthesis; similar to E. coli regulator in colanic acid synthesis; interacts with RcsB (AAC73307.1); Blastp hit to AAC73307.1 (134 aa), 91% identity in aa 1 - 134" /codon_start=1 /transl_table=11 /product="Rcs stress response system protein RcsF" /protein_id="NP_459248.1" /db_xref="GI:16763633" /db_xref="GeneID:1251762" /translation="MRALPICLLALMLGGCSMLSRSPVEPVQSTATPPKAEPEKPKAP RAAPVRIYTNAEDLVGKPFRDLGEVSGESCQATNQDSPPNIPTARKRMQINASKMKAN AVLLHSCEITSGTPGCYRQAVCIGSALNISAK" regulatory complement(285007..285012) /regulatory_class="ribosome_binding_site" /gene="rcsF" /locus_tag="STM0244" /note="putative RBS for yaeB; RegulonDB:STMS1H000609" regulatory complement(285411..285416) /regulatory_class="ribosome_binding_site" /gene="rcsF" /locus_tag="STM0244" /note="putative RBS for rcsF; RegulonDB:STMS1H000610" gene complement(285524..286351) /gene="yaeC" /locus_tag="STM0245" /db_xref="GeneID:1251763" CDS complement(285524..286339) /gene="yaeC" /locus_tag="STM0245" /note="similar to E. coli putative lipoprotein (AAC73308.1); Blastp hit to AAC73308.1 (271 aa), 96% identity in aa 1 - 271" /codon_start=1 /transl_table=11 /product="methionine ABC transporter substrate-binding protein MetQ" /protein_id="NP_459249.1" /db_xref="GI:16763634" /db_xref="GeneID:1251763" /translation="MAFKFKTFAAVGALIGSLALAGCGQDEKDPNHIKVGVIVGAEQQ VAEVAQKVAKEKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYK LVSVGKTFVYPIAGYSKKIKSLDELKDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDG VGLLPTSLDIVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGI FVEDKDSPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKVFNGGAVKGW" regulatory complement(286346..286351) /regulatory_class="ribosome_binding_site" /gene="yaeC" /locus_tag="STM0245" /note="putative RBS for yaeC; RegulonDB:STMS1H000611" gene complement(286378..287044) /gene="yaeE" /locus_tag="STM0246" /db_xref="GeneID:1251764" CDS complement(286378..287031) /gene="yaeE" /locus_tag="STM0246" /note="similar to E. coli putative transport system permease protein (AAC73309.1); Blastp hit to AAC73309.1 (217 aa), 93% identity in aa 1 - 217" /codon_start=1 /transl_table=11 /product="DL-methionine transporter permease subunit" /protein_id="NP_459250.1" /db_xref="GI:16763635" /db_xref="GeneID:1251764" /translation="MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPG QIMENARLYRSLSAVVNIFRSIPFIILLVWMIPFTRIIVGTSIGLQAAIVPLTVGAAP FIARMVENALLEIPAGLIEASRAMGATPLQIVRKILLPEALPGLVNAATITLITLVGY SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVVLVYLIQLSGDRIVRAVTHK" gene complement(287024..288063) /gene="abc" /locus_tag="STM0247" /db_xref="GeneID:1251765" CDS complement(287024..288055) /gene="abc" /locus_tag="STM0247" /note="similar to E. coli ATP-binding component of a transporter (AAC73310.1); Blastp hit to AAC73310.1 (343 aa), 95% identity in aa 1 - 343" /codon_start=1 /transl_table=11 /product="D-methionine ABC transporter, ATP-binding protein" /protein_id="NP_459251.1" /db_xref="GI:16763636" /db_xref="GeneID:1251765" /translation="MIKLSNITKVFQQGTRTIQALNNVSLHVPAGQIYGVIGASGAGK STLIRCVNLLERPTEGSVQVGGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGN VALPLELDNTPKEEIKRRVTELLDLVGLGDKHDSYPANLSGGQKQRVAIARALASNPK VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE LIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQARLKASPETDSVPMLRMEFTGQ SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQEETQAAIAWLQDHH VKVEVLGYV" regulatory complement(287039..287044) /regulatory_class="ribosome_binding_site" /gene="yaeE" /locus_tag="STM0246" /note="putative RBS for yaeE; RegulonDB:STMS1H000612" regulatory complement(288058..288063) /regulatory_class="ribosome_binding_site" /gene="abc" /locus_tag="STM0247" /note="putative RBS for abc; RegulonDB:STMS1H000613" gene 288230..288811 /gene="yaeD" /locus_tag="STM0248" /db_xref="GeneID:1251766" regulatory 288230..288235 /regulatory_class="ribosome_binding_site" /gene="yaeD" /locus_tag="STM0248" /note="putative RBS for yaeD; RegulonDB:STMS1H000614" CDS 288245..288811 /gene="yaeD" /locus_tag="STM0248" /note="similar to E. coli putative phosphatase (AAC73311.1); Blastp hit to AAC73311.1 (191 aa), 94% identity in aa 1 - 188" /codon_start=1 /transl_table=11 /product="D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase" /protein_id="NP_459252.1" /db_xref="GI:16763637" /db_xref="GeneID:1251766" /translation="MAKFVPAIFLDRDGTINVDHGYVHEIDAFEFIDGVIDAMRELKK MGYALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSIEE FRQVCDCRKPHPGMLISARDFLHIDMAASYMVGDKLEDMQAAAAANVGTKVLVRTGKP VTAEAENAADWVLNSLADLPSAIKKQQK" gene 289190..290733 /gene="rrsH" /locus_tag="STM0249" /db_xref="GeneID:1251767" rRNA 289190..290733 /gene="rrsH" /locus_tag="STM0249" /product="16S ribosomal RNA" /db_xref="GeneID:1251767" gene 290801..290874 /gene="ileV" /locus_tag="STM0250" /db_xref="GeneID:1251768" tRNA 290801..290874 /gene="ileV" /locus_tag="STM0250" /product="tRNA-Ile" /db_xref="GeneID:1251768" gene 290987..291059 /gene="alaV" /locus_tag="STM0251" /db_xref="GeneID:1251769" tRNA 290987..291059 /gene="alaV" /locus_tag="STM0251" /product="tRNA-Asx" /db_xref="GeneID:1251769" gene 291245..294337 /gene="rrlH" /locus_tag="STM0252" /db_xref="GeneID:1251770" rRNA 291245..294337 /gene="rrlH" /locus_tag="STM0252" /product="23S ribosomal RNA" /db_xref="GeneID:1251770" gene 294520..294641 /gene="rrfH" /locus_tag="STM0253" /db_xref="GeneID:1251771" rRNA 294520..294641 /gene="rrfH" /locus_tag="STM0253" /product="5S ribosomal RNA" /db_xref="GeneID:1251771" gene 294839..294912 /gene="aspU" /locus_tag="STM0254" /db_xref="GeneID:1251772" tRNA 294839..294912 /gene="aspU" /locus_tag="STM0254" /product="tRNA-Val" /db_xref="GeneID:1251772" gene 295060..295873 /gene="yafB" /locus_tag="STM0255" /db_xref="GeneID:1251773" regulatory 295060..295065 /regulatory_class="ribosome_binding_site" /gene="yafB" /locus_tag="STM0255" /note="putative RBS for yafB; RegulonDB:STMS1H000620" CDS 295070..295873 /gene="yafB" /locus_tag="STM0255" /EC_number="1.1.1.-" /note="similar to E. coli putative aldose reductase (AAC73312.1); Blastp hit to AAC73312.1 (267 aa), 92% identity in aa 1 - 267" /codon_start=1 /transl_table=11 /product="2,5-didehydrogluconate reductase B" /protein_id="NP_459253.1" /db_xref="GI:16763638" /db_xref="GeneID:1251773" /translation="MTIPAFGLGTFRLKDDVVIASVKTALELGYRAVDTAQIYDNEAA VGQAIAESGVPRNELYITTKIWIENLSKDKLIPSLKESLKKLRTDYVDLTLIHWPSPG DAVSVEEFMQALLEAKKQGLTREIGISNFTIPLMEKAIAAVGADNIATNQIELSPYLQ NRKVVDWAKAHGIHITSYMTLAYGKALKDEVIARIAAKHNATPAQVILAWAMGEGYSV IPSSTRRENLASSLLAQDLHLDAEDKNAIAALDCNDRLVSPEGLAPAWD" gene complement(295894..296819) /gene="yafC" /locus_tag="STM0256" /db_xref="GeneID:1251774" CDS complement(295894..296808) /gene="yafC" /locus_tag="STM0256" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC73313.1); Blastp hit to AAC73313.1 (304 aa), 90% identity in aa 1 - 303" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_459254.1" /db_xref="GI:16763639" /db_xref="GeneID:1251774" /translation="MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMK LGVSLLNRTTRQLSLTEEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATP VMLHFLMPLIKPFRERYPEITLSLVSSETFINLIERKVDVAIRAGTLTDSSLRARPLF TSYRKIIASPDYIARFGKPETVEELKRHLCLGFSEPVSLNTWPIACSDGQLHEIKCGI SSNSGETLKQLCLNGNGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDR AVSTRIRAFIDFLSEYIRTAPAGAVKEG" regulatory complement(296814..296819) /regulatory_class="ribosome_binding_site" /gene="yafC" /locus_tag="STM0256" /note="putative RBS for yafC; RegulonDB:STMS1H000621" gene 296901..298088 /locus_tag="STM0257" /db_xref="GeneID:1251775" regulatory 296901..296906 /regulatory_class="ribosome_binding_site" /locus_tag="STM0257" /note="putative RBS for STM0257; RegulonDB:STMS1H000622" CDS 296913..298088 /locus_tag="STM0257" /note="similar to E. coli putative transport protein (AAC74729.1); Blastp hit to AAC74729.1 (389 aa), 41% identity in aa 7 - 378" /codon_start=1 /transl_table=11 /product="MFS sugar transporter" /protein_id="NP_459255.1" /db_xref="GI:16763640" /db_xref="GeneID:1251775" /translation="MPLALFALTISAFAIGTTEFVIVGLVPTIAQQLAISLPSAGMLV SIYALGVAIGAPVLTALTGRLPRKQLLVALMVLFTAGNLLAWQAPGYMTLIVARLLTG LAHGVFFSIGSTIATSLVPKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETF LAVSLLGVIALMSSQLLIPANIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFT AFTFLAPMMQDLAGFSPAAVSWILLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAAL FVLLMVFQVTASTQYAALATILVMGVFAFGNVPGLQVYVVQKAEQFTPNAVDVASGLN IAAFNIGIALGSVIGGQTVEHYGLAQTPWIGALIVLVAFLLMGVSGRLDKPVRIALE" gene 298241..299020 /gene="yafD" /locus_tag="STM0258" /db_xref="GeneID:1251776" CDS 298241..299020 /gene="yafD" /locus_tag="STM0258" /note="similar to E. coli orf, hypothetical protein (AAC73314.1); Blastp hit to AAC73314.1 (266 aa), 96% identity in aa 8 - 266" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459256.1" /db_xref="GI:16763641" /db_xref="GeneID:1251776" /translation="MRYVAGQPAERILPPGSFASIGQALPAGEPLSNEERIRILVWNI FKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFVLPQHPSG VMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNVHAVNFSLGVDVY SKQLLPIGDQIAHHSGPVIMAGDFNAWSRPRMNALYRFAREMSLRQVRFTDDQRRRAF GRPLDFVFYRGLNVNEASVLVTRASDHNPLLVEFSPGKPEQ" gene 299083..299868 /gene="yafE" /locus_tag="STM0259" /db_xref="GeneID:1251777" regulatory 299083..299088 /regulatory_class="ribosome_binding_site" /gene="yafE" /locus_tag="STM0259" /note="putative RBS for yafE; RegulonDB:STMS1H000623" CDS 299098..299868 /gene="yafE" /locus_tag="STM0259" /note="similar to E. coli putative biotin synthesis protein (AAC73315.1); Blastp hit to AAC73315.1 (207 aa), 71% identity in aa 3 - 206" /codon_start=1 /transl_table=11 /product="SAM-dependent methyltransferase" /protein_id="NP_459257.1" /db_xref="GI:16763642" /db_xref="GeneID:1251777" /translation="MTTHSHHDNVEKQFGSQANAYLHSAVHAAGRDLARLAQRLSDFS HASVLDMGCGAGHASFVAAQHANSVVAYDLSASMLEVVAGAAEERHLSNITLRQGYAE KLPFEDASFEVVISRYSAHHWHDVGQALREVNRVLKPGGVLIIMDVMSPGHPVRDIWL QTVEALRDTSHVRNYSSGEWLAMVNNAMLVTNTVITDRLSLEFRSWVTRMRTPAPLVE AIRLYQASAPVEVKRYFELQDDGSFSSDTIMLEAHKAV" gene complement(299924..301291) /gene="dniR" /locus_tag="STM0260" /db_xref="GeneID:1251778" CDS complement(299924..301291) /gene="dniR" /locus_tag="STM0260" /EC_number="3.2.1.-" /note="similar to E. coli transcriptional regulator for nitrite reductase (cytochrome c552) (AAC73316.1); Blastp hit to AAC73316.1 (452 aa), 91% identity in aa 1 - 452" /codon_start=1 /transl_table=11 /product="murein transglycosylase D" /protein_id="NP_459258.1" /db_xref="GI:16763643" /db_xref="GeneID:1251778" /translation="MKAKAILLASVLLVGCQTSQNTGNVQQHAQSLSAAGQGEAGKFT SQARWMDDGTSIAPDQDLWAFIGDELKMGIPENSRIREQKQKYLRNKSYLHDVTLRAE PYMYWIAGQVKKRNMPMELVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQT RNYDARRDVVASTTAALDMMQRLNKMFDGDWLLTVAAYNSGEGRVMRAIKANKARGKP TDFWSLSLPRETKLYVPKMLALSEILKNSKRYGVRLPTTDESRALARVRLNSPVEMAQ VADMAGMSISKLKTFNAGVKGSTLGVSGPQYVMVPKKHAEQLRESLASGEIDAVQSQL IADNTPLNSRSYKVRSGDTLSGIASRLGVSTKDLQQWNNLRGSRLKIGQSLTVGAGSS AQRLANNSDSITYRVRKGDSLSSIARRHGVNIKDVMRWNHDTDNLQPGDQLTLFVKDN STPDS" gene complement(301363..302128) /gene="gloB" /locus_tag="STM0261" /db_xref="GeneID:1251779" CDS complement(301363..302118) /gene="gloB" /locus_tag="STM0261" /EC_number="3.1.2.6" /note="similar to E. coli probable hydroxyacylglutathione hydrolase (AAC73317.1); Blastp hit to AAC73317.1 (251 aa), 78% identity in aa 1 - 251" /codon_start=1 /transl_table=11 /product="hydroxyacylglutathione hydrolase" /protein_id="NP_459259.1" /db_xref="GI:16763644" /db_xref="GeneID:1251779" /translation="MNLNSIPAFQDNYIWVLTNDEGRCVIVDPGEAAPVLKAIAEHKW MPEAIFLTHHHHDHVGGVKELLQHFPQMTVYGPAETQDKGATHLVGDGDTIRVLGEKF TLFATPGHTLGHVCYFSRPYLFCGDTLFSGGCGRLFEGTPSQMYQSLMKINSLPDDTL ICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLR TEDIDLINEINKETILQQPEARFAWLRSKKDTF" regulatory complement(302123..302128) /regulatory_class="ribosome_binding_site" /gene="gloB" /locus_tag="STM0261" /note="putative RBS for gloB; RegulonDB:STMS1H000624" gene 302140..302875 /gene="yafS" /locus_tag="STM0262" /db_xref="GeneID:1251780" regulatory 302140..302145 /regulatory_class="ribosome_binding_site" /gene="yafS" /locus_tag="STM0262" /note="putative RBS for yafS; RegulonDB:STMS1H000625" CDS 302153..302875 /gene="yafS" /locus_tag="STM0262" /note="similar to E. coli orf, hypothetical protein (AAC73318.1); Blastp hit to AAC73318.1 (246 aa), 86% identity in aa 7 - 244" /codon_start=1 /transl_table=11 /product="putative SAM-dependent methyltransferase" /protein_id="NP_459260.1" /db_xref="GI:16763645" /db_xref="GeneID:1251780" /translation="MKPARLSQTVVAPGCWGELPWGNYYREALEQQLNPWFAKMYGFH LLKIGNLSAEINSEACAVSHQVNVSSQGSPMQVLADPLHLPFADKSVDVCLLAHTLPW CTDPHRLLREADRVLIDDGWLVISGFNPLSLMGLRKLVPVLRKTPPYNSRMFTLMRQL DWLSLLNFEVLHYSRFHVLPWKKQGGRLLNTHIPALGCLQLIVARKRTIPLTLNPLRH NKSKTPIRQTVGATRQYRKPDG" gene complement(302872..303356) /gene="rnhA" /locus_tag="STM0263" /db_xref="GeneID:1251781" CDS complement(302872..303339) /gene="rnhA" /locus_tag="STM0263" /EC_number="3.1.26.4" /note="degrades RNA of DNA-RNA hybrids; ribonuclease HI. (SW:RNH_SALTY)" /codon_start=1 /transl_table=11 /product="ribonuclease HI" /protein_id="NP_459261.1" /db_xref="GI:16763646" /db_xref="GeneID:1251781" /translation="MLKQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLTTN NRMELMAAIVALEALKEHCEVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVD LWKRLDAALGQHQIKWVWVKGHAGHPENERCDELARAAAMNPTQEDSGYQAEA" regulatory complement(303351..303356) /regulatory_class="ribosome_binding_site" /gene="rnhA" /locus_tag="STM0263" /note="putative RBS for rnhA; RegulonDB:STMS1H000626" gene 303403..304134 /gene="dnaQ" /locus_tag="STM0264" /db_xref="GeneID:1251782" CDS 303403..304134 /gene="dnaQ" /locus_tag="STM0264" /EC_number="2.7.7.7" /note="3-5 exonucleolytic proofreading function; DNA polymerase III, epsilon chain. (SW:DP3E_SALTY)" /codon_start=1 /transl_table=11 /product="DNA polymerase III, epsilon subunit" /protein_id="NP_459262.1" /db_xref="GI:16763647" /db_xref="GeneID:1251782" /translation="MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLT GNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASF DIGFMDYEFGLLKRDIPKTNTFCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRT LHGALLDAQILAEVYLAMTGGQTSMTFAMEGETQRQQGEATIQRIVRQASRLRVVFAS EEELAAHESRLDLVQKKGGSCLWRA" gene 304278..304351 /gene="aspV" /locus_tag="STM0265" /db_xref="GeneID:1251783" tRNA 304278..304351 /gene="aspV" /locus_tag="STM0265" /product="tRNA-Sec" /db_xref="GeneID:1251783" gene complement(304666..305721) /locus_tag="STM0266" /db_xref="GeneID:1251784" CDS complement(304666..305721) /locus_tag="STM0266" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459263.1" /db_xref="GI:16763648" /db_xref="GeneID:1251784" /translation="MDMSLTKPVSAEQPCGPDPEYDPEYLLLFSRAAPQAEAQYGDFV STPEAVNWPEIERDARRLLTRSKDIRVLILLLRSRIQQAGAQGLAEMLTQLAELSVIW SDALHPQLLTGEGASAESIEDASLARSNALAALLDHEGVMADIRGITLSNSAALRLQV RDVERALSAPRPADALAPESVRQQLADLEARGALPLAAFREAQESAERLQVWARETLG DLAPDFSRLRQLLALLPDVVQTTTPEIPPSPAPVPDPAGTVMDNAVPARAEDVPPVNA PPGISLPHNAEPGPIRDRNDALERLRCIRRWFESSEPSSPTIPLLRQAERLVGKRFSE VINEIPVELLEKWDALE" gene complement(305732..306732) /locus_tag="STM0267" /db_xref="GeneID:1251785" CDS complement(305732..306727) /locus_tag="STM0267" /codon_start=1 /transl_table=11 /product="sciB domain protein" /protein_id="NP_459264.1" /db_xref="GI:16763649" /db_xref="GeneID:1251785" /translation="MTGALNQAQKTPWRYGFLNLMRRVDAQLCDTPAGSIWQPRMEKF RLGQTPTMTFAPREIAQVSWQDGRLHLSLYSLGLWGPNGPLPLHYTELALNRSESRHD PTLVHFSNIFHHRWLTQFWQAWRSAQSAGGGLDKPEHDRFAFYIASLSGQDLRESAES PLSDHVRLAASAHLVRESRNPDGLAATLAHYFSVPFAVKEFALHWITVANDEITRLGT PAQSSVLGNGALIGQAVPDMQYKFRLIIGPLTLEDYLRFLPGGNNLPVLTELVRTFIG FEYCWEIELQLKPHAAPPAVIGGAQRLGWTAWAGKAMHDRPVTGMIFEPEHGLTH" gene complement(306724..308613) /locus_tag="STM0268" /db_xref="GeneID:1251786" CDS complement(306724..308607) /locus_tag="STM0268" /codon_start=1 /transl_table=11 /product="type VI secretion protein" /protein_id="NP_459265.1" /db_xref="GI:16763650" /db_xref="GeneID:1251786" /translation="MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADP YVERMIEAFSFLSARTQLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEG DLAKGVTVPRDTAFVSPIPEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHR YLPPNIHVAGALRITLRTFGELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVAT LAGEPGHFDGELNVNLQHPVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFF TPTGLSAGLQKVQGNVAEIVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRI EVTHSVTEQHLVVDRTRPLDYEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGR YFSLRREPRRSSENARRYGTRTPYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRD LPCLIPRNGRDDLTVDAAIPVAGVGLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLA DLDHRTGGQALRDLLNLFIPAHDSPQSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVS CELTVDEEGFSGISPYLFGLVLEHYIARHVSINTFSQMTLHSMQRGHVMTWPVRTGQR GSV" regulatory complement(306727..306732) /regulatory_class="ribosome_binding_site" /locus_tag="STM0267" /note="putative RBS for STM0267; RegulonDB:STMS1H000628" regulatory complement(308608..308613) /regulatory_class="ribosome_binding_site" /locus_tag="STM0268" /note="putative RBS for STM0268; RegulonDB:STMS1H000629" gene complement(308623..309125) /locus_tag="STM0269" /db_xref="GeneID:1251787" CDS complement(308623..309117) /locus_tag="STM0269" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459266.1" /db_xref="GI:16763651" /db_xref="GeneID:1251787" /translation="MSTSRFTPANHLLPTLFDRLCDNAPYQKIDRDISVTPVQLKEII RRDLSFLLNTISHEGDIDARRYPQAAASVLNYGLPPLAGSFMYEHKWDDISEAIRRAI IRFEPRLNAATLRVTPLLDKTRQGSYNTLQFEIRGQILTQPYPTEFLVRSALDMELSR ITFF" gene complement(309114..309944) /locus_tag="STM0270" /db_xref="GeneID:1251788" CDS complement(309114..309938) /locus_tag="STM0270" /codon_start=1 /transl_table=11 /product="impE family protein" /protein_id="NP_459267.1" /db_xref="GI:16763652" /db_xref="GeneID:1251788" /translation="MKKTDTLPATLSALIQEYSIAEGIQMAEQQVRENPAKALCRHSL FQLLCVAGDWSRALHQLQLCARMEANYTQEARLYRELVRCEMFRHTVFQGEQRPGFLL PQPVWVESLLAALACHDDTGEVDKHRNTALEAITDTGGQWNGGAFDWASDSDSRLGPV LELVTGGVYIWLPFSQIRSLESPQPTRLTDLLWKPVNITLVNGDTHGAWLFTRYSGSE SASDALRLCRETAWQDGPGETTVRALGQKVWLTSHGDISLLDMAHCTFHAQENDGA" regulatory complement(309120..309125) /regulatory_class="ribosome_binding_site" /locus_tag="STM0269" /note="putative RBS for STM0269; RegulonDB:STMS1H000630" gene complement(309925..310832) /locus_tag="STM0271" /db_xref="GeneID:1251789" CDS complement(309925..310827) /locus_tag="STM0271" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459268.1" /db_xref="GI:16763653" /db_xref="GeneID:1251789" /translation="MKQDMWELRKIQSQGITDNAQYPAGTYIVFTAAAPYIPLFEQHG KDDIALSLVRHEEAWWIVNHSDELCCAVNEQVMEPHHRMRLNDGDTIEWGLSSWCLAR TNDESRPDVSFPQLVQSSESVAEYLDLDWFKQQQLNPQNPFDIIPVRETASSYTGHEA DSTLHQLYQEYQQALRPSGQEKPLRAKPFPRNEDAVTQDLTSLYDKKGDTDTLQDMVA GAPGIDAILDTLDTTGEGEMHWLAMESMPDILQLLSPELGGKTAHSEILPDLTRREHR IIGIDSHYRITPTQKNGNTAHEKN" regulatory complement(309939..309944) /regulatory_class="ribosome_binding_site" /locus_tag="STM0270" /note="putative RBS for STM0270; RegulonDB:STMS1H000631" regulatory complement(310827..310832) /regulatory_class="ribosome_binding_site" /locus_tag="STM0271" /note="putative RBS for STM0271; RegulonDB:STMS1H000632" gene 311190..313834 /locus_tag="STM0272" /db_xref="GeneID:1251790" regulatory 311190..311195 /regulatory_class="ribosome_binding_site" /locus_tag="STM0272" /note="putative RBS for STM0272; RegulonDB:STMS1H000633" CDS 311195..313834 /locus_tag="STM0272" /note="homolog of Yersinia clpB; similar to E. coli ATP-binding component of serine protease (AAC73969.1); Blastp hit to AAC73969.1 (758 aa), 42% identity in aa 150 - 449, 40% identity in aa 421 - 685, 32% identity in aa 30 - 74" /codon_start=1 /transl_table=11 /product="ClpV1 family T6SS ATPase" /protein_id="NP_459269.1" /db_xref="GI:16763654" /db_xref="GeneID:1251790" /translation="METPVSRSALYGKLAGPLFRSLESATAFCKLRSNPWVELTHWLH QLTQQPDNDILHVLRHYQIPLSDVEKALLRQLDMLPAGASAISDFSHHIDLSVEKAWM LASVRYGDNKIRSGWLLLALLTTPELRRVLSSICAPLATLPVDELTEILPSLIETSPE AQERPYDGSGLASAIPGESSQAIPNGGQDGKSALAKYCQDMTAQARDGKIDPVTGREH EIRTMTDILLRRRQNNPLLTGEAGVGKTAVVEGFALAIAQGEVPPALREVRLLALDVG ALLAGASMKGEFESRLKGLLEEAGRSPQPVILFVDEVHTLVGAGGASGTGDAANLLKP ALARGTLRTIGATTWSEYKRHIEKDPALTRRFQVLQIAEPEEIPAMEMVRGLVDTLEK HHNVLILDEAVRAAVQLSHRYIPARQLPDKAISLLDTAAARVALTLHTPPASVQFLRQ QLKAAEMERSLLQKQEKMGIQSDERRDALMARIFSLNNELTASESRWQRELELVHTLQ ELRLAESDADDKTTLQQAETALREWQGDAPVVFPEVSAAVVAAIVADWTGIPAGRMVK DEASQVLELPARLAQRVTGQDGALAQIGERIQTARAGLGDPRKPVGVFMLAGPSGVGK TETALALAEAIYGGEQNLVTINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRH PWSVVLLDEIEKAHHDVHELFYQVFDKGGMEDGEGTHVDFKNTTLLLTTNVGSDLISQ MCEDPALMPDATGLKEALMPELRKHFPAAFLGRVTVIPYLPLDETSRGVIARLHLDRL VARMSEQHGVTLTYSEELVAHIVACCPMHETGARLLIGYIEQHILPRLSRYWLQAMTE KAAIRQIDIGVNGDEQIVFEIVC" gene 313927..314476 /locus_tag="STM0273" /db_xref="GeneID:1251791" regulatory 313927..313932 /regulatory_class="ribosome_binding_site" /locus_tag="STM0273" /note="putative RBS for STM0273; RegulonDB:STMS1H000634" CDS 313934..314476 /locus_tag="STM0273" /codon_start=1 /transl_table=11 /product="type VI secretion system-associated protein" /protein_id="NP_459270.1" /db_xref="GI:16763655" /db_xref="GeneID:1251791" /translation="MAINNSAQKFIARNRAPRVQIEYDVEIYGSEKKIELPFVMAVLA DLAGKPREELPPVTDRKFLDIDIDNFNERMKAIAPRVAFAVPNTLTGEGQLMVDITLE NMDDFSPAQIARKVDALNQLLEARTQLANLQTYMDGKAGAENLVNKLLQDPTLLKTLA NAPKSAATQQDVSADNESAE" gene 314493..316008 /locus_tag="STM0274" /db_xref="GeneID:1251792" regulatory 314493..314498 /regulatory_class="ribosome_binding_site" /locus_tag="STM0274" /note="putative RBS for STM0274; RegulonDB:STMS1H000635" CDS 314500..316008 /locus_tag="STM0274" /codon_start=1 /transl_table=11 /product="EvpB family type VI secretion protein" /protein_id="NP_459271.1" /db_xref="GI:16763656" /db_xref="GeneID:1251792" /translation="MANSNMQATDAVAQDTASASGEFDALLNQAFRPKTTQAAKAVEA AVQTLAQQALANTITVSDDAYKSISAIIAQIDFKLTEQIKLILQHPDWQKLESSWRGM EHLVYNTETDEKLKIRFMNLSKDELRRNMKRYKGIAWDQSPMFKKLYEAEYGQLGGEP YGCIIADYYFDHTPPDVDLLGSIAKVAASAHAPFIAGASPSVLQMDSWQELANPRDLT KIVTQNLEYAPWNSLRASEDSRYIGLTMPRFLARLPYGAKTNPVDEFDFEEDADGSDH TKYVWSNAAYAMGVNINRSFKHYGWCTLIRGVESGGAVENLPCHTFPTDDGGVDMKCP TEIAISDRREAELAKNGFIPLIHRKNSDYAAFIGAQSLQKPQEYYDPDATANANLSAR LPYLFACSRFAHFLKCIVRDKIGSFKEREDMQRWLNEWIMNYVDADPVNSSQETKARR PLAAAEVVVEEVEGNPGYYDAKFFLRPHFQLEGLTGSLRLVTKLPSVKQGNA" gene 316071..316181 /locus_tag="STM0274A" /db_xref="GeneID:1251793" CDS 316071..316181 /locus_tag="STM0274A" /codon_start=1 /transl_table=11 /product="invasol SirA" /protein_id="NP_459272.1" /db_xref="GI:16763657" /db_xref="GeneID:1251793" /translation="MKKRISSRPRSRKGGVRNDDTYPNASNNAEAFYIIE" gene 316308..316640 /locus_tag="STM0275" /db_xref="GeneID:1251794" CDS 316308..316640 /locus_tag="STM0275" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459273.3" /db_xref="GI:1109557573" /db_xref="GeneID:1251794" /translation="MSLKSDVPAAWQLSPRYMSRLWLSSIGVTQGKPENLMDLKPETK KVNGENWSVWETERGSDKETDRYWVSCIYGHEQIWLTQPIPASSTRCKTRNFEGSPED QSVSFICN" gene 316888..317379 /locus_tag="STM0276" /db_xref="GeneID:1251795" regulatory 316888..316893 /regulatory_class="ribosome_binding_site" /locus_tag="STM0276" /note="putative RBS for STM0276; RegulonDB:STMS1H000636" CDS 316894..317379 /locus_tag="STM0276" /codon_start=1 /transl_table=11 /product="Hcp1 family type VI secretion system effector" /protein_id="NP_459274.1" /db_xref="GI:16763659" /db_xref="GeneID:1251795" /translation="MAYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGS GLGSGKVSVTNLDFDHYIDRASPNLFKYCASGKHIPQAILVMRKAGGNPLEYLKYTFT DLIVAVVSPSGSHDGEIASRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKE I" gene 317678..318169 /locus_tag="STM0277" /db_xref="GeneID:1251796" regulatory 317678..317683 /regulatory_class="ribosome_binding_site" /locus_tag="STM0277" /note="putative RBS for STM0277; RegulonDB:STMS1H000637" CDS 317684..318169 /locus_tag="STM0277" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459275.1" /db_xref="GI:16763660" /db_xref="GeneID:1251796" /translation="MNRPSFNEAWLAFRKVNHSVADVGSIIGGNVGKNITGGYFQNAC PIRMSYVLNATGFPIARNSPYAKVSGADNKFYIYRVNDMIDYLTHTMGKPDLIVNNPK QSDFIGKKGIIVVKGHGWSNARGHVTLWNGSICSDQCHLLNDPDNGPFVPEVGTLWIL P" gene 318150..318537 /locus_tag="STM0278" /db_xref="GeneID:1251797" regulatory 318150..318155 /regulatory_class="ribosome_binding_site" /locus_tag="STM0278" /note="putative RBS for STM0278; RegulonDB:STMS1H000638" CDS 318154..318537 /locus_tag="STM0278" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459276.1" /db_xref="GI:16763661" /db_xref="GeneID:1251797" /translation="MDTAVKWLILVTFSISGMLVWQPSFAQEALTTQYSQSELLKNWA LSHCLALVYKDDVVKNDARATASAYLEYGKQSVEIYHEIDEIAKKYSGLKYNGSISSD FNTMKCIDFIHDRELNELIKRRVEK" gene 318674..319165 /locus_tag="STM0279" /db_xref="GeneID:1251798" regulatory 318674..318679 /regulatory_class="ribosome_binding_site" /locus_tag="STM0279" /note="putative RBS for STM0279; RegulonDB:STMS1H000639" CDS 318680..319165 /locus_tag="STM0279" /codon_start=1 /transl_table=11 /product="Hcp1 family type VI secretion system effector" /protein_id="NP_459277.1" /db_xref="GI:16763662" /db_xref="GeneID:1251798" /translation="MSYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGS GLGSGKVSVTNLSFEHYIDRASPNLFKYCSSGKHIPQAILVMRKAGGNPLEYLKYTFT DLIIAMVSPSGSQGGEIASRESIELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKE I" gene 319225..319768 /locus_tag="STM0280" /db_xref="GeneID:1251799" regulatory 319225..319230 /regulatory_class="ribosome_binding_site" /locus_tag="STM0280" /note="putative RBS for STM0280; RegulonDB:STMS1H000640" CDS 319232..319768 /locus_tag="STM0280" /codon_start=1 /transl_table=11 /product="type VI secretion system-associated lipoprotein" /protein_id="NP_459278.1" /db_xref="GI:16763663" /db_xref="GeneID:1251799" /translation="MNEWRNPTRWLCAVAMPFALLLLSGCGSSDALPDLESQRLDLSV KASDKVNPDNQKKAAPIEIRVYELKNDAAFTTADYWSLHDNDKSVLTDDLVRRDSFIL RPGEEKKLRRPLNAQTTAIGVLAGYRNLAKSVWRVTYKIPEAPEKAWYSSFISGKGKV QLEAELEQSAIVITERDK" gene 319768..321115 /locus_tag="STM0281" /db_xref="GeneID:1251800" regulatory 319768..319773 /regulatory_class="ribosome_binding_site" /locus_tag="STM0281" /note="putative RBS for STM0281; RegulonDB:STMS1H000641" CDS 319772..321115 /locus_tag="STM0281" /codon_start=1 /transl_table=11 /product="type VI secretion system-associated protein" /protein_id="NP_459279.1" /db_xref="GI:16763664" /db_xref="GeneID:1251800" /translation="MSWNDRVVWSEGQFLLPQMFQQQERYLEHVMHYRSLPLTPFFWG FSHYNIDGEALNIGKLILKEASGIFPDGTPFNAPDHTPLPPPLTILPEHLNQQICLAV PVRAPNSEETTFDNNPESLARFSVHEHDIRDANSLGRGAQLLQLSHLRLRLLPEKAVT GAWIGLPLTRITGLNPDGRIDIDHDLIPPIINYQASSLMCTWLSWINDLIRMRADSLA ERLTGSDNHGHEAAEVSDYLLLQILNRFEPLLTHLAKTPLAPEVLYRYLSELAGELST YVRPQTRRPAEYKEYKHLTPYAGLKSLVDEVQFLLNAVLIRGAQRIELKEGTYGILNA VVAPSDLADFSTLVLAIKASMPTDVLLQHFAAQTKIGPSDRLPELIRSHLPGLALQVL PVPPRQIPFQAGYIYYDIRREGALWEHIARYGGMAMHTAGEFPGLETELWGVRDK" gene 321106..322416 /locus_tag="STM0282" /db_xref="GeneID:1251801" regulatory 321106..321111 /regulatory_class="ribosome_binding_site" /locus_tag="STM0282" /note="putative RBS for STM0282; RegulonDB:STMS1H000642" CDS 321112..322416 /locus_tag="STM0282" /note="similar to E. coli putative outer membrane protein (AAC76576.1); Blastp hit to AAC76576.1 (219 aa), 44% identity in aa 145 - 214" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459280.1" /db_xref="GI:16763665" /db_xref="GeneID:1251801" /translation="MTDSTLTPPAADMMSFLSTTPEHKDSEYETPVHTSQRTELNVIV EDGPDSKLRLAEISAAANPLLAAARPLLCALAAMPAKLDAALVEPYRNLLVREMHLYQ TLCDQANLRREHVLAVRYCLCTALDEAANNTTWGRRGVWAGKSLLVTFHGESEGGIKL FQIIGRLAASFQEHGNVLEVIYHLLGLGFEGRYSVQPDGRKQLDNIRQQLLTQLSQRR DPVMPALSPDFQGAISGRLRRMRRVPVWLSAGIALLAMLTLFGLYSHRMDVQTVTVQQ HIDAIGIKLPPPPVPVHKLRLKILLANEIARGLLTVDEDDQHSRVVFRGDAMFVPGQK TVSDAIRPVINKAAREIARVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALL TSGGVPAGRVHIVGKGDTVPVADNGSKAGRAKNRRVEILVVE" gene 322414..323194 /locus_tag="STM0283" /db_xref="GeneID:1251802" regulatory 322414..322419 /regulatory_class="ribosome_binding_site" /locus_tag="STM0283" /note="putative RBS for STM0283; RegulonDB:STMS1H000643" CDS 322421..323194 /locus_tag="STM0283" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459281.1" /db_xref="GI:16763666" /db_xref="GeneID:1251802" /translation="MMKKSTYDVSHHSAVCGVTGDYYRISATYHITRSVRVFLIILCC LLSGGAFAGSPINAGFISPDNVNLSTQDFLKFYATDNVQKKDNALMYMLGVEDATEGK AWCGYGQVDSITINHTVLTWFEQHAVKKPDVRASILIEEALVKNFPCQRTDSSIKIAS RSSPILSLTPDALNLSGNDFFKFWVSGNQRDKLRAGVYLLGVEDATENKLWCGYALFK TLTLNELVYVSLKNKTNEELNSRAAELIINKLIEYPCNI" gene 323391..323828 /locus_tag="STM0284" /db_xref="GeneID:1251803" regulatory 323391..323396 /regulatory_class="ribosome_binding_site" /locus_tag="STM0284" /note="putative RBS for STM0284; RegulonDB:STMS1H000644" CDS 323397..323828 /locus_tag="STM0284" /codon_start=1 /transl_table=11 /product="putative shiga-like toxin A subunit" /protein_id="NP_459282.1" /db_xref="GI:16763667" /db_xref="GeneID:1251803" /translation="MVCLLVGVPAISYAHDYGCATVGASMESSLFDAIKNDLNIDVAT IIKDKTKVEILDISPVSKVYAESLARMDYEKDKAKNKVAILDKKSYFDSYYENQVKSI VAKYTYINKDKEKDIFIASSFMNADECSVRFNGYITLSREF" gene 323857..327731 /locus_tag="STM0285" /db_xref="GeneID:1251804" regulatory 323857..323862 /regulatory_class="ribosome_binding_site" /locus_tag="STM0285" /note="putative RBS for STM0285; RegulonDB:STMS1H000645" CDS 323862..327731 /locus_tag="STM0285" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459283.1" /db_xref="GI:16763668" /db_xref="GeneID:1251804" /translation="MQKFLSLLFSRRALAVVGVLVLALLVWFVGPLVSFDTLRPLASV GSRVVTIALLLMLLVLWLVNWSMSIIGISVLCLAIGFVTPLLALGDVHPFAPLWVRLT LIGFILLMYALYGLYRLWRALRMDEQLLRRFLHPRGEEVPVAGEIKADLRTVNHIVTQ AIRQLRQLRVDMPGWRKIFEGKRFLYELPWFMVVGSPGDGKTTALLNTGLQFPLAEQM EQTSRILTVPGGGTLHCDWWFTNEAVLIDTAGRYARHDDGGEASAAQRNAGEWQGFLG LLRKHRPGAPLNGVILTLNVADLTAQSPAERLAACAALRARLAELRETLGIRFPVYLV VTKMDLLPGFSEYFRTLTSHLRAQIWGFTLPYSRRRKAGDPQALHAACAQELARLTLR LDQGLDTRLQEEYDLKSRQRLYTFPREFAALGEPLLEAIEQIFLDSKFDATQLNNTLR GVFFTSAAQAQADAVADQLSIWQRFVRAIKTARGESSASLPHALPDGNRSYFLHDLLT QFIFREAHLVEPNLQWAWRYRLLRLGGHLLVLVLAFLLWQGMQTSQQTNGDYLNEISA RATRLDGDVKAYTGKPAMAPVPALLDSARELSAWPELDPDAPPLAWRYGLYSVPPVTD SVASLYNRLLDQLLLPPLVKRMEYVLADAIARQDSKAAYDALRIYLLLNLDKDHEDKY NAAEIQSWVINDLGNSDSVAGFGGRAAVLTHIEALFDGSRVVHSPYEKDEALIRQARA FLDGHTSTERIYARALAAMESEAPQEFTLVRAVGADAGTVFVRSNGAPLDRGVPGIFT REGYRELFDKRLPEFVAAATANDGWVMGRESTPKKLTDSLRSQIPGQEQSVAREVRRL YLTEYARRWQDFLDSIHSINSAGEEGSSGLAYDLQVLRTLASPDSPLMRLGKAVVEQT TLVPPPDPQARQKQLAQRASGNAGKVVQTAKLFQDIHPEERLEKTLVDDRFAALREVI AGRTDGGQSGGGTMQIASLLTMLNEYYTQLTIADSALAAGTLPARITAADKLQLEAAK LPAPLKNILLDLTKQGTRKINAGTGDVLNTQMEAMMGDDCRDAIDGRYPFADSPQEVS AEDFNRIFASGGVLDAFWSKQLAPLADTASDPWRYKPTEGNMTLQGPDLTPFQQAKQI RSVFFNSEGGKKFSWSMQISVVDMDPAIMELVIDIDGQVLRYAHGPDRPLKVTWPGPR NGSMAEITASPRIRQDTSTLLTGGPWALFHLLDAGMVQETAVRGRQLVEYDFDGRRVV LEITAGRDFNPVSRELLQNFSCPARAL" gene 327726..328519 /locus_tag="STM0286" /db_xref="GeneID:1251805" regulatory 327726..327731 /regulatory_class="ribosome_binding_site" /locus_tag="STM0286" /note="putative RBS for STM0286; RegulonDB:STMS1H000646" CDS 327731..328519 /locus_tag="STM0286" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459284.1" /db_xref="GI:16763669" /db_xref="GeneID:1251805" /translation="MRRPAVVSAPAMFGRLPDQRDYVRWRVGAEEGRIWQDWLNRQTW VGSGRHIVLPGGQTTDEERDGWMHLSPRGEHDMPAPEHHPLPWSFVMSPGFLPMGGTT DWLTGVLMASRDSVGRPWPLVIYQRCGREWLDESLQETQGWLYWLARLAAQHITPDTM RRGRLTEQVDQLWAMWQPGPWWAQWLRGLRRTSQRSRELTGLPDEAPVVELPGVRYLP WPGWPGKTLGQATPGQGWFWQQNSEGRYVDALRLVDEKNRGQML" gene 328510..328932 /locus_tag="STM0287" /db_xref="GeneID:1251806" regulatory 328510..328515 /regulatory_class="ribosome_binding_site" /locus_tag="STM0287" /note="putative RBS for STM0287; RegulonDB:STMS1H000647" CDS 328516..328932 /locus_tag="STM0287" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459285.1" /db_xref="GI:16763670" /db_xref="GeneID:1251806" /translation="MKKYAVEVLFMSACAGMFLPVFAWGGTDVNIDNPLAECVDIHPV HRQEMDNLTILKTTVTLKKSTGECGCFSTLINYTSLLAQDVEGYGRGSAYSLQEGNIS LAKMQGRYPFSFVLSVDNQSVRDQKLALMIRCTPPL" gene 328950..329477 /locus_tag="STM0288" /db_xref="GeneID:1251807" regulatory 328950..328955 /regulatory_class="ribosome_binding_site" /locus_tag="STM0288" /note="putative RBS for STM0288; RegulonDB:STMS1H000648" CDS 328956..329477 /locus_tag="STM0288" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459286.1" /db_xref="GI:16763671" /db_xref="GeneID:1251807" /translation="MMAVRLTFDGQKLTWPGIGIFKATTGLPDLQWPDKQCVPDAAIP EGNYKLFIQFQGEAPIRNAADCDLGPSWGWSTIPRGQAAGTCEIYWANWGYNRIRLES ADEKTRKACGGKRGGFYIHDSTKGYSHGCIEVEPVFFRILKQETEKENGEKTFTVNVK YVSGQQTNGGTKQ" gene 329867..332063 /locus_tag="STM0289" /db_xref="GeneID:1251808" regulatory 329867..329872 /regulatory_class="ribosome_binding_site" /locus_tag="STM0289" /note="putative RBS for STM0289; RegulonDB:STMS1H000649" CDS 329874..332063 /locus_tag="STM0289" /codon_start=1 /transl_table=11 /product="type VI secretion protein Vgr" /protein_id="NP_459287.1" /db_xref="GI:16763672" /db_xref="GeneID:1251808" /translation="MSFVSTNNKSGMGGLTTTTPPITGESGGVTADSVAGSVADAAES AVEQAAGSLFGALPEPSGLVKAAVAAAQAAAAAGMAQDAVSAIVSAVAGGPGAHNVTV SGSAVPPGALLFASLDGGETLSELFSYVVQLKTPDTLNLGYVSPAANLPLKPMVGKDL CVNIELDGGGKRHISGLVTAARVVGHEGRSVTYELRMEPWVKLLTHTSDYKAFQNKTV VDILDEVLAEYPYPVEKRLVESYPVRTWQVQYGETDFDFLQRLMQEWGIYWWFEHSED SHTLVLADAISAHKACPDSPLVEWHQEGLKLDKEFIHTITANESLRTGQWVLDDFDFT KPRSLLANTVANPRETGHATYEHYEWPGDYFDKSEGEMLTRIRMEAQRSPGSRVLGGG NIRTLMTGYTFTLENYPTAEVNQEYLLMQTLLFVQDNAQHSGQDQHFTFSTRFELHPT REVFRPQRTVSKPHTKGPQSAIVTGPAGQEIWTDQYGRVKVQFGWDRYGKMDENSSCW IRVSYPWAGKGFGMIQIPRIGQEVLVDFKNGDPDLPIIVGRTYNQDTMPPWGLPGMAS QSGIFSHSLYGGPTNGNMLRFDDKTGAEEVKFHAEKDLNTTVKNNETHTVMVDRTKTI IKNETNSIGEDRNTTVTKNDGLSVKLAQTINIGTTYRLDVGDQFTLRCGNAALVLHKD GSIEFCGKQLMLHTSDVMQLIGKGIDMNPDGGTAVTADDIAPLLTSE" gene 332080..332533 /locus_tag="STM0290" /db_xref="GeneID:1251809" regulatory 332080..332085 /regulatory_class="ribosome_binding_site" /locus_tag="STM0290" /note="putative RBS for STM0290; RegulonDB:STMS1H000650" CDS 332087..332533 /locus_tag="STM0290" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459288.1" /db_xref="GI:16763673" /db_xref="GeneID:1251809" /translation="MDRPYRIQEGCFVLPETFTDRSVNIFILEGNERTSPSLNISRDT LKPDEDLPAYIDRQIALMKKNLGQHRVLSRAPAQAGTGNDALMGEQIAATHKSGKTEV YQRQAGFIATPGKVLVFTLTSPRPFDDKADLLWNTWLAGFQPDKNE" gene 332541..336646 /locus_tag="STM0291" /db_xref="GeneID:1251810" regulatory 332541..332546 /regulatory_class="ribosome_binding_site" /locus_tag="STM0291" /note="putative RBS for STM0291; RegulonDB:STMS1H000651" CDS 332552..336646 /locus_tag="STM0291" /note="similar to E. coli rhsD protein in rhs element (AAC73599.1); Blastp hit to AAC73599.1 (1426 aa), 27% identity in aa 315 - 985, 46% identity in aa 1151 - 1261, 25% identity in aa 297 - 788, 24% identity in aa 346 - 870, 22-1073758628dentity in aa 465 - 904, 26% identity in aa 317 - 724, 32-1073758654dentity in aa 4 - 143, 24% identity in aa 232 - 605, 21% identity in aa 562 - 970, 23% identity in aa 318 - 755, 32% identity in aa 974 - 1076, 26% identity in aa 935 - 1051, 22% identity in aa 358 - 540, 37% identity in aa 1 - 32, 31-1073758588dentity in aa 1041 - 1099, 26% identity in aa 1000 - 1083, 30-1073758532dentity in aa 943 - 1025, 27% identity in aa 1172 - 1193, 32% identity in aa 1211 - 1235, 63% identity in aa 1393 - 1403, 28% identity in aa 1175 - 1210" /codon_start=1 /transl_table=11 /product="putative RHS-family protein" /protein_id="NP_459289.1" /db_xref="GI:16763674" /db_xref="GeneID:1251810" /translation="MYEAARVDDPIYHTSALAGFLIGAIIGIAIIALAAFAFFSCGFL AGLILGFMADQIASGVLQLGEAIGRSIHHTAGKILTGSENVSTNSRPAARAVLSTVKC DNHIAEKRIAQGSENIYINSQPAARKDDHTECDAVIEDGSPNVFLGGGTQTVLEISSE IPDWLRKVVDVLFVVASLLGGLAGAWRQAAKLGTKFGTKCAAKFIGGELVGMAVGEAI SGLFSNPVDVTTGQKILLPETDFTLPGRLPVTCSRFYASHLETVGLLGRGWRLNWETS LRDDDEHITLTGVQGRELRYPKTMLTPGHQIFDPEEQLYLSRLHDGRYVLHYTDRSYY VFGDFDSDGMAYLLFMETPHRQRIVFGHEGGRLVRIASSSGHHLLLHRTQTPAGERLS RIELVQGGTRGNLVEYRYDDNGQLTGVVNRAGTQVRQFAYENGLMTAHSNATGFTCRY RWQELDGAPRVTEHDTSDGEHYRFDYDFAAGTTTVTGRQGETWQWWYDRETYITAHRT PGGGMYRFTYNEDHFPVNIELPGGRTVAYEYDIQNRVVKTTDPEGRVTQTQWNGEFDE ITRTALDDDAVWKTQYNAHGQPVQETDPEGRVTQYAYDEQGQMCSRTDAAGGTVVTAF DSRGQMTRYTDCSGRSTGYDHDEDGNLTRVTDAEGKVVRISYNRLGLPETVNSPGKQQ DRYTWNALGLMSSHRRITGSVESWRYTPRGLLAAHTDEEKRETRWQYTPEGRVAALTN GNGAQYRFSHDADGRLVREVRPDGLSRTFILDDSGYLTAIQTTGTQGGVRRETQQRDA LGRLLRTENEHGQRTFSYNRLDQITAVTLTPTEAGQQQHRMQADTVRFEYDRSGWLTA EHAGNGSICYQRDALGNPTDITLPDGQHLTHLYYGSGHLLQTALDGLTVSEYERDSLH RQIMRTQGQLATYSGYDDDGLLSWQRSLASGSAPVLPGQRPARQGCVTSRDYYWNNHG EVGTIDDGLRGSVVYSYDRSGYLTGRSGQMYDHDRYYYDKAGNLLDNEGQGAVMSNRL PGCGRDRYGYNEWGELTTRRDQQLEWNAQGQLTRVISGNTETHYGYDALGRRTRKATY GRHTGHTARSRTDFVWEGFRLLQENVQQQGWRTYLYDAEQPYTPVASVTGRGESRQVW YYHTDVTGTPQEVTAADGTLVWAGYIRGFGENAADISNSGAYFHQPLRLPGQYFDDET GLHYNLFRYYAPECGRFVSQDPIGLRGGLNLYQYAPNPLKYIDPLGLTATVGRWMGPA EYQQMLDTGTVVQSSTGTTHVAYPADIDAFGKQAKNGAMYVEFDVPEKSLVPTNEGWA KIVGPDSIEGRLAKRKGLPVPEMPTAENITVRGEKINGEVEAKC" gene 337088..337836 /locus_tag="STM0292" /db_xref="GeneID:1251811" regulatory 337088..337093 /regulatory_class="ribosome_binding_site" /locus_tag="STM0292" /note="putative RBS for STM0292; RegulonDB:STMS1H000652" CDS 337096..337836 /locus_tag="STM0292" /note="similar to E. coli rhsE protein in rhs element (AAC74538.1); Blastp hit to AAC74538.1 (682 aa), 44% identity in aa 426 - 541, 28% identity in aa 273 - 300" /codon_start=1 /transl_table=11 /product="putative RHS-family protein" /protein_id="NP_459290.1" /db_xref="GI:16763675" /db_xref="GeneID:1251811" /translation="MQQQGWRTYLYDAEQPYTPVASVTGKGESRQVWYYHTDVTGTPQ EVTAADGTLVWAGYIKGFGENAADISNSGAYFHQPLRLPGQYFDDETGLHYNLFRYYA PECGRFVSQDPIGLAGGLNLYQYAPNPIRWIDPLGLAILEHQSNFDAARRTGFENAGM TNPEDVTFSKVDPKTGTVVEFKGPNGAKVAYDAPHADMDVTAGHDKPHVGWQSAGKRG SGGANRGNITYDGPQHPHRSDSKGDDKC" gene 337825..338276 /locus_tag="STM0293" /db_xref="GeneID:1251812" regulatory 337825..337830 /regulatory_class="ribosome_binding_site" /locus_tag="STM0293" /note="putative RBS for STM0293; RegulonDB:STMS1H000653" CDS 337830..338276 /locus_tag="STM0293" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459291.1" /db_xref="GI:16763676" /db_xref="GeneID:1251812" /translation="MLNSNMSELRIELENAIKNLGIHDYRVDKPEQIVSEIKEIYVNG NPRTWWLSLKHRQYVFSYTDNSGYKNISQIVSKQLNESNVINKHIFLIADEDNEQIYV YNVPLNSLPEIIENCRYFEYYVADHELSWLICENDHGDLIVCSTIK" gene 338835..339276 /locus_tag="STM0294" /db_xref="GeneID:1251813" regulatory 338835..338840 /regulatory_class="ribosome_binding_site" /locus_tag="STM0294" /note="putative RBS for STM0294; RegulonDB:STMS1H000654" CDS 338839..339276 /locus_tag="STM0294" /codon_start=1 /transl_table=11 /product="phosphotriesterase" /protein_id="NP_459292.1" /db_xref="GI:16763677" /db_xref="GeneID:1251813" /translation="MLRFVKPGDIFCFKLDEDRYCFGRIITLMTVGHLSELFDIIKKP PGITELEISNARRIIEPIIVDTYSLFDKKLENGSDWRIIGHQVNYNPKNLDGIYFALG IGDSCKKKDCYGNDFLISESEWKTLPKLSPKGGFDIKKRLEIA" gene 340039..340353 /locus_tag="STM0295" /db_xref="GeneID:1251814" regulatory 340039..340044 /regulatory_class="ribosome_binding_site" /locus_tag="STM0295" /note="putative RBS for STM0295; RegulonDB:STMS1H000655" CDS 340045..340353 /locus_tag="STM0295" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459293.1" /db_xref="GI:16763678" /db_xref="GeneID:1251814" /translation="MLTNANKINAVDVFTTGISMVNDKDTAILISDLMLRFGKELDES VAVVQSRCDEDEFNVYRETVGFIMGEMLIKIMNPLYEKHPEIKPKGLKQNIWNRMNNV " gene complement(340455..340703) /locus_tag="STM0296" /db_xref="GeneID:2673756" CDS complement(340455..340703) /locus_tag="STM0296" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_446753.1" /db_xref="GI:1109557574" /db_xref="GeneID:2673756" /translation="MARLCGILTYSRVERLSVRLYGEWMPQAGFINGMPVKVRVMRDC IVITPQHTHGLFGCIEGMGVTRINKRSAEQWLKTFPGR" gene 340756..341460 /locus_tag="STM0297" /note="'pseudogene; frameshift relative to IS3 family transposase IS1351'" /pseudo /db_xref="GeneID:1251816" gene 342207..342722 /gene="safA" /locus_tag="STM0299" /db_xref="GeneID:1251818" regulatory 342207..342212 /regulatory_class="ribosome_binding_site" /gene="safA" /locus_tag="STM0299" /note="putative RBS for safA; RegulonDB:STMS1H000658" CDS 342210..342722 /gene="safA" /locus_tag="STM0299" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_459297.1" /db_xref="GI:16763682" /db_xref="GeneID:1251818" /translation="MVIQMKSIKKLIIASALSMMAASCYAGSFLPNSEQQKSVDIVFS SPQDLTVSLIPVSGLKAGKNAPSAKIAKLVVNSTTLKEFGVRGISNNVVDSTGTAWRV AGKNTGKEIGVGLSSDSLRRSDSTEKWNGVNWMTFNSNDTLDIVLTGPAQNVTADTYP ITLDVVGYQP" gene 342830..343543 /gene="safB" /locus_tag="STM0300" /db_xref="GeneID:1251819" CDS 342830..343543 /gene="safB" /locus_tag="STM0300" /note="similar to E. coli putative chaperone (AAC76177.1); Blastp hit to AAC76177.1 (231 aa), 35% identity in aa 26 - 223" /codon_start=1 /transl_table=11 /product="putative fimbriae assembly chaparone" /protein_id="NP_459298.1" /db_xref="GI:16763683" /db_xref="GeneID:1251819" /translation="MAVALFATNSMVSVYAVNQQLNSATKLFSVKLGATRVIYHAGTA GATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGGDMP TDRETLQWVCIKAVPPENEPSDTQAKGATLDLNLSINACDKLIFRPDAVKGTPEDVAG NLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYVPPFADKTLNMPGSAHGDIE WRVITDFGGESHPFHYVLK" gene 343560..346077 /gene="safC" /locus_tag="STM0301" /db_xref="GeneID:1251820" regulatory 343560..343565 /regulatory_class="ribosome_binding_site" /gene="safC" /locus_tag="STM0301" /note="putative RBS for safC; RegulonDB:STMS1H000659" CDS 343567..346077 /gene="safC" /locus_tag="STM0301" /note="similar to E. coli putative outer membrane protein, export function (AAC73634.1); Blastp hit to AAC73634.1 (867 aa), 34% identity in aa 35 - 862" /codon_start=1 /transl_table=11 /product="pilin outer membrane usher protein SafC" /protein_id="NP_459299.1" /db_xref="GI:16763684" /db_xref="GeneID:1251820" /translation="MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFN QGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTPVLAPCLTVSQLSRYGVKTEDY PQLWKAAKPPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDG IPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGK WQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPV VRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMF VVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQS ATHYQAALLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNF FLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQSWGRHLGNLS LTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGAHRKENITSLWFS MPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGN NSALHLAWNGDYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEA PGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLDPSRLPDDAEVTQTDVRVVPT EGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQDGSAALVDTDSQVYLTGL ADKGELTVKWGAQQCRVNYRLPAHKGIAGLYQMSGLCR" gene 346092..346569 /gene="safD" /locus_tag="STM0302" /db_xref="GeneID:1251821" regulatory 346092..346097 /regulatory_class="ribosome_binding_site" /gene="safD" /locus_tag="STM0302" /note="putative RBS for safD; RegulonDB:STMS1H000660" CDS 346099..346569 /gene="safD" /locus_tag="STM0302" /codon_start=1 /transl_table=11 /product="pilin structural protein SafD" /protein_id="NP_459300.1" /db_xref="GI:16763685" /db_xref="GeneID:1251821" /translation="MWMKIQRVKTVIYSVSLLVAASSLVPIANAAEKLQTTLRVGTYF RAGHVPDGMVLAQGWVTYHGSHSGFRVWSDEQKAGNTPTVLLLSGQQDPRHHIQVRLE GEGWQPDTVSGRGAILRTAADNASFSVVVDGNQEVPADTWTLDFKACALAQEDT" gene 346968..347796 /gene="ybeJ" /locus_tag="STM0303" /db_xref="GeneID:1251822" regulatory 346968..346973 /regulatory_class="ribosome_binding_site" /gene="ybeJ" /locus_tag="STM0303" /note="putative RBS for ybeJ; RegulonDB:STMS1H000661" CDS 346975..347796 /gene="ybeJ" /locus_tag="STM0303" /note="similar to E. coli orf, hypothetical protein (AAC74108.1); Blastp hit to AAC74108.1 (672 aa), 36% identity in aa 52 - 189, 21% identity in aa 213 - 280" /codon_start=1 /transl_table=11 /product="carbohydrate transporter" /protein_id="NP_459301.1" /db_xref="GI:16763686" /db_xref="GeneID:1251822" /translation="MSYARHLPVLMYHHVSDKPGQITLSPRTFRAQMKWLAESGWKTV TAAEVEAFYHGARLPRKSVMLTFDGGWLDNWLQVFPVLQEFNLHAHLFLVTSLISDGP VRIPAGEPVYSHDECQMLVKQGRADEVMLRWSEVREMHLSGLVEFHSHTHTHRRWDQK PVSRNPSDLLRVDILLSRKRMREMLGYCSQHLCWPEGWYCSDYIHVAEELGFTYLYTT ERRMNNPVIGSQRIGRINAKERKNVGWLKRRLFYHTTPGFSSLLARHKGARRIAD" gene 348606..349558 /gene="sinR" /locus_tag="STM0304" /db_xref="GeneID:1251823" regulatory 348606..348611 /regulatory_class="ribosome_binding_site" /gene="sinR" /locus_tag="STM0304" /note="putative RBS for sinR; RegulonDB:STMS1H000662" CDS 348611..349558 /gene="sinR" /locus_tag="STM0304" /note="SINR protein. (SW:SINR_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_459302.1" /db_xref="GI:16763687" /db_xref="GeneID:1251823" /translation="MMELINNRGMRDWMIFIKVAEVGNLSRAARELDISISAVSKSLS RLENSIEVTLLRRDSHHLELTGAGQTAYASMKRITSSFQSLLDELRNPDKIIRGSIKF SAPAIVCEFLANKWIWEFTASYPDTKIYLDSRERSDFFSKSLEFDELVFKSGIIESED LVYRKISPLKLVLCASPKYIRKYGRISHPGDLENHIIVGLHNHGLSGPLTLFRQDESY TISGAVNVHLSSNNLLSVLNLVLEGKGINLMTPAWLATKYLKNNELEIILPEWRVPDL PIYLVWRHRQYYSPLFQRFLSFIEDKWNNRPQIDFLNDD" gene 349672..349890 /locus_tag="STM0305" /db_xref="GeneID:1251824" regulatory 349672..349677 /regulatory_class="ribosome_binding_site" /locus_tag="STM0305" /note="putative RBS for STM0305; RegulonDB:STMS1H000663" CDS 349675..349890 /locus_tag="STM0305" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459303.1" /db_xref="GI:16763688" /db_xref="GeneID:1251824" /translation="MMPTDGNDNTRKQDGAVFGQPEVKPIPETLQCTEKWRQVAPVQR FSEGAGVFITDILHCAFGNPQDQLFYR" gene complement(349894..350619) /locus_tag="STM0306" /db_xref="GeneID:1251825" CDS complement(349894..350613) /locus_tag="STM0306" /codon_start=1 /transl_table=11 /product="adhesin" /protein_id="NP_459304.1" /db_xref="GI:16763689" /db_xref="GeneID:1251825" /translation="MKNFFAVCIIPLVVAWSATASAKEGIYITGKAGTSVVNVYGINS TFSQDEIVNGHATLPDRTKGVFGGGVAIGYDFYDPFQLPVRLELDTTFRGETDAKGGQ DIIAFGDPVHINVKNQVRMTTYMVNGYYDFHNSTAFTPYISAGVGLAHVKLSNNTIPV GFGINETLSASKNNFAWGAGIGAKYAVTDNIMIDASYKYINAGKVSISKNHYAGDEHT AYDADTKAASNDFMLGITYAF" regulatory complement(350614..350619) /regulatory_class="ribosome_binding_site" /locus_tag="STM0306" /note="putative RBS for STM0306; RegulonDB:STMS1H000664" gene complement(350944..351358) /locus_tag="STM0307" /db_xref="GeneID:1251826" CDS complement(350944..351351) /locus_tag="STM0307" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459305.1" /db_xref="GI:16763690" /db_xref="GeneID:1251826" /translation="MKNFVRTTLLAATLAGVSFGAFATAVPNPPLPAQDPIVQHLKLT NDQITRIKKLHQQLETDVSQISMKGIKDGALIEVIKSGKWDDAAVKQQLAAFSNIEQQ ARYYRVKYYFDLSKVLTPEQRQQVQQDLAQALE" regulatory complement(351353..351358) /regulatory_class="ribosome_binding_site" /locus_tag="STM0307" /note="putative RBS for STM0307; RegulonDB:STMS1H000665" gene complement(351722..352503) /gene="yafV" /locus_tag="STM0308" /db_xref="GeneID:1251827" CDS complement(351722..352489) /gene="yafV" /locus_tag="STM0308" /note="similar to E. coli putative EC 3.5. amidase-type enzyme (AAC73323.1); Blastp hit to AAC73323.1 (256 aa), 82% identity in aa 3 - 255" /codon_start=1 /transl_table=11 /product="putative amidohydrolase" /protein_id="NP_459306.1" /db_xref="GI:16763691" /db_xref="GeneID:1251827" /translation="MSGLKITLLQQPLVWMDGPANLRHFDRQLELVSGRDVIVLPEMF TTGFAMEAANNSLSQDSVITWMQAKARQTDALIAGSAALQTERGAVNRFLLVEPEGKV HLYDKRHLFRMADEHQHYAAGDKRIIVQWRGWRILPLICYDLRFPIWSRNRNDYDLAL YVANWPAPRSLHWQTLLTARAIENQAYVAGCNRVGTDGNGLHYRGDSRIINPQGDIIA TAEPHQATRIDADLSLVALQDYREKFPAWRDADPFTL" regulatory complement(352498..352503) /regulatory_class="ribosome_binding_site" /gene="yafV" /locus_tag="STM0308" /note="putative RBS for yafV; RegulonDB:STMS1H000666" gene complement(352598..355058) /gene="yafH" /locus_tag="STM0309" /db_xref="GeneID:1251828" CDS complement(352598..355042) /gene="yafH" /locus_tag="STM0309" /EC_number="1.3.99.-" /note="similar to E. coli putative acyl-CoA dehydrogenase (AAC73325.1); Blastp hit to AAC73325.1 (826 aa), 95% identity in aa 13 - 826" /codon_start=1 /transl_table=11 /product="putative acyl-CoA dehydrogenase" /protein_id="NP_459307.1" /db_xref="GI:16763692" /db_xref="GeneID:1251828" /translation="MMILSIIATVVLLGALFYHRVSLFLSSLILLAWTAALGVAGLWS IWLLVPLAIILVPFNLTPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDL FQGKPDWKKLHNYPQPQLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLK EHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGT EEQKNHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGVVCMGEWQGQQVLGMRLTWN KRYITLAPIATVLGLAFKLSDPDRLLGGEEELGITCALIPTSTPGVEIGRRHFPLNVP FQNGPTRGNDIFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALA TGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAI VKYHCTHRGQQSIIDAMDITGGKGIMLGESNFLARAYQGAPIAITVEGANILTRSMMI FGQGAIRCHPYVLEEMAAAQNNDVNAFDKLLFKHIGHVGSNTVRSFWLGLTRGLTSHT PTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDVLSQLYLASAV LKRYDDEGRHEADLPLVHWGVQDALYRAEQAMDDLLQNFPNRVVAGLLTAMIFPTGRH YLAPSDKLDHAVAKILQVPNATRSRIGRGQYLTPAEHNPVGLLEEALRDVIAADPIHQ RICKELGKNLPFTRLDELARNALAKGLIDKDEAAILAKAEESRLRSINVDDFEPEALA TKPVKLPEKVRKVEAA" regulatory complement(355053..355058) /regulatory_class="ribosome_binding_site" /gene="yafH" /locus_tag="STM0309" /note="putative RBS for yafH; RegulonDB:STMS1H000667" gene 355270..355860 /gene="ghmA" /locus_tag="STM0310" /db_xref="GeneID:1251829" regulatory 355270..355275 /regulatory_class="ribosome_binding_site" /gene="ghmA" /locus_tag="STM0310" /note="putative RBS for ghmA; RegulonDB:STMS1H000668" CDS 355282..355860 /gene="ghmA" /locus_tag="STM0310" /EC_number="5.-.-.-" /note="similar to E. coli phosphoheptose isomerase (AAC73326.1); Blastp hit to AAC73326.1 (192 aa), 97% identity in aa 1 - 192" /codon_start=1 /transl_table=11 /product="phosphoheptose isomerase" /protein_id="NP_459308.1" /db_xref="GI:16763693" /db_xref="GeneID:1251829" /translation="MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAG GKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVSNDFGYDYIFS RYVEAVGREGDVLLGISTSGNSGNVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEI RVPHFGYADRIQEIHIKVIHILIQLIEKEMVK" gene 356063..356840 /gene="yafJ" /locus_tag="STM0311" /db_xref="GeneID:1251830" regulatory 356063..356068 /regulatory_class="ribosome_binding_site" /gene="yafJ" /locus_tag="STM0311" /note="putative RBS for yafJ; RegulonDB:STMS1H000669" CDS 356073..356840 /gene="yafJ" /locus_tag="STM0311" /note="similar to E. coli putative amidotransferase (AAC73327.1); Blastp hit to AAC73327.1 (255 aa), 93% identity in aa 1 - 255" /codon_start=1 /transl_table=11 /product="class II glutamine amidotransferase" /protein_id="NP_459309.1" /db_xref="GI:16763694" /db_xref="GeneID:1251830" /translation="MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGK GCRTFKDPQPSYHSPIAKLVQNYPIKSCSVIAHIRQANRGEVALENTHPFTRELWGRN WTYAHNGQLNGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMTAVFKYIA TLATVLREKGVFNMLLSDGRYVMAFCSTHLHWITRRAPFGVATLVDQDMEIDFSSQTT PNDVVTVIATQPLTGNETWQKIMPGEWALFCLGERII" gene complement(356811..357565) /gene="yafK" /locus_tag="STM0312" /db_xref="GeneID:1251831" CDS complement(356811..357551) /gene="yafK" /locus_tag="STM0312" /note="similar to E. coli orf, hypothetical protein (AAC73328.1); Blastp hit to AAC73328.1 (246 aa), 90% identity in aa 1 - 246" /codon_start=1 /transl_table=11 /product="transpeptidase" /protein_id="NP_459310.1" /db_xref="GI:16763695" /db_xref="GeneID:1251831" /translation="MRKIAFFLAMLLMPCVSFAGLLSSSSPVTPVSKEYKQQLMGSPV YIQIFKEERTLDLYVKMGEQYQLLDSYKICNYSGGLGPKRRQGDFKSPEGFYSVQRNQ LKPDSRFYKAINIGFPNAYDRAHGYDGKYLMIHGACVSVGCYAMTDSGIDEIFQFVTA ALVFGQPSVQVSIYPFRMTDANMQRHKYSYYKDFWAQLKPGYDYFEQTHKPPTVSIVD GRYVVSKPLSHEVVQPQLASNYTLSEAK" regulatory complement(357560..357565) /regulatory_class="ribosome_binding_site" /gene="yafK" /locus_tag="STM0312" /note="putative RBS for yafK; RegulonDB:STMS1H000670" gene 357788..358856 /gene="dinP" /locus_tag="STM0313" /db_xref="GeneID:1251832" regulatory 357788..357793 /regulatory_class="ribosome_binding_site" /gene="dinP" /locus_tag="STM0313" /note="putative RBS for dinP; RegulonDB:STMS1H000671" CDS 357801..358856 /gene="dinP" /locus_tag="STM0313" /note="devoid of proofreading; damage-inducible protein P; similar to E. coli damage-inducible protein P; putative tRNA synthetase (AAC73335.1); Blastp hit to AAC73335.1 (351 aa), 91% identity in aa 1 - 351" /codon_start=1 /transl_table=11 /product="DNA polymerase IV" /protein_id="NP_459311.1" /db_xref="GI:16763696" /db_xref="GeneID:1251832" /translation="MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTA NYPARQFGVRSAMPTAMALKLCPHLTLLPGRFDAYKEASRHVRDIFSRYTSLIEPLSL DEAWLDVTDSPHCYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNG QYVITPADVPDFLKTLPLAKIPGVGKVSAAKLENMGLRTCGDIQQCDLAMLLKRFGKF GRVLWERSQGIDERDVNSERLRKSVGVERTLAEDIHEWSDCEAIIEHLYPELERRLAI VKPDLLIARQGVKLKFNDFQQTTQEHVWPQLNKEDLITTARKTWDERRGERGVRLVGL HVTLLDPQLERQLVLGL" gene 359075..360207 /locus_tag="STM0314" /note="pseudogene; frameshift relative to E. coli probable peptide chain release factor (GB:AAC73340.1)" /pseudo /db_xref="GeneID:1251833" gene 360188..360818 /gene="prfH" /locus_tag="STM0315" /db_xref="GeneID:1251834" regulatory 360188..360193 /regulatory_class="ribosome_binding_site" /gene="prfH" /locus_tag="STM0315" /note="putative RBS for prfH; RegulonDB:STMS1H000673" CDS 360204..360818 /gene="prfH" /locus_tag="STM0315" /note="similar to E. coli probable peptide chain release factor (AAC73340.1); Blastp hit to AAC73340.1 (166 aa), 82% identity in aa 2 - 163" /codon_start=1 /transl_table=11 /product="peptide chain release factor H" /protein_id="NP_459312.1" /db_xref="GI:16763697" /db_xref="GeneID:1251834" /translation="MILLQLSSAQGPDECCLAVKKALDCLTKEAAREKVSLTRLETEP GRLPDTLRSALVSLDGEKAMAFSERWCGTLLWICTSPYRPHHGRKNWYVGIGRFSADE HIQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLL IAWRLEQQRQNECAALKSERRLFHHQIERGNPLRIFKGMAFTPQ" gene complement(360974..362444) /gene="pepD" /locus_tag="STM0316" /db_xref="GeneID:1251835" CDS complement(360974..362431) /gene="pepD" /locus_tag="STM0316" /note="similar to E. coli aminoacyl-histidine dipeptidase (peptidase D) (AAC73341.1); Blastp hit to AAC73341.1 (485 aa), 92% identity in aa 1 - 485" /codon_start=1 /transl_table=11 /product="cytosol nonspecific dipeptidase" /protein_id="NP_459313.1" /db_xref="GI:16763698" /db_xref="GeneID:1251835" /translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIVSWAKEKG LYVDRDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNSDTVHDFTTDPIQPYIDG EWVKARGTTLGADNGIGMASALAVLADDNVVHGPLEVLLTMTEEAGMDGAFGLQSGWL QADILINTDSEEEGEIYMGCAGGIDFTSNLPLTREAVPAGFACFKLTLKGLKGGHSGG EIHLGLGNANKLLARFLAGHAEELDLRLIDFNGGTLRNAIPREAFATLAVAADNVGAL KTLVNAYQDILKNELAEKEKNLTLQLNEVASDKAALTAPSRDTFVRLLNATPNGVIRN SDVAKGVVETSLNVGVVTMSDANVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA KGSYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPDMDMVSIG PTITGPHSPDEQVHIESVGHYWTLLTELLKAIPAK" regulatory complement(362439..362444) /regulatory_class="ribosome_binding_site" /gene="pepD" /locus_tag="STM0316" /note="putative RBS for pepD; RegulonDB:STMS1H000674" gene 362662..363138 /gene="gpt" /locus_tag="STM0317" /db_xref="GeneID:1251836" regulatory 362662..362667 /regulatory_class="ribosome_binding_site" /gene="gpt" /locus_tag="STM0317" /note="putative RBS for gpt; RegulonDB:STMS1H000675" CDS 362680..363138 /gene="gpt" /locus_tag="STM0317" /EC_number="2.4.2.22" /note="xanthine-guanine phosphoribosyltransferase. (SW:XGPT_SALTY)" /codon_start=1 /transl_table=11 /product="xanthine phosphoribosyltransferase" /protein_id="NP_459314.1" /db_xref="GI:16763699" /db_xref="GeneID:1251836" /translation="MSEKYVVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGA LLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIRE MYPKAHFVTIFAKPAGRPLVDDYVIDIPQNTWIEQPWDMGVVFVPPISGR" gene 363212..364471 /gene="yafA" /locus_tag="STM0318" /db_xref="GeneID:1251837" regulatory 363212..363217 /regulatory_class="ribosome_binding_site" /gene="yafA" /locus_tag="STM0318" /note="putative RBS for yafA; RegulonDB:STMS1H000676" CDS 363227..364471 /gene="yafA" /locus_tag="STM0318" /note="hypothetical protein in gpt-crl intergenic region. (SW:YAFA_SALTY)" /codon_start=1 /transl_table=11 /product="fermentation/respiration switch protein" /protein_id="NP_459315.1" /db_xref="GI:16763700" /db_xref="GeneID:1251837" /translation="MTQANLSETLFKPRFKHTETSTLVRRFNRGSQPPMQSALDGKNV PHWYRMINRLMWIWRGVDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWA KQAMDWQQKACQEQDAMRSGRYWLHASTLYNIAAYPHLKGDELAEQAQALANRAYEEA AQRLPGSLREMEFAVPGGSPVTAFLHMPKGDGPFPTVLMCGGLDAMQTDYYTLYERYF APRGIAMLTLDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGA NVAVRLAYLEAPRLKAVACLGPVVHALLSDPQRQSTVPEMYLDVLASRLGMHDASDEA LRVELNRYSLKVQGLLGRRCPTPMLSGFWKNDPFSPEEESRLITTSSSDGKLIEIPFN PVYRNFDRALQEITDWINHRLC" gene 364517..364930 /gene="crl" /locus_tag="STM0319" /db_xref="GeneID:1251838" regulatory 364517..364522 /regulatory_class="ribosome_binding_site" /gene="crl" /locus_tag="STM0319" /note="putative RBS for crl; RegulonDB:STMS1H000677" CDS 364529..364930 /gene="crl" /locus_tag="STM0319" /note="similar to E. coli transcriptional regulator of cryptic csgA gene for curli surface fibers (AAC73344.1); Blastp hit to AAC73344.1 (133 aa), 83% identity in aa 1 - 133" /codon_start=1 /transl_table=11 /product="sigma factor-binding protein Crl" /protein_id="NP_459316.1" /db_xref="GI:16763701" /db_xref="GeneID:1251838" /translation="MTLPSGHPKSRLIKKFTALGPYIREGQCEDNRFFFDCLAVCVNV KPAPEKREFWGWWMELEAQEKRFTYRYQFGLFDKEGNWTVVPINETEVVERLEYTLRE FHEKLRDLLISMELALEPSDDFNDEPVKLSA" gene complement(364981..366179) /gene="phoE" /locus_tag="STM0320" /db_xref="GeneID:1251839" CDS complement(364981..366033) /gene="phoE" /locus_tag="STM0320" /note="outer membrane pore protein E precursor. (SW:PHOE_SALTY)" /codon_start=1 /transl_table=11 /product="phosphoporin PhoE" /protein_id="NP_459317.1" /db_xref="GI:16763702" /db_xref="GeneID:1251839" /translation="MNKSTLAIVVSIIASASVHAAEVYNKNGNKLDVYGKVKAMHYMS DYDSKDGDQSYVRFGFKGETQINDQLTGYGRWEAEFASNKAESDSSQQKTRLAFAGLK LKDIGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFG IVDGLDLTLQYQGKNEDRDVKKQNGDGFGTSVSYDFGGSDFAVSGAYTLSDRTREQNL QRRGTGDKAEAWATGVKYDANDIYIATFYSETRNMTPVSGGFANKTQNFEAVIQYQFD FGLRPSLGYVLSKGKDIEGVGSEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNTL GINDDDIVAIGLTYQF" regulatory complement(366039..366044) /regulatory_class="ribosome_binding_site" /gene="phoE" /locus_tag="STM0320" /note="putative RBS for phoE; RegulonDB:STMS1H000678" protein_bind complement(366111..366129) /gene="phoE" /locus_tag="STM0320" /note="putative binding site for PhoB, RegulonDB: STMS1H000341" /bound_moiety="PhoB" protein_bind complement(366129..366147) /gene="phoE" /locus_tag="STM0320" /note="putative binding site for PhoB, RegulonDB: STMS1H000340" /bound_moiety="PhoB" regulatory complement(366155..366163) /regulatory_class="minus_10_signal" /gene="phoE" /locus_tag="STM0320" /note="putative -10_signal for phoE; RegulonDB:STMLTH004580" regulatory complement(366171..366179) /regulatory_class="minus_35_signal" /gene="phoE" /locus_tag="STM0320" /note="putative -35_signal for phoE; RegulonDB:STMLTH004580" protein_bind complement(366251..366269) /note="putative binding site for PhoB, RegulonDB: STMS1H000339" /bound_moiety="PhoB" gene 366309..367419 /gene="proB" /locus_tag="STM0321" /db_xref="GeneID:1251840" regulatory 366309..366314 /regulatory_class="ribosome_binding_site" /gene="proB" /locus_tag="STM0321" /note="putative RBS for proB; RegulonDB:STMS1H000679" CDS 366316..367419 /gene="proB" /locus_tag="STM0321" /EC_number="2.7.2.11" /note="similar to E. coli gamma-glutamate kinase (AAC73346.1); Blastp hit to AAC73346.1 (367 aa), 96% identity in aa 1 - 367" /codon_start=1 /transl_table=11 /product="glutamate 5-kinase" /protein_id="NP_459318.1" /db_xref="GI:16763703" /db_xref="GeneID:1251840" /translation="MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHR IVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHIGQML LTRADMEDRERFLNARDTLRALLDNHIVPVINENDAVATAEIKVGDNDNLSALAAILA GADKLLLLTDQQGLFTADPRSNPQAELIKDVYGVDDALRSIAGDSVSGLGTGGMSTKL QAADVACRAGIDTIIASGSKPGVIGDVMEGISVGTRFHAQASPLENRKRWIFGAPPAG EITVDEGATAAMLERGSSLLPKGIKSVTGNFSRGEVIRICNLQGRDIAHGVSRYNSDA LRRIAGHHSQQIDAILGYEYGPVAVHRDDMITR" gene 367418..368681 /gene="proA" /locus_tag="STM0322" /db_xref="GeneID:1251841" regulatory 367418..367423 /regulatory_class="ribosome_binding_site" /gene="proA" /locus_tag="STM0322" /note="putative RBS for proA; RegulonDB:STMS1H000680" CDS 367431..368681 /gene="proA" /locus_tag="STM0322" /EC_number="1.2.1.41" /note="gamma-glutamyl phosphate reductase (GPR). (SW:PROA_SALTY)" /codon_start=1 /transl_table=11 /product="glutamate-5-semialdehyde dehydrogenase" /protein_id="NP_459319.1" /db_xref="GI:16763704" /db_xref="GeneID:1251841" /translation="MLEQMGIAAKAASYKLALLSSGEKNRVLEKIADELEAQMESILS ANVQDVEQARANGLSEAMLDRLALTPARLKAIADDVRQVCNLADPVGQVIDGGLLDSG LRLERRRVPLGVVGVIYEARPNVTVDVASLCLKTGNAVILRGGKETYRTNAATVRVIQ KALKACGLPEAAVQAIDNPDRSLVNEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVI TGGIGVCHIFVDSSADIAPALKIIVNAKTQRPSTCNTVETLLVHQDIAERFLPALSKQ MAESGVTLHGDETVMQVLHGPAKLVPLKPEELDNEFLSLDLNVVVVENMDGAIAHIRE HGTQHSDAILTCDMHNAARFVNEVDSAAVYVNASTRFTDGGQFGLGAEVAVSTQKLHA RGPMGLEALTTYKWIGFGDGTIRA" gene 368807..368879 /gene="thrW" /locus_tag="STM0323" /db_xref="GeneID:1251842" tRNA 368807..368879 /gene="thrW" /locus_tag="STM0323" /product="tRNA-Thr" /db_xref="GeneID:1251842" gene 369153..369380 /locus_tag="STM0324" /db_xref="GeneID:1251843" regulatory 369153..369158 /regulatory_class="ribosome_binding_site" /locus_tag="STM0324" /note="putative RBS for STM0324; RegulonDB:STMS1H000682" CDS 369159..369380 /locus_tag="STM0324" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_446779.1" /db_xref="GI:1109557577" /db_xref="GeneID:1251843" /translation="MFRTETATGTVTTLPIVITLTIIKHCCPHYFPADKVLSVDTFHL QRMEEAFRTGIVVTTTSGAHTSPQIMAFQ" gene complement(369198..369998) /locus_tag="STM0325" /db_xref="GeneID:1251844" CDS complement(369198..369998) /locus_tag="STM0325" /note="similar to E. coli IS3 putative transposase (AAC75150.1); Blastp hit to AAC75150.1 (288 aa), 83% identity in aa 30 - 267" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="NP_459321.1" /db_xref="GI:16763706" /db_xref="GeneID:1251844" /translation="MLASTPPTSTGVFNRALSSLAIACICKRYVWHQRRHQINRRQRF HLVCDNVFREAFSDAKQRYGAPRLTDELRAQGYQFNVKTVAASLRRQGLRAKASRRFR PVSYRKHGLPVSENLLKQDFYASGPNQKWVGDITYLRTGEGWLYLAVVIDLWSRSVIG WSMSSRMTAQLACDALQMALWRRKCPENVIVHTDRGGQYCSTDYQSLLKRHNLRGSMS ARGCCYDNACAESFFHTLKVECIHGEDFVSREIMRTAVFNYSECDYNR" gene 369925..370630 /locus_tag="STM0326" /note="pseudogene; frameshift; putative HSP70 class molecular chaperone" /pseudo /db_xref="GeneID:1251845" gene 370726..371063 /locus_tag="STM0327" /db_xref="GeneID:1251846" regulatory 370726..370731 /regulatory_class="ribosome_binding_site" /locus_tag="STM0327" /note="putative RBS for STM0327; RegulonDB:STMS1H000684" CDS 370740..371063 /locus_tag="STM0327" /note="similar to E. coli orf, hypothetical protein (AAC74880.1); Blastp hit to AAC74880.1 (119 aa), 66% identity in aa 13 - 119" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459322.1" /db_xref="GI:16763707" /db_xref="GeneID:1251846" /translation="MVNFKDKSMPTAIEKALDFIGGMNTSASVPHSMDESTAKGILKY LHDLGVPVSPEVVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQEQ LKELV" gene 371397..372642 /locus_tag="STM0328" /db_xref="GeneID:1251847" regulatory 371397..371402 /regulatory_class="ribosome_binding_site" /locus_tag="STM0328" /note="putative RBS for STM0328; RegulonDB:STMS1H000685" CDS 371404..372642 /locus_tag="STM0328" /note="similar to E. coli putative transport protein (AAC74668.1); Blastp hit to AAC74668.1 (417 aa), 34% identity in aa 33 - 407" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_459323.3" /db_xref="GI:1109557578" /db_xref="GeneID:1251847" /translation="MCMKNNIEETIGKYLPILMILPLAGLAELASLYSIQALLPKLSE VYNIPLNQVGMILSAEVGFLALAMLFSGTLSDRFGRKPIIFYSLLAGGILTLLCATAS SWPMLVVYRALLGIAVSGITAAVTVYISEEVSPALAGIVTGYFIFGNSLGSMSGRVFA TLMMEHVSIDTIFFIFGGVLIAMALAVKLFLPTSRQFVPTPSLQLGAVLKGGLEHFKN IRVSLCFVIGFILFGSFTSIFNFLAFYLHRPPYELSYTWIGLIPVSFSLTFFLAPYAA RVALNIGSMNALSMLIICMMVGAFLTLIAPSLWVFISGIVLLSVAFFSAHSTVLAWVS SRSPNAKGQATSFYLLCYYSGGAVMGYLNGYLFSWQGWNAIAASCLMMLGIGLFICRF IFAKYEKQPQIKKQSVQESF" gene 372766..374195 /locus_tag="STM0329" /db_xref="GeneID:1251848" regulatory 372766..372771 /regulatory_class="ribosome_binding_site" /locus_tag="STM0329" /note="putative RBS for STM0329; RegulonDB:STMS1H000686" CDS 372774..374195 /locus_tag="STM0329" /note="similar to E. coli 3-isopropylmalate isomerase dehydratase subunit (AAC73183.1); Blastp hit to AAC73183.1 (466 aa), 52% identity in aa 2 - 465; subunit with LeuD" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydratase large subunit" /protein_id="NP_459324.1" /db_xref="GI:16763709" /db_xref="GeneID:1251848" /translation="MSAKTLYEKLVESHTIRELDNEGHVLLYIDRSILNEYTSPQAFS GLRERGRTVRHPDTFLLNIDHVNPTRSQRDDLMTDPGGQLQVDYFRENAADFGITLFD VLDPRQGIEHVVAHEQGLVMPGMVIAAGDSHTTTYGAFGALGFGIGTSEIEHLLATQT LVYRKLKTMRVSVQGELPFACSAKDIVLELLERIGADGATGYAIEFVGEAISALSVEG RMTLCNMAVEAGARGAIIAPDKKVFDYIYGKPQMPVGELWQQALLEWSQLSSDADAVF DKTVAINCHDLEPKVTWGISPDQTGSITGRVPFPEQETNPLKRLALEKALHYMGLTAG MLLKDIRISHAFIGSCTNGRIEDLRAVAKVLEGRKIASHVRGIIVPGSTMVRRQAEEE GLAKIFIAAGFEWRQSGCSMCLAMNEDVLSPGDRCASGTNRNFPGRQGAGARTHLMSP AMVAAAAVAGHLVDVRSLLQAGE" gene 374190..374823 /locus_tag="STM0330" /db_xref="GeneID:1251849" regulatory 374190..374195 /regulatory_class="ribosome_binding_site" /locus_tag="STM0330" /note="putative RBS for STM0330; RegulonDB:STMS1H000687" CDS 374197..374823 /locus_tag="STM0330" /note="similar to E. coli isopropylmalate isomerase subunit (AAC73182.1); Blastp hit to AAC73182.1 (201 aa), 39% identity in aa 3 - 193" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydratase small subunit" /protein_id="NP_459325.1" /db_xref="GI:16763710" /db_xref="GeneID:1251849" /translation="MDTFKQISGRIAPMLEPNIDTDVIMPKQFLKGIDRQGLDKGVFF DRRFMAGGQPNPDFILNMPGWQSATFLLVGPNFGCGSSREHAVWGLKQLGVRGLIGST FAGIFDDNCQRNGILTVSLDEPALARLAQLAASADTNSITVSLDRCEITTAEETISFV ISELKRAMLAAGEDAIAWTLQYLPEIENFEVAHYSRRPWLKRPASPRG" gene 374831..375716 /locus_tag="STM0331" /db_xref="GeneID:1251850" regulatory 374831..374836 /regulatory_class="ribosome_binding_site" /locus_tag="STM0331" /note="putative RBS for STM0331; RegulonDB:STMS1H000688" CDS 374838..375716 /locus_tag="STM0331" /note="similar to E. coli putative isomerase (AAC74264.1); Blastp hit to AAC74264.1 (219 aa), 34% identity in aa 11 - 217" /codon_start=1 /transl_table=11 /product="5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase" /protein_id="NP_459326.1" /db_xref="GI:16763711" /db_xref="GeneID:1251850" /translation="MKLVQYLVNGGKRYGIMQETGIIDLSQRLGDKYPTLKSLLCANA LTDAALWCDEPADYYYQEVTFLPVIDDPQKIICVGMNYADKRIEFNETNPAPTLFVRF ADSQTGHNGLLLKPENTNEFDYEGELAVVIGRRCSRVSAEDALDYVAGYSCYMDGSVR DWQHSWFTAGKNWPSTGSFGPCLVTTDDIPDPQMLRLLTRLNGREVQNESTANMIHPI ASLIAYISTFTLLSPGDTILTGSPGGVGKKRVPPLFLHDGDVIEVEIEHIGTLRNVVR DSRYLTSSVSWHDGRK" gene 375712..376630 /locus_tag="STM0332" /db_xref="GeneID:1251851" regulatory 375712..375717 /regulatory_class="ribosome_binding_site" /locus_tag="STM0332" /note="putative RBS for STM0332; RegulonDB:STMS1H000689" CDS 375716..376630 /locus_tag="STM0332" /note="similar to E. coli orf, hypothetical protein (AAC73780.1); Blastp hit to AAC73780.1 (254 aa), 33% identity in aa 15 - 129" /codon_start=1 /transl_table=11 /product="hydrolase" /protein_id="NP_459327.1" /db_xref="GI:16763712" /db_xref="GeneID:1251851" /translation="MSTLIECGASPFIPGFALKDVRLENGLTVRVAIGGSGSPLVLLH GHPQNHTTWRKVAPTLAQNHTVILPDLRGYGDSDKPTSDPAHRTYSKRTMAQDIVMLM DALGFSRFAFVGHDRGGRVGHRLALDYPDRVTCCTFIDIAPTATMYALTDKSFATRYF WWFFLIQPFPLPETMIAHDPAFFLRKHISGQLKIEGATSQEAFNEYLRCYQNPEMIHA ICEDYRAAATIDLDDDAADTSARIRCPLQLLWGGLGTVGQLYNVVGTWKEKALNVQGE ALPCGHSPQEECPEYFIQKLQSFLHSVL" gene 376656..377629 /locus_tag="STM0333" /db_xref="GeneID:1251852" regulatory 376656..376661 /regulatory_class="ribosome_binding_site" /locus_tag="STM0333" /note="putative RBS for STM0333; RegulonDB:STMS1H000690" CDS 376664..377629 /locus_tag="STM0333" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC74869.1); Blastp hit to AAC74869.1 (314 aa), 44% identity in aa 2 - 307" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_459328.1" /db_xref="GI:16763713" /db_xref="GeneID:1251852" /translation="MKTTPVGKKHRQPLEGWPSVEDLFVFVTVARNGGFARAALELGL SPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGENALGGAMQVVSEMDGFVSRLDNQ RGVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVKLTLTDREVDLVEEGIDIEIR VGDDINELYIARQLATNRRILCASPEYLERHGKPESVSALVQHDCLMIQEKNSAFGNW ILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITLRSEWDVAQYIERGELVRVLPQ WYQEANIWAVYTRRSSSSDRIKICIDFLTEHLAQCLPGGKAPGVL" gene complement(377574..377854) /locus_tag="STM0334" /db_xref="GeneID:1251853" CDS complement(377574..377846) /locus_tag="STM0334" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459329.1" /db_xref="GI:16763714" /db_xref="GeneID:1251853" /translation="MTLKPGEKSGNNGGIYVEVGPRGGIKDNFATIAETKPRHQRNAL KATGCWQKEHLTVNVSQSIWRHDSWRRLITVRPVLYRLASIVQDAP" regulatory complement(377849..377854) /regulatory_class="ribosome_binding_site" /locus_tag="STM0334" /note="putative RBS for STM0334; RegulonDB:STMS1H000691" gene 378531..378935 /locus_tag="STM0335" /db_xref="GeneID:1251854" regulatory 378531..378536 /regulatory_class="ribosome_binding_site" /locus_tag="STM0335" /note="putative RBS for STM0335; RegulonDB:STMS1H000692" CDS 378537..378935 /locus_tag="STM0335" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459330.1" /db_xref="GI:16763715" /db_xref="GeneID:1251854" /translation="MKLIIILLLALFPLCSSASNHYALVFENNTILLVLNLKCSPCDL NCANIQYQIFNKETESVISGVAKPVTTGIENNFRGYMMRNNNTFYTLIESDNENVWDM SVEEKGTQQNKDAVQKVKYQLNAIFDNGTC" gene complement(378982..379748) /gene="stbE" /locus_tag="STM0336" /db_xref="GeneID:1251855" CDS complement(378982..379740) /gene="stbE" /locus_tag="STM0336" /note="similar to E. coli periplasmic chaperone, required for type 1 fimbriae (AAC77272.1); Blastp hit to AAC77272.1 (241 aa), 30% identity in aa 32 - 241" /codon_start=1 /transl_table=11 /product="fimbrial assembly protein" /protein_id="NP_459331.1" /db_xref="GI:16763716" /db_xref="GeneID:1251855" /translation="MRNYRQWLVFSKVILTLLGLTGWYGPAQAAVNIDRTRIIFASDE VAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLL SSRQQLATDRESLFWLNIYQIPPVTQDIKNHPRKLVLPLRLRLKILIRPTGLKAPTEA EEKKLRFIAKENTIRIVNPTSWYMSLTLTTDDKKSIGDIMVAPKTARDVPLTRSPTPG ASINYAVISDSGNWRQYTAILEKYISENDFTPEF" gene complement(379706..381038) /gene="stbD" /locus_tag="STM0337" /db_xref="GeneID:1251856" CDS complement(379706..381031) /gene="stbD" /locus_tag="STM0337" /codon_start=1 /transl_table=11 /product="fimbrial protein" /protein_id="NP_459332.1" /db_xref="GI:16763717" /db_xref="GeneID:1251856" /translation="MLFSFRTLLFITSLFVSAGTWSSCIKVTDKSALSDAAIKAGYTA QNWIGATDTNTGNIGLPTVISVSNSETFQPSGTLLASGIGNFLTAATGTPYSSKQVLY RCDTADAGKLYEMYSTNGDSAFAGAFFTPEVEGAYYDVERNVAVRMTNLSTGEYYSRF WKERQLTADSWFQDDKYIYIPASAFSNVLYEMFKIDSRKYFAYQNPMDRDTWTQPRGY IAFKGPGLITERIKAGLDHASDYYGWPSYWPGAWSTYNSVTYVRGALCKITDYPAIVK IPPVAVGILAAGGNSQAPFHVSLECESGAVSSALPSTSAANVAMGFVVNQPTAVAAAR RLGLTTSAGGLSWLLDTHYGEPGVASGVGIRIYNDAGTPINLLPDRIKTGTGNARGWY GYKDLTTRVSSGSVETYSGDFTASLEAIGGQTVTAGSVNAQLQAVVSFQ" regulatory complement(379743..379748) /regulatory_class="ribosome_binding_site" /gene="stbE" /locus_tag="STM0336" /note="putative RBS for stbE; RegulonDB:STMS1H000693" regulatory complement(381033..381038) /regulatory_class="ribosome_binding_site" /gene="stbD" /locus_tag="STM0337" /note="putative RBS for stbD; RegulonDB:STMS1H000694" gene complement(381036..383603) /gene="stbC" /locus_tag="STM0338" /db_xref="GeneID:1251857" CDS complement(381036..383597) /gene="stbC" /locus_tag="STM0338" /note="similar to E. coli outer membrane protein; export and assembly of type 1 fimbriae, interrupted (AAC77273.1); Blastp hit to AAC77273.1 (878 aa), 30% identity in aa 30 - 870" /codon_start=1 /transl_table=11 /product="fimbrial assembly protein" /protein_id="NP_459333.1" /db_xref="GI:16763718" /db_xref="GeneID:1251857" /translation="MSPTINLNRKSLALLIAIVCSGSAQGEEYYFDPALLQGATYGQN IARFNERQTPSGDYLADVYVNGTLVTSSTNIRFNAVKEGQQTEPCLPLSVMKAAQIKS LPATDAATECRPLREWVPHAGWQFDSATLRLLLTIPMTELTHKPRGYISPSEWDSGAL ALFLRHNTNWTHTENTDSHYRYQYLWSGLNMGVNLGLWQVRHQSNLRYANSNQSGSAW RYNSVRTWVQRPVASVNSILSLGDSYTDSSLFGSLSFNGAKLVTDERMRPQGKRGYAP EVRGVAASSAHVVVKQLGKVIYETNVPPGPFYIDDLYNTRYQGDLEVEVIEASGKTSR FTVPYSSVPDSVRPGNWHYSLAFGRVRQYYDIENRFFEGTFQHGVNNTITLNLGSRIA QRYQAWLAGGVWATGMGAFGLNATWSNARAEHNDRQQGWRAELSYSKTFTTGTNLVLA AYRYSTNGFRDLQDVLGVRREAKTGIDYYSDTLHQRNRLSATVSQPLGRLGTLNLSAS TADYYNNQSRITQLQMGYSNQWRNISYGVNIARQRTTWDYDRFYHGVNEPLDVSSRQK YTETTMSFNVSIPLDWGENRTSVAMNYNQSSQSRSSTVSMTGSSGENSDLSWSVYGGY ERYRNSNSDSSAPTTFGGNLQQNTRFGALRANYDQGDNYRQEGLGASGTLVLHPGGLT AGPYTSDTFALIHADGAQGAIVQNGQGAVVDRFGYAILPSLSPYRVNNVTLDTRKMRS DAELTGGSQQIVPYAGAIARVNFATISGKAVLISVKMPDGGIPPMGADVFNGEGTNIG MVGQSGQIYARIAHPSGSLLVRWGTGANQRCRVAYQLDLHTKEPFLYLNKICEKE" gene complement(383581..384357) /gene="stbB" /locus_tag="STM0339" /db_xref="GeneID:1251858" CDS complement(383581..384342) /gene="stbB" /locus_tag="STM0339" /note="similar to E. coli probable pilin chaperone similar to PapD (AAC73251.1); Blastp hit to AAC73251.1 (246 aa), 40% identity in aa 1 - 240" /codon_start=1 /transl_table=11 /product="fimbrial chaperone protein StbB" /protein_id="NP_459334.1" /db_xref="GI:16763719" /db_xref="GeneID:1251858" /translation="MKMDTRHSALYYLIVFLFLALPATASWASVTILGSRIIYPSTAS SVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPLIATPPVFRIQPKAGQVVRVIY NNTKKLPQDRESVFWFNVLQVPPTNIGSDSGQNKMLVMLRSRIKLFYRPDGLGKPDNL AKKLQIKTVNKGSGKSGIVIVNPQPWFASLSNLNVKVNGASYNLDADMIAPFSSQTWW LPGKRSLKSFSGTVTVTLVNDLGARISESYDVPHH" regulatory complement(383598..383603) /regulatory_class="ribosome_binding_site" /gene="stbB" /locus_tag="STM0339" /note="putative RBS for stbC; RegulonDB:STMS1H000695" regulatory complement(384352..384357) /regulatory_class="ribosome_binding_site" /gene="stbB" /locus_tag="STM0339" /note="putative RBS for stbB; RegulonDB:STMS1H000696" gene complement(384404..384948) /gene="stbA" /locus_tag="STM0340" /db_xref="GeneID:1251859" CDS complement(384404..384940) /gene="stbA" /locus_tag="STM0340" /note="similar to E. coli major type 1 subunit fimbrin (pilin) (AAC77270.1); Blastp hit to AAC77270.1 (182 aa), 28% identity in aa 1 - 182" /codon_start=1 /transl_table=11 /product="fimbrial protein" /protein_id="NP_459335.1" /db_xref="GI:16763720" /db_xref="GeneID:1251859" /translation="MSMKKYLAMITGSLLVSSSAMAVSDNTITFQGEVSDETCSVVIN GNQAKPVVLLPTVSTKDLSEQGKTAGPITFDIGLSGCTGSQDKTTKISTVFVGNQVTS NGNLGNTGSAKNVEVQLLDTSGEPINLTGGFTGDGDLQLEPNASEASATYTARYYSTG KAEAGTVAATLQYAVSYK" regulatory complement(384943..384948) /regulatory_class="ribosome_binding_site" /gene="stbA" /locus_tag="STM0340" /note="putative RBS for stbA; RegulonDB:STMS1H000697" gene 385574..386338 /locus_tag="STM0341" /db_xref="GeneID:1251860" CDS 385574..386338 /locus_tag="STM0341" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459336.1" /db_xref="GI:16763721" /db_xref="GeneID:1251860" /translation="MMDAVTFRIVMNETIFLLDKRVVFDSTKMTLSHGNEIIRISEAE THLLLAFWHGLYKKEDIIHFVWENRGGCVSESSYYKLINQMRNDFSSIGLQSSDIVTR PRVGVSLSVAIEPIKKITSLKVSDENVKGTTTRENIFYKNKRHSVFVVLTGAILLALL YGVFTIYKAPVRNSPDSFFTYLGEYNDYAIYKTKEDKVTLSEVVFAFNSLKIKIYRQN GRHLYYIREPNMNIFLQCLNPVEMAVPKCITVKERY" gene 386306..386610 /locus_tag="STM0342" /db_xref="GeneID:1251861" regulatory 386306..386311 /regulatory_class="ribosome_binding_site" /locus_tag="STM0342" /note="putative RBS for STM0342; RegulonDB:STMS1H000698" CDS 386311..386610 /locus_tag="STM0342" /note="unknown (gi|6707277)" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459337.1" /db_xref="GI:16763722" /db_xref="GeneID:1251861" /translation="MYYSKRTLLIIFVIFIAIVAIGSIIALEWVNRDSYRTNNLICTT KSEAYIAPRKLYMDGGLVLDLKSGRITLHYDVTTDTKEKRLFFVISASANCAERV" gene 387105..388684 /locus_tag="STM0343" /db_xref="GeneID:1251862" regulatory 387105..387110 /regulatory_class="ribosome_binding_site" /locus_tag="STM0343" /note="putative RBS for STM0343; RegulonDB:STMS1H000699" CDS 387110..388684 /locus_tag="STM0343" /note="similar to E. coli orf, hypothetical protein (AAC75237.1); Blastp hit to AAC75237.1 (518 aa), 31% identity in aa 10 - 512" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase/phosphodiesterase domain 1" /protein_id="NP_459338.1" /db_xref="GI:16763723" /db_xref="GeneID:1251862" /translation="MKVRKLFLMLFIAVPLIVMILVGLLAGIFQLKRDIAVSANTLLR FSADISAASWQVAGKAARLAESSCTDTLKELSRTRAFTPYVRDIGFLENGDITCSFVT GTERYHFSRLAGLSLPASYPERWLRSIGSMAEGPDRLVVVYVKKVAADKAAFVIVDSQ YVQELMEILAAERASAFSLTFGAGEAITSAAKLRGKAFLTQRFTSTDHTIQLMVRTPF STLSAYWLQNLFIFIPLSLCLSVGMMLFYRRWYLKRLSLAREIARGITHNEFTVHYQP VFNVKHGSCGGVEALMRWPQPDGRFITPDIFITAAENEGMIIPLSRHLFELIAHDVIN WTVPDDFYISVNISPAHLMDDGFIQDIEALRTRLGTITLMLELTERSLIVEPSQVAEK LSTLREKGVLIAIDDFGTGYCSLSYLQQLPVDSLKIDRTFIDTIDTSSDDVPVLDTII TLSQRLGLNVVAEGVSTQHQLRYILSHGVGFVQGFLYARPMGTNDFMSWLGKSAQRQN GLLKGESGSASDLVAE" gene 388778..389527 /locus_tag="STM0344" /db_xref="GeneID:1251863" regulatory 388778..388783 /regulatory_class="ribosome_binding_site" /locus_tag="STM0344" /note="putative RBS for STM0344; RegulonDB:STMS1H000700" CDS 388784..389527 /locus_tag="STM0344" /codon_start=1 /transl_table=11 /product="putative response regulator" /protein_id="NP_459339.1" /db_xref="GI:16763724" /db_xref="GeneID:1251863" /translation="MSQNNYLIDKRVILDCERMTLSCAGESITISESERSLLIAFYEG LFKKDDLINYVWGRKGVVVSDASYYKLINQLRGSFDKIGLKGASVVTRPRVGVLLSVS IEPLSDEAQNTPLPAVAETEVSTVEVRHDDTIITPTPGAVNKKDWLYFCLAALLMFFM MYKVKGENIDYFTLQGSYDGYTFYSVGHDKTHLTDIVEAYSEMSNEIHKQNGKIIYYI RVPNTNIFVQCLNQLDIAEPKCISIKERY" gene 389494..389988 /locus_tag="STM0345" /db_xref="GeneID:1251864" regulatory 389494..389499 /regulatory_class="ribosome_binding_site" /locus_tag="STM0345" /note="putative RBS for STM0345; RegulonDB:STMS1H000701" CDS 389500..389988 /locus_tag="STM0345" /note="unknown (gi|6707277)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459340.1" /db_xref="GI:16763725" /db_xref="GeneID:1251864" /translation="MHFHKRTLLSVATLGMLAVSVVLMVVWVRNSNHSSINTNEFLCT TRTVTTIQPKDIHADGSLVLDFKMKRITFQYEIKTKDNGVKILYRDVYMKNLHRTAPG VYTFEVSQVKVFATDTAGELLSHLRVLHPEAANEIRISKVGEKTFFYSLNRQLYNVCT AQ" gene 390383..390913 /locus_tag="STM0346" /db_xref="GeneID:1251865" regulatory 390383..390388 /regulatory_class="ribosome_binding_site" /locus_tag="STM0346" /note="putative RBS for STM0346; RegulonDB:STMS1H000702" CDS 390389..390913 /locus_tag="STM0346" /note="unknown (gi|6707276)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459341.1" /db_xref="GI:16763726" /db_xref="GeneID:1251865" /translation="MKRRSSFLVFLGLLLASPLALANDQHTVSFGYAQTHLSSLKNSD SKDLRGFNFKYRYEFNETWGMLGSFTATRNEMENYTWKEGKLHKNGSDSVDYGSLMFG PTYRFNDYVSLYGNAGIATMKFNKHSKEDSFAYGAGVIFNPVKSISIDASWEASRFFA VDTNTFGVSVGYRF" gene 391057..391698 /locus_tag="STM0347" /db_xref="GeneID:1251866" CDS 391057..391698 /locus_tag="STM0347" /note="unknown (gi|6707275)" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_459342.1" /db_xref="GI:16763727" /db_xref="GeneID:1251866" /translation="MINSLSEQLPLKTIGIVLTDDYYTYLGIASLFEDGKCFMFPLNG EYNSCQISASEDIIIIIDGRVLIQGVWKGFKALMQHYPHARRIWLTRRDIGKLYPHGC DRDPDIDPDLAKPVFIEHFIKYACANDVAVGEIAPLTKKEEELLWHFLYKKSMSQIAS SYGMSRKTLYIHRLRICRKYGFKRFFHLLFIYQRSRHIFASKICRVDKNADQA" gene 391703..391933 /locus_tag="STM0348" /db_xref="GeneID:1251867" regulatory 391703..391708 /regulatory_class="ribosome_binding_site" /locus_tag="STM0348" /note="putative RBS for STM0348; RegulonDB:STMS1H000703" CDS 391709..391933 /locus_tag="STM0348" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459343.1" /db_xref="GI:16763728" /db_xref="GeneID:1251867" /translation="MKKLTMRECESINPTMLLAIKILISALDEKTKIRLREHIEKTEQ EIASSIHDSIMTETFLQQMKDIRYILNIVP" gene 391984..392350 /locus_tag="STM0349" /db_xref="GeneID:1251868" regulatory 391984..391989 /regulatory_class="ribosome_binding_site" /locus_tag="STM0349" /note="putative RBS for STM0349; RegulonDB:STMS1H000704" CDS 391991..392350 /locus_tag="STM0349" /note="similar to E. coli orf, hypothetical protein (AAC77104.1); Blastp hit to AAC77104.1 (128 aa), 35% identity in aa 15 - 127" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459344.1" /db_xref="GI:16763729" /db_xref="GeneID:1251868" /translation="MKKILVCFVGLALTACSANSLNYGAEQVRVMTSEPGKECSYLGD ITGSQGNFFTGGWTSNSNLETGARNDLKNKAYKMGGNTVVLLTQRAGQTGSSWHGSGS SKQTNVTLSGNVYRCPR" gene complement(392420..393948) /locus_tag="STM0350" /db_xref="GeneID:1251869" CDS complement(392420..393931) /locus_tag="STM0350" /note="similar to E. coli putative resistance protein (AAC73673.1); Blastp hit to AAC73673.1 (457 aa), 37% identity in aa 7 - 457" /codon_start=1 /transl_table=11 /product="homology to outer membrane efflux protein" /protein_id="NP_459345.3" /db_xref="GI:1109557579" /db_xref="GeneID:1251869" /translation="MRTALIRMISKHNDGNGIMKITFTGYRQTATLATLAFVTTLAGC TMAPKHERPASPTAMVYPYATSTVSGAPDAADIGWRDFFHDPLLQELIAIALRNNRDL RKAGLNVEAARALYRIQRAEMLPTLGIATAMDASRTPADLSVMDESEINRRYEAAGAT TAWELDLWGRVRSLSDQALAAYMALDETYIAARMSLVSEVASAWLTLRADRELLRLTE DTLAAQKSSYTLTTQLARTGNATQLDLRMAEIALRSAEINRAAYTRQLARDRNALELL LGQPLTPELSRRLNEAVTLTEGAIPTTLPGGLPSDLLVRRPDIRAAEYRLRGANARIG AARAAFFPTISLTGSAGTASASLSGLFEPGSGSWRFLPQITLPLFHGGALRADLDRAH VQKQIEIARYENVIQQAFRDVADGLAGQRTLNDQVQSEQRAVEASQIAYELAGLRFQE GVDDYLTLLDTHRMLYGAQQRLVRTRLMQQLNIINLYKALGGGWREYSEKKQG" gene complement(393894..397067) /locus_tag="STM0351" /db_xref="GeneID:1251870" CDS complement(393894..397061) /locus_tag="STM0351" /note="similar to E. coli integral transmembrane protein; acridine resistance (AAC76298.1); Blastp hit to AAC76298.1 (1034 aa), 42% identity in aa 3 - 1030" /codon_start=1 /transl_table=11 /product="multidrug efflux RND transporter permease subunit" /protein_id="NP_459346.1" /db_xref="GI:16763731" /db_xref="GeneID:1251870" /translation="MKFTHFFIARPIFAIVLSLLMLLAGAIAFLKLPLSEYPAVTPPT VQVSASYPGANPQVIADTVAAPLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDP DMAQIQVQNRVSRALPRLPEEVQRIGVVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFA IRQVRDELARLPGVGDVLVWGAGEYAMRVWLDPAKIANRGLTASDIVTALREQNVQVA AGSVGQQPEASAAFQMTVNTLGRLTSEEQFGEIVVKIGADGEVTRLRDVARVTLGADA YTLRSLLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQQNFPQDIEYRIAYDPTVF VRASLQSVAITLLEALVLVVLVVVMFLQTWRASIIPLVAVPVSLVGTFALMHLFGFSL NTLSLFGLVLSIGIVVDDAIVVVENVERHISQGKSPGEAAKKAMDEVTGPILSITSVL TAVFIPSAFLAGLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLRPHHDTAKAD WLTRLMGTVTGGFFHRFNRFFDSASNRYVSAVRRAVRGSVIVMVLYAGFVGLTWLGFH QVPNGFVPAQDKYYLVGIAQLPSGASLDRTEAVVKQMSAIALAEPGVESVVVFPGLSV NGPVNVPNSALMFAMLKPFDEREDPSLSANAIAGKLMHKFSHIPDGFIGIFPPPPVPG LGATGGFKLQIEDRAELGFEAMTKVQSEIMSKAMQTPELANMLASFQTNAPQLQVDID RVKAKSMGVSLTDIFETLQINLGSLYVNDFNRFGRAWRVMAQADAPFRMQQEDIGLLK VRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPAPGFSSGQATDAIEKIV RETLPEGMVFEWTDLVYQEKQAGNSALAIFALAVLLAFLILAAQYNSWSLPFAVLLIA PMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFARAKEHDGADPLTAV LEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAGMLGVTLFGLLLT PVFYVVVRRMALKRENRVDSHDQQA" regulatory complement(393943..393948) /regulatory_class="ribosome_binding_site" /locus_tag="STM0350" /note="putative RBS for STM0350; RegulonDB:STMS1H000705" gene complement(397058..398290) /locus_tag="STM0352" /db_xref="GeneID:1251871" CDS complement(397058..398284) /locus_tag="STM0352" /note="similar to E. coli acridine efflux pump (AAC73565.1); Blastp hit to AAC73565.1 (397 aa), 31% identity in aa 38 - 383" /codon_start=1 /transl_table=11 /product="efflux transporter periplasmic adaptor subunit" /protein_id="NP_459347.3" /db_xref="GI:1109557580" /db_xref="GeneID:1251871" /translation="MRRTFKIMLIAGVIAAIGGVIYMAGEALWDKDNAVGPPASAPPP PSVPVAKALSRTLAPTAEFTGFLAAPETVELRSRVGGTLDAISVPEGRLVSRGQLLFQ IDPRPFEVALDTAVAQLRQAEVLARQAQADFDRIQRLVASGAVSRKNADDVTATRNAR QAQMQSAKAAVAAARLELSWTRITAPIAGRVDRILVTRGNLVSGGVAGNATLLTTIVS HNPMYVYFDIDEATWLKALRHTRSDKNPPVVNMGLTTDNGLPYQGVLDFMGNQMNRST GTIRARAVIPDPDGMLSPGLFARISLPIGEPRETVLIDDLAVSADQGKNYVLIVGKEN QVEYRPVELGQMVDGFRVVTQGVLPGEKIILKGLVRPGMTVAPRLVPMRQNVTDKQTA TLTKADGDSAPKAVRQ" regulatory complement(397062..397067) /regulatory_class="ribosome_binding_site" /locus_tag="STM0352" /note="putative RBS for STM0351; RegulonDB:STMS1H000706" regulatory complement(398285..398290) /regulatory_class="ribosome_binding_site" /locus_tag="STM0352" /note="putative RBS for STM0352; RegulonDB:STMS1H000707" gene 398554..400849 /locus_tag="STM0353" /db_xref="GeneID:1251872" regulatory 398554..398559 /regulatory_class="ribosome_binding_site" /locus_tag="STM0353" /note="putative RBS for STM0353; RegulonDB:STMS1H000708" CDS 398561..400849 /locus_tag="STM0353" /EC_number="3.6.1.-" /note="similar to E. coli putative ATPase (AAC73586.1); Blastp hit to AAC73586.1 (834 aa), 42% identity in aa 99 - 831, 45% identity in aa 4 - 63" /codon_start=1 /transl_table=11 /product="copper-translocating P-type ATPase" /protein_id="NP_459348.1" /db_xref="GI:16763733" /db_xref="GeneID:1251872" /translation="MSQSENRHDTISLLIEGMTCASCVARVEKGIKAVPGVTDATVNL ATERATVRGTASAEAVIAAIEKTGYKARPIETAGQGEDDSEEKKEAERVRLKRDLILA SVLALPVFVLEMGSHLIPGMHEWVIKTIGLQQSWYWQFALTLLVLTIPGRRFYLKGFP ALARLAPDMNSLVAVGTAAAFGYSLVATFTPDLLPEGTVNVYYEAAAVIVALILLGRF LEARAKGRTSEAIKRLVGLQARVAHVLREGRIVDIPVDEVVLGDCVEVRPGERIPVDG EVTEGRSFVDESMITGEPIPVEKSAGSAVVGGTVNQKGALTLRATAVGGQTMLAQIIR LVEQAQGSKLPIQAVVDKVTLWFVPMVMLIAALTFVVWLAFGPSPALTFALINGVAVL IIACPCAMGLATPTSIMVGTGRGAEMGVLFRKGEALQLLKDAKVVAVDKTGTLTEGRP VLTDLDVASGFERREVLAKVAAVESRSEHPIARAIVVSAEEEGIALPGMSGFESVTGM GVYATVDGTRVDVGADRYMREIGVDISGFATTAERLGQEGKSPLYAAIDGQLAAIIAV ADPIKPSTPAAINALHQLGIKVAMITGDNARTAQAIARQLGIDDVVAEVLPEGKVEAI RRLKAAYGQVAFVGDGINDAPALAESDVGLAIGTGTDVAVESADVVLMSGNLQGVPNA IALSKATIRNIHQNLFWAFAYNTALIPVAAGALFPVWGILLSPVFAAGAMAMSSVFVL GNALRLRRFRAPMATPSDTSTT" gene 400853..401325 /locus_tag="STM0354" /db_xref="GeneID:1251873" regulatory 400853..400858 /regulatory_class="ribosome_binding_site" /locus_tag="STM0354" /note="putative RBS for STM0354; RegulonDB:STMS1H000710" CDS 400861..401325 /locus_tag="STM0354" /note="similar to E. coli putative transcriptional regulator (AAC73589.1); Blastp hit to AAC73589.1 (135 aa), 42% identity in aa 1 - 126" /codon_start=1 /transl_table=11 /product="Cu(I)-responsive transcriptional regulator" /protein_id="NP_459349.1" /db_xref="GI:16763734" /db_xref="GeneID:1251873" /translation="MNIGKAAKASKVSAKMIRYYEQIGLIPAASRTDSGYRAYTQADV NQLHFIRRARDLGFSVAEISDLLNLWNNQSRQSADVKRLAQTHIDELDRRIQNMQHMA QTLKALIHCCAGDALPDCPILHTLGQPDDSEPEARTGAVLRRPRRHGLAKRL" gene 401396..401597 /locus_tag="STM0355" /db_xref="GeneID:1251874" regulatory 401396..401401 /regulatory_class="ribosome_binding_site" /locus_tag="STM0355" /note="putative RBS for STM0355; RegulonDB:STMS1H000711" CDS 401403..401597 /locus_tag="STM0355" /codon_start=1 /transl_table=11 /product="heavy metal transport/detoxification protein" /protein_id="NP_459350.1" /db_xref="GI:16763735" /db_xref="GeneID:1251874" /translation="MQFHIDDMTCGGCASTVKKTILTLDANATVRTDPATRLVDVETS LSAEQIAAALQKAGFPPRER" gene 401883..403143 /locus_tag="STM0356" /db_xref="GeneID:1251875" regulatory 401883..401888 /regulatory_class="ribosome_binding_site" /locus_tag="STM0356" /note="putative RBS for STM0356; RegulonDB:STMS1H000712" CDS 401890..403143 /locus_tag="STM0356" /note="similar to E. coli putative transport protein (AAC77235.1); Blastp hit to AAC77235.1 (425 aa), 28% identity in aa 33 - 412" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_459351.1" /db_xref="GI:16763736" /db_xref="GeneID:1251875" /translation="MYTPLNWTTTQRHVAFACFTSWMLDAFDFFILVFVLSDLAEWFH ASVSDVSIAIMLTLAVRPIGALLFGRMAEKYGRRPILMLNILFFTVFELLSAWSPTFM AFLIFRVMYGVAMGGIWGVASSLAMETIPDRSRGLMSGIFQAGYPCGYLFASVIFGLF YSMVGWRGMFLIGALPVVLLPYIWFKVPESPVWLAARARKENTALLPVLRKQWKLCLY LVLVMAFFNFFSHGTQDLYPTFLKMQHGFDPHLISIIAIFYNIAAMLGGIFYGTLSER IGRKKAIMIAAFLALPVLPLWAFSSGSFTIGLGAFLMQFMVQGAWGVVPTWLNELVPA NARAVLPGFVYQLGNLLASVNATLQARIAETHGGNYGLAMAIVAGAVAILICVFVAFG RETRGVVISGTDSDALPESAISHRT" gene 403326..405290 /gene="mod" /locus_tag="STM0357" /db_xref="GeneID:1251876" regulatory 403326..403331 /regulatory_class="ribosome_binding_site" /gene="mod" /locus_tag="STM0357" /note="putative RBS for mod; RegulonDB:STMS1H000713" CDS 403332..405290 /gene="mod" /locus_tag="STM0357" /note="type iii restriction-modification system stylti enzyme mod (stylti methyltransferase) (SW:T3MO_SALTY)" /codon_start=1 /transl_table=11 /product="restriction endonuclease" /protein_id="NP_459352.1" /db_xref="GI:16763737" /db_xref="GeneID:1251876" /translation="MLKDNQKHNESVAPNSAFLSELQRALPEFFTADRYNEQGELIAK GGFDLARFERALKARNIDELTSGYQIDFIGKDYAKKQAGEKSVTVIVPDVEHNTLAEN KNSHNLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYPDHFEYSDRALQD MFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFISIDDNEYANLK LMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAKTGQGALRLEPLSKEY IQKSYKEPTEQFPEGKWRPVPLTVSKGLSGGGYTYKITTPNGTVHERLWAYPEASYQK LVADNLVYFGKDNGGIPQRVMYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFD TPKPTALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQAL SNNTIAKKAGYNTIDEISRERITRVAAKIRANNPATNSDLGFKHYRFATPTQQTLDDL DSFDIATGHFINTSGQLAAFTESGFTDMINPFSARGLGVPGGASGEETLLTTWLVADG YKMDIDVQTVDFSGYCARYVDNTRLYLIDERWGTEQTRDLLNHIGTHQLPVQTIVIYG YSFDLESIRELEIGLKQLDQKVNLVKRY" gene 405293..408272 /gene="res" /locus_tag="STM0358" /db_xref="GeneID:1251877" regulatory 405293..405298 /regulatory_class="ribosome_binding_site" /gene="res" /locus_tag="STM0358" /note="putative RBS for res; RegulonDB:STMS1H000714" CDS 405300..408272 /gene="res" /locus_tag="STM0358" /note="type iii restriction-modification system stylti enzyme res (SW:T3RE_SALTY)" /codon_start=1 /transl_table=11 /product="DNA restriction (DNA helicase)" /protein_id="NP_459353.3" /db_xref="GI:1109557581" /db_xref="GeneID:1251877" /translation="MMNILLEELPHQEQALAAILASFTGIDHAQADHNHYANPLIKER YDDKANIDVKMETGTGKTYVYTRLMYELHQKYGLFKFVLVVPTPAIKEGARNFITSDY ARQHFSQFYENTRMELCTINAGDFKVKSGRKNFPAQLLSFTDASRRDSHTIQVLLINA QMLNSASMTRDDYDQTLLGGLTSPVKGLQMTRPVVIIDEPHRFARDNKFYRAIQAIQP QMIVRFGATFPDIVEGKGKNKCVRKDYYRRQPQFDLNAVDSFNDGLVKGIDIYYPNLP EEQANNRYIVDSVTAKKLILRRGSKIAEVGVGENLADVDAGFEGSIEYAGSKMLSNDL ELEAGMALVPGTFGASYQELIIQDAIDKHFDTEQANFLRSNEPENNAPRIKTLSLFFI DSIKSYRDDEGWLKVTFERLLKKKLTQLIDDYQRKTLPREVEYLSFLQATLASLHSDN QNVHAGYFGEDRGSGDEAIQAEVDDILKNKEKLLSFSDHHGNWETRRFLFSKWTLREG WDNPNVFVIAKLRSSGSESSKIQEVGRGLRLPVDENGHRVHQEEWPSRLSFLIGYDEK AFASMLVDEINRDSKVQLNEQKLDEAMITLIVTERQKVDPAFTELRLLEDLDDKKLIN RSNEFKPSVTLNGETKSGFAWLLEFYPELTQARVRADRIRDNKPASRLRVRLRKENWE QLSSIWEQFSRRYMLQFERSGASLEQIAAEVLRDPALYIRQKPSQVQQRLVSNEDNGR FEVAQREGELAASEFMAGMKYGHFLKQLALRTSLPVNVLHPVLMAMLRDVLHGDSRYL SEISLDNMTRALQTRINAHFAQRHDYLPLDFQASTSVFDSTARQFREEISAEIVGKNV DENAIDDPRSLYQIPPLRYDSVDPELPLLKYDYPQQVSVFGKLPKRAIQIPKYTGGST TPDFVYRIERQDADSVYLLVETKAENMRVGDQVILDAQRKFFDMLRRQNINVEFAEAT SAPAVFSTINGLIEGKAN" gene 408544..408650 /locus_tag="STM0359" /db_xref="GeneID:1251878" regulatory 408544..408549 /regulatory_class="ribosome_binding_site" /locus_tag="STM0359" /note="putative RBS for STM0359; RegulonDB:STMS1H000715" CDS 408549..408650 /locus_tag="STM0359" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459354.1" /db_xref="GI:16763739" /db_xref="GeneID:1251878" /translation="MLNRYYRFAVEKDDPSEAPESGDKPDSQPQKKS" gene 408761..410170 /locus_tag="STM0360" /db_xref="GeneID:1251879" regulatory 408761..408766 /regulatory_class="ribosome_binding_site" /locus_tag="STM0360" /note="putative RBS for STM0360; RegulonDB:STMS1H000716" CDS 408767..410170 /locus_tag="STM0360" /EC_number="1.10.3.-" /EC_number="1.2.1.41" /note="similar to E. coli probable third cytochrome oxidase, subunit I (AAC74063.1); Blastp hit to AAC74063.1 (514 aa), 38% identity in aa 2 - 316, 38% identity in aa 381 - 512" /codon_start=1 /transl_table=11 /product="cytochrome ubiquinol oxidase subunit I" /protein_id="NP_459355.1" /db_xref="GI:16763740" /db_xref="GeneID:1251879" /translation="MEFDAFFLARLQFAFTVSFHIIFPAITIGLASYLVVLEGLWLKT RNPVWRSLYQFWLKIFAVNFGMGVVSGLVMAYQFGTNWSGFSQFAGSITGPLLTYEVL TAFFLEAGFLGVMLFGWNKVGPGLHFLSTCMVALGTLMSTFWILASNSWMHTPQGFEI HNGQVVPVDWFAVIFNPSFPYRLLHMSVAAFLSSAMFVGASAAWHLLKGNDTPAIRRM FSMALWMAVVVAPVQALIGDMHGLNTLKHQPVKIAAIEGHWENTPGEPTPLTLVGWPD MEAERTRYALEIPALGSLILTHSLDKQVPALKDYPKEDRPNSTVVFWSFRLMVGMGVL MIFLGLASLWLRYRRRLYHSRPFMHFALWMGPSGLIAILAGWVTTEVGRQPWVVYGLL RTRDAVSAHSTLQMSISLLAFFVVYSLVFGVGYIYMIRLIQKGPQPAETPTAETDGRP ARPISAVGESLEQEKRE" gene 410159..411177 /locus_tag="STM0361" /db_xref="GeneID:1251880" regulatory 410159..410164 /regulatory_class="ribosome_binding_site" /locus_tag="STM0361" /note="putative RBS for STM0361; RegulonDB:STMS1H000717" CDS 410167..411177 /locus_tag="STM0361" /EC_number="1.10.3.-" /EC_number="1.2.1.41" /note="similar to E. coli cytochrome d terminal oxidase polypeptide subunit II (AAC73828.1); Blastp hit to AAC73828.1 (379 aa), 34% identity in aa 7 - 221, 22% identity in aa 121 - 366" /codon_start=1 /transl_table=11 /product="cytochrome BD2 subunit II" /protein_id="NP_459356.1" /db_xref="GI:16763741" /db_xref="GeneID:1251880" /translation="MTIDLPVIWFAIIVFATLMYIVMDGFDLGVGILFPFIRDKHDRD VMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVITDALTIPLVVMLLGLIFRGVAFE FRFKATESHRAFWDKSFIVGSILATFAQGVVVGAVVSGFQVEGRTFSGSQLDWLTPFN LFCGVGLVVTYALLGATWLIMKSEDPLHSRMCALSRPLLIVLLLVMGGVSVWTPLTHD DIAERWFTLPNLYYFLPVPVLVLAFSVWLWRSVKKPESHARPFILTLGLIFLGFSGLG ISIWPNIIPPDISLYAAAAPPQSQSFMLVGALIIIPIILAYTFWSYYVFRGKVRHGEG YH" gene 411177..411308 /locus_tag="STM0362" /db_xref="GeneID:1251881" CDS 411177..411308 /locus_tag="STM0362" /codon_start=1 /transl_table=11 /product="DUF2474 domain-containing protein" /protein_id="NP_459357.2" /db_xref="GI:1127432617" /db_xref="GeneID:1251881" /translation="MVKVKKWSRRVVWMVAIWCASVLLLAGVGMLFRLLMTSAGFRS" gene 411510..412518 /locus_tag="STM0363" /db_xref="GeneID:1251882" regulatory 411510..411515 /regulatory_class="ribosome_binding_site" /locus_tag="STM0363" /note="putative RBS for STM0363; RegulonDB:STMS1H000719" CDS 411514..412518 /locus_tag="STM0363" /note="putative XylS/AraC transcriptional activator (gi|3094022)" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="NP_459358.1" /db_xref="GI:16763743" /db_xref="GeneID:1251882" /translation="MSPISCHSSAAPAMKKIFSVSDFIAFGERYGIDYRFPALPQYTQ SSPVLHGDIEEIALPGGICITRSDVHVLQPYETTSRHSSPLYMLVVLEGNVALAVNEQ TFLLSAGMAFCSQLSEQQTIRAHHGADSKLRTLSLGMYPDGGWRERLPVSLADEWENS ATSARVWQVPEFLLSGLRYAQQPGPHAASRQLMLEGIMLQLLGYALNLCQPATQKRGL PVTGEYQRLELIRRLLEQTPEKAYTLNELARRAAMSPSSLRCKFRHAYGCTVFDYLRD CRLARARRYLMEGYSVQQAAWMSGYQHATNFATAFRRRYGCSPGELRDASLTASRHCA " gene 412664..414772 /gene="foxA" /locus_tag="STM0364" /db_xref="GeneID:1251883" CDS 412664..414772 /gene="foxA" /locus_tag="STM0364" /note="ferrioxamine B receptor precursor. (SW:FOXA_SALTY)" /codon_start=1 /transl_table=11 /product="ferrioxamine receptor" /protein_id="NP_459359.1" /db_xref="GI:16763744" /db_xref="GeneID:1251883" /translation="MPLEMFMFATTRMALLIGGAIGGATFPLFAQETTKNDTVIVTSP VQSGATKLATPDIETPQSVSIITRQQFEEQGATSVRQAVSYTPGVYSNQIGASNRFDY IVLRGFSDGSLDNVYLDGLKMMGDTNSHSSLVVDPWFLEDIEVVRGPASVLYGRSSPG GIVALTSRKPAFDAGGEVKLFAGNNNQRGAAFDVTGPLDDNERVAARLSGMTRYADSQ FTPLKEERYALMPSLTWRITDRTRLDLMAYPHRDPEGGSHSGLPYQGTVVPYNGGKIS NTFFEGEDDYDKYDRRENMVGYNIEHLFDNGWSVRQKLRYLHTKVTLNQVYAAGWLNE TALNRGYSGSGEKMSAIALDNQLDGSVDTGAINHRLLVGIDYQDRSNHTTGYYGAFPP IDAFNPVYGAQPDYITLYSREKHKLRQTGYYLQDQMSWDRWRFTLGGRYDRVSVSNID KLHDSRSDLDKNNVSTRAALLYLFDNGVAPYLSYSTAFTPTSFADENGNVLEPMKGKQ WEAGVKYEPPGGNSQFSAAVYRINQTNIATKEEPTDPYRSIGEIESKGVELEAISHLS DSVRLQAAYTYTDIRYKKSSPQEQGKRAVYAPRNQASAWLSYDVKSGLLEGLTLGSGI RYVNGVTSDRLNTHTLPSYTLVDMVVGYDLSSIGLNGLSAQLNVNNLTDKRYVAACNS LSYCYFGAERSIVGSVSWAF" gene complement(414813..415461) /gene="yahN" /locus_tag="STM0365" /db_xref="GeneID:1251884" CDS complement(414813..415445) /gene="yahN" /locus_tag="STM0365" /note="similar to E. coli putative cytochrome subunit of dehydrogenase (AAC73431.1); Blastp hit to AAC73431.1 (223 aa), 86% identity in aa 14 - 223" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459360.1" /db_xref="GI:16763745" /db_xref="GeneID:1251884" /translation="MEPFHAVVLTVSLFVLTFFNPGANLFVVVQTSLASGRRAGVITG LGVATGDAFYSGLGLFGLATLITQCEAVFSLIKIVGGAYLLWFAWNSIRHQATPQMST LQTPIAAPWTIFFRRGLMTDLSNPQTVLFFISIFSVTLSAETPTWARLMAWAGIVLSS VIWRIFLSQAFSLPAVRRAYGRIQRIASRVIGAIIGMFALRLLYEGVTHR" regulatory complement(415456..415461) /regulatory_class="ribosome_binding_site" /gene="yahN" /locus_tag="STM0365" /note="putative RBS for yahN; RegulonDB:STMS1H000720" gene 415665..415952 /gene="yahO" /locus_tag="STM0366" /db_xref="GeneID:1251885" regulatory 415665..415670 /regulatory_class="ribosome_binding_site" /gene="yahO" /locus_tag="STM0366" /note="putative RBS for yahO; RegulonDB:STMS1H000721" CDS 415677..415952 /gene="yahO" /locus_tag="STM0366" /note="similar to E. coli orf, hypothetical protein (AAC73432.1); Blastp hit to AAC73432.1 (91 aa), 72% identity in aa 1 - 91" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459361.1" /db_xref="GI:16763746" /db_xref="GeneID:1251885" /translation="MKTGYKVMLGALAFVVTNVYAAEIMKKTDFDKVASEYTKIGTIS TTGEMSPLDAREDLIKKADEKGADVVVLTSGQTENKIHGTADIYKKK" gene complement(416088..417730) /gene="prpR" /locus_tag="STM0367" /db_xref="GeneID:1251886" CDS complement(416088..417713) /gene="prpR" /locus_tag="STM0367" /note="propionate catabolism operon regulatory protein. (SW:PRPR_SALTY)" /codon_start=1 /transl_table=11 /product="propionate catabolism operon regulatory protein PrpR" /protein_id="NP_459362.1" /db_xref="GI:16763747" /db_xref="GeneID:1251886" /translation="MTTAHSAPRDNSDKPVIWTVSVTRLFELFRDISLEFDHLATITP IQLGFEKAVTYIRKKLATERCDAIIAAGSNGAYLKSRLSIPVILIKPSGFDVLQALAK AGKLTSSIGIVTYQETIPALLAFQKTFHLRLEQRSYVTEEDARGQINELKANGIEAVV GAGLITDLAEEAGMTAIFIYSAATVRQAFHDALDMTRLTRRQRVDYPSGKGLQTRYEL GDIRGQSPQMEQLRQTITLYARSRAAVLIQGETGTGKELAAQAIHQTFFHRQPHRQNK PSPPFVAVNCGAITESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM PLPLQTRLLRVLEEKAVTRVGGHQPIPVDVRVISATHCDLDREIMQGRFRPDLFYRLS ILRLTLPPLRERQADILPLAESFLKQSLAAMEIPFTESIRHGLTQCQPLLLAWRWPGN IRELRNMMERLALFLSVDPAPTLDRQFMRQLLPELMVNTAELTPSTVDANALQDVLAR FKGDKTAAARYLGISRTTLWRRLKAGAKDQSDN" regulatory complement(417725..417730) /regulatory_class="ribosome_binding_site" /gene="prpR" /locus_tag="STM0367" /note="putative RBS for prpR; RegulonDB:STMS1H000722" gene 417967..418865 /gene="prpB" /locus_tag="STM0368" /db_xref="GeneID:1251887" regulatory 417967..417972 /regulatory_class="ribosome_binding_site" /gene="prpB" /locus_tag="STM0368" /note="putative RBS for prpB; RegulonDB:STMS1H000723" CDS 417978..418865 /gene="prpB" /locus_tag="STM0368" /EC_number="2.7.8.23" /note="putative carboxyvinyl-carboxyphosphonate phosphorylmutase. (SW:CPPM_SALTY)" /codon_start=1 /transl_table=11 /product="methylisocitrate lyase" /protein_id="NP_459363.1" /db_xref="GI:16763748" /db_xref="GeneID:1251887" /translation="MSLHSPGQAFRAALAKENPLQIVGAINANHALLAQRAGYQAIYL SGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCPLPLLVDADIGFGSSAFNVARTVK SIAKAGAAALHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDARTDPNFVIMARTD ALAVEGLEAALDRAQAYVDAGADMLFPEAITELSMYRRFADVAQVPILANITEFGATP LFTTDELRSAHVAMALYPLSAFRAMNRAAEKVYTVLRQEGTQKNVIDIMQTRNELYES INYYQFEEKLDALYRNKKS" gene 418979..420157 /gene="prpC" /locus_tag="STM0369" /db_xref="GeneID:1251888" regulatory 418979..418984 /regulatory_class="ribosome_binding_site" /gene="prpC" /locus_tag="STM0369" /note="putative RBS for prpC; RegulonDB:STMS1H000724" CDS 418988..420157 /gene="prpC" /locus_tag="STM0369" /EC_number="2.3.3.5" /note="methylcitrate synthase. (SW:CISZ_SALTY)" /codon_start=1 /transl_table=11 /product="2-methylcitrate synthase" /protein_id="NP_459364.1" /db_xref="GI:16763749" /db_xref="GeneID:1251888" /translation="MTDTTILQNNTHVIKPKKSVALSGVPAGNTALCTVGKSGNDLHY RGYDILDLAEHCEFEEVAHLLIHGKLPTRDELNAYKSKLKALRGLPANVRTVLEALPA ASHPMDVMRTGVSALGCTLPEKEGHTVSGARDIADKLLASLSSILLYWYHYSHNGERI QPETDDDSIGGHFLHLLHGEKPTQSWEKAMHISLVLYAEHEFNASTFTSRVIAGTGSD VYSAIIGAIGALRGPKHGGANEVSLEIQQRYETPDEAEADIRKRVENKEVVIGFGHPV YTIADPRHQVIKRVAKQLSEEGGSLKMYHIADRLETVMWETKKMFPNLDWFSAVSYNM MGVPTEMFTPLFVIARVTGWAAHIIEQRQDNKIIRPSANYTGPEDRPFVSIDDRC" gene 420182..421648 /gene="prpD" /locus_tag="STM0370" /db_xref="GeneID:1251889" regulatory 420182..420187 /regulatory_class="ribosome_binding_site" /gene="prpD" /locus_tag="STM0370" /note="putative RBS for prpD; RegulonDB:STMS1H000725" CDS 420197..421648 /gene="prpD" /locus_tag="STM0370" /note="PRPD protein. (SW:PRPD_SALTY)" /codon_start=1 /transl_table=11 /product="2-methylcitrate dehydratase" /protein_id="NP_459365.1" /db_xref="GI:16763750" /db_xref="GeneID:1251889" /translation="MSTQELNIRPDFDREIVDIVDYVMNYEITSKVAYDTAHYCLLDT LGCGLEALEYPACKKLLGPIVPGTVVPNGARVPGTQFQLDPVQAAFNIGAMIRWLDFN DTWLAAEWGHPSDNLGGILATADWLSRNAVAAGKAPLTMKQVLSGMIKAHEIQGCIAL ENAFNRVGLDHVLLVKVASTAVVAEMLGLTRDEILNAVSLAWVDGQSLRTYRHAPNTG TRKSWAAGDATSRAVRLALMAKTGEMGYPSALTAKTWGFYDVSFKGETFRFQRPYGSY VMENVLFKISFPAEFHSQTAVEAAMTLYEQMQAAGKTAADIEKVTIRTHEACLRIIDK KGPLNNPADRDHCIQYMVAVPLLFGRLTAADYEDEVAQDKRIDALREKIVCYEDPAFT ADYHDPEKRAIGNAITVEFTDGSRFGEVVVEYPIGHARRRADGIPKLIEKFKINLARQ FPTRQQQRILDVSLDRARLEQMPVNEYLDLYVI" gene 421677..423575 /gene="prpE" /locus_tag="STM0371" /db_xref="GeneID:1251890" regulatory 421677..421682 /regulatory_class="ribosome_binding_site" /gene="prpE" /locus_tag="STM0371" /note="putative RBS for prpE; RegulonDB:STMS1H000726" CDS 421689..423575 /gene="prpE" /locus_tag="STM0371" /note="PRPE protein. (SW:PRPE_SALTY)" /codon_start=1 /transl_table=11 /product="propionate--CoA ligase" /protein_id="NP_459366.1" /db_xref="GI:16763751" /db_xref="GeneID:1251890" /translation="MSFSEFYQRSINEPEAFWAEQARRIDWRQPFTQTLDHSRPPFAR WFCGGTTNLCHNAVDRWRDKQPEALALIAVSSETDEERTFTFSQLHDEVNIVAAMLLS LGVQRGDRVLVYMPMIAEAQITLLACARIGAIHSVVFGGFASHSVAARIDDARPALIV SADAGARGGKILPYKKLLDDAIAQAQHQPKHVLLVDRGLAKMAWVDGRDLDFATLRQQ HLGASVPVAWLESNETSCILYTSGTTGKPKGVQRDVGGYAVALATSMDTIFGGKAGGV FFCASDIGWVVGHSYIVYAPLLAGMATIVYEGLPTYPDCGVWWKIVEKYQVNRMFSAP TAIRVLKKFPTAQIRNHDLSSLEALYLAGEPLDEPTASWVTETLGVPVIDNYWQTESG WPIMALARALDDRPSRLGSPGVPMYGYNVQLLNEVTGEPCGINEKGMLVIEGPLPPGC IQTIWGDDARFVKTYWSLFNRQVYATFDWGIRDAEGYYFILGRTDDVINIAGHRLGTR EIEESISSYPNVAEVAVVGIKDALKGQVAVAFVIPKQSDTLADREAARDEENAIMALV DNQIGHFGRPAHVWFVSQLPKTRSGKMLRRTIQAICEGRDPGDLTTIDDPASLQQIRQ AIEE" gene complement(423679..424663) /gene="hemB" /locus_tag="STM0372" /db_xref="GeneID:1251891" CDS complement(423679..424653) /gene="hemB" /locus_tag="STM0372" /EC_number="4.2.1.24" /note="similar to E. coli 5-aminolevulinate dehydratase = porphobilinogen synthase (AAC73472.1); Blastp hit to AAC73472.1 (335 aa), 93% identity in aa 12 - 335" /codon_start=1 /transl_table=11 /product="delta-aminolevulinic acid dehydratase" /protein_id="NP_459367.1" /db_xref="GI:16763752" /db_xref="GeneID:1251891" /translation="MTDLIHRPRRLRKSAALRAMFEETTLSLNDLVLPIFVEEELDDY KAIDAMPGVMRIPEKQLAREIERIANAGIRSVMTFGISHHTDDTGSDTWKEDGLVARM SRICKQTVPEMIVMSDTCFCEYTSHGHCGVLCEHGVDNDATLANLGKQAVIAAAAGAD FIAPSAAMDGQVQAIRQALDAAGFTDTAIMSYSTKFASSFYGPFREAAGTALKGDRKT YQMNPMNRREAIRESLLDEAQGADCLMVKPAGAYLDVLREIRERTELPLGAYQVSGEY AMIKFAAMAGAIDEEKVVLESLGSIKRAGADLIFSYFALDLAEKNILR" regulatory complement(424658..424663) /regulatory_class="ribosome_binding_site" /gene="hemB" /locus_tag="STM0372" /note="putative RBS for hemB; RegulonDB:STMS1H000727" gene 425151..428102 /gene="yaiU" /locus_tag="STM0373" /db_xref="GeneID:1251892" regulatory 425151..425156 /regulatory_class="ribosome_binding_site" /gene="yaiU" /locus_tag="STM0373" /note="putative RBS for yaiU; RegulonDB:STMS1H000728" CDS 425166..428102 /gene="yaiU" /locus_tag="STM0373" /note="similar to 3rd module of ATP-binding components of transporters; similar to E. coli putative flagellin structural protein (AAC73477.1); Blastp hit to AAC73477.1 (467 aa), 91% identity in aa 1 - 467" /codon_start=1 /transl_table=11 /product="autotransporter outer membrane beta-barrel domain-containing protein" /protein_id="NP_459368.1" /db_xref="GI:16763753" /db_xref="GeneID:1251892" /translation="MHSWKKKLVVSQLALACTLAITSQANATTYDTWTYYDNPTTALD WNNMDAAGTVDGNYVNYSGFVYYNNANGDFDQTFNGDTVNGTISTYYLNHDYNDATSN ELNISNSVIHGSITSMLPIGYYDRFDTLDHDGYSEYYRFNNGTDTVDGNWYDGDVFTL NIANSTIDDDYEAFYFTDSYKDGDVTKYTNETFDVSEGVAVNLDVESNINISNNSRVA GIALSQGNTYNNTYTTESHNWDNNINVFDSTVTSGSDYILDSAYTTDTGTFGTGHFGN SDEPSDYTGAGDVALSFTDDNGASDYAMKNNVYFSNSTLMGDVKFTSNWNANFDADGD DTNGDGVPDTNHGWADDGLNVDELNLTLDNGSKWVGQATYTVDTTSRMYDVETNSLTP GATLEDNAWNRIVGNEVFQSGVFNVTLNNGSEWDTVGDSTVDTLAVNNGSQVNVSNSD LTSDTIDLTNGSSLNIGEGGYVDTDHLTIDSYSTVGLTESTGWSTYSNLYANTITVTN GGVLDVNVGQFDTEVFSTDKLELTSGNTADHNGNVVSGVFNIHSSDYVLNADLVNDRT WDTTQANYGYGTIAMNSDGHLTINGNGDINNGDELDNSSVDNVVAATGNYKVRIDNAT GAGSVADYKGNELIYVNDVNTDATFSAANKADLGAYTYQAKQEGNTVVLEQMELTDYA NMALSIPSANTNIWNLEQDTVGTRLTNARHGLADNGGAWVSYFGGNFNGDNGTINYDQ DVNGIMVGVDTKVDGNNAKWIVGAAAGFAKGDLSDRTGQVDQDSQSAYIYSSARFANN IFVDGNLSYSHFNNDLSANMSDGTYVDGNTSSDAWGFGLKLGYDLKLGDAGYVTPYGS VSGLFQSGDDYQLSNDMKVDGQSYDSMRYELGVDAGYTFTYSEDQALTPYFKLAYVYD DSNNDADVNGDSIDNGVEGSAVRVGLGTQFSFTKNFSAYTDANYLGGGDVDQDWSANV GVKYTW" gene 428177..428811 /gene="yaiV" /locus_tag="STM0374" /db_xref="GeneID:1251893" regulatory 428177..428182 /regulatory_class="ribosome_binding_site" /gene="yaiV" /locus_tag="STM0374" /note="putative RBS for yaiV; RegulonDB:STMS1H000729" CDS 428188..428811 /gene="yaiV" /locus_tag="STM0374" /note="similar to E. coli orf, hypothetical protein (AAC73478.1); Blastp hit to AAC73478.1 (222 aa), 71% identity in aa 16 - 222" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_459369.1" /db_xref="GI:16763754" /db_xref="GeneID:1251893" /translation="MLSLSKPLQEFYRLDKCLSKHGTRFEFVNDKEIICSPDESNTHT FVILEGVVSLVRGDKVLIGIVQAPFIFGLADGVAKKEAQYKLIAESGCIGYRLSSSQT LAIIEQNQLWREAFCWIVWKSQVLELRDKQLIGNNSYDQIRATLMTMIEWDEELRSRI GVMNYIHQRTRVSRSVVAEVLAALRKGNYIEMNKGKLISINRLPSEY" gene complement(428856..429986) /gene="ampH" /locus_tag="STM0375" /db_xref="GeneID:1251894" CDS complement(428856..429986) /gene="ampH" /locus_tag="STM0375" /note="similar to E. coli putative enzyme (AAC73479.1); Blastp hit to AAC73479.1 (385 aa), 91% identity in aa 10 - 385" /codon_start=1 /transl_table=11 /product="penicillin- binding protein" /protein_id="NP_459370.3" /db_xref="GI:1109557582" /db_xref="GeneID:1251894" /translation="MLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMAL VVIDGNQRVFRSFGDTRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLNDP LSKYAPPGARVPTYQGTPITLVNLATHTSALPREQPGGAAHRPVFVWPTREQRWNWLS TATLKVAPGSQAAYSNLAFDLLADALATASGKPYTQLFEEKITRPLGMKDTTFTPSPD QCKRLMVAEKGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYHRSQQADRMQT LIYQRIQLKKIIGMDVPGKADALGLGWVYMAPKDGRPGIIQKTGGGGGFITYMAMIPQ YNIGAFVVVTRSPLTRFTNMSDGINDLVTELSGNKPIAIPAS" gene 430348..431580 /gene="sbmA" /locus_tag="STM0376" /db_xref="GeneID:1251895" regulatory 430348..430353 /regulatory_class="ribosome_binding_site" /gene="sbmA" /locus_tag="STM0376" /note="putative RBS for sbmA; RegulonDB:STMS1H000730" CDS 430360..431580 /gene="sbmA" /locus_tag="STM0376" /note="similar to E. coli sensitivity to microcin B17, possibly envelop protein (AAC73480.1); Blastp hit to AAC73480.1 (406 aa), 92% identity in aa 1 - 406" /codon_start=1 /transl_table=11 /product="peptide transporter" /protein_id="NP_459371.1" /db_xref="GI:16763756" /db_xref="GeneID:1251895" /translation="MFKSFFPKPGPFFMSAFVWALIAVIFWQAGGGDWVARLVGASDE VPISAARFWSLDYLIFYAYYLICVGLFATFWFIYSPHRWQYWSILGTSLIIFVTWFLV EVGVAVNAWYAPFYDLIQTALSSPHKVTLGQFYHEVGVFLGIALIAVVIGVLNNFFVS HYVFRWRTAMNEHYMAHWQYLRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLIA FLPVLVTLSAHVPNLPIVGHIPYGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVE AAYRKELVYGEDDASRATPPTVRELFSAVRHNYFRLYFHYMYFNIARILYLQVDNVFG LFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTLVELMSIYKRLRSFERQ LDGQPVQEVTHSFS" gene 431584..432689 /gene="yaiW" /locus_tag="STM0377" /db_xref="GeneID:1251896" regulatory 431584..431589 /regulatory_class="ribosome_binding_site" /gene="yaiW" /locus_tag="STM0377" /note="putative RBS for yaiW; RegulonDB:STMS1H000731" CDS 431595..432689 /gene="yaiW" /locus_tag="STM0377" /note="similar to E. coli orf, hypothetical protein (AAC73481.1); Blastp hit to AAC73481.1 (364 aa), 85% identity in aa 1 - 362" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459372.1" /db_xref="GI:16763757" /db_xref="GeneID:1251896" /translation="MSAASRLYPLPFLAVAILAGCSSQSGQPVSKGEKPVDVASVVRQ KMPASVKDREAWAKDIATTFKSQGLAPTVENICSVLAVAQQESGYQADPVVPGLSKIA WQEIDRRAERLHIPLFLVHTALKINSPNGKSYSERLDTVKTEKQLSAIFDDFINMVPM GQTLFGSYNPVHTGGPMQVSIAFAEQHAKGYPWKMTGTVRQEVFTRRGGLWFGTYHLL NYPANYSAPVFRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYNSKEPGKTE LAVRKLAGQLGMSEREIRSQLEKGDSLAFEKTALYKKVYKLAEAKTGKTLAREMLPGI QLESPKITRKLTTAWFAKRVDERRARCMGR" gene complement(432727..433047) /gene="yaiY" /locus_tag="STM0378" /db_xref="GeneID:1251897" CDS complement(432727..433035) /gene="yaiY" /locus_tag="STM0378" /note="similar to E. coli orf, hypothetical protein (AAC73482.1); Blastp hit to AAC73482.1 (102 aa), 86% identity in aa 1 - 102" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459373.1" /db_xref="GI:16763758" /db_xref="GeneID:1251897" /translation="MADFTLSKSLFSGKHRETSSTPGNIAYAIFVLFCFWAGAQLLNL LVHAPGIYEHLMQVQDTGRPRVEIGLGVGTIFGLVPFLTGCLIFAVIAAFLRWRHRHQ " regulatory complement(433042..433047) /regulatory_class="ribosome_binding_site" /gene="yaiY" /locus_tag="STM0378" /note="putative RBS for yaiY; RegulonDB:STMS1H000732" gene 433292..433518 /gene="yaiZ" /locus_tag="STM0379" /db_xref="GeneID:1251898" regulatory 433292..433297 /regulatory_class="ribosome_binding_site" /gene="yaiZ" /locus_tag="STM0379" /note="putative RBS for yaiZ; RegulonDB:STMS1H000733" CDS 433303..433518 /gene="yaiZ" /locus_tag="STM0379" /note="similar to E. coli orf, hypothetical protein (AAC73483.1); Blastp hit to AAC73483.1 (114 aa), 84% identity in aa 45 - 114" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459374.1" /db_xref="GI:16763759" /db_xref="GeneID:1251898" /translation="MRLPVKIRRDWHYYAFSIGLIFILNGVVGLLGFEAKGWQTYGVG LVTWIISFWLAGFIIRRREEDEVKDAR" gene complement(433544..434656) /gene="ddlA" /locus_tag="STM0380" /db_xref="GeneID:1251899" CDS complement(433544..434638) /gene="ddlA" /locus_tag="STM0380" /EC_number="6.3.2.4" /note="D-alanine--D-alanine ligase A. (SW:DDLA_SALTY)" /codon_start=1 /transl_table=11 /product="D-alanine--D-alanine ligase A" /protein_id="NP_459375.1" /db_xref="GI:16763760" /db_xref="GeneID:1251899" /translation="MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGID KAGQWHVNDAENYLQNADDPAHIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVI FPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFIT LTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDHKV VVEQGIKGREIECAVLGNDNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPS EVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPGFTNISMYPKLWQA SGLGYTDLISRLIELALERHTANNALKTTM" regulatory complement(434651..434656) /regulatory_class="ribosome_binding_site" /gene="ddlA" /locus_tag="STM0380" /note="putative RBS for ddlA; RegulonDB:STMS1H000734" gene 434712..435429 /locus_tag="STM0381" /db_xref="GeneID:1251900" regulatory 434712..434717 /regulatory_class="ribosome_binding_site" /locus_tag="STM0381" /note="putative RBS for STM0381; RegulonDB:STMS1H000735" CDS 434716..435429 /locus_tag="STM0381" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459376.1" /db_xref="GI:16763761" /db_xref="GeneID:1251900" /translation="MFMGCENGGRVRGKGFLIIVLLGGIGGLGYRYLPSYYNPFAPLQ LADPPGWITTFKLQRLTPSQCRELLTAANQQGLISSQPVADSAGECPLSHVVRVRDFG QVKLSSSFLASCPLALRSALFVEQQAKPLTETWMKRRLTRIEHLGSYACRNIYHRPDA RRSEHASAEALDVSGFQLSDGRKITVLRGWGRQETGPWLRAMLNASCHYYGNGLGPDY NAAHANHFHLGMRGYGVCR" gene 435598..436809 /locus_tag="STM0382" /db_xref="GeneID:1251901" CDS 435598..436809 /locus_tag="STM0382" /note="similar to E. coli putative transport protein (AAC74137.1); Blastp hit to AAC74137.1 (408 aa), 60% identity in aa 11 - 405" /codon_start=1 /transl_table=11 /product="multidrug transporter subunit MdtG" /protein_id="NP_459377.1" /db_xref="GI:16763762" /db_xref="GeneID:1251901" /translation="MESWKVNLISVWFGCFFTGLAISQILPFLPLYISQLGVSSHEAL SMWSGLTFSITFLISAIVSPMWGSLADRKGRKLMLLRASLGMAIAILLQAFATHVWQL FLLRGIMGLTSGYIPNAMALVASQVPRERSGWALSTLSTAQISGVIGGPLMGGFVADH IGLRAVFLITAMLLVVSFLVTLFLIKEGVRPVIKKSERLSGKAVFASLPYPALVISLF FTTMVIQLCNGSISPILALFIKSMMPDSNNIAFLSGLIASVPGISALISAPRLGKLGD RIGTERILMATLICAVLLFFAMSWVTTPFQLGLLRFLLGFADGAMLPAVQTLLVKYSS DQITGRIFGYNQSFMYLGNVVGPLMGATVSAMAGFRWVFIATAAIVLINIGQLTLALR RRRNAQKAKGQ" gene 437092..437366 /gene="yaiB" /locus_tag="STM0383" /db_xref="GeneID:1251902" regulatory 437092..437097 /regulatory_class="ribosome_binding_site" /gene="yaiB" /locus_tag="STM0383" /note="putative RBS for yaiB; RegulonDB:STMS1H000736" CDS 437100..437366 /gene="yaiB" /locus_tag="STM0383" /note="similar to E. coli orf, hypothetical protein (AAC73485.1); Blastp hit to AAC73485.1 (86 aa), 85% identity in aa 1 - 85" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459378.3" /db_xref="GI:1109557583" /db_xref="GeneID:1251902" /translation="MVMKNLIAELLLKLAQKEEESKELVAQVEALEIIVTAMLRNMAQ NEQEMLIRQVEGALEGVKPDASVPDHDTELLRQYVKKLLRHPRH" gene 437706..438038 /gene="psiF" /locus_tag="STM0384" /db_xref="GeneID:1251903" regulatory 437706..437711 /regulatory_class="ribosome_binding_site" /gene="psiF" /locus_tag="STM0384" /note="putative RBS for psiF; RegulonDB:STMS1H000737" CDS 437718..438038 /gene="psiF" /locus_tag="STM0384" /note="similar to E. coli induced by phosphate starvation (AAC73487.1); Blastp hit to AAC73487.1 (112 aa), 90% identity in aa 7 - 112" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459379.1" /db_xref="GI:16763764" /db_xref="GeneID:1251903" /translation="MKITLLVTLLFGLVFLTAVGATEKPLTPQQQRMTTCNQQATAQA LKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACL KKAA" gene 438111..439242 /gene="yaiC" /locus_tag="STM0385" /db_xref="GeneID:1251904" regulatory 438111..438116 /regulatory_class="ribosome_binding_site" /gene="yaiC" /locus_tag="STM0385" /note="putative RBS for yaiC; RegulonDB:STMS1H000738" CDS 438130..439242 /gene="yaiC" /locus_tag="STM0385" /note="similar to E. coli orf, hypothetical protein (AAC73488.1); Blastp hit to AAC73488.1 (371 aa), 75% identity in aa 1 - 371" /codon_start=1 /transl_table=11 /product="diguanylate cyclase AdrA" /protein_id="NP_459380.1" /db_xref="GI:16763765" /db_xref="GeneID:1251904" /translation="MFPKIMNDENFYRKAVEQAVAPPDPPDDRQRSGLRFARRIRLPR AVGLGGMFLPVAAVLVTQPVFGGWWLLLVGWSFVWPHLAWQWAAKALDPLRQEIYNLK VDAILSGMWIALMGVNMLPAAALFMMMSMNLMGAGGRRLFTVGMGLLLASCLVTLQLA GLPVAMRSSSLEVTLSLPVIMLYPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVY NRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQI TLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTLRLPGAPQVMLRISVGV APLTPQIGHYREWLKSADMALYKAKNAGRNRTEVAA" gene complement(439257..440080) /gene="proC" /locus_tag="STM0386" /db_xref="GeneID:1251905" CDS complement(439257..440066) /gene="proC" /locus_tag="STM0386" /EC_number="1.5.1.2" /note="similar to E. coli pyrroline-5-carboxylate reductase (AAC73489.1); Blastp hit to AAC73489.1 (269 aa), 95% identity in aa 1 - 269" /codon_start=1 /transl_table=11 /product="pyrroline-5-carboxylate reductase" /protein_id="NP_459381.1" /db_xref="GI:16763766" /db_xref="GeneID:1251905" /translation="MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAA LHDQYGINAAQSAQEVAQVADIVFGAVKPGIMVKVLSEISSSLNKDSLVVSIAAGVTL DQLARALGHDRKIIRAMPNTPSLVNAGMTSVTPNALVTPEDTADVLNIFRCFGGAEVI AEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLET GKHPGELKDMVCSPGGTTIEAVRVLEERGFRAAVIEAMTKCMEKSEALSKS" regulatory complement(440075..440080) /regulatory_class="ribosome_binding_site" /gene="proC" /locus_tag="STM0386" /note="putative RBS for proC; RegulonDB:STMS1H000739" gene 440194..440661 /gene="yaiI" /locus_tag="STM0387" /db_xref="GeneID:1251906" regulatory 440194..440199 /regulatory_class="ribosome_binding_site" /gene="yaiI" /locus_tag="STM0387" /note="putative RBS for yaiI; RegulonDB:STMS1H000740" CDS 440206..440661 /gene="yaiI" /locus_tag="STM0387" /note="similar to E. coli orf, hypothetical protein (AAC73490.1); Blastp hit to AAC73490.1 (192 aa), 89% identity in aa 41 - 191" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459382.1" /db_xref="GI:16763767" /db_xref="GeneID:1251906" /translation="MTIWVDADACPNVIKEILYRAAERMQLPLILVANQALRVPPSRF IRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEVLEKGAAALNPRGERYSDATI RERLTMRDFMDTLRASGVQTGGPNTLSPRDRQHFAAELDKWWLESQRKK" protein_bind 440591..440622 /gene="yaiI" /locus_tag="STM0387" /note="putative binding site for TyrR, RegulonDB: STMS1H000380" /bound_moiety="TyrR" protein_bind 440665..440687 /note="putative binding site for TyrR, RegulonDB: STMS1H000382" /bound_moiety="TyrR" gene 440687..441391 /gene="aroL" /locus_tag="STM0388" /db_xref="GeneID:1251907" regulatory 440687..440695 /regulatory_class="minus_35_signal" /gene="aroL" /locus_tag="STM0388" /note="putative -35_signal for aroL; RegulonDB:STMLTH004624" regulatory 440714..440722 /regulatory_class="minus_10_signal" /gene="aroL" /locus_tag="STM0388" /note="putative -10_signal for aroL; RegulonDB:STMLTH004624" protein_bind 440739..440761 /gene="aroL" /locus_tag="STM0388" /note="putative binding site for TyrR, RegulonDB: STMS1H000381" /bound_moiety="TyrR" protein_bind 440765..440793 /gene="aroL" /locus_tag="STM0388" /note="putative binding site for TrpR, RegulonDB: STMS1H000377" /bound_moiety="TrpR" regulatory 440829..440834 /regulatory_class="ribosome_binding_site" /gene="aroL" /locus_tag="STM0388" /note="putative RBS for aroL; RegulonDB:STMS1H000741" CDS 440846..441391 /gene="aroL" /locus_tag="STM0388" /EC_number="2.7.1.71" /note="similar to E. coli shikimate kinase II (AAC73491.1); Blastp hit to AAC73491.1 (174 aa), 74% identity in aa 1 - 168" /codon_start=1 /transl_table=11 /product="shikimate kinase II" /protein_id="NP_459383.1" /db_xref="GI:16763768" /db_xref="GeneID:1251907" /translation="MMQPLYLVGPRGCGKTTIGMALAQATGFRFADTDRWLQSHVQMS VADIVEKEGWGGFRARETAALEAVSAPSTVVATGGGIILTEYNRRYMHRVGVVIYLCA PVSTLVNRLEAEPEADLRPTLTGKPLSEEVREVLEQRDALYRETAHYIIDATKAPAQV VSEIIAALPPSTQRLQGDVYT" gene 441407..441609 /gene="yaiA" /locus_tag="STM0389" /db_xref="GeneID:1251908" regulatory 441407..441412 /regulatory_class="ribosome_binding_site" /gene="yaiA" /locus_tag="STM0389" /note="putative RBS for yaiA; RegulonDB:STMS1H000742" CDS 441418..441609 /gene="yaiA" /locus_tag="STM0389" /note="similar to E. coli orf, hypothetical protein (AAC73492.1); Blastp hit to AAC73492.1 (63 aa), 93% identity in aa 1 - 62" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459384.1" /db_xref="GI:16763769" /db_xref="GeneID:1251908" /translation="MPTRPPYPREAYIVTIEKGTPGQTVTWYQLRADHPKPDSLISEH PTAEEAMDAKNRYEDPDKS" gene 441846..442537 /gene="aroM" /locus_tag="STM0390" /db_xref="GeneID:1251909" regulatory 441846..441851 /regulatory_class="ribosome_binding_site" /gene="aroM" /locus_tag="STM0390" /note="putative RBS for aroM; RegulonDB:STMS1H000743" CDS 441860..442537 /gene="aroM" /locus_tag="STM0390" /note="similar to E. coli protein of aro operon, regulated by aroR (AAC73493.1); Blastp hit to AAC73493.1 (225 aa), 77% identity in aa 1 - 225" /codon_start=1 /transl_table=11 /product="AroM protein" /protein_id="NP_459385.1" /db_xref="GI:16763770" /db_xref="GeneID:1251909" /translation="MSASLAILTIGVVPMSEVLPLLTEYIDEQHITHHSLLGKMSRED VMADYAVEPGDDPLLTLLNDNQIAHVSRQKVERDLQSVVEVLDNQGYDVIILMSTAAI KSMAARNSILLEPLRIIPPLVASIVDGHQVGVIVPVAELLAAQEKKWQVLQMPPVYSL ANPVHGSEQQLIDAGQALLDQGADVIMLDCLGFHQRHRDILQQALDVPVLLSNVLIAR LASELLV" gene 442595..442892 /gene="yaiE" /locus_tag="STM0391" /db_xref="GeneID:1251910" regulatory 442595..442600 /regulatory_class="ribosome_binding_site" /gene="yaiE" /locus_tag="STM0391" /note="putative RBS for yaiE; RegulonDB:STMS1H000744" CDS 442608..442892 /gene="yaiE" /locus_tag="STM0391" /note="similar to E. coli orf, hypothetical protein (AAC73494.1); Blastp hit to AAC73494.1 (94 aa), 86% identity in aa 1 - 94" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459386.1" /db_xref="GI:16763771" /db_xref="GeneID:1251910" /translation="MLQSNEYFSGKVKSIGFTSSSTGRASVGVMAEGEYTFGTAEPEE MTVVSGALKVLLPGTVEWKVYTAGEVFNVPGHSEFHLQVAEPASYLCRYL" gene complement(442930..443853) /gene="rdgC" /locus_tag="STM0392" /db_xref="GeneID:1251911" CDS complement(442930..443841) /gene="rdgC" /locus_tag="STM0392" /note="similar to E. coli orf, hypothetical protein (AAC73496.1); Blastp hit to AAC73496.1 (303 aa), 93% identity in aa 1 - 303" /codon_start=1 /transl_table=11 /product="recombination-associated protein RdgC" /protein_id="NP_459387.1" /db_xref="GI:16763772" /db_xref="GeneID:1251911" /translation="MLWFKNLMVYRLSRDITLRAEEMEKQLASMTFTPCGSQDMAKMG WVPPMGSHSDALTHTANGQIIICARKEEKILPSPVIKQALEAKIQKLEADQGRKLKKT EKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGS LPVVPLALENPIELTLTEWVRSGTVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDE IAVHIEAGKVVTKLALDWQQRIQFVMCDDGSIKRLKFCDELRDQNEDIDREDFAQRFD ADFILMTGELAALIQSLVEGLGGEAQR" regulatory complement(443848..443853) /regulatory_class="ribosome_binding_site" /gene="rdgC" /locus_tag="STM0392" /note="putative RBS for rdgC; RegulonDB:STMS1H000745" gene 443955..444875 /gene="yajF" /locus_tag="STM0393" /db_xref="GeneID:1251912" regulatory 443955..443960 /regulatory_class="ribosome_binding_site" /gene="yajF" /locus_tag="STM0393" /note="putative RBS for yajF; RegulonDB:STMS1H000746" CDS 443967..444875 /gene="yajF" /locus_tag="STM0393" /note="similar to E. coli possible NAGC-like transcriptional regulator (AAC73497.1); Blastp hit to AAC73497.1 (348 aa), 88% identity in aa 47 - 346" /codon_start=1 /transl_table=11 /product="fructokinase" /protein_id="NP_459388.1" /db_xref="GI:16763773" /db_xref="GeneID:1251912" /translation="MRIGIDLGGTKTEVIALDDAGEQRFRHRLPTPREDYQQTIETIA TLVDMAEQATGQTGSVGIGIPGSLSPYTGVVKNANSTWLNGQPFDSDVSRRLKREVRL ANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVALNGRAHIGGNGTAGEWGHNPL PWMDDDELRYREEIPCYCGKQGCIETFISGTGFATDYQRLSGNALKGDEIIRLVDAQD AVAELALSRYELRLAKALSHVVNILDPDVIVLGGGMSNVERLYKTVPSLMKSFVFGGE CETPVRKARHGDSSGVRGAAWLWPLA" gene complement(444897..446125) /gene="araJ" /locus_tag="STM0394" /db_xref="GeneID:1251913" CDS complement(444897..446069) /gene="araJ" /locus_tag="STM0394" /note="similar to E. coli involved in either transport or processing of arabinose polymers (AAC73499.1); Blastp hit to AAC73499.1 (394 aa), 85% identity in aa 1 - 388" /codon_start=1 /transl_table=11 /product="MFS transporter AraJ" /protein_id="NP_459389.1" /db_xref="GI:16763774" /db_xref="GeneID:1251913" /translation="MKKVIFSLALGTFGLGMAEFGIMGVLTELARDVGITIPAAGHMI SFYAFGVVLGAPVMALFSSRFSLKHILLFLVMLCVMGNAIFTFSSSYLMLAVGRLVSG FPHGAFFGVGAIVLSKIIRPGKVTAAVAGMVSGMTVANLVGIPFGTYLSQEFSWRYTF LLIAVFNIAVLTAIFFWVPDIRDKAQGSLREQFHFLRSPSPWLIFAATMFGNAGVFAW FSYIKPFMMYISGFSETSMTFIMMLVGLGMVLGNLLSGKLSGRYTPLRIAVVTDLVIV LSLMALFFFSGYKTTSLTFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFN LGSAIGAWCGGLMLTLGFAYHYVALPAALLSFSAMSSLLVYGRLKHKQPSVTPVAG" protein_bind complement(446055..446075) /gene="araJ" /locus_tag="STM0394" /note="putative binding site for CRP, RegulonDB: STMS1H000039" /bound_moiety="CRP" regulatory complement(446072..446077) /regulatory_class="ribosome_binding_site" /gene="araJ" /locus_tag="STM0394" /note="putative RBS for araJ; RegulonDB:STMS1H000747" regulatory complement(446101..446109) /regulatory_class="minus_10_signal" /gene="araJ" /locus_tag="STM0394" /note="putative -10_signal for araJ; RegulonDB:STMLTH004632" regulatory complement(446117..446125) /regulatory_class="minus_35_signal" /gene="araJ" /locus_tag="STM0394" /note="putative -35_signal for araJ; RegulonDB:STMLTH004632" protein_bind complement(446204..446215) /note="putative binding site for CRP, RegulonDB: STMS1H000066" /bound_moiety="CRP" protein_bind complement(446222..446233) /note="putative binding site for AraC, RegulonDB: STMS1H000005" /bound_moiety="AraC" gene complement(446242..449396) /gene="sbcC" /locus_tag="STM0395" /db_xref="GeneID:1251914" CDS complement(446242..449382) /gene="sbcC" /locus_tag="STM0395" /note="similar to E. coli ATP-dependent dsDNA exonuclease (AAC73500.1); Blastp hit to AAC73500.1 (1048 aa), 70% identity in aa 1 - 1048" /codon_start=1 /transl_table=11 /product="exonuclease subunit SbcC" /protein_id="NP_459390.1" /db_xref="GI:16763775" /db_xref="GeneID:1251914" /translation="MKILSLRLKNLNSLKGEWKVDFTAEPFASNGLFAITGPTGAGKT TLLDAICLALYHETPRLNTVSQSQNDLMTRDTAECLAEVEFEVKGEAWRAFWSQNRAR NQPDGNLQAPRVELARCSDGKIFADKVKDKLEMIATLTGLDYGRFTRSMLLSQGQFAA FLNAKAKERAELLEELTGTEIYGQISAQVFEKHKSARLELEKLQAQASGVALLADEQL QQLEASLQALTDEEKRLLADQQGQQQHLHWLTRKNELHTELHARQQALYAAQEAREKA QPQLAALTLAQPARQLRPHWERIQEQTRAVERVRQHSDEVNARLQSAYRLRQRIRACA HRQFTQLNATGQRLKTWLAEHDGIRVWRSELAGWRALLTQQSHDRAQLSQWQQQLLSD TRQRDALPPLTLDLTPQALAEARALHTRQRPLRHRLAALQGQILPKQKRQAQLQAAIA RHHQEQAQYTQRLADKRLSYKTKAQELADVRTICEQEARIKDLESQRAHLQSGQPCPL CGSTTHPAIAAYQALELSANQTRRDALEKEVKTLAEEGAALRGQLDALTQQLQRDESE AQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAGWLTAAEEHEQQLDQLSQRHALQTQ IAAHTEQVARFTAQIAQRQASLTADLAQYTLSLPAPEDEASWLNERADEAKIWQQRQT EFADLQMQIDRLAPLLETLPQTDTADSDDDVPLDNWRQAHDECVSLQSQLQTLQEQTT QEQQRAAEAIAHFDAALKNSPFDSQATFLAALLDEETVTRLEKQQQTLESQLQQAKAL SAQSAQALADHQQQPPAGLDPTCTAEQLAQRLTQLAQQLRENTTRQGEIRQQIKQDAD NRQRQRALMTEMKQASQQVEDWGYLNALIGSKEGDKFRKFAQGLTLDNLVWLANHQLT RLHGRYLLQRKASDALELEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHK TRIDSLFLDEGFGTLDSETLDAALDALDALNASGKTIGVISHVEAMKERIPVQIKVKK INGLGYSKLDKAFAVE" gene complement(449379..450592) /gene="sbcD" /locus_tag="STM0396" /db_xref="GeneID:1251915" CDS complement(449379..450581) /gene="sbcD" /locus_tag="STM0396" /note="similar to E. coli ATP-dependent dsDNA exonuclease (AAC73501.1); Blastp hit to AAC73501.1 (400 aa), 84% identity in aa 1 - 400" /codon_start=1 /transl_table=11 /product="exonuclease subunit SbcD" /protein_id="NP_459391.1" /db_xref="GI:16763776" /db_xref="GeneID:1251915" /translation="MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLETAQAHQVDAII VAGDIFDTGSPPSYARELYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDILAFLNT TVIASAGYAPRLLHRRDGSPGAVLCPIPFLRPRDIITSQAGLSGSEKQQQLLHAIADY YQQQYQEACQLRGERKLPVIATGHLTTVGASKSDAVRDIYIGTLDAFPAQHFPPADYI ALGHIHRAQCVGGTEHIRYCGSPIALSFDECGKSKCVHLVTFEQGKWQSTESLAVPVT QPLAVLKGDLASITEQLEQWRGVEQSPPVWLDIEITTDDYLHDIQRRIQTLTESLPVE VLLVRRSREQRERSLANERRETLSELSVEEVFARRLALEALDPPQRERLNQLFSSTLY ALNEEHEA" regulatory complement(449391..449396) /regulatory_class="ribosome_binding_site" /gene="sbcD" /locus_tag="STM0396" /note="putative RBS for sbcC; RegulonDB:STMS1H000748" regulatory complement(450587..450592) /regulatory_class="ribosome_binding_site" /gene="sbcD" /locus_tag="STM0396" /note="putative RBS for sbcD; RegulonDB:STMS1H000749" gene 450723..451485 /gene="phoB" /locus_tag="STM0397" /db_xref="GeneID:1251916" regulatory 450723..450731 /regulatory_class="minus_35_signal" /gene="phoB" /locus_tag="STM0397" /note="putative -35_signal for phoB; RegulonDB:STMLTH004636" protein_bind 450725..450743 /gene="phoB" /locus_tag="STM0397" /note="putative binding site for PhoB, RegulonDB: STMS1H000342" /bound_moiety="PhoB" regulatory 450750..450758 /regulatory_class="minus_10_signal" /gene="phoB" /locus_tag="STM0397" /note="putative -10_signal for phoB; RegulonDB:STMLTH004636" regulatory 450785..450790 /regulatory_class="ribosome_binding_site" /gene="phoB" /locus_tag="STM0397" /note="putative RBS for phoB; RegulonDB:STMS1H000750" CDS 450796..451485 /gene="phoB" /locus_tag="STM0397" /note="regulates pho regulon (OmpR family); similar to E. coli positive response regulator for pho regulon, sensor is PhoR (or CreC) (AAC73502.1); Blastp hit to AAC73502.1 (229 aa), 95% identity in aa 1 - 229" /codon_start=1 /transl_table=11 /product="phosphate regulon transcriptional regulatory protein PhoB" /protein_id="NP_459392.1" /db_xref="GI:16763777" /db_xref="GeneID:1251916" /translation="MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNE PWPDLILLDWMLPGGSGLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDY ITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEF KLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEHSGHDRMVQTV RGTGYRFSTRF" gene 451540..452850 /gene="phoR" /locus_tag="STM0398" /db_xref="GeneID:1251917" regulatory 451540..451545 /regulatory_class="ribosome_binding_site" /gene="phoR" /locus_tag="STM0398" /note="putative RBS for phoR; RegulonDB:STMS1H000751" CDS 451555..452850 /gene="phoR" /locus_tag="STM0398" /EC_number="2.7.3.-" /note="similar to E. coli positive and negative sensor protein for pho regulon (AAC73503.1); Blastp hit to AAC73503.1 (431 aa), 90% identity in aa 1 - 431" /codon_start=1 /transl_table=11 /product="two-component system sensor histidine kinase PhoR" /protein_id="NP_459393.1" /db_xref="GI:16763778" /db_xref="GeneID:1251917" /translation="MLERLSWKRLVLELVLCCIPALILSAFFGYLPWFLLAAVTGLLV WHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRS GAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPDDNGQNILNLLRYPEFTQYLKTRD FTRPLHLVLNTGRHLEIRVMPYTDKQLLMVARDVTQMHQLEGARRNFFANVSHELRTP LTVLQGYLEMMQEQALEGATREKALHTMREQTYRMEGLVKQLLTLSKIEAAPALLLNE KVDVPMMLRVVEREAQTLSQQKHTFTFEVDDSLSVLGNEEQLRSAISNLVYNAVNHTP AGTHITVSWRRVAHGAEFCIQDNGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLA IVKHALNHHESRLEIDSSPGKGTRFSFVLPERLIAKNSD" gene 453243..454578 /gene="brnQ" /locus_tag="STM0399" /db_xref="GeneID:1251918" regulatory 453243..453248 /regulatory_class="ribosome_binding_site" /gene="brnQ" /locus_tag="STM0399" /note="putative RBS for brnQ; RegulonDB:STMS1H000752" CDS 453259..454578 /gene="brnQ" /locus_tag="STM0399" /note="branched-chain amino acid transport system II carrier protein(liv-II). (SW:BRNQ_SALTY)" /codon_start=1 /transl_table=11 /product="branched-chain amino acid transport system II carrier protein" /protein_id="NP_459394.1" /db_xref="GI:16763779" /db_xref="GeneID:1251918" /translation="MTHQLKSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTA AIGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGLLLATVCYLAVGPLFATPRT ATVSFEVGIAPLTGDSAMPLLIYSVVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALV ILSVAAIVWPAGPISNALDAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGV TEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSATLVDQSANGAAILHAYVQHTFG GAGSFLLAALIFIACLVTAVGLTCACAEFFAQYIPLSYRTLVFILGGFSMVVSNLGLS HLIQISIPVLTAIYPPCIALVVLSFTRSWWHNSTRIIAPAMFISLLFGILDGIKASAF GDMLPAWSQRLPLAEQGLAWLMPTVVMVILAIIWDRAAGRQVTSSAH" gene 454644..456023 /gene="proY" /locus_tag="STM0400" /db_xref="GeneID:1251919" regulatory 454644..454649 /regulatory_class="ribosome_binding_site" /gene="proY" /locus_tag="STM0400" /note="putative RBS for proY; RegulonDB:STMS1H000753" CDS 454653..456023 /gene="proY" /locus_tag="STM0400" /note="proline-specific permease PROY. (SW:PROY_SALTY)" /codon_start=1 /transl_table=11 /product="proline-specific permease ProY" /protein_id="NP_459395.1" /db_xref="GI:16763780" /db_xref="GeneID:1251919" /translation="MESNNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSV LLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIV AIADVTAFGIYMGVWFPAVPHWIWVLSVVLIICAINLMSVKVFGELEFWFSFFKVATI IIMIVAGIGIIVWGIGNGGQPTGIHNLWSNGGFFSNGWLGMIMSLQMVMFAYGGIEII GITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQH MGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKVFAKTSRRGIPWVT VLVMTIALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVK ALKFKVPGGVVTTIAGLIFLVFIIALIGYHPDTRISLYVGFAWIVLLLIGWIFKRRRD RQLAQA" gene 456172..458002 /gene="malZ" /locus_tag="STM0401" /db_xref="GeneID:1251920" regulatory 456172..456177 /regulatory_class="ribosome_binding_site" /gene="malZ" /locus_tag="STM0401" /note="putative RBS for malZ; RegulonDB:STMS1H000754" CDS 456185..458002 /gene="malZ" /locus_tag="STM0401" /EC_number="3.2.1.20" /note="similar to E. coli maltodextrin glucosidase (AAC73506.1); Blastp hit to AAC73506.1 (605 aa), 83% identity in aa 2 - 605" /codon_start=1 /transl_table=11 /product="maltodextrin glucosidase" /protein_id="NP_459396.1" /db_xref="GI:16763781" /db_xref="GeneID:1251920" /translation="MLNAWHLPVAPFVKQHNDKLTITLWLSGENPPSRVTLRSEFDNE EISLAMRKQRRQPQPGVTAWRATLNIALGQPRRRYSFKLLWHDRQLWFTPQGFSRFPP ARLEQFAVDVPDSGPQWVADQIFYQIFPDRFARSQSREAGQDRVYYHHAAGQEIVLRD WDDPLTPQAGGSTFYGGCLNGICEKLPYLKKLGVTALYLNPVFTAPSVHKYDTEDYRH VDPQFGGDRALLRLRRKTQVQGMRLVLDGVFNHSGDSHVWFDRHNRSTGGACHHPDSP WRDWYSFSPQGVALDWLGYPSLPKLDYQSETLVDEIYRGEDSIVRHWLKAPWNMDGWR LDVVHMLGEAGGARHNLQHVAGITRAAKEAQPEAYIVGEHFGDARQWLQADAEDAAMN YRGFTFPLWGFLANTDIAYEPQHIDARTCIAWMDNYRAGLSHQQQLRMFNQLDSHDTA RFKTLLGKDAARLPLAVVWLFTWPGVPCIYYGDEVGVDGANDPMCRKPFPWDERKQDG NLLALYQRMAKLRQSSLALRRGGCQALYAEGDVVVFVRVYQQQRALVAINRGEACEVA LEALPLLNVAGWQCKTGSGDIREGRLSLPAISATVWMNR" gene complement(458074..458684) /locus_tag="STM0402" /db_xref="GeneID:1251921" CDS complement(458074..458676) /locus_tag="STM0402" /EC_number="3.2.1.20" /note="similar to E. coli alkyl hydroperoxide reductase, C22 subunit; detoxification of hydroperoxides (AAC73706.1); Blastp hit to AAC73706.1 (187 aa), 36% identity in aa 1 - 186" /codon_start=1 /transl_table=11 /product="peroxiredoxin" /protein_id="NP_459397.1" /db_xref="GI:16763782" /db_xref="GeneID:1251921" /translation="MVLVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPM DFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAM VADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA LQFHEEHGDVCPAQWEKGKEGMNASPDGVAKYLAENISSL" regulatory complement(458679..458684) /regulatory_class="ribosome_binding_site" /locus_tag="STM0402" /note="putative RBS for STM0402; RegulonDB:STMS1H000755" gene complement(458886..459478) /gene="yajB" /locus_tag="STM0403" /db_xref="GeneID:1251922" CDS complement(458886..459467) /gene="yajB" /locus_tag="STM0403" /note="similar to E. coli putative glycoprotein (AAC73507.1); Blastp hit to AAC73507.1 (193 aa), 87% identity in aa 1 - 193" /codon_start=1 /transl_table=11 /product="ACP phosphodiesterase" /protein_id="NP_459398.1" /db_xref="GI:16763783" /db_xref="GeneID:1251922" /translation="MNFLAHLHLAHLADSSLSGNLLADFVRGNPATHYPPDVVEGIYM HRRIDVMTDNLPEVREAREWFRHETRRVAPITLDVMWDHFLSRHWTQISPDFPLQAFV GYAHAQVATILPDSPPRFVNLNDYLWSEKWLERYRDMDFIQNVLNGMANRRPRLDALR DSWYDLDAHYDALEERFWHFYPRMMAQAARKAL" regulatory complement(459473..459478) /regulatory_class="ribosome_binding_site" /gene="yajB" /locus_tag="STM0403" /note="putative RBS for yajB; RegulonDB:STMS1H000756" gene 459561..460625 /gene="queA" /locus_tag="STM0404" /db_xref="GeneID:1251923" CDS 459561..460625 /gene="queA" /locus_tag="STM0404" /EC_number="5.-.-.-" /note="similar to E. coli synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase (AAC73508.1); Blastp hit to AAC73508.1 (356 aa), 94% identity in aa 1 - 353" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine-tRNA ribosyltransferase-isomerase" /protein_id="NP_459399.1" /db_xref="GI:16763784" /db_xref="GeneID:1251923" /translation="MRVTDFSFELPESLIAHYPQPERSRCRLLSLEGPTGALTHGTFT DLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPK PGTELLLGDDESIHATMTARHGALFEVEFNDPRPVLDILNAIGHMPLPPYIDRPDEDA DRELYQTVYSEKPGAVAAPTAGLHFDEPLLAALREKGVEMAFVTLHVGAGTFQPVRVD TIEDHIMHSEYAEVPQEVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKSDLIEPF FGDTQIFIYPGYQYKVIDALITNFHLPESTLIMLVSAFAGYQHTMNAYKTAVEQKYRF FSYGDAMFITYNPQAISERP" gene 460811..461949 /gene="tgt" /locus_tag="STM0405" /db_xref="GeneID:1251924" regulatory 460811..460816 /regulatory_class="ribosome_binding_site" /gene="tgt" /locus_tag="STM0405" /note="putative RBS for tgt; RegulonDB:STMS1H000757" CDS 460822..461949 /gene="tgt" /locus_tag="STM0405" /EC_number="2.4.2.29" /note="similar to E. coli tRNA-guanine transglycosylase (AAC73509.1); Blastp hit to AAC73509.1 (375 aa), 97% identity in aa 1 - 375" /codon_start=1 /transl_table=11 /product="tRNA guanosine(34) transglycosylase Tgt" /protein_id="NP_459400.1" /db_xref="GI:16763785" /db_xref="GeneID:1251924" /translation="MKFELDTTDGRARRGRLVFDRGVVETPAFMPVGTYGTVKGMTPE EVEATGAQIILGNTFHLWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIR KITEQGVHFRNPINGDPIFLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSME MSLRWAKRSRDRFDSLGNKNALFGIIQGSVYEDLRDISVKGLVEIGFDGYAVGGLAVG EPKADMHRILEHVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGH LFVTDGVVKIRNAKHKSDTSPLDAECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHN LRYYQRLMAGLRKAIEEGKLESFVTEFYQRQGRPVPPLNVD" gene 461960..462304 /gene="yajC" /locus_tag="STM0406" /db_xref="GeneID:1251925" regulatory 461960..461965 /regulatory_class="ribosome_binding_site" /gene="yajC" /locus_tag="STM0406" /note="putative RBS for yajC; RegulonDB:STMS1H000758" CDS 461972..462304 /gene="yajC" /locus_tag="STM0406" /note="similar to E. coli orf, hypothetical protein (AAC73510.1); Blastp hit to AAC73510.1 (110 aa), 99% identity in aa 1 - 110" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit YajC" /protein_id="NP_459401.1" /db_xref="GI:16763786" /db_xref="GeneID:1251925" /translation="MSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQK RTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAEAGYIAIALNDTTEVVIKRDFVAAVL PKGTMKAL" gene 462320..464179 /gene="secD" /locus_tag="STM0407" /db_xref="GeneID:1251926" regulatory 462320..462325 /regulatory_class="ribosome_binding_site" /gene="secD" /locus_tag="STM0407" /note="putative RBS for secD; RegulonDB:STMS1H000759" CDS 462332..464179 /gene="secD" /locus_tag="STM0407" /note="similar to E. coli protein secretion; membrane protein, part of the channel (AAC73511.1); Blastp hit to AAC73511.1 (615 aa), 94% identity in aa 1 - 615" /codon_start=1 /transl_table=11 /product="protein-export membrane protein SecD" /protein_id="NP_459402.1" /db_xref="GI:16763787" /db_xref="GeneID:1251926" /translation="MLNRYPLWKYIMLVVVIIVGLLYALPNLYGEDPAVQITGVRGVA ASEQTLIQVQKTLQEEKIPAKSVALEEGAILARFDTTDTQLRAREALMSVLGDKYVVA LNLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDIDTALGKLQEQNIDSLRSDLRE KGIPYTTVRKENNYGLSITFRDSKARDEAIAYLTPRHRDLVISSQSGNQLRAVMTDAR LSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGAT ATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQD EYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEV INIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNI KQGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIA GIVLTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVII LYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI" gene 464178..465161 /gene="secF" /locus_tag="STM0408" /db_xref="GeneID:1251927" regulatory 464178..464183 /regulatory_class="ribosome_binding_site" /gene="secF" /locus_tag="STM0408" /note="putative RBS for secF; RegulonDB:STMS1H000760" CDS 464190..465161 /gene="secF" /locus_tag="STM0408" /note="similar to E. coli protein secretion, membrane protein (AAC73512.1); Blastp hit to AAC73512.1 (323 aa), 95% identity in aa 1 - 323" /codon_start=1 /transl_table=11 /product="protein-export membrane protein SecF" /protein_id="NP_459403.1" /db_xref="GI:16763788" /db_xref="GeneID:1251927" /translation="MAQEYTVEQLNHGRKVYDFMRWDFWAFGISGLLLIAAIVIMGVR GFNWGLDFTGGTVIEITLEKPAEMDVMREALQKAGYEEPQLQNFGSSHDIMVRMPPTE GETGGQVLGSKVVTIINEATNQNAAVKRIEFVGPSVGADLAQTGAMALLVALISILVY VGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVS DRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLVVILMLYLFGGPVLEGFSLT MLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPSILP" gene 465301..465674 /locus_tag="STM0409" /db_xref="GeneID:1251928" regulatory 465301..465306 /regulatory_class="ribosome_binding_site" /locus_tag="STM0409" /note="putative RBS for STM0409; RegulonDB:STMS1H000761" CDS 465309..465674 /locus_tag="STM0409" /codon_start=1 /transl_table=11 /product="glyoxalase" /protein_id="NP_459404.1" /db_xref="GI:16763789" /db_xref="GeneID:1251928" /translation="MKNLINWFEIPVTDMARAIAFYEQVMQISLRRETMDGADLAVFP YAEPGPGGALIKQDDVAPVAQGVVIYLHTADLLASIERVVLAGGKCVLEPMVPGDDIG TIALFIDSEGNRIGLHQPA" gene 465700..466392 /locus_tag="STM0410" /db_xref="GeneID:1251929" CDS 465700..466392 /locus_tag="STM0410" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator" /protein_id="NP_459405.1" /db_xref="GI:16763790" /db_xref="GeneID:1251929" /translation="MTRRADRLFQIVQILRGRRLTTAALLAQRLAVSERTIYRDIRDL SLSGVPVEGEAGSGYRLMAGFDLPPLMLTHRESEALMVAIRLLKTWGGDSLSRELESA QEKVLAILPEESRRKAEQTRIYAPDLGTSPHSRSAFDLIHQAVSAQQVLALHYRDEAG HLSSRDIQPLGLFFWGEHWLLVAWCERREDYRCFRLDRCLQITPLNRRFRETIDRSLR DFLRKVEHEKMP" gene 466546..466909 /gene="yajD" /locus_tag="STM0411" /db_xref="GeneID:1251930" regulatory 466546..466551 /regulatory_class="ribosome_binding_site" /gene="yajD" /locus_tag="STM0411" /note="putative RBS for yajD; RegulonDB:STMS1H000762" CDS 466562..466909 /gene="yajD" /locus_tag="STM0411" /note="hypothetical 12.6 Kda protein in secF-tsx intergenic region. (SW:YAJD_SALTY)" /codon_start=1 /transl_table=11 /product="HNH endonuclease" /protein_id="NP_459406.1" /db_xref="GI:16763791" /db_xref="GeneID:1251930" /translation="MAIIPKNYARLESGYREKALKLFPWVCGRCSREFVYSNLRELTV HHIDHDHTNNPEDGSNWELLCLYCHDHEHSKYTEADQYGSTVIAGEDAQKDVGEATYN PFADLKAMMNKKK" gene complement(467157..467483) /locus_tag="STM0412" /db_xref="GeneID:2673775" CDS complement(467157..467483) /locus_tag="STM0412" /note="hypothetical protein 14.5K (gi|1073681)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_446866.1" /db_xref="GI:1109557584" /db_xref="GeneID:2673775" /translation="MRRRVAPTSHYFRRCHQPKNRPVAIPTSVGAARSCQIVMLNSVS VILPPLLQWQRFAAILNLSGVKLAPVMLPVNTEQCAGVFSFQRQGHRGSSPRNIAPHR VAPAYR" gene complement(467538..468539) /gene="tsx" /locus_tag="STM0413" /db_xref="GeneID:1251932" CDS complement(467538..468401) /gene="tsx" /locus_tag="STM0413" /note="nucleoside-specific channel-forming protein TSX precursor. (SW:TSX_SALTY)" /codon_start=1 /transl_table=11 /product="nucleoside-specific channel-forming protein Tsx" /protein_id="NP_459408.1" /db_xref="GI:16763793" /db_xref="GeneID:1251932" /translation="MKKTLLAVSAALALTSSFTANAAENDQPQYLSDWWHQSVNVVGS YHTRFSPKLNNDVYLEYEAFAKKDWFDFYGYIDIPKTFDWGNGNDKGIWSDGSPLFME IEPRFSIDKLTGADLSFGPFKEWYFANNYIYDMGDNKASRQSTWYMGLGTDIDTGLPM GLSLNVYAKYQWQNYGASNENEWDGYRFKVKYFVPITDLWGGKLSYIGFTNFDWGSDL GDDPNRTSNSIASSHILALNYDHWHYSVVARYFHNGGQWQNGAKLNWGDGDFSAKSTG WGGYLVVGYNF" regulatory complement(468407..468412) /regulatory_class="ribosome_binding_site" /gene="tsx" /locus_tag="STM0413" /note="putative RBS for tsx; RegulonDB:STMS1H000763" protein_bind complement(468487..468507) /gene="tsx" /locus_tag="STM0413" /note="putative binding site for CRP, RegulonDB: STMS1H000100" /bound_moiety="CRP" protein_bind complement(468501..468543) /note="putative binding site for CytR, RegulonDB: STMS1H000129" /bound_moiety="CytR" regulatory complement(468515..468523) /regulatory_class="minus_10_signal" /gene="tsx" /locus_tag="STM0413" /note="putative -10_signal for tsx; RegulonDB:STMLTH004651" regulatory complement(468531..468539) /regulatory_class="minus_35_signal" /gene="tsx" /locus_tag="STM0413" /note="putative -35_signal for tsx; RegulonDB:STMLTH004651" protein_bind complement(468541..468561) /note="putative binding site for CRP, RegulonDB: STMS1H000103" /bound_moiety="CRP" protein_bind complement(468553..468571) /note="putative binding site for DeoR, RegulonDB: STMS1H000131" /bound_moiety="DeoR" protein_bind complement(468659..468701) /note="putative binding site for CytR, RegulonDB: STMS1H000128" /bound_moiety="CytR" gene complement(468701..469255) /gene="yajI" /locus_tag="STM0414" /db_xref="GeneID:1251933" CDS complement(468701..469240) /gene="yajI" /locus_tag="STM0414" /note="similar to E. coli orf, hypothetical protein (AAC73515.1); Blastp hit to AAC73515.1 (199 aa), 73% identity in aa 21 - 199" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459409.1" /db_xref="GI:16763794" /db_xref="GeneID:1251933" /translation="MTRRYLRILLVGSLLSLTACAPQSEVRQMHQSISTLNKEMTQLN QETVKITQQNKLNAESTRGVYLLPGANTPARLESQIGTLRMTLLEITPVADGAHATLH IQGESRDPLPAFSATVEYGQLQGTTENYQEVNAQSLLVNAPASLLAPSDVNISLPLKG ITPAQLGFIRIHDIQPVNQ" regulatory complement(469250..469255) /regulatory_class="ribosome_binding_site" /gene="yajI" /locus_tag="STM0414" /note="putative RBS for yajI; RegulonDB:STMS1H000764" gene 469381..469841 /gene="ybaD" /locus_tag="STM0415" /db_xref="GeneID:1251934" regulatory 469381..469386 /regulatory_class="ribosome_binding_site" /gene="ybaD" /locus_tag="STM0415" /note="putative RBS for ybaD; RegulonDB:STMS1H000765" CDS 469392..469841 /gene="ybaD" /locus_tag="STM0415" /note="similar to E. coli orf, hypothetical protein (AAC73516.1); Blastp hit to AAC73516.1 (149 aa), 95% identity in aa 1 - 149" /codon_start=1 /transl_table=11 /product="transcriptional regulator NrdR" /protein_id="NP_459410.1" /db_xref="GI:16763795" /db_xref="GeneID:1251934" /translation="MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVA ELVMPRVIKSNDVREPFNEDKLRSGMLRALEKRPVSADDVEMALNHIKSQLRATGERE VPSKMIGNLVMEQLKKLDKVAYIRFASVYRSFEDIKDFGEEIARLQD" gene 469833..470948 /gene="ribD" /locus_tag="STM0416" /db_xref="GeneID:1251935" regulatory 469833..469838 /regulatory_class="ribosome_binding_site" /gene="ybaD" /locus_tag="STM0415" /note="putative RBS for ribD; RegulonDB:STMS1H000766" CDS 469845..470948 /gene="ribD" /locus_tag="STM0416" /EC_number="1.1.1.193" /EC_number="3.5.4.26" /note="bifunctional; similar to E. coli bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis (AAC73517.1); Blastp hit to AAC73517.1 (367 aa), 89% identity in aa 1 - 367" /codon_start=1 /transl_table=11 /product="riboflavin biosynthesis protein RibD" /protein_id="NP_459411.1" /db_xref="GI:16763796" /db_xref="GeneID:1251935" /translation="MQDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHH RAGEPHAEVHALRMAGAKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQD PNPQVAGRGLYRLQQAGIAVSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGR TAMASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWAELDASTQAS YPQENLRQPVRIVIDSQNRVTPAHRIVQQPGETWIARTQEDSRAWPDAVRTISVPAHN GHLDLVVLMMQLGRQQINSIWVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLC ELPGLEKLADAPQFTFSEIRHVGPDVCLHMVSA" gene 471023..471507 /gene="ribH" /locus_tag="STM0417" /db_xref="GeneID:1251936" regulatory 471023..471028 /regulatory_class="ribosome_binding_site" /gene="ribH" /locus_tag="STM0417" /note="putative RBS for ribH; RegulonDB:STMS1H000767" CDS 471037..471507 /gene="ribH" /locus_tag="STM0417" /EC_number="2.5.1.9" /note="similar to E. coli riboflavin synthase, beta chain (AAC73518.1); Blastp hit to AAC73518.1 (156 aa), 91% identity in aa 1 - 156" /codon_start=1 /transl_table=11 /product="6,7-dimethyl-8-ribityllumazine synthase" /protein_id="NP_459412.1" /db_xref="GI:16763797" /db_xref="GeneID:1251936" /translation="MNIIKANVAAPDARVAITIARFNQFINDSLLDGAVDALTRIGQV KDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNGLA SVAQDSGVPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA" gene 471516..471947 /gene="nusB" /locus_tag="STM0418" /db_xref="GeneID:1251937" regulatory 471516..471521 /regulatory_class="ribosome_binding_site" /gene="nusB" /locus_tag="STM0418" /note="putative RBS for nusB; RegulonDB:STMS1H000768" CDS 471528..471947 /gene="nusB" /locus_tag="STM0418" /note="similar to E. coli transcription termination; L factor (AAC73519.1); Blastp hit to AAC73519.1 (139 aa), 96% identity in aa 1 - 139" /codon_start=1 /transl_table=11 /product="N utilization substance protein B" /protein_id="NP_459413.1" /db_xref="GI:16763798" /db_xref="GeneID:1251937" /translation="MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD VLYFRELLSGVATNSAYLDGLMKPYLSRLLEELGQVEKAVLRIALFELSKRSDVPYKV AINEAIELAKTFGAEDSHKFVNGVLDKAAPVIRPNKK" gene 472014..473003 /gene="thiL" /locus_tag="STM0419" /db_xref="GeneID:1251938" regulatory 472014..472019 /regulatory_class="ribosome_binding_site" /gene="thiL" /locus_tag="STM0419" /note="putative RBS for thiL; RegulonDB:STMS1H000769" CDS 472026..473003 /gene="thiL" /locus_tag="STM0419" /EC_number="2.7.4.16" /note="thiamine-monophosphate kinase. (SW:THIL_SALTY)" /codon_start=1 /transl_table=11 /product="thiamine-phosphate kinase" /protein_id="NP_459414.1" /db_xref="GI:16763799" /db_xref="GeneID:1251938" /translation="MACGEFSLIARYFDRVRSSRLDVETGIGDDCALLNIPEKQTLAI STDTLVAGNHFLPDIDPADLAYKALAVNLSDLAAMGADPAWLTLALTLPEVDEPWLEA FSDSLFALLNYYDMQLIGGDTTRGPLSMTLGIHGYIPAGRALKRSGAKPGDWIYVTGT PGDSAAGLAVLQNRLQVSEETDAHYLIQRHLRPTPRILHGQALRDIASAAIDLSDGLI SDLGHIVKASGCGARVDVDALPKSDAMMRHVDDGQALRWALSGGEDYELCFTVPELNR GALDVAIGQLGVPFTCIGQMSADIEGLNFVRDGMPVTFDWKGYDHFATP" gene 472970..473496 /gene="pgpA" /locus_tag="STM0420" /db_xref="GeneID:1251939" regulatory 472970..472975 /regulatory_class="ribosome_binding_site" /gene="pgpA" /locus_tag="STM0420" /note="putative RBS for pgpA; RegulonDB:STMS1H000770" CDS 472981..473496 /gene="pgpA" /locus_tag="STM0420" /EC_number="3.1.3.27" /note="similar to E. coli phosphatidylglycerophosphatase (AAC73521.1); Blastp hit to AAC73521.1 (172 aa), 95% identity in aa 1 - 171" /codon_start=1 /transl_table=11 /product="phosphatidylglycerophosphatase A" /protein_id="NP_459415.1" /db_xref="GI:16763800" /db_xref="GeneID:1251939" /translation="MTILPRHKDVAKSRLNLRNPWHLLATGFGSGLSPVVPGTMGSLA AIPFWYLMTFLPWQLYSLVVMFGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITL MALPTTDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILY FIGHHWPLGII" gene complement(473600..474587) /gene="yajO" /locus_tag="STM0421" /db_xref="GeneID:1251940" CDS complement(473600..474574) /gene="yajO" /locus_tag="STM0421" /note="similar to E. coli putative NAD(P)H-dependent xylose reductase (AAC73522.1); Blastp hit to AAC73522.1 (348 aa), 92% identity in aa 25 - 348" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_459416.1" /db_xref="GI:16763801" /db_xref="GeneID:1251940" /translation="MQYNTLGNTDLRVSRLCLGCMTFGEPSRGNHAWTLPEESSRPII KRALEGGINFFDTANSYSDGSSEEIVGRALRDFARRDEVVVATKVFHRVGDLPEGLSR AQILRSIDDSLARLGMEYVDILQIHRWDYTTPIEETLEALNDVVKAGKARYIGASSMH ASQFAQALALQKQHGWAPFVTMQDHYNLIYREEEREMLPLCWQEGVAVIPWSPLARGR LTRPWGETTARLVSDDVGKNLYDESDKNDAQIAERLAGVSEALGATRAQVALGWLLSK RGVAAPIIGASREEQLDELLNAVDLTLKPEQIAELETPYKQHPVVGFK" regulatory complement(474582..474587) /regulatory_class="ribosome_binding_site" /gene="yajO" /locus_tag="STM0421" /note="putative RBS for yajO; RegulonDB:STMS1H000771" gene complement(474631..476493) /gene="dxs" /locus_tag="STM0422" /db_xref="GeneID:1251941" CDS complement(474631..476493) /gene="dxs" /locus_tag="STM0422" /EC_number="2.2.-.-" /note="similar to E. coli 1-deoxyxylulose-5-phosphate synthase; flavoprotein (AAC73523.1); Blastp hit to AAC73523.1 (620 aa), 96% identity in aa 1 - 620" /codon_start=1 /transl_table=11 /product="1-deoxy-D-xylulose-5-phosphate synthase" /protein_id="NP_459417.1" /db_xref="GI:16763802" /db_xref="GeneID:1251941" /translation="MSFDIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVS RSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKG GLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKDRRTVCVIGDGAITAGMA FEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSG VPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVMGLISTLKNMRDLKGPQ FLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPGYSKIFGDWLCETAA KDSKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPVVAIY STFLQRAYDQVIHDVAIQKLPVMFAIDRAGIVGADGQTHQGAFDLSYLRCIPDMVIMT PSDENECRQMLFTGYHYNDGPTAVRYPRGNAQGVALTPLEKLPIGKGLVKRHGEKLAI LNFGTLMPEAAKVAEALNATLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAG SGVNEVLMAHRKPVPVLNIGLPDFFIPQGTQEEARAELGLDAAGIEAKIKAWLA" gene complement(476517..477431) /gene="ispA" /locus_tag="STM0423" /db_xref="GeneID:1251942" CDS complement(476517..477416) /gene="ispA" /locus_tag="STM0423" /EC_number="2.5.1.10" /note="similar to E. coli geranyltranstransferase (farnesyldiphosphate synthase) (AAC73524.1); Blastp hit to AAC73524.1 (299 aa), 90% identity in aa 1 - 299" /codon_start=1 /transl_table=11 /product="(2E,6E)-farnesyl diphosphate synthase" /protein_id="NP_459418.1" /db_xref="GI:16763803" /db_xref="GeneID:1251942" /translation="MDFTQQLQACVTQANQALSRFIAPLPFQNTPVVEAMQYGALLGG KRLRPFLVYATGQMFGVSTATLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCH IKFGEANAILAGDALQTLAFAIISDAPMPEVADRDRIAMIAELANASGIAGMCGGQAL DLAAEGQRITLDALERIHRHKTGALIRAAVRLGALSAGDKGRNTLPILDRYAESIGLA FQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARNKARDLIEDARQSLHQ LAAQSLDTSALEALANYIIQRDK" gene complement(477417..477679) /gene="xseB" /locus_tag="STM0424" /db_xref="GeneID:1251943" CDS complement(477417..477659) /gene="xseB" /locus_tag="STM0424" /EC_number="3.1.11.6" /note="similar to E. coli exonuclease VII, small subunit (AAC73525.1); Blastp hit to AAC73525.1 (80 aa), 90% identity in aa 1 - 80" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease VII small subunit" /protein_id="NP_459419.1" /db_xref="GI:16763804" /db_xref="GeneID:1251943" /translation="MPKKNEAPASFETALSELEHIVTRLESGDLPLEDALNEFERGVQ LARQGQAKLQQAEQRVQILLSDNEEASPEPFIADNE" regulatory complement(477426..477431) /regulatory_class="ribosome_binding_site" /gene="xseB" /locus_tag="STM0424" /note="putative RBS for ispA; RegulonDB:STMS1H000772" regulatory complement(477674..477679) /regulatory_class="ribosome_binding_site" /gene="xseB" /locus_tag="STM0424" /note="putative RBS for xseB; RegulonDB:STMS1H000773" gene 477869..479317 /gene="thiI" /locus_tag="STM0425" /db_xref="GeneID:1251944" CDS 477869..479317 /gene="thiI" /locus_tag="STM0425" /note="thiamine biosynthesis protein thiI. (SW:THII_SALTY)" /codon_start=1 /transl_table=11 /product="tRNA 4-thiouridine(8) synthase ThiI" /protein_id="NP_459420.1" /db_xref="GI:16763805" /db_xref="GeneID:1251944" /translation="MKFIIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVV RHWDNIEVRAKDENQRLVIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALAQYREQL EGKTFCVRVKRRGKHEFSSIEVERYVGGGLNQHIESARVKLTNPDVTVHLEVEDDRLL LIKGRYEGIGGFPIGTQEDVLSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEI GVRQVAHYLWNRFGSSHRVRFVAINFEPVVGEILEKVDDGQMGVVLKRMMVRAASKVA ERYGVQALVTGEALGQVSSQTLTNLRLIDNVSDTLILRPLISYDKEHIINLARQIGTE DFARTMPEYCGVISKSPTVKAIKAKIEAEEENFDFSILDKVVEEANNVDIREIAQQTQ QEVVEVETVSGFGPNDVILDIRSVDEQDDKPLKVEGVDVVSLPFYKLSTKFGDLDQSK TWLLWCERGVMSRLQALYLREQGFANVKVYRP" gene complement(479361..480165) /gene="phnV" /locus_tag="STM0426" /db_xref="GeneID:1251945" CDS complement(479361..480158) /gene="phnV" /locus_tag="STM0426" /note="probable membrane component of 2-aminoethylphosphonate transporter phnV (gi|11354255)" /codon_start=1 /transl_table=11 /product="2-aminoethylphosphonate ABC transport system, membrane component PhnV" /protein_id="NP_459421.1" /db_xref="GI:16763806" /db_xref="GeneID:1251945" /translation="MLIWSPKGRAAAGVVASVLFIVFFFLPLAVILMSSLSQQWNGIL PSGFTLNHFVNALHGAAWDALLASLTIGFCASLFALLCGVWAALALRQYGVKTQKWLS MVFYLPSAIPSVSVGLGILVAFSQGPLQMNGTLWIVLTAHFVLISAFTFSNVSTGLAR ISADIENVASSLGASPWYRLRHVTLPLLMPWMMSALALSLSLSMGELGATMMIYPPGW TTLPVAIFSLTDRGNIADGAALTIVLVAITLLLMMKLERIAKRLGQK" regulatory complement(480160..480165) /regulatory_class="ribosome_binding_site" /gene="phnV" /locus_tag="STM0426" /note="putative RBS for phnV; RegulonDB:STMS1H000774" gene complement(480161..481027) /gene="phnU" /locus_tag="STM0427" /db_xref="GeneID:1251946" CDS complement(480161..481021) /gene="phnU" /locus_tag="STM0427" /note="probable membrane component of 2-aminoethylphosphonate transporter phnU (gi|11354254)" /codon_start=1 /transl_table=11 /product="2-aminoethylphosphonate ABC transporter permease subunit" /protein_id="NP_459422.1" /db_xref="GI:16763807" /db_xref="GeneID:1251946" /translation="MSLILPLEKPALNLRPLLWLLLPLLVLATLFFWPLSLIVEQALR GANGEIGLETFRQVVDSKRFVGALLNTLQIAFFATAGCLLLGSVMSLILVFIPFPGSE LIGRVVDTFIALPTFLITLAFTFIYGSAGLLNGTLMSLFAFELPPVDFLYSMQGVILA EITVFTPLVMRPLMAALRQIDKSQLEAASILGAHPLRVIGQVIFPAALPALMAGGSLC LLLTTNEFGIVLFIGAKGVNTLPMMVYSKAILESDYTVACMIALINIVLSLGLFSLYR LAASRTGVRS" regulatory complement(481022..481027) /regulatory_class="ribosome_binding_site" /gene="phnU" /locus_tag="STM0427" /note="putative RBS for phnU; RegulonDB:STMS1H000775" gene complement(481024..482133) /gene="phnT" /locus_tag="STM0428" /db_xref="GeneID:1251947" CDS complement(481024..482133) /gene="phnT" /locus_tag="STM0428" /note="probable ATPase component of 2-aminoethylphosphonate transporter phnT (gi|11354253)" /codon_start=1 /transl_table=11 /product="2-aminoethylphosphonate ABC transport system ATP-binding subunit PhnT" /protein_id="NP_459423.1" /db_xref="GI:16763808" /db_xref="GeneID:1251947" /translation="MLMKTTTVHAPASQGTSGIVLDSLRVAYHGNVVLKPLSLTIEPG EVLALIGPSGSGKTTVLRAVAGFVQPAGGRILIGDTDVTHLPPYKRGLAMVVQNYALF PHLKVEDNVAFGLRAQKQPKALINERVTQALKTVGMSDYAARYPHQLSGGQQQRVAIA RAIAVRPRVLLLDEPLSALDAQIRHNMVEEIARLHRELPELTILYVTHDQTEALTLAD KIGIMKDGSLIAHGETRALYQHPPNRFAAEFLGRANILSAIALGITEAPGLVDVSCGG AVIRAFSRGSHHGYNKLLCIRPQHLSLTPRSAYSNRFNATLQSVHWQGDLTHLLCDVA GETVRMVLTHVNPLPRVGDKLALWFEPDDAVLIEV" gene complement(482139..483157) /gene="phnS" /locus_tag="STM0429" /db_xref="GeneID:1251948" CDS complement(482139..483152) /gene="phnS" /locus_tag="STM0429" /note="probable periplasmic binding-protein of the 2-aminoethylphosphonate transporter PhnS (gi|11354256)" /codon_start=1 /transl_table=11 /product="2-aminoethylphosphonate ABC transporter substrate-binding protein" /protein_id="NP_459424.1" /db_xref="GI:16763809" /db_xref="GeneID:1251948" /translation="MKLSRLALLSVFALASAPSWAESVVTVYSIDGLHDGDNSWYQVQ FDAFTKATGITVRYVEGGGGVVVERLAKERTNPQADVLVTAPPFIQRAAAEKLLANFN TDTASAIPDANNLYSPLVKNYLSFIYNSKLLKTAPASWQDLLDGKFKNKLQYSTPGQA ADGTAVMLQAFHSFGSKDAGFAYLGKLQANNVGPSASTGKLTALVNKGEIYVANGDLQ MNLAQMERNPNVKIFWPANDKGERSALAIPYVIGLVQGAPQSENGKKLINFLLSKEAQ TRVSELSWGMPVRSDVTPSDEHYKAATAALEGVQSWQPNWDDVAVSLSADISRWHKVT ESE" regulatory complement(483152..483157) /regulatory_class="ribosome_binding_site" /gene="phnS" /locus_tag="STM0429" /note="putative RBS for phnS; RegulonDB:STMS1H000776" gene complement(483350..484085) /gene="phnR" /locus_tag="STM0430" /db_xref="GeneID:1251949" CDS complement(483350..484069) /gene="phnR" /locus_tag="STM0430" /note="probable repressor protein of GntR family phnR (gi|11354257)" /codon_start=1 /transl_table=11 /product="phosphonate utilization transcriptional regulator PhnR" /protein_id="NP_459425.1" /db_xref="GI:16763810" /db_xref="GeneID:1251949" /translation="MKSIPGDIPQYLLIKAQLQARIQSGALKSGDKLPSERELCAIFN TTRITIRESLAQLESSGLIWRADRRGWFVTPERLWLDPTQNTNFHKLCREQGREPKTA LLSGVLTTVPVEVMEPLQLQPFDQIYLLTRLRYADGRAVCYCENHCLPARVPELLQYD LNGSLTEVYESHYNLVYTSMHLSFYPTAMPAQAAQALGVMEGRPALLLRRLNYDQHGR VLDLDIEYWRHDSLRIEVDTH" regulatory complement(484080..484085) /regulatory_class="ribosome_binding_site" /gene="phnR" /locus_tag="STM0430" /note="putative RBS for phnR; RegulonDB:STMS1H000777" gene 484203..485312 /gene="phnW" /locus_tag="STM0431" /db_xref="GeneID:1251950" regulatory 484203..484208 /regulatory_class="ribosome_binding_site" /gene="phnW" /locus_tag="STM0431" /note="putative RBS for phnW; RegulonDB:STMS1H000778" CDS 484209..485312 /gene="phnW" /locus_tag="STM0431" /EC_number="2.6.1.-" /note="2-aminoethylphosphonate--pyruvate aminotransferase phnW (gi|11354251)" /codon_start=1 /transl_table=11 /product="2-aminoethylphosphonate--pyruvate transaminase" /protein_id="NP_459426.1" /db_xref="GI:16763811" /db_xref="GeneID:1251950" /translation="MTSRNYLLLTPGPLTTSRTVKEAMLFDSCTWDDDYNIGVVEQIR QQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGL MGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHR YGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGH SRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQ RSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVS QSDCFRIGNIGEVYAADITALLTAIRTAMYWTK" gene 485312..486131 /gene="phnX" /locus_tag="STM0432" /db_xref="GeneID:1251951" regulatory 485312..485317 /regulatory_class="ribosome_binding_site" /gene="phnX" /locus_tag="STM0432" /note="putative RBS for phnX; RegulonDB:STMS1H000779" CDS 485319..486131 /gene="phnX" /locus_tag="STM0432" /EC_number="3.1.3.18" /note="phosphonoacetaldehyde phosphonohydrolase phnX (gi|11354252)" /codon_start=1 /transl_table=11 /product="2-aminoethylphosphonate transport" /protein_id="NP_459427.1" /db_xref="GI:16763812" /db_xref="GeneID:1251951" /translation="MMNRIHAVILDWAGTTVDFGSFAPTQIFVEAFRQAFDVEITLAE ARVPMGLGKWQHIEALGKLPAVDARWQAKFGRSMSAADIDAIYAAFMPLQIAKVVDFS SPIAGVIDTIAALRAEGIKIGSCSGYPRAVMERLVPAAAGHGYRPDHWVATDDLAAGG RPGPWMALQNVIALGIDAVAHCVKVDDAAPGISEGLNAGMWTVGLAVSGNEFGATWDA YQTMSKEDVAVRREHAASKLYAAGAHYVVDSLADLPGVIAHINARLAQGERP" gene complement(486228..486831) /gene="thiJ" /locus_tag="STM0433" /db_xref="GeneID:1251952" CDS complement(486228..486818) /gene="thiJ" /locus_tag="STM0433" /note="4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme. (SW:THIJ_SALTY)" /codon_start=1 /transl_table=11 /product="DJ-1 family protein" /protein_id="NP_459428.1" /db_xref="GI:16763813" /db_xref="GeneID:1251952" /translation="MSAQALVCLAPGSEETEAVTTIDLLVRGGIHVTTASVASDGNLT IVCSRGVKLLADAPLVEVADGDYDIIVLPGGIKGAECFRDSPLLVETVKQFHRSGRIV AAICAAAATVLVPHDIFPIGNMTGFPALKDKIPAEQWLDKRVVWDARVKLLTSQGPGT AIDFGLKIIDLLAGREKAHEVASQLVMAAGIYNYYE" gene complement(486781..487703) /gene="apbA" /locus_tag="STM0434" /db_xref="GeneID:1251953" CDS complement(486781..487692) /gene="apbA" /locus_tag="STM0434" /EC_number="1.1.1.169" /note="2-dehydropantoate 2-reductase. (SW:APBA_SALTY)" /codon_start=1 /transl_table=11 /product="2-dehydropantoate 2-reductase" /protein_id="NP_459429.1" /db_xref="GI:16763814" /db_xref="GeneID:1251953" /translation="MKITVLGCGALGQLWLSALCKHGHDVQGWLRVPQPYCSVNLIDT DGSFFNESLTANDPDFLAKSELLLVTLKAWQVSDAVRTLASTLPVTSPILLIHNGMGT IEELQNIQQPMLMGTITHAARRDGNIIIHVANGTTHIGPAREQDGDYSYLADILQGVL PDVAWHNNIRAEMWRKLAVNCVINPLTALWNCPNGELRHHTDEINAICEEVAAVIERE GYHTSADDLRYYVEQVIDSTAENISSMLQDVRAMRHTEIDYITGYLLKRARVHGLAVP ENSRLFEMVKRKESEYERSGTGMPRPW" regulatory complement(486826..486831) /regulatory_class="ribosome_binding_site" /gene="thiJ" /locus_tag="STM0433" /note="putative RBS for thiJ; RegulonDB:STMS1H000780" regulatory complement(487698..487703) /regulatory_class="ribosome_binding_site" /gene="apbA" /locus_tag="STM0434" /note="putative RBS for apbA; RegulonDB:STMS1H000781" gene 487800..488309 /gene="yajQ" /locus_tag="STM0435" /db_xref="GeneID:1251954" CDS 487800..488309 /gene="yajQ" /locus_tag="STM0435" /note="similar to E. coli orf, hypothetical protein (AAC73529.1); Blastp hit to AAC73529.1 (169 aa), 90% identity in aa 1 - 169" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459430.3" /db_xref="GI:1109557585" /db_xref="GeneID:1251954" /translation="MKGEEKMPSFDIVSEVDLQEARNGVDNAVREVESRFDFRGVEAT IELNDANKTIKVLSESDFQVNQLLDILRAKLLKRGIEGASLDVPDEFVHSGKTWYVEA KLKQGIESAVQKKIVKLIKDSKLKVQAQIQGEEIRVTGKSRDDLQSVMALVRGGDLGQ PFQFKNFRD" gene complement(488356..489705) /gene="yajR" /locus_tag="STM0436" /db_xref="GeneID:1251955" CDS complement(488356..489705) /gene="yajR" /locus_tag="STM0436" /note="similar to E. coli putative transport protein (AAC73530.1); Blastp hit to AAC73530.1 (456 aa), 89% identity in aa 8 - 453" /codon_start=1 /transl_table=11 /product="putative MFS family transporter" /protein_id="NP_459431.3" /db_xref="GI:1109557586" /db_xref="GeneID:1251955" /translation="MTPGELRATWGLGTVFSLRMLGMFMVLPVLTTYGMALQGASEAL IGIAIGIYGLAQAIFQIPFGLLSDRIGRKPLIVGGLAVFVAGSVIAALSHSIWGIILG RALQGSGAIAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIVTHSLGLN ALFWMIAALATLGILLTIWVVPNSTNHVLNRESGMVKGSFSKVLAEPRLLKLNFGIMC LHILLMSTFVALPGQLADAGFPAAEHWKVYLATMVIAFAAVVPFIIYAEVKRRMKQVF LFCVGLIVVAEIVLWGAGQHFWELVIGVQLFFLAFNLMEALLPSLISKESPAGYKGTA MGVYSTSQFLGVALGGSLGGWIDGTFDGQTVFLAGAVLAMVWLAVASTMKEPPYVSSL RVEIPADIVADDRLKQRLLAMKGVSEALIVAEEHSAYVKIDSKVTNRFEVEQLISKG" gene complement(489948..490109) /locus_tag="STM0436A" /db_xref="GeneID:1251956" CDS complement(489948..490109) /locus_tag="STM0436A" /codon_start=1 /transl_table=11 /product="IS903 transposase" /protein_id="NP_446891.1" /db_xref="GI:1109557587" /db_xref="GeneID:1251956" /translation="MPSFQNRVPMAKQKFKITHRPATLRQRGSLTVWLDEFCYCNMEQ QRTQPEGRG" gene 490250..491768 /locus_tag="STM0437" /db_xref="GeneID:1251957" regulatory 490250..490255 /regulatory_class="ribosome_binding_site" /locus_tag="STM0437" /note="putative RBS for STM0437; RegulonDB:STMS1H000782" CDS 490257..491768 /locus_tag="STM0437" /note="similar to E. coli orf, hypothetical protein (AAC73748.1); Blastp hit to AAC73748.1 (184 aa), 38% identity in aa 61 - 150, 32% identity in aa 22 - 151, 36% identity in aa 57 - 131, 38% identity in aa 123 - 175, 30-1073758628dentity in aa 105 - 164, 22% identity in aa 10 - 129" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459433.1" /db_xref="GI:16763818" /db_xref="GeneID:1251957" /translation="MEIKFLSLCILAGVLFVSQVNASANNGKDDVKYAALTQKDLDAL PVEKRASVLDELGFIHEYGLSVPMNRERALQYYKQACELGGNYGCYNVKYAYQYGDGV AKDSAQANKYAKKMNLDNLLIEQEYIDKFSQEIYMAKALADTDKSQRAAFISILIHAL NNRPESDALFFSRIGFNQEKTFRLATLWSQDGDPQMDYQMGRLTLNDFSGRYADEPYQ ARPASLKWFRAAAEKGVVEAQSLLGGIYSGGEGDEWGIKPDIQEAQKWYGQAAKQGDS DAQIALGKIYYSGATGRTDYAKALALFTQVENDGTNSRSTMPLSWMYYNGLGTAPDCD KAWSYYKKASRYVGKKVEEKIFLSKCAADIQSRKNNADALPKVTLKKERIFSRGITAK PKECALIFQIGTDKIRNMANLHITLELKNADGMATEETLMIPPFGLNTLGIDMQNHDV DPLVTPYDLPLYTQDFCHGIGDIHFTLKSATATINGKNVDLLKADSVRFLDKE" gene 491986..493273 /locus_tag="STM0438" /db_xref="GeneID:1251958" regulatory 491986..491991 /regulatory_class="ribosome_binding_site" /locus_tag="STM0438" /note="putative RBS for STM0438; RegulonDB:STMS1H000783" CDS 491990..493273 /locus_tag="STM0438" /note="similar to E. coli orf, hypothetical protein (AAC73748.1); Blastp hit to AAC73748.1 (184 aa), 35% identity in aa 77 - 179, 33% identity in aa 56 - 171" /codon_start=1 /transl_table=11 /product="putative TPR repeat protein" /protein_id="NP_459434.1" /db_xref="GI:16763819" /db_xref="GeneID:1251958" /translation="MDIPQAIKYYEQACDLDGDYGCFNAAYFYEYGIGTQKDITQAKT LAKQLREKINLSNINLDKKVSERIIGSVYSNKLEAYRDLSFRPHFIQGLSFYFYAPQS DERKLLSRIGFDSSHLARIAILWAREGDPEVAYQTAKLVSTLYFNNETKTIDIAEALK WLRISAEKGDADSQTLLGFLYEHAGLGLQPDGEKARKWYEMAAQQGNGEALYTLGRMY YSGVLVNVDYDKALYFFKKAYEKKLQEAADYLAQMYFNGQSVDVDCQQSWHYYDNSYI KKMTQRDYLDYCEKDRKRRNDFNQQLPELTLEKYAGLFGRIDNIPLCQIGFVVNTNKL IHVANLRVELILKNDAGVSDERMVAFPPLGLNTLGAEQGMGDSFKSMGYLLMKNGDLC DYHKLTFTVKSATATINGKKVDLLKTDNLHIIQNR" gene complement(493355..494254) /gene="cyoE" /locus_tag="STM0439" /db_xref="GeneID:1251959" CDS complement(493355..494245) /gene="cyoE" /locus_tag="STM0439" /EC_number="2.5.1.-" /note="similar to E. coli protoheme IX farnesyltransferase (haeme O biosynthesis) (AAC73531.1); Blastp hit to AAC73531.1 (296 aa), 95% identity in aa 1 - 296" /codon_start=1 /transl_table=11 /product="protoheme IX farnesyltransferase" /protein_id="NP_459435.1" /db_xref="GI:16763820" /db_xref="GeneID:1251959" /translation="MMFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLV GVSLVVASGCVFNNYIDRDIDRKMERTKNRVLVKGLISPGVSLVYATLLGIAGFMLLW FGANPLACWLGVMGFVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGDFDS GAAILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKNHITLYIIAFAV ATLMLTLGGYAGYKYLVVAAAVSVWWLGMALRGYKVEDDKVWARKLFGFSIIAITALS IMMSVDFMVPNSQNLLTYVW" regulatory complement(494249..494254) /regulatory_class="ribosome_binding_site" /gene="cyoE" /locus_tag="STM0439" /note="putative RBS for cyoE; RegulonDB:STMS1H000784" gene complement(494257..494600) /gene="cyoD" /locus_tag="STM0440" /db_xref="GeneID:1251960" CDS complement(494257..494586) /gene="cyoD" /locus_tag="STM0440" /note="similar to E. coli cytochrome o ubiquinol oxidase subunit IV (AAC73532.1); Blastp hit to AAC73532.1 (109 aa), 93% identity in aa 1 - 109" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit IV" /protein_id="NP_459436.1" /db_xref="GI:16763821" /db_xref="GeneID:1251960" /translation="MSHSTESGGASHGSVKTYMTGFILSVILTVIPFWMVMTGAASPA VILGSILAMAVVQILVHLVCFLHMNTKSDEGWNMTAFIFTVLIIAILVVGSIWIMWNL NYNMMMH" gene complement(494586..495212) /gene="cyoC" /locus_tag="STM0441" /db_xref="GeneID:1251961" CDS complement(494586..495200) /gene="cyoC" /locus_tag="STM0441" /EC_number="1.10.3.-" /EC_number="1.10.2.-" /note="similar to E. coli cytochrome o ubiquinol oxidase subunit III (AAC73533.1); Blastp hit to AAC73533.1 (204 aa), 96% identity in aa 1 - 204" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit III" /protein_id="NP_459437.1" /db_xref="GI:16763822" /db_xref="GeneID:1251961" /translation="MATDTLTHATAHAHEHGHHDAGQNKIFGFWVYLMSDCILFSILF ATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMHKNNKSQVISWL ALTFLFGAGFIGMELYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVL MVQVARRGLTSTNRTRIMCLSLFWHFLDVIWICVFTVVYLMGAM" regulatory complement(494595..494600) /regulatory_class="ribosome_binding_site" /gene="cyoD" /locus_tag="STM0440" /note="putative RBS for cyoD; RegulonDB:STMS1H000785" gene complement(495190..497193) /gene="cyoB" /locus_tag="STM0442" /db_xref="GeneID:1251962" CDS complement(495190..497181) /gene="cyoB" /locus_tag="STM0442" /EC_number="1.10.3.-" /EC_number="1.10.2.-" /note="similar to E. coli cytochrome o ubiquinol oxidase subunit I (AAC73534.1); Blastp hit to AAC73534.1 (663 aa), 95% identity in aa 1 - 663" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit I" /protein_id="NP_459438.1" /db_xref="GI:16763823" /db_xref="GeneID:1251962" /translation="MFGKLSLDAVPFHEPIVMVTIAAIIVGGLAILAAITYFGKWTYL WKEWLTSVDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQI FTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNLSL GVGEFAQTGWLAYPPLSGIEYSPSVGVDYWIWALQLSGIGTTLTGINFFVTILKMRAP GMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYI NLIWAWGHPEVYILILPVFGVFSEIAATFSRKRLFGYTSLVWATVCITVLSFIVWLHH FFTMGAGANVNAFFGITTMIIAIPTGVKIFNWLFTMYQGRIVFHSAMMWTIGFIVTFS VGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAFGFKLNE TWGKRAFWFWIIGFFVAFMPLYVLGFMGMTRRLSQQIDPQFHTMLMVAAAGAALIALG ILCQLIQIFVSIRDRDQNRDLTGDPWGGRTLEWSTSSPPPFYNFAVVPHVHERDAFWE MKEKGEAYQQPGQYEEIHMPKNSGAGIVIAAFATVFGFAMIWHIWWLAIVGFAGMIIS WIVKSFDEDVDYYVPVPEVEKLENQHFDEITKAGLKNGN" regulatory complement(495207..495212) /regulatory_class="ribosome_binding_site" /gene="cyoC" /locus_tag="STM0441" /note="putative RBS for cyoC; RegulonDB:STMS1H000786" regulatory complement(497188..497193) /regulatory_class="ribosome_binding_site" /gene="cyoB" /locus_tag="STM0442" /note="putative RBS for cyoB; RegulonDB:STMS1H000787" gene complement(497192..498229) /gene="cyoA" /locus_tag="STM0443" /db_xref="GeneID:1251963" CDS complement(497192..498148) /gene="cyoA" /locus_tag="STM0443" /EC_number="1.10.3.-" /EC_number="1.10.2.-" /note="similar to E. coli cytochrome o ubiquinol oxidase subunit II (AAC73535.1); Blastp hit to AAC73535.1 (315 aa), 95% identity in aa 1 - 315" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit II" /protein_id="NP_459439.1" /db_xref="GI:16763824" /db_xref="GeneID:1251963" /translation="MRLRKYNKSLGWLSLIAGTALLSGCNSALLDPKGQIGLEQRSLI LTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIF LAVLTWKTTHALEPSKPLAHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTP VYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGM KFKAIATKDRAEFDQWVAKAKQSPNTMNDMAAFEKVAMPSEYNKVEYFSSVKPDLFKD VINKFMGHGKSMDMTQPEGEHSSHEGMEGMDMSHAESANSKG" regulatory complement(498162..498167) /regulatory_class="ribosome_binding_site" /gene="cyoA" /locus_tag="STM0443" /note="putative RBS for cyoA; RegulonDB:STMS1H000788" regulatory complement(498205..498213) /regulatory_class="minus_10_signal" /gene="cyoA" /locus_tag="STM0443" /note="putative -10_signal for cyoA; RegulonDB:STMLTH004674" regulatory complement(498221..498229) /regulatory_class="minus_35_signal" /gene="cyoA" /locus_tag="STM0443" /note="putative -35_signal for cyoA; RegulonDB:STMLTH004674" protein_bind complement(498365..498427) /note="putative binding site for ArcA, RegulonDB: STMS1H000013" /bound_moiety="ArcA" gene complement(498601..500094) /gene="ampG" /locus_tag="STM0444" /db_xref="GeneID:1251964" CDS complement(498601..500076) /gene="ampG" /locus_tag="STM0444" /note="similar to E. coli regulates beta-lactamase synthesis (AAC73536.1); Blastp hit to AAC73536.1 (491 aa), 91% identity in aa 1 - 490" /codon_start=1 /transl_table=11 /product="muropeptide transporter AmpG" /protein_id="NP_459440.1" /db_xref="GI:16763825" /db_xref="GeneID:1251964" /translation="MSSQYLRIFQQPRSAILLILGFASGLPLALTSGTLQAWMTVENI DLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLAAIAAMGFLE PGTQLRWMAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSG GLALWLADRWLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPSPKSLEQAVVAPLRDF FGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGA LYGGILMQRLSLFRALLIFGILQGASNAGYWLLSITDKNMFSMGAAVFFENLCGGMGT AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVVAA VPGLLLLLVCRQTLEYSWQSERFIPRTQYRGAYNFALSILLAGVALLAVWVLLLTMNA VDYTNFSFLPELLETAVVVAVCGIVFGGLLDYLALRKTRLL" regulatory complement(500089..500094) /regulatory_class="ribosome_binding_site" /gene="ampG" /locus_tag="STM0444" /note="putative RBS for ampG; RegulonDB:STMS1H000789" gene complement(500120..500760) /gene="yajG" /locus_tag="STM0445" /db_xref="GeneID:1251965" CDS complement(500120..500752) /gene="yajG" /locus_tag="STM0445" /note="similar to E. coli putative polymerase/proteinase (AAC73537.1); Blastp hit to AAC73537.1 (226 aa), 85% identity in aa 20 - 226" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459441.3" /db_xref="GI:1109557588" /db_xref="GeneID:1251965" /translation="MMAGIFTYHVLSVIESLNMLKKLLFPLVALFMLAGCATPPTTID VAPKITLPQQDPSLMGVTVSITGADQRQDQALAKVTRNNQLVTLTASRDLRFLLQEVL EKQMTARGYMIGPNGAVNLQIIVNQLYADVSQGSVRYNIATKADIAIIATAANGSKMT KNYRANYSIEGAFQASNQNIADAVNSVLTDTIADMSQDTSIHDFIKQNAR" regulatory complement(500755..500760) /regulatory_class="ribosome_binding_site" /gene="yajG" /locus_tag="STM0445" /note="putative RBS for yajG; RegulonDB:STMS1H000790" gene 500990..501319 /gene="bolA" /locus_tag="STM0446" /db_xref="GeneID:1251966" regulatory 500990..500995 /regulatory_class="ribosome_binding_site" /gene="bolA" /locus_tag="STM0446" /note="putative RBS for bolA; RegulonDB:STMS1H000791" CDS 501002..501319 /gene="bolA" /locus_tag="STM0446" /note="similar to E. coli possible regulator of murein genes (AAC73538.1); Blastp hit to AAC73538.1 (116 aa), 92% identity in aa 12 - 116" /codon_start=1 /transl_table=11 /product="BolA family transcriptional regulator" /protein_id="NP_459442.1" /db_xref="GI:16763827" /db_xref="GeneID:1251966" /translation="MMIREQIEEKLRTAFDPVFLEVVDESYRHNVPAGSESHFKVVLV SDRFTGERFLNRHRMIYGTLTAELSTTVHALALHTYTLKEWEGLQDTIFASPPCRGAG SIA" gene 501655..502964 /gene="tig" /locus_tag="STM0447" /db_xref="GeneID:1251967" regulatory 501655..501660 /regulatory_class="ribosome_binding_site" /gene="tig" /locus_tag="STM0447" /note="putative RBS for tig; RegulonDB:STMS1H000792" CDS 501666..502964 /gene="tig" /locus_tag="STM0447" /note="trigger factor; a molecular chaperone involved in cell division; similar to E. coli trigger factor; a molecular chaperone involved in cell division (AAC73539.1); Blastp hit to AAC73539.1 (432 aa), 95% identity in aa 1 - 432" /codon_start=1 /transl_table=11 /product="trigger factor" /protein_id="NP_459443.1" /db_xref="GI:16763828" /db_xref="GeneID:1251967" /translation="MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGF RKGKVPMNIVAQRYGASVRQDVLGDLMSRNFVDAIIKEKINPAGAPNYVPGEYKVGED FTYSVEFEVYPEVELTGLESIEVEKPVVEVTDADVDVMLDTLRKQQATWKEKDGAADA EDRVTIDFTGSVDGEEFEGGKATDFVLAMGQGRMIPGFEDGVKGHKAGEEFTIDVTFP EEYHAENLKGKAAKFVINLKKVEERELPELTEEFIKRFGVEDGSVAGLRAEVRKNMER ELKGAVRNRVKSQAIEGLVKANDIDVPSALIDSEIDVLRRQAAQRFGGNEKQALELPR ELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKGLIEEMASAYEDPKEVIEFYSKNK ELMDNMRNVALEEQAVEAVLAKAKVSEKATSFNELMNQQA" gene 503199..503834 /gene="clpP" /locus_tag="STM0448" /db_xref="GeneID:1251968" regulatory 503199..503204 /regulatory_class="ribosome_binding_site" /gene="clpP" /locus_tag="STM0448" /note="putative RBS for clpP; RegulonDB:STMS1H000793" CDS 503211..503834 /gene="clpP" /locus_tag="STM0448" /EC_number="3.4.21.92" /note="heat shock protein F21.5; similar to E. coli ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5 (AAC73540.1); Blastp hit to AAC73540.1 (207 aa), 99% identity in aa 1 - 207" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp endopeptidase, proteolytic subunit ClpP" /protein_id="NP_459444.1" /db_xref="GI:16763829" /db_xref="GeneID:1251968" /translation="MSYSGERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIF LTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVS TICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVK GRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN" gene 504073..505357 /gene="clpX" /locus_tag="STM0449" /db_xref="GeneID:1251969" regulatory 504073..504078 /regulatory_class="ribosome_binding_site" /gene="clpX" /locus_tag="STM0449" /note="putative RBS for clpX; RegulonDB:STMS1H000794" CDS 504086..505357 /gene="clpX" /locus_tag="STM0449" /note="similar to E. coli ATP-dependent specificity component of clpP serine protease, chaperone (AAC73541.1); Blastp hit to AAC73541.1 (424 aa), 98% identity in aa 1 - 424" /codon_start=1 /transl_table=11 /product="ATP-dependent protease ATP-binding subunit ClpX" /protein_id="NP_459445.1" /db_xref="GI:16763830" /db_xref="GeneID:1251969" /translation="MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLC NDIIREEIKEVAPHRERSALPTPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG DTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN IIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKA KSDKASEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALT KQYQALFNLEGVDLEFRDEALDAIARKAMARKTGARGLRSIVEAALLDTMYDLPSMED VEKVVIDESVIAGQSKPLLIYGKPEAQASGE" gene 505532..507897 /gene="lon" /locus_tag="STM0450" /db_xref="GeneID:1251970" regulatory 505532..505537 /regulatory_class="ribosome_binding_site" /gene="lon" /locus_tag="STM0450" /note="putative RBS for lon; RegulonDB:STMS1H000795" CDS 505543..507897 /gene="lon" /locus_tag="STM0450" /EC_number="3.4.21.53" /note="ATP-dependent protease la; cleaves RcsA and SulA; heat shock k-protein (DNA binding activity); similar to E. coli DNA-binding, ATP-dependent protease La; heat shock K-protein (AAC73542.1); Blastp hit to AAC73542.1 (784 aa), 99% identity in aa 1 - 784" /codon_start=1 /transl_table=11 /product="endopeptidase La" /protein_id="NP_459446.1" /db_xref="GI:16763831" /db_xref="GeneID:1251970" /translation="MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAM DHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISA LSDNGEHFSAKAEYLDSPAIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSID DPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVK KQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQ KLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRI LEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYIRMALGGVRDEAEIR GHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNV AFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLP KQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLK HIEINGDNLHDYLGVQRFDYGRADSENRVGQVTGLAWTEVGGDLLTIETACVPGKGKL TYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGI AMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFEN KRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGMQVVTAK" gene 508058..508378 /gene="hupB" /locus_tag="STM0451" /db_xref="GeneID:1251971" regulatory 508058..508066 /regulatory_class="minus_35_signal" /gene="hupB" /locus_tag="STM0451" /note="putative -35_signal for hupB; RegulonDB:STMLTH004679" regulatory 508085..508093 /regulatory_class="minus_10_signal" /gene="hupB" /locus_tag="STM0451" /note="putative -10_signal for hupB; RegulonDB:STMLTH004679" regulatory 508093..508098 /regulatory_class="ribosome_binding_site" /gene="hupB" /locus_tag="STM0451" /note="putative RBS for hupB; RegulonDB:STMS1H000796" CDS 508106..508378 /gene="hupB" /locus_tag="STM0451" /note="DNA-binding protein HU-beta (NS1) (HU-1). (SW:DBHB_SALTY)" /codon_start=1 /transl_table=11 /product="DNA-binding protein HU" /protein_id="NP_459447.1" /db_xref="GI:16763832" /db_xref="GeneID:1251971" /translation="MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVAL VGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN" gene 508651..510540 /gene="cypD" /locus_tag="STM0452" /db_xref="GeneID:1251972" regulatory 508651..508656 /regulatory_class="ribosome_binding_site" /gene="cypD" /locus_tag="STM0452" /note="putative RBS for cypD; RegulonDB:STMS1H000797" CDS 508669..510540 /gene="cypD" /locus_tag="STM0452" /EC_number="5.2.1.8" /note="similar to E. coli putative protease maturation protein (AAC73544.1); Blastp hit to AAC73544.1 (623 aa), 88% identity in aa 1 - 623" /codon_start=1 /transl_table=11 /product="peptidylprolyl isomerase" /protein_id="NP_459448.1" /db_xref="GI:16763833" /db_xref="GeneID:1251972" /translation="MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSNNYAAK VNGQEISRAQFENAFNNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLD QYSRELKLGISDEQVKQAIFATPAFQVDGKFDNNRYNAIVNQMGMTADQYAQALRNQL TTQQLINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYY DQNKVRFMTPEQFRVSYIKLDAATMQAPVSDADIQAYYDQHVDQFTQPERIRYSIIQT KTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNAGLKE KGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVS DAASNDNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPG PNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLV ELKAGKGAEAMKAAGLSFGEPKTLSRTSQDPVSQAAFALSLPTKDKPVYGVANDMQGN VVLLAFDEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ" gene 510676..511064 /gene="ybaV" /locus_tag="STM0453" /db_xref="GeneID:1251973" regulatory 510676..510681 /regulatory_class="ribosome_binding_site" /gene="ybaV" /locus_tag="STM0453" /note="putative RBS for ybaV; RegulonDB:STMS1H000798" CDS 510690..511064 /gene="ybaV" /locus_tag="STM0453" /note="similar to E. coli orf, hypothetical protein (AAC73545.1); Blastp hit to AAC73545.1 (123 aa), 83% identity in aa 1 - 123" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459449.1" /db_xref="GI:16763834" /db_xref="GeneID:1251973" /translation="MKHGIKALLITLSLTCAGMAHSALAATPVAKNAAVETKADTPSS SSAKAALPAKASDDEGTRVSINTASAEDLARVMNGVGLKKAQAIVSYREEYGPFKTVD DLKQVPGMGSALVERNLAVLTL" gene 511154..511566 /gene="ybaW" /locus_tag="STM0454" /db_xref="GeneID:1251974" regulatory 511154..511159 /regulatory_class="ribosome_binding_site" /gene="ybaW" /locus_tag="STM0454" /note="putative RBS for ybaW; RegulonDB:STMS1H000799" CDS 511168..511566 /gene="ybaW" /locus_tag="STM0454" /note="similar to E. coli orf, hypothetical protein (AAC73546.1); Blastp hit to AAC73546.1 (132 aa), 94% identity in aa 1 - 132" /codon_start=1 /transl_table=11 /product="thioesterase" /protein_id="NP_459450.1" /db_xref="GI:16763835" /db_xref="GeneID:1251974" /translation="MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWM TARNIAFVVVNININYRRPAVLSDLLTVTSQVQQLNGKSGVLSQTITLEPEGQVVADA LITFVCIDLKTQKALPLEGELREKLEQMVQ" gene complement(511672..512377) /gene="ybaX" /locus_tag="STM0455" /db_xref="GeneID:1251975" CDS complement(511672..512367) /gene="ybaX" /locus_tag="STM0455" /note="similar to E. coli orf, hypothetical protein (AAC73547.1); Blastp hit to AAC73547.1 (231 aa), 93% identity in aa 1 - 231" /codon_start=1 /transl_table=11 /product="7-cyano-7-deazaguanine synthase QueC" /protein_id="NP_459451.1" /db_xref="GI:16763836" /db_xref="GeneID:1251975" /translation="MKRAVVVFSGGQDSTTCLAQARHQYDEVHCVTFDYGQRHRAEID VARALALKLGARAHKVLDVTLLNELAVSSLTRDSIPVPDYEPNADGIPNTFVPGRNIL FLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVNLGMAKDIRFETPL MWIDKAETWALADYWGQLDLVREETLTCYNGIKGDGCGHCAACNLRANGLNHYLSNKA AVMAAMKQKTGLR" regulatory complement(512372..512377) /regulatory_class="ribosome_binding_site" /gene="ybaX" /locus_tag="STM0455" /note="putative RBS for ybaX; RegulonDB:STMS1H000800" gene complement(512432..514142) /gene="ybaE" /locus_tag="STM0456" /db_xref="GeneID:1251976" CDS complement(512432..514132) /gene="ybaE" /locus_tag="STM0456" /note="similar to E. coli orf, hypothetical protein (AAC73548.1); Blastp hit to AAC73548.1 (566 aa), 79% identity in aa 1 - 565" /codon_start=1 /transl_table=11 /product="peptide ABC transporter substrate-binding protein" /protein_id="NP_459452.1" /db_xref="GI:16763837" /db_xref="GeneID:1251976" /translation="MRLLNRLNQYQRLWQPSAGETQHVTVSELAERCFCSERHLRTLL RQAQQAGWLRWEAQSGRGKRGRLQFLVTPESLRTAMMEQALEKGQQLNVLELAQLAPG ELRAMLQPFMGGQWQNDTPTLRIPYYRPLDPLQPGFLPGRAEQHLAGQVFSGLTRFDR DSQYPCGDLAHHWEVSADGLRWDFYIRSTLHWHNGDAVDTAQLHERLERLLTLPALSK LFISVARIEVTHPQCLTFLLHRPDYWLAHRLASYCSGLAHPDLPLIGTGPFRLALFTP ELVRLESHDHYHLSHPLLKAIEFWITPQLFAQDLGTSCRHPVQIAIGKPEELATLSQV SSGISLGFCYLTLKKGSRLNVQQARRLIHIIHHTSLLKTLPVDENLIMPSQGLLPGWT IPQWQDVDETPLPKKLTLAYHLPVELHTMAEQLRHYLATLGCELTLIFHNAKNWDNCP ALAQADLMMGDRLIGEAPEYTLEQWLRCDQIWSHVLDAPAFSHLQATLDALQIQPNEK DRRAALQQVFANLMDDATLTPLFNYHYRISAPPGVNGVRLTPRGWFEFSEAWLPPPSP " regulatory complement(514137..514142) /regulatory_class="ribosome_binding_site" /gene="ybaE" /locus_tag="STM0456" /note="putative RBS for ybaE; RegulonDB:STMS1H000801" gene 514221..515051 /gene="cof" /locus_tag="STM0457" /db_xref="GeneID:1251977" regulatory 514221..514226 /regulatory_class="ribosome_binding_site" /gene="cof" /locus_tag="STM0457" /note="putative RBS for cof; RegulonDB:STMS1H000802" CDS 514233..515051 /gene="cof" /locus_tag="STM0457" /note="similar to E. coli orf, hypothetical protein (AAC73549.1); Blastp hit to AAC73549.1 (276 aa), 81% identity in aa 5 - 276" /codon_start=1 /transl_table=11 /product="thiamin pyrimidine pyrophosphate hydrolase" /protein_id="NP_459453.1" /db_xref="GI:16763838" /db_xref="GeneID:1251977" /translation="MARLAAFDMDGTLLMPDHHLGRETIATLARLRERDITLTFATGR HVLEMRHILGTLSLDAYLITGNGTRIHSLEGDVLHRQDLDPQVADTVMHHAWDTRASM HVFNDNGWFTGQEIPALLQAHVYSGFRYQVIDIKSIPAHQVTKICFCGDHDDLIRLRI QLNEALEERAHLCFSAVDCLEVLPLGCNKGSALAVLSNHLGLSLADCMAFGDAMNDRE MLGSVGRGLIMGNAMPQLIAALPHLSVIGHCGNQAVSHFLTHWLDNPHLPYSPE" gene complement(515101..516161) /locus_tag="STM0458" /db_xref="GeneID:1251978" CDS complement(515101..516156) /locus_tag="STM0458" /note="similar to E. coli cysteine synthase B, O-acetylserine sulfhydrolase B (AAC75474.1); Blastp hit to AAC75474.1 (303 aa), 26% identity in aa 6 - 207, 35% identity in aa 198 - 289" /codon_start=1 /transl_table=11 /product="putative cysteine synthase/cystathionine beta-synthase" /protein_id="NP_459454.1" /db_xref="GI:16763839" /db_xref="GeneID:1251978" /translation="MMSSNWVKNAINEINADHQRSADTHLIRLPLSAFPGIQLYLKDE STHPTGSLKHRLARSLFLYGLCNGWIKEGTPIIEASSGSTAISEAWFARLLGLPFIAV MPACTAKRKIEQIQFYGGHCHFVESACEIYAASERLAHELNGHYMDQFTYAERATDWR GNNNIADSIFRQMRNELHPVPRFIVMSAGTGGTSATIGRYIRCQGYDTQLMVVDPENS VFLPYWQDRDASLRSPVGSKIEGIGRPRVEPSFIPDVVDEMLRVPDAASVATAHWLET QLGRKVGASTGTNMWGALQLAARMREAGETGAIVTLLCDSGDRYLDTYYHPAWVSDHI GDLTPWSAAIAKLLTGD" regulatory complement(516156..516161) /regulatory_class="ribosome_binding_site" /locus_tag="STM0458" /note="putative RBS for STM0458; RegulonDB:STMS1H000803" gene 516258..516727 /gene="ybaO" /locus_tag="STM0459" /db_xref="GeneID:1251979" regulatory 516258..516263 /regulatory_class="ribosome_binding_site" /gene="ybaO" /locus_tag="STM0459" /note="putative RBS for ybaO; RegulonDB:STMS1H000804" CDS 516269..516727 /gene="ybaO" /locus_tag="STM0459" /note="similar to E. coli putative LRP-like transcriptional regulator (AAC73550.1); Blastp hit to AAC73550.1 (181 aa), 95% identity in aa 30 - 181" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_459455.1" /db_xref="GI:16763840" /db_xref="GeneID:1251979" /translation="MLDKIDRKLLCLLQQDCTLSLQALADAVNLTTTPCWKRLKRLED DGILLGRVALLDPEKLGLGLTAFVLIKTQHHSSEWYCRFVTVVSEMPEVLGFWRMAGE YDYLMRVQVADMKRYDDFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE" gene 516755..518540 /gene="mdlA" /locus_tag="STM0460" /db_xref="GeneID:1251980" regulatory 516755..516760 /regulatory_class="ribosome_binding_site" /gene="mdlA" /locus_tag="STM0460" /note="putative RBS for mdlA; RegulonDB:STMS1H000805" CDS 516768..518540 /gene="mdlA" /locus_tag="STM0460" /note="similar to E. coli ATP-binding component of a transport system (AAC73551.1); Blastp hit to AAC73551.1 (590 aa), 88% identity in aa 1 - 590" /codon_start=1 /transl_table=11 /product="multidrug ABC transporter permease/ATP-binding protein" /protein_id="NP_459456.1" /db_xref="GI:16763841" /db_xref="GeneID:1251980" /translation="MRLFAQLSWYFRREWRRYLGAVALLMLIAMLQLIPPKVVGIVVD GVTAQQFTPGRIAMWIGTIALIAVVVYLLRYVWRVLLFGASYQLAVELREDYYRQLSR QHPEFYQRHRTGDLIARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQL TLLALLPMPIMALMIKRYGDRLHDYFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR QSSLFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAISGGSWMVVNGSLTLGE LTSFMMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGEEPVPAGRGE LTAAIREFCYPQTTHPALENVNFRLKPGQMLGICGPTGAGKSTILSLIQRHFDVTQGE IRFHDMPLTHLQLDSWRSRLAVVSQTPFLFSDSIANNIALGRPEATQEEIEQVARLAS VHEDILRLPQGYDTQVGERGVMLSGGQKQRISIARALLLNAEILLLDDALSAVDGRTE HQILHNLRQWGEGRTVIISAHRLSALTDANEIIVMQHGHVVQRGDHDQLAQQIGWYRD MYRYQQLEAALDDAPERGEEAVNA" gene 518520..520314 /gene="mdlB" /locus_tag="STM0461" /db_xref="GeneID:1251981" regulatory 518520..518525 /regulatory_class="ribosome_binding_site" /gene="mdlA" /locus_tag="STM0460" /note="putative RBS for mdlB; RegulonDB:STMS1H000806" CDS 518533..520314 /gene="mdlB" /locus_tag="STM0461" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73552.1); Blastp hit to AAC73552.1 (593 aa), 88% identity in aa 1 - 593" /codon_start=1 /transl_table=11 /product="multidrug ABC transporter permease/ATP-binding protein" /protein_id="NP_459457.1" /db_xref="GI:16763842" /db_xref="GeneID:1251981" /translation="MRSFGQLWPTLKRLLAYGSPWRKPLSVAVMMLWIAAAAEVSGPL LISYFIDNMVARHHLPLGKVAGLAAAYVGLQFLAAGLHYAQSLLFNRAAVGVVQSLRT DVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAM FSLDWRMALVAILIFPAVLTVMIIYQRYSTPIVRRVRAYLADINDGFNEIINGMSVIQ QFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFSFTSA GTIEVGVLYAFISYLSRLNEPLIELTTQQSMLQQAVVAGERVFELMDRPRQRYGSDDR PLQSGAIDIDHLSFAYRDDNLVLQDITLSVPSRSFVALVGHTGSGKSTLASLLMGYYP LTQGEIRLDGREIASLNHRVLRQGVAMVQQDPVVMADTFLANVTLGRDVSEAQVWQAL ETVQLADLARGLSDGLHTHLGEQGNTLSVGQKQLLALARVLVDAPQILILDEATASID SGTEQAIQQALAAIRERTTLVVIAHRLSTIVEADTILVLHRGQAVERGTHQQLLAAQG RYWQMYQLQLVGEELAASVHEEPGPAA" gene 520515..520865 /gene="glnK" /locus_tag="STM0462" /db_xref="GeneID:1251982" regulatory 520515..520520 /regulatory_class="ribosome_binding_site" /gene="glnK" /locus_tag="STM0462" /note="putative RBS for glnK; RegulonDB:STMS1H000807" CDS 520527..520865 /gene="glnK" /locus_tag="STM0462" /note="nitrogen assimilation by glutamine synthetase; regulates GlnL (NRII) and GlnE (ATase); similar to E. coli nitrogen regulatory protein P-II 2 (AAC73553.1); Blastp hit to AAC73553.1 (112 aa), 97% identity in aa 1 - 112" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_459458.1" /db_xref="GI:16763843" /db_xref="GeneID:1251982" /translation="MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAE LYRGAEYSVNFLPKVKIDVAIADDQLEEVIDIISKAAYTGKIGDGKIFVAELMRVIRI RTGEADEAAL" gene 520883..522183 /gene="amtB" /locus_tag="STM0463" /db_xref="GeneID:1251983" regulatory 520883..520888 /regulatory_class="ribosome_binding_site" /gene="amtB" /locus_tag="STM0463" /note="putative RBS for amtB; RegulonDB:STMS1H000808" CDS 520897..522183 /gene="amtB" /locus_tag="STM0463" /note="similar to E. coli probable ammonium transporter (AAC73554.1); Blastp hit to AAC73554.1 (428 aa), 92% identity in aa 1 - 428" /codon_start=1 /transl_table=11 /product="ammonium transporter" /protein_id="NP_459459.1" /db_xref="GI:16763844" /db_xref="GeneID:1251983" /translation="MKIAMIKTTLASLALLPGLTIAAPAVADKADSAFMMICTALVLF MTIPGIALFYGGLIRAKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEGNHFFGNADG AMLKNIALTAVTGTIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWFTL SYIPIAHMVWGGGLLAAHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPH NLPMVFTGTAILYIGWFGFNAGSAGSANEIAALAFVNTVVATAAAILGWIIGEWTLRG KPSLLGACSGAIAGLVGVTPACGYVGVGGALVIGVIAGLAGLWGVTMLKRLLRVDDPC DVFGVHGVCGIVGCILTGVFAASSLGGVGFVDGVTMGHQVMVQLESIAITVVWSGVVA FVGYKLADILVGLRVPEEQEREGLDVNSHGENAYNA" gene complement(522283..523156) /gene="tesB" /locus_tag="STM0464" /db_xref="GeneID:1251984" CDS complement(522283..523143) /gene="tesB" /locus_tag="STM0464" /EC_number="3.1.2.-" /note="similar to E. coli acyl-CoA thioesterase II (AAC73555.1); Blastp hit to AAC73555.1 (286 aa), 91% identity in aa 1 - 286" /codon_start=1 /transl_table=11 /product="acyl-CoA thioesterase II" /protein_id="NP_459460.1" /db_xref="GI:16763845" /db_xref="GeneID:1251984" /translation="MSQTLNNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQAL YAAKETVPEARLVHSFHSYFLRPGDSQKPIIYDVEVLRDGNSFSARRVAAIQNGKPIF YMTASFQAPEPGFEHQKTMPTVVGPEGLPSETEIAQSLAHLLPPILKEKFLCDRPLEI RPVEFHNPLKGHVAAPVRQVWIRANGTVPDDIRVHQYLLGYASDLNFLPVALQPHGIG FLEKGIQIATIDHSMWFHRPFNFNEWLLYSVESTSASSARGFVRGEFYTQDGALVAST VQEGVMRNHN" regulatory complement(523151..523156) /regulatory_class="ribosome_binding_site" /gene="tesB" /locus_tag="STM0464" /note="putative RBS for tesB; RegulonDB:STMS1H000809" gene 523346..523927 /gene="ybaY" /locus_tag="STM0465" /db_xref="GeneID:1251985" regulatory 523346..523351 /regulatory_class="ribosome_binding_site" /gene="ybaY" /locus_tag="STM0465" /note="putative RBS for ybaY; RegulonDB:STMS1H000810" CDS 523358..523927 /gene="ybaY" /locus_tag="STM0465" /note="similar to E. coli glycoprotein/polysaccharide metabolism (AAC73556.1); Blastp hit to AAC73556.1 (190 aa), 88% identity in aa 1 - 190" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459461.1" /db_xref="GI:16763846" /db_xref="GeneID:1251985" /translation="MKLVHIVSGLAVAISLAACADKSADIQTPAPNPNMSITANQSTI QQPNVSGTVWIRQKVALPPDAVLTVTLSDASLADAPSKVLSQKAVRTEGKQAPFSFVL PFNPSDIQPNARILLSAAITVDNKLVFITDSVKPVINNGGTKADLTLVPVQQTAVPVQ ASGGATTTVPSTSPTQVNSSSAVPAPTQY" gene complement(523960..524359) /gene="ybaZ" /locus_tag="STM0466" /db_xref="GeneID:1251986" CDS complement(523960..524349) /gene="ybaZ" /locus_tag="STM0466" /note="similar to E. coli orf, hypothetical protein (AAC73557.1); Blastp hit to AAC73557.1 (129 aa), 82% identity in aa 1 - 129" /codon_start=1 /transl_table=11 /product="putative methyltransferase" /protein_id="NP_459462.1" /db_xref="GI:16763847" /db_xref="GeneID:1251986" /translation="MLVSCASGLSSPLIPDYPEALTQDSIMDIQDTFPQRVWQIVASI PEGFVTTYGDVARLAGSPRAARQVGGVLKRLPEGSTLPWHRVVNRHGAISLTGPDLQR QRQALLAEGVVVSGSGQIDLQRYRWVY" regulatory complement(524354..524359) /regulatory_class="ribosome_binding_site" /gene="ybaZ" /locus_tag="STM0466" /note="putative RBS for ybaZ; RegulonDB:STMS1H000811" gene 524427..524542 /gene="ffs" /locus_tag="STM0467" /db_xref="GeneID:1251987" ncRNA 524427..524542 /ncRNA_class="SRP_RNA" /gene="ffs" /locus_tag="STM0467" /product="signal recognition particle, RNA component" /db_xref="GeneID:1251987" gene complement(524580..526142) /gene="ylaB" /locus_tag="STM0468" /db_xref="GeneID:1251988" CDS complement(524580..526130) /gene="ylaB" /locus_tag="STM0468" /note="similar to E. coli orf, hypothetical protein (AAC73559.1); Blastp hit to AAC73559.1 (518 aa), 67% identity in aa 3 - 518" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459463.1" /db_xref="GI:16763848" /db_xref="GeneID:1251988" /translation="MTTRHLVSLVTGVLILSVLFPIGLSLWLAHRQVEKRFNEELDIF SSRVALRTERVSDQAKAALTHIASFKGEPCSSAHLLAMRRVSYSFRYVQEVLYLKNSI PVCSSLEKESHIPAFPPPMKITRDGYRAWFTAQNDLGIKRYMAALGSDSYIVMIDPAS FIDVIPFGAWPIDVAIIGRERNTVVASSGNLDPAILPLIHHETPLRLENRGIQYAIHP FPEMGITIVSWAPTAPLERSWYRQAFIWLPAGIVTGLLAAAFILRILRRLQSPRHRLQ DAIDNREINVHYQPIVSLSSGKIVGAEALARWQQADGTFLSPEIFIALAEQTGLTEPL TRLIIDTVFEDMGSWLKSHPEQHISINLEASDLASETLPTLLSTLLNRSQISPSQIAL ELTEREFADPKTSAPIVARYRNAGHSIYIDDFGTGYSSLSYLQNLDVDVLKIDKSFVD ALEYKNVTPHIIEMAKTLKLKMVAEGIETARQEQWLRQHGVHYGQGWLYSKPLPATAF ILWAEQRL" regulatory complement(526137..526142) /regulatory_class="ribosome_binding_site" /gene="ylaB" /locus_tag="STM0468" /note="putative RBS for ylaB; RegulonDB:STMS1H000812" gene 526346..526615 /gene="rpmE2" /locus_tag="STM0469" /db_xref="GeneID:1251989" regulatory 526346..526351 /regulatory_class="ribosome_binding_site" /gene="rpmE2" /locus_tag="STM0469" /note="putative RBS for rpmE2; RegulonDB:STMS1H000813" CDS 526355..526615 /gene="rpmE2" /locus_tag="STM0469" /note="similar to E. coli putative ribosomal protein (AAC73399.1); Blastp hit to AAC73399.1 (87 aa), 74% identity in aa 1 - 86" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L31" /protein_id="NP_459464.1" /db_xref="GI:16763849" /db_xref="GeneID:1251989" /translation="MKPDIHPVYRTVVFHDTSANEYVKVGSTIKTEREIELDGVTYPY VTIDVSSKSHPFYTGRQKTFDSESSAARFQKRFGHFIGAKRG" gene 526616..526761 /gene="rpmJ2" /locus_tag="STM0470" /db_xref="GeneID:1251990" regulatory 526616..526621 /regulatory_class="ribosome_binding_site" /gene="rpmJ2" /locus_tag="STM0470" /note="putative RBS for rpmJ2; RegulonDB:STMS1H000814" CDS 526621..526761 /gene="rpmJ2" /locus_tag="STM0470" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L36" /protein_id="NP_459465.1" /db_xref="GI:16763850" /db_xref="GeneID:1251990" /translation="MQVLNSLRNAKQRHPDCQIVKRKGRLYVICKTNPRFKAVQGRKK RR" gene complement(526817..527297) /gene="ylaC" /locus_tag="STM0471" /db_xref="GeneID:1251991" CDS complement(526817..527287) /gene="ylaC" /locus_tag="STM0471" /note="similar to E. coli orf, hypothetical protein (AAC73560.1); Blastp hit to AAC73560.1 (169 aa), 80% identity in aa 14 - 168" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459466.1" /db_xref="GI:16763851" /db_xref="GeneID:1251991" /translation="MTEIQRLLSETIDDLNIREKRDNRPRFSISFIRKHPGLFIAMYA AWFATLAVMLQSETLVGSVWLLVVLFIAFNGFFFFDIAPRYHYNDIDVLDLRVCYNGE WYNTRFVPPTLIETILQSPQVDNEHKVQLQKMVARKGELSFYDIFTLARAEASR" regulatory complement(527292..527297) /regulatory_class="ribosome_binding_site" /gene="ylaC" /locus_tag="STM0471" /note="putative RBS for ylaC; RegulonDB:STMS1H000815" gene complement(527404..527969) /gene="maa" /locus_tag="STM0472" /db_xref="GeneID:1251992" CDS complement(527404..527955) /gene="maa" /locus_tag="STM0472" /EC_number="2.3.1.-" /note="similar to E. coli putative transferase (AAC73561.1); Blastp hit to AAC73561.1 (183 aa), 79% identity in aa 1 - 183" /codon_start=1 /transl_table=11 /product="maltose O-acetyltransferase" /protein_id="NP_459467.1" /db_xref="GI:16763852" /db_xref="GeneID:1251992" /translation="MSDEKQKMIAGALYCPTDETLCQDRLRARQLIHQYNYTTPDEIN KRQAILRDLLGRCEDAYIEPSFRCDYGYNIFLGHSFYANFDCVMLDVCPIHIGDNCML APGVHIYTATHPLDAVERNSGRELGKPVTIGNNVWIGGRAVVNPGVTIGDNVVVASGA VVIKNVPPDVVVGGNPARIIKKL" regulatory complement(527964..527969) /regulatory_class="ribosome_binding_site" /gene="maa" /locus_tag="STM0472" /note="putative RBS for maa; RegulonDB:STMS1H000816" gene complement(528134..528364) /gene="hha" /locus_tag="STM0473" /db_xref="GeneID:1251993" CDS complement(528134..528352) /gene="hha" /locus_tag="STM0473" /note="similar to E. coli haemolysin expression modulating protein (AAC73562.1); Blastp hit to AAC73562.1 (72 aa), 98% identity in aa 1 - 72" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_459468.1" /db_xref="GI:16763853" /db_xref="GeneID:1251993" /translation="MSDKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFY SAADHRLAELTMNKLYDKIPSSVWKFIR" regulatory complement(528359..528364) /regulatory_class="ribosome_binding_site" /gene="hha" /locus_tag="STM0473" /note="putative RBS for hha; RegulonDB:STMS1H000817" gene complement(528380..528767) /gene="ybaJ" /locus_tag="STM0474" /db_xref="GeneID:1251994" CDS complement(528380..528754) /gene="ybaJ" /locus_tag="STM0474" /note="similar to E. coli orf, hypothetical protein (AAC73563.1); Blastp hit to AAC73563.1 (124 aa), 95% identity in aa 1 - 124" /codon_start=1 /transl_table=11 /product="Hha toxicity attenuator" /protein_id="NP_459469.1" /db_xref="GI:16763854" /db_xref="GeneID:1251994" /translation="MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAV NLQLNELIEHIATFALNYKIKYNEDNKLIAQIDEYLDDTFMLFSSYGINTQDLQKWRK SGNRLFRCFVNATRANPVSLSC" regulatory complement(528762..528767) /regulatory_class="ribosome_binding_site" /gene="ybaJ" /locus_tag="STM0474" /note="putative RBS for ybaJ; RegulonDB:STMS1H000818" gene complement(529250..532415) /gene="acrB" /locus_tag="STM0475" /db_xref="GeneID:1251995" CDS complement(529250..532399) /gene="acrB" /locus_tag="STM0475" /note="similar to E. coli acridine efflux pump (AAC73564.1); Blastp hit to AAC73564.1 (1049 aa), 94% identity in aa 1 - 1048" /codon_start=1 /transl_table=11 /product="aminoglycoside/multidrug transporter permease" /protein_id="NP_459470.1" /db_xref="GI:16763855" /db_xref="GeneID:1251995" /translation="MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVT ISATYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADI AQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAA NMKDPISRTSGVGDVQLFGSQYAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQ LGGTPPVKGQQLNASIIAQTRLTSTDEFGKILLKVNQDGSQVRLRDVAKIELGGENYD VIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVK ISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINT LTMFGMVLAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLS AVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEG KKGFFGWFNRLFDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPD EDQGVFLTMVQLPAGATQERTQKVLDEVTDYYLNKEKANVESVFAVNGFGFAGRGQNT GIAFVSLKDWADRPGEKNKVEAITQRATAAFSQIKDAMVFAFNLPAIVELGTATGFDF ELIDQAGLGHEKLTQARNQLFGEVAKYPDLLVGVRPNGLEDTPQFKIDIDQEKAQALG VSISDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDINDWYVRGSDGQM VPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMAMMEELASKLPSGIG YDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALL AATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLVEATLEAVRMRL RPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATVLAIFFVPVFFVVVR RRFSRKSEDIEHSHSTEHR" regulatory complement(532410..532415) /regulatory_class="ribosome_binding_site" /gene="acrB" /locus_tag="STM0475" /note="putative RBS for acrB; RegulonDB:STMS1H000819" gene complement(532422..533626) /gene="acrA" /locus_tag="STM0476" /db_xref="GeneID:1251996" CDS complement(532422..533615) /gene="acrA" /locus_tag="STM0476" /note="similar to E. coli acridine efflux pump (AAC73565.1); Blastp hit to AAC73565.1 (397 aa), 91% identity in aa 1 - 397" /codon_start=1 /transl_table=11 /product="efflux transporter periplasmic adaptor subunit" /protein_id="NP_459471.1" /db_xref="GI:16763856" /db_xref="GeneID:1251996" /translation="MNKNRGLTPLAVVLMLSGSLALTGCDDKQDQQGGQQMPEVGVVT LKTEPLQITTELPGRTVAYRIAEVRPQVSGIILKRNFVEGSDIEAGVSLYQIDPATYQ ATYDSAKGDLAKAQAAANIAELTVKRYQKLLGTQYISKQEYDQALADAQQATAAVVAA KAAVETARINLAYTKVTSPISGRIGKSSVTEGALVQNGQASALATVQQLDPIYVDVTQ SSNDFLRLKQELANGSLKQENGKAKVDLVTSDGIKFPQSGTLEFSDVTVDQTTGSITL RAIFPNPDHTLLPGMFVRARLQEGTKPTALLVPQQGVTRTPRGDATVLVVGADNKVET RQIVASQAIGDKWLVTDGLKAGDRVVVSGLQKVRPGAQVKVQEITADNKQQAASGDQP AQPRS" regulatory complement(533621..533626) /regulatory_class="ribosome_binding_site" /gene="acrA" /locus_tag="STM0476" /note="putative RBS for acrA; RegulonDB:STMS1H000820" gene 533757..534410 /gene="acrR" /locus_tag="STM0477" /db_xref="GeneID:1251997" CDS 533757..534410 /gene="acrR" /locus_tag="STM0477" /note="similar to E. coli acrAB operon repressor (AAC73566.1); Blastp hit to AAC73566.1 (215 aa), 87% identity in aa 1 - 214" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional repressor AcrR" /protein_id="NP_459472.1" /db_xref="GI:16763857" /db_xref="GeneID:1251997" /translation="MARKTKQQALETRQHILDVALRLFSQQGVSATSLAEIANAAGVT RGAIYWHFKNKSDLFSEIWELSESNIGELEIEYQAKFPDDPLSVLREILVHILEATVT EERRRLLMEIIFHKCEFVGEMVVVQQAQRSLCLESYDRIEQTLKHCINAKMLPENLLT RRAAILMRSFISGLMENWLFAPQSFDLKKEARAYVTILLEMYQLCPTLRASTVNGSP" gene 534529..537891 /gene="aefA" /locus_tag="STM0478" /db_xref="GeneID:1251998" CDS 534529..537891 /gene="aefA" /locus_tag="STM0478" /note="similar to E. coli putative alpha helix protein (AAC73567.1); Blastp hit to AAC73567.1 (1120 aa), 89% identity in aa 1 - 1117" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459473.1" /db_xref="GI:16763858" /db_xref="GeneID:1251998" /translation="MTMLQLYKRSQHFVFITISVLIILLSCQSLAFARGQTNGDLPSK ADVQNQLDTLNKQKDLSAQDKLVQQDLIDTLATLEKIERVKEETVQLRQKVAQAPEKM RQATAALNALSDVDNDDEMRKTLSALSLRQLELRVAQVLDDLQNSQNDLAAYNSQLVS LQTQPERVQNAMYTASQQIQQIRNRLDGNNVGEAALRPSQQVLLQAQQALLNAQIDQQ RKSLEGNTVLQDTLQKQRDYVTANSNRLEHQLQLLQEAVNSKRLTLTEKTAQEAISPD ETARIQANPLVKQELDINHQLSQRLIVATENGNMLMQQNIKVKNWLDRALQSERNIKE QIAVLKGSLLLSRILYQQQQTLPSADELEDMTNRIADLRLEQFEINQQRDALFQSDAF VDKLEEGHTSEVNDEVHDALLQVVEMRRELLDQLNKQLGNQLMMAINLQVNQQQLMSV SKNLKAILTQQIFWVNSNRPMDWDWLKAFPQTLKEQFSAMKITVNWQKAWPAVFIAFL AGLPLLLIAGLIRWRLKWLKAYQQKLAAAVGSLRNDSQLNTPKAILIDLIRALPVCLI ILALGLILLTMQLNISDLLWAFSKKLAMFWLVFGLCWKVLEKEGVAIRHFGMPAQLTS HWRRQIVRISLALLPLHFWSVVAELSPLNLMDDVLGQAVIFLNLLVITLLVWPLCRES WRDKESHGIRLVTVTILSIIPVALMVLTATGYFYTTLRLAGRWIETVYLVIIWNLLYQ TVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPQEEPTIALEQINQQTLRITMLLM LALFGVMFWAIWSDLITVFSYLDSITLWHYNGSEAGAAVVKSVTMGSLLFAIIAAMVA WALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYVIIAVGAMTVFGSLGVSWDKLQW LAAALSVGLGFGLQEIFGNFVSGLIILFERPVRIGDTVTIGTYSGTVSKIRIRATTIT DFDRKEVIIPNKAFVTERLINWSLSDTTTRLVIRLGVAYGSDLEKVKRVLLQAAMEHP KVMHDPEPAVFFTTFGASTLDHELRLYVRELRDRSHTVDELNRAIDRLCRENDINIAF NQLEVHLHNAKGDEVTEVKRDLNGGDLAPTAS" gene complement(537933..538874) /locus_tag="STM0479" /db_xref="GeneID:1251999" CDS complement(537933..538868) /locus_tag="STM0479" /note="similar to E. coli orf, hypothetical protein (AAC75365.1); Blastp hit to AAC75365.1 (296 aa), 49% identity in aa 7 - 296" /codon_start=1 /transl_table=11 /product="putative transposase" /protein_id="NP_459474.1" /db_xref="GI:16763859" /db_xref="GeneID:1251999" /translation="MERLPTTPHDAVFRQMLMQKEVARDFLAIHMPEDFLAICDLDSL KLESGSFVEDNLRSRYSDILYSLHTQHGPGYVYALIEHQSKSDRLMAFRLMRYAIAAM QRHLDAGHDTLPLVVPILFYHGPESPWPYSLNWHNMFVKPDMAKALYSRDFALVDLTT MPDNQLLQHRRIAMLELLQKHIRQRDLSELLDPLITLLTQDHLTDAQLSVLINYMLKA GNAAEPGALIRQLAQGAPQYKEQLMTIAEWLEEKGRTEGLQKGLQKGLEQGLAQGREA EARAIARKMLANGLEPGLIASVTGITPEELSTLSH" regulatory complement(538869..538874) /regulatory_class="ribosome_binding_site" /locus_tag="STM0479" /note="putative RBS for STM0479; RegulonDB:STMS1H000821" gene complement(538938..539116) /gene="ybaM" /locus_tag="STM0480" /db_xref="GeneID:1252000" CDS complement(538938..539105) /gene="ybaM" /locus_tag="STM0480" /note="similar to E. coli orf, hypothetical protein (AAC73568.1); Blastp hit to AAC73568.1 (53 aa), 80% identity in aa 1 - 49" /codon_start=1 /transl_table=11 /product="DUF2496 domain-containing protein" /protein_id="NP_459475.1" /db_xref="GI:16763860" /db_xref="GeneID:1252000" /translation="MSLENAPDEVKLAVDLIVLLEENRLPARTVLRALEIVMRDYENK LKSTEDDSQTE" regulatory complement(539111..539116) /regulatory_class="ribosome_binding_site" /gene="ybaM" /locus_tag="STM0480" /note="putative RBS for ybaM; RegulonDB:STMS1H000822" gene complement(539119..539634) /gene="priC" /locus_tag="STM0481" /db_xref="GeneID:1252001" CDS complement(539119..539634) /gene="priC" /locus_tag="STM0481" /note="similar to E. coli primosomal replication protein N'' (AAC73569.1); Blastp hit to AAC73569.1 (175 aa), 73% identity in aa 5 - 175" /codon_start=1 /transl_table=11 /product="primosomal replication protein N" /protein_id="NP_459476.1" /db_xref="GI:16763861" /db_xref="GeneID:1252001" /translation="MLLQTLEERLATLRQRCAPLAQHATLSARFDRHLFRTRSTLLQG YLEEAGANLVALRQAVKHEQLPQVAWLAEHLASQLEAISRETAAWSLRQWDAAAPGLG RWQRRRIQHQEFERRLLAMTQERKIRLAQATGLVEQQTLQKEVEIYEGRLARCRHALE KIENVLARLTR" gene 539715..540092 /gene="ybaN" /locus_tag="STM0482" /db_xref="GeneID:1252002" CDS 539715..540092 /gene="ybaN" /locus_tag="STM0482" /note="similar to E. coli putative gene 58 (AAC73570.1); Blastp hit to AAC73570.1 (125 aa), 84% identity in aa 1 - 124" /codon_start=1 /transl_table=11 /product="putative phage gene 58" /protein_id="NP_459477.1" /db_xref="GI:16763862" /db_xref="GeneID:1252002" /translation="MQRTILIIIGWLAVVLGTLGVVLPLLPTTPFILLAAWCFARSSP RFHAWLLYRSWFGGYLRHWQRYRAMPPGAKPRAIALILLTFGISLWLVNMMWVRVLLL VILACLLIFMWRIPVIDEKQQKR" gene 540232..540796 /gene="apt" /locus_tag="STM0483" /db_xref="GeneID:1252003" regulatory 540232..540237 /regulatory_class="ribosome_binding_site" /gene="apt" /locus_tag="STM0483" /note="putative RBS for apt; RegulonDB:STMS1H000823" CDS 540245..540796 /gene="apt" /locus_tag="STM0483" /EC_number="2.4.2.7" /note="similar to E. coli adenine phosphoribosyltransferase (AAC73571.1); Blastp hit to AAC73571.1 (183 aa), 95% identity in aa 1 - 183" /codon_start=1 /transl_table=11 /product="adenine phosphoribosyltransferase" /protein_id="NP_459478.1" /db_xref="GI:16763863" /db_xref="GeneID:1252003" /translation="MTATAQQLEFLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALS IELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIAETYEL EYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFIINLFD LGGEQRLEKQGITCYSLVPFPGH" gene 540910..542838 /gene="dnaX" /locus_tag="STM0484" /db_xref="GeneID:1252004" CDS 540910..542838 /gene="dnaX" /locus_tag="STM0484" /EC_number="2.7.7.7" /note="DNA elongation factor III; DNA polymerase III subunit TAU [contains: DNA polymerase III subunit gamma]. (SW:DP3X_SALTY)" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit gamma/tau" /protein_id="NP_459479.1" /db_xref="GI:16763864" /db_xref="GeneID:1252004" /translation="MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFS GTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVE DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQ KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDAL SLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGI EWEALLVEMLSLLHRIAMVQLSPAALGSDMAAIEQRMRELARTVPPGDLQLYYQTLLI GRKELPWAPDRRMGVEMTLLRALAFHPRMPLPEPETPRQSFAPVAPTAVMTPPQLQQP SAPAPQTSPAPLPASTSQVLAARNQLQRAQGVTKTKKSEPAAASRARPVNNSALERLA SVSERVQARPAPSALETAPVKKEAYRWKATTPVVQTKEVVATPKALKKALEHEKTPEL AAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEQNGNAVCLHLRSTQRHLNSSG AQQKLAQALSDLTGTTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQ TLRRFFDAELDEESIRPI" gene 542874..543213 /gene="ybaB" /locus_tag="STM0485" /db_xref="GeneID:1252005" regulatory 542874..542879 /regulatory_class="ribosome_binding_site" /gene="ybaB" /locus_tag="STM0485" /note="putative RBS for ybaB; RegulonDB:STMS1H000825" CDS 542884..543213 /gene="ybaB" /locus_tag="STM0485" /note="similar to E. coli orf, hypothetical protein (AAC73573.1); Blastp hit to AAC73573.1 (109 aa), 100% identity in aa 1 - 109" /codon_start=1 /transl_table=11 /product="YbaB/EbfC family nucleoid-associated protein" /protein_id="NP_459480.1" /db_xref="GI:16763865" /db_xref="GeneID:1252005" /translation="MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKV TINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLP PGFKMPF" gene 543199..543818 /gene="recR" /locus_tag="STM0486" /db_xref="GeneID:1252006" regulatory 543199..543204 /regulatory_class="ribosome_binding_site" /gene="ybaB" /locus_tag="STM0485" /note="putative RBS for recR; RegulonDB:STMS1H000826" CDS 543213..543818 /gene="recR" /locus_tag="STM0486" /note="similar to E. coli recombination and repair (AAC73574.1); Blastp hit to AAC73574.1 (201 aa), 96% identity in aa 1 - 201" /codon_start=1 /transl_table=11 /product="recombination protein RecR" /protein_id="NP_459481.1" /db_xref="GI:16763866" /db_xref="GeneID:1252006" /translation="MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLA QALTRAMSEIGHCADCRTFTEQDVCNICSNPRRQENGQICVVESPADIYAIEQTGQFS GRYFVLMGHLSPLDGIGPDDIGLDRLEQRLASEKISELILATNPTVEGEATANYIAEL CAEAGVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIIF" gene 543905..545803 /gene="htpG" /locus_tag="STM0487" /db_xref="GeneID:1252007" CDS 543905..545803 /gene="htpG" /locus_tag="STM0487" /note="similar to E. coli chaperone Hsp90, heat shock protein C 62.5 (AAC73575.1); Blastp hit to AAC73575.1 (624 aa), 94% identity in aa 1 - 624" /codon_start=1 /transl_table=11 /product="molecular chaperone HtpG" /protein_id="NP_459482.3" /db_xref="GI:1109557589" /db_xref="GeneID:1252007" /translation="MALLRSIHMKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELI SNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTIADNGVGMNRDEVIDHL GTIAKSGTKSFLESMGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGDKPENGV FWESAGEGEYTVADITKNDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEI EKREEKDGETVISWEKINKAQALWTRNKSEIKDDEYNEFYKHIAHDFTDPLTWSHNRV EGKQEYTSLLYIPSQAPWDLWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLID SNDLPLNVSREILQDSTVTRNLRSALTKRVLQMLEKLAKDDAEKYQTFWKQFGLVLKE GPAEDHANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAK NSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKAFQSVAKADESIEKLADEVDEN AKEAEKALEPFVERVKTLLGDRVKDVRLTHRLTDTPAIVTTDADEMSTQMAKLFAAAG QSVPEVKYIFELNPDHVLVKRTADTKDEAQFKEWVELLLDQALFAERGTLEDPNQFIR RMNQLLVS" gene 546029..546688 /gene="adk" /locus_tag="STM0488" /db_xref="GeneID:1252008" regulatory 546029..546034 /regulatory_class="ribosome_binding_site" /gene="adk" /locus_tag="STM0488" /note="putative RBS for adk; RegulonDB:STMS1H000827" CDS 546044..546688 /gene="adk" /locus_tag="STM0488" /EC_number="2.7.4.3" /note="adenylate kinase. (SW:KAD_SALTY)" /codon_start=1 /transl_table=11 /product="adenylate kinase" /protein_id="NP_459483.1" /db_xref="GI:16763868" /db_xref="GeneID:1252008" /translation="MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSE LGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIV VDYVLEFDVPDELIVDRIVGRRVHAASGRVYHVKFNPPKVEGKDDVTGEDLTTRKDDQ EETVRKRLVEYHQMTAPLIGYYQKEAEAGNTKYAKVDGTQAVADVRAALEKILG" gene 546908..547879 /gene="hemH" /locus_tag="STM0489" /db_xref="GeneID:1252009" regulatory 546908..546913 /regulatory_class="ribosome_binding_site" /gene="hemH" /locus_tag="STM0489" /note="putative RBS for hemH; RegulonDB:STMS1H000828" CDS 546917..547879 /gene="hemH" /locus_tag="STM0489" /EC_number="4.99.1.1" /note="ferrochelatase. (SW:HEMZ_SALTY)" /codon_start=1 /transl_table=11 /product="ferrochelatase" /protein_id="NP_459484.1" /db_xref="GI:16763869" /db_xref="GeneID:1252009" /translation="MRQTKTGILLANLGTPDAPTPEAVKRYLKQFLSDRRVVDTPRLL WWPLLRGVILPLRSPRVAKLYQSIWMDGGSPLMVYSREQQQALAARLPDTPVALGMSY GSPSLESAVDELLASDVDHIVVLPLYPQYSCSTVGAVWDELGRILARKRRIPGISFIR DYADDGAYIDALAKSARESFARHGEPDVLLLSYHGIPQRYADEGDDYPQRCRDTTREL VSALGLPPEKVMMTFQSRFGREPWLTPYTDETLKMLGEKGTGHIQVMCPGFAADCLET LEEIAEQNREIFLEAGGKKYAYIPALNATPEHIDMMLKLTAPYR" gene complement(547876..548859) /gene="aes" /locus_tag="STM0490" /db_xref="GeneID:1252010" CDS complement(547876..548847) /gene="aes" /locus_tag="STM0490" /EC_number="3.1.1.-" /note="similar to E. coli putative lipase (AAC73578.1); Blastp hit to AAC73578.1 (319 aa), 75% identity in aa 1 - 319" /codon_start=1 /transl_table=11 /product="acetylesterase" /protein_id="NP_459485.1" /db_xref="GI:16763870" /db_xref="GeneID:1252010" /translation="MKPENKIPVLTRLSDEMTAVVNFQQPGLPPWPADGDIETQRQYY LLERRFWNADAPSMTTRTCAVPTPYGDVTTRLYSPQPTSQATLYYLHGGGFILGNLDT HDRIMRLLARYTGCTVIGIDYSLSPQARYPQAIEETVAVCSYFSQHADEYSLNVEKIG FAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLYGLQDSVSRRLFGGAWDGLTR EDLDMYEKAYLRNDEDRESPWYCLFNNDLTRDVPPCFIASAEFDPLIDDSRLLHQTLQ AHQQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARMKTPR" regulatory complement(548854..548859) /regulatory_class="ribosome_binding_site" /gene="aes" /locus_tag="STM0490" /note="putative RBS for aes; RegulonDB:STMS1H000829" gene 549000..550304 /gene="gsk" /locus_tag="STM0491" /db_xref="GeneID:1252011" CDS 549000..550304 /gene="gsk" /locus_tag="STM0491" /EC_number="2.7.1.73" /note="similar to E. coli inosine-guanosine kinase (AAC73579.1); Blastp hit to AAC73579.1 (434 aa), 94% identity in aa 1 - 434" /codon_start=1 /transl_table=11 /product="inosine/guanosine kinase" /protein_id="NP_459486.1" /db_xref="GI:16763871" /db_xref="GeneID:1252011" /translation="MKFPGKRKSKHYFPVNARDPLLQQIQPEQETNASWVVGIDQTLV DIEAKVDDDFITRYGLSAGHSLVIEDEVAEKLYQELTRENLITHQFAGGTIGNTMHNY SVLADDRSVLLGVMCSNIEIGSYAYRYLCNTSSRTDLNYLQAVDGPIGRCFTLIGESG ERTFAISPGHMNQLRAESIPEAVIAGASALVLTSYLVRCKPGEPMPDATMKAIEYAKK HNVPVVMTLGTKFVIADNPQWWQAFLKENVSILAMNEEEAEALTGENDPLLAADKALD WVDLVLCTAGPIGLYMAGFTEEEAKRKTQHPLLPGAIAEFNQYEFSRAMRHKDCINPL RVYSHIAPYMGGPEKIMNTNGAGDGALAALLHDITANSYHRSNVPNSSKHKFTWLTYS SLAQVCKYANRVSYQVLNQHSPRLTRGLPEREDSLEESYWDR" gene complement(550353..552040) /gene="ybaL" /locus_tag="STM0492" /db_xref="GeneID:1252012" CDS complement(550353..552029) /gene="ybaL" /locus_tag="STM0492" /note="similar to E. coli putative transport protein (AAC73580.1); Blastp hit to AAC73580.1 (558 aa), 94% identity in aa 1 - 556" /codon_start=1 /transl_table=11 /product="Kef family K(+) transporter" /protein_id="NP_459487.1" /db_xref="GI:16763872" /db_xref="GeneID:1252012" /translation="MHHATPLITTIVGGLVLAFILGMIANKLRISPLVGYLLAGVLAG PFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAVAQIAVATLL GMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLLDSQRGQIAIGWLIVEDLV MVLTLVLLPAVAGMVEKGDVGIASLTVDMGITIGKVVAFIAIMMLVGRRLVPWIMARS AATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLP LRDAFAVLFFVSVGMLFDPLVLIQQPLAVLATLAIIVFGKSIAAFFLVRLFGHSPRTA LTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLEKYLA KTETLEEQTLEEAIEEEKQIPVDICNHALLVGFGRVGSLLGEKLLAAGIPLVVIETSR TRVDELRERGIRAVLGNAANEEIMNLAHLDCARWLLLTIPNGYEAGEIVASARGKSPD IEIIARAHYDDEVKYITERGANQVVMGEREIARAMLELLETPPAGEVVAS" regulatory complement(552035..552040) /regulatory_class="ribosome_binding_site" /gene="ybaL" /locus_tag="STM0492" /note="putative RBS for ybaL; RegulonDB:STMS1H000830" gene complement(552244..553464) /gene="fsr" /locus_tag="STM0493" /db_xref="GeneID:1252013" CDS complement(552244..553464) /gene="fsr" /locus_tag="STM0493" /note="similar to E. coli fosmidomycin resistance protein (AAC73581.1); Blastp hit to AAC73581.1 (406 aa), 93% identity in aa 1 - 405" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_459488.1" /db_xref="GI:16763873" /db_xref="GeneID:1252013" /translation="MAMSEPTQPLAGAPAAAAKARTSFGILGAISLSHLLNDMIQSLI LAIYPLLQAEFSLTFVQIGLITLTFQLASSLLQPVVGYWTDKYPMPWSLPVGMCFTLS GLVLLAMAGSFGGVLLAAALVGTGSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFG SSLGPLLAAVIIAPYGKGNVAWFVLAALLAIVVLAQISRWYAAQHRIAKGKPKAIIAN PLPRNKVVLAVSVLLLLIFSKYFYMASISSYYTFYLMQKFGLSIQNAQLHLFAFLFAV AAGTVIGGPVGDKIGRKYVIWGSILGVAPFTLVLPYATLYWTGILTVIIGFILASAFS AILVYAQELLPGRIGMVSGLFFGFAFGMGGLGAAVLGLIADHTSIYLVYKICAFLPLL GILTIFLPDNRHKA" gene 553624..555289 /gene="ushA" /locus_tag="STM0494" /db_xref="GeneID:1252014" regulatory 553624..553629 /regulatory_class="ribosome_binding_site" /gene="ushA" /locus_tag="STM0494" /note="putative RBS for ushA; RegulonDB:STMS1H000831" CDS 553637..555289 /gene="ushA" /locus_tag="STM0494" /EC_number="3.1.3.5" /EC_number="3.6.1.45" /note="silent protein USHA(0) precursor. (SW:USHA_SALTY)" /codon_start=1 /transl_table=11 /product="bifunctional UDP-sugar hydrolase/5'-nucleotidase" /protein_id="NP_459489.1" /db_xref="GI:16763874" /db_xref="GeneID:1252014" /translation="MKFLKRGVALALLAAFALTTQPAQAYEKDKTYKITILHTNDHHG HFWRSEYGEYGLAAQKTLVDSIRKEVAQEGGSVLLLSGGDINTGVPESDLQDAEPDFR GMNLIGYDAMAVGNHEFDNPLTVLRQQEKWAKFPFLYANIYQKSTGERLFKPWAIFTR QDIKIAVIGLTTDDTAKIGNPEYFTDIEFRKPAEEAKVVIQELNMNEKPDVIIATTHM GHYDNGDHGSNAPGDVEMARSLPAGSLAMIVGGHSQDPVCMASENKKQVNYVPGTPCA PDKQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVTWDNGKSERVL YTPEIAENPQMLSLLTPFQNKGKAQLEVKIGSVNGLLEGDRSKVRFVQTNMGRVILAA QIARTGADFGVMSGGGIRDSIEAGDITYKSVLKVQPFGNIVVYADMSGKEVVDYLTAV AQMKPDSGAYPQLANVSFVAKEGKLTDLKIKGEPVDPAKTYRMATLSFNATGGDGYPR IDNKPGYVNTGFIDAEVLKEFIQQNSPLDAAAFTPNGEVSWL" gene complement(555406..555895) /gene="ybaK" /locus_tag="STM0495" /db_xref="GeneID:1252015" CDS complement(555406..555885) /gene="ybaK" /locus_tag="STM0495" /note="protein YBAK. (SW:YBAK_SALTY)" /codon_start=1 /transl_table=11 /product="aminoacyl-tRNA deacylase" /protein_id="NP_459490.1" /db_xref="GI:16763875" /db_xref="GeneID:1252015" /translation="MTPAVKLLEKNKIPFNIHTYDHDPNETNFGDEVVRKLGLNADQV YKTLLVAVNGDMKQLAVAVTPVAGQLDLKKVAKALGAKKVDMADPMVAQRTTGYLVGG ISPLGQKKRLPTLIDAPARTFATIYVSGGKRGLDIELAADDLAAILGAKFADIARRD" regulatory complement(555890..555895) /regulatory_class="ribosome_binding_site" /gene="ybaK" /locus_tag="STM0495" /note="putative RBS for ybaK; RegulonDB:STMS1H000832" gene complement(556087..556893) /gene="ybaP" /locus_tag="STM0496" /db_xref="GeneID:1252016" CDS complement(556087..556881) /gene="ybaP" /locus_tag="STM0496" /note="similar to E. coli putative ligase (AAC73584.1); Blastp hit to AAC73584.1 (264 aa), 66% identity in aa 1 - 264" /codon_start=1 /transl_table=11 /product="polysaccharide biosynthesis protein GumN" /protein_id="NP_459491.1" /db_xref="GI:16763876" /db_xref="GeneID:1252016" /translation="MELLNQLKRLWRALRGTPNSWPAIDLSLPGGRHLHLVGSIHMGT RDMAPLPAKLVKKLHQADALVVEADISGNETPFSNLPKCPPLVERLSAGQLSALEKRV SELGMPLIHFDNQPLWQIAMVLQATQAQRLGLRPDYGIDYQLLQAAREMSLPVQELEG AKHQLELLCDLPDGGMALLDDTLTHWHTNARLLQVMIGWWLEQPPTSVGASLPRTFSQ PLYDVLMVKRNEAWRDALLALPPGRYVVAVGALHLYGEGNLPQILK" regulatory complement(556888..556893) /regulatory_class="ribosome_binding_site" /gene="ybaP" /locus_tag="STM0496" /note="putative RBS for ybaP; RegulonDB:STMS1H000833" gene complement(556967..557800) /locus_tag="STM0497" /db_xref="GeneID:1252017" CDS complement(556967..557794) /locus_tag="STM0497" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459492.1" /db_xref="GI:16763877" /db_xref="GeneID:1252017" /translation="MFRKAVTLLFLLSPAVSYAGLFDSTPELKCGNDNAVTAAKEWIY NEALGRLQQDYIKEPSTLFFDIPQTQYEQQLRAIPVQFSDVITQNPQAENANLRTCSA TVAMGIPQPLFKLMKDLPNTLFYISQGDGQVINNTVTWKQVNYNIQLADNNKDIVVTS VQKTDKLARSIYVMARMTVSGDSIIKKKNNSLIEIAAKKFESRDRELNQVWNSLPASA RTALKQEQRVWVTQKEQQCGKLSDAKSEAIPAEKRISIYKCQLEMTIARTAYLDGSE" regulatory complement(557795..557800) /regulatory_class="ribosome_binding_site" /locus_tag="STM0497" /note="putative RBS for STM0497; RegulonDB:STMS1H000834" gene complement(557948..560463) /gene="copA" /locus_tag="STM0498" /db_xref="GeneID:1252018" CDS complement(557948..560449) /gene="copA" /locus_tag="STM0498" /EC_number="3.6.3.4" /note="similar to E. coli putative ATPase (AAC73586.1); Blastp hit to AAC73586.1 (834 aa), 93% identity in aa 1 - 833" /codon_start=1 /transl_table=11 /product="Cu+ exporting ATPase" /protein_id="NP_459493.1" /db_xref="GI:16763878" /db_xref="GeneID:1252018" /translation="MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVELADVTVTEAHVT GTASADALIETIKQAGYGATLSHPKAKPLTESSIPSEALAAVPHELPVATADEESQQL LLSGMSCASCVTRVQHALQSVPGVTQARVNLAERTALVMGSASAADLVQAVEKAGYGA EAIEDDIKRRERQQETAIATMKRFRWQAIVALAVGIPVMVWGMIGDNMMVTDDNRSLW LAIGLITLAVMVFAGGHFYRNAWKSLLNGTATMDTLVALGTGVAWLYSMSVNLWPQWF PMEARHLYYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTEDGEKS VPLADVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGEPIPQQKGEGDSVHAGTV VQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVAIALFS AAIWYFFGPAPQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDAD ALQRASTLDTLVFDKTGTLTEGKPQVVAIKTFNGVEEAQALRLAAALEQGSSHPLAHA ILEKAGDDKLPQVNGFRTLRGLGVSGEAEGHQLLLGNQALLNEQHVATDDMTAEITAQ ASQGSTPVLLAIDGKAAALLAVRDPLRSDSIAALERLHNAGYRLVMLTGDNPTTANAI AKEAGIDEVIAGVLPDGKADAIKRLQSQGRQVAMVGDGINDAPALAQADVGIAMGGGS DVAIETAAITLMRHSLMGVADALAISRATLRNMKQNLLGAFIYNSIGIPVAAGILWPF TGTLLNPVVAGAAMALSSITVVSNANRLLRFKPKA" regulatory complement(560458..560463) /regulatory_class="ribosome_binding_site" /gene="copA" /locus_tag="STM0498" /note="putative RBS for copA; RegulonDB:STMS1H000835" gene 560548..560975 /gene="cueR" /locus_tag="STM0499" /db_xref="GeneID:1252019" regulatory 560548..560553 /regulatory_class="ribosome_binding_site" /gene="cueR" /locus_tag="STM0499" /note="putative RBS for cueR; RegulonDB:STMS1H000836" CDS 560559..560975 /gene="cueR" /locus_tag="STM0499" /note="similar to E. coli putative transcriptional regulator (AAC73589.1); Blastp hit to AAC73589.1 (135 aa), 91% identity in aa 1 - 134" /codon_start=1 /transl_table=11 /product="Cu(I)-responsive transcriptional regulator" /protein_id="NP_459494.1" /db_xref="GI:16763879" /db_xref="GeneID:1252019" /translation="MNISDVAKKTGLTSKAIRFYEEKGLVTPPLRSENGYRTYTQKHL NELTLLRQARQVGFNLEECGELVNLFNDPRRHSADVKKRTLEKVAEIERHISELQSMR DQLLALAESCPGDDSADCPIIDNLSGCCHHKAQKPR" gene complement(560976..561440) /gene="ybbJ" /locus_tag="STM0500" /db_xref="GeneID:1252020" CDS complement(560976..561428) /gene="ybbJ" /locus_tag="STM0500" /note="similar to E. coli orf, hypothetical protein (AAC73590.1); Blastp hit to AAC73590.1 (151 aa), 85% identity in aa 3 - 149" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459495.1" /db_xref="GI:16763880" /db_xref="GeneID:1252020" /translation="MIAMILVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGL TVWLLPLGWEWQGVLFAALTLLAAWLWWRWLARRVREQKPTDSRLNQRGQQLVGRRFM LDAALVNGRGHMRVGDSSWPVCADEDLRAGTHVEVIAVEGITLRIRAV" gene complement(561425..562356) /gene="ybbK" /locus_tag="STM0501" /db_xref="GeneID:1252021" CDS complement(561425..562342) /gene="ybbK" /locus_tag="STM0501" /note="similar to E. coli putative protease (AAC73591.1); Blastp hit to AAC73591.1 (305 aa), 95% identity in aa 1 - 302" /codon_start=1 /transl_table=11 /product="paraslipin" /protein_id="NP_459496.1" /db_xref="GI:16763881" /db_xref="GeneID:1252021" /translation="MLILIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPG LSLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVS NLELAIINLTMTNIRTVLGSMELDEMLSQRDSINTRLLHIVDEATNPWGIKVTRIEIR DVRPPAELISSMNAQMKAERTKRAYILEAEGVRQAEILKAEGEKQSQILKAEGERQSA FLQAEARERSAEAEARATQMVSEAIAAGDIQAINYFVAQKYTEALQQIGSANNSKVVM MPLDASSLMGAIAGISELVKDSASERKKA" regulatory complement(561435..561440) /regulatory_class="ribosome_binding_site" /gene="ybbJ" /locus_tag="STM0500" /note="putative RBS for ybbJ; RegulonDB:STMS1H000837" regulatory complement(562351..562356) /regulatory_class="ribosome_binding_site" /gene="ybbK" /locus_tag="STM0501" /note="putative RBS for ybbK; RegulonDB:STMS1H000838" gene 562474..563166 /gene="ybbL" /locus_tag="STM0502" /db_xref="GeneID:1252022" regulatory 562474..562479 /regulatory_class="ribosome_binding_site" /gene="ybbL" /locus_tag="STM0502" /note="putative RBS for ybbL; RegulonDB:STMS1H000839" CDS 562489..563166 /gene="ybbL" /locus_tag="STM0502" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73592.1); Blastp hit to AAC73592.1 (225 aa), 74% identity in aa 1 - 225" /codon_start=1 /transl_table=11 /product="iron ABC transporter ATP-binding protein FetA" /protein_id="NP_459497.1" /db_xref="GI:16763882" /db_xref="GeneID:1252022" /translation="MTERSMLLELKQVGYRTATTKIVNNISFTLQRGEFKLITGPSGC GKSTLLKMVASLISPDIGVILFEGQDITTLSPEAYRQQVSYCAQTPALFGDTVYDNLI FPWQIRHQRPQPTAFADDLARFELPETILQKPITALSGGEKQRIALIRNLQFLPKILL LDEITSALDEHNKRNVNDIIHRYVRDKQVAVLWVTHDKDEIQHADKVITLTPSAGEMQ EARYERA" gene 563140..563932 /gene="ybbM" /locus_tag="STM0503" /db_xref="GeneID:1252023" regulatory 563140..563145 /regulatory_class="ribosome_binding_site" /gene="ybbL" /locus_tag="STM0502" /note="putative RBS for ybbM; RegulonDB:STMS1H000840" CDS 563153..563932 /gene="ybbM" /locus_tag="STM0503" /note="similar to E. coli putative metal resistance protein (AAC73593.1); Blastp hit to AAC73593.1 (268 aa), 88% identity in aa 10 - 267" /codon_start=1 /transl_table=11 /product="iron export ABC transporter permease subunit FetB" /protein_id="NP_459498.1" /db_xref="GI:16763883" /db_xref="GeneID:1252023" /translation="MNEHNITNTSLALSMLLVVVAMLISHKEKLALEKDILWSVCRAV IQLIIVGYVLKYIFGVNHAALTLLMVLFICFNAAWNAQKRSKYIDKAFLSSFIAITVG AGLTLTVLVLTGSIEFAPMQVIPIAGMVAGNAMVAVGLCYNQLGLRFHSEQQQIQEKL SLGATPKMASAGLIRDSIRASLIPTIDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQ IMVTFMLLSTASLSTIIACYLTYRKFYNSRHQLVVMPLKKS" gene complement(564018..564872) /gene="ybbN" /locus_tag="STM0504" /db_xref="GeneID:1252024" CDS complement(564018..564872) /gene="ybbN" /locus_tag="STM0504" /note="similar to E. coli putative thioredoxin-like protein (AAC73594.1); Blastp hit to AAC73594.1 (296 aa), 94% identity in aa 13 - 296" /codon_start=1 /transl_table=11 /product="co-chaperone YbbN" /protein_id="NP_459499.1" /db_xref="GI:16763884" /db_xref="GeneID:1252024" /translation="MSVQNIVNINESNLQQTLEQSMTTPVLFYFWSERSQHCLQLTPV LESLAAQYHGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAI RALLDKVLPREEELKAQQAMQLMQEGNYIDALPLLKDAWQLSSQNSEIGLLLAEAQIA LNRSEEAEAVLKTIPLQDQDTRYQGLVAQIELLKQAADTPEIQQLQQQVADNPQDAAL ATQLALQLHQVGRNEEALELLFSHLRKDLTAAEGQTRKTFQEILAALGTGDALASKYR RQLYALLY" gene complement(564932..565713) /gene="ybbO" /locus_tag="STM0505" /db_xref="GeneID:1252025" CDS complement(564932..565702) /gene="ybbO" /locus_tag="STM0505" /EC_number="1.-.-.-" /note="similar to E. coli putative oxidoreductase (AAC73595.1); Blastp hit to AAC73595.1 (269 aa), 90% identity in aa 14 - 268" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_459500.1" /db_xref="GI:16763885" /db_xref="GeneID:1252025" /translation="MQKSVLITGCSSGIGLDSALELKRQGFQILAGCRKPDDVARMNS MGFTGVLIDLDSPESVDRAADEVIALTDNRLYGIFNNAGYGVYGPLSTISREQMEQQF SSNFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDAL RMELRHTGIKVSLIEPGPIRTRFTDNVNQTQRDKPVENPGIAARFTRDPDAVVAKVRH AFASDKPRLRYPVTLVTWAVMALKRILPGRMLDKILQS" regulatory complement(565708..565713) /regulatory_class="ribosome_binding_site" /gene="ybbO" /locus_tag="STM0505" /note="putative RBS for ybbO; RegulonDB:STMS1H000841" gene complement(565857..566488) /gene="tesA" /locus_tag="STM0506" /db_xref="GeneID:1252026" CDS complement(565857..566471) /gene="tesA" /locus_tag="STM0506" /EC_number="3.1.2.-" /note="similar to E. coli acyl-CoA thioesterase I; also functions as protease I (AAC73596.1); Blastp hit to AAC73596.1 (208 aa), 89% identity in aa 2 - 205" /codon_start=1 /transl_table=11 /product="multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1" /protein_id="NP_459501.1" /db_xref="GI:16763886" /db_xref="GeneID:1252026" /translation="MNFNTVFRWHLPFLFLILLTFRAAAADTLLILGDSLSAGYRMAA SAAWPSLLNDKWQNKTSVVNASISGDTSQQGLARLPALLQQHHPRWVVVELGGNDGLR GFAPAQTEQTLRKIIQTVKAADAQPLLMQIHLPANYGRRYNESFSAIYPKLAKEFDIP LLPFFMEEVYLKPQWMQDDGIHPNRDAQPFIADWMAKQLTPFLS" gene 566430..567128 /gene="ybbA" /locus_tag="STM0507" /db_xref="GeneID:1252027" regulatory 566430..566435 /regulatory_class="ribosome_binding_site" /gene="ybbA" /locus_tag="STM0507" /note="putative RBS for ybbA; RegulonDB:STMS1H000843" CDS 566442..567128 /gene="ybbA" /locus_tag="STM0507" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73597.1); Blastp hit to AAC73597.1 (228 aa), 92% identity in aa 1 - 228" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_459502.1" /db_xref="GI:16763887" /db_xref="GeneID:1252027" /translation="MPAENSVEVHRLRKSVGQGEHELSILTGVELVVKRGETIALIGE SGSGKSTLLAILAGLDDGSSGEVSLVGKPLHQMDEEARAQLRAQHVGFVFQSFMLIPT LNALENVELPALLRGENSGQSKAGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDPALAARCDRRLR LVNGQLQEEA" regulatory complement(566483..566488) /regulatory_class="ribosome_binding_site" /gene="tesA" /locus_tag="STM0506" /note="putative RBS for tesA; RegulonDB:STMS1H000842" gene 567114..569539 /gene="ybbP" /locus_tag="STM0508" /db_xref="GeneID:1252028" regulatory 567114..567119 /regulatory_class="ribosome_binding_site" /gene="ybbA" /locus_tag="STM0507" /note="putative RBS for ybbP; RegulonDB:STMS1H000844" CDS 567125..569539 /gene="ybbP" /locus_tag="STM0508" /note="similar to E. coli putative oxidoreductase (AAC73598.1); Blastp hit to AAC73598.1 (804 aa), 88% identity in aa 1 - 804" /codon_start=1 /transl_table=11 /product="ABC transporter permease" /protein_id="NP_459503.1" /db_xref="GI:16763888" /db_xref="GeneID:1252028" /translation="MIARWFWREWRSPSLIIVWLALSLAVACVLALGSISDRMEKGLS QQSREFMAGDRTLQSSREVPKAWLEEARKRGLNVGEQLTFATMTFAGDTPQLASVKAV DSVYPMYGELQTRPGGVKAQPGSVLLAPRLMALLNLKTGDTIDVGDVTLRIAGEVVQE PDSGFNPFQMAPRLMMNMADVAKTGAIQPGSRVMWRYKFGGTPQQLAGYESWLLPQLK PEHRWYGLEQDDGALGKSLERSQQFLLLSALLTLLLAVAAVAVAMSHYCRSRYDLVAI LKTLGAGRAQLRKLIIGQWLMVLGLSAVTGGAIGLLFENILLVLLKPVLPADLPPASL WPWLWALGAMTVISLLVGLRPYRLLLATQPLRVLRRDVVARVWPLKIYLPVACAVVVA LLVGLMGGSMLLWAVLAGAVILALLCGLVGWMLLNVLRGMTLTSLPLRLAVSRLLRQP WSTLSQLSAFSLSFMLLALLLVLRGDLLDRWQQQLPPESPNYFLINIASEQVAPLKAF LAEHQVIPQTFYPIVRARLTKINGNPTEGQQDESLNRELNLTWQDTRPAHNPLVAGHW PPKPGEVSMEEGLAKRLNVKLGDSVTFMGDTQAFSAKVTSLRQVDWESLRPNFFFIFP SGALDGQPQSWLTSFRWENGNGMLTQLNREFPTVSLLDIGAILKQVGQVLEQVSRALE VMVVLVTLCGMLLLLAQVQVGMRQRHQELVVWRTLGAGKKLLRTTLWCEFAMLGLVAG LVAAIGAETALAILQINVFDFPWEPDWRLWGALPFCGALLLSVCGGWLGVRLLKGKAL FRQFSG" gene 569718..570858 /locus_tag="STM0509" /db_xref="GeneID:1252029" regulatory 569718..569723 /regulatory_class="ribosome_binding_site" /locus_tag="STM0509" /note="putative RBS for STM0509; RegulonDB:STMS1H000845" CDS 569725..570858 /locus_tag="STM0509" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459504.1" /db_xref="GI:16763889" /db_xref="GeneID:1252029" /translation="MTIKITALAASIGAAVAFMPFATQAEITVLKQDPQAGNPLSRLN FTVGGSIRPQFQNMTGNDGANGYKRNGFDGGTRFRFAADYYLFDDISWISYYELGVNI PAVFDWDNHYAKGATDTTRRMLYTGFKSATWGTLTFGQQNSIYYDVVGVKTDIWDYDM IGQAPGNGINGDYDGSYRTRKSLKYKKSIGNVDLYASYLFSDDYNANNGLNYKRKGGG SLGADYHLTDDLTWGTAWNYTRAEMRGNGNKTYDQNIVGTALSWTPENWTIAAGGGWY QNFMTTKKVSVNDYFAGDAWGLEYFVGYAFPIGQYAVKAIQPYFMGDRIEYVNGRDYL RTDNGVGITFQLDYGFRVDYEHVFTSSTDNLGDMNLVRLRYDF" gene 571109..571945 /gene="sfbA" /locus_tag="STM0510" /db_xref="GeneID:1252030" regulatory 571109..571114 /regulatory_class="ribosome_binding_site" /gene="sfbA" /locus_tag="STM0510" /note="putative RBS for sfbA; RegulonDB:STMS1H000846" CDS 571115..571945 /gene="sfbA" /locus_tag="STM0510" /note="similar to E. coli putative lipoprotein (AAC73308.1); Blastp hit to AAC73308.1 (271 aa), 37% identity in aa 14 - 258" /codon_start=1 /transl_table=11 /product="metal ABC transporter substrate-binding protein" /protein_id="NP_459505.1" /db_xref="GI:16763890" /db_xref="GeneID:1252030" /translation="MGLRQSLRIAASTLLLACGLQFAHADSSPQTIVFGVAPGPYGDM VKQAIAPTLKEKGYKVVVREFSDYVQPNMALANGSIDANLFQHTLYFDKFTADKGLKL SKLIVVPTAGMGFYSRKINSLDALKKGDIITLSNDPTNLARGLRFLQSLGLITIKDNI DPTKASERDIASNPKGLVFKPLEAAQLPRTLDGVTGALVNGNFAVAAGLDLSSAIKQE HLDENLKNIIAVRSEDADKPFAKDIVEAVKSPAYRAVIDDPKNIYSAFQKPEWMTATP " gene 571975..572998 /gene="sfbB" /locus_tag="STM0511" /db_xref="GeneID:1252031" regulatory 571975..571980 /regulatory_class="ribosome_binding_site" /gene="sfbB" /locus_tag="STM0511" /note="putative RBS for sfbB; RegulonDB:STMS1H000847" CDS 571982..572998 /gene="sfbB" /locus_tag="STM0511" /note="similar to E. coli ATP-binding component of a transporter (AAC73310.1); Blastp hit to AAC73310.1 (343 aa), 45% identity in aa 1 - 340" /codon_start=1 /transl_table=11 /product="methionine ABC transporter ATP-binding protein" /protein_id="NP_459506.1" /db_xref="GI:16763891" /db_xref="GeneID:1252031" /translation="MIEIEKVCVDFTAGRGTPTRAVDDVSLHIAAGEIFGIVGTSGAG KSTLLRTLNALTRPSQGRVNVNGVEISALDGKALRQARQRIGMIFQHFNLMHTRTVAQ NVAFSLKAAGWERSKIAPRVAEILTLVGLADKANRFPVQLSGGQKQRVGIARAIANHP DVLLCDEPTSALDLETSATILALLRQINAQLGITIVLITHEMNVIKSICDRVAVMSGG KVVESGEVFDVFAHPQHAFTQQLVSHTLNLTLPERLREHLPGQLLKILFIGDSAEQPV LSEVAIKFGVAVNILHGKIEYIGERALGILVVQLTAPHNPTAVAAAVEHIRQRTAQVE VIRG" gene 572984..573650 /gene="sfbC" /locus_tag="STM0512" /db_xref="GeneID:1252032" regulatory 572984..572989 /regulatory_class="ribosome_binding_site" /gene="sfbC" /locus_tag="STM0512" /note="putative RBS for sfbC; RegulonDB:STMS1H000848" CDS 572991..573650 /gene="sfbC" /locus_tag="STM0512" /note="similar to E. coli putative transport system permease protein (AAC73309.1); Blastp hit to AAC73309.1 (217 aa), 44% identity in aa 15 - 217" /codon_start=1 /transl_table=11 /product="methionine ABC transporter permease" /protein_id="NP_459507.1" /db_xref="GI:16763892" /db_xref="GeneID:1252032" /translation="MDDLLPDLTLAFNETFQMLSISTVLAILGGLPLGFLIFVTDRHL FWQNRFIYLVASVLVNIIRSVPFVILLVLLLPLTQLLLGNTIGPIAASVPLSVAAIAF YARLVDSALREVDKGIIEAALAFGASPMRIICTVLLPEASAGLLRGLTITLVSLIGYS AMAGIVGGGGVGDLAIRYGYYRYETEVMVVTVVALIVLVQVVQMLGDWLAKRADKRDR H" gene complement(573689..574801) /gene="ybbB" /locus_tag="STM0513" /db_xref="GeneID:1252033" CDS complement(573689..574783) /gene="ybbB" /locus_tag="STM0513" /note="similar to E. coli putative capsule anchoring protein (AAC73605.1); Blastp hit to AAC73605.1 (364 aa), 78% identity in aa 1 - 364" /codon_start=1 /transl_table=11 /product="tRNA 2-selenouridine(34) synthase MnmH" /protein_id="NP_459508.1" /db_xref="GI:16763893" /db_xref="GeneID:1252033" /translation="MQDRQKAQDYRALLLADTPLIDVRAPIEFEQGAMPGAINLPLMM DDERAAVGTCYKRQGADAALALGHRLVCGDIRQQRLEAWKAAYQRFPNGYLCCARGGQ RSHIVQRWLQETGIDCPLIEGGYKALRQTAIQATWQLAQKPILLIGGCTGSGKTQLVR QQPNGVDLEGLARHRGSSFGRTLNPQLSQASFENKLAVELLKINARQTLKRWVLEDEG RTIGANHLPECLRERMAQAPIAVVEDPFALRLERLREEYFIRMHHDFTHAYGDEAGWQ AYSEYLHHGLFAIRRRLGLQRFAELTDTLDRALAEQLSSGSTDGHMAWLVPLLNEYYD PMYRYQLEKKAANIVFRGTWQDVANWLKAQ" regulatory complement(574796..574801) /regulatory_class="ribosome_binding_site" /gene="ybbB" /locus_tag="STM0513" /note="putative RBS for ybbB; RegulonDB:STMS1H000849" gene complement(574853..575795) /gene="ybbS" /locus_tag="STM0514" /db_xref="GeneID:1252034" CDS complement(574853..575779) /gene="ybbS" /locus_tag="STM0514" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC73606.1); Blastp hit to AAC73606.1 (308 aa), 86% identity in aa 1 - 307" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_459509.1" /db_xref="GI:16763894" /db_xref="GeneID:1252034" /translation="MFDPETLRTFISVAETGSFSKAAERLCKTTATISYRIKLLEENT GVGLFFRTTRSVSLTAAGSHLLSQAKDWLAWLDSMPDELRQVNDGVERQVNIVVNNLL YSPQAVASLLSWLNARYPFTQFHFSRQIYMGVWDSLLYEGFSLAIGVTGTEPLANTFM LDPLGSVQWRFVMSADHPLAHVSGPLTEAQLRRFPAINIEDSARTLTKRVAWRLPGQK EIIVPDMETKIAAHLAGVGIGFVPQPLCQTLIDKNELVSCTIPTMRPPSPLSLAWHKF GGGKAVEDIVKLFTQRQPEIAGFLSIFNTVRC" regulatory complement(575790..575795) /regulatory_class="ribosome_binding_site" /gene="ybbS" /locus_tag="STM0514" /note="putative RBS for ybbS; RegulonDB:STMS1H000850" gene 575994..576488 /gene="allA" /locus_tag="STM0515" /db_xref="GeneID:1252035" regulatory 575994..575999 /regulatory_class="ribosome_binding_site" /gene="allA" /locus_tag="STM0515" /note="putative RBS for allA; RegulonDB:STMS1H000851" CDS 576006..576488 /gene="allA" /locus_tag="STM0515" /note="similar to E. coli orf, hypothetical protein (AAC73607.1); Blastp hit to AAC73607.1 (160 aa), 85% identity in aa 1 - 160" /codon_start=1 /transl_table=11 /product="ureidoglycolate hydrolase" /protein_id="NP_459510.1" /db_xref="GI:16763895" /db_xref="GeneID:1252035" /translation="MKLEVLPLDQKTFSAYGDVIETQEREFFHINNGLVERYHDLAKV EVLEQDRTLISINRAQPAAMPIVVHELERHPLGTQAFVPMNGEAFVVIVALGDDKPDL STLRAFISNGRQGVNYHRNVWHHPLFAWQTVTDFLTVDRGGSDNCDVESIPTHELCFA " gene 576550..577385 /gene="allR" /locus_tag="STM0516" /db_xref="GeneID:1252036" regulatory 576550..576555 /regulatory_class="ribosome_binding_site" /gene="allR" /locus_tag="STM0516" /note="putative RBS for allR; RegulonDB:STMS1H000852" CDS 576567..577385 /gene="allR" /locus_tag="STM0516" /note="similar to E. coli putative regulator (AAC73608.1); Blastp hit to AAC73608.1 (271 aa), 91% identity in aa 1 - 268" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_459511.1" /db_xref="GI:16763896" /db_xref="GeneID:1252036" /translation="MTEVRRRGRPGQAEPTAQKGAQALERGIAILQYLERSGGSSSVS DISGSLDLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVFNVGSAYIHNRDVLSVA GPFMHRLMLLSGETVNVAIRNGNEAVLIGQKECKSMVRMCAPLGSRLPLHASGAGKAL LYPLTEEELVGIVVNTGLRRFTPTTLVDLPILLKNLEQAREQGYTVDQEEHVVGLNCI ASAIYDDAGSVVAAISISGPASRLTEDRFISQGELVRDTAKDISTALGLKPPVA" gene 577456..579251 /gene="gcl" /locus_tag="STM0517" /db_xref="GeneID:1252037" regulatory 577456..577461 /regulatory_class="ribosome_binding_site" /gene="gcl" /locus_tag="STM0517" /note="putative RBS for gcl; RegulonDB:STMS1H000853" CDS 577470..579251 /gene="gcl" /locus_tag="STM0517" /EC_number="4.1.1.47" /note="similar to E. coli glyoxylate carboligase (AAC73609.1); Blastp hit to AAC73609.1 (593 aa), 96% identity in aa 1 - 593" /codon_start=1 /transl_table=11 /product="glyoxylate carboligase" /protein_id="NP_459512.1" /db_xref="GI:16763897" /db_xref="GeneID:1252037" /translation="MAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIR HILARHVEGASHMAEGYTRAAAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITG QAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLV DLPFDVQVAEIEFDPDMYEPLPVYKPAASRVQIEKALEMLIQSERPVIVAGGGVINAD AAPLLQQFAELTNVPVIPTLMGWGCIPDDHPLMAGMVGLQTAHRYGNATLLASDMVFG IGNRFANRHTGSVEKYTQGRKIIHIDIEPTQIGRVLCPDLGIVSDAKAALTLLIDVAQ EMQKAGRLPCRKTWVDECQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTT IGLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPQRNVVAISGDFDFQ FLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYG VDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVILERVTNISMGSE LDNVTEFEEVADSAKDAPTETCFMKYE" gene 579254..580040 /gene="gip" /locus_tag="STM0518" /db_xref="GeneID:1252038" regulatory 579254..579259 /regulatory_class="ribosome_binding_site" /gene="gip" /locus_tag="STM0518" /note="putative RBS for gip; RegulonDB:STMS1H000854" CDS 579264..580040 /gene="gip" /locus_tag="STM0518" /note="similar to E. coli glyoxylate-induced protein (AAC73610.1); Blastp hit to AAC73610.1 (258 aa), 84% identity in aa 1 - 258" /codon_start=1 /transl_table=11 /product="hydroxypyruvate isomerase" /protein_id="NP_459513.1" /db_xref="GI:16763898" /db_xref="GeneID:1252038" /translation="MLRFSANLSMLFTEYDFLERFDKAALSGFRGVEFMFPYDNDIEV LKRKLRDNNLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALGNKKI NCLVGKTPSGFSATEIHDTLVENLRYAANMLAKEDILLLIEPINHFDMPGFHLTGTQQ ALALIKDIGSDNIKIQYDIYHMQRMEGELTQTMTAWADKIGHLQIADNPRRGEPGTGE INYDFIFNVIKQSGYDGWVGCEYKPLTTTEAGLSWINQYR" gene 580131..581019 /gene="glxR" /locus_tag="STM0519" /db_xref="GeneID:1252039" regulatory 580131..580136 /regulatory_class="ribosome_binding_site" /gene="glxR" /locus_tag="STM0519" /note="putative RBS for glxR; RegulonDB:STMS1H000855" CDS 580141..581019 /gene="glxR" /locus_tag="STM0519" /EC_number="1.1.1.60" /note="similar to E. coli putative oxidoreductase (AAC73611.1); Blastp hit to AAC73611.1 (292 aa), 91% identity in aa 1 - 292" /codon_start=1 /transl_table=11 /product="2-hydroxy-3-oxopropionate reductase" /protein_id="NP_459514.1" /db_xref="GI:16763899" /db_xref="GeneID:1252039" /translation="MKLGFIGLGIMGSPMAINLARAGHQLHVTTIGPVADELLSLGAV NVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKR FAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLVG GNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHG ERMINRTFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDH SAMVQALELMANHKLS" gene 581079..582332 /locus_tag="STM0520" /db_xref="GeneID:1252040" regulatory 581079..581084 /regulatory_class="ribosome_binding_site" /locus_tag="STM0520" /note="putative RBS for STM0520; RegulonDB:STMS1H000856" CDS 581085..582332 /locus_tag="STM0520" /note="similar to E. coli putative transport protein, cryptic, orf, joins former yjiZ and yjjL (AAC77312.1); Blastp hit to AAC77312.1 (453 aa), 24% identity in aa 40 - 439" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_459515.1" /db_xref="GI:16763900" /db_xref="GeneID:1252040" /translation="MSETKKSGIDYWKQIVVVMSLGWVAIWIYRTVLTPIYPEIQASL DNVSNAEIGAIASFYFFAYCSMQIPCGILVDKFGQKIMLMAGFTLFIIGTLCIAKANG LTMIYIGSLMAGGGCASFFSSAYSLSSANVPQARRALANAIINSGSAIGMGIGLIGSS ILVKNMSMAWQNVLYIVAAILVIMLCVFTLIIRGKAKSDSAQAEKQTQTVTEDEKRAP LFSGLLCSVYFLYFCTCYGYYLIVTWLPSYLQTERGFDGGAIGLASALVAVVGVPGAL FFSHLSDKFRNSKVKVILGLEIVAAAMLAFTVLSPNTTMLMVSLTLYGLLGKMAVDPI LISFVSEQASAKSLGRAFSLFNFFGMSSAVVAPTLTGFISDVTGSKEISFVISACLVV TGTLIFAVVTLYKKKATQRIASA" gene 582408..582662 /gene="ybbV" /locus_tag="STM0521" /db_xref="GeneID:1252041" CDS 582408..582662 /gene="ybbV" /locus_tag="STM0521" /note="similar to E. coli orf, hypothetical protein (AAC73612.1); Blastp hit to AAC73612.1 (92 aa), 56% identity in aa 39 - 91" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459516.1" /db_xref="GI:16763901" /db_xref="GeneID:1252041" /translation="MREKRDLWNIKESYTSSAVIAKTYYLRQKPNETGRHLTISPYGW DLYITCQITLWSAVFLYWGYQHLISCWPLLSAHYLLRRRW" gene 582569..583882 /gene="allP" /locus_tag="STM0522" /db_xref="GeneID:1252042" CDS 582569..583882 /gene="allP" /locus_tag="STM0522" /note="similar to E. coli putative transport protein (AAC73613.1); Blastp hit to AAC73613.1 (437 aa), 92% identity in aa 1 - 437" /codon_start=1 /transl_table=11 /product="putative NCS1 family, allantoin transport protein" /protein_id="NP_459517.1" /db_xref="GI:16763902" /db_xref="GeneID:1252042" /translation="MVGGFFILGLSTFNIMLAIIISALFIAAAMVMNGAAGSKYGVPF AMILRGSYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLAFLILIGKIWPGFLTLGGDF KLLGLSLPGLITFLIFWIINVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVG IGPILDYLPSGVQKAEHSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFRAQALGQT LGLIVAYILFAVASVCIIAGASIHYGMDTWNVLDIVQRWDSLFASFFAVLVILMTTIS TNATGNIIPAGYQIAALAPTKLNYKNGVMIASIISLLICPWKLMENQDSIYLFLDIIG GMLGPVIGVMLAHYFVVMRGKINLDELYTASGDYKYYDNGFNLTAFSVTLVAVILSLG GKFIPFMEPLSRVSWFVGVIVAFVAYALLKKRTGFENTGEKKLAG" gene 583949..585322 /gene="allB" /locus_tag="STM0523" /db_xref="GeneID:1252043" regulatory 583949..583954 /regulatory_class="ribosome_binding_site" /gene="allB" /locus_tag="STM0523" /note="putative RBS for allB; RegulonDB:STMS1H000857" CDS 583961..585322 /gene="allB" /locus_tag="STM0523" /EC_number="3.5.2.5" /note="similar to E. coli putative hydrolase (AAC73614.1); Blastp hit to AAC73614.1 (453 aa), 93% identity in aa 1 - 453" /codon_start=1 /transl_table=11 /product="allantoinase" /protein_id="NP_459518.1" /db_xref="GI:16763903" /db_xref="GeneID:1252043" /translation="MSFDLIIKNGTVILENEARVIDIAVQGGKIAAIGENLGEAKNVL DATGLIVSPGMVDAHTHISEPGRTHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDR ETIELKFDAAKGKLTIDAAQLGGLVSYNLDRLHELDEVGVVGFKCFVATCGDRGIDND FRDVNDWQFYKGAQKLGEMDQTVLVHCENALICDELGEEAKREGRVTAHDYVASRPVF TEVEAIRRVLYLAKAAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTD QFEEIGTLAKCSPPIRDQENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMQAWGG IAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLKHKGRIAPGKDADLVFIQ PDSSYVLKNEDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEHGFPVPPKGQFILK HQQ" gene 585370..586679 /gene="ybbY" /locus_tag="STM0524" /db_xref="GeneID:1252044" regulatory 585370..585375 /regulatory_class="ribosome_binding_site" /gene="ybbY" /locus_tag="STM0524" /note="putative RBS for ybbY; RegulonDB:STMS1H000858" CDS 585381..586679 /gene="ybbY" /locus_tag="STM0524" /note="similar to E. coli putative transport (AAC73615.1); Blastp hit to AAC73615.1 (435 aa), 79% identity in aa 8 - 435" /codon_start=1 /transl_table=11 /product="uracil/xanthine transporter" /protein_id="NP_459519.1" /db_xref="GI:16763904" /db_xref="GeneID:1252044" /translation="MFPVINRESVLSGFQWFFFIFCNTVVVPPTLLSAFHLPADNLLM LTQYAFLTTALACLVQAFCGHRRAIMEGPTGLWWGAILTITLGEASRGTPLNDIASSL SVGIAISAMVTIFIGISGLGHRLARLFTPAVMVFFMLLLGAQLTSIFFKGMLGLPFGI ADTSARIKLAPFGLAVAVMCFILAMIIFLQQRISRYALLVGTVVGWGLWRLCFPSSHL PPGELSWRWFPLGSHGTLMPGIIVTAVMTGLVNISNTYGAIRGTDIFYLHQGSGSSRY RRSFMISGLMTLVTVPFAVVPFSPFVSSIGLLTQTGDSSRKSFICGSALCLLVAIITP LTRLFCAIPLAISSAVMLVSYLPLLYSGLVFSQQITFTARNIYRLALPLFVGIFLMGL PPVYLQDLPLMIRPLLSNGLLVGILLAVLMENLIPWERIK" gene 586691..587850 /gene="glxK" /locus_tag="STM0525" /db_xref="GeneID:1252045" regulatory 586691..586696 /regulatory_class="ribosome_binding_site" /gene="glxK" /locus_tag="STM0525" /note="putative RBS for glxK; RegulonDB:STMS1H000859" CDS 586702..587850 /gene="glxK" /locus_tag="STM0525" /note="similar to E. coli orf, hypothetical protein (AAC73616.1); Blastp hit to AAC73616.1 (381 aa), 80% identity in aa 1 - 379" /codon_start=1 /transl_table=11 /product="glycerate kinase" /protein_id="NP_459520.1" /db_xref="GI:16763905" /db_xref="GeneID:1252045" /translation="MKIVIAPDSFKESLSADKCCQAIKAGFSTVFPDARYVCLPIADG GEGTVDAMVAATGGKRVSVDVSGPMGEKVNGFYGLTGDGKTAIIEMAAASGLMLVAPE ARNPLLASSFGTGELIRHALDAGIRHIILGIGGSATVDGGMGVAQALGVRFLDAQGTP LGAGGGNLSRLASIDLQGCDPRISECRIEVACDVDNPLVGPRGAAAVFGPQKGATPEM VETLENGLRNYARVLHALTGRDMSQIPGGGAAGGMGIAAIVFLEAEMKPGIEIVMQAV KLEEAVKEASLVITGEGRIDSQTAGGKAPIGVASVAKRHHVPVIGIAGVLGDGVEVVH RHGIDAVFSILPRLAPLPEVLANGEQNLYHSACNIARVIKLGQDIGTR" gene complement(587930..588727) /gene="ylbA" /locus_tag="STM0526" /db_xref="GeneID:1252046" CDS complement(587930..588715) /gene="ylbA" /locus_tag="STM0526" /note="similar to E. coli orf, hypothetical protein (AAC73617.1); Blastp hit to AAC73617.1 (261 aa), 92% identity in aa 1 - 261" /codon_start=1 /transl_table=11 /product="(S)-ureidoglycine aminohydrolase" /protein_id="NP_459521.1" /db_xref="GI:16763906" /db_xref="GeneID:1252046" /translation="MGYLNNVTGYRDDLLANRAIVKHGNYALLTPDGLVKNIIPGFEN CDVTILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVIAGNIEAKAEGKTFS LTQGGYLYCPPGEMMTFSNAQTEDSQLFLYKRRYTPVEGHAPWLVSGNASQLERIHYE GMEDVILLDFLPKELGFDMNMHILSFEPGASHGYIETHVQEHGAYILSGQGVYNLDNN WVPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVMI" regulatory complement(588722..588727) /regulatory_class="ribosome_binding_site" /gene="ylbA" /locus_tag="STM0526" /note="putative RBS for ylbA; RegulonDB:STMS1H000860" gene complement(588726..589973) /gene="allC" /locus_tag="STM0527" /db_xref="GeneID:1252047" CDS complement(588726..589961) /gene="allC" /locus_tag="STM0527" /EC_number="3.5.3.-" /note="similar to E. coli putative hydantoin utilization protein (AAC73618.1); Blastp hit to AAC73618.1 (411 aa), 88% identity in aa 1 - 411" /codon_start=1 /transl_table=11 /product="allantoate amidohydrolase" /protein_id="NP_459522.1" /db_xref="GI:16763907" /db_xref="GeneID:1252047" /translation="MIKHFRHAIEETLPWLSSIGADPTGGMTRLLYSPEWLETQQQFK KRMAESGLETRFDDVGNLYGRLCGTQFPEQVILSGSHIDTVVNGGNLDGQFGALAAWL ALDWLKATYGAPLRTVEVVSMAEEEGSRFPYVFWGSKNIFGLANPEEVRHIQDAKGTG FVDAMQACGFTLPAAPLAARTDIRAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTV TLNGESNHAGTTPMGYRRDTVHAFSRICSQSIEKAKQHGDPLVLTFGKVEPQPNTVNV VPGKTTFTIDCRHTDAAVLREFTEQLENDMRAICDEMDISIDIDLWMDEAPVPMNAEL VAALTRLCETEQLNYRIMHSGAGHDAQIFAPRVPTCMIFVPSINGISHNPAERTNIND LAEGVKTLALMLHQLAWQK" regulatory complement(589968..589973) /regulatory_class="ribosome_binding_site" /gene="allC" /locus_tag="STM0527" /note="putative RBS for allC; RegulonDB:STMS1H000861" gene complement(589983..591043) /gene="allD" /locus_tag="STM0528" /db_xref="GeneID:1252048" CDS complement(589983..591032) /gene="allD" /locus_tag="STM0528" /note="similar to E. coli putative malate dehydrogenase (AAC73619.1); Blastp hit to AAC73619.1 (349 aa), 86% identity in aa 1 - 349" /codon_start=1 /transl_table=11 /product="ureidoglycolate dehydrogenase" /protein_id="NP_459523.1" /db_xref="GI:16763908" /db_xref="GeneID:1252048" /translation="MKISRETLHQLIENKLYKAGLKREHAAIVADVLVYADARGIHSH GAVRVEYYAERISKGGTNREPTFRIENTGPCTAILHADNAAGQVAAKMGMEHAIEIAK KNGVAVVGISRMGHSGAISYFVRQAAREGLIGLSICQSDPMVVPFGGADIYYGTNPLA FAAPGEGDDIITFDMATTVQAWGKVLDARSRNESIPESWAVDKNGAPTHDPFAVNALL PAAGPKGYGLMMMIDILSGILLGLPFGRQVSSMYEDLHAGRNLGQLHLVINPAFFSSC ELFRKHISQTMQELNAVKPAPGFKQVYYPGQDQDIKQKNADMNGIDIVDDIYQYLISD ALYLKSYETKNPFAQ" regulatory complement(591038..591043) /regulatory_class="ribosome_binding_site" /gene="allD" /locus_tag="STM0528" /note="putative RBS for allD; RegulonDB:STMS1H000862" gene 591352..593027 /gene="fdrA" /locus_tag="STM0529" /db_xref="GeneID:1252049" regulatory 591352..591357 /regulatory_class="ribosome_binding_site" /gene="fdrA" /locus_tag="STM0529" /note="putative RBS for fdrA; RegulonDB:STMS1H000863" CDS 591363..593027 /gene="fdrA" /locus_tag="STM0529" /note="similar to E. coli involved in protein transport; multicopy suppressor of dominant negative ftsH mutants (AAC73620.1); Blastp hit to AAC73620.1 (555 aa), 82% identity in aa 1 - 555" /codon_start=1 /transl_table=11 /product="acyl-CoA synthetase FdrA" /protein_id="NP_459524.1" /db_xref="GI:16763909" /db_xref="GeneID:1252049" /translation="MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKS LLETTGFWHDDFHGATPNDICVAIRTEAVDDGITQVIVQQLEEALQQLAQGSSGSQSL IQVRRWESACQKLPEASLALVSVAGEYAAELAEQALDRSLNVMIFSDNVTLDDEIRLK RRARDKGLLVMGPDCGTAMIANTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGE GITHAIGLGGRDLSAEVGGISALTALEILSADEKSQVLAFVSKPPADAVRQHIIAAMK AAGKPVVALFLGFSSPVAREENVWFASTLDEAARLACLLSRVTSQRKEMVSTGGVIRG LYTGGTLAAEAAGLLAGYLGVAADTEHHHGMMLDADGHQIIDLGDDFYTVGRPHPMID PALRNQLIAGLGAQPQVRVLLVDVVIGFGATADPAASLIQAWQKACDARARDQPLFAI ATVTGTERDPQCRSQQIAALEDAGITVVDSLPEATLLAAELIRPTLSSTHPSAPRLLE AVAVINAGLRSFALDLQAAGMPVVHYQWAPVAGGNKKLARLLERLQ" gene 593026..594296 /gene="ylbE" /locus_tag="STM0530" /db_xref="GeneID:1252050" regulatory 593026..593031 /regulatory_class="ribosome_binding_site" /gene="ylbE" /locus_tag="STM0530" /note="putative RBS for ylbE; RegulonDB:STMS1H000864" CDS 593037..594296 /gene="ylbE" /locus_tag="STM0530" /note="similar to E. coli orf, hypothetical protein (AAC73621.1); Blastp hit to AAC73621.1 (333 aa), 94% identity in aa 1 - 332" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459525.1" /db_xref="GI:16763910" /db_xref="GeneID:1252050" /translation="MFTSVAQANAAVIEQIRRARPHWLDVKPASSLISVLNQGKTLLH AGPPMRWQEMTGPMKGACIGACLFEGWAKDEMSALALLEQGKVNFIPCHHVNAVGPMG GITSASMPMLVVENITDGNRAYCNLNEGIGKVMRFGAYGEDVQQRLRWMRDVLMPVLS AALGRLERGLDLTAMMAQGITMGDEFHQRNIASSALLMRTLAPHIARLEHDKQQIAEV MDFLSVTDQFFLNLAMAYCKAAMDAGAQIRAGSIVTAMTRNGDMFGIRVSGLGDRWFT APVNTPQGLFFTGFSQDQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAAK SVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQ IGAGTVRAPLACFEQALEALAESMGVS" gene 594308..595117 /gene="ylbF" /locus_tag="STM0531" /db_xref="GeneID:1252051" CDS 594308..595117 /gene="ylbF" /locus_tag="STM0531" /note="similar to E. coli putative carboxylase (AAC73622.1); Blastp hit to AAC73622.1 (271 aa), 65% identity in aa 1 - 269" /codon_start=1 /transl_table=11 /product="carboxylase" /protein_id="NP_459526.1" /db_xref="GI:16763911" /db_xref="GeneID:1252051" /translation="MKRIHPLMASRQSADYRQPWQMSGVWRRSINFVAKSGELLTLHR RGSGFSPGGWILRGGDFDALRDVLTDGEKPQSTAAGIQIGEFLLCEPERRCSLRVPRY LASPRLNATYMQRSEETGLFGPLTVAAAQPLCPELRQFCHCFQSALAGAATDWRLWLG KGPGLTPSHDDTLTGMLLAAWYFGAIDERAGRNFFAQSGSLDRATTLVSVSYLRYAAM GYFASPLLHFIHALRRDARTETAIDGLLALGHTSGADTLLGFWLGQQIVKG" gene 595110..596014 /gene="arcC" /locus_tag="STM0532" /db_xref="GeneID:1252052" regulatory 595110..595115 /regulatory_class="ribosome_binding_site" /gene="ylbF" /locus_tag="STM0531" /note="putative RBS for arcC; RegulonDB:STMS1H000865" CDS 595121..596014 /gene="arcC" /locus_tag="STM0532" /EC_number="2.7.2.2" /note="similar to E. coli putative carbamate kinase (AAC73623.1); Blastp hit to AAC73623.1 (297 aa), 86% identity in aa 1 - 297" /codon_start=1 /transl_table=11 /product="putative carbamate kinase" /protein_id="NP_459527.1" /db_xref="GI:16763912" /db_xref="GeneID:1252052" /translation="MKTLVVALGGNALLQRGEALTAENQYRNIADAVPALARLARSYR LAIVHGNGPQVGLLALQNLAWKAVEPYPLDVLVAESQGMIGYMLAQRLALEPDMPPVT AVLTRIKVSADDPAFLEPEKFIGPVYSPEEQMALEATYGWHMKRDGKYLRRVVASPAP RQIIESAAIELLLKEGHVVICSGGGGVPVAGEGEGVEAVIDKDLAAALLAEQIAADGL IILTDADAVYEHWGTPQQRAIRQASPDELAPFAKADGAMGPKVTAVSGYVKRCGKPAW IGALSRIDDTLAGRAGTCICL" gene complement(596055..597134) /gene="purK" /locus_tag="STM0533" /db_xref="GeneID:1252053" CDS complement(596055..597122) /gene="purK" /locus_tag="STM0533" /EC_number="4.1.1.21" /note="similar to E. coli phosphoribosylaminoimidazole carboxylase = AIR carboxylase, CO(2)-fixing subunit (AAC73624.1); Blastp hit to AAC73624.1 (355 aa), 88% identity in aa 1 - 353" /codon_start=1 /transl_table=11 /product="5-(carboxyamino)imidazole ribonucleotide synthase" /protein_id="NP_459528.1" /db_xref="GI:16763913" /db_xref="GeneID:1252053" /translation="MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPTAVPVQQS VITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLGLATAPWQLLTS TDEWSGIFDRLGELAIIKRRVGGYDGRGQWRLRADETGQLPDDCYGECIVERGIHFSG EVSLVGARAHDGSTVFYPLTHNLHQDGILRTSVAFPQANAEQQEQAESMLSAIMQALN YVGVMAMECFITPEGLLINELAPRVHNSGHWTQNGASISQFELHLRAITGLPLPAPVI NAPSVMINLIGSELNYDWLKLPLVHLHWYDKAVRPGRKVGHLNLTDSDTSRLSATLEA LSPLLPGEYASGIIWAQSKLK" gene complement(597119..597717) /gene="purE" /locus_tag="STM0534" /db_xref="GeneID:1252054" CDS complement(597119..597628) /gene="purE" /locus_tag="STM0534" /EC_number="4.1.1.21" /note="similar to E. coli phosphoribosylaminoimidazole carboxylase = AIR carboxylase, catalytic subunit (AAC73625.1); Blastp hit to AAC73625.1 (169 aa), 96% identity in aa 1 - 167" /codon_start=1 /transl_table=11 /product="5-(carboxyamino)imidazole ribonucleotide mutase" /protein_id="NP_459529.1" /db_xref="GI:16763914" /db_xref="GeneID:1252054" /translation="MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILDVPHHVEVVSA HRTPDKLFSFAETAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVD SLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILAQHDAELHQRIADWRKAQTDEVL ENPDPRGTL" regulatory complement(597129..597134) /regulatory_class="ribosome_binding_site" /gene="purE" /locus_tag="STM0534" /note="putative RBS for purK; RegulonDB:STMS1H000866" regulatory complement(597640..597645) /regulatory_class="ribosome_binding_site" /gene="purE" /locus_tag="STM0534" /note="putative RBS for purE; RegulonDB:STMS1H000867" regulatory complement(597693..597701) /regulatory_class="minus_10_signal" /gene="purE" /locus_tag="STM0534" /note="putative -10_signal for purE; RegulonDB:STMLTH004684" protein_bind complement(597697..597713) /gene="purE" /locus_tag="STM0534" /note="putative binding site for PurR, RegulonDB: STMS1H000351" /bound_moiety="PurR" regulatory complement(597709..597717) /regulatory_class="minus_35_signal" /gene="purE" /locus_tag="STM0534" /note="putative -35_signal for purE; RegulonDB:STMLTH004684" gene complement(597746..598468) /gene="lpxH" /locus_tag="STM0535" /db_xref="GeneID:1252055" CDS complement(597746..598468) /gene="lpxH" /locus_tag="STM0535" /note="similar to E. coli orf, hypothetical protein (AAC73626.1); Blastp hit to AAC73626.1 (240 aa), 84% identity in aa 1 - 239" /codon_start=1 /transl_table=11 /product="UDP-2,3-diacylglucosamine diphosphatase" /protein_id="NP_459530.1" /db_xref="GI:16763915" /db_xref="GeneID:1252055" /translation="MATLFIADLHLQTEEPAIVAGFLRFLAVEARQADALYILGDLFE AWIGDDDPNPLHREMAVAIKSLVDSGVPCFFIHGNRDFLIGKRFARESGMILLPQEKV LDLYGRNVLIMHGDTLCTDDAGYQAFRAKVHNPWVQRLFLTLPLFIRRRIAARMRAGS KAANSSKSLDIMDVNAQTVVAEMEKHRVQWLIHGHTHRPAVHELSANDQPAFRVVLGA WHHEGSMVKVTPDNVELIAFPL" gene complement(598471..598977) /gene="ppiB" /locus_tag="STM0536" /db_xref="GeneID:1252056" CDS complement(598471..598965) /gene="ppiB" /locus_tag="STM0536" /EC_number="5.2.1.8" /note="similar to E. coli peptidyl-prolyl cis-trans isomerase B (rotamase B) (AAC73627.1); Blastp hit to AAC73627.1 (164 aa), 97% identity in aa 1 - 164" /codon_start=1 /transl_table=11 /product="peptidylprolyl isomerase" /protein_id="NP_459531.1" /db_xref="GI:16763916" /db_xref="GeneID:1252056" /translation="MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRV INGFMIQGGGFEPGMKQKATKEAIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINV ADNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIENV TVSE" regulatory complement(598972..598977) /regulatory_class="ribosome_binding_site" /gene="ppiB" /locus_tag="STM0536" /note="putative RBS for ppiB; RegulonDB:STMS1H000868" gene 599126..600523 /gene="cysS" /locus_tag="STM0537" /db_xref="GeneID:1252057" regulatory 599126..599131 /regulatory_class="ribosome_binding_site" /gene="cysS" /locus_tag="STM0537" /note="putative RBS for cysS; RegulonDB:STMS1H000869" CDS 599138..600523 /gene="cysS" /locus_tag="STM0537" /EC_number="6.1.1.16" /note="similar to E. coli cysteine tRNA synthetase (AAC73628.1); Blastp hit to AAC73628.1 (461 aa), 94% identity in aa 1 - 461" /codon_start=1 /transl_table=11 /product="cysteine tRNA synthetase" /protein_id="NP_459532.1" /db_xref="GI:16763917" /db_xref="GeneID:1252057" /translation="MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTF VAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHQDFDA LNILRPDSEPRATHHIQEIIELTRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDL EQLQAGARVDVVDVKRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLG NHFDIHGGGSDLMFPHHENEIAQSTCAHDGEYVNYWMHSGMVMVDREKMSKSLGNFFT VRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDKSAAPAG GEAFEARFVEAMNDDFNTPEAYSVLFDMAREVNRLKGEDMTAANAMASHLRKISGVLG LLEQEPDVFLQSGAQADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLAEMGIILE DGPQGTTWRRK" gene complement(600567..601395) /locus_tag="STM0538" /db_xref="GeneID:1252058" CDS complement(600567..601391) /locus_tag="STM0538" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459533.1" /db_xref="GI:16763918" /db_xref="GeneID:1252058" /translation="MKRFAFALWLSAISLNAYADSANCHQKANTPESIAATMDQALQL KQQLNSQPDPVVILVRQGQDMSSRHLTWSHAGYAMRQPNGDWRVYHNLNTCGTAESAL YIQGLYEFLADDLVNQSIAVLRPRSDIATALQTLLHSAIKLNLFHSPRYNLIAWPFSG PYQNSNGWLLEVFARANDAQVWSRNDARRWLQLQGYQPSIVSAGTFERLGAKLFTPNV FTDDQPAELLRKGNVGLNSGDSVIRFIAHYSRAIPGCEHQNLGESVCVYLSPGAKK" gene complement(601388..601832) /locus_tag="STM0539" /db_xref="GeneID:1252059" CDS complement(601388..601825) /locus_tag="STM0539" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459534.1" /db_xref="GI:16763919" /db_xref="GeneID:1252059" /translation="MNKMTFAAAVICFSFSHASYSEEMSATGWYAASSAVVSVGSSAL VSGIILSPVLLPLNLSIGSVVENKKQKTALLTTKSPDNKDIKMQVPLHVVKEGNLKAG DKVTLEKTQEGTGAYLKKEGKVLAHMVNQDDAGLSSNQTVPAK" regulatory complement(601390..601395) /regulatory_class="ribosome_binding_site" /locus_tag="STM0539" /note="putative RBS for STM0538; RegulonDB:STMS1H000870" gene complement(601818..602363) /gene="ybcI" /locus_tag="STM0540" /db_xref="GeneID:1252060" CDS complement(601818..602363) /gene="ybcI" /locus_tag="STM0540" /note="similar to E. coli orf, hypothetical protein (AAC73629.1); Blastp hit to AAC73629.1 (173 aa), 86% identity in aa 1 - 169" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459535.1" /db_xref="GI:16763920" /db_xref="GeneID:1252060" /translation="MPTVITHAAVPLCFGAGLGLKVIPPRLLFAGVVLAMLPDADVLA FKFGVAYGNVFGHRGFTHSLLFAFVLPLLCVLAGRRWFRAGQVRCWLFLTVSLLSHSL LDSITTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSSYITPYGHQVILSELLWVWLP GSILVLFLWVLKTHIKRNQYE" regulatory complement(601827..601832) /regulatory_class="ribosome_binding_site" /locus_tag="STM0539" /note="putative RBS for STM0539; RegulonDB:STMS1H000871" gene complement(602491..602715) /gene="ybcJ" /locus_tag="STM0541" /db_xref="GeneID:1252061" CDS complement(602491..602703) /gene="ybcJ" /locus_tag="STM0541" /note="similar to E. coli orf, hypothetical protein (AAC73630.1); Blastp hit to AAC73630.1 (77 aa), 92% identity in aa 8 - 77" /codon_start=1 /transl_table=11 /product="ribosome-associated protein" /protein_id="NP_459536.1" /db_xref="GI:16763921" /db_xref="GeneID:1252061" /translation="MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIADGLVKVDGA VETRKRCKIVAGQTVSFEGQSVNVVA" gene complement(602705..603588) /gene="folD" /locus_tag="STM0542" /db_xref="GeneID:1252062" CDS complement(602705..603571) /gene="folD" /locus_tag="STM0542" /EC_number="1.5.1.5" /EC_number="3.5.4.9" /note="bifunctional; similar to E. coli 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase (AAC73631.1); Blastp hit to AAC73631.1 (288 aa), 95% identity in aa 1 - 286" /codon_start=1 /transl_table=11 /product="bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase" /protein_id="NP_459537.1" /db_xref="GI:16763922" /db_xref="GeneID:1252062" /translation="MAAKIIDGKTIAQQVRSEVAQKVQARVAAGLRAPGLAVVLVGSN PASQIYVASKRKACDEVGFVSRSYDLPETTSEAELLALIDTLNADNTIDGILVQLPLP AGIDNVKVLERIAPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTYGL NAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKDLRHHVEHADLLIVAVGKPGFIPG EWIKEGAIVIDVGINRLENGKVVGDVVFDEAAARASYITPVPGGVGPMTVATLIENTL QACIEYHDPQGK" regulatory complement(602710..602715) /regulatory_class="ribosome_binding_site" /gene="ybcJ" /locus_tag="STM0541" /note="putative RBS for ybcJ; RegulonDB:STMS1H000872" regulatory complement(603583..603588) /regulatory_class="ribosome_binding_site" /gene="folD" /locus_tag="STM0542" /note="putative RBS for folD; RegulonDB:STMS1H000873" gene 604107..604675 /gene="fimA" /locus_tag="STM0543" /db_xref="GeneID:1252063" regulatory 604107..604112 /regulatory_class="ribosome_binding_site" /gene="fimA" /locus_tag="STM0543" /note="putative RBS for fimA; RegulonDB:STMS1H000874" CDS 604118..604675 /gene="fimA" /locus_tag="STM0543" /note="type-1 fimbrial protein, a chain precursor (TYPE-1A PILIN). (SW:FM1A_SALTY)" /codon_start=1 /transl_table=11 /product="type-1 fimbrial protein subunit A" /protein_id="NP_459538.3" /db_xref="GI:308065939" /db_xref="GeneID:1252063" /translation="MKHKLMTSTIASLMFVAGAAVAADPTPVSVSGGTIHFEGKLVNA ACAVSTKSADQTVTLGQYRTASFTAIGNTTAQVPFSIVLNDCDPKVAANAAVAFSGQA DNTNPNLLAVSSADNSTTATGVGIEILDNTSSPLKPDGATFSAKQSLVEGTNTLRFTA RYKATAAATTPGQANADATFIMKYE" gene 604747..605284 /gene="fimI" /locus_tag="STM0544" /db_xref="GeneID:1252064" regulatory 604747..604752 /regulatory_class="ribosome_binding_site" /gene="fimI" /locus_tag="STM0544" /note="putative RBS for fimI; RegulonDB:STMS1H000875" CDS 604751..605284 /gene="fimI" /locus_tag="STM0544" /note="fimbrin-like protein FIMI. (SW:FIMI_SALTY)" /codon_start=1 /transl_table=11 /product="fimbrial protein FimI" /protein_id="NP_459539.1" /db_xref="GI:16763924" /db_xref="GeneID:1252064" /translation="MIRKGAALAGLVLMSPVIAQPVMVESGRVHLRGQLVNGGCAVAT ESQNLRVLMGQYRTNAFTGPGSFAPVSVPFSLRLISCSAEVWRHVGIAFAGVTPAEDP HVFLASGEGIGNAGIGLALFDDQQRQIIPNTLPLHYTPILTSEMTLHFTARYRAISEN MTPGRIHSEVWFTLVYP" gene 605313..606020 /gene="fimC" /locus_tag="STM0545" /db_xref="GeneID:1252065" regulatory 605313..605318 /regulatory_class="ribosome_binding_site" /gene="fimC" /locus_tag="STM0545" /note="putative RBS for fimC; RegulonDB:STMS1H000876" CDS 605328..606020 /gene="fimC" /locus_tag="STM0545" /note="chaperone protein FIMC precursor. (SW:FIMC_SALTY)" /codon_start=1 /transl_table=11 /product="fimbrial chaperone protein FimC" /protein_id="NP_459540.1" /db_xref="GI:16763925" /db_xref="GeneID:1252065" /translation="MLNSIKVGFIVLLTLFTSLNVQAAGGIALGATRVIYPSAAKQTS LAISNSDTQERYLVNSWIENNAGQKEKTFIVTPPLFVSEPKSENTLRIIYAGQPLPGD RESLFWMNVKAIPSVDKSHIEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSR VGNHLKITNPSAYYLTLVNISVGAKKIDNVMIAPKSDMQIPLPTGAQGNVTFQSVNDY GALTSATTASLG" gene 606039..608663 /gene="fimD" /locus_tag="STM0546" /db_xref="GeneID:1252066" regulatory 606039..606044 /regulatory_class="ribosome_binding_site" /gene="fimD" /locus_tag="STM0546" /note="putative RBS for fimD; RegulonDB:STMS1H000877" CDS 606051..608663 /gene="fimD" /locus_tag="STM0546" /note="outer membrane usher protein FIMD precursor. (SW:FIMD_SALTY)" /codon_start=1 /transl_table=11 /product="outer membrane usher protein" /protein_id="NP_459541.1" /db_xref="GI:16763926" /db_xref="GeneID:1252066" /translation="MKKTTWFAGRFPGYVSPLSSVALSVLAALCPLTSRGESYFNPAF LSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFVATQDIRFEAGAVGTGDKSGGLM PCFTPEWIKRLGVNTAAFPVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQAS LLNSARGYIPPEEWDEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGA WNYSKGDGYHSQRWNNIGTWVQRAIIPLKSELVMGDSNTGNDVFDSVGFRGARLYSSD NMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVSPGAFAITDLNPTSSSGDLE VTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAG LPAGLTAYGGTQLADRYRAVVVGAGRNLGDWGAVSVDVTHARSQLADDSTHQGQSLRF LYAKSLNNYGTNFQLLGYRYSTRGFYTLDDVAYRSMEGYDYEYDSDGRRHKVPVAQSY HNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQLGYASGWQGISYS LSWSWSESVGSSGADRILAFNMSVPFSVLTGRRYARDTILDRTYATFNANRNRDGDNS WQTGVGGTLLEGRNLSYSVTQGRSSSNGYSGSASASWQATYGTLGVGYNYDRDQHDYN WQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIENQTGVKTDWRGYAVMPYATV YRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLP FGAIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDSLKQ AITIASATCIRPAS" gene 608664..609685 /gene="fimH" /locus_tag="STM0547" /db_xref="GeneID:1252067" regulatory 608664..608669 /regulatory_class="ribosome_binding_site" /gene="fimH" /locus_tag="STM0547" /note="putative RBS for fimH; RegulonDB:STMS1H000878" CDS 608678..609685 /gene="fimH" /locus_tag="STM0547" /note="FIMH protein precursor. (SW:FIMH_SALTY)" /codon_start=1 /transl_table=11 /product="fimbrial adhesin FimH" /protein_id="NP_459542.1" /db_xref="GI:16763927" /db_xref="GeneID:1252067" /translation="MKIYSALLLAGTALFFTHPALATVCRNSNGTATDIFYDLSDVFT SGNNQPGQVVTLPEKSGWVGVNATCPAGTTVNYTYRSYVSELPVQSTEGNFKYLKLND YLLGAMSITDSVAGVFYPPRNYILMGVDYNVSQQKPFGVQDSKLVFKLKVIRPFINMV TIPRQTMFTVYVTTSTGDALSTPVYTISYSGKVEVPQNCEVNAGQVVEFDFGDIGASL FSQAGAGNRPQGVTPQTKTIAIKCTNVAAQAYLSMRLEAEKASGQAMVSDNPDLGFVV ANSNGTPLTPNNLSSKIPFHLDDNAAARVGIRAWPISVTGIKPAEGPFTARGYLRVDY D" gene 609684..610213 /gene="fimF" /locus_tag="STM0548" /db_xref="GeneID:1252068" regulatory 609684..609689 /regulatory_class="ribosome_binding_site" /gene="fimF" /locus_tag="STM0548" /note="putative RBS for fimF; RegulonDB:STMS1H000879" CDS 609695..610213 /gene="fimF" /locus_tag="STM0548" /note="fimbrial-like protein FIMF precursor. (SW:FIMF_SALTY)" /codon_start=1 /transl_table=11 /product="adhesin" /protein_id="NP_459543.1" /db_xref="GI:16763928" /db_xref="GeneID:1252068" /translation="MILRRVFIAIGCVLFSPLSQANSSLGEVNIELRGNVVDFTCAVV AGDSNKSVNLGTWPTKQLHAAGDATQPVAFSLKLEGCPPGSASITFSGTPAPGTALLA LADTAMAQKLAIEIRDGDQRRLPLEQASKAVDIDNNGNATLKFYANYIALADGVQPGL ANADATFLINYN" gene complement(610259..610904) /gene="fimZ" /locus_tag="STM0549" /db_xref="GeneID:1252069" CDS complement(610259..610891) /gene="fimZ" /locus_tag="STM0549" /note="putative transcriptional regulator (LuxR/UhpA family); fimbriae Z protein. (SW:FIMZ_SALTY)" /codon_start=1 /transl_table=11 /product="DNA-binding response regulator" /protein_id="NP_459544.1" /db_xref="GI:16763929" /db_xref="GeneID:1252069" /translation="MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEY LRTYPVDLVILDIELPGTDGFTLLKRIKSIQEHTRILFLSSKSEAFYAGRAIRAGANG FVSKRKDLNDIYNAVKMILSGYSFFPSETLNFISNTRTPKGGHHDMPLSNREVTVLRY LANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL" regulatory complement(610899..610904) /regulatory_class="ribosome_binding_site" /gene="fimZ" /locus_tag="STM0549" /note="putative RBS for fimZ; RegulonDB:STMS1H000880" gene complement(611495..612223) /gene="fimY" /locus_tag="STM0550" /db_xref="GeneID:1252070" CDS complement(611495..612217) /gene="fimY" /locus_tag="STM0550" /note="fimbriae Y protein. (SW:FIMY_SALTY)" /codon_start=1 /transl_table=11 /product="fimbriae Y protein" /protein_id="NP_459545.1" /db_xref="GI:16763930" /db_xref="GeneID:1252070" /translation="MRSVPRRERHRRLRNAKDCACRYHSPTPQIFDRLELLNQQLNYA LPVGIISQAIITTDNYLGYSLSHYLFSGKRTAAFRSLDDISLWIEKGSLRQLIVDMEA LPVSCIEALNQLRALSWQQSDIQIYLLVSDKTSAITQFIRMAGRFFVLSRRQNLASVR EALLSASKPRLSESFSRTDWLMIETLAQGASLKEIARQQSVPYHRVVYRLKQLITLLN LPHRQSFLRLIQQLNVTFHDIF" regulatory complement(612218..612223) /regulatory_class="ribosome_binding_site" /gene="fimY" /locus_tag="STM0550" /note="putative RBS for fimY; RegulonDB:STMS1H000881" gene complement(612236..612555) /locus_tag="STM0551" /db_xref="GeneID:1252071" CDS complement(612236..612547) /locus_tag="STM0551" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="NP_459546.1" /db_xref="GI:16763931" /db_xref="GeneID:1252071" /translation="MVAQGILLKERINPPHLASSPTRHSYLNSELLKSEPIVNLSTAQ LIGYEVLTQLPSEHDSEVFFQQLMLMEGIETSEQRSIAFYAGATMEQGYLWPAILPDI Y" regulatory complement(612550..612555) /regulatory_class="ribosome_binding_site" /locus_tag="STM0551" /note="putative RBS for STM0551; RegulonDB:STMS1H000882" gene complement(612709..613311) /gene="fimW" /locus_tag="STM0552" /db_xref="GeneID:1252072" CDS complement(612709..613305) /gene="fimW" /locus_tag="STM0552" /note="fimbriae W protein. (SW:FIMW_SALTY)" /codon_start=1 /transl_table=11 /product="helix-turn-helix transcriptional regulator" /protein_id="NP_459547.1" /db_xref="GI:16763932" /db_xref="GeneID:1252072" /translation="MLRIAIKEQNSHFEHGLKIIMTRLANQWQQKIDFLPPEEIDNAD IAFLALDDDWFSAGCYQIPMHTQHQLRAIICNKCDKEKLMFRPCLYMLPHIYREDDVE EITRKMILILHKRALRHSVPSGICHYCTTRHFSVTERHLLKLIASGYHLSETAALLSL SEEQTKSLRRSIMRKLHVKTEQQFLKYIRVNLHFLLSK" regulatory complement(613306..613311) /regulatory_class="ribosome_binding_site" /gene="fimW" /locus_tag="STM0552" /note="putative RBS for fimW; RegulonDB:STMS1H000883" gene 613570..613643 /gene="argU" /locus_tag="STM0553" /db_xref="GeneID:1252073" tRNA 613570..613643 /gene="argU" /locus_tag="STM0553" /product="tRNA-Arg" /db_xref="GeneID:1252073" gene complement(613596..613797) /locus_tag="STM0554" /db_xref="GeneID:1252074" CDS complement(613596..613784) /locus_tag="STM0554" /note="similar to E. coli prophage DLP12 integrase (AAC73638.1); Blastp hit to AAC73638.1 (387 aa), 80% identity in aa 345 - 386" /codon_start=1 /transl_table=11 /product="homology to integrase protein of phage" /protein_id="NP_459548.1" /db_xref="GI:16763933" /db_xref="GeneID:1252074" /translation="MIHRYAHLAPNHLTEHARKIDDIFGDDVPNMSHMENKEEIKKRN TLIYKWRALQDSNLRPTA" regulatory complement(613792..613797) /regulatory_class="ribosome_binding_site" /locus_tag="STM0554" /note="putative RBS for STM0554; RegulonDB:STMS1H000885" gene complement(613798..614421) /locus_tag="STM0555" /note="pseudogene; frameshift relative to E. coli IS3 putative transposase (GB:AAC75150.1)" /pseudo /db_xref="GeneID:2673757" gene complement(614807..616459) /locus_tag="STM0557" /db_xref="GeneID:1252077" CDS complement(614807..616459) /locus_tag="STM0557" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459550.1" /db_xref="GI:16763935" /db_xref="GeneID:1252077" /translation="MRRKMVNNRLKMVIAILIVFSLVYSIGFITPMNSDDYTYALREL SLSSVKMHYLGWSGRVVSDTISTSLLKFFSPHIYNAINSAALTLMVLCWTMIPATLTK SSPSPYVMIFLFFLYFVANPALGQTNFWLVGSANYLWTNMFIAIYILISIYLSNGKKS NLILFVYAISSIFAGCSNENTSLVVVLISVAYFFIMNRNKYLLIGVFGSAIGAGVLLL APGNLSRASTIQDWYNQPLAWRVLEHFSERLPSAMGAYWQVYIAFIILLISVVLSRNS SSKLMFGSFLFMLGAIAANVAFLASPAMPSRALNGALCFMILSISFVAHSAFTKFNKA SIYLSVTTYAMAFLYFIPSYILYYSSIKSISKQTEIREEIIDRAKHNKQDQAIIPDYY FPPVLHAGPSLDTFNSEAMSRYYGIDLKITAPGFFDYSRAFNFKPLNINAKICNNVYI KSLWIYKQQMGIKTFVIFEFNKNPADSLDENTAMFISFKTKDGKIINADVDKKTFQID GRWLSGRAINGIDSNELESITSGTWDVRTGARTNENITEIIK" gene complement(616440..617378) /gene="yfdH" /locus_tag="STM0558" /db_xref="GeneID:1252078" CDS complement(616440..617366) /gene="yfdH" /locus_tag="STM0558" /note="similar to E. coli putative glycan biosynthesis enzyme (AAC75410.1); Blastp hit to AAC75410.1 (306 aa), 88% identity in aa 1 - 306" /codon_start=1 /transl_table=11 /product="putative glycosyltransferase" /protein_id="NP_459551.1" /db_xref="GI:16763936" /db_xref="GeneID:1252078" /translation="MKISLVVPVFNEEATIPIFYKTVREFEELKPYEVEIVFINDGSK DATESIINKIAASDPLVIPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVI PHLIEKWQAGADMVLAKRSDRSTDGRMKRKTAEWFYKLHNKISNPKIEENVGDFRLMS REVVENIKQMPERNLFMKGVLSWVGGKTDVVEYARAERVAGDSKFNGWKLWNLALEGI TSFSTFPLRIWTYIGLFIAGMSFLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQL IGIGILGEYIGRIYIETKKRPKYIIKNEKKNG" gene complement(617363..617725) /gene="rfbI" /locus_tag="STM0559" /db_xref="GeneID:1252079" CDS complement(617363..617725) /gene="rfbI" /locus_tag="STM0559" /note="similar to E. coli orf, hypothetical protein (AAC75409.1); Blastp hit to AAC75409.1 (120 aa), 81% identity in aa 1 - 120" /codon_start=1 /transl_table=11 /product="translocase" /protein_id="NP_459552.1" /db_xref="GI:16763937" /db_xref="GeneID:1252079" /translation="MLKLFAKYTSIGVLNTLIHWGVFAFCVYGMHTHQALANFSGFVI AVSFSFYANARFTFNASTTTLRYMMYVGFMGTLSAVVGWMADKCSLPPLLTLVTFSAI SLICGFIYSKFIVFRDAK" regulatory complement(617373..617378) /regulatory_class="ribosome_binding_site" /gene="rfbI" /locus_tag="STM0559" /note="putative RBS for yfdH; RegulonDB:STMS1H000888" gene complement(618148..618393) /locus_tag="STM0560" /note="pseudogene; in-frame stop following codon 56" /pseudo /db_xref="GeneID:1252080" gene complement(618593..618927) /locus_tag="STM0561" /db_xref="GeneID:1252081" CDS complement(618593..618922) /locus_tag="STM0561" /EC_number="2.7.3.-" /note="similar to E. coli putative 2-component sensor protein (AAC73671.1); Blastp hit to AAC73671.1 (480 aa), 74% identity in aa 375 - 479" /codon_start=1 /transl_table=11 /product="ATP-binding protein" /protein_id="NP_459553.1" /db_xref="GI:16763938" /db_xref="GeneID:1252081" /translation="MLRRAISNLLSNTMRYTPPGKTITLRIKEADDQIHIIVENPGTP IAPEHLPLLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVTAHRGKISVTSDTRATRFIL TFPKHLR" regulatory complement(618922..618927) /regulatory_class="ribosome_binding_site" /locus_tag="STM0561" /note="putative RBS for STM0561; RegulonDB:STMS1H000890" gene 619026..619210 /locus_tag="STM0562" /db_xref="GeneID:2673759" regulatory 619026..619031 /regulatory_class="ribosome_binding_site" /locus_tag="STM0562" /note="putative RBS for STM0562; RegulonDB:STMS1H000891" CDS 619031..619210 /locus_tag="STM0562" /note="similar to E. coli putative inner membrane component for iron transport (AAC73676.1); Blastp hit to AAC73676.1 (1047 aa), 82% identity in aa 981 - 1044" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_447013.1" /db_xref="GI:1109557591" /db_xref="GeneID:2673759" /translation="MRPKAMTVAVIIAGLLPVLWGTGAGSEVMSRITAPLLSLFIIPA AYKLMWLRRHRRLAA" gene complement(619261..620126) /locus_tag="STM0563" /db_xref="GeneID:1252083" CDS complement(619261..620115) /locus_tag="STM0563" /note="similar to E. coli putative ARAC-type regulatory protein (AAC73408.1); Blastp hit to AAC73408.1 (284 aa), 71% identity in aa 1 - 282" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="NP_459555.1" /db_xref="GI:16763940" /db_xref="GeneID:1252083" /translation="MDALSRLLTLNAPQGSIDKNCPLGGDWQLPHAAGELSVIRWHTV TQGEAQLEMPTGDAMTLTPGKVVILPQNSAHRLRQSGESPTHIVCGSLRLHTTSRYFL TALPEVLCLAPPPHSPASIWINATILLLQQESERHLPGADVLYSQQCATLFTLAVRDW LSQAGTAKSVLNLLLHPRLGRVILHMLETPAHPWTVETLAQRVHMSRASFAQLFRDVS ATTPLAVLTTLRLQIAAQTLSREVLPVMVIAESVGYASESSFHKAFVREFGCTPGEYR KRVSALGR" regulatory complement(620121..620126) /regulatory_class="ribosome_binding_site" /locus_tag="STM0563" /note="putative RBS for STM0563; RegulonDB:STMS1H000892" gene 620318..621656 /locus_tag="STM0564" /db_xref="GeneID:1252084" regulatory 620318..620323 /regulatory_class="ribosome_binding_site" /locus_tag="STM0564" /note="putative RBS for STM0564; RegulonDB:STMS1H000893" CDS 620331..621656 /locus_tag="STM0564" /note="similar to E. coli putative oxidoreductase (AAC73407.1); Blastp hit to AAC73407.1 (450 aa), 74% identity in aa 10 - 450" /codon_start=1 /transl_table=11 /product="pyridine nucleotide-disulfide oxidoreductase" /protein_id="NP_459556.1" /db_xref="GI:16763941" /db_xref="GeneID:1252084" /translation="MTQYQALIIGFGKAGKTLAATLAKTGWRVAIIEQSASMFGGTCI NIGCIPTKTLVHDAEREGDFSVAMQRKAAVVNFLRDKNFHNLADLDNVDVIEGRAEFI DNHTLRVFQADGERVLRGEKIFINTGAESVIPAITGLTTTAGVFDSTGLLSLSQRPAR LGILGGGYIGLEFASMFANFGTKVTIFEAAPQFLPREDRDIAQAITRILQEKGVELIL NANVQAVSSKEGAVQVETPEGAHLVDALLVASGRKPATAGLQLQNAGVAVNERGGIIV DDYLRTTADNIWAMGDVTGGLQFTYISLDDFRIVRDGLLGDGKRSTRDRQNVPYSVFM TPPLSRVGLTEEQARASGATVQVVTLPVAAIPRARVMNDTRGVLKAVVDVNTQRIVGV SLLCVDSHEMINIVKTVMDADLPYTVLRDQIFTHPTMSESLNDLFSLIK" gene 621801..622049 /locus_tag="STM0565" /db_xref="GeneID:1252085" regulatory 621801..621806 /regulatory_class="ribosome_binding_site" /locus_tag="STM0565" /note="putative RBS for STM0565; RegulonDB:STMS1H000894" CDS 621813..622049 /locus_tag="STM0565" /note="similar to E. coli orf, hypothetical protein (AAC73406.1); Blastp hit to AAC73406.1 (83 aa), 53% identity in aa 6 - 83" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459557.1" /db_xref="GI:16763942" /db_xref="GeneID:1252085" /translation="MLKVTTLIASLLAAPLAFSASAQPLTDVEYISVSAVSATPSMLE DAIARLAQSKQASSWKITSMRIDNTGYATAILYK" gene 622048..622622 /locus_tag="STM0566" /db_xref="GeneID:1252086" regulatory 622048..622053 /regulatory_class="ribosome_binding_site" /locus_tag="STM0566" /note="putative RBS for STM0566; RegulonDB:STMS1H000895" CDS 622062..622622 /locus_tag="STM0566" /note="similar to E. coli orf, hypothetical protein (AAC73404.1); Blastp hit to AAC73404.1 (200 aa), 84% identity in aa 4 - 188" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459558.1" /db_xref="GI:16763943" /db_xref="GeneID:1252086" /translation="MDKYLRLLSQGDRLGLTLIRLSIAIVFIWIGLLKFVPYEADSIT PFVANSPFMSFFYEHPEEYRQHLTHEGELKPEERAWQTANNTYAFSDGLGVVELIIAA LVLANPVSRWLGLAGGVLAFLTPFVTLSFLITTPEVWVMPLGDAHYGFPYLSGAGRLV LKDTLMLAGAVMIMADSARSLLLQRQ" gene complement(622701..623882) /locus_tag="STM0567" /db_xref="GeneID:1252087" CDS complement(622701..623876) /locus_tag="STM0567" /codon_start=1 /transl_table=11 /product="DNA repair protein" /protein_id="NP_459559.1" /db_xref="GI:16763944" /db_xref="GeneID:1252087" /translation="MNKIIKRLEIIKSAIELEDEEIIRQQLIYLKNEPQDAVISAIAQ AIEARRFSDAMQEIAAWLQAQRALSTWQDPSIAASKLELKALEAQLRDLIDKRNARVQ ILDDFNDLYHLRLGPLMSRILELRKQLAVSMQRKQEAEIKRREKDYQSCLQFISQAVD QLATLKQQWTGLNAASREAVGIRQRIQQQTELITALLAEIRELEADFSHQDDSAFRQA QENAEQDYHQYREQQQEAQFRYARDQRLSADERSELKRLWRQASRLCHPDVVADELKE KAHQMMVQLNQARQNADLAAIRALLTQLQSGLEPMMASDRLNNLEHLRHKIRQLRTQI DALLKEITQLETENAWRLASSVADKEAYFSEQERALTEIRNTLEAQVQQVEQELLSG" regulatory complement(623877..623882) /regulatory_class="ribosome_binding_site" /locus_tag="STM0567" /note="putative RBS for STM0567; RegulonDB:STMS1H000896" gene 624190..625596 /gene="pheP" /locus_tag="STM0568" /db_xref="GeneID:1252088" regulatory 624190..624195 /regulatory_class="ribosome_binding_site" /gene="pheP" /locus_tag="STM0568" /note="putative RBS for pheP; RegulonDB:STMS1H000897" CDS 624202..625596 /gene="pheP" /locus_tag="STM0568" /note="similar to E. coli phenylalanine-specific transport system (AAC73677.1); Blastp hit to AAC73677.1 (458 aa), 92% identity in aa 1 - 458" /codon_start=1 /transl_table=11 /product="phenylalanine transporter" /protein_id="NP_459560.1" /db_xref="GI:16763945" /db_xref="GeneID:1252088" /translation="MKNASTASGASVSDAASKNEPTLQRGLQNRHIQLIALGGAIGTG LFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAWKYWGPF AGFLSGWNYWVMFVLVGMAELTAAGIYMQYWLPDVPTWVWAAAFFIIINAVNLVNVRL YGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEHASIDNLWRYNGFFATGWHGLLLS LAVIMFSFGGLELIGITAAEARDPQKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVE VKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPK FLTRVSHRGVPVNSLILSGAITSLVVLINYLLPQKAFSLLMALVVATLLLNWIMICLA HLRFRAAMRRKGRETQFKALFYPAGNYLCIAFLALILVLMCTMDDMRLSAILLPVWIV FLFIAFTVLRRKAH" gene complement(625638..626896) /gene="ybdG" /locus_tag="STM0569" /db_xref="GeneID:1252089" CDS complement(625638..626885) /gene="ybdG" /locus_tag="STM0569" /note="similar to E. coli putative transport (AAC73678.1); Blastp hit to AAC73678.1 (415 aa), 88% identity in aa 1 - 414" /codon_start=1 /transl_table=11 /product="miniconductance mechanosensitive channel" /protein_id="NP_459561.1" /db_xref="GI:16763946" /db_xref="GeneID:1252089" /translation="MQELISRVEDLAGIEMNHTTSLVVIFGIIFLTAVVVHIILHWIV LRAFEKRASASSRLWLQIITQNKLFHRLAFTLQGIIVNIQAALWLQKGSEAADILTTC AQLWIMTYALLSLFSLLDVIFNLSQKWPAASQLPLKGIFQGIKLIGAIIVGILMISLL IGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGA VIDIGLTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSINIDATSIHF LDDDEKQRLLTAQLLKPYLTSRHQEIDEWNKQLDAPESALNHRRMTNIGTFRAYLNEY LRHHPRIRKDMTLMVRQLAPDDHGLPIEIYAFTNTVVWLEYESIQADIFDHIFAVVEE FGLRIHQTPTGSDIRALSGTLRH" regulatory complement(626891..626896) /regulatory_class="ribosome_binding_site" /gene="ybdG" /locus_tag="STM0569" /note="putative RBS for ybdG; RegulonDB:STMS1H000898" gene 627189..629166 /gene="apeE" /locus_tag="STM0570" /db_xref="GeneID:1252090" regulatory 627189..627194 /regulatory_class="ribosome_binding_site" /gene="apeE" /locus_tag="STM0570" /note="putative RBS for apeE; RegulonDB:STMS1H000899" CDS 627196..629166 /gene="apeE" /locus_tag="STM0570" /note="outer membrane esterase (gi|2896133)" /codon_start=1 /transl_table=11 /product="autotransporter outer membrane beta-barrel domain-containing protein" /protein_id="NP_459562.1" /db_xref="GI:16763947" /db_xref="GeneID:1252090" /translation="MTQKRTLLKYGILSLALAAPLSACAFDSLTVIGDSLSDTGNNGR WTWDSGQNKLYDEQLAERYGLELSPSSNGGSNYAAGGATATPELNPQDNTADQVRQWL AKTGGKADHNGLYIHWVGGNDLAAAIAQPTMAQQIAGNSATSAAAQVGLLLDAGAGLV VVPNVPDISATPMLLEAVITAGLGAAAPPALKAALDALAEGATPDFASRQQAIRKALL AAAATVSSNPFIQQLLVEQLLAGYEAAAGQASALTDYYNQMEEKGLEQHGGNIARADI NGLFKEILANPQAFGLTNTVGMACPPGVSASACSSAMPGFNASQDYLFADHLHPGPQV HTIIAQYIQSIIAAPVQATYLNQSVQSMAQGSRTTLDSRYQQLRQGENPVGSLGMFGG YSGGYQRYDNNEADGNGNHNNLTVGVDYQLNEQVLLGGLIAGSLDKQHPDDNYRYDAR GFQAAVFSHLRAGQAWLDSDLHFLSAKFSNIQRSITLGALRRVEEGETNGRLWGARLT SGYDFVMVPWLTTGPMLQYAWDYSHVNGYSEKLNTSTSMRFGDQNAHSQVGSAGWRLD LRHSIIHSWAQINYRRQFGDDTYVANGGLKSTALTFSRDGKTQDKNWVDIAIGADFPL SATVSAFAGLSQTAGLSDGNQTRYNVGFSARF" gene 629328..632062 /locus_tag="STM0571" /db_xref="GeneID:1252091" regulatory 629328..629333 /regulatory_class="ribosome_binding_site" /locus_tag="STM0571" /note="putative RBS for STM0571; RegulonDB:STMS1H000900" CDS 629333..632062 /locus_tag="STM0571" /note="unknown (gi|2896134)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459563.1" /db_xref="GI:16763948" /db_xref="GeneID:1252091" /translation="MNKESIFRQLELRLAGCSLTADALGAFSAMAIADSLRQKRSIIS HHLNNLHREQRVVKVNSRPVLFLPVEALRRHHRLAVRQGDYASIQALCAERQDSLELL IGAQGSLQESLRQCKAAISYPGAGLPLLLRGPTGTGKSFLARQLWQYAIEQGILPPEA PFTVFNCAEYANNPELLTSKLFGHAKGAFTGADRAVSGLIETSNGGVLFIDEVHRLPP EGQEKLFHFMDNGTWRRLGESSDERSATVRLIFASTEDLEKHFLATFIRRIPVIVKIL PIAERGQYERLAFIHHFFRREAQRLHHDLSLDSEIISQLMQETLEGNVGGLENLIRNI CASAWTFGQRDDGVLEVKAGQLPDRLLMEVPFTVPQTAERIMIYREGGVFPRVSGQHQ EYLRLTENICGLCEELAQENISARTFDKLVYQNLTLYLDALMNKESPRARQDKRLRFI EDVGKAIAAHYDLELNAEFAYLTGRYLTSLPLTPVEASPSVRHVMLRWLEEAPGLAQR VAQKLLDVVNNKYDLLIDTLDRLVVAAIVSNAIDATSGGKVKALIIAHGYSTASSIAG VANRLIGEKIYHAMDMPMEVAFSDVSRAIVDYLQHTDTRAGVMVLIDMGYTKEIADAL LSVIHGPLVVVDNVTTRLALNVASEIALQKNIEQIAEEIVPLNQSRWDVFWPAQKKAR ALLVTCITGIGTAFKFKNLMEKSQLTDFDINIIACEYTRLKNSRMAASLLNQYEVIAV VGTIDPQLAGVPWVGIEELLGEQGYAHLSQLLSGYLNDKQIALINKNMVREFSLHNVV NSLTILNANKTIGHIETIIAEWQSTLGFSFNNNLIISLYVHLSCMIERLVMRNEITHY KNMTEFNERHGEFIAMVNHSFQRLKILYNVALPVAEIGYIHDIFELRIEDFHW" gene complement(632190..633188) /locus_tag="STM0572" /db_xref="GeneID:1252092" CDS complement(632190..633176) /locus_tag="STM0572" /note="similar to E. coli putative transport protein (AAC76396.1); Blastp hit to AAC76396.1 (347 aa), 27% identity in aa 42 - 299" /codon_start=1 /transl_table=11 /product="phosphosugar isomerase" /protein_id="NP_459564.1" /db_xref="GI:16763949" /db_xref="GeneID:1252092" /translation="MSVAHENARRIISDILGKQNIERVWFVGCGGSLTGFWPGKYFLD CEASKLAVGYITSNEFVHATPKALGKNSVVILASQQGNTAETVAAARVAREKGAATIG LVYQPDTPLCEYSDYIIEYQWARYPETVDPAQQKAAYSLWLALEILAQTEGYAQYDEL VSAFGRFSDVVHGAQRQVQEDAQRFAAEWKDEKVVYMMGSGPSFGAAHQESICILLEM QWINSASIHSGEYFHGPFEITEPGTPFILLQSSGRTRPLDDRAIRFIERYQGKLQLID ADKLGIQDLSTDVGEYFCGLLHNCVLDVYNLALATARNHPLTTRRYMWKVEY" regulatory complement(633183..633188) /regulatory_class="ribosome_binding_site" /locus_tag="STM0572" /note="putative RBS for STM0572; RegulonDB:STMS1H000901" gene complement(633243..634290) /locus_tag="STM0573" /db_xref="GeneID:1252093" CDS complement(633243..634286) /locus_tag="STM0573" /note="similar to E. coli L-glutamine:D-fructose-6-phosphate aminotransferase (AAC76752.1); Blastp hit to AAC76752.1 (609 aa), 21% identity in aa 293 - 601" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459565.1" /db_xref="GI:16763950" /db_xref="GeneID:1252093" /translation="MNETPLRLLEMLTQTREDLWRAAQALTERGVTRIILTGSGTSYH GALTARTFMQRWCALPVDVCWPFMLDDETLARSGKALVVGISQGGGSLSTLAAMERAR NVGHITASMAGVAPATIDRAADYILTVPCGEETAGAKTKGYHCTVLNLMLLALAVAGQ QQRLDGEQRRSLLLRMEKTFNHLPALVTASQAWAQTNALALRDSADIRLTGPATLFGT VQEGALKMLETLRCPVSGYEFEEFIHGIYNAFNAQSALIMLDPQPDARQDRLAQILGE WTPSIYRIGPQVENNGLNLNFPFVNDEDFAVFEYIIPLQMLCAILPPQKGINPAIPKD PQFHQKMKSKQEI" regulatory complement(634285..634290) /regulatory_class="ribosome_binding_site" /locus_tag="STM0573" /note="putative RBS for STM0573; RegulonDB:STMS1H000902" gene complement(634319..635181) /locus_tag="STM0574" /db_xref="GeneID:1252094" CDS complement(634319..635173) /locus_tag="STM0574" /note="similar to E. coli PTS enzyme IID, mannose-specific (AAC74889.1); Blastp hit to AAC74889.1 (286 aa), 37% identity in aa 4 - 284" /codon_start=1 /transl_table=11 /product="PTS mannose transporter subunit IID" /protein_id="NP_459566.1" /db_xref="GI:16763951" /db_xref="GeneID:1252094" /translation="MSEVTQTLIDDAQAHSQSESRITARDLRSVFWRSFTLQGSWNYE RQQHMGYAFAMSPALKRIYQDPAELGRALQRHLVLFNTTPHLSTFVFGLSIAMEEENQ RNPDFNEESINAVKTSLMGPLAGIGDSIFWGSLKVIAAGMGIYFAQQGSILGPILALL VYNIPHILCRWYALKLGYRAGTTWLMRLWQSGLMDRVTYIASIVGLMVVGAMTASMID ITTPLSFTAGQTTMKVQDFIDKILPSLLPLLFTLGMYKLIRKGVNINWILLGTVVFGL LASALGLL" gene complement(635176..635926) /locus_tag="STM0575" /db_xref="GeneID:1252095" CDS complement(635176..635919) /locus_tag="STM0575" /note="similar to E. coli PTS enzyme IIC, mannose-specific (AAC74888.1); Blastp hit to AAC74888.1 (266 aa), 34% identity in aa 6 - 240" /codon_start=1 /transl_table=11 /product="PTS mannose transporter subunit IICD" /protein_id="NP_459567.1" /db_xref="GI:16763952" /db_xref="GeneID:1252095" /translation="MLLTATLLGLIAALGILDGRLLGVSMIDRPLVMCALTGLVCGNL HEGILIGATLELIFLGNVAIGAAVPPDVVTGSVLATAFSIMSGRGPEAALTIAIPISM LAQTLGVLVRVVNARFGHMADRYAAQGNTRMVAVMHLGGPTLLYFLSGFLPVFFAILL GSAAVTWFLDAIPAFITNGLVVASKILPALGFALLISMMLSSKLMPYLGLGFLIAAYT KLDIIAIALFAVVLAFIISQFLNTSQQEG" regulatory complement(635176..635181) /regulatory_class="ribosome_binding_site" /locus_tag="STM0575" /note="putative RBS for STM0574; RegulonDB:STMS1H000903" regulatory complement(635921..635926) /regulatory_class="ribosome_binding_site" /locus_tag="STM0575" /note="putative RBS for STM0575; RegulonDB:STMS1H000904" gene complement(635934..636410) /locus_tag="STM0576" /db_xref="GeneID:1252096" CDS complement(635934..636404) /locus_tag="STM0576" /note="similar to E. coli PTS enzyme IIAB, mannose-specific (AAC74887.1); Blastp hit to AAC74887.1 (323 aa), 32% identity in aa 163 - 306" /codon_start=1 /transl_table=11 /product="PTS mannose/fructose/sorbose transporter subunit IIB" /protein_id="NP_459568.1" /db_xref="GI:16763953" /db_xref="GeneID:1252096" /translation="MIKLVRIDYRLLHGQVVFAWTRALDIDHIIVANANAAGDAFVSM SLSLAKPAGVSLDIITVEQAAEKLASGKLDHKKVMVVLGNTAETLAFVEKVPGISVIN YGGIAQKEGAQQFGKAIYLTEQEIADSQALKAKGIRLEMRQVPAHSAELLNDKL" gene complement(636382..636838) /locus_tag="STM0577" /db_xref="GeneID:1252097" CDS complement(636382..636831) /locus_tag="STM0577" /note="similar to E. coli PTS enzyme IIAB, mannose-specific (AAC74887.1); Blastp hit to AAC74887.1 (323 aa), 26% identity in aa 5 - 126" /codon_start=1 /transl_table=11 /product="PTS mannose transporter subunit IIAB" /protein_id="NP_459569.1" /db_xref="GI:16763954" /db_xref="GeneID:1252097" /translation="MRHVYVASHGPFARGLINSLSLLIGDEHGVTPVCAYDGDIVTTE QLEQTLENLIAQANGEEVVVFTDLLGGSINNSAAKVLMRHRHVFVVAGVNMTLLLEFL LCEEESTDAAITYATNAARESIVFINTLITQPSADLQGESHDQISAH" regulatory complement(636405..636410) /regulatory_class="ribosome_binding_site" /locus_tag="STM0577" /note="putative RBS for STM0576; RegulonDB:STMS1H000905" regulatory complement(636833..636838) /regulatory_class="ribosome_binding_site" /locus_tag="STM0577" /note="putative RBS for STM0577; RegulonDB:STMS1H000906" gene complement(637031..637695) /gene="nfnB" /locus_tag="STM0578" /db_xref="GeneID:1252098" CDS complement(637031..637684) /gene="nfnB" /locus_tag="STM0578" /EC_number="1.-.-.-" /EC_number="1.5.1.34" /note="oxygen-insensitive NAD(P)H nitroreductase; oxygen-insensitive NAD(P)H nitroreductase. (SW:NFNB_SALTY)" /codon_start=1 /transl_table=11 /product="NAD(P)H nitroreductase" /protein_id="NP_459570.1" /db_xref="GI:16763955" /db_xref="GeneID:1252098" /translation="MDIVSVALQRYSTKAFDPSKKLTAEEADKIKTLLQYSPSSTNSQ PWHFIVASTEEGKARVAKSAAGNYTFNERKMLDASHVVVFCAKTAMDDAWLERVVDQE DADGRFATPEAKAANDKGRRFFADMHRVSLKDDHQWMAKQVYLNVGNFLLGVAAMGLD AVPIEGFDAEVLDAEFGLKEKGYTSLVVVPVGHHSVEDFNAGLPKSRLPLETTLTEV" regulatory complement(637690..637695) /regulatory_class="ribosome_binding_site" /gene="nfnB" /locus_tag="STM0578" /note="putative RBS for nfnB; RegulonDB:STMS1H000907" gene complement(637781..638160) /gene="ybdF" /locus_tag="STM0579" /db_xref="GeneID:1252099" CDS complement(637781..638149) /gene="ybdF" /locus_tag="STM0579" /note="similar to E. coli orf, hypothetical protein (AAC73680.1); Blastp hit to AAC73680.1 (122 aa), 75% identity in aa 1 - 121" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459571.1" /db_xref="GI:16763956" /db_xref="GeneID:1252099" /translation="MDGQTLHAWAKRFALELPFTEHCWPFGPQYDVFKVGGKIFMLFT EHHCRPVVNLKSDPQKSLVNQQIYPSIAPGYHMNKKHWISVYAGEDITVSLLNDLIND SWNLVVDGLPKREQLRLRPR" gene complement(638149..638735) /locus_tag="STM0580" /db_xref="GeneID:1252100" CDS complement(638149..638730) /locus_tag="STM0580" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="NP_459572.1" /db_xref="GI:16763957" /db_xref="GeneID:1252100" /translation="MARPKSEDKKQALLEAATQAIAQSGIAASTAVIARNAGVAEGTL FRYFATKDELINTLYLHLKQDLCQSMIMELDRSITDAKMMTRFIWNSYISWGLNHPAR HRAIRQLAVSEKLTKETEQRADDMFPELRDLCHRSVLMVFMSDEYRAFGDGLFLALAE TTMDFAARDPARAGEYIALGFEAMWRALTREEQ" regulatory complement(638155..638160) /regulatory_class="ribosome_binding_site" /gene="ybdF" /locus_tag="STM0579" /note="putative RBS for ybdF; RegulonDB:STMS1H000908" regulatory complement(638730..638735) /regulatory_class="ribosome_binding_site" /locus_tag="STM0580" /note="putative RBS for STM0580; RegulonDB:STMS1H000909" gene 639012..639360 /locus_tag="STM0581" /db_xref="GeneID:1252101" regulatory 639012..639017 /regulatory_class="ribosome_binding_site" /locus_tag="STM0581" /note="putative RBS for STM0581; RegulonDB:STMS1H000910" CDS 639019..639360 /locus_tag="STM0581" /note="resistance against oxidative stress protein A (gi|9885772)" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator RamA" /protein_id="NP_459573.1" /db_xref="GI:16763958" /db_xref="GeneID:1252101" /translation="MTISAQVIDTIVEWIDDNLNQPLRIDDIARHAGYSKWHLQRLFM QYKGESLGRYVRERKLKLAARDLLDTDQKVYDICLKYGFDSQQTFTRIFTRTFNLPPG AYRKEKHGRTH" gene complement(639366..639614) /gene="ybdJ" /locus_tag="STM0582" /db_xref="GeneID:1252102" CDS complement(639366..639614) /gene="ybdJ" /locus_tag="STM0582" /note="similar to E. coli orf, hypothetical protein (AAC73681.1); Blastp hit to AAC73681.1 (82 aa), 85% identity in aa 1 - 82" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459574.1" /db_xref="GI:16763959" /db_xref="GeneID:1252102" /translation="MKHPLESLMTAAGILLMALLSSLLLPAPSLGLALAQKLVGIFHL MDLNQLYTLLFCLWFLLLGALEYYVIRFIWRRWFSLAD" gene complement(639681..640799) /gene="ybdK" /locus_tag="STM0583" /db_xref="GeneID:1252103" CDS complement(639681..640799) /gene="ybdK" /locus_tag="STM0583" /note="similar to E. coli orf, hypothetical protein (AAC73682.1); Blastp hit to AAC73682.1 (372 aa), 84% identity in aa 1 - 371" /codon_start=1 /transl_table=11 /product="glutamate--cysteine ligase" /protein_id="NP_459575.1" /db_xref="GI:16763960" /db_xref="GeneID:1252103" /translation="MALNDFHVSEPYTLGIELEMQVINPPGYDLSQDSSTLIDAVKPQ LTAGEIKHDITESMLEMATGVCRDIDQAAAQLSAMQHVILQAASEHHLGICGGGTHPF QKWQRQEVCDNERYQRTLENFGYLIQQATVFGQHVHVGCANGDDAIYLLHGLSHFVPH FIALSAASPYMQGADTRFACARLNIFSAFPDNGPMPWVSNWQEFAGLFRRLSYTTMID SIKDLHWDIRPSPAFGTVEVRVMDTPLTLDHAINMAGLIQATAHWLLTERPFKPQEQD YLLYKFNRFQACRYGLEGVLTDAYTGDRRRLADDTLRLLDNVTPSARKLGADSAIDAL RLQVKKGGNEAQYMREFIADGGSLIGLVQKHCEIWAGQ" gene complement(640811..641534) /gene="entD" /locus_tag="STM0584" /db_xref="GeneID:1252104" CDS complement(640811..641515) /gene="entD" /locus_tag="STM0584" /note="similar to E. coli enterochelin synthetase, component D (AAC73684.1); Blastp hit to AAC73684.1 (209 aa), 57% identity in aa 4 - 185" /codon_start=1 /transl_table=11 /product="phosphopantetheinyltransferase" /protein_id="NP_459576.1" /db_xref="GI:16763961" /db_xref="GeneID:1252104" /translation="MLTSHFPLPFAGHRLHIVDFDASSFREHDLLWLPHHDRLRSAGR KRKAEHLAGRIAAVHALREVGVRTVPGMGDKRQPLWPDGLFGSISHCATTALAVISRQ RIGIDIEKIMSQHTATELAPSIIDSDERQILQASLLPFPLALTLAFSAKESVYKAFSD RVTLPGFNSAKVTSLTATHISLHLLPAFAATMAERTVRTEWFQRDNSVITLVSAITRV PHDRSAPASILSAIPR" regulatory complement(641529..641534) /regulatory_class="ribosome_binding_site" /gene="entD" /locus_tag="STM0584" /note="putative RBS for entD; RegulonDB:STMS1H000911" gene complement(641561..643981) /gene="fepA" /locus_tag="STM0585" /db_xref="GeneID:1252105" CDS complement(641561..643816) /gene="fepA" /locus_tag="STM0585" /note="similar to E. coli outer membrane receptor for ferric enterobactin (enterochelin) and colicins B and D (AAC73685.1); Blastp hit to AAC73685.1 (746 aa), 81% identity in aa 1 - 746" /codon_start=1 /transl_table=11 /product="outer membrane receptor protein" /protein_id="NP_459577.1" /db_xref="GI:16763962" /db_xref="GeneID:1252105" /translation="MNKKIHSLTLLVNLGIYGATLPVMAEDKTDSAALTNEDTIVVTA AQQNLQAPGVSTITADEIRKNPPARDVSEIIRTMPGVNLTGNSTSGQRGNNRQIDIRG MGPENTLILIDGKPVTSRNSVRLGWRGERDTRGDTAWVPPEMIERIEVLRGPAAARYG NGAAGGVVNIITKKGGSEWHGSWNTYFNAPEHKDEGATKRTNFSLNGPLGGDFSFRLY GNLDKTQADARNINQGHQSERTGSYADTLPAGREGVINKDINGVVRWDFAPLQSLELE AGYSRQGNLYAGDTQNTNTNQLVKDNYGKETNRLYRQNYSLTWNGGWNNGVTTSNWVQ YEHTRNSRMPEGLAGGTEGIFDPKASQKYADADLNDVTLHSEVSLPFDLLVNQNLTLG TEWAQQRMKDQLSNSQTFMGGNIPGYSSTNRSPYSKAEIFSLFAENNMELTDSTMLTP GLRFDHHSIVGDNWSPSLNLSQGLGDDFTLKMGIARAYKAPSLYQTNPNYILYSKGQG CYATGAGTGIGCYMMGNDDLKAETSINKEIGLEFKRDGWLAGVTWFRNDYRNKIEAGT VPLQRINNGKTDVYQWENVPKAVVEGLEGTLNVPVSDTVNWTNNVTYMLQSKNKETGE RLSIIPQYTLNSTLSWQVRQDVSLQSTFTWYGKQEPKKYDYQGNPVTGTDKQAVSPYS IVGLSATWDVTKNVSLTGGVDNLFDKRLWREGNAQTVRDTQTGAYMAGAGAYTYNEPG RTWYMSINTHF" regulatory complement(643822..643827) /regulatory_class="ribosome_binding_site" /gene="fepA" /locus_tag="STM0585" /note="putative RBS for fepA; RegulonDB:STMS1H000912" regulatory complement(643954..643962) /regulatory_class="minus_10_signal" /gene="fepA" /locus_tag="STM0585" /note="putative -10_signal for fepA; RegulonDB:STMLTH004685" regulatory complement(643973..643981) /regulatory_class="minus_35_signal" /gene="fepA" /locus_tag="STM0585" /note="putative -35_signal for fepA; RegulonDB:STMLTH004685" gene 643995..645219 /gene="fes" /locus_tag="STM0586" /db_xref="GeneID:1252106" regulatory 643995..644000 /regulatory_class="ribosome_binding_site" /gene="fes" /locus_tag="STM0586" /note="putative RBS for fes; RegulonDB:STMS1H000913" CDS 644005..645219 /gene="fes" /locus_tag="STM0586" /note="similar to E. coli enterochelin esterase (AAC73686.1); Blastp hit to AAC73686.1 (374 aa), 74% identity in aa 2 - 369" /codon_start=1 /transl_table=11 /product="enterochelin esterase" /protein_id="NP_459578.1" /db_xref="GI:16763963" /db_xref="GeneID:1252106" /translation="MKEALATGSEAWWRTKTGPEWIREKDGNYRVTFWWRDPQGNETH SPIRRVWVYITGVTDHHQNAQPQTMARIAGTDVWRWSTALSANWRGSYCFIPTERDDV FAAFAPGETPDRNVLREGWRQLLPQAIADPLNSQSWRGGRGHAVSALEMPDAPLQPGW DRPETPYSPPLMMQWHSERLGNSRRVWILTTGDEAPEERPLAILLDGQFWAENMPVWP ALASLTHQRLLPGAVYLLIDAIDTQHRSQELPCNADFWLAVQQELLPQVRAVTPFSDD AGRTVVAGQSFGGLSALYAGLNWPTRFGCVLSQSGSFWWPHRITPPEGEVITRLKTGA LCARGLRIVLEAGVREPIVFQANQALYAQLNTSQQSIFWRQVDGGHDALCWRGGLTQG LMLLWQPLIDTL" gene 645242..645468 /gene="ybdZ" /locus_tag="STM0587" /db_xref="GeneID:1252107" regulatory 645242..645247 /regulatory_class="ribosome_binding_site" /gene="ybdZ" /locus_tag="STM0587" /note="putative RBS for ybdZ; RegulonDB:STMS1H000914" CDS 645250..645468 /gene="ybdZ" /locus_tag="STM0587" /codon_start=1 /transl_table=11 /product="MbtH family protein" /protein_id="NP_459579.1" /db_xref="GI:16763964" /db_xref="GeneID:1252107" /translation="MEFSNPFDNPQGQFYILQNAQRQFSLWPAACALPAGWDVVCEPQ SQDACQQWLNTRWTTLNPAHYADKQEAK" gene 645454..649349 /gene="entF" /locus_tag="STM0588" /db_xref="GeneID:1252108" regulatory 645454..645459 /regulatory_class="ribosome_binding_site" /gene="ybdZ" /locus_tag="STM0587" /note="putative RBS for entF; RegulonDB:STMS1H000915" CDS 645465..649349 /gene="entF" /locus_tag="STM0588" /note="similar to E. coli ATP-dependent serine activating enzyme (may be part of enterobactin synthase as component F) (AAC73687.1); Blastp hit to AAC73687.1 (1293 aa), 79% identity in aa 1 - 1293" /codon_start=1 /transl_table=11 /product="non-ribosomal peptide synthetase" /protein_id="NP_459580.1" /db_xref="GI:16763965" /db_xref="GeneID:1252108" /translation="MTQRLPLVAAQPGIWMAEKLSDLPSAWSVAHYVELNGELDAALL AKAVAVGMQQADTLRMRFTEENGEVWQWIDPEHTFGEPPIADLRDQPDPHHAALALMQ ADLRQNLRADSGKPLAFHQLIRIDDTRWYWYQRYHHLLVDGFSFPAITRQIAAIYRAW QSDAPTPESPFTPFADVVEEYQRYRQSEAWQRDGAFWAQQRRELPPPASMSAAPLPGR SASADILRMKLSAPAGAFRQLAAHMPEIPRADLALALVTLWLGRLCGRMDYAAGFIFM RRMGSAALTATGPVLNVLPLAVNLHATEDLPTLAKRLAAQLKKMRRHQRYDAEQIVRD SGRAAGETPLFGPVLNIKVFDYHLDLPGIQAQTHTLATGPVNDLELALFPDENGGLDI ELLANAQRYDDATLSRHALRLMALITQFADNPALRCGDAQMLLAEEQTQLAHLNNTAV TIPAATLSDLVAQQAQKTPEASALADAHYHFTYREMREQVVALAYALRERGVQPGDSV AVALPRSVFLTLALHGIVEAGAAWLPLDTGYPDDRLRMMLEDAQPKLLITTQAQLARF HDIPGMEYLCYSQPLPVSDATPLRLSLPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRL LWMQDHYPLTADDVVAQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQRFF AQYGVTTTHFVPSMLAAFIASLTPASAGKSCASLKRVFCSGEALPTALCREWETLTNA PLHNLYGPTEAAVDVSWYPACGDELAAVDGNSIPIGYPVWNTGLRILDAHMQPVPPGV AGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDSGAVEYLGRS DDQLKIRGQRIELGEIDRVMQTLPDVEQAVAHACVFNQAAATGGDARQLVGYLVSHSG LPLDLPALQEKLRQKLPAHMVPVVLLQLASLPLSANGKLDRKALPLPDLAPRVKGRAP QSATEIAVAAAFSRLLGCEINDVESDFFALGGHSLLAMKLAAQLSQTFNRQVTPGQVM VASDVAQLSKLLDTDDDERSRNLGFGPLLPLRESDGPTLFCFHPASGFAWQFSVLSRY LSPSWSIMGIQSPRPAGPMQTATTLDEVCEHHLATLLARQPHGPYYLLGYSLGGTLAQ GIAARLRARGETVAFLGLLDTWPPETQNWREKEANGLNPDVLAEIERERAAFVAAQQG NASDALFTAIEGNYADAVRLLTTAHSVPFDGHATLFVADKTVPEGVSPEQSWSPWIAS LAIYRQPCAHVDIISPSAFETIGPIISELINK" gene 649586..650735 /gene="fepE" /locus_tag="STM0589" /db_xref="GeneID:1252109" regulatory 649586..649591 /regulatory_class="ribosome_binding_site" /gene="fepE" /locus_tag="STM0589" /note="putative RBS for fepE; RegulonDB:STMS1H000916" CDS 649599..650735 /gene="fepE" /locus_tag="STM0589" /note="similar to E. coli ferric enterobactin (enterochelin) transport (AAC73688.1); Blastp hit to AAC73688.1 (377 aa), 73% identity in aa 1 - 373" /codon_start=1 /transl_table=11 /product="LPS O-antigen length regulator" /protein_id="NP_459581.1" /db_xref="GI:16763966" /db_xref="GeneID:1252109" /translation="MPSLNVKQEKNQSFAGYSLPPANSHEIDLFSLIEVLWQAKRRIL ATVFAFACVGLLLSFLLPQKWTSQAIVTPAESVQWQGLERTLTALRVLDMEVSVDRGS VFNLFIKKFSSPSLLEEYLRSSPYVMDQLKGAQIDEQDLHRAIVLLSEKMKAVDSNVG KKNETSLFTSWTLSFTAPTREEAQKVLAGYIQYISDIVVKETLENIRNQLEIKTRYEQ EKLAMDRVRLKNQLDANIQRLHYSLEIANAAGIKRPVYSNGQAVKDDPDFSISLGADG ISRKLEIEKGVTDVAEIDGDLRNRQYHVEQLAAMNVSDVKFTPFKYQLSPSLPVKKDG PGKAIIIILAALIGGMMACGGVLLRHAMVSRKMENALAIDERLV" gene complement(650788..651599) /gene="fepC" /locus_tag="STM0590" /db_xref="GeneID:1252110" CDS complement(650788..651582) /gene="fepC" /locus_tag="STM0590" /note="ABC superfamily (atp_bind); similar to E. coli ATP-binding component of ferric enterobactin transport (AAC73689.1); Blastp hit to AAC73689.1 (271 aa), 92% identity in aa 1 - 263" /codon_start=1 /transl_table=11 /product="iron-enterobactin transporter ATP-binding protein" /protein_id="NP_459582.1" /db_xref="GI:16763967" /db_xref="GeneID:1252110" /translation="MTESVARLRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGC GKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATTPGDITVQELV ARGRYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQ ETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALR EGNIVAQGAPKEIVTAELIEKIYGLRCMIIDDPVAGTPLVVPLGRR" gene complement(651579..652584) /gene="fepG" /locus_tag="STM0591" /db_xref="GeneID:1252111" CDS complement(651579..652568) /gene="fepG" /locus_tag="STM0591" /note="ABC superfamily (membrane); similar to E. coli ferric enterobactin transport protein (AAC73690.1); Blastp hit to AAC73690.1 (330 aa), 86% identity in aa 2 - 330" /codon_start=1 /transl_table=11 /product="ferric enterobactin transporter" /protein_id="NP_459583.1" /db_xref="GI:16763968" /db_xref="GeneID:1252111" /translation="MFLSRRLIVSCLLLAAGCFAIGLWSLQSGAVPLETGQIIAALLG DAPRNITLVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSG VLVAMVLFGQHLTAIALAAMAGGIVTSLIVWLLAWRNGIETFRLIIIGIGIRAMLVAF NTWLLLQASLETALTAGLWNAGSLNGLTWAKTWPSAPLIMVMLTGAALLVRRMRLLEM GDDSACALGVSVERSRLMLMLVAVSLTAAATALAGPISFIALVAPHIARRLSGTARWG LTQSALCGALLLLAADACAQQLFMPYQLPVGVVTVSLGGIYLIVLLIQESRKK" regulatory complement(651594..651599) /regulatory_class="ribosome_binding_site" /gene="fepC" /locus_tag="STM0590" /note="putative RBS for fepC; RegulonDB:STMS1H000917" gene complement(652568..653728) /gene="fepD" /locus_tag="STM0592" /db_xref="GeneID:1252112" CDS complement(652568..653575) /gene="fepD" /locus_tag="STM0592" /note="ABC superfamily (membrane); similar to E. coli ferric enterobactin (enterochelin) transport (AAC73691.1); Blastp hit to AAC73691.1 (334 aa), 88% identity in aa 1 - 333" /codon_start=1 /transl_table=11 /product="iron-enterobactin transporter" /protein_id="NP_459584.1" /db_xref="GI:16763969" /db_xref="GeneID:1252112" /translation="MSCSFSVTRAFAVPGLLLLLSLAAVLSLVIGAKPLPAAVVLEAF TGVCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGILGVNNGAS FAIVLGAALFGFSTPLEQLFMAFSGALIASLIVAFTGSQGGGQLSPVRLTLAGVALGA VLEGLTSGIALLNPEVYDQLRFWQAGSLDIRSLQTLKVALAPVVIAGIVALFLSRALN SLSLGSDTATALGSKVARTQLIGLLAITVLCGSATALVGPIAFIGLMMPHMARWLVGA DHRWSLPVTLLATPALLLFADIIGRLLVPGELRVSVVSAFIGAPVLIFLVRRKSSGGG L" regulatory complement(652579..652584) /regulatory_class="ribosome_binding_site" /gene="fepG" /locus_tag="STM0591" /note="putative RBS for fepG; RegulonDB:STMS1H000918" regulatory complement(653583..653588) /regulatory_class="ribosome_binding_site" /gene="fepD" /locus_tag="STM0592" /note="putative RBS for fepD; RegulonDB:STMS1H000919" gene 653675..654930 /gene="ybdA" /locus_tag="STM0593" /db_xref="GeneID:1252113" regulatory 653675..653680 /regulatory_class="ribosome_binding_site" /gene="ybdA" /locus_tag="STM0593" /note="putative RBS for ybdA; RegulonDB:STMS1H000920" CDS 653686..654930 /gene="ybdA" /locus_tag="STM0593" /note="similar to E. coli putative transport (AAC73692.1); Blastp hit to AAC73692.1 (416 aa), 90% identity in aa 1 - 409" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_459585.1" /db_xref="GI:16763970" /db_xref="GeneID:1252113" /translation="MNRQSWLLNLSLLKTHPAFRAVFLARFISIVSLGLLGVAVPVQI QMMTHSTWQVGLSVTLTGGAMFIGLMVGGVLADRYERKKVILLARGTCGIGFIGLCVN ALLPEPSLLAIYLLGLWDGFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSV ISPMLGGILLASGGVAWNYGLAAAGTFITLLPLLTLPRLPVPPQPRENPFIALLAAFR FLLASPLIGGIALLGGLVTMASAVRVLYPALAMSWQMSAAQIGLLYAAIPLGAAIGAL TSGQLAHSVRPGLIMLVSTVGSFLAVGLFAIMPVWIAGVICLALFGWLSAISSLLQYT LLQTQTPENMLGRMNGLWTAQNVTGDAIGAALLGGLGAMMTPVASASVSGFGLVIIGL LLLLVLGELRRFRQTPPVSDAG" regulatory complement(653704..653712) /regulatory_class="minus_10_signal" /gene="fepD" /locus_tag="STM0592" /note="putative -10_signal for fepD; RegulonDB:STMLTH004686" regulatory complement(653720..653728) /regulatory_class="minus_35_signal" /gene="fepD" /locus_tag="STM0592" /note="putative -35_signal for fepD; RegulonDB:STMLTH004686" gene complement(654993..656126) /gene="fepB" /locus_tag="STM0594" /db_xref="GeneID:1252114" CDS complement(654993..655949) /gene="fepB" /locus_tag="STM0594" /note="ABC superfamily (peri_perm); similar to E. coli ferric enterobactin (enterochelin) binding protein; periplasmic component (AAC73693.1); Blastp hit to AAC73693.1 (318 aa), 79% identity in aa 1 - 318" /codon_start=1 /transl_table=11 /product="Fe2+-enterobactin ABC transporter substrate-binding protein" /protein_id="NP_459586.1" /db_xref="GI:16763971" /db_xref="GeneID:1252114" /translation="MRLPAFYRWLLLVVGISISGISLAQDAGWPRQIQDSRGVHTLDH KPARIVSTSVTLTGSLLAIDAPVVASGATTPNNRFADDQGFMRQWSDVAKARHVARLY IGEPNAETVAAQMPDLILISATGGDSALALYDQLSAIAPTLVINYDDKSWQSLLTQLG EITGQEKQAAARIAEFETQLTTVKQRIALPPQPVSALVYTPAAHSANLWTPESAQGKL LTQLGFTLATLPRGLQTSKSQGKRHDIIQLGGENLAAGLNGESLFLFAGDNKDVAALY ANPLLAHLPAVQNKRVYALGTETFRLDYYSATLLLNRLAALF" regulatory complement(655956..655961) /regulatory_class="ribosome_binding_site" /gene="fepB" /locus_tag="STM0594" /note="putative RBS for fepB; RegulonDB:STMS1H000921" regulatory complement(656099..656107) /regulatory_class="minus_10_signal" /gene="fepB" /locus_tag="STM0594" /note="putative -10_signal for fepB; RegulonDB:STMLTH004687" regulatory complement(656118..656126) /regulatory_class="minus_35_signal" /gene="fepB" /locus_tag="STM0594" /note="putative -35_signal for fepB; RegulonDB:STMLTH004687" gene 656212..657433 /gene="entC" /locus_tag="STM0595" /db_xref="GeneID:1252115" regulatory 656212..656220 /regulatory_class="minus_35_signal" /gene="entC" /locus_tag="STM0595" /note="putative -35_signal for entC; RegulonDB:STMLTH004688" regulatory 656239..656247 /regulatory_class="minus_10_signal" /gene="entC" /locus_tag="STM0595" /note="putative -10_signal for entC; RegulonDB:STMLTH004688" regulatory 656249..656254 /regulatory_class="ribosome_binding_site" /gene="entC" /locus_tag="STM0595" /note="putative RBS for entC; RegulonDB:STMS1H000922" CDS 656258..657433 /gene="entC" /locus_tag="STM0595" /EC_number="5.4.4.2" /note="similar to E. coli isochorismate hydroxymutase 2, enterochelin biosynthesis (AAC73694.1); Blastp hit to AAC73694.1 (391 aa), 84% identity in aa 1 - 391" /codon_start=1 /transl_table=11 /product="isochorismate synthase EntC" /protein_id="NP_459587.1" /db_xref="GI:16763972" /db_xref="GeneID:1252115" /translation="MDMSLAEDAQETMATLAPDRFFFMSPYRSFTTSGCFARYTEPAV AGDSPDSPFQQKLRQQFAEAKSQGIANPILVGAIPFDTRQPSSLFIPMAWQSFSRQQK QRTARYFTDHQSLTVTARKAIPEQDAFEAMVARAAMLTATPDVDKVVLSRLIDITTDV AVDSGALLERLVAQNPVSYNFHVPLADGGVLLGASPELLLRKEGERFSSLPLAGSARR QPDDVLDREAGNRLLASQKDRHEHELVTQAMKQILRDRSTELQLPSSPQLITTPTLWH LGTPFEGKANAGENALTLACLLHPTPALSGFPHQVAKKLIAELEPFDRELFGGIVGWC DAEGNGEWVVTIRCAKLHGNQVRLFAGAGIVPASSPVGEWRETGVKLSTMLNVFGLH" gene 657432..659053 /gene="entE" /locus_tag="STM0596" /db_xref="GeneID:1252116" regulatory 657432..657437 /regulatory_class="ribosome_binding_site" /gene="entE" /locus_tag="STM0596" /note="putative RBS for entE; RegulonDB:STMS1H000923" CDS 657443..659053 /gene="entE" /locus_tag="STM0596" /EC_number="6.3.2.-" /note="similar to E. coli 2,3-dihydroxybenzoate-AMP ligase (AAC73695.1); Blastp hit to AAC73695.1 (536 aa), 86% identity in aa 1 - 534" /codon_start=1 /transl_table=11 /product="2,3-dihydroxybenzoate-AMP ligase" /protein_id="NP_459588.1" /db_xref="GI:16763973" /db_xref="GeneID:1252116" /translation="MRIPFTRWPDEFARRYREKGYWQDVPLTDILTRHADSDKTAVIE GERAFSYRQLNQAADNLACSLRRQGIKPGETALVQLGNVPELYITFFALLKLGVAPVL ALFSHQRTELNAYAMQIAPTLVIADRQHTLFAGEDFLNTFVAEHRSVRVVLLRNDDGD HSLDAAMRQAAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSNEIC GFNEDTRFLCAIPAAHNYAMSSPGALGVFLAKGTVVLATDPSATLCFPLIEKHQINAT ALVPPAVSLWLQAIQEWGGNAPLASLRLLQVGGARLSATLAARIPAEIGCQLQQVFGM AEGLVNYTRLDDSPERIINTQGRPMCPDDEVWVADADGNPLPPGEIGRLMTRGPYTFR GYFNSPLHNASAFDANGFYCSGDLISIDQDGYITVHGREKDQINRGGEKIAAEEIENL LLRHPVVIHAALVSMEDELLGEKSCAYLVVKEPLRAVQVRRFLREQGVAEFKLPDRVE CVASLPLTPVGKVDKKQLRQRLASRSPL" gene 659053..659924 /gene="entB" /locus_tag="STM0597" /db_xref="GeneID:1252117" regulatory 659053..659058 /regulatory_class="ribosome_binding_site" /gene="entB" /locus_tag="STM0597" /note="putative RBS for entB; RegulonDB:STMS1H000924" CDS 659067..659924 /gene="entB" /locus_tag="STM0597" /EC_number="3.3.2.1" /note="similar to E. coli 2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase (AAC73696.1); Blastp hit to AAC73696.1 (285 aa), 88% identity in aa 1 - 285" /codon_start=1 /transl_table=11 /product="isochorismatase" /protein_id="NP_459589.1" /db_xref="GI:16763974" /db_xref="GeneID:1252117" /translation="MAIPKLQSYALPTALDIPTNKVNWAFEPERAALLIHDMQDYFVS FWGRNCPMMDQVIANIAALRQYCKEHHIPVYYTAQPKEQSDEDRALLNDMWGPGLTRS PEQQKVVEALTPDEADTVLVKWRYSAFHRSPLEQMLKDTGRNQLIITGVYAHIGCMTT ATDAFMRDIKPFMVADALADFSREEHLMALNYVAGRSGRVVMTESLLPTPVPASKAAL RALILPLLDETDEPLDDENLIDYGLDSVRMMGLAARWRKVHGDIDFVMLAKNPTIDAW WALLSRGVE" gene 659911..660679 /gene="entA" /locus_tag="STM0598" /db_xref="GeneID:1252118" regulatory 659911..659916 /regulatory_class="ribosome_binding_site" /gene="entA" /locus_tag="STM0598" /note="putative RBS for entA; RegulonDB:STMS1H000925" CDS 659924..660679 /gene="entA" /locus_tag="STM0598" /EC_number="1.3.1.28" /note="similar to E. coli 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, enterochelin biosynthesis (AAC73697.1); Blastp hit to AAC73697.1 (248 aa), 90% identity in aa 2 - 248" /codon_start=1 /transl_table=11 /product="2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase" /protein_id="NP_459590.1" /db_xref="GI:16763975" /db_xref="GeneID:1252118" /translation="MTGFDFSDKTVWVTGAGKGIGYATALAFVDAGARVIGFDREFTQ ENYPFATEVMDVADAAQVAQVCQRVLQKTTRLDVLVNAAGILRMGATDALSVDDWQQT FAVNVGGAFNLFSQTMAQFRRQQGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALT VGLELAGCGVRCNVVSPGSTDTDMQRTLWVSEDAEQQRIRGFGEQFKLGIPLGKIARP QEIANTILFLASDLASHITLQDIVVDGGSTLGA" gene 660668..661095 /gene="ybdB" /locus_tag="STM0599" /db_xref="GeneID:1252119" regulatory 660668..660673 /regulatory_class="ribosome_binding_site" /gene="ybdB" /locus_tag="STM0599" /note="putative RBS for ybdB; RegulonDB:STMS1H000926" CDS 660682..661095 /gene="ybdB" /locus_tag="STM0599" /note="similar to E. coli orf, hypothetical protein (AAC73698.1); Blastp hit to AAC73698.1 (137 aa), 91% identity in aa 1 - 137" /codon_start=1 /transl_table=11 /product="thioesterase" /protein_id="NP_459591.1" /db_xref="GI:16763976" /db_xref="GeneID:1252119" /translation="MIWKRHLTLDELNATSQNTLVAHLGIVYTRLGDDVLEAEMPVDA RTHQPFGLLHGGASAALAETLGSMAGYLMTRDGQCVVGTELNATHHRAISQGKVRGVC LPLHLGRQNQSWEITLFDEQGRRCCTCRLGTAVMG" gene 661264..663382 /gene="cstA" /locus_tag="STM0600" /db_xref="GeneID:1252120" regulatory 661264..661269 /regulatory_class="ribosome_binding_site" /gene="cstA" /locus_tag="STM0600" /note="putative RBS for cstA; RegulonDB:STMS1H000927" CDS 661277..663382 /gene="cstA" /locus_tag="STM0600" /note="similar to E. coli carbon starvation protein (AAC73699.1); Blastp hit to AAC73699.1 (701 aa), 97% identity in aa 1 - 701" /codon_start=1 /transl_table=11 /product="carbon starvation protein A" /protein_id="NP_459592.1" /db_xref="GI:16763977" /db_xref="GeneID:1252120" /translation="MNKSGKYLVWTALSVLGAFALGYIALNRGEQINALWIVVASVCV YLIAYRFYGLYIAKKVLAVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPL VGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGATAG VIALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLAIFMGIYLRYLRPGRI GEVSVIGLVFLIFAIISGGWVAASPTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLL APRDYLSTFLKIGTIVGLAVGILIMRPTLTMPALTKFVDGTGPVWTGDLFPFLFITIA CGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVSACIIDPGVYFA MNSPMAVLAPAGTADVVASAAQVVSSWGFAITPDTLHQIANEVGEQSIISRAGGAPTL AVGMAYILHGALGGMMDVAFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVVSPG LKRTDSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLC AVVLFKMKRQRYAWVALVPTAWLLICTLTAGWQKAFSPDAKIGFLAIANKFQAMIDSG NIPPQYTESQLAQLVFNNRLDAGLTIFFMVVVVVLAVFSIKTALAALKIDKPTANETP YEPMPENVDEIVTQAKGAH" gene 663439..663643 /gene="ybdD" /locus_tag="STM0601" /db_xref="GeneID:1252121" regulatory 663439..663444 /regulatory_class="ribosome_binding_site" /gene="ybdD" /locus_tag="STM0601" /note="putative RBS for ybdD; RegulonDB:STMS1H000928" CDS 663446..663643 /gene="ybdD" /locus_tag="STM0601" /note="similar to E. coli orf, hypothetical protein (AAC77309.1); Blastp hit to AAC77309.1 (67 aa), 73% identity in aa 1 - 67" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459593.1" /db_xref="GI:16763978" /db_xref="GeneID:1252121" /translation="MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTY EEFFRERQDARYGGKGGARCC" gene complement(663679..664781) /gene="ybdH" /locus_tag="STM0602" /db_xref="GeneID:1252122" CDS complement(663679..664767) /gene="ybdH" /locus_tag="STM0602" /note="similar to E. coli putative oxidoreductase (AAC73700.1); Blastp hit to AAC73700.1 (362 aa), 81% identity in aa 1 - 361" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_459594.1" /db_xref="GI:16763979" /db_xref="GeneID:1252122" /translation="MNHTEIRVVTGPANYFSHAGSLERLTDFFTPEQLSHAVWVYGER AIAAARPYLPEAFERAGAKHLPFTGHCSERHVAQLAHACNDDRQVVIGVGGGALLDTA KALARRLALPFVAIPTIAATCAAWTPLSVWYNDAGQALQFEIFDDANFLVLVEPRIIL QAPDDYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINSACAIRDLLLDSSEQALA DKQQRRLTQAFCDVVDAIIAGGGMVGGLGERYTRVAAAHAVHNGLTVLPQTEKFLHGT KVAYGILVQSALLGQDDVLAQLITAYRRFHLPARLSELDVDIHNTAEIDRVIAHTLRP VESIHYLPVTLTPDTLRAAFEKVEFFRI" regulatory complement(664776..664781) /regulatory_class="ribosome_binding_site" /gene="ybdH" /locus_tag="STM0602" /note="putative RBS for ybdH; RegulonDB:STMS1H000929" gene 664876..666054 /gene="ybdL" /locus_tag="STM0603" /db_xref="GeneID:1252123" regulatory 664876..664881 /regulatory_class="ribosome_binding_site" /gene="ybdL" /locus_tag="STM0603" /note="putative RBS for ybdL; RegulonDB:STMS1H000930" CDS 664894..666054 /gene="ybdL" /locus_tag="STM0603" /EC_number="2.6.1.1" /note="similar to E. coli putative aminotransferase (AAC73701.1); Blastp hit to AAC73701.1 (386 aa), 85% identity in aa 1 - 386" /codon_start=1 /transl_table=11 /product="methionine aminotransferase" /protein_id="NP_459595.1" /db_xref="GI:16763980" /db_xref="GeneID:1252123" /translation="MRNNPLIPKSKLPNLGTTIFTQMSALAQKHQAINLSQGFPDFDG PRYLHERLAYHVAQGANQYAPMTGAQALREAIADKTAEIYGYRPDDVSDITVTAGATE ALYAAITALVRAGDEVICFDPSYDSYAPAVALSGGVLKRIALTPPHFRVDWQAFSALL SERTRLVILNTPHNPTATVWRQADIEALWQAIGEREIYVLSDEVYEHICFAAEGHASV LAHPQLRERAVAVSSFGKTFHMTGWKIGYCVAPAAISAEIRKVHQYLTFCVNTPAQLA LADMLRAAPEHYRALPDFYRKKRDVLVNALAQSRLKVLPCEGTYFLLIDYSAVSTLND VEFCQWLTEEVGVAAIPLSVFCAAPFPHQLIRLCFAKQESTLLAAAERLCKL" gene complement(666055..666689) /gene="ybdM" /locus_tag="STM0604" /db_xref="GeneID:1252124" CDS complement(666055..666672) /gene="ybdM" /locus_tag="STM0604" /note="similar to E. coli orf, hypothetical protein (AAC73702.1); Blastp hit to AAC73702.1 (209 aa), 77% identity in aa 5 - 209" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459596.1" /db_xref="GI:16763981" /db_xref="GeneID:1252124" /translation="MQHRLTTEITHFLSELPEEERIAAINEFRMAIHSVSPFRDEPVD CVLWVKNDHISPNDYNPNNVAPPEKKLLLKSIEQDGFTQPIVVVKANTEEYEIVDGFH RHELGKGKAALKRRLKGYLPITCLDRERHERMAATIRHNRARGRHQIHAMSEIVRELS LLGWDESKIGQELGMDADEVLRLKQINGLQELFADRRFSRAWTVK" gene complement(666645..667897) /gene="ybdN" /locus_tag="STM0605" /db_xref="GeneID:1252125" CDS complement(666645..667880) /gene="ybdN" /locus_tag="STM0605" /note="similar to E. coli orf, hypothetical protein (AAC73703.1); Blastp hit to AAC73703.1 (406 aa), 82% identity in aa 1 - 406" /codon_start=1 /transl_table=11 /product="phosphoadenosine phosphosulfate reductase" /protein_id="NP_459597.1" /db_xref="GI:16763982" /db_xref="GeneID:1252125" /translation="MSVYKVPLEQNVLEAAQERIMWTLETLPRVCVSFSGGKDSGLML HLTATLARKMNKKIHVLFIDWEAQFSCTITYIESLREYYADVIERFYWVALPLTTQNS LSQYQPEWQCWQPGTDWVRQPPEDAITDPAFFSFYQHGMTFEQFVRDFADWFSEKRPA AMLVGIRSDESYNRFAAIANSHKLRFADDKPWTTLAPKGHTWYIYPIYDWKTADIWTW FAKTGKPCNPLYNLMYQAGVPPRYMRICEPFGPEQRQGLWLYHVIEPERWAAMCARVS GALSGGIYAGQDSHFYGHRKILKPDHLNWEEYALLLLHSMPEVTAEHYRNKIAVYLQW YKKKGMHTIPQTQHGDIGSRDIPSWRRICKVLLNNDYWCRALSFSPTKPKNYQRYNER MKAKRQEWGILCNTDSQPK" regulatory complement(666684..666689) /regulatory_class="ribosome_binding_site" /gene="ybdM" /locus_tag="STM0604" /note="putative RBS for ybdM; RegulonDB:STMS1H000931" regulatory complement(667892..667897) /regulatory_class="ribosome_binding_site" /gene="ybdN" /locus_tag="STM0605" /note="putative RBS for ybdN; RegulonDB:STMS1H000932" gene complement(668046..668961) /gene="ybdO" /locus_tag="STM0606" /db_xref="GeneID:1252126" CDS complement(668046..668948) /gene="ybdO" /locus_tag="STM0606" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC73704.1); Blastp hit to AAC73704.1 (300 aa), 54% identity in aa 1 - 298" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_459598.1" /db_xref="GI:16763983" /db_xref="GeneID:1252126" /translation="MANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQS LQRLRTQFNDPLFIRSGKGITPTVTGINLHYHLENNLNSLEQTINIMNQSSLKKKFII YSPQLLITQYVMKLVKYIRKDPQVEIEHHDILTTDELPEDLLAYRKADIVVSMAPLNN RSIVCTHFNRLECILVCSENHPRLGDTATIDEILQESFTQLVSRATGMKEYHSLMDDV LGERIIGFRSKSLMTIANSISSTELIGFLPQTFFDYYSSSIKLKKVTIPFTIAPIQFY LMYNRASLNNSGFAELIEHITKKH" regulatory complement(668956..668961) /regulatory_class="ribosome_binding_site" /gene="ybdO" /locus_tag="STM0606" /note="putative RBS for ybdO; RegulonDB:STMS1H000933" gene complement(669265..670022) /gene="dsbG" /locus_tag="STM0607" /db_xref="GeneID:1252127" CDS complement(669265..670011) /gene="dsbG" /locus_tag="STM0607" /note="similar to E. coli thiol:disulfide interchange protein (AAC73705.1); Blastp hit to AAC73705.1 (268 aa), 80% identity in aa 21 - 266" /codon_start=1 /transl_table=11 /product="thiol:disulfide interchange protein DsbG" /protein_id="NP_459599.1" /db_xref="GI:16763984" /db_xref="GeneID:1252127" /translation="MIKRTLLLAMLPILAHAEELPAPVKAIEKQGITILKSFEAPGGM KGYLGKYQDMGVTIYLTPDGKHAISGYMYNEKGENLSNALIEKEIYAPAGREMWQKME KASWILDGKKDAPVVLYVFADPFCPYCKQFWQQARPWVESGKVQLRTLLVGVIKPESP ATAAAILAAKDPAKTWHDYEASAGKMKLEVPASIPPAQMKVINQNQQLMDDLGANATP AIYYMNKDKILQQVVGLPEKAQLDAMMGQP" regulatory complement(670017..670022) /regulatory_class="ribosome_binding_site" /gene="dsbG" /locus_tag="STM0607" /note="putative RBS for dsbG; RegulonDB:STMS1H000934" protein_bind 670349..670395 /note="putative binding site for OxyR, RegulonDB: STMS1H000335" /bound_moiety="OxyR" gene 670350..671015 /gene="ahpC" /locus_tag="STM0608" /db_xref="GeneID:1252128" regulatory 670350..670358 /regulatory_class="minus_35_signal" /gene="ahpC" /locus_tag="STM0608" /note="putative -35_signal for ahpC; RegulonDB:STMLTH004689" regulatory 670374..670382 /regulatory_class="minus_10_signal" /gene="ahpC" /locus_tag="STM0608" /note="putative -10_signal for ahpC; RegulonDB:STMLTH004689" regulatory 670440..670445 /regulatory_class="ribosome_binding_site" /gene="ahpC" /locus_tag="STM0608" /note="putative RBS for ahpC; RegulonDB:STMS1H000935" CDS 670452..671015 /gene="ahpC" /locus_tag="STM0608" /note="detoxification of hydroperoxides; alkyl hydroperoxide reductase C22 protein. (SW:AHPC_SALTY)" /codon_start=1 /transl_table=11 /product="peroxiredoxin" /protein_id="NP_459600.1" /db_xref="GI:16763985" /db_xref="GeneID:1252128" /translation="MSLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFT FVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTG ALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAA HPGEVCPAKWKEGEATLAPSLDLVGKI" gene 671245..672822 /gene="ahpF" /locus_tag="STM0609" /db_xref="GeneID:1252129" regulatory 671245..671250 /regulatory_class="ribosome_binding_site" /gene="ahpF" /locus_tag="STM0609" /note="putative RBS for ahpF; RegulonDB:STMS1H000936" CDS 671257..672822 /gene="ahpF" /locus_tag="STM0609" /note="detoxification of hydroperoxides; alkyl hydroperoxide reductase subunit F. (SW:AHPF_SALTY)" /codon_start=1 /transl_table=11 /product="alkyl hydroperoxide reductase subunit F" /protein_id="NP_459601.1" /db_xref="GI:16763986" /db_xref="GeneID:1252129" /translation="MLDTNMKTQLRAYLEKLTKPVELIATLDDSAKSAEIKELLAEIA ELSDKVTFKEDNTLPVRKPSFLITNPGSQQGPRFAGSPLGHEFTSLVLALLWTGGHPS KEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQ NEITERNVMGVPAVFVNGKEFGQGRMTLTEIVAKVDTGAEKRAAEALNKRDAYDVLIV GSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAH VSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGE DQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA DQVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIG LLPNTHWLEGALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYKQIIIATGEGAKAS LSAFDYLIRTKIA" gene 673148..673714 /locus_tag="STM0610" /db_xref="GeneID:1252130" regulatory 673148..673153 /regulatory_class="ribosome_binding_site" /locus_tag="STM0610" /note="putative RBS for STM0610; RegulonDB:STMS1H000937" CDS 673154..673714 /locus_tag="STM0610" /note="similar to E. coli putative oxidoreductase component (AAC74663.1); Blastp hit to AAC74663.1 (207 aa), 30% identity in aa 78 - 196" /codon_start=1 /transl_table=11 /product="molecular chaperone" /protein_id="NP_459602.1" /db_xref="GI:16763987" /db_xref="GeneID:1252130" /translation="MDSIYESLTELEKTGLTLRDFFNSHDSRSLKSAYVRLNPTAAVN LTDRAWLEAEYDFNALFVGPGKLLAAPFASVYLEDDALVMGKATLEIRDFMAALGLSV NQESNIPDDHISCVLELTTLLLANTRQTSPYRSTLTQYINNYLTKWVPLYIEKIKTHA QTTTLYTVADILFYWLAELKREYQYE" gene 673695..675986 /locus_tag="STM0611" /db_xref="GeneID:1252131" regulatory 673695..673700 /regulatory_class="ribosome_binding_site" /locus_tag="STM0610" /note="putative RBS for STM0611; RegulonDB:STMS1H000938" CDS 673707..675986 /locus_tag="STM0611" /note="similar to E. coli putative oxidoreductase, major subunit (AAC74659.1); Blastp hit to AAC74659.1 (808 aa), 31% identity in aa 10 - 314, 26% identity in aa 298 - 673, 36% identity in aa 636 - 765, 34% identity in aa 489 - 517" /codon_start=1 /transl_table=11 /product="DMSO reductase" /protein_id="NP_459603.1" /db_xref="GI:16763988" /db_xref="GeneID:1252131" /translation="MSNETGHLNRRSFLKGIVALGAVAALPGGLLTSRCALAQPPVPF NPKTYKIYRNACPRNCYDTCSLKTWVKDGVITFVEGAPESTFTHGTPCVKGLSYPRRV YSPDRIKYPMTQDVRGSGNWRRISWEEAMQRIAAKMLEIKKKDGSMLGLALTKYSGKF GVLNYAVEGMMSSLGYTTRFAGTPCWPAGIDAQNYDMGDMWCNDPEDMVKAKYIIIWG ANPAWCSMHSMKYIYQAREKGAKVVVIDPLLSQTAAKADLYLRVRPGSDGALALGMAR HLVDKGLVDQDFVNNDAHGYPEFEAYLRNHVTVEWAAEICGLSADVIRQLAEEFTAVK PATVWIGYGMQRHVNGGANVRAIDAFVAMSGNIGVEGGGARYGHLHTWGFNYNAMLQK PPVGAIGIPGAAGTTSEFGAAAGSDAVQYSDRSLNINQTAQGILEANDPPVRMLWVAC KNPFAQDFDRSKMKKAFEKLEMVVCADQFFNETVQHADIVLPVTTAFEEWNVDASYWH YWLSINQPAIKPMYEAKCDLEIATMLSRTINKMAPGSCTFPQEFDHKRWLDQEFNDGM AKMFGISSWDDLLDGPKKAILPSSAAWYDRKFKTPSGKYEFKSELAEKNGHTALPEYK PEAESKLPFHLFTPHVQFGLHSQFINLDWMQVFYPEPFVYIHPSSAKKKGISENDLVK VFNGTGEVELRAKVTTNVPEDFLVMYEAWFPKRQYNVQNVVADTPADMGLMKTGAPGA AIHSQFADVVLIGKGESVA" gene 675977..676540 /locus_tag="STM0612" /db_xref="GeneID:1252132" regulatory 675977..675982 /regulatory_class="ribosome_binding_site" /locus_tag="STM0612" /note="putative RBS for STM0612; RegulonDB:STMS1H000939" CDS 675983..676540 /locus_tag="STM0612" /note="similar to E. coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); Blastp hit to AAC73981.1 (205 aa), 41% identity in aa 7 - 156" /codon_start=1 /transl_table=11 /product="DMSO reductase" /protein_id="NP_459604.1" /db_xref="GI:16763989" /db_xref="GeneID:1252132" /translation="MRRAFLVNSDKCIGCRGCAMACKSFNQLEPDRFWRYVYPLDKDI YPHEERAFYSLACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYG APRFNEETRKAEKCSMCYERLDIGMNPACVNACPVGALSIIDLDADPVPDNAVQYPPG FPHMPQLNPGTRFILARQPKQPEDK" gene 676533..677307 /locus_tag="STM0613" /db_xref="GeneID:1252133" regulatory 676533..676538 /regulatory_class="ribosome_binding_site" /locus_tag="STM0612" /note="putative RBS for STM0613; RegulonDB:STMS1H000940" CDS 676540..677307 /locus_tag="STM0613" /note="similar to E. coli putative DMSO reductase anchor subunit (AAC74662.1); Blastp hit to AAC74662.1 (284 aa), 30% identity in aa 6 - 200" /codon_start=1 /transl_table=11 /product="hydrogenase" /protein_id="NP_459605.1" /db_xref="GI:16763990" /db_xref="GeneID:1252133" /translation="MEKYELPLVFFTVLSQMSVGMALVLTWRTLRGEVEGQRFYWLAT GLVLALASIAAILHLAHPDRAYDALINLRHAWLSREILGATLFGAAVGVTFLAKGHKA MALIASVFGVLLVAVQGMTYAAPAMVAIANGFTMLLFFITVWVMGCAAIPLLKLRPAV PALRQGIVVCIAVLIAAPLVWLSGGTVMQMTARSWLASPFYLASLVCLALAFVASRHG DSRPKRLFVLLFVGVFLSRLVFFGDTVSTIVNIGHLY" gene complement(677375..677818) /gene="ybdQ" /locus_tag="STM0614" /db_xref="GeneID:1252134" CDS complement(677375..677803) /gene="ybdQ" /locus_tag="STM0614" /note="similar to E. coli orf, hypothetical protein (AAC73708.1); Blastp hit to AAC73708.1 (142 aa), 89% identity in aa 1 - 142" /codon_start=1 /transl_table=11 /product="universal stress protein UspG" /protein_id="NP_459606.1" /db_xref="GI:16763991" /db_xref="GeneID:1252134" /translation="MYKTIIMPVDVFEMELSDKAIRHAEFLAQQDGVIHLLHVLPGSA SMSLHRFAADVRRFEEHLQHEAETRLQTMVGHFSIDPSRIKTHVRFGSVRDVVNEMGE ELDADVVVIGSRNPSITTHLLGSNASSVVRHATLPVLVVR" regulatory complement(677813..677818) /regulatory_class="ribosome_binding_site" /gene="ybdQ" /locus_tag="STM0614" /note="putative RBS for ybdQ; RegulonDB:STMS1H000941" gene 678015..679264 /gene="ybdR" /locus_tag="STM0615" /db_xref="GeneID:1252135" regulatory 678015..678020 /regulatory_class="ribosome_binding_site" /gene="ybdR" /locus_tag="STM0615" /note="putative RBS for ybdR; RegulonDB:STMS1H000942" CDS 678026..679264 /gene="ybdR" /locus_tag="STM0615" /note="similar to E. coli putative oxidoreductase (AAC73709.1); Blastp hit to AAC73709.1 (412 aa), 91% identity in aa 1 - 412" /codon_start=1 /transl_table=11 /product="glutathione-dependent formaldehyde dehydrogenase" /protein_id="NP_459607.1" /db_xref="GI:16763992" /db_xref="GeneID:1252135" /translation="MKALTYHGPHHVKVENVPDPGIEQPDDIILRVTATAICGSDLHL YRGKIPQVKHGDIFGHEFMGEVVETGHDVKNIRKGDRVVIPFVIACGDCFFCRLQQYS ACENTNDGHGAAMNKKQIPPPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPLL SDDKALFLSDILPTAWQAAKNAQIQQGFSVAVFGAGPVGLLTIACARLLGAEQIFVVD HHAWRLRFAEERYGAIPINFDDENDPAEKIIEQTAGHRGVDAVIDAVGFEAKGSLTET VLTNLKLEGSSGKALRQCIAAVRRGGVVSVPGVYAGFIHGFLFGDAFDKGLTFKMGQT HVHAWLGELLPLIEKGLLKPEEIVTHYMPFEEAARGYEIFEKREEECRKVILVPGATS AQAAQKQATGVVNPMPGGVV" gene complement(679347..679769) /gene="rnk" /locus_tag="STM0616" /db_xref="GeneID:1252136" CDS complement(679347..679757) /gene="rnk" /locus_tag="STM0616" /note="similar to E. coli regulator of nucleoside diphosphate kinase (AAC73711.1); Blastp hit to AAC73711.1 (136 aa), 91% identity in aa 1 - 135" /codon_start=1 /transl_table=11 /product="nucleoside diphosphate kinase regulator" /protein_id="NP_459608.1" /db_xref="GI:16763993" /db_xref="GeneID:1252136" /translation="MSRPTIIINDLDAERIDRLLEQPAYADLPIADALNAELDRAQMC SPQEMPNDVVTMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLR VGDTIHWELPGGASTHLEVLELEYQPEAAGDFLR" regulatory complement(679764..679769) /regulatory_class="ribosome_binding_site" /gene="rnk" /locus_tag="STM0616" /note="putative RBS for rnk; RegulonDB:STMS1H000943" gene complement(679992..680798) /gene="rna" /locus_tag="STM0617" /db_xref="GeneID:1252137" CDS complement(679992..680798) /gene="rna" /locus_tag="STM0617" /EC_number="3.1.27.6" /note="similar to E. coli RNase I, cleaves phosphodiester bond between any two nucleotides (AAC73712.1); Blastp hit to AAC73712.1 (268 aa), 73% identity in aa 1 - 268" /codon_start=1 /transl_table=11 /product="ribonuclease I" /protein_id="NP_459609.1" /db_xref="GI:16763994" /db_xref="GeneID:1252137" /translation="MNTIWHYSPLLAALLTPIFAANADELQAQQYGDFTDYVLALSWQ TGFCQSQHERRHREPDECRLQKEPANKADFLTVHGLWPGLPKSIAARGVDQRRWQRFG CATRPIPNLPEVKASRKCSASAPGLSPDIAAALKEVMPGAGGNSCLERYEYAKHGACF GFDPNAYFGTMIRLDKAIKDSALGQFLTDNYGKTVSRAEFDSVVAQMWGQDNVKAVKV NCHGNPAYLTEIQFSLKASMINAPLSSASFLPQPHPGNCGKQFIIDKAGY" gene complement(680908..682385) /gene="citT" /locus_tag="STM0618" /db_xref="GeneID:1252138" CDS complement(680908..682371) /gene="citT" /locus_tag="STM0618" /note="similar to E. coli putative a membrane protein (AAC73713.1); Blastp hit to AAC73713.1 (487 aa), 94% identity in aa 1 - 487" /codon_start=1 /transl_table=11 /product="anion permease" /protein_id="NP_459610.1" /db_xref="GI:16763995" /db_xref="GeneID:1252138" /translation="MSLSKDNIWKLLAPLVVMGVMLLIPVPDGMPPQAWHYFAVFVAM IVGMILEPIPATAISFIAVTICVIGSNYLLFDASELADPAFKASKQALKWGLAGFSST TVWLVFGAFIFALGYEVTGLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNT ARTGGTVFPVIKNLPPLFKSFPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVL GLEFVSKIAGVQISWLQWFLSFLPVGIILLIVAPWLSYVLYKPEVTHSAEVAAWAGGE LKNMGRLSRKEWTLIGLVLLSLGLWVFGGKIINATAVGLLAVSLMLALHVVPWKDITR YNSAWNTLVNLATLVVMANGLTRSGFIDWFANTMSTHLEGFSPDATVIVLVLVFYFAH YLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYATGPGVIIY GCGYVKSRDYWRLGAIFGVIYIAMLLLVGWPILAMWN" regulatory complement(682380..682385) /regulatory_class="ribosome_binding_site" /gene="citT" /locus_tag="STM0618" /note="putative RBS for citT; RegulonDB:STMS1H000944" gene complement(682409..683318) /gene="citG" /locus_tag="STM0619" /db_xref="GeneID:1252139" CDS complement(682409..683305) /gene="citG" /locus_tag="STM0619" /note="similar to E. coli orf, hypothetical protein (AAC73714.1); Blastp hit to AAC73714.1 (292 aa), 77% identity in aa 1 - 292" /codon_start=1 /transl_table=11 /product="triphosphoribosyl-dephospho-CoA synthase" /protein_id="NP_459611.1" /db_xref="GI:16763996" /db_xref="GeneID:1252139" /translation="MMPIPANPTNASIQPQSLYDVWADLAWRAMLTEVNLSPKPGLVD RLNCGAHKDMALADFHRSAEAIRHWLPRFMEYGASCTRLPPESVLAGLRPLGMACEAA MFRATAGVNTHKGSIFSLGLLCAAIGRLYQLRQPIAAETLCATAADFCRGLTTRELRQ NNLQLTAGQRLYQQLGLTGARGEAEAGYPLVIRHALPHYRALLAQGRDPELALLDTLL LLMSLNGDTNVASRGGADGLRWLQQQAAVLLQQGGIRTPDDLVYLHRFDQQCIERNLS PGGSADLLIVTWFLAQISQVNH" gene complement(683277..683846) /gene="citX" /locus_tag="STM0620" /db_xref="GeneID:1252140" CDS complement(683277..683828) /gene="citX" /locus_tag="STM0620" /note="similar to E. coli orf, hypothetical protein (AAC73715.1); Blastp hit to AAC73715.1 (183 aa), 75% identity in aa 1 - 179" /codon_start=1 /transl_table=11 /product="2-(5'-triphosphoribosyl)-3'-dephospho CoA synthase" /protein_id="NP_459612.1" /db_xref="GI:16763997" /db_xref="GeneID:1252140" /translation="MRLFPELATCHDVSIPELLASRDERQARQRAWLTRHATPLVSFT VVAPGPIKDSALTRRIFNHGVTALHTLAEEYGWTIREQAALASASGPEGLLAIDAPAQ ALKQATIALEQRYPLGRLWDIDVLTAEGEILSRRHFALPARRCLLCGQSAAECARGKT HALTDLLIHMEALLHDADSRQPD" regulatory complement(683313..683318) /regulatory_class="ribosome_binding_site" /gene="citX" /locus_tag="STM0620" /note="putative RBS for citG; RegulonDB:STMS1H000945" gene complement(683832..685372) /gene="citF" /locus_tag="STM0621" /db_xref="GeneID:1252141" CDS complement(683832..685361) /gene="citF" /locus_tag="STM0621" /EC_number="2.8.3.10" /EC_number="4.1.3.34" /EC_number="4.1.3.6" /note="bifunctional; similar to E. coli citrate lyase alpha chain (AAC73716.1); Blastp hit to AAC73716.1 (510 aa), 88% identity in aa 1 - 510" /codon_start=1 /transl_table=11 /product="citrate lyase subunit alpha" /protein_id="NP_459613.1" /db_xref="GI:16763998" /db_xref="GeneID:1252141" /translation="MTQKNESQRQDRVAAWSRHAESELSAYQSAAKLDLQAQKPRDHK LCASLEEAIRRSGLRDGMTVSFHHAFRGGDLTINLVMETIAKMGFKNLTLASSSLSDC HAPLVEHIRNGVVSRIYTSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSGELNID VAFLGVPSCDEFGNANGYTGKACCGSLGYAMVDADSAKQVVMLTEQLLPYPHNPASIA QDQVDLIVQIEEVGDANKIGAGATRMTTNPRELLIARSAAEVIAHSGYFNEGFSLQTG TGGASLAVTRFLEDKMRSRNIVANFALGGITATMVDLHEKGLIRKLLDVQSFDRNAAQ SLARNPNHIEISANQYANWGSKGASVDRLDVVVLSALEVDTHFNVNVLTGSDGVLRGA SGGHCDTAVAAALSIIVAPLVRGRIPTLVDNVTTCVTPGSSVDILVTDHGIAVNPARP ELAERLKAAGMKVVSIEWLRERAQLLTGQPRPIEFTDRVIAVVRYRDGSVIDVVHQVK E" regulatory complement(683841..683846) /regulatory_class="ribosome_binding_site" /gene="citX" /locus_tag="STM0620" /note="putative RBS for citX; RegulonDB:STMS1H000946" regulatory complement(685367..685372) /regulatory_class="ribosome_binding_site" /gene="citF" /locus_tag="STM0621" /note="putative RBS for citF; RegulonDB:STMS1H000947" gene complement(685371..686290) /gene="citE" /locus_tag="STM0622" /db_xref="GeneID:1252142" CDS complement(685371..686279) /gene="citE" /locus_tag="STM0622" /EC_number="2.8.3.10" /EC_number="4.1.3.34" /EC_number="4.1.3.6" /note="similar to E. coli citrate lyase beta chain (acyl lyase subunit) (AAC73717.1); Blastp hit to AAC73717.1 (307 aa), 95% identity in aa 6 - 307" /codon_start=1 /transl_table=11 /product="citrate (pro-3S)-lyase subunit beta" /protein_id="NP_459614.1" /db_xref="GI:16763999" /db_xref="GeneID:1252142" /translation="MISASLQQRKTRTRRSMLFVPGANAAMVSNSFIYPADALMFDLE DSVALREKDAARRLVYHALQHPLYRDVETIVRVNALDSEWGVNDLEAVVRGGADVVRL PKTDTAQDVIDIENEILRIENACGREPGSTGLLAAVESPLGITRAVEIAHASERLIGI ALGAEDYVRNLRTERSPEGTELLFARCAILQAARSAGIQAFDTVYSDANNEAGFLQEA AHIKQLGFDGKSLINPRQIELLHNLYAPTRKEVAHARLVVEAAEAAAREGLGVVSLNG KMVDSPVIERARLVLSRAELSGIREE" gene complement(686276..686582) /gene="citD" /locus_tag="STM0623" /db_xref="GeneID:1252143" CDS complement(686276..686572) /gene="citD" /locus_tag="STM0623" /note="similar to E. coli citrate lyase acyl carrier protein (gamma chain) (AAC73718.1); Blastp hit to AAC73718.1 (98 aa), 90% identity in aa 1 - 98" /codon_start=1 /transl_table=11 /product="citrate lyase acyl carrier protein" /protein_id="NP_459615.1" /db_xref="GI:16764000" /db_xref="GeneID:1252143" /translation="MKINQLAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGEA IRATILEVLSRYDVRGVQLNVDDKGALDCILRARLETLLARASGIAALPWEDRQ" regulatory complement(686285..686290) /regulatory_class="ribosome_binding_site" /gene="citD" /locus_tag="STM0623" /note="putative RBS for citE; RegulonDB:STMS1H000948" gene complement(686569..687661) /gene="citC" /locus_tag="STM0624" /db_xref="GeneID:1252144" CDS complement(686569..687645) /gene="citC" /locus_tag="STM0624" /EC_number="6.2.1.22" /note="similar to E. coli citrate lyase synthetase (citrate (pro-3S)-lyase ligase (AAC73719.1); Blastp hit to AAC73719.1 (381 aa), 86% identity in aa 30 - 380" /codon_start=1 /transl_table=11 /product="[citrate (pro-3S)-lyase] ligase" /protein_id="NP_459616.1" /db_xref="GI:16764001" /db_xref="GeneID:1252144" /translation="MFGNNVFTRVKRSENKKMAEIAHFLKENDLSVDTTVEVFITVSR DDRLIACGGIAGNIIKCVAISESVRGEGLALTLATELINLAWERHCTHLFIYTKTEYE ALFKQCSFSTIASVPGVMVLMENSATRLKRYAESLATLRHEGKKIGCIVMNANPFTNG HRYLIQQAAAQCDWLHLFLVKEDTSRFPYEDRLDLVLKGTTDIPRLTVHRGSEYIISR ATFPCYFIKEQSVINHCYTEIDLKIFRQYLAPALGITHRFVGTEPFCTVTAQYNLDMR FWLETPTLPAPPITLVEIERLCFQETPISASWVRKLLVKHDLTAIAPLVPDATLRYLQ GMVERHPGSAAARQKSPVLATGEK" regulatory complement(686577..686582) /regulatory_class="ribosome_binding_site" /gene="citD" /locus_tag="STM0623" /note="putative RBS for citD; RegulonDB:STMS1H000949" regulatory complement(687656..687661) /regulatory_class="ribosome_binding_site" /gene="citC" /locus_tag="STM0624" /note="putative RBS for citC; RegulonDB:STMS1H000950" gene 688019..689691 /gene="dpiB" /locus_tag="STM0625" /db_xref="GeneID:1252145" regulatory 688019..688024 /regulatory_class="ribosome_binding_site" /gene="dpiB" /locus_tag="STM0625" /note="putative RBS for dpiB; RegulonDB:STMS1H000951" CDS 688030..689691 /gene="dpiB" /locus_tag="STM0625" /EC_number="2.7.3.-" /note="regulation of cit operon and plasmid inheritance genes; similar to E. coli putative sensor-type protein (AAC73720.1); Blastp hit to AAC73720.1 (552 aa), 86% identity in aa 2 - 552" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="NP_459617.1" /db_xref="GI:16764002" /db_xref="GeneID:1252145" /translation="MSCQKNKKLFPFFRQLAFPLRIFLLILVVSVFIVAALAQYLSAS FEDYLASHVRDMAMNQAKIIASNDSIIAAVKNRDYKRLAIIANKLQRGTDFDYVVIGD RHSIRLYHPNPEKIGYPMQFTKPGALERGESYFITGKGSIGMAMRAKTPIFDNEGNVI GVVSIGYLVSKIDSWRLDFLLPMAGVFVLLLVVLMLLSWFFAAHIRRQMLGMEPKQIA RVVRQQEALFSSVYEGLIAVDPEGHITAINRNARKMLGLPSPGRQWLGKLIAEVVNPA DFFTCQIAERRQDVMANFNGLSVIANREAIRSGEELLGAIISFRSKDEIATLNAQLTQ IKQYVESLRTLRHEHLNWMSTLNGLLQMKEYDRVREMVQGESQAQQQLIDSLRGAFAD RQVAGLLFGKVQRARELGLKMVIVPGSQLHQLPEGLDSTEFAAIVGNLLDNAFEASLR TQEGDKTIELFLSDEGDEVVIEVADQGCGVPEALREKIFEQGVSTRTDEPGEHGIGLY LIASYVGRCGGVITLEDNDPCGTLFSLFLPKVKKNDDRTINPIDR" gene 689647..690340 /gene="dpiA" /locus_tag="STM0626" /db_xref="GeneID:1252146" regulatory 689647..689652 /regulatory_class="ribosome_binding_site" /gene="dpiA" /locus_tag="STM0626" /note="putative RBS for dpiA; RegulonDB:STMS1H000952" CDS 689660..690340 /gene="dpiA" /locus_tag="STM0626" /note="transcriptional regulation of cit operon (citrate fermentation) genes and of plasmid inheritance genes (OmpR family); similar to E. coli sequence similarity to Shigella regulator (AAC73721.1); Blastp hit to AAC73721.1 (226 aa), 84% identity in aa 1 - 226" /codon_start=1 /transl_table=11 /product="response regulator" /protein_id="NP_459618.1" /db_xref="GI:16764003" /db_xref="GeneID:1252146" /translation="MTEPLTLLIVEDETLLAEMHAEYIRHIPSFNQIWLAGNLAQARM MIDRFKPGLILLDNYLPDGKGITLLHELMQSRYPGGVVFTTAASDMETVAEAVRSGAF DYLVKPIAYERLGQTLTRYQQRRRMLASADSASQKQIDEMFNAYARGEPKGDLPTGID ALTLNAVMRLFADPTVRHTAETVAQALTISRTTSRRYLEYCASQHLIVAEIIHGKVGR PQRIYHGG" gene complement(690394..691790) /gene="dcuC" /locus_tag="STM0627" /db_xref="GeneID:1252147" CDS complement(690394..691779) /gene="dcuC" /locus_tag="STM0627" /note="similar to E. coli transport of dicarboxylates (AAC73722.1); Blastp hit to AAC73722.1 (461 aa), 92% identity in aa 1 - 460" /codon_start=1 /transl_table=11 /product="anaerobic C4-dicarboxylate transporter DcuC" /protein_id="NP_459619.1" /db_xref="GI:16764004" /db_xref="GeneID:1252147" /translation="MLTVIELLIGVVVIVGVARYIIKGYSATGVLFVGGLALLIISAL MGHKVLPASETSTGYTATDIVEYIKILLMSRGGDLGMMIMMLCGFAAYMTHIGANDMV VKLASKPLQYINSPYLLMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGISRG AAAAICASPAAIILSPTSGDVVLAAKAAEMPLIDFAFKTTLPISIAAIIGMAIAHFFW QRYLDKKENISHEMLDVAEITTTAPAFYALLPFTPIIGVLIFDGKWGPQLHIITILVI CMLLAAVLEFVRGFNTQNVFSGLEVAYRGMADAFAGVVMLLVAAGVFAQGLSTIGFIQ SLISIATSFGSASIILMLVLVILTMLAAMTTGSGNAPFYAFVEMIPKLAHSSGINPAY LSIPMLQASNLGRTISPVSGVVVAVAGMAKISPFEVVKRTSVPVIVGLLIVIIATEIM VPGASSSVTGG" regulatory complement(691785..691790) /regulatory_class="ribosome_binding_site" /gene="dcuC" /locus_tag="STM0627" /note="putative RBS for dcuC; RegulonDB:STMS1H000953" gene 692158..692730 /gene="pagP" /locus_tag="STM0628" /db_xref="GeneID:1252148" CDS 692158..692730 /gene="pagP" /locus_tag="STM0628" /note="PagP (gi|3789781)" /codon_start=1 /transl_table=11 /product="PhoPQ-activated gene" /protein_id="NP_459620.1" /db_xref="GI:16764005" /db_xref="GeneID:1252148" /translation="MYVAMIIRKYFLIIALLLMPWLAIPSVSAADKGGFNTFTDNVAE TWRQPEHYDLYVPAITWHARFAYDKEKTDRYNERPWGVGFGQSRWDDKGNWHGLYMMA FKDSFNKWEPIGGYGWEKTWRPLEDDNFRLGLGFTAGVTARDNWNYIPIPVLLPLASI GYGPATFQMTYIPGSYNNGNVYFAWMRFQF" gene 692906..693127 /gene="cspE" /locus_tag="STM0629" /db_xref="GeneID:1252149" regulatory 692906..692911 /regulatory_class="ribosome_binding_site" /gene="cspE" /locus_tag="STM0629" /note="putative RBS for cspE; RegulonDB:STMS1H000954" CDS 692918..693127 /gene="cspE" /locus_tag="STM0629" /note="similar to E. coli cold shock protein (AAC73724.1); Blastp hit to AAC73724.1 (69 aa), 98% identity in aa 1 - 69" /codon_start=1 /transl_table=11 /product="cold-shock protein" /protein_id="NP_459621.1" /db_xref="GI:16764006" /db_xref="GeneID:1252149" /translation="MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTL AEGQRVEFEITNGAKGPSAANVTAL" gene complement(693185..693580) /gene="crcB" /locus_tag="STM0630" /db_xref="GeneID:1252150" CDS complement(693185..693568) /gene="crcB" /locus_tag="STM0630" /note="similar to E. coli orf, hypothetical protein (AAC73725.1); Blastp hit to AAC73725.1 (127 aa), 90% identity in aa 1 - 126" /codon_start=1 /transl_table=11 /product="fluoride ion transporter CrcB" /protein_id="NP_459622.1" /db_xref="GI:16764007" /db_xref="GeneID:1252150" /translation="MLQLLLAVFIGGGTGSVARWMLSMRFNPLHQAIPIGTLTANLLG AFIIGMGFAWFNRMTHIDPMWKVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLN VLINLLGSFAMTALAFWLFSAAAAR" regulatory complement(693575..693580) /regulatory_class="ribosome_binding_site" /gene="crcB" /locus_tag="STM0630" /note="putative RBS for crcB; RegulonDB:STMS1H000955" gene 693642..694447 /gene="ybeM" /locus_tag="STM0631" /db_xref="GeneID:1252151" regulatory 693642..693647 /regulatory_class="ribosome_binding_site" /gene="ybeM" /locus_tag="STM0631" /note="putative RBS for ybeM; RegulonDB:STMS1H000956" CDS 693659..694447 /gene="ybeM" /locus_tag="STM0631" /note="similar to E. coli putative amidase (AAC73727.1); Blastp hit to AAC73727.1 (187 aa), 77% identity in aa 2 - 187" /codon_start=1 /transl_table=11 /product="putative hydrolase" /protein_id="NP_459623.1" /db_xref="GI:16764008" /db_xref="GeneID:1252151" /translation="MFVAAGQFVVSSVWEENAQVCVSLMAQAAGRGVSLLVLPEGILA RDDIDLDLPIRAAQPLDGAFMTRLLEESAHNNMTTIFTILVPSTPGRAVNMLVALRAG HIVARYAKLHLYDAFSMQESQSIDAGTVIAPVLDVEGVKVGLMTCYDLRFPDMALALA LQGADVLALPTGWVRGPLKEQQWSTLLAARALDTTSYMIAAGECGNRNIGQSRIIDPL GVTIAAAADRPALIVAEIFRERIDQVREQLPLLQQRRFAPPQLL" gene 694567..694779 /gene="ybeC" /locus_tag="STM0632" /db_xref="GeneID:1252152" regulatory 694567..694572 /regulatory_class="ribosome_binding_site" /gene="ybeC" /locus_tag="STM0632" /note="putative RBS for ybeC; RegulonDB:STMS1H000957" CDS 694576..694779 /gene="ybeC" /locus_tag="STM0632" /note="sec-independent protein translocase protein TATE. (SW:TATE_SALTY)" /codon_start=1 /transl_table=11 /product="Sec-independent protein translocase TatE" /protein_id="NP_459624.1" /db_xref="GI:16764009" /db_xref="GeneID:1252152" /translation="MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGTAIKGFKKAMN DEDAGVKKDVDGSVQAEKLSHKE" gene complement(694865..695846) /gene="lipA" /locus_tag="STM0633" /db_xref="GeneID:1252153" CDS complement(694865..695830) /gene="lipA" /locus_tag="STM0633" /note="similar to E. coli lipoate synthesis, sulfur insertion? (AAC73729.1); Blastp hit to AAC73729.1 (321 aa), 97% identity in aa 1 - 321" /codon_start=1 /transl_table=11 /product="lipoyl synthase" /protein_id="NP_459625.1" /db_xref="GI:16764010" /db_xref="GeneID:1252153" /translation="MSKPIVMERGVKYRDADKMALIPVKNVVTERDALLRKPEWMKIK LPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCD VAHGRPVAPDAEEPQKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIRAKS PEIKIETLVPDFRGRMDRALDILNATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLL ERFKEAHPEIPTKSGLMVGLGETNAEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQ RYVSPEEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK" regulatory complement(695841..695846) /regulatory_class="ribosome_binding_site" /gene="lipA" /locus_tag="STM0633" /note="putative RBS for lipA; RegulonDB:STMS1H000958" gene complement(696036..697002) /gene="ybeF" /locus_tag="STM0634" /db_xref="GeneID:1252154" CDS complement(696036..696989) /gene="ybeF" /locus_tag="STM0634" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC73730.1); Blastp hit to AAC73730.1 (266 aa), 68% identity in aa 1 - 266" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_459626.1" /db_xref="GI:16764011" /db_xref="GeneID:1252154" /translation="MSDNNQAERQPADQHLQDKPQIFRTLRNIDLNLLTIFEAVYVHK GIVNAAKILNLTPSAISQSIQKLRTIFPDPLFIRKGQGVTPTTYATHLHEYISQGLES ILGALDLTGSYDKQRTITIGTTPSVGALVMPIIYQAIRPRYPQLLLRNIPVDDAESQL SQFQTDLIINTHSYNNRSIQHHVLFSDTLEIVCRQHHPCLANAITEERLNSADHTFLM LEGQHLSLLRQRLQETFPDQQISFSSYNIFTIASLIASSDLLGLMPTRFYDLFSRCWP LERLPYAPVNSEQVEFSLHYNKLSLRDPVLENVIDIIREAF" regulatory complement(696997..697002) /regulatory_class="ribosome_binding_site" /gene="ybeF" /locus_tag="STM0634" /note="putative RBS for ybeF; RegulonDB:STMS1H000959" gene complement(697291..697872) /gene="lipB" /locus_tag="STM0635" /db_xref="GeneID:1252155" CDS complement(697291..697866) /gene="lipB" /locus_tag="STM0635" /EC_number="6.-.-.-" /note="similar to E. coli protein of lipoate biosynthesis (AAC73731.1); Blastp hit to AAC73731.1 (191 aa), 91% identity in aa 1 - 191" /codon_start=1 /transl_table=11 /product="putative ligase in lipoate biosynthesis" /protein_id="NP_459627.3" /db_xref="GI:1109557592" /db_xref="GeneID:1252155" /translation="MHNFTDMRDENSHDEIWLVEHYPVFTQGQAGKAEHILMPGDIPV VQSDRGGQVTYHGPGQQVMYVLLNLKRRKLGVRDLVTLLEQTVVNTLAEIGIEAHPRA DAPGVYVGEKKICSLGLRIRRGCSFHGLALNVNMDLSPFLRINPCGYAGMEMAKITQW KEDATTDNIAPRLLANILALLNNPPYEYIAA" regulatory complement(697867..697872) /regulatory_class="ribosome_binding_site" /gene="lipB" /locus_tag="STM0635" /note="putative RBS for lipB; RegulonDB:STMS1H000960" gene complement(698032..698306) /gene="ybeD" /locus_tag="STM0636" /db_xref="GeneID:1252156" CDS complement(698032..698295) /gene="ybeD" /locus_tag="STM0636" /note="similar to E. coli orf, hypothetical protein (AAC73732.1); Blastp hit to AAC73732.1 (87 aa), 97% identity in aa 1 - 87" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459628.1" /db_xref="GI:16764013" /db_xref="GeneID:1252156" /translation="MKTKLNELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYS PTVKPSSKGNYHSVSITINATHIEQVETLYEELGNIDIVRMVL" regulatory complement(698301..698306) /regulatory_class="ribosome_binding_site" /gene="ybeD" /locus_tag="STM0636" /note="putative RBS for ybeD; RegulonDB:STMS1H000961" gene complement(698404..699615) /gene="dacA" /locus_tag="STM0637" /db_xref="GeneID:1252157" CDS complement(698404..699615) /gene="dacA" /locus_tag="STM0637" /EC_number="3.4.16.4" /note="similar to E. coli D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 (AAC73733.1); Blastp hit to AAC73733.1 (403 aa), 95% identity in aa 1 - 403" /codon_start=1 /transl_table=11 /product="serine-type D-Ala-D-Ala carboxypeptidase" /protein_id="NP_459629.1" /db_xref="GI:16764014" /db_xref="GeneID:1252157" /translation="MKTTFSARFMQRMALTTALCAAFISTAHADDLNIKTMIPGVPQI DAESYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGN DAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVG LMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFT FNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKG RETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGNTDRASLGVDKDVYLTIPRGRM KDLKASYVLNTAELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFFGKIID YIKLMFHHWFG" gene complement(699755..700912) /gene="rlpA" /locus_tag="STM0638" /db_xref="GeneID:1252158" CDS complement(699755..700900) /gene="rlpA" /locus_tag="STM0638" /note="similar to E. coli a minor lipoprotein (AAC73734.1); Blastp hit to AAC73734.1 (362 aa), 68% identity in aa 1 - 362" /codon_start=1 /transl_table=11 /product="rare lipoprotein A" /protein_id="NP_459630.1" /db_xref="GI:16764015" /db_xref="GeneID:1252158" /translation="MRKQLPVICVAAGIVLLAACTNDGGQQQTTVAPQPAVCNGPTVE ISGAEPRYEPLNPTANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEM FDPMQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGTDRVISLSRAAADRLNT SNNTKVRIDPIIVAPDGSLSGPGMACTTVAKQTYALPPRPDLSGGMGSASSAPAQPQG DVLPVSNSTLKSDDTTGAPVSSSGFLGAPTTLAPGVLESNEPTPAPQPAPVSAPVAAP ATAPATATPVSAPAAAAPVSAPVSAPAAAASGRFVVQVGAVSDQTRAQQYQQRLSQQF SVPGRVIQNGAVWRIQLGPFASKAEASALQQRLQTEAQLQSFIASAQ" regulatory complement(700907..700912) /regulatory_class="ribosome_binding_site" /gene="rlpA" /locus_tag="STM0638" /note="putative RBS for rlpA; RegulonDB:STMS1H000962" gene complement(700911..702037) /gene="mrdB" /locus_tag="STM0639" /db_xref="GeneID:1252159" CDS complement(700911..702023) /gene="mrdB" /locus_tag="STM0639" /note="similar to E. coli rod shape-determining membrane protein; sensitivity to radiation and drugs (AAC73735.1); Blastp hit to AAC73735.1 (370 aa), 98% identity in aa 1 - 370" /codon_start=1 /transl_table=11 /product="rod shape-determining protein RodA" /protein_id="NP_459631.1" /db_xref="GI:16764016" /db_xref="GeneID:1252159" /translation="MTDNPNKKTFWDKIHIDPTMLLILLALLVYSALVIWSASGQDIG MMERKIGQIAMGLVVMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRW LDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTAIALVLIFMPTLLVAAQPDL GTSILVALSGLFVLFLSGLSWRLIGVAIVLIAAFIPILWFFLMHDYQRQRVMMLLDPE TDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVG ILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGV PLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV" gene complement(702026..703945) /gene="mrdA" /locus_tag="STM0640" /db_xref="GeneID:1252160" CDS complement(702026..703927) /gene="mrdA" /locus_tag="STM0640" /note="similar to E. coli cell elongation, e phase; peptidoglycan synthetase; penicillin-binding protein 2 (AAC73736.1); Blastp hit to AAC73736.1 (633 aa), 96% identity in aa 1 - 632" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 2" /protein_id="NP_459632.1" /db_xref="GI:16764017" /db_xref="GeneID:1252160" /translation="MKRQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQI LRFTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTL DALRSVVDLNDDDIAAFKKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG YKRRYYPYGSALTHVIGYVSKINDKDVERLDRENKLANYAATHDIGKLGIERYYEDIL HGQTGYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVIVT DPRTGGVLSLVSMPSYDPNLFVDGISSKDYSGLLNDPNTPLVNRATQGVYPPASTVKP YVAVSALSAGVITRNTSLFDPGWWQLPGSEKRYRDWKKWGHGHLNITKSLEESADTFF YQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIP VGIGQGYWTATPIQMSKALMILINDGVVKVPHLLMSTAENGKQVPWVQPHEPPVGDIH SGYWEIAKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAE RLRDHKLMTAFAPYNNPQVAVAIILENGGAGPAVGTIMRQILDHIMLGDNNTHLPAEN PVVAAAEDQ" regulatory complement(702032..702037) /regulatory_class="ribosome_binding_site" /gene="mrdB" /locus_tag="STM0639" /note="putative RBS for mrdB; RegulonDB:STMS1H000963" regulatory complement(703940..703945) /regulatory_class="ribosome_binding_site" /gene="mrdA" /locus_tag="STM0640" /note="putative RBS for mrdA; RegulonDB:STMS1H000964" gene complement(703958..704438) /gene="ybeA" /locus_tag="STM0641" /db_xref="GeneID:1252161" CDS complement(703958..704425) /gene="ybeA" /locus_tag="STM0641" /note="similar to E. coli orf, hypothetical protein (AAC73737.1); Blastp hit to AAC73737.1 (155 aa), 98% identity in aa 1 - 155" /codon_start=1 /transl_table=11 /product="23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH" /protein_id="NP_459633.1" /db_xref="GI:16764018" /db_xref="GeneID:1252161" /translation="MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRG KNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLANELERWKQDGRDVSLLI GGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE" gene complement(704429..704758) /gene="ybeB" /locus_tag="STM0642" /db_xref="GeneID:1252162" CDS complement(704429..704746) /gene="ybeB" /locus_tag="STM0642" /note="similar to E. coli orf, hypothetical protein (AAC73738.1); Blastp hit to AAC73738.1 (69 aa), 95% identity in aa 1 - 69" /codon_start=1 /transl_table=11 /product="ribosome silencing factor" /protein_id="NP_459634.1" /db_xref="GI:16764019" /db_xref="GeneID:1252162" /translation="MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTS SRHVMSIADHVVQSSRAAGMLPLGVEGENAADWIVVDLGDVIVHVMQEESRRLYELEK LWS" regulatory complement(704433..704438) /regulatory_class="ribosome_binding_site" /gene="ybeB" /locus_tag="STM0642" /note="putative RBS for ybeA; RegulonDB:STMS1H000965" regulatory complement(704753..704758) /regulatory_class="ribosome_binding_site" /gene="ybeB" /locus_tag="STM0642" /note="putative RBS for ybeB; RegulonDB:STMS1H000966" gene complement(705075..705693) /gene="cobC" /locus_tag="STM0643" /db_xref="GeneID:1252163" CDS complement(705075..705683) /gene="cobC" /locus_tag="STM0643" /EC_number="3.1.3.-" /note="alpha-ribazole-5'-phosphate phosphatase" /codon_start=1 /transl_table=11 /product="alpha-ribazole phosphatase" /protein_id="NP_459635.1" /db_xref="GI:16764020" /db_xref="GeneID:1252163" /translation="MRLWLVRHGETEANVAGLYSGHAPTPLTEKGIGQAKTLHTLLRH APFDRVLCSELERARHTARLVLEGRDVPQHILPELNEMYFGDWEMRHHRDLTHEDAES YAAWCTDWQNAVPTNGEGFQAFTRRVERFISRLDAFSDCQNLLIVSHQGVLSLLIARL LTMPAASLWHFRVEQGCWSAIDICEGFATLKVLNSRAVWRPE" regulatory complement(705688..705693) /regulatory_class="ribosome_binding_site" /gene="cobC" /locus_tag="STM0643" /note="putative RBS for cobC; RegulonDB:STMS1H000967" gene 705773..706874 /gene="cobD" /locus_tag="STM0644" /db_xref="GeneID:1252164" regulatory 705773..705778 /regulatory_class="ribosome_binding_site" /gene="cobD" /locus_tag="STM0644" /note="putative RBS for cobD; RegulonDB:STMS1H000968" CDS 705780..706874 /gene="cobD" /locus_tag="STM0644" /note="CobD (gi|1895094)" /codon_start=1 /transl_table=11 /product="threonine-phosphate decarboxylase" /protein_id="NP_459636.1" /db_xref="GI:16764021" /db_xref="GeneID:1252164" /translation="MALFNSAHGGNIREAATVLGISPDQLLDFSANINPLGMPVSVKR ALIDNLDCIERYPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGLKPRRAM IVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTG LLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFY AIPGLRLGYLVNSDDAAMARMRRQQMPWSVNALAALAGEVALQDSAWQQATWHWLREE GARFYQALCQLPLLTVYPGRANYLLLRCEREDIDLQRRLLTQRILIRSCANYPGLDSR YYRVAIRSAAQNERLLAALRNVLTGIAPAD" gene complement(706849..707499) /gene="nadD" /locus_tag="STM0645" /db_xref="GeneID:1252165" CDS complement(706849..707490) /gene="nadD" /locus_tag="STM0645" /EC_number="2.7.7.18" /note="similar to E. coli orf, hypothetical protein (AAC73740.1); Blastp hit to AAC73740.1 (213 aa), 85% identity in aa 1 - 213" /codon_start=1 /transl_table=11 /product="putative nicotinic acid mononucleotide adenylyltransferase" /protein_id="NP_459637.1" /db_xref="GI:16764022" /db_xref="GeneID:1252165" /translation="MKSLQALFGGTFDPVHYGHLKPVETLANLIGLSRVIIMPNNVPP HRPQPEASSAQRKYMLELAIADKPLFTLDERELQRNAPSYTAQTLKAWREEQGPEAPL AFIIGQDSLLNFPTWHDYDTILDNTHLIVCRRPGYPLEMTQAQHQQWLEQHLTHTPDD LHQLPAGKIYLAETPWLNISATLIRERLEKGESCDDLLPENVLNYINQQGLYR" gene complement(707492..708523) /gene="holA" /locus_tag="STM0646" /db_xref="GeneID:1252166" CDS complement(707492..708523) /gene="holA" /locus_tag="STM0646" /EC_number="2.7.7.7" /note="similar to E. coli DNA polymerase III, delta subunit (AAC73741.1); Blastp hit to AAC73741.1 (343 aa), 89% identity in aa 1 - 343" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit delta" /protein_id="NP_459638.1" /db_xref="GI:16764023" /db_xref="GeneID:1252166" /translation="MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAIRLAAAS QGFEEHHAFTLDPSTDWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSE LLHDDLLLIVRGNKLTKAQENAAWYTALADRSVQVSCQTPEQAQLPRWVAARAKAQNL QLDDAANQLLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWV DALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKH RVWQNRRPMIGDALQRLHPAQLRQAVQLLTRTEITLKQDYGQSVWADLEGLSLLLCHK ALADVFIDG" regulatory complement(707494..707499) /regulatory_class="ribosome_binding_site" /gene="nadD" /locus_tag="STM0645" /note="putative RBS for nadD; RegulonDB:STMS1H000969" gene complement(708523..709121) /gene="rlpB" /locus_tag="STM0647" /db_xref="GeneID:1252167" CDS complement(708523..709113) /gene="rlpB" /locus_tag="STM0647" /note="similar to E. coli a minor lipoprotein (AAC73742.1); Blastp hit to AAC73742.1 (193 aa), 79% identity in aa 1 - 193" /codon_start=1 /transl_table=11 /product="LPS assembly lipoprotein LptE" /protein_id="NP_459639.1" /db_xref="GI:16764024" /db_xref="GeneID:1252167" /translation="MRYLVTLLLSLAVLVTAGCGWHLRSTTQVPASMKTMILDSGDPN GPLSRAVRNQLRLNNVNLLDKDTTRKDVPSLRLGTVTILQDTASVFQDGQTAEYQMVM TVNASVLIPGHDIYPISTKVYRSFFDNPQMALAKDNEQAMIVQEMYDKAAEQLIRKLT SVRAADIQATKEEATADNETAAPASTPARVSTTLSN" regulatory complement(709116..709121) /regulatory_class="ribosome_binding_site" /gene="rlpB" /locus_tag="STM0647" /note="putative RBS for rlpB; RegulonDB:STMS1H000970" gene complement(709128..711727) /gene="leuS" /locus_tag="STM0648" /db_xref="GeneID:1252168" CDS complement(709128..711710) /gene="leuS" /locus_tag="STM0648" /EC_number="6.1.1.4" /note="similar to E. coli leucine tRNA synthetase (AAC73743.1); Blastp hit to AAC73743.1 (860 aa), 95% identity in aa 1 - 860" /codon_start=1 /transl_table=11 /product="leucine tRNA synthetase" /protein_id="NP_459640.1" /db_xref="GI:16764025" /db_xref="GeneID:1252168" /translation="MQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYP SGRLHMGHVRNYTIGDVVARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTY DNIAYMKNQLKTLGFGYDWSREIATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCP NDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLRDLDKLDHWPDTVKT MQRNWIGRSEGVEITFDVKGYDNTLTVYTTRPDTFMGATYLAVAAGHPLAQKAAANNA ELAAFIDECRNTKVAEAEMATMEKKGVDTGYKAIHPLTGEEIPVWAANFVLMEYGTGA VMAVPGHDQRDYEFASKYGLTIKPVILAADGSEPDLSEQALTEKGVLFNSGEFDGLAF EAAFNAIADKLAEKGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVLPTPEDQL PVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYARYTCPQY QEGMLDSKAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVTSDEPAKQLLCQ GMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSK NNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFIKRVWKLVYEHTA KGPVAALNVDALSEDQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP QEGEQDRALLQEALQAVVRMLNPFTPHVCFTLWQELGGEGDIDNAPWPVADEQAMVEN TTLVVVQVNGKVRGKITVPVDATEEQVRERAGQEHLVAKYLDGVTVRKVIYVPGKLLN LVVG" regulatory complement(711722..711727) /regulatory_class="ribosome_binding_site" /gene="leuS" /locus_tag="STM0648" /note="putative RBS for leuS; RegulonDB:STMS1H000971" gene 711947..712288 /locus_tag="STM0649" /db_xref="GeneID:1252169" CDS 711947..712288 /locus_tag="STM0649" /note="similar to E. coli altronate hydrolase (AAC76126.1); Blastp hit to AAC76126.1 (495 aa), 38% identity in aa 4 - 82" /codon_start=1 /transl_table=11 /product="putative hydrolase N-terminus" /protein_id="NP_447100.1" /db_xref="GI:1109557593" /db_xref="GeneID:1252169" /translation="MARLLIREDRTKAKELIVKKNAVVIHPQDCVATAITALKAGETA TMFIGEREISVVLHQDVPFGHKFAICDVPFHGEVYKYGESIGRATQEIKSGDYVHVHN VESERGRGDWK" gene 712300..713477 /locus_tag="STM0650" /db_xref="GeneID:1252170" regulatory 712300..712305 /regulatory_class="ribosome_binding_site" /locus_tag="STM0650" /note="putative RBS for STM0650; RegulonDB:STMS1H000972" CDS 712305..713477 /locus_tag="STM0650" /EC_number="4.2.1.7" /EC_number="6.1.1.4" /note="similar to E. coli putative hydrolase (AAC76162.1); Blastp hit to AAC76162.1 (523 aa), 35% identity in aa 167 - 521, 32% identity in aa 119 - 223" /codon_start=1 /transl_table=11 /product="putative hydrolase C-terminus" /protein_id="NP_447101.1" /db_xref="GI:1109557594" /db_xref="GeneID:1252170" /translation="MIMSNETFLGFRRPDGRFGIRNYVLILPTSVCANKVAQDIARQV KGATWVNNDFGCCQVAGDARLTEKTLINVANNPNVGAIVVVGLGCEGAEPLRIAEEIT AFGKPTSCITIQEEGGTLKCQARGISLARDYAQQLSMQKPQQAPVSELLLAMECGGSD TTSGLASNPSCGVASDKLIRCGGSSILSETTEFIGAEHVMAKRAVTPEVGQQLIDLVV GCEARAKALGEDIRGGQPTPGNIKGGLTTIEEKSLGCMHKAGHAPLQGVLEYADSPTH PGLWIMDTPGQDIESISGMVAGGAQIVIFTTGRGTPAGNPIAPVIKITGNKATWEMMQ DNIDIDVSAIMSGEASITQMGEEIYQEILRVANGKTTKSEDLGHNEFSIYKIAPTF" gene 713522..714480 /locus_tag="STM0651" /db_xref="GeneID:1252171" regulatory 713522..713527 /regulatory_class="ribosome_binding_site" /locus_tag="STM0651" /note="putative RBS for STM0651; RegulonDB:STMS1H000973" CDS 713527..714480 /locus_tag="STM0651" /note="similar to E. coli 2-keto-3-deoxy-D-gluconate transport system (AAC76891.1); Blastp hit to AAC76891.1 (330 aa), 38% identity in aa 4 - 315" /codon_start=1 /transl_table=11 /product="2-keto-3-deoxygluconate permease" /protein_id="NP_459643.1" /db_xref="GI:16764028" /db_xref="GeneID:1252171" /translation="MKIKKTLERFPGGMMVVPLIIGALFKTFAPEALEIGGFVTSISH GAMAILGMFLVCMGADIQFKAAPKALKKGAAITFAKFASGVIIGILVGKFCGPDGLLG LSALAIISAMTNSNSGLYAALVGEYGDETDGGAIAVISLNDGPFFTMLALGSAGMVSI PFMNLVAVIIPIIIGMILGNLDEDMRKFLKQGSVVTIPFFAFGLGYGIDFARLITAGS SGILLGLMTVAIGGFFNIFADRLTGGSGVAGAAVSTTSGNAVATPAAIALLDPHFTDL ASTAAAQVAASTIITALCAPFLTVWIKKRYDRKLNPAAAGG" gene 714541..716476 /locus_tag="STM0652" /db_xref="GeneID:1252172" regulatory 714541..714546 /regulatory_class="ribosome_binding_site" /locus_tag="STM0652" /note="putative RBS for STM0652; RegulonDB:STMS1H000974" CDS 714548..716476 /locus_tag="STM0652" /note="similar to E. coli response regulator of ato, ornithine decarboxylase antizyme (sensor ATOS) (AAC75280.1); Blastp hit to AAC75280.1 (461 aa), 37% identity in aa 67 - 453" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="NP_459644.1" /db_xref="GI:16764029" /db_xref="GeneID:1252172" /translation="MNKTKDIAASPLCFVSPYPQLAKAAEALVAQLDYAVTIHQTTLN RILDELPLLESRGHQVLISRGGCAEILKKHSKLPVVEIKMSGYDILDALIPFKGQKGT VGIVGFSSVIKGCARVAEQLNINYKIFTLQGNDKETISCLKRQLASTPLDCIVGDTVC QDYFSPLGSQFRLLDSSPASITEALEEARSLYLAFRSQLLERHHLQLILDQFDKAVIT LDDTGALLHYNKYASQLFKINASGEIYDASFLKQVLHQERHTLREGKTVSAKVVDTPQ GAMVVNLYPVFAARQLSRVVLTMQTVSSLQGAEHHVRRQELSRRGLSARYHFDDLLTE NPEMLRRLAIIKNYAGTDATILINGESGTGKEVLAQSIHNASQRVNGPFVAINCGAMA PQILESELFGYVAGAFTGASPKGKIGLFELAHHGTIFLDEISELDKPLQTRLLRVLQE RQIMRLGSDQMIPVDIRVIAATNQTLTKLIADGTFREDLYYRLNVLKVTTIPLRKRPE DIKAIGLSLLTSFSQHYKRPALTLTPALWQELQRFAWPGNVRQLSNIIERLVLSIDHS PATLDEGRLLLDDLEEGSRREPTTCHDCQMLAGDYKTIRLRILRKLLEAERDNKSLVA KRLNVDRTSLTRWIRESA" gene 716558..717042 /gene="ybeL" /locus_tag="STM0653" /db_xref="GeneID:1252173" regulatory 716558..716563 /regulatory_class="ribosome_binding_site" /gene="ybeL" /locus_tag="STM0653" /note="putative RBS for ybeL; RegulonDB:STMS1H000975" CDS 716569..717042 /gene="ybeL" /locus_tag="STM0653" /note="similar to E. coli putative alpha helical protein (AAC73744.1); Blastp hit to AAC73744.1 (160 aa), 91% identity in aa 1 - 160" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459645.1" /db_xref="GI:16764030" /db_xref="GeneID:1252173" /translation="MNKVAQYYRELVASLSERLRNGERDIDALVEQARQRVMQTGELT RTEVDELTRAVRRDLEEFAMSYEESQDDSVFLRVIKESLWQELADITDKTQLEWREVF QDLNHHGVYHSGEVVGLGNLVCEKCHYHLAVYTPDVLPLCPKCGHDQFQRRPFEP" gene complement(717081..718096) /gene="ybeQ" /locus_tag="STM0654" /db_xref="GeneID:1252174" CDS complement(717081..718076) /gene="ybeQ" /locus_tag="STM0654" /note="similar to E. coli orf, hypothetical protein (AAC73745.1); Blastp hit to AAC73745.1 (327 aa), 36% identity in aa 6 - 307" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459646.1" /db_xref="GI:16764031" /db_xref="GeneID:1252174" /translation="MNHSITSHPCDNVSLAQLTELAQSGNSEAQYILGRLYNDERIDG SEEDKLSFYWLQQAAEQGHCEAQYWLGLRYKDTPTDMKDNTLALFWSEKAAQQGHRHA FNTLGWVQEGETGMAPDYAQAVAWYRKGAEQSHNLAQYNLGRMYHSGTGVEQNDTQAL YWFKQAALQGHCASQERLAYMYGNGKGCRKNLSLAALWYKKSALQESSYSQYQMGYCY YIGKGIKQDYQQAIYWFRKAADQGDDDAYNSIGWMYKCGHGVEQNYSLALEWFHKSAE CNNSSGWYNLGCMYRDGHGTAQDLQQALYWFKKAQPTGKWNVDEEIRKLEAQLHA" regulatory complement(718091..718096) /regulatory_class="ribosome_binding_site" /gene="ybeQ" /locus_tag="STM0654" /note="putative RBS for ybeQ; RegulonDB:STMS1H000976" gene 718188..718908 /gene="ybeR" /locus_tag="STM0655" /db_xref="GeneID:1252175" regulatory 718188..718193 /regulatory_class="ribosome_binding_site" /gene="ybeR" /locus_tag="STM0655" /note="putative RBS for ybeR; RegulonDB:STMS1H000977" CDS 718201..718908 /gene="ybeR" /locus_tag="STM0655" /note="similar to E. coli orf, hypothetical protein (AAC73746.1); Blastp hit to AAC73746.1 (235 aa), 62% identity in aa 1 - 235" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459647.1" /db_xref="GI:16764032" /db_xref="GeneID:1252175" /translation="MDKESQYLLFALSSPMEVLNEDCLPSHSSPKMYLGVKRFDLESS WGIENRDELLQTISRRTDDGHATQLEWLYRRWFRYAPQEWQEYTDALDEGDRIYARFV ADTAVCCGEGGIRSWDYVRMGFLCRMGVLNEWLTEEESLWLQSRIQLRALSYYSGWLP YFSAYYTGRLYWQLRNGDNLPLLRETFARKEFDDAGRRMMNKLIAGKDSFYATLPWRY LPHYPECPDTLQEVSDL" gene 718897..720338 /gene="ybeS" /locus_tag="STM0656" /db_xref="GeneID:1252176" regulatory 718897..718902 /regulatory_class="ribosome_binding_site" /gene="ybeR" /locus_tag="STM0655" /note="putative RBS for ybeS; RegulonDB:STMS1H000978" CDS 718905..720338 /gene="ybeS" /locus_tag="STM0656" /note="similar to E. coli putative enzyme of polynucleotide modification (AAC73747.1); Blastp hit to AAC73747.1 (475 aa), 45% identity in aa 1 - 474" /codon_start=1 /transl_table=11 /product="molecular chaperone DnaJ" /protein_id="NP_459648.1" /db_xref="GI:16764033" /db_xref="GeneID:1252176" /translation="MKTCWQVLGIEATTDTDAIRQAYLALLPSFHPETDPQGFKQLRE AYENALQGTTSPAITVVDEDPDTPWVNYLREIFGDLLADGERRFQPQAWQEFIQQINK LSISQVEKSRWWLCAIAMKTFPISYSCLKLLSDRLAWEQGSDNRDVDAEEVEDLLFEI RRGDLFDYSLLLHLPVAVQNQTIAFYDALDNTFFEHPLYFAQLMAQHGPWIIPDNLRF QRRLLRWFSTLHWGIAELLPVALAWQEAEPDNATPGYYYLAQRVFCGEGDSLLPELYA QWWAHPSTQLDDLLLRWCRQHRPDFFPLLVMAVEGREQVDINAEQLLYIPGSSARSCL LWAEALHSGALSPLSESFIARRLNYGAPAVSEAHSQHPYWLLYQVADSLACAEEPSAA LLQSLVTKLDAPDICPLEALVIRGLLGRAAAVATPCEAVVADEEPVTTVTSPSTEESG GGFGLWQVIKIILFIGVVGHVLRQFMH" gene 720336..721045 /gene="ybeU" /locus_tag="STM0657" /db_xref="GeneID:1252177" regulatory 720336..720341 /regulatory_class="ribosome_binding_site" /gene="ybeU" /locus_tag="STM0657" /note="putative RBS for ybeU; RegulonDB:STMS1H000979" CDS 720350..721045 /gene="ybeU" /locus_tag="STM0657" /note="similar to E. coli putative tRNA ligase (AAC73749.1); Blastp hit to AAC73749.1 (235 aa), 61% identity in aa 1 - 235" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459649.1" /db_xref="GI:16764034" /db_xref="GeneID:1252177" /translation="MDKEEQYLLFALSTPMEVLYIGNEPSHTSPAMYTGIPAVDLSDS WGIDNREDLIQTIYRMTDDGHAADLAPFYIRWFTLSPRQWREFTAQFGEQGQIYARFV AETALCCGRGGIKAWDYVRMGFLCRMGVLNQWLTEEESLWLQSRIYARAYYFYDGWTQ YFAAYSLGRLYWQAKGDTIQAYFAHLKYDASGARMFNELASTTESYYAQLPWRPLNEQ PTCPETLKGVSDL" gene 721026..722514 /gene="ybeV" /locus_tag="STM0658" /db_xref="GeneID:1252178" regulatory 721026..721031 /regulatory_class="ribosome_binding_site" /gene="ybeU" /locus_tag="STM0657" /note="putative RBS for ybeV; RegulonDB:STMS1H000980" CDS 721042..722514 /gene="ybeV" /locus_tag="STM0658" /note="similar to E. coli orf, hypothetical protein (AAC73750.1); Blastp hit to AAC73750.1 (483 aa), 58% identity in aa 1 - 434" /codon_start=1 /transl_table=11 /product="molecular chaperone DnaJ" /protein_id="NP_459650.1" /db_xref="GI:16764035" /db_xref="GeneID:1252178" /translation="MNICWEILGIEPTTDLECIRQAYLALLPSFHPESDPQGFKRLRQ AYEEAQHWAASPAEDAKMEEVGDEHEILVAFRELLASERDRFQPSAWQKFIQQLNQCS MDEIDKLRWQLCDIAMKTETISLSCLALLAQRLNWQPQEAEDDADGEELEAFLETVKR GDAFDLLSLAKLPLVVQDQTDAYFFKLEHIWRFYPEHFADALQVQGAWIIPDDKQLHR KLLHWFSAEQWGMAELVDIARRWQAAEPDNEDAHYYLCKQRLLCGEGESLLADLCDFW QRYPSTQADDLLLGWCRQHRPDFFPLAVMAVEARCMADAEYVPGESARTRLLWADILH SGRLSPLGRSFVDSLFYKRKAMAWANSRLSTQGEPETPLLDLYRTAEQVVLEAFPKEK PFFRLLIRLEEGQSCPLEALITQALSSKIAMKPGDIRDKKELAEELRLAAEKEETKLS SEAKTEAPRQAESGGVMKIMKIVGLIALIVCALNRFFHFF" gene complement(722536..724215) /gene="hscC" /locus_tag="STM0659" /db_xref="GeneID:1252179" CDS complement(722536..724215) /gene="hscC" /locus_tag="STM0659" /note="similar to E. coli putative dnaK protein (AAC73751.1); Blastp hit to AAC73751.1 (556 aa), 83% identity in aa 1 - 556" /codon_start=1 /transl_table=11 /product="molecular chaperone HscC" /protein_id="NP_459651.1" /db_xref="GI:16764036" /db_xref="GeneID:1252179" /translation="MDNATLAIGIDLGTTNSLIAVWQDGAAQLIPNKFGEYLTPSIIS MDENKQILVGKPAAARKTSHPDKTAALFKRAMGSNTHWHLGEESFNAPELSSLVLRSL KEDAEDYLQQPIKDVVISVPAYFSDEQRKHTRLAAELAGLNAVRLINEPTAAAMAYGL HTQQNSRSLVFDLGGGTFDVTVLEYATPIIEVHASAGDNYLGGEDFTHLLLDEVLKRW NLDKSALTDSDLAALYACVEAAKCASSSPLRMSWLYQESVLESTFYDDELEALWLPLL NRLRTPIEQALRDSRLKPEQIDSLVLVGGASQMPLVQRIAVRLFGKLPYQSYDPSTIV ALGAATQAACRLRHEDVEEVILTDICPYSLGVEVNRQGVPGIFSPIIERNTTVPVSKV ETYSTMHPEQDSICVRVYQGESHKVKNNILIDSFDVMLKPNGHIQAIDIRFSYDINGL LEVDVLLEDGKSESRIISHNATSLTTQQIDASRERLLALKIYPRDMLINRTFKAQLEE QWSRALGDEREMLGEIITDFDAALLSNDMQRVDDVRRRACEYLGIDEPKAP" gene complement(724291..725535) /locus_tag="STM0660" /db_xref="GeneID:1252180" CDS complement(724291..725529) /locus_tag="STM0660" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459652.1" /db_xref="GI:16764037" /db_xref="GeneID:1252180" /translation="MFWRNNRPEISLLQHDVAHITFSVRNGKALLRPSVIHDPDSDAG IHTLSWHGSPLIRFYTEAWCPTCAEFVYAGFSNDDEGAAEFLSSLAEWNQPGVGLNEA FTALTPLFSLFADGYYRLEERELYPTDGNGHFFWAVGNEKQPNPATTGQWIADVDYHY QSGEPCFLLPGQPPSRFNPQRAGYYRDKPESHALAWYMNDSWLCVLLDGHHKATAAAL EGRPVKTWVISQPVAMTCYETRQQCLRFYDGERLEEAQFQRRIPLKIQYEKLPPSLWE DYFTRHDERYTRVNWPNALANCATHYPDLAACADIIAAGDLSEAGLNKIMAQGITEEG FPAVLLRALFYTHSPLLIDFVRFLTRAPGYACHYPLAFRLLAQKRTPQADAFFLDFAI NDDGERPELTNIMDEYFRQA" regulatory complement(725530..725535) /regulatory_class="ribosome_binding_site" /locus_tag="STM0660" /note="putative RBS for STM0660; RegulonDB:STMS1H000981" gene complement(725561..726507) /gene="ybeK" /locus_tag="STM0661" /db_xref="GeneID:1252181" CDS complement(725561..726496) /gene="ybeK" /locus_tag="STM0661" /note="similar to E. coli putative tRNA synthetase (AAC73752.1); Blastp hit to AAC73752.1 (311 aa), 92% identity in aa 1 - 311" /codon_start=1 /transl_table=11 /product="pyrimidine-specific ribonucleoside hydrolase RihA" /protein_id="NP_459653.1" /db_xref="GI:16764038" /db_xref="GeneID:1252181" /translation="MALPIIIDCDPGHDDAIALVLALASPELEVKAITSSAGNQTPEK TLRNVLRMLTLLKRLDIPVAGGAVKPLMRELIIADNVHGESGLDGPALPEPSFAPQSG TAVELMAKTLRESAQPVTIVSTGPQTNVALLLNSHPELHTKIARIVIMGGAMALGNWT PAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVTHKAQIHAADIERFRAIGNPISTIVAE LLDFFMEYHKDEKWGFVGAPLHDPCTIAWLLKPEIFTTVERWVGVETQGKYTQGMTVV DYYFLTGNKPNATVMVDVDRQGFVDLLAERLQYYA" regulatory complement(726502..726507) /regulatory_class="ribosome_binding_site" /gene="ybeK" /locus_tag="STM0661" /note="putative RBS for ybeK; RegulonDB:STMS1H000982" gene complement(726613..727350) /gene="gltL" /locus_tag="STM0662" /db_xref="GeneID:1252182" CDS complement(726613..727338) /gene="gltL" /locus_tag="STM0662" /note="ABC superfamily (atp_bind); similar to E. coli ATP-binding protein of glutamate/aspartate transport system (AAC73753.1); Blastp hit to AAC73753.1 (241 aa), 95% identity in aa 1 - 241" /codon_start=1 /transl_table=11 /product="arginine transporter ATP-binding subunit" /protein_id="NP_459654.1" /db_xref="GI:16764039" /db_xref="GeneID:1252182" /translation="MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLI KTVNGLEPVQKGEITVNGIIVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQ VKVLKRDKAAARDKGLKLLERVGLSAHANKFPAQLSGGQQQRVAIARALCMDPIAMLF DEPTSALDPEMINEVLDVMVELANEGMTMMVVTHEMGFARKVANRVIFMDEGKIVEDS PKEEFFANPSSDRAKDFLAKILH" gene complement(727338..728026) /gene="gltK" /locus_tag="STM0663" /db_xref="GeneID:1252183" CDS complement(727338..728012) /gene="gltK" /locus_tag="STM0663" /note="ABC superfamily (membrane); similar to E. coli glutamate/aspartate transport system permease (AAC73754.1); Blastp hit to AAC73754.1 (224 aa), 95% identity in aa 1 - 223" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter permease" /protein_id="NP_459655.1" /db_xref="GI:16764040" /db_xref="GeneID:1252183" /translation="MYEFDWSSIIPSLPYLLAGLVITLKITVTAVIVGIVWGTILAVM RLSSFAPIAWFAKAYVNVFRSIPLVMVLLWFYLIVPGFLQNVLGLSPKTDIRLISAMV AFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLT QGIVLFQDTSLVYVLSLADFFRTASTIGERDGTQVEMILFAGAVYFVISLSASLLVSY LKKRTV" regulatory complement(727345..727350) /regulatory_class="ribosome_binding_site" /gene="gltK" /locus_tag="STM0663" /note="putative RBS for gltL; RegulonDB:STMS1H000983" gene complement(728012..728765) /gene="gltJ" /locus_tag="STM0664" /db_xref="GeneID:1252184" CDS complement(728012..728752) /gene="gltJ" /locus_tag="STM0664" /note="ABC superfamily (membrane); similar to E. coli glutamate/aspartate transport system permease (AAC73755.1); Blastp hit to AAC73755.1 (246 aa), 94% identity in aa 1 - 246" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter permease" /protein_id="NP_459656.1" /db_xref="GI:16764041" /db_xref="GeneID:1252184" /translation="MSIDWNWGIFLQEAPFGNTTYLGWLWSGFQVTVALSITAWIIAF LVGSIFGILRTVPNRFLSGLGTLYVELFRNVPLIVQFFTWYLVVPELLPEDLGMWFKA ELDPNIQFFLSSMICLGLFTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVL LPNAYRVIVPPMTSEMMNLVKNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLA YVLINAVIMLVMSLVERKVRLPGNVGSK" regulatory complement(728021..728026) /regulatory_class="ribosome_binding_site" /gene="gltK" /locus_tag="STM0663" /note="putative RBS for gltK; RegulonDB:STMS1H000984" regulatory complement(728760..728765) /regulatory_class="ribosome_binding_site" /gene="gltJ" /locus_tag="STM0664" /note="putative RBS for gltJ; RegulonDB:STMS1H000985" gene complement(728912..729847) /gene="gltI" /locus_tag="STM0665" /db_xref="GeneID:1252185" CDS complement(728912..729838) /gene="gltI" /locus_tag="STM0665" /note="ABC superfamily (bind_prot); similar to E. coli putative periplasmic binding transport protein (AAC73756.1); Blastp hit to AAC73756.1 (302 aa), 93% identity in aa 1 - 302" /codon_start=1 /transl_table=11 /product="glutamate/aspartate transporter" /protein_id="NP_459657.1" /db_xref="GI:16764042" /db_xref="GeneID:1252185" /translation="MIKELDMQLRKLTTAMLVMGLSAGLAHAEDGAPAAGSTLDKIAK NGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQ NRIPLLQNGTFDFECGSTTNNLERQKQAAFSDTIFVVGTRLLTKKGGDIKDFPDLKGK AVVVTSGTTSEILLHKLNEEQKMGMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGE RAKAKKPDNWEIVGKPQSQEAYGCMLRKNDPEFKKLMDDTIAQAQTSGEAEKWFDKWF KNPIPPKNLNMNFELSDEMKALFKAPNDKALN" regulatory complement(729842..729847) /regulatory_class="ribosome_binding_site" /gene="gltI" /locus_tag="STM0665" /note="putative RBS for gltI; RegulonDB:STMS1H000986" gene complement(730175..731724) /gene="lnt" /locus_tag="STM0666" /db_xref="GeneID:1252186" CDS complement(730175..731713) /gene="lnt" /locus_tag="STM0666" /EC_number="2.3.1.-" /note="copper homeostasis protein; inner membrane; similar to E. coli apolipoprotein N-acyltransferase, copper homeostasis protein, inner membrane (AAC73758.1); Blastp hit to AAC73758.1 (512 aa), 89% identity in aa 1 - 512" /codon_start=1 /transl_table=11 /product="apolipoprotein N-acyltransferase" /protein_id="NP_459658.1" /db_xref="GI:16764043" /db_xref="GeneID:1252186" /translation="MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIVSLIGL QALTFNRRPLQSAAIGYCWGLGLFGSGINWVYVSIAQFGGMPGPVNVFLVVLLAAYLS LYTGLFAGILSRLWPKTNWLRVAIAAPAIWQITEFLRGWVLTGFPWLQFGYSQVDGPL KGLAPVMGVEAINFLLMMVSGLLALALATRNWRPLAVAVILFALPFPLRYIQWFTLEP AKATQVSLVQGDIPQSLKWDENQLLNTLKIYLNETRPELGKSQIIIWPESAIPDLEIN QQPFLRSLDEMLREKNSTLITGIVDARLNKQNRYDTYNTIITLGKDNPYSYDSPNRYN KNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPQLHAHDYKLTAAICYEIIL GEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRSLELARPLLRSTNNGITA VIGPQGEIQAMIPQFTRQVLTTNVTPTTGLTPYARTGNWPLWVLTALFAFGAVVMSLR QRRK" regulatory complement(731719..731724) /regulatory_class="ribosome_binding_site" /gene="lnt" /locus_tag="STM0666" /note="putative RBS for lnt; RegulonDB:STMS1H000987" gene complement(731733..732629) /gene="ybeX" /locus_tag="STM0667" /db_xref="GeneID:1252187" CDS complement(731733..732611) /gene="ybeX" /locus_tag="STM0667" /note="similar to E. coli putative transport protein (AAC73759.1); Blastp hit to AAC73759.1 (292 aa), 97% identity in aa 1 - 292" /codon_start=1 /transl_table=11 /product="magnesium/cobalt efflux protein" /protein_id="NP_459659.1" /db_xref="GI:16764044" /db_xref="GeneID:1252187" /translation="MSDDNSHSSDTVNSKKGFFSLLLSQLFHGEPKNRDELLALIRDS GQNELIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSR FPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRTAVVVPESKRVDRMLKEFRS QRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTIRALA SIEDFNDAFGTHFSDEEVDTIGGLVMQAFGHLPARGETIDIDGYQFKVAMADSRRIIQ VHVRIPDDSPQPKLDE" regulatory complement(732624..732629) /regulatory_class="ribosome_binding_site" /gene="ybeX" /locus_tag="STM0667" /note="putative RBS for ybeX; RegulonDB:STMS1H000988" gene complement(732769..733259) /gene="ybeY" /locus_tag="STM0668" /db_xref="GeneID:1252188" CDS complement(732769..733242) /gene="ybeY" /locus_tag="STM0668" /note="hypothetical protein in cutE-corC intergenic region. (SW:YBEY_SALTY)" /codon_start=1 /transl_table=11 /product="rRNA maturation RNase YbeY" /protein_id="NP_459660.1" /db_xref="GI:16764045" /db_xref="GeneID:1252188" /translation="MSQVILDLQLACENHAGLPDEAQFQRWLDGVIPQFQEEAEVTIR LVDEAESHDLNLTYRGKDKPTNVLSFPFEAPAGIEMPLLGDLIICRQVVEQEAQEQSK PLEAHWAHMVVHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPYIAEKIAE" gene complement(733239..734331) /gene="phoL" /locus_tag="STM0669" /db_xref="GeneID:1252189" CDS complement(733239..734324) /gene="phoL" /locus_tag="STM0669" /note="similar to E. coli putative ATP-binding protein in pho regulon (AAC73761.1); Blastp hit to AAC73761.1 (359 aa), 96% identity in aa 1 - 359" /codon_start=1 /transl_table=11 /product="putative phosphate starvation-inducible protein, ATP-binding" /protein_id="NP_459661.3" /db_xref="GI:1109557595" /db_xref="GeneID:1252189" /translation="MFSVRRYRHKRNSLNIDTREITLEPADNARLLSLCGPFDDNIKQ LERRLGIEINRRDNHFKLTGRPICVTAATDILRSLYVDTAPMRGQTQDIEPEQIHLAI KEARVLEQSAESVPDYGKAINIKTKRGVIKPRTPNQAQYIANILDHDITFGVGPAGTG KTYLAVAAAVDALERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFE MLGFEKVEKLIERNVIEVAPLAYMRGRTLNDAFIILDESQNTTIEQMKMFLTRIGFNS KAVITGDVTQIDLPRNTKSGLRHAIEVLAEVDEISFNFFHSEDVVRHPVVARIVNAYE AWEEAEQKRKAALAAERKREAQEQEQK" regulatory complement(733254..733259) /regulatory_class="ribosome_binding_site" /gene="ybeY" /locus_tag="STM0668" /note="putative RBS for ybeY; RegulonDB:STMS1H000989" regulatory complement(734326..734331) /regulatory_class="ribosome_binding_site" /gene="phoL" /locus_tag="STM0669" /note="putative RBS for phoL; RegulonDB:STMS1H000990" gene complement(734490..735914) /gene="miaB" /locus_tag="STM0670" /db_xref="GeneID:1252190" CDS complement(734490..735914) /gene="miaB" /locus_tag="STM0670" /note="similar to E. coli orf, hypothetical protein (AAC73762.1); Blastp hit to AAC73762.1 (474 aa), 98% identity in aa 1 - 474" /codon_start=1 /transl_table=11 /product="tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB" /protein_id="NP_459662.1" /db_xref="GI:16764047" /db_xref="GeneID:1252190" /translation="MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVL LLNTCSIREKAQEKVFHQLGRWRLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDII FGPQTLHRLPEMINSVRGDRSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKY CTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTF ADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNL MGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSY SFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGT SRKNIMELSGRTENNRVVNFEGTPEMIGKFVDVEITDVYPNSLRGKVVRTEDEMGLRV AETPESVIARTRKENELGVGFYQP" gene 736044..737233 /gene="ubiF" /locus_tag="STM0671" /db_xref="GeneID:1252191" regulatory 736044..736049 /regulatory_class="ribosome_binding_site" /gene="ubiF" /locus_tag="STM0671" /note="putative RBS for ubiF; RegulonDB:STMS1H000991" CDS 736058..737233 /gene="ubiF" /locus_tag="STM0671" /EC_number="1.14.13.-" /note="similar to E. coli orf, hypothetical protein (AAC73763.1); Blastp hit to AAC73763.1 (391 aa), 85% identity in aa 1 - 391" /codon_start=1 /transl_table=11 /product="2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase" /protein_id="NP_459663.1" /db_xref="GI:16764048" /db_xref="GeneID:1252191" /translation="MTNQPTEIAIVGGGMVGGALALGLAQQGFTVMVIEHAAPAPFVA DSQPDVRISAISAASVALLKGLGVWEAVQGMRSHPYRRLETWEWENAHVVFDAAELKL PLLGYMVENNVLQQALWQALEAHPGVTLRVPASLAALQRRHDGYALELADGECITPKL VIGADGANSQVRQMAGIGIHAWQYAQSCMLITVKCENAPGDSTWQQFTPTGPRAFLPL FDDWASLVWYDAPARIRQLQGLSMTQLQVEINQHFPARLGAVMPVAAGAFPLTRRHAL QYAQPGLALVGDAAHTIHPLAGQGVNLGYRDVDALIDVLASARSYGESWASHSVLKRY QTRRMADNFMMQSGMDLFYAGFSNELPPLRILRNMGLMAAQRAGVLKRQALKYALGL" gene complement(737300..737878) /locus_tag="STM0672" /db_xref="GeneID:1252192" CDS complement(737300..737875) /locus_tag="STM0672" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459664.1" /db_xref="GI:16764049" /db_xref="GeneID:1252192" /translation="MNYQFCWYLFLRPLTFFMVVLLCAFTFIDITASAAWLIILGLVY PVAVSMRLHILHQKKAVMLRQNSAEWIVYLPGIPVQEKQSALINVAFSSKTALRGFYI RALSSKVILHIITFYILWFDVQHATLTWYRIIAALITLAILVKSMSSTLLMLHKVVRC QYNVCTIEMASPWYEIDFKGKLGLCALFAVK" regulatory complement(737873..737878) /regulatory_class="ribosome_binding_site" /locus_tag="STM0672" /note="putative RBS for STM0672; RegulonDB:STMS1H000992" gene complement(738014..738085) /gene="glnX" /locus_tag="STM0673" /db_xref="GeneID:1252193" tRNA complement(738014..738085) /gene="glnX" /locus_tag="STM0673" /product="tRNA-Gln" /db_xref="GeneID:1252193" gene complement(738132..738203) /gene="glnV" /locus_tag="STM0674" /db_xref="GeneID:1252194" tRNA complement(738132..738203) /gene="glnV" /locus_tag="STM0674" /product="tRNA-Gln" /db_xref="GeneID:1252194" gene complement(738253..738326) /gene="metU" /locus_tag="STM0675" /db_xref="GeneID:1252195" tRNA complement(738253..738326) /gene="metU" /locus_tag="STM0675" /product="tRNA-OTHER" /db_xref="GeneID:1252195" gene complement(738345..738416) /gene="glnW" /locus_tag="STM0676" /db_xref="GeneID:1252196" tRNA complement(738345..738416) /gene="glnW" /locus_tag="STM0676" /product="tRNA-Gln" /db_xref="GeneID:1252196" gene complement(738455..738526) /gene="glnU" /locus_tag="STM0677" /db_xref="GeneID:1252197" tRNA complement(738455..738526) /gene="glnU" /locus_tag="STM0677" /product="tRNA-Gln" /db_xref="GeneID:1252197" gene complement(738553..738634) /gene="leuW" /locus_tag="STM0678" /db_xref="GeneID:1252198" tRNA complement(738553..738634) /gene="leuW" /locus_tag="STM0678" /product="tRNA-Leu" /db_xref="GeneID:1252198" gene complement(738646..738719) /gene="metT" /locus_tag="STM0679" /db_xref="GeneID:1252199" tRNA complement(738646..738719) /gene="metT" /locus_tag="STM0679" /product="tRNA-Met" /db_xref="GeneID:1252199" gene complement(738942..740618) /gene="asnB" /locus_tag="STM0680" /db_xref="GeneID:1252200" CDS complement(738942..740606) /gene="asnB" /locus_tag="STM0680" /EC_number="6.3.5.4" /note="similar to E. coli asparagine synthetase B (AAC73768.1); Blastp hit to AAC73768.1 (554 aa), 94% identity in aa 1 - 554" /codon_start=1 /transl_table=11 /product="asparagine synthetase B" /protein_id="NP_459665.1" /db_xref="GI:16764050" /db_xref="GeneID:1252200" /translation="MCSIFGVFDIKTDAAELRKKALELSRLMRHRGPDWSGIYACDNA ILAHERLSIVDVNAGAQPLYNARKTHVLAVNGEIYNHQTLRAEYGDRYAFQTGSDCEV ILALYQEKGPDFLDDLQGMFAFALYDSEKDAYLIGRDHIGIIPLYMGYDEFGNFYVAS EMKALTPVCRTIKEFPAGSYLWSKDGEIRQYYQRDWFEFDAVKDNVTDKNALRQALEE SVKSHLMSDVPYGVLLSGGLDSSVISAITKKFAARRVEDQERSEAWWPQLHSFAVGLE GSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMS RKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLQALHMYDCARANKA MSAWGVEARVPFLDKKFLDVAMRINPQDKMCGNGKMEKHVLRECFESYLPASVAWRQK EQFSDGVGYSWIDTLKEVAAKQISDQQLETARFRFPYNTPSSKEAYLYREIFEELFPV PSAAECVPGGPSVACSSAKAIEWDEAFKTMDDPSGRAVGVHQSAYQ" regulatory complement(740613..740618) /regulatory_class="ribosome_binding_site" /gene="asnB" /locus_tag="STM0680" /note="putative RBS for asnB; RegulonDB:STMS1H000997" gene complement(740896..741659) /gene="nagD" /locus_tag="STM0681" /db_xref="GeneID:1252201" CDS complement(740896..741648) /gene="nagD" /locus_tag="STM0681" /note="similar to E. coli N-acetylglucosamine metabolism (AAC73769.1); Blastp hit to AAC73769.1 (250 aa), 96% identity in aa 1 - 250" /codon_start=1 /transl_table=11 /product="UMP phosphatase" /protein_id="NP_459666.1" /db_xref="GI:16764051" /db_xref="GeneID:1252201" /translation="MTIKNVICDIDGVLMHDNVAVPGAAEFLTGILEKGLPLVLLTNY PSQTGQDLANRFATAGVNVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKA GFTITDVNPDFVIVGETRSYNWDMMHKAAFFVANGARFIATNPDTHGRGFYPACGALC AGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETI LVLSGVSTINDIDSMPFRPSWIYPSVAEIDVI" regulatory complement(741654..741659) /regulatory_class="ribosome_binding_site" /gene="nagD" /locus_tag="STM0681" /note="putative RBS for nagD; RegulonDB:STMS1H000998" gene complement(741695..742921) /gene="nagC" /locus_tag="STM0682" /db_xref="GeneID:1252202" CDS complement(741695..742915) /gene="nagC" /locus_tag="STM0682" /note="similar to E. coli transcriptional repressor of nag (N-acetylglucosamine) operon (AAC73770.1); Blastp hit to AAC73770.1 (406 aa), 94% identity in aa 1 - 406" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_459667.1" /db_xref="GI:16764052" /db_xref="GeneID:1252202" /translation="MTPGGQAQIGNVDLVKQLNSAAVYRLIDQHGPISRIQIAEQSQL APASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDTTLTL YDLSSKVVAEEHYPLPERTQETLEHALLNTIAVFIDSCQRKIRELIAISVILPGLVDP ESGVIRYMPHIQVENWGLVEALEKRFHVTCFVGHDIRSLALAEHYFGASQDCEDSILV RVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQ RVLNLLKQGYQSRVPLDDCTIKTICKAANRGDSLASEVIEHVGRHLGKTIAIAINLFN PQKIVIAGEIIEADKVLLPAIESCINTQALKAFRKNLPVVRSTLDHRSAIGAFALVKR AMLNGTLLQCLLES" regulatory complement(742916..742921) /regulatory_class="ribosome_binding_site" /gene="nagC" /locus_tag="STM0682" /note="putative RBS for nagC; RegulonDB:STMS1H000999" gene complement(742920..744086) /gene="nagA" /locus_tag="STM0683" /db_xref="GeneID:1252203" CDS complement(742920..744074) /gene="nagA" /locus_tag="STM0683" /EC_number="3.5.1.25" /note="similar to E. coli N-acetylglucosamine-6-phosphate deacetylase (AAC73771.1); Blastp hit to AAC73771.1 (382 aa), 92% identity in aa 1 - 380" /codon_start=1 /transl_table=11 /product="N-acetylglucosamine-6-phosphate deacetylase" /protein_id="NP_459668.1" /db_xref="GI:16764053" /db_xref="GeneID:1252203" /translation="MYALTQGRIFTGHEILDDHALVVANGLIDRVCPMAELPPGIEQR SLNGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNFLPTLITT SDELMKQGIRVMREYLEKHPHQALGLHLEGPWLNLVKKGTHNPDFVRKPDAALVDFLC DNADVITKVTLAPEMVPADVIAKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLF NAMPYITGREPGLAGAVLDEADIYCGVIADGLHVDYANIRNAKRLKGDKLCLVTDATA PAGANIEQFIFAGKTIYYRNGLCVDENGTLSGSSLTMIEGVRNLVAHCGIALDEVLRM ATLYPARAIGVDKHLGSIAPGKVANLTAFTHDFKIIKTIVNGDEVVDLSK" regulatory complement(744081..744086) /regulatory_class="ribosome_binding_site" /gene="nagA" /locus_tag="STM0683" /note="putative RBS for nagA; RegulonDB:STMS1H001000" gene complement(744134..745013) /gene="nagB" /locus_tag="STM0684" /db_xref="GeneID:1252204" CDS complement(744134..744934) /gene="nagB" /locus_tag="STM0684" /EC_number="3.5.99.6" /note="similar to E. coli glucosamine-6-phosphate deaminase (AAC73772.1); Blastp hit to AAC73772.1 (266 aa), 95% identity in aa 1 - 266" /codon_start=1 /transl_table=11 /product="glucosamine-6-phosphate deaminase" /protein_id="NP_459669.1" /db_xref="GI:16764054" /db_xref="GeneID:1252204" /translation="MRLIPLSTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGT PLTAYKALVEMHKAGEVSFKHVVTFNMDEYVGLPKEHPESYHSFMHRNFFDHVDIPAE NINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIK TLTHDTRVANSRFFDGDVNQVPKYALTVGVGTLLDAEEVMILVLGHQKAQALQAAVEG NVNHMWTISCLQLHPKAVVVCDEPSTMELKVKTLKYFNELEAENIKGL" protein_bind complement(744939..744951) /gene="nagB" /locus_tag="STM0684" /note="putative binding site for NagC, RegulonDB: STMS1H000301" /bound_moiety="NagC" regulatory complement(744939..744944) /regulatory_class="ribosome_binding_site" /gene="nagB" /locus_tag="STM0684" /note="putative RBS for nagB; RegulonDB:STMS1H001001" protein_bind complement(744977..744997) /gene="nagB" /locus_tag="STM0684" /note="putative binding site for CRP, RegulonDB: STMS1H000075" /bound_moiety="CRP" regulatory complement(744986..744994) /regulatory_class="minus_10_signal" /gene="nagB" /locus_tag="STM0684" /note="putative -10_signal for nagB; RegulonDB:STMLTH004692" regulatory complement(745005..745013) /regulatory_class="minus_35_signal" /gene="nagB" /locus_tag="STM0684" /note="putative -35_signal for nagB; RegulonDB:STMLTH004692" protein_bind complement(745021..745041) /note="putative binding site for CRP, RegulonDB: STMS1H000049" /bound_moiety="CRP" protein_bind 745087..745107 /note="putative binding site for CRP, RegulonDB: STMS1H000112" /bound_moiety="CRP" protein_bind 745119..745147 /note="putative binding site for NagC, RegulonDB: STMS1H000304" /bound_moiety="NagC" protein_bind 745121..745141 /note="putative binding site for CRP, RegulonDB: STMS1H000101" /bound_moiety="CRP" protein_bind 745131..745151 /note="putative binding site for CRP, RegulonDB: STMS1H000059" /bound_moiety="CRP" gene 745168..747213 /gene="nagE" /locus_tag="STM0685" /db_xref="GeneID:1252205" regulatory 745168..745176 /regulatory_class="minus_35_signal" /gene="nagE" /locus_tag="STM0685" /note="putative -35_signal for nagE; RegulonDB:STMLTH004693" regulatory 745192..745200 /regulatory_class="minus_10_signal" /gene="nagE" /locus_tag="STM0685" /note="putative -10_signal for nagE; RegulonDB:STMLTH004693" regulatory 745248..745253 /regulatory_class="ribosome_binding_site" /gene="nagE" /locus_tag="STM0685" /note="putative RBS for nagE; RegulonDB:STMS1H001002" CDS 745261..747213 /gene="nagE" /locus_tag="STM0685" /EC_number="2.7.1.191" /note="similar to E. coli PTS system, N-acetylglucosamine-specific enzyme IIABC (AAC73773.1); Blastp hit to AAC73773.1 (648 aa), 92% identity in aa 1 - 647" /codon_start=1 /transl_table=11 /product="PTS N-acetyl glucosamine transporter subunit IIABC" /protein_id="NP_459670.1" /db_xref="GI:16764055" /db_xref="GeneID:1252205" /translation="MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNMPFIAQA GGSIFDNLALVFAIGVASSWSKDSAGAAALAGAVGYFVMTKAMVTINPEINMGVLAGI ITGLVGGAVYNRWSGIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHGIH AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINR FYAGDGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAITAFLTGV TEPLEFLFMFLAPLLYLLHAILTGISLFVATLLGIHAGFSFSAGAIDYVLMYNLPAAS NNVWMLLVMGVVFFIIYFLLFSAVIRMFNLKTPGREDKVDEMVTEEANSNTEEGLTQL ATSYIAAVGGTDNLKAIDACITRLRLTVNDSARVNDAACKRLGASGVVKLNKQTIQVI VGAKAESIGDEMKKVVARGPVAAASADAAHVATPAPAAKPQAVPNAVTIAELVSPITG EVVALDQVPDEAFASKAVGDGVAVKPTDKTVVSPAAGTIVKIFNTNHAFCLETEKGAE IVVHMGIDTVALNGQGFKRLVEEGAEVTAGQPVLELDLDFLNANARSMISPVVCSNSD DFSALVIKADGHVVAGKTPLYEIKSK" gene 747412..749091 /gene="glnS" /locus_tag="STM0686" /db_xref="GeneID:1252206" regulatory 747412..747417 /regulatory_class="ribosome_binding_site" /gene="glnS" /locus_tag="STM0686" /note="putative RBS for glnS; RegulonDB:STMS1H001003" CDS 747424..749091 /gene="glnS" /locus_tag="STM0686" /EC_number="6.1.1.18" /note="similar to E. coli glutamine tRNA synthetase (AAC73774.1); Blastp hit to AAC73774.1 (554 aa), 96% identity in aa 1 - 554" /codon_start=1 /transl_table=11 /product="glutamine--tRNA ligase" /protein_id="NP_459671.1" /db_xref="GI:16764056" /db_xref="GeneID:1252206" /translation="MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGH AKSICLNFGIAQDYQGQCNLRFDDTNPVKEDIEYVDSIKNDVEWLGFHWSGDIRYSSD YFDQLHAYAVELINKGLAYVDELTPEQIREYRGTLTAPGKNSPFRDRSVEENLALFEK MRTGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCI SDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRE DLNENAPRAMAVIDPVKLVIENYPQGESEMVTMPNHPNKPEMGSREVPFSGEIWIDRA DFREEANKQYKRLVMGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPAD GRKVKGVIHWVSAAHALPIEIRLYDRLFSVPNPGAAEDFLSVINPESLVIKQGYGEPS LKAAVAGKAFQFEREGYFCLDSRYATADKLVFNRTVGLRDTWAKAGE" gene 749525..750943 /gene="ybfM" /locus_tag="STM0687" /db_xref="GeneID:1252207" regulatory 749525..749530 /regulatory_class="ribosome_binding_site" /gene="ybfM" /locus_tag="STM0687" /note="putative RBS for ybfM; RegulonDB:STMS1H001004" CDS 749537..750943 /gene="ybfM" /locus_tag="STM0687" /note="similar to E. coli orf, hypothetical protein (AAC73775.1); Blastp hit to AAC73775.1 (468 aa), 91% identity in aa 1 - 468" /codon_start=1 /transl_table=11 /product="chitoporin" /protein_id="NP_459672.1" /db_xref="GI:16764057" /db_xref="GeneID:1252207" /translation="MRTFSGKRSTLALAIAGITAMSGWIVVPQAQASGFFDDSTLTGG IYYWQRERDRKDVTDGDKYKTNLSHATWNANLDFQSGYAADMFGLDIAAFTAIEMAEN GDSGHPNEIAFSKKNKGYDEDYSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLL APHWSFMPGTYQGAEAGASFDYGDAGALSFSYMWTNEYKAPWHTEMDKFYQADKKTNV DYLHSIGAKYDFKNDLVLEAAFGQSEGYVDQYFAKASYKFDLGGNPFTTSYQFYGARD KVDDRSVNDIYDGTAWLQALTFGYKVAEVVDLRLEGTWVKADGQQGYFLQRMTPTYAS SNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGWAVGASYVYAWDAKPATWQS NPDAYYDKNRTIEESSYSLDAVYTLQEGRAKGTMFKLHFTEYDNHSNIPSWGGGYGNI FQDERDVKFIVIAPFTIF" gene 750981..751325 /gene="ybfN" /locus_tag="STM0688" /db_xref="GeneID:1252208" regulatory 750981..750986 /regulatory_class="ribosome_binding_site" /gene="ybfN" /locus_tag="STM0688" /note="putative RBS for ybfN; RegulonDB:STMS1H001005" CDS 750993..751325 /gene="ybfN" /locus_tag="STM0688" /note="similar to E. coli orf, hypothetical protein (AAC73776.1); Blastp hit to AAC73776.1 (108 aa), 84% identity in aa 1 - 107" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459673.1" /db_xref="GI:16764058" /db_xref="GeneID:1252208" /translation="MKKILLIASMTAGLTACASSPAPEEDSRLKEAYSACINTAQGSP EKIEACQSVLNVLKKERRHQQFANEESVRVLDYQQCIQATRTGNDQAVKADCDKVWQE IRSHNNVQ" gene complement(751374..752685) /gene="citA" /locus_tag="STM0689" /db_xref="GeneID:1252209" CDS complement(751374..752678) /gene="citA" /locus_tag="STM0689" /note="citrate-proton symporter (citrate transporter). (SW:CIT1_SALTY)" /codon_start=1 /transl_table=11 /product="citrate-proton symporter" /protein_id="NP_459674.1" /db_xref="GI:16764059" /db_xref="GeneID:1252209" /translation="MAQHTPATSRAGTFGAILRVTSGNFLEQFDFFLFGFYATYIART FFPAESEFASLMLTFAVFGSGFLMRPVGAIVLGAYIDRIGRRKGLMVTLAIMGCGTLL IALVPGYQTIGLAAPALVLLGRLLQGFSAGVELGGVSVYLSEIATPGNKGFYTSWQSA SQQVAIVVAALIGYSLNITLGHDAISEWGWRIPFFIGCMIIPLIFVLRRSLQETEAFL QRKHRPDTREIFATIAKNWRIITAGTLLVAMTTTTFYFITVYTPTYGRTVLNLSARDS LIVTMLVGVSNFIWLPIGGAISDRIGRRAVLMGITLLALITTWPVMQWLTAAPDFTRM TLVLLWFSFFFGMYNGAMVAALTEVMPVYVRTVGFSLAFSLATAIFGGLTPAISTALV KLTGDKSSPGWWLMCAALCGLAATAMLFVRLSRGYIAAENKA" regulatory complement(752680..752685) /regulatory_class="ribosome_binding_site" /gene="citA" /locus_tag="STM0689" /note="putative RBS for citA; RegulonDB:STMS1H001006" gene complement(752729..753875) /gene="citB" /locus_tag="STM0690" /db_xref="GeneID:1252210" CDS complement(752729..753868) /gene="citB" /locus_tag="STM0690" /note="citrate utilization protein B. (SW:CIT2_SALTY)" /codon_start=1 /transl_table=11 /product="tricarballylate utilization protein B" /protein_id="NP_459675.1" /db_xref="GI:16764060" /db_xref="GeneID:1252210" /translation="MKQLEKLIIEATVLTEPEAEVERVMQVCNACRYCEGFCAVFPAM TQRLEFGKADIHYLANLCHNCGACLHACQYAPPHEFAINVPKAMAQARLETYQQYAQP AAFGALYRRAGITVALALIVGLTLFLLLAMALKGSLIHPPLAGDFYQIFPHSLLAWMF GSVFVLAIGLLMAGVIRFWREISPGVPRSAEIAEASHNALTLKYLDGGHGKGCNEADD AFTLLRRRFHHFTFYGFMLCFAATVVATGYHYVAGWEAPYPFFSLPVMLGTLGGIGLL IGPAGLLWLNLRRSPLHGDARQKPMDRGFILLLFLTSLTGLALLAGRDTSGMGILLAL HLGVVMALFLTLPYGKFAHGFFRCAALLKWAVEKRRGKHAGDTGN" gene complement(753855..755263) /locus_tag="STM0691" /db_xref="GeneID:1252211" CDS complement(753855..755258) /locus_tag="STM0691" /codon_start=1 /transl_table=11 /product="FAD-binding dehydrogenase" /protein_id="NP_459676.1" /db_xref="GI:16764061" /db_xref="GeneID:1252211" /translation="MVDVLVIGGGNAALCAALTAREAGASVLLLEAAPREWRGGNSQH TRNLRCMHDAPQDVLVESYPEEEFWQDLWRVTDGNTNEALARLVIRTSSQCRDWMRKH GVNFQPPLSGALHVARTNAFFMGGGKALVNAYYRSAERLGVQVRYNTPVHALELHDGE FVAALAGSERITAKACVLAAGGFESNREWLREAWGENARGEWPADNFLIRGTRFNQGV LLKFMMDAGADIIGDPSQSHCVAIDARAPLYDGGICTRVDCVSLGIVVNRDAERFYDE GEDFWPKRYAIWGRLVAQQPGQIGYSIIDSKAIGHFMPPVFPGAQANTLAELACQLGL DAEKFTHTVTQYNQACQPGHFDHTLLDDCATKNLTPAKTHWARPLDAPPYYGYALRPG ITFTYLGLKVNERAAVHFAGHPSRNLFVAGEMMAGNVLGKGYTAGVGMSIGTTFGRIA GIEAARAAHKEAQHETA" regulatory complement(753870..753875) /regulatory_class="ribosome_binding_site" /gene="citB" /locus_tag="STM0690" /note="putative RBS for citB; RegulonDB:STMS1H001007" regulatory complement(755258..755263) /regulatory_class="ribosome_binding_site" /locus_tag="STM0691" /note="putative RBS for STM0691; RegulonDB:STMS1H001008" gene complement(755356..756295) /locus_tag="STM0692" /db_xref="GeneID:1252212" CDS complement(755356..756282) /locus_tag="STM0692" /note="similar to E. coli nitrogen assimilation control protein (AAC75050.1); Blastp hit to AAC75050.1 (305 aa), 32% identity in aa 1 - 301" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_459677.1" /db_xref="GI:16764062" /db_xref="GeneID:1252212" /translation="MELRQLRYFVRIIETGSMGSAAQDLDIGVSALSQQMSRLENELA IRLLQRTSRGVTPTNAGLAFYSQAQLALRHADDAILAAREARLSGHVSVGMAPSTASI LGIPFIHAMQENYADVRLHVVESLSGNLERMINTRQIDLAIVFQKDKILRWSARPILE EQLFLIGSHALLAALPDNPITPEQLAGIPLIMPSQGHGLRGRLDAVCQEHALNVEIVA EIDGLALLMRAVRDGLGATLQPGAAISHLDNDALRVIGVHNPVLSRPNFLVSLSDDEL TPAGLAARVVLTKVMRQLVDAGEWPGATLYAY" regulatory complement(756290..756295) /regulatory_class="ribosome_binding_site" /locus_tag="STM0692" /note="putative RBS for STM0692; RegulonDB:STMS1H001009" gene complement(756397..757003) /gene="fur" /locus_tag="STM0693" /db_xref="GeneID:1252213" CDS complement(756397..756849) /gene="fur" /locus_tag="STM0693" /note="similar to E. coli negative regulator (AAC73777.1); Blastp hit to AAC73777.1 (148 aa), 99% identity in aa 1 - 146" /codon_start=1 /transl_table=11 /product="ferric iron uptake transcriptional regulator" /protein_id="NP_459678.1" /db_xref="GI:16764063" /db_xref="GeneID:1252213" /translation="MTDNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLI DMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELTQQHHHDHLICLDCGKVIEF SDDSIEARQREIAAKHGIRLTNHSLYLYGHCAEGDCREDEHAHDDATK" regulatory complement(756859..756864) /regulatory_class="ribosome_binding_site" /gene="fur" /locus_tag="STM0693" /note="putative RBS for fur; RegulonDB:STMS1H001010" regulatory complement(756979..756987) /regulatory_class="minus_10_signal" /gene="fur" /locus_tag="STM0693" /note="putative -10_signal for fur; RegulonDB:STMLTH004694" protein_bind complement(756981..757001) /gene="fur" /locus_tag="STM0693" /note="putative binding site for CRP, RegulonDB: STMS1H000047" /bound_moiety="CRP" regulatory complement(756995..757003) /regulatory_class="minus_35_signal" /gene="fur" /locus_tag="STM0693" /note="putative -35_signal for fur; RegulonDB:STMLTH004694" gene complement(757131..757676) /gene="fldA" /locus_tag="STM0694" /db_xref="GeneID:1252214" CDS complement(757131..757661) /gene="fldA" /locus_tag="STM0694" /note="similar to E. coli flavodoxin 1 (AAC73778.1); Blastp hit to AAC73778.1 (176 aa), 97% identity in aa 1 - 176" /codon_start=1 /transl_table=11 /product="flavodoxin" /protein_id="NP_459679.1" /db_xref="GI:16764064" /db_xref="GeneID:1252214" /translation="MAITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDL EGYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDAL GTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKW VKQVSAELHLDDILNA" protein_bind complement(757165..757185) /gene="fldA" /locus_tag="STM0694" /note="putative binding site for Fur, RegulonDB: STMS1H000187" /bound_moiety="Fur" regulatory complement(757671..757676) /regulatory_class="ribosome_binding_site" /gene="fldA" /locus_tag="STM0694" /note="putative RBS for fldA; RegulonDB:STMS1H001011" gene complement(757812..758122) /gene="ybfE" /locus_tag="STM0695" /db_xref="GeneID:1252215" CDS complement(757812..758105) /gene="ybfE" /locus_tag="STM0695" /note="similar to E. coli orf, hypothetical protein (AAC73779.1); Blastp hit to AAC73779.1 (120 aa), 90% identity in aa 24 - 120" /codon_start=1 /transl_table=11 /product="LexA regulated protein" /protein_id="NP_459680.1" /db_xref="GI:16764065" /db_xref="GeneID:1252215" /translation="MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKR DKVRGLKRVELKLNAQAVDALNELAEARNISRSELIEEILMKQLMALRGQGLV" regulatory complement(758117..758122) /regulatory_class="ribosome_binding_site" /gene="ybfE" /locus_tag="STM0695" /note="putative RBS for ybfE; RegulonDB:STMS1H001012" gene complement(758239..759009) /gene="ybfF" /locus_tag="STM0696" /db_xref="GeneID:1252216" CDS complement(758239..759009) /gene="ybfF" /locus_tag="STM0696" /EC_number="3.1.-.-" /note="similar to E. coli orf, hypothetical protein (AAC73780.1); Blastp hit to AAC73780.1 (254 aa), 89% identity in aa 1 - 254" /codon_start=1 /transl_table=11 /product="alpha/beta hydrolase" /protein_id="NP_459681.1" /db_xref="GI:16764066" /db_xref="GeneID:1252216" /translation="MKLNIRAQSAQNLHNNSPIVLVHGLFGSLDNLGVLARDLVTDHD IIQVDMRNHGLSPRDPVMDYPAMAQDLLDTLDAQQIEKATFIGHSMGGKAVMALTALA PDRIDRLVAIDIAPVDYHVRRHDRIFAAINAVSESDATSRQQAAGIMRQHLNEEGVIQ FLLKSWAEGEWRFNVPVLWEQYPHIVGWETIPPWEHPALFIPGGNSPYVTEAYRDTLL AQFPLARAHVIAGAGHWVHAEKPEAVLRAIRRYLHDKR" gene 759184..759736 /gene="seqA" /locus_tag="STM0697" /db_xref="GeneID:1252217" regulatory 759184..759189 /regulatory_class="ribosome_binding_site" /gene="seqA" /locus_tag="STM0697" /note="putative RBS for seqA; RegulonDB:STMS1H001013" CDS 759194..759736 /gene="seqA" /locus_tag="STM0697" /note="inhibits open complex formation; mutation in gene alters cell membrane; similar to E. coli negative modulator of initiation of replication (AAC73781.1); Blastp hit to AAC73781.1 (181 aa), 87% identity in aa 1 - 181" /codon_start=1 /transl_table=11 /product="replication initiation regulator SeqA" /protein_id="NP_459682.1" /db_xref="GI:16764067" /db_xref="GeneID:1252217" /translation="MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSATTQPTAS AVKGTPAAQPVAEAKPVNPVKDKVRAMRELLLSDEYAEQKKAVNRFMLILTTLYSLDH HAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIE HIMQSMQFPAELIEKVCGTI" gene 759749..761401 /gene="pgm" /locus_tag="STM0698" /db_xref="GeneID:1252218" regulatory 759749..759754 /regulatory_class="ribosome_binding_site" /gene="pgm" /locus_tag="STM0698" /note="putative RBS for pgm; RegulonDB:STMS1H001014" CDS 759761..761401 /gene="pgm" /locus_tag="STM0698" /EC_number="5.4.2.2" /note="similar to E. coli phosphoglucomutase (AAC73782.1); Blastp hit to AAC73782.1 (546 aa), 97% identity in aa 1 - 546" /codon_start=1 /transl_table=11 /product="phosphoglucomutase, alpha-D-glucose phosphate-specific" /protein_id="NP_459683.1" /db_xref="GI:16764068" /db_xref="GeneID:1252218" /translation="MAIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGT SGHRGSAGRHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVL AANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPP NGGPADTNVTKVVEDRANALLAGGLQGVKRISLDAAMASGHVKAVDLVQPFVEGLADI VDMAAIQKAGLTLGVDPLGGSGIEYWKRIAEHYKLNLTLVNDQVDQTFRFMHLDKDGA IRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQ HRPLWGKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEES AGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAARFGAPSYNRLQA SATSAQKAALSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARP SGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVLKNA" gene complement(761516..762001) /locus_tag="STM0699" /db_xref="GeneID:1252219" CDS complement(761516..762001) /locus_tag="STM0699" /codon_start=1 /transl_table=11 /product="5-nitroimidazole antibiotic resistance protein" /protein_id="NP_459684.1" /db_xref="GI:16764069" /db_xref="GeneID:1252219" /translation="MSNPEREVTDIAEILAILSKHEVCRIGFNDNLCPYVVPVNFGYE YQNGRWIFYFHGARTGKKMRLLRKNPAVCIEMDGDHALLRADDPCDYSYAYTSVFATG LASILQTREEMRYGLDVIMRQTDPGKTFSYREDMMKAVCVVRIECDALTCRRHLATQS E" gene complement(762066..763399) /gene="potE" /locus_tag="STM0700" /db_xref="GeneID:1252220" CDS complement(762066..763385) /gene="potE" /locus_tag="STM0700" /note="similar to E. coli putrescine transport protein (AAC73786.1); Blastp hit to AAC73786.1 (439 aa), 94% identity in aa 1 - 439" /codon_start=1 /transl_table=11 /product="putrescine-ornithine antiporter" /protein_id="NP_459685.1" /db_xref="GI:16764070" /db_xref="GeneID:1252220" /translation="MSKPKSNKMGVVQLTILTMVNMMGSGIIMLPTKLSEVGTISIIS WLVTAVGSMALAWAFAKCGMFSRKSGGMGGYAEYAFGKSGNFMANYTYGVSLLIANVA IAISAVGYGTELFGAALTPLQIGLATIAVLWVCTIANFGGARITGQISSVTVWGVIIP VVGLCIIGWFWFSPSMYVASWNPHHVPFFSAVGSSIAMTLWAFLGLESACANADVVEN PEKNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMDLANSTAPFGLAFAQMFTPAVGKV IMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKVFSRVTKVDAPVQGMLIIVIIQT GLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKMANVPSSKAKVANFVA FVGAMYSFYALYSSGEEAMLYGSIVTFLGWTLYGLVSPRFELKNKHG" gene complement(763382..765590) /gene="speF" /locus_tag="STM0701" /db_xref="GeneID:1252221" CDS complement(763382..765580) /gene="speF" /locus_tag="STM0701" /EC_number="4.1.1.17" /note="similar to E. coli ornithine decarboxylase isozyme, inducible (AAC73787.1); Blastp hit to AAC73787.1 (732 aa), 91% identity in aa 1 - 732" /codon_start=1 /transl_table=11 /product="ornithine decarboxylase SpeF" /protein_id="NP_459686.1" /db_xref="GI:16764071" /db_xref="GeneID:1252221" /translation="MSELKIAVSRHCPDCFSTHRNIVNVDESRFIDVAAIVLSIDDIE HGKLDEIDATGYGIPVFVATHDEGRVPPEYLPRISGVFEYNESRTAFYGRQLETAASH YETQLRPPFFRALVDYVNQGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGETLFRSDLC NADVAMGDLLIHEGAPCIAQQHAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVL FDRNNHKSNHHGALLQAGATPVYLETARNPYGFIGGIDAHCFEEDYLRELISEVAPQR AREARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMADCS PLLLELNENDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQSRYVPHKRMNNAFMMH ASTSPFYPLFAALDVNAKMHEGVSGRNMWMDCVVNGIDARKLILENCHHIRPFVPELI DGKPWQSYPTSEIASDLRFFHFVPGEHWHAFEGYAEHQYFVDPCKLLLTTPGINAASG EYEDFGVPATILANFLRENGVVPEKCDLNSILFLLTPAEDMAKLQQLVALLARFEKLL EADAPLAEVLPSIYKQHEARYAGYTLRQLCQEMHDLYARHNVKQLQKEMFRKSHFPKV SMNPQEANYAYLRGEVELVRLPEAEGRIAAEGALPYPPGVLCVVPGEIWGGSVLRYFS ALEEGINLLPGFAPELQGVYIEEHDGRKQVWCYVIKPRDAQRSLLKEEKL" regulatory complement(763394..763399) /regulatory_class="ribosome_binding_site" /gene="potE" /locus_tag="STM0700" /note="putative RBS for potE; RegulonDB:STMS1H001015" regulatory complement(765585..765590) /regulatory_class="ribosome_binding_site" /gene="speF" /locus_tag="STM0701" /note="putative RBS for speF; RegulonDB:STMS1H001016" gene complement(766342..767027) /gene="kdpE" /locus_tag="STM0702" /db_xref="GeneID:1252222" CDS complement(766342..767019) /gene="kdpE" /locus_tag="STM0702" /note="regulates kdp operon encoding a high-affinity K translocating ATPase (OmpR family); similar to E. coli regulator of kdp operon (transcriptional effector) (AAC73788.1); Blastp hit to AAC73788.1 (225 aa), 91% identity in aa 1 - 224" /codon_start=1 /transl_table=11 /product="two-component system response regulator KdpE" /protein_id="NP_459687.1" /db_xref="GI:16764072" /db_xref="GeneID:1252222" /translation="MTNVLIVEDEQAIRRFLRAALEGDGLRVYEAETLQRGLLEAATR KPDLIILDLGLPDGDGIDFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLSKP FGIGELQARLRVALRRHAASPCADPIVRFSGVTVDLAARLIHRGDEEIHLTPIEFRLL AVLLNNTGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPTRPRHFITETG IGYRFMP" gene complement(767016..769717) /gene="kdpD" /locus_tag="STM0703" /db_xref="GeneID:1252223" CDS complement(767016..769700) /gene="kdpD" /locus_tag="STM0703" /EC_number="2.7.3.-" /note="regulates kdp operon (high-affinity potassium transport system); similar to E. coli sensor for high-affinity potassium transport system (AAC73789.1); Blastp hit to AAC73789.1 (894 aa), 89% identity in aa 1 - 894" /codon_start=1 /transl_table=11 /product="two-component system sensor histidine kinase KdbD" /protein_id="NP_459688.1" /db_xref="GI:16764073" /db_xref="GeneID:1252223" /translation="MNDEPLRPDPDRLLEQTPPPHRGKLKIFFGACAGVGKTWAMLAQ AQRLRAQGLDVVIGVVETHGRKETAALLDGLTILPPKRHSHRGRQIREFDLDAALARR PALILMDELAHSNAPGSRHPKRWQDIEELLEAGIDVFTTVNVQHLESLNDVVSGVTGI QVRETVPDPFFDAADEVVLVDLPPDDLRQRLNEGKVYIAGQAERAIEHFFRKGNLIAL RELALRRTADRVDDQMRAWRAHPGEEKVWHTRDAILLCIGHNTGSEKLVRTAARLASR LGSVWHAVYVETPTLHRLPEKQRRAILSALRLAQELGAETATLSDPAEEKAVVRYARE HNLGKIVMGRPASRRWWRRDAFADRLARRAPDLDQVIVALEEPPARALAQTPDNRPFK EKWRGQIQGCLVAVALCAITTLIAMQWLVTFDAANLVMLYLLGVVVIALLYGRWPSVV ATVINVASFDLFFIAPRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVRYQARVARYR EQRTRHLYEMSKALAVGRSEHDIAATSERFIASTFQARSQILLPDANGKLLPLTHQQG MTPWDDAIARWSFDKGQPAGAGTDTLPGVPYQILPLKSADKTYGLAIVEPGNLRQLMV PEQQRLLETFTLLVANALERLTLTASEEQARLASERESIRNALLAALSHDLRTPLTVL FGQAEILTLDLASAGSPHARQASEIRQHILNTTRLVNNLLDMARIQSGGFNLKKEWLT LEEVVGSALQMLEPGLLHPITLSLPQQLTLIHVDGPLFERVLINLLENAVKYAGPQAS IGIDAAVKDDRLQLDVWDNGPGIPAGQEQKIFDKFARGNKESAVPGVGLGLAICHAIV EVHGGTLTAYNRPQGGACFRVTLPQGKPPELDDFHEDM" regulatory complement(767022..767027) /regulatory_class="ribosome_binding_site" /gene="kdpE" /locus_tag="STM0702" /note="putative RBS for kdpE; RegulonDB:STMS1H001017" gene complement(769697..770291) /gene="kdpC" /locus_tag="STM0704" /db_xref="GeneID:1252224" CDS complement(769697..770281) /gene="kdpC" /locus_tag="STM0704" /EC_number="3.6.3.12" /note="similar to E. coli high-affinity potassium transport system (AAC73790.1); Blastp hit to AAC73790.1 (190 aa), 77% identity in aa 1 - 188" /codon_start=1 /transl_table=11 /product="potassium-transporting ATPase subunit C" /protein_id="NP_459689.1" /db_xref="GI:16764074" /db_xref="GeneID:1252224" /translation="MIGLRPAFSTMLFLLLLTGGVYPLLTTALGQWWFPWQANGSLIH KDNVIRGSALIGQSFTAAGYFHGRPSATADTPYNPLASGGSNLAASNPELDAQIQARV AALRAANPQASSAVPVELATASASGLDNNLTPGAAAWQIPRVAAARQLPVEQVAQLVA EYTHRPLARFLGQPVVNIVELNLALDALQGHRAK" regulatory complement(769712..769717) /regulatory_class="ribosome_binding_site" /gene="kdpC" /locus_tag="STM0704" /note="putative RBS for kdpD; RegulonDB:STMS1H001018" regulatory complement(770286..770291) /regulatory_class="ribosome_binding_site" /gene="kdpC" /locus_tag="STM0704" /note="putative RBS for kdpC; RegulonDB:STMS1H001019" gene complement(770290..772353) /gene="kdpB" /locus_tag="STM0705" /db_xref="GeneID:1252225" CDS complement(770290..772338) /gene="kdpB" /locus_tag="STM0705" /EC_number="3.6.3.12" /note="similar to E. coli ATPase of high-affinity potassium transport system, B chain (AAC73791.1); Blastp hit to AAC73791.1 (682 aa), 91% identity in aa 1 - 681" /codon_start=1 /transl_table=11 /product="potassium-transporting ATPase subunit B" /protein_id="NP_459690.1" /db_xref="GI:16764075" /db_xref="GeneID:1252225" /translation="MSRKQLALFEPVLLVQALTDAVKKLSPRAQWRNPVMFVVWAGSV LTTLLTLAMVTGQIAGSALFTGIISLWLWFTVLFANFAEALAEGRSKAQANSLKGVKK TAFARRLRAPRHDAQADNVPAAELRKGDIVLVKAGDIIPCDGEVIEGGASVDESAITG ESAPVIRESGGDFASVTGGTRILSDWLVIACSVNPGETFLDRMIAMVEGAQRRKTPNE IALTILLIALTIVFLLATATLWPFSAWGGNAVSVTVLVALLVCLIPTTIGGLLSAIGV AGMSRMLGANVIATSGRAVEAAGDVDVLLLDKTGTITLGNRQASDFIPARGVDERTLA DAAQLASLADETPEGRSIVILAKQRFNLRERDVQSLHATFVPFTAQSRMSGINIDNRM IRKGSVDAIRRHVESNGGHFPADVEQNVENVARLGATPLVVVEGAHVLGVIALKDIVK GGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQA EGRLVAMTGDGTNDAPALAQADVAVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVHIGK QMLMTRGSLTTFSIANDVAKYFAIIPAAFAATYPQLNALNVMGLHSPNSAILSAVIFN ALIIIFLIPLALKGVSYKPLSASAMLRRNLWIYGLGGLVVPFIGIKVIDVLLTLLGLA " regulatory complement(772348..772353) /regulatory_class="ribosome_binding_site" /gene="kdpB" /locus_tag="STM0705" /note="putative RBS for kdpB; RegulonDB:STMS1H001020" gene complement(772359..774130) /gene="kdpA" /locus_tag="STM0706" /db_xref="GeneID:1252226" CDS complement(772359..774038) /gene="kdpA" /locus_tag="STM0706" /EC_number="3.6.3.12" /note="similar to E. coli ATPase of high-affinity potassium transport system, A chain (AAC73792.1); Blastp hit to AAC73792.1 (557 aa), 85% identity in aa 1 - 557" /codon_start=1 /transl_table=11 /product="potassium-transporting ATPase subunit KdpA" /protein_id="NP_459691.1" /db_xref="GI:16764076" /db_xref="GeneID:1252226" /translation="MAAQGFLLIASFLLILLVLAKPLGSGLARLIAAVPLPGVAGIER ILWRTLGITDHEMNWRQYLLALLTLNLLGLGILFCLLFWQEWLPLNPQRLPGLSGDLA LNTAVSFVTNTNWQAYSGESTLSYFSQMAGLTVQNFLSAATGIAVVFALIRAFTRQNV HTLGNAWQDLVRITLWILFPVALIIALFFIQQGVPQNLSAYQPITTLEGAKQLLPMGP VASQEAIKMLGTNGGGFFNANSSHPFENPTALTNLAQMLAIFLIPAALCFAFGEAAGD RCQGRALLWAMSFIFVVCVAVVMWAEVQGNPHLLAAGADSSVNMEGKETRFGVLASSL FAVVTTAASCGAVNAMHDSFTALGGMVPMWLMQIGEVVFGGVGSGLYGMLLFVLLAVF IAGLMIGRTPEYLGKKIDVREMKMTALAILVTPMLVLLGSALAMMTDAGRSAMLNPGP HGFSEVLYAVSSAANNNGSAFAGLSANSPFWNCLLAFCMFVGRFGVIIPVMAIAGSLV SKKVQPASQGTLATHGALFIGLLIGTVLLVGALTFIPALALGPVAEHFSLP" gene complement(774038..774134) /locus_tag="STM0707" /db_xref="GeneID:1252227" CDS complement(774038..774127) /locus_tag="STM0707" /codon_start=1 /transl_table=11 /product="potassium-transporting ATPase subunit F" /protein_id="NP_459692.1" /db_xref="GI:16764077" /db_xref="GeneID:1252227" /translation="MSAGVITGIVLVFLLLGYLVYALINAEAF" regulatory complement(774047..774052) /regulatory_class="ribosome_binding_site" /locus_tag="STM0707" /note="putative RBS for kdpA; RegulonDB:STMS1H001021" regulatory complement(774106..774114) /regulatory_class="minus_10_signal" /locus_tag="STM0707" /note="putative -10_signal for kdpA; RegulonDB:STMLTH004695" regulatory complement(774122..774130) /regulatory_class="minus_35_signal" /locus_tag="STM0707" /note="putative -35_signal for kdpA; RegulonDB:STMLTH004695" regulatory complement(774129..774134) /regulatory_class="ribosome_binding_site" /locus_tag="STM0707" /note="putative RBS for STM0707; RegulonDB:STMS1H001022" protein_bind complement(774208..774228) /note="putative binding site for KdpE, RegulonDB: STMS1H000240" /bound_moiety="KdpE" gene 774450..774670 /gene="ybfA" /locus_tag="STM0708" /db_xref="GeneID:1252228" regulatory 774450..774455 /regulatory_class="ribosome_binding_site" /gene="ybfA" /locus_tag="STM0708" /note="putative RBS for ybfA; RegulonDB:STMS1H001023" CDS 774464..774670 /gene="ybfA" /locus_tag="STM0708" /note="similar to E. coli orf, hypothetical protein (AAC73793.1); Blastp hit to AAC73793.1 (68 aa), 82% identity in aa 1 - 68" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459693.1" /db_xref="GI:16764078" /db_xref="GeneID:1252228" /translation="MEHYKDYPAHVIFVRRAFAVIAGVLALPVMLFWKDRARFYSYLH RVWSKTSDKPVWMAQAEKATCDFY" gene 774771..776202 /gene="phrB" /locus_tag="STM0709" /db_xref="GeneID:1252229" regulatory 774771..774776 /regulatory_class="ribosome_binding_site" /gene="phrB" /locus_tag="STM0709" /note="putative RBS for phrB; RegulonDB:STMS1H001024" CDS 774781..776202 /gene="phrB" /locus_tag="STM0709" /EC_number="4.1.99.3" /note="deoxyribodipyrimidine photolyase. (SW:PHR_SALTY)" /codon_start=1 /transl_table=11 /product="deoxyribodipyrimidine photo-lyase" /protein_id="NP_459694.1" /db_xref="GI:16764079" /db_xref="GeneID:1252229" /translation="MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQA HDMAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFY NYQYEFNERQRDAAVEKTLPSVICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLK RLKEDIPPCVPAPKIRVSGALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCA QGADEYALRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSVWLNE LIWREFYRHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQ LNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGT DAAPYFRIFNPTTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPR PIVEHKQARIATLSAYEAARKGA" gene complement(776241..777733) /gene="ybgH" /locus_tag="STM0710" /db_xref="GeneID:1252230" CDS complement(776241..777722) /gene="ybgH" /locus_tag="STM0710" /note="similar to E. coli putative transport protein (AAC73803.1); Blastp hit to AAC73803.1 (493 aa), 88% identity in aa 1 - 493" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_459695.1" /db_xref="GI:16764080" /db_xref="GeneID:1252230" /translation="MNKQASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDD NHAYELFSAYCSLVYVTPILGGYLADKVLGNRMAVMLGAFLMAIGHLVLGASEIAPTF LYLSLAIIVCGYGLFKSNISCLLGELYQPEDPRRDGGFSLLYAAGNIGSIVAPIACGY VQEEYSWAMGFALAAIGMLAGLVIFLCGNRHFTHTTGVNKAVLCARNYLLPNWGWLLI LLVAAPLLITVLFWKEWSVYALIVATAIGLVVLAKIYRQAQTAKQRKELGLIVTLTLF SMLFWAFAQQGGSSISLYIDRFVNRDILGYSVPTAMFQSVNAFAVMLCGVVLAWLVKE SVSGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAAYGHSSMPLMVLGLAVMGFAEL FIDPVAMSQITRIDIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQSAFDASGAVNY AINAYVDVFEQITWGALACVGVVLLIWLYQSFKFKSRALAVES" regulatory complement(777728..777733) /regulatory_class="ribosome_binding_site" /gene="ybgH" /locus_tag="STM0710" /note="putative RBS for ybgH; RegulonDB:STMS1H001025" gene 778039..778794 /gene="ybgI" /locus_tag="STM0711" /db_xref="GeneID:1252231" regulatory 778039..778044 /regulatory_class="ribosome_binding_site" /gene="ybgI" /locus_tag="STM0711" /note="putative RBS for ybgI; RegulonDB:STMS1H001026" CDS 778051..778794 /gene="ybgI" /locus_tag="STM0711" /note="similar to E. coli orf, hypothetical protein (AAC73804.1); Blastp hit to AAC73804.1 (247 aa), 97% identity in aa 1 - 247" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459696.1" /db_xref="GI:16764081" /db_xref="GeneID:1252231" /translation="MKNTELEQLINDKLNSAAISDYAPNGLQVEGKETVQKIVTGVTA SQALLDEAVRLQADAVIVHHGYFWKGESPVIRGMKRRRLKTLLANDINLYGWHLPLDA HPELGNNAQLAALLGITVKGEIEPLVPWGELSMPVPGLELASWIEARLGRKPLWCGDT GPENVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHAT ERGGIRALSEWLNENTALDVTFIDIPNPA" gene 778799..779466 /gene="ybgJ" /locus_tag="STM0712" /db_xref="GeneID:1252232" regulatory 778799..778804 /regulatory_class="ribosome_binding_site" /gene="ybgJ" /locus_tag="STM0712" /note="putative RBS for ybgJ; RegulonDB:STMS1H001027" CDS 778810..779466 /gene="ybgJ" /locus_tag="STM0712" /note="similar to E. coli putative carboxylase (AAC73805.1); Blastp hit to AAC73805.1 (218 aa), 86% identity in aa 1 - 218" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459697.1" /db_xref="GI:16764082" /db_xref="GeneID:1252232" /translation="MQRARCYLLGETAVVLELEPPITLASQKRIWRLTQRLVDMPNVV EAIPGMNNITVILREPQTLALDAIERLQRWWEESEALEPDSRSVEIPVIYGGAGGPDL AAVARHSGLSEKQVVELHASVEYVVWFLGFQPGFPYLGNLPEPLHMPRRAEPRLQVPA GSVGIGGAQTGIYPLSTPGGWQLIGLTPLKLFDPMRETPVLLRPGDSVRFVPQKEGIC " gene 779449..780392 /gene="ybgK" /locus_tag="STM0713" /db_xref="GeneID:1252233" regulatory 779449..779454 /regulatory_class="ribosome_binding_site" /gene="ybgJ" /locus_tag="STM0712" /note="putative RBS for ybgK; RegulonDB:STMS1H001028" CDS 779460..780392 /gene="ybgK" /locus_tag="STM0713" /note="similar to E. coli putative carboxylase (AAC73806.1); Blastp hit to AAC73806.1 (310 aa), 84% identity in aa 1 - 310" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459698.1" /db_xref="GI:16764083" /db_xref="GeneID:1252233" /translation="MLNIIRAGIYTSVQDSGRHGFRQSGLSHCGALDKPAFQTANLLV GNDANAPALEITLGQLVVEFENETWFALTGAGCEAQLDDQPVWTGWRLPVKAGQRLTL HRPLHGMRSYLAVAGGIAVPEVMGSYSTDLKSGIGGLEGRLLKDGDRLATGKPSRQFS GPQGVKQLLWGNRIRALPGPEYREFDRASQEAFWRSPWQLSPQSNRMGYRLQGQSLTR TTDRELLSHGLLPGVVQVPYNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQ PIHFVQCSLEEALNARRERQRYLEQLTWRLQHEH" gene 780368..781116 /gene="ybgL" /locus_tag="STM0714" /db_xref="GeneID:1252234" regulatory 780368..780373 /regulatory_class="ribosome_binding_site" /gene="ybgL" /locus_tag="STM0714" /note="putative RBS for ybgL; RegulonDB:STMS1H001029" CDS 780382..781116 /gene="ybgL" /locus_tag="STM0714" /note="similar to E. coli putative lactam utilization protein (AAC73807.1); Blastp hit to AAC73807.1 (244 aa), 80% identity in aa 1 - 244" /codon_start=1 /transl_table=11 /product="LamB/YcsF family protein" /protein_id="NP_459699.1" /db_xref="GI:16764084" /db_xref="GeneID:1252234" /translation="MNIDLNADLGEGCASDSELLTLVSSANIACGFHAGDAQTMLTCV REALKNGVAIGAHPSFPDRDNFGRTAMVLPPETVYAQTLYQIGALGAIVQAQGGVMRH VKPHGMLYNQAAKDPHLAQAIAKAVHDYDPSLILVGLAGSELIRAGERHRLVTRQEVF ADRGYQADGSLVPRMQPGALIHDEEQALAQTLDMVQAGRVKSVTGVWTTVTAQTVCIH GDGEYALAFARRLRAAFNARNIHVIA" gene 781440..781571 /locus_tag="STM0715" /db_xref="GeneID:1252235" CDS 781440..781571 /locus_tag="STM0715" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459700.1" /db_xref="GI:16764085" /db_xref="GeneID:1252235" /translation="MTTYQEIEARLIRCFTITSWIACQIASYMDFKLFTHSNFFSEN" gene 781618..782197 /locus_tag="STM0716" /db_xref="GeneID:1252236" regulatory 781618..781623 /regulatory_class="ribosome_binding_site" /locus_tag="STM0716" /note="putative RBS for STM0716; RegulonDB:STMS1H001030" CDS 781631..782197 /locus_tag="STM0716" /note="similar to E. coli recombinase involved in phase variation; regulator for fimA (AAC77268.1); Blastp hit to AAC77268.1 (200 aa), 60% identity in aa 9 - 192" /codon_start=1 /transl_table=11 /product="DNA recombinase" /protein_id="NP_459701.1" /db_xref="GI:16764086" /db_xref="GeneID:1252236" /translation="MKRKYLTQEEIEKLLSATDRMPFPERNRCLILMAFIHGFRASEL LGLRLSDIDLAGRQLYIRRLKNGFSTCHPLLPDEYNVLKSWLRARKYLEKGADGDWLF LSLRRHPLSRQQFFYILREAGRLAELTIAPHPHMLRHACGYALADKGIDTRLIQDYLG HRNIQHTVRYTASNAGRFHGIWRKKRRV" gene 782650..782992 /locus_tag="STM0717" /db_xref="GeneID:1252237" regulatory 782650..782655 /regulatory_class="ribosome_binding_site" /locus_tag="STM0717" /note="putative RBS for STM0717; RegulonDB:STMS1H001031" CDS 782657..782992 /locus_tag="STM0717" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459702.1" /db_xref="GI:16764087" /db_xref="GeneID:1252237" /translation="MQPKSRTGQGVREQCLDRARRHFSYRHGMAPGPRKGADMLFPQH EAAVAGAVPGRQWPEENNLMTQEYAEMSTGRGGTSKCRYSMGAKIFLLLLAVSTVAAL FSLYQVLTY" gene 782988..783734 /locus_tag="STM0718" /db_xref="GeneID:1252238" regulatory 782988..782993 /regulatory_class="ribosome_binding_site" /locus_tag="STM0718" /note="putative RBS for STM0718; RegulonDB:STMS1H001032" CDS 782994..783734 /locus_tag="STM0718" /codon_start=1 /transl_table=11 /product="transport protein" /protein_id="NP_459703.1" /db_xref="GI:16764088" /db_xref="GeneID:1252238" /translation="MQTLTRVLPPLRLIMFCQSGENPTQFPDTGGLCVEDCVRLRTPE GLLDRLRRWPGAMVISAGRPSTQLLLWQQVFLRYPRTVVFCSSNAFLPVDVSVEGYFR HLRLIKRAMSVRVLARMAELAIWSSLQTSPYEEEMKSALSVPELVMEINSRTLVRLLS ERLPKQGRRVLGLLLSGCSPEMTARMLGTGVRQVWLAEQTLKQRWDIPTGVPLSDAVR IRIPDVGPDISQQSGLVKTGAGNAPDLC" gene 784020..785171 /locus_tag="STM0719" /db_xref="GeneID:1252239" CDS 784020..785171 /locus_tag="STM0719" /EC_number="5.4.99.9" /note="similar to E. coli UDP-galactopyranose mutase (AAC75097.1); Blastp hit to AAC75097.1 (367 aa), 39% identity in aa 5 - 366" /codon_start=1 /transl_table=11 /product="putative UDP-galactopyranose mutase" /protein_id="NP_459704.1" /db_xref="GI:16764089" /db_xref="GeneID:1252239" /translation="MQRKKILIVGAGLSGAVIARQLAEQGHVVNIIDQRSHIGGNAYD ARDEHTGIMVHVYGPHIFHTDNETVWNYVNKYAEMMPYINKVKATVNGQVFSLPINLH TINQFFGVACSPDDARKLLLQKCDSTILEPQNFEQQALRFIGKELYEAFFKGYTIKQW GLHPSALPASVLKRIPVRFNYDDNYFNHKFQGIPKFGYTQMVKSIVEHENIAVELCRS FTQEMRTNYDHVFFSGALDAFYSCQYGRLEYRTLDFKKIICQSDYQGCAVMNYCSIDT PYTRITEHKYFSPWERHEASICYQEYSRECEAGDIPYYPVRRADKMDLLNKYLSRAKK EKNITFIGRLGTYRYLDMDITIAEALQTADVYLTSLYEQKEMPAFTVTV" gene 785168..786064 /locus_tag="STM0720" /db_xref="GeneID:1252240" CDS 785168..786064 /locus_tag="STM0720" /codon_start=1 /transl_table=11 /product="putative glycosyl transferase" /protein_id="NP_459705.1" /db_xref="GI:16764090" /db_xref="GeneID:1252240" /translation="MMKCTALIVTFNRLEKLKKSVRETVKAGFSSIVIVNNGSSDGTR EWLSSLSEPGITILNLKDNLGGAGGFKVGSQYICSYSNADWVFFYDDDAYPEINILKH FSLLDTSRYRIFASRVQDTYGRSCRMNLPFIRVPSTVFETIYYAMRPERFSPVRTQVT DVQTVSFVGMIIDRKVLNNHLNDIHDELFLYYDDFFFGYKLVLSGQKIRYSPEIKFIH DISIHGKCICPEWKVYYLCRNLLLLRKLLPVPRIFSVLSIVLRLSKYLAILPWQRKKF RYLYFIWQGILHGLKGISGKYH" gene 786070..787210 /locus_tag="STM0721" /db_xref="GeneID:1252241" regulatory 786070..786075 /regulatory_class="ribosome_binding_site" /locus_tag="STM0721" /note="putative RBS for STM0721; RegulonDB:STMS1H001033" CDS 786077..787210 /locus_tag="STM0721" /note="similar to E. coli putative colanic acid biosynthesis glycosyl transferase (AAC75105.1); Blastp hit to AAC75105.1 (406 aa), 25% identity in aa 199 - 399" /codon_start=1 /transl_table=11 /product="glycosyltransferase family 1 protein" /protein_id="NP_459706.1" /db_xref="GI:16764091" /db_xref="GeneID:1252241" /translation="MKRLCYFVNSDWYFDLHWTERAIAARDAGYEIHIISHFIGEEII KKFKTLGFICHNVSLVAQSFNMFVFFRAFLNARKIIKEINPDLLHCITLKPCLIGGVS ARRSNSPVVISFVGLGRIFLYNTVPMRILRALTVLVYKYIAGNKRGVFIFEHDKDRRK ISRLVGIDYHKTIVIEGAGINPDIYKFSIEKKHEIPIVLFASRMLWSKGLGDLIEAKK ILRQKNIHFVLNVAGILAEDDKDAIPLELIHHWHNEGLINWLGRSSNVYELIQKSNIV ALPSIYPEGVPRLLLEASSVGRACIAYDTGGCDSLIIHNYNGLIVKSNSAQELAVELE YLLKNPQIRLEMGANGRKRVKELFSSILVINKTLQIYKDTIGC" gene 787333..788109 /locus_tag="STM0722" /db_xref="GeneID:1252242" regulatory 787333..787338 /regulatory_class="ribosome_binding_site" /locus_tag="STM0722" /note="putative RBS for STM0722; RegulonDB:STMS1H001034" CDS 787339..788109 /locus_tag="STM0722" /codon_start=1 /transl_table=11 /product="ABC transporter permease" /protein_id="NP_459707.1" /db_xref="GI:16764092" /db_xref="GeneID:1252242" /translation="MNDLKEALARHQLWISLGWNDVLGRYRRSVLGPFWITISMGVTI SAMGPLYGSLFSSGSENFIMHLTLGMIFWAFLSATINESCGIFNESASIIKQSDLPLY LYILRVFYRQFMIMLHNFIIIPFVIFFTNTSVNLDILLFIPAIVITSISLISTGMILA IFCTRYRDMGPVVQSVVTLCFFITPIIWTSEQLPKGRKEFVDYNIFYYFMEMLRKPLM GTVPDVTIWFYTIITSIIMLMVSTLVLTKYRSRIVYWL" gene 788108..788823 /locus_tag="STM0723" /db_xref="GeneID:1252243" regulatory 788108..788113 /regulatory_class="ribosome_binding_site" /locus_tag="STM0723" /note="putative RBS for STM0723; RegulonDB:STMS1H001035" CDS 788113..788823 /locus_tag="STM0723" /note="similar to E. coli ATP-binding component of putrescine transport system (AAC73942.1); Blastp hit to AAC73942.1 (404 aa), 28% identity in aa 61 - 259" /codon_start=1 /transl_table=11 /product="sugar ABC transporter ATP-binding protein" /protein_id="NP_459708.1" /db_xref="GI:16764093" /db_xref="GeneID:1252243" /translation="MKISCKNVGVILPIFNSSHRSFKKTFLQAASGGRIGSSNTGIIE VEALKKIDFTLTEGNRLALIGHNGSGKTTLLRVLAGAYKPTSGKYECIGRVTSLIDPM MGMDGELTGLENIKLRGLFLGLSKNEIKNITEDVIEFSELGDFIKIPVRTYSSGMVLR LGFSISTAINPEILLMDEWMSVGDSDFKRKAEMRLNSFISKAGIMVMATHDDELAKSV CNKFIRLEHGEIVSKGGF" gene 788912..790695 /locus_tag="STM0724" /db_xref="GeneID:1252244" regulatory 788912..788917 /regulatory_class="ribosome_binding_site" /locus_tag="STM0724" /note="putative RBS for STM0724; RegulonDB:STMS1H001036" CDS 788917..790695 /locus_tag="STM0724" /codon_start=1 /transl_table=11 /product="glycosyl transferase" /protein_id="NP_459709.1" /db_xref="GI:16764094" /db_xref="GeneID:1252244" /translation="MYFLLQKVILPNIDLCTEEQLYFRTQGGKYNYTSRNLLVPRHKV AYFDTFFNAFSIKKWKKYTTLTSLFLRVNIIGRGTITVRHKENGVIRVLKQIDFKSSC NISDEIEIDISKINFGYIYVEWQSDEDSVLNGFELLTKDHVSKSSMALVITTYNRKEA VTKTINRINKTLLTQSEFKDRFKLIVVNNGEAINHPSGNGIIVINNENLGGSGGFMRG LIEAGKINDVKHVIFMDDDGSCEIESICRTHAFLLMAKDKNTVVTGCMLFEDNPAIIH ESGAIWHRDFLHYPDKHYLDAREIDSLDTFDNERKIGYGGWWFFAFNINAIEYYSFPF FVRGDDLLFGYMHKKHNIVTLNGVASWQMDFERKISVLNSYLNFRTVAVPALISKRKF AALLLSVFFVREVFLASFSCRYELARAMIMSYNDCLSGREFWEDNVDLLEIRKRINAI THNEKFNVEGIDIVNGCVDYPCSGKEKAIYKFFRCITLNGHLIPAFFLIKKPIVVDYR HYHPTKFSFRRITIYHLNIENGKLLKLTHSKMEFFKVIINGLFTAVKNFYRFKSAKKE MKNSLPYLTSKLFWYKKFNKKSEDKY" gene 790884..791721 /locus_tag="STM0725" /db_xref="GeneID:1252245" regulatory 790884..790889 /regulatory_class="ribosome_binding_site" /locus_tag="STM0725" /note="putative RBS for STM0725; RegulonDB:STMS1H001037" CDS 790888..791721 /locus_tag="STM0725" /codon_start=1 /transl_table=11 /product="glycosyl transferase" /protein_id="NP_459710.1" /db_xref="GI:16764095" /db_xref="GeneID:1252245" /translation="MEKSLLVIVRHKPGRTRLLMRALQSINDQTFKKINIIIFCMEEE LKCHNVDDFYLKELSNIYSVIYDESCIFNAIKMSESNYLCFMDDDDSWAPEYVSRLLS VLANIQSTYSSVNAIACHTNKVAEIAENNRIIINSTQPWNHYLNAGPVSFDVIYYRNS IPLSSCLFDKNSVIDMIESHKLSSPAFFWPFFIHYLAENDVWILPEALAFYHFRENDD FEFGNYTVINNELFDIECKIAENKMMRSIDDSSLLNVLLSNIANNSLFHKISYIENKI K" gene 791779..793674 /locus_tag="STM0726" /db_xref="GeneID:1252246" CDS 791779..793674 /locus_tag="STM0726" /codon_start=1 /transl_table=11 /product="putative glycosyl transferase" /protein_id="NP_459711.1" /db_xref="GI:16764096" /db_xref="GeneID:1252246" /translation="MVSRRIYRPRDLFSLMQSTLATEKFFISAYEIGIIDNFPEIRVQ AEVSARENRVRRFGGEPEILISEIYDEILKKHPQLSPATVKKIIDLEIQMEKIVLYKN ARGSCLFEKAISDGCKVILISDMYLPSAILKELLTSCGYDISNIPVYSSGEERYSKNS GKLFSIVKKNENVDIASWMHVGDNVHADILNAKKLGINTLHADWSEYNHGISNHWKAK DIIGESICKTLLLKQVSAFHQNDPLNEIGFKVFGPLLLGYVSWLANQLKIHKIDKALF LARDAHLIYKIYNEYFSEEHVKCEYLYISRASAYMVGMTDWPMHRIWHLFGGKNKKSI KKILAIAGLDASEHISDIHHVGFPDEEYIPVSGEEHKVHWLINKLFPYILLKNTQHRE VYADYFKTACEGYKNIALIDVGWMGNIQSVFARSLGAQWAEKQIHGFYLATFAGANDN RSIYNKMFGWLTNYGHPNDKCDLFLSGGVEIMEFAMADNTGSTIGYKKTDNGIIPVRE DSSGSEIEYLKKAARLQSGIISFFEYVKPLIQKGNYAALSSVVLSEPFFELIARPSSA QLDALSSLTHSESAGSNAERIVLAKKLPLKDKLFPGENYIKELNASYWKEGFKRINRK KFWAKYN" gene 793737..793879 /locus_tag="STM0727" /db_xref="GeneID:1252247" regulatory 793737..793742 /regulatory_class="ribosome_binding_site" /locus_tag="STM0727" /note="putative RBS for STM0727; RegulonDB:STMS1H001038" CDS 793742..793879 /locus_tag="STM0727" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459712.1" /db_xref="GI:16764097" /db_xref="GeneID:1252247" /translation="MPWRDHVNPDGEVVSCCDNVIITGYHRLFVHPLWMFIMVFDVHS R" gene 793916..794719 /gene="nei" /locus_tag="STM0728" /db_xref="GeneID:1252248" regulatory 793916..793921 /regulatory_class="ribosome_binding_site" /gene="nei" /locus_tag="STM0728" /note="putative RBS for nei; RegulonDB:STMS1H001039" CDS 793928..794719 /gene="nei" /locus_tag="STM0728" /EC_number="3.2.-.-" /note="removes oxidized pyrimidines; may also remove oxidized purines in absence of MutY and Fpg; similar to E. coli endonuclease VIII and DNA N-glycosylase with an AP lyase activity (AAC73808.1); Blastp hit to AAC73808.1 (263 aa), 88% identity in aa 1 - 262" /codon_start=1 /transl_table=11 /product="endonuclease VIII" /protein_id="NP_459713.1" /db_xref="GI:16764098" /db_xref="GeneID:1252248" /translation="MPEGPEIRRAADNLEAAIKGKPLTDVWFAFAQLKPYESQLTGQL VTRIETRGKALLTHFSNGLTLYSHNQLYGVWRVIDTGEIPQTTRILRVRLQTADKTIL LYSASDIEMLTAEQLTTHPFLQRVGPDVLDARLTPEEVKARLLSPRFRNRQFSGLLLD QSFLAGLGNYLRVEILWQVGLTGQHKAKDLNEAQLNALSHALLDIPRLSYTTRGQADE NKHHGALFRFKLFHRDGEACERCGGIIEKTTLSSRPFYWCPHCQK" gene complement(794774..795833) /gene="abrB" /locus_tag="STM0729" /db_xref="GeneID:1252249" CDS complement(794774..795820) /gene="abrB" /locus_tag="STM0729" /note="similar to E. coli putative transport protein (AAC73809.1); Blastp hit to AAC73809.1 (363 aa), 80% identity in aa 16 - 361" /codon_start=1 /transl_table=11 /product="AbrB family transcriptional regulator" /protein_id="NP_459714.1" /db_xref="GI:16764099" /db_xref="GeneID:1252249" /translation="MPILQWFLLFLLSLLISLIFLYLHLPAAMLLGPMIAGIVLSLRG STLQLPRGIFLAAQAILGCMIAQNLTGSILTTLALYWPVVLLVLLVTLLSSAVVGWLL VRYSSLPGNTGAWGSSPGGAAAMVAMAQDYGADIRLVAFMQYLRVLFVAGAAVLVTRL ILGDSAAAVSQQVIWFPPLSGNVLTTLLLAIVAGIAGRLMRIPSGTMLLPMLAGALLH SQGIIEIELPEWLLAVAYMAIGWRIGLGFDRQVFFMALRPLPQILLSIFALMAICAAM AWGMAYYMQIDFMTAYLATSPGGLDTVAAIAAGSSADMALIMAMQTLRLFSILLTGPA VARFISTYAPKQPL" regulatory complement(795828..795833) /regulatory_class="ribosome_binding_site" /gene="abrB" /locus_tag="STM0729" /note="putative RBS for abrB; RegulonDB:STMS1H001040" gene complement(795957..797303) /gene="gltA" /locus_tag="STM0730" /db_xref="GeneID:1252250" CDS complement(795957..797240) /gene="gltA" /locus_tag="STM0730" /EC_number="2.3.3.1" /note="citrate synthase. (SW:CISY_SALTY)" /codon_start=1 /transl_table=11 /product="citrate (Si)-synthase" /protein_id="NP_459715.1" /db_xref="GI:16764100" /db_xref="GeneID:1252250" /translation="MADTKAKITLTGDTTIELDVLKGTLGQDVIDIRSLGSKGVFTFD PGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLYGEKPTQEEYD EFRTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREI AAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCETYEVNPVLER AMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKML EEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKD DLLEVAMELEHIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGW IAHWNEMHTDGMKIARPRQLYTGYDKRDFKSALKR" gene 797200..797586 /locus_tag="STM0731" /db_xref="GeneID:1252251" CDS 797200..797586 /locus_tag="STM0731" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459716.1" /db_xref="GI:16764101" /db_xref="GeneID:1252251" /translation="MSPVRVIFAFVSAIYGLLSALLLKTAGTQTCLLHVIFLVVSAGK ILCMHQSTVTSLLFGSPLCERGDDLGTEQWALAGNDLINFELAANQERSNPSNVTCLS LITVLKEWVNIIVLLHNLLTGERVTP" regulatory complement(797248..797253) /regulatory_class="ribosome_binding_site" /gene="gltA" /locus_tag="STM0730" /note="putative RBS for gltA; RegulonDB:STMS1H001041" regulatory complement(797277..797285) /regulatory_class="minus_10_signal" /gene="gltA" /locus_tag="STM0730" /note="putative -10_signal for gltA; RegulonDB:STMLTH004696" regulatory complement(797295..797303) /regulatory_class="minus_35_signal" /gene="gltA" /locus_tag="STM0730" /note="putative -35_signal for gltA; RegulonDB:STMLTH004696" protein_bind complement(797603..797665) /note="putative binding site for ArcA, RegulonDB: STMS1H000023" /bound_moiety="ArcA" protein_bind complement(797605..797637) /note="putative binding site for IHF, RegulonDB: STMS1H000233" /bound_moiety="IHF" protein_bind complement(797635..797655) /note="putative binding site for CRP, RegulonDB: STMS1H000072" /bound_moiety="CRP" protein_bind 797684..797704 /note="putative binding site for CRP, RegulonDB: STMS1H000057" /bound_moiety="CRP" protein_bind 797725..797787 /note="putative binding site for ArcA, RegulonDB: STMS1H000021" /bound_moiety="ArcA" gene 797906..798384 /gene="sdhC" /locus_tag="STM0732" /db_xref="GeneID:1252252" regulatory 797906..797914 /regulatory_class="minus_35_signal" /gene="sdhC" /locus_tag="STM0732" /note="putative -35_signal for sdhC; RegulonDB:STMLTH004697" regulatory 797931..797939 /regulatory_class="minus_10_signal" /gene="sdhC" /locus_tag="STM0732" /note="putative -10_signal for sdhC; RegulonDB:STMLTH004697" regulatory 797982..797987 /regulatory_class="ribosome_binding_site" /gene="sdhC" /locus_tag="STM0732" /note="putative RBS for sdhC; RegulonDB:STMS1H001042" CDS 797995..798384 /gene="sdhC" /locus_tag="STM0732" /EC_number="1.3.5.1" /note="similar to E. coli succinate dehydrogenase, cytochrome b556 (AAC73815.1); Blastp hit to AAC73815.1 (129 aa), 92% identity in aa 1 - 129" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, cytochrome b556" /protein_id="NP_459717.1" /db_xref="GI:16764102" /db_xref="GeneID:1252252" /translation="MIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFIAVGIL LWLLGTSLSSPEGFQQAADIMDGFIVKFIMWGILTALAYHVIVGIRHMLMDFGYLEET FEAGQRSAKISFVITVVLSLLAGVLVW" gene 798365..798725 /gene="sdhD" /locus_tag="STM0733" /db_xref="GeneID:1252253" regulatory 798365..798370 /regulatory_class="ribosome_binding_site" /gene="sdhD" /locus_tag="STM0733" /note="putative RBS for sdhD; RegulonDB:STMS1H001043" CDS 798378..798725 /gene="sdhD" /locus_tag="STM0733" /EC_number="1.3.5.1" /note="similar to E. coli succinate dehydrogenase, hydrophobic subunit (AAC73816.1); Blastp hit to AAC73816.1 (115 aa), 94% identity in aa 1 - 115" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, hydrophobic membrane anchor protein" /protein_id="NP_459718.1" /db_xref="GI:16764103" /db_xref="GeneID:1252253" /translation="MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELT FEAWTGFFSSAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLAVRLILQLVIVVALV VYVIYGFVVVWGV" gene 798708..800491 /gene="sdhA" /locus_tag="STM0734" /db_xref="GeneID:1252254" regulatory 798708..798713 /regulatory_class="ribosome_binding_site" /gene="sdhD" /locus_tag="STM0733" /note="putative RBS for sdhA; RegulonDB:STMS1H001044" CDS 798725..800491 /gene="sdhA" /locus_tag="STM0734" /EC_number="1.3.5.1" /note="similar to E. coli succinate dehydrogenase, flavoprotein subunit (AAC73817.1); Blastp hit to AAC73817.1 (588 aa), 97% identity in aa 1 - 588" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase flavoprotein subunit" /protein_id="NP_459719.1" /db_xref="GI:16764104" /db_xref="GeneID:1252254" /translation="MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS HTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHM GLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTI FSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHIN TGDGVGMALRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERY APNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELS RTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEQGEDVVIPGLFAVGEIACV SVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGVLRDASESDVEGSLERLNRWNNN RNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNT QRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPERDDANWLCHTLYQPQTESM TRRSVNMEPKLRPAFPPKIRTY" gene 800494..801224 /gene="sdhB" /locus_tag="STM0735" /db_xref="GeneID:1252255" regulatory 800494..800499 /regulatory_class="ribosome_binding_site" /gene="sdhB" /locus_tag="STM0735" /note="putative RBS for sdhB; RegulonDB:STMS1H001045" CDS 800505..801224 /gene="sdhB" /locus_tag="STM0735" /EC_number="1.3.5.1" /note="similar to E. coli succinate dehydrogenase, iron sulfur protein (AAC73818.1); Blastp hit to AAC73818.1 (238 aa), 96% identity in aa 1 - 238" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, Fe-S protein" /protein_id="NP_459720.1" /db_xref="GI:16764105" /db_xref="GeneID:1252255" /translation="MMKLEFSIYRYNPDVDNAPRMQDYTLEGEEGRDMMLLDALIQLK EKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALTQPGKKIVIRPLPGLPVIR DLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSC PSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLEGMSDAFSVFRCHSIMNCVSVCP KGLNPTRAIGHIKSMLLQRSA" gene 801627..804549 /gene="sucA" /locus_tag="STM0736" /db_xref="GeneID:1252256" regulatory 801627..801635 /regulatory_class="minus_35_signal" /gene="sucA" /locus_tag="STM0736" /note="putative -35_signal for sucA; RegulonDB:STMLTH004698" regulatory 801654..801662 /regulatory_class="minus_10_signal" /gene="sucA" /locus_tag="STM0736" /note="putative -10_signal for sucA; RegulonDB:STMLTH004698" regulatory 801737..801742 /regulatory_class="ribosome_binding_site" /gene="sucA" /locus_tag="STM0736" /note="putative RBS for sucA; RegulonDB:STMS1H001046" CDS 801748..804549 /gene="sucA" /locus_tag="STM0736" /EC_number="1.2.4.2" /note="similar to E. coli 2-oxoglutarate dehydrogenase (decarboxylase component) (AAC73820.1); Blastp hit to AAC73820.1 (933 aa), 94% identity in aa 1 - 933" /codon_start=1 /transl_table=11 /product="2-oxoglutarate dehydrogenase E1 component" /protein_id="NP_459721.1" /db_xref="GI:16764106" /db_xref="GeneID:1252256" /translation="MQNSALKAWLDSSYLSGSNQSWIEQLYEDFLTDPDSVDANWRLT FQQLPGTGVKPDQLHSKTREYFRRQALAGSRHSSTISDPDTNVKQVKVLQLINAYRFR GHQHANLDPLGLWKQERVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLDAL KQTYCGPIGAEYMHITSTEEKRWIQQRIESGRAAFSADEKKRFLNELTAAEGLERYLG AKFPGAKRFSLEGGDALIPMLKEMVRHAGNSGTREVVLGMAHRGRLNVLINVLGKKPQ DLFDEFAGKHKEHLGTGDVKYHMGFSSDIETEGGLVHLALAFNPSHLEIVSPVVMGSV RARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQV GFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFI DLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEADKVATLEDATEMVNL YRDALDAGECVVKEWRPMNMHSFTWSPYLNHEWDEAYPNKVEMKRLQELAKRISTVPE AIEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFF HRHAVIHNQTNGSTYTPLQHIHSGQGQFKVWDSVLSEEAVLAFEYGYATAEPRTLTIW EAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQL CAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSTLDELANGS FQPAIGEIDELDPKAVKRVVMCSGKVYYDLLEQRRKNDQKDVAIVRIEQLYPFPHKAV QEALQPYAHVHDFVWCQEEPLNQGAWYCSQHHFREVTPFGAALRYAGRPASASPAVGY MSVHQKQQQDLVNDALNVD" gene 804553..805772 /gene="sucB" /locus_tag="STM0737" /db_xref="GeneID:1252257" regulatory 804553..804558 /regulatory_class="ribosome_binding_site" /gene="sucB" /locus_tag="STM0737" /note="putative RBS for sucB; RegulonDB:STMS1H001047" CDS 804564..805772 /gene="sucB" /locus_tag="STM0737" /EC_number="2.3.1.61" /note="similar to E. coli 2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component) (AAC73821.1); Blastp hit to AAC73821.1 (405 aa), 96% identity in aa 1 - 405" /codon_start=1 /transl_table=11 /product="dihydrolipoamide succinyltransferase" /protein_id="NP_459722.1" /db_xref="GI:16764107" /db_xref="GeneID:1252257" /translation="MSSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDK VVLEVPASADGILDAVLEEEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQ QASLEEQNNDALSPAIRRLLAEHNLEASAIKGTGVGGRLTREDVEKHLAKGESKAPAV EPAAQPALGARGEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYG EVFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGL VTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPI INPPQSAILGMHAIKDRPMAVDGKVEILPMMYLALSYDHRLIDGRESVGFLVTIKELL EDPTRLLLDV" gene 805897..807080 /gene="sucC" /locus_tag="STM0738" /db_xref="GeneID:1252258" regulatory 805897..805902 /regulatory_class="ribosome_binding_site" /gene="sucC" /locus_tag="STM0738" /note="putative RBS for sucC; RegulonDB:STMS1H001048" CDS 805914..807080 /gene="sucC" /locus_tag="STM0738" /EC_number="6.2.1.5" /note="similar to E. coli succinyl-CoA synthetase, beta subunit (AAC73822.1); Blastp hit to AAC73822.1 (388 aa), 98% identity in aa 1 - 388" /codon_start=1 /transl_table=11 /product="succinate--CoA ligase subunit beta" /protein_id="NP_459723.1" /db_xref="GI:16764108" /db_xref="GeneID:1252258" /translation="MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWV VKCQVHAGGRGKAGGVKVVKSKEEIRAFAENWLGKRLVTYQTDANGQPVNQILVEAAT DIGKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQG RELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGA DGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIV KLHGGEPANFLDVGGGATKERVTEAFKIILSDDNVKAVLVNIFGGIVRCDLIADGIIG AVEEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKSLTDAAQQVVAAVEGK" gene 807066..807949 /gene="sucD" /locus_tag="STM0739" /db_xref="GeneID:1252259" regulatory 807066..807071 /regulatory_class="ribosome_binding_site" /gene="sucD" /locus_tag="STM0739" /note="putative RBS for sucD; RegulonDB:STMS1H001049" CDS 807080..807949 /gene="sucD" /locus_tag="STM0739" /EC_number="6.2.1.5" /note="similar to E. coli succinyl-CoA synthetase, alpha subunit (AAC73823.1); Blastp hit to AAC73823.1 (289 aa), 95% identity in aa 1 - 289" /codon_start=1 /transl_table=11 /product="succinate--CoA ligase subunit alpha" /protein_id="NP_459724.1" /db_xref="GI:16764109" /db_xref="GeneID:1252259" /translation="MSVLINKDTKVICQGFTGSQGTFHSEQAIAYGTQMVGGVTPGKG GTTHLGLPVFNTVREAVEATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPT LDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIMPGHIHKPGKVGIVSRSGTLTYE AVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILKLFQEDPQTEAIVMIGEIGGSAEEEA AAYIKDHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRS LADIGEALKAIIK" protein_bind 809165..809187 /note="putative binding site for FNR, RegulonDB: STMS1H000169" /bound_moiety="FNR" protein_bind 809233..809257 /note="putative binding site for FNR, RegulonDB: STMS1H000159" /bound_moiety="FNR" gene 809352..811100 /gene="cydA" /locus_tag="STM0740" /db_xref="GeneID:1252260" regulatory 809352..809360 /regulatory_class="minus_35_signal" /gene="cydA" /locus_tag="STM0740" /note="putative -35_signal for cydA; RegulonDB:STMLTH004699" regulatory 809379..809387 /regulatory_class="minus_10_signal" /gene="cydA" /locus_tag="STM0740" /note="putative -10_signal for cydA; RegulonDB:STMLTH004699" protein_bind 809448..809459 /gene="cydA" /locus_tag="STM0740" /note="putative binding site for ArcA, RegulonDB: STMS1H000019" /bound_moiety="ArcA" regulatory 809521..809526 /regulatory_class="ribosome_binding_site" /gene="cydA" /locus_tag="STM0740" /note="putative RBS for cydA; RegulonDB:STMS1H001050" CDS 809532..811100 /gene="cydA" /locus_tag="STM0740" /EC_number="1.10.3.-" /EC_number="1.10.2.-" /note="similar to E. coli cytochrome d terminal oxidase, polypeptide subunit I (AAC73827.1); Blastp hit to AAC73827.1 (523 aa), 96% identity in aa 2 - 523" /codon_start=1 /transl_table=11 /product="cytochrome d terminal oxidase subunit 1" /protein_id="NP_459725.1" /db_xref="GI:16764110" /db_xref="GeneID:1252260" /translation="MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSG KQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLM AFFLESTFVGLFFFGWDRLSKVQHMCVTWLVALGSNLSALWILVANGWMQNPIAADFN FETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAYYMLKGRDFAFAKR SFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPASFTLFGIPD QDKQENHLAIQIPYALGIIATRSVDTPVIGLKDLMVQHEERIRNGMKAYELLEQLRAG STDQAVRDQFNSMKKDLGYGLLLKRYTPNVTDATEAQIQQATKDSIPRVAPLYFAFRI MVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQP WAIGEVLPTAVANSSLTVGDLLFSMFLICGLYTLFLVAELFLMFKFARLGPSSLKTGR YHFEQSTVTSQPAR" gene 811103..812255 /gene="cydB" /locus_tag="STM0741" /db_xref="GeneID:1252261" regulatory 811103..811108 /regulatory_class="ribosome_binding_site" /gene="cydB" /locus_tag="STM0741" /note="putative RBS for cydB; RegulonDB:STMS1H001051" CDS 811116..812255 /gene="cydB" /locus_tag="STM0741" /EC_number="1.10.3.-" /EC_number="1.10.2.-" /note="similar to E. coli cytochrome d terminal oxidase polypeptide subunit II (AAC73828.1); Blastp hit to AAC73828.1 (379 aa), 92% identity in aa 1 - 379" /codon_start=1 /transl_table=11 /product="cytochrome d ubiquinol oxidase subunit II" /protein_id="NP_459726.1" /db_xref="GI:16764111" /db_xref="GeneID:1252261" /translation="MIDYEVLRFIWWLLVGILLIGFAVTDGFDMGVGMLTRFLGRNDT ERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPV GFDYRSKIEDPRWRNMWDWGVFIGSFVPPLVIGVAFGNLLQGVPFHVDEYLRLYYTGN FFQLLNPFGLLAGIVSVGMIITQGATYLQMRTVGELHLRARATSQIAALVTLVCFALA GVWVMYGIDGYVVTSAIDHHAASNPLTKEVAREAGAWLVNFNNAPILWLVPALGVVLP LLTILTSRMEKGAWAFLFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQ MTLNLMTWVAAVFVPIILIYTSWCYWKMFGRITKEHIESNTHSLY" gene 812263..812383 /gene="ybgT" /locus_tag="STM0742" /db_xref="GeneID:1252262" regulatory 812263..812268 /regulatory_class="ribosome_binding_site" /gene="ybgT" /locus_tag="STM0742" /note="putative RBS for ybgT; RegulonDB:STMS1H001052" CDS 812270..812383 /gene="ybgT" /locus_tag="STM0742" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_459727.1" /db_xref="GI:16764112" /db_xref="GeneID:1252262" /translation="MWYFAWILGTLLACAFGIITALALEHVEAGKTGQEES" gene 812505..812801 /gene="ybgE" /locus_tag="STM0743" /db_xref="GeneID:1252263" regulatory 812505..812510 /regulatory_class="ribosome_binding_site" /gene="ybgE" /locus_tag="STM0743" /note="putative RBS for ybgE; RegulonDB:STMS1H001053" CDS 812520..812801 /gene="ybgE" /locus_tag="STM0743" /note="similar to E. coli orf, hypothetical protein (AAC73829.1); Blastp hit to AAC73829.1 (97 aa), 89% identity in aa 8 - 96" /codon_start=1 /transl_table=11 /product="cyd operon protein YbgE" /protein_id="NP_459728.1" /db_xref="GI:16764113" /db_xref="GeneID:1252263" /translation="MKYIYAVMDKRPLRALSFVMAIVLAGCMFWDPSRFAARTSTLEI WHGLLLMWAVCAGIIHGVGFRPESVHWQGIFCPLLADIVLIVGLIFFFL" gene 813018..813434 /gene="ybgC" /locus_tag="STM0744" /db_xref="GeneID:1252264" regulatory 813018..813023 /regulatory_class="ribosome_binding_site" /gene="ybgC" /locus_tag="STM0744" /note="putative RBS for ybgC; RegulonDB:STMS1H001054" CDS 813030..813434 /gene="ybgC" /locus_tag="STM0744" /note="similar to E. coli orf, hypothetical protein (AAC73830.1); Blastp hit to AAC73830.1 (134 aa), 92% identity in aa 1 - 134" /codon_start=1 /transl_table=11 /product="tol-pal system-associated acyl-CoA thioesterase" /protein_id="NP_459729.1" /db_xref="GI:16764114" /db_xref="GeneID:1252264" /translation="MNKYMFRWPIRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHH FSQQVLLAERVAFVVRKMTLEYYAPARLDDMLEVQTEITSMRGTALVFTQRIVNAENT LLNEAEVLIVCVDPLKMKPRALPKSIVAEFKQ" gene 813417..814123 /gene="tolQ" /locus_tag="STM0745" /db_xref="GeneID:1252265" regulatory 813417..813422 /regulatory_class="ribosome_binding_site" /gene="ybgC" /locus_tag="STM0744" /note="putative RBS for tolQ; RegulonDB:STMS1H001055" CDS 813431..814123 /gene="tolQ" /locus_tag="STM0745" /note="required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA to cytoplasm; similar to E. coli inner membrane protein, membrane-spanning, maintains integrity of cell envelope; tolerance to group A colicins (AAC73831.1); Blastp hit to AAC73831.1 (230 aa), 97% identity in aa 1 - 230" /codon_start=1 /transl_table=11 /product="tol protein, membrane-spanning inner membrane protein" /protein_id="NP_459730.1" /db_xref="GI:16764115" /db_xref="GeneID:1252265" /translation="MTDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNA AAREAEAFEDKFWSGIELSRLYQESQGRRDSLSGSEQIFYSGFKEFVRLHRANSHAPE AVVEGASRAMRISMNRELETLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVK QATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILH RQAFTVSESNKG" gene 814115..814555 /gene="tolR" /locus_tag="STM0746" /db_xref="GeneID:1252266" regulatory 814115..814120 /regulatory_class="ribosome_binding_site" /gene="tolR" /locus_tag="STM0746" /note="putative RBS for tolR; RegulonDB:STMS1H001056" CDS 814127..814555 /gene="tolR" /locus_tag="STM0746" /note="uptake of group A colicins (TonB independent), and translocation of phage DNA to cytoplasm; similar to E. coli putative inner membrane protein, involved in the tonB-independent uptake of group A colicins (AAC73832.1); Blastp hit to AAC73832.1 (142 aa), 85% identity in aa 1 - 142" /codon_start=1 /transl_table=11 /product="protein TolR" /protein_id="NP_459731.1" /db_xref="GI:16764116" /db_xref="GeneID:1252266" /translation="MARTRGRGRRELKSEINIVPLLDVLLVLLLIFMATAPIITQSVE VDLPEANQSQAVSSNDDPPVIIEVSGVGQYSVVVDKDRMDQLPSEQVIAEVKRHLQAN PKTVFLIGGAKEVPYDEIIKALNLLHSAGVKSVGLMTQPI" gene 814607..815843 /gene="tolA" /locus_tag="STM0747" /db_xref="GeneID:1252267" regulatory 814607..814612 /regulatory_class="ribosome_binding_site" /gene="tolA" /locus_tag="STM0747" /note="putative RBS for tolA; RegulonDB:STMS1H001057" CDS 814620..815843 /gene="tolA" /locus_tag="STM0747" /note="similar to E. coli membrane spanning protein, required for outer membrane integrity (AAC73833.1); Blastp hit to AAC73833.1 (421 aa), 70% identity in aa 1 - 420" /codon_start=1 /transl_table=11 /product="cell envelope integrity protein TolA" /protein_id="NP_459732.1" /db_xref="GI:16764117" /db_xref="GeneID:1252267" /translation="MSKATEQNDKLKRAIIISAVLHIILFAVLIWSSFDEHIEASAGG GGGSAIDAVMVDPGAVVQQYNRQQDQQASARRAEEERKKLQQQQAEELQQKQAAEQER LKQLEKERLAAQEQQKQAEEAAKLAQQQQQQAEEAAKAAADAKKKAEAEAAKAAADAK KKAEAEAVKAAADAKKKAEAEAAKAAADAKKKAEAEAAKAAAEAKKKAEAEAAKAAAE AKKKADAEAAKAAAEAKKKADAAAAKAAAEAKKKADAAAAKAAADAKKKAAAEKAAAA EGVDDLLGDLSSGKNAPKTGGGAKGNGQPSKDSGTSGANGGATGADISAYAKQIQVAI QSRLYDASLYQGKQCVLHISLAPDGSLKSITSEGGDPALCQAALMAAKTAKIPKPPSQ AVYEKIKDAKLDFKL" gene 815950..817259 /gene="tolB" /locus_tag="STM0748" /db_xref="GeneID:1252268" regulatory 815950..815955 /regulatory_class="ribosome_binding_site" /gene="tolB" /locus_tag="STM0748" /note="putative RBS for tolB; RegulonDB:STMS1H001058" CDS 815967..817259 /gene="tolB" /locus_tag="STM0748" /note="uptake of group A colicins, and translocation of phage DNA to cytoplasm, may be part of multiprotein peptidoglycan recycling complex (Two domains); similar to E. coli periplasmic protein involved in the tonb-independent uptake of group A colicins (AAC73834.1); Blastp hit to AAC73834.1 (430 aa), 95% identity in aa 1 - 430" /codon_start=1 /transl_table=11 /product="Tol-Pal system beta propeller repeat protein TolB" /protein_id="NP_459733.1" /db_xref="GI:16764118" /db_xref="GeneID:1252268" /translation="MKQALRVAFGFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKW AGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQQPATAQEVQPTAWSALGIDAVVVG QVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT FESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLA SGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQVYKMNINGGAAQRITWEGSQN QDADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYS SSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSPYL" gene 817280..817818 /gene="pal" /locus_tag="STM0749" /db_xref="GeneID:1252269" regulatory 817280..817285 /regulatory_class="ribosome_binding_site" /gene="pal" /locus_tag="STM0749" /note="putative RBS for pal; RegulonDB:STMS1H001059" CDS 817294..817818 /gene="pal" /locus_tag="STM0749" /note="uptake of group A colicins, and translocation of phage DNA to cytoplasm; similar to E. coli peptidoglycan-associated lipoprotein (AAC73835.1); Blastp hit to AAC73835.1 (173 aa), 97% identity in aa 1 - 173" /codon_start=1 /transl_table=11 /product="peptidoglycan-associated lipoprotein" /protein_id="NP_459734.1" /db_xref="GI:16764119" /db_xref="GeneID:1252269" /translation="MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGGMLNGAGTG MDANGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAAMLDAHANFLRSNPSY KVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHD EAAYAKNRRAVLVY" gene 817819..818616 /gene="ybgF" /locus_tag="STM0750" /db_xref="GeneID:1252270" regulatory 817819..817824 /regulatory_class="ribosome_binding_site" /gene="ybgF" /locus_tag="STM0750" /note="putative RBS for ybgF; RegulonDB:STMS1H001060" CDS 817828..818616 /gene="ybgF" /locus_tag="STM0750" /note="similar to E. coli orf, hypothetical protein (AAC73836.1); Blastp hit to AAC73836.1 (263 aa), 90% identity in aa 1 - 263" /codon_start=1 /transl_table=11 /product="cell division protein CpoB" /protein_id="NP_459735.1" /db_xref="GI:16764120" /db_xref="GeneID:1252270" /translation="MSSNFRHHLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQ LERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVMERQKQIMLQLGSLN NGGAAQPAAGDQSGAATTATPAPDAGTATSGAPVQSGDANTDYNAAIALVQDKSRQDD AIVAFQNFIKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA MYKVGVIMQDKGDTAKAKAVYQQVINKYPGTDGAKQAQKRLNAM" protein_bind 818659..818677 /note="putative binding site for FIS, RegulonDB: STMS1H000149" /bound_moiety="FIS" gene 818778..818850 /gene="lysT" /locus_tag="STM0751" /db_xref="GeneID:1252271" tRNA 818778..818850 /gene="lysT" /locus_tag="STM0751" /product="tRNA-Lys" /db_xref="GeneID:1252271" gene 818985..819057 /gene="valT" /locus_tag="STM0752" /db_xref="GeneID:1252272" tRNA 818985..819057 /gene="valT" /locus_tag="STM0752" /product="tRNA-Val" /db_xref="GeneID:1252272" gene 819064..819136 /gene="lysW" /locus_tag="STM0753" /db_xref="GeneID:1252273" tRNA 819064..819136 /gene="lysW" /locus_tag="STM0753" /product="tRNA-Lys" /db_xref="GeneID:1252273" gene 819189..819261 /gene="lysY" /locus_tag="STM0754" /db_xref="GeneID:1252274" tRNA 819189..819261 /gene="lysY" /locus_tag="STM0754" /product="tRNA-Lys" /db_xref="GeneID:1252274" gene 819399..819471 /gene="lysZ" /locus_tag="STM0755" /db_xref="GeneID:1252275" tRNA 819399..819471 /gene="lysZ" /locus_tag="STM0755" /product="tRNA-Lys" /db_xref="GeneID:1252275" gene 820225..821279 /gene="nadA" /locus_tag="STM0756" /db_xref="GeneID:1252276" regulatory 820225..820230 /regulatory_class="ribosome_binding_site" /gene="nadA" /locus_tag="STM0756" /note="putative RBS for nadA; RegulonDB:STMS1H001062" CDS 820236..821279 /gene="nadA" /locus_tag="STM0756" /note="quinolinate synthetase A. (SW:NADA_SALTY)" /codon_start=1 /transl_table=11 /product="quinolinate synthase" /protein_id="NP_459736.1" /db_xref="GI:16764121" /db_xref="GeneID:1252276" /translation="MSVMFDPQAAIYPFPPKPTPLNDDEKQFYREKIKRLLKERNAVM VAHYYTDPEIQQLAEETGGCISDSLEMARFGTKHAASTLLVAGVRFMGETAKILSPEK TILMPTLAAECSLDLGCPIDEFSAFCDAHPDRTVVVYANTSAAVKARADWVVTSSIAV ELIEHLDSLGEKIIWAPDRHLGNYVQKQTGADVLCWQGACIVHDEFKTQALTRLKKIY PDAALLVHPESPQSIVEMADAVGSTSQLIKAAKTLPHRQLIVATDRGIFYKMQQAVPE KELLEAPTAGEGATCRSCAHCPWMAMNGLKAIAEGLEQGGAAHEIQVDAALREGALLP LNRMLDFAATLRA" gene 821292..822023 /gene="pnuC" /locus_tag="STM0757" /db_xref="GeneID:1252277" regulatory 821292..821297 /regulatory_class="ribosome_binding_site" /gene="pnuC" /locus_tag="STM0757" /note="putative RBS for pnuC; RegulonDB:STMS1H001063" CDS 821304..822023 /gene="pnuC" /locus_tag="STM0757" /note="PNUC protein. (SW:PNUC_SALTY)" /codon_start=1 /transl_table=11 /product="nicotinamide riboside transporter PnuC" /protein_id="NP_459737.1" /db_xref="GI:16764122" /db_xref="GeneID:1252277" /translation="MDFFSTHNILIHIPIGAGGYDLSWIEAVGTIAGLLCIWLASLEK ISNYFFGLVNVTLFAIIFFQIQLYASLLLQLFFFAANIYGWYAWSRQTKDNQAELKIR WLPLPKAMAWLAICVIAIGLMTRYIDPVFAVLTRVAVAIMQMLGLQVTMPVLQPDAFP FWDSCMMVLSIVAMILMTRKYVENWLLWVIINVISVVIFALQGVYAMSLEYLILTFIA VNGSRLWINSARERGSRALSR" gene complement(822020..822971) /gene="ybgR" /locus_tag="STM0758" /db_xref="GeneID:1252278" CDS complement(822020..822958) /gene="ybgR" /locus_tag="STM0758" /note="similar to E. coli putative transport system permease protein (AAC73839.1); Blastp hit to AAC73839.1 (313 aa), 85% identity in aa 1 - 312" /codon_start=1 /transl_table=11 /product="cation transporter" /protein_id="NP_459738.1" /db_xref="GI:16764123" /db_xref="GeneID:1252278" /translation="MAHSHSHADSHLPKDNNARRLLFAFIVTAGFMLLEVVGGILSGS LALLADAGHMLTDAAALLFALLAVQFSRRPPTVRHTFGWLRLTTLAAFVNAIALVVIT LLIVWEAIERFYTPRPVAGNLMMVIAVAGLLANLFAFWILHRGSDEKNLNVRAAALHV MGDLLGSVGAIVAALIIIWTGWTPADPILSILVSVLVLRSAWRLLKDSVNELLEGAPV SLDINALQRHLSREIPEVRNVHHVHVWMVGEKPVMTLHAQVIPPHDHDALLERIQDFL MHEYHIAHATIQMEYQVCHGPDCHLNQTSSGHVHHH" regulatory complement(822966..822971) /regulatory_class="ribosome_binding_site" /gene="ybgR" /locus_tag="STM0758" /note="putative RBS for ybgR; RegulonDB:STMS1H001064" gene complement(823069..823467) /gene="ybgS" /locus_tag="STM0759" /db_xref="GeneID:1252279" CDS complement(823069..823455) /gene="ybgS" /locus_tag="STM0759" /note="similar to E. coli putative homeobox protein (AAC73840.1); Blastp hit to AAC73840.1 (126 aa), 78% identity in aa 1 - 126" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459739.1" /db_xref="GI:16764124" /db_xref="GeneID:1252279" /translation="MKMTKLTTLLLTATLGLASGAALAAESNAQSSNGQANSAANAGQ VAPDARQNVAPNDVNNNDINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRC PDINKKVETGNGVNNDVNTKTDGTTQ" regulatory complement(823462..823467) /regulatory_class="ribosome_binding_site" /gene="ybgS" /locus_tag="STM0759" /note="putative RBS for ybgS; RegulonDB:STMS1H001065" gene 823653..824827 /gene="aroG" /locus_tag="STM0760" /db_xref="GeneID:1252280" regulatory 823653..823661 /regulatory_class="minus_35_signal" /gene="aroG" /locus_tag="STM0760" /note="putative -35_signal for aroG; RegulonDB:STMLTH004701" regulatory 823680..823688 /regulatory_class="minus_10_signal" /gene="aroG" /locus_tag="STM0760" /note="putative -10_signal for aroG; RegulonDB:STMLTH004701" protein_bind 823685..823709 /gene="aroG" /locus_tag="STM0760" /note="putative binding site for TyrR, RegulonDB: STMS1H000392" /bound_moiety="TyrR" regulatory 823764..823769 /regulatory_class="ribosome_binding_site" /gene="aroG" /locus_tag="STM0760" /note="putative RBS for aroG; RegulonDB:STMS1H001066" CDS 823775..824827 /gene="aroG" /locus_tag="STM0760" /EC_number="2.5.1.54" /note="similar to E. coli 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, phenylalanine repressible) (AAC73841.1); Blastp hit to AAC73841.1 (350 aa), 94% identity in aa 1 - 350" /codon_start=1 /transl_table=11 /product="3-deoxy-7-phosphoheptulonate synthase" /protein_id="NP_459740.1" /db_xref="GI:16764125" /db_xref="GeneID:1252280" /translation="MNYQNDDLRIKEINELLPPVALLEKFPATENAANTVAHARKAIH KILKGNDDRLLVVIGPCSIHDPAAAKEYAARLLALRDELQGELEIVMRVYFEKPRTTV GWKGLINDPHMDNSFQINDGLRIARKLLLDINDSGLPAAGEFLDMITPQYLADLMSWG AIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHS AIVNTSGNGDCHIILRGGKAPNYSAQHVAEVKEGLTKAGLTPQVMIDFSHANSCKQFQ KQMEVCADVCQQIAGGEKAIIGVMVESHLVEGNQSLESGQPLTYGKSITDACIGWEDT DALLRQLSAAVKARRG" gene complement(824921..825473) /locus_tag="STM0761" /db_xref="GeneID:1252281" CDS complement(824921..825466) /locus_tag="STM0761" /EC_number="4.2.1.2" /EC_number="2.5.1.54" /note="similar to E. coli fumarase B= fumarate hydratase Class I; anaerobic isozyme (AAC77083.1); Blastp hit to AAC77083.1 (548 aa), 36% identity in aa 361 - 541" /codon_start=1 /transl_table=11 /product="fumarate hydratase Class I anaerobic" /protein_id="NP_459741.1" /db_xref="GI:16764126" /db_xref="GeneID:1252281" /translation="MMELTLPLTKEKAKTLKVGDILFLTGFAYTCRDAAHKKIEVALS NGEKSPVDFQNQTIYYAGPCPARPGLPIGSNGPTTAARMDPFVEMMFQQGATAFLGKG DRADYVAELCKKYGGVSLLGIGGASAINTKHVKSVEIVAYEELGTESIKKLYFDRYRV IVGIDSEGNTLQKQEVPKYAK" regulatory complement(825468..825473) /regulatory_class="ribosome_binding_site" /locus_tag="STM0761" /note="putative RBS for STM0761; RegulonDB:STMS1H001067" gene complement(825481..826333) /locus_tag="STM0762" /db_xref="GeneID:1252282" CDS complement(825481..826326) /locus_tag="STM0762" /EC_number="4.2.1.2" /EC_number="2.5.1.54" /note="similar to E. coli L-tartrate dehydratase, subunit A (AAC76097.1); Blastp hit to AAC76097.1 (303 aa), 29% identity in aa 29 - 287" /codon_start=1 /transl_table=11 /product="fumarate hydratase" /protein_id="NP_459742.1" /db_xref="GI:16764127" /db_xref="GeneID:1252282" /translation="MSRILNTEIIIPIIEKLVKKACYELDDNLMCSFRKAYDKEESKI GKETIKILIDNGEYAKKEQLACCHDTGTCIVIMEIGQHVCWEGKPLKDQVNQGVRQGY ENGYLRKSMVADPLERINTNDNTPAILHTEIVDGDRVTITVMPKGGGSENMGTFKTLL PGDGIDGIKDFVLETVRRVGGNPCPPYIIGIGVGGTMDHCSWMAKKALLRPLGEFNAK PLYAQLEAELLEAVNNTGIGPLGMGGRITALGVHVDYYPCHITALPVAINFQCNASRH ASEII" regulatory complement(826328..826333) /regulatory_class="ribosome_binding_site" /locus_tag="STM0762" /note="putative RBS for STM0762; RegulonDB:STMS1H001068" gene 826495..827346 /locus_tag="STM0763" /db_xref="GeneID:1252283" CDS 826495..827346 /locus_tag="STM0763" /note="similar to E. coli cyn operon positive regulator (AAC73441.1); Blastp hit to AAC73441.1 (299 aa), 25% identity in aa 16 - 288" /codon_start=1 /transl_table=11 /product="transcriptional regulator, lysR family" /protein_id="NP_459743.3" /db_xref="GI:1109557596" /db_xref="GeneID:1252283" /translation="MLGNLTRVAERHFVSQPNITIAIKKLETELGVTLFDRKKNKLVL TEEGMFFLQKIEPILIALKNSVAEMKDYRNENGGIVTLGIPPMISLFLFSPLFKHFRE IYPEMELSLVEEGTFGLHDKLSAGELDLAIVIINDCPKELVTVPLMTQQHVVCMSDKH PLAKKDSIDWEDLQYEPLILMKKDSWHRKTIIEECTKRGIHTHIFLSSNRVQTNIDLV AKNEGISFILDAVDLKAEKVITKAMTEPTYVTIGLAWKKDKYLSYATRALIKFIEDYI KEHFTIK" gene complement(827347..828330) /locus_tag="STM0764" /db_xref="GeneID:1252284" CDS complement(827347..828330) /locus_tag="STM0764" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC77283.1); Blastp hit to AAC77283.1 (303 aa), 30% identity in aa 9 - 300" /codon_start=1 /transl_table=11 /product="transcriptional regulator, lysR family" /protein_id="NP_459744.1" /db_xref="GI:16764129" /db_xref="GeneID:1252284" /translation="MYNATYINETHPMLIRLQLMQYRHHLELTWLEDCLALKETLNFS KASASRYVTQPAFSRRIQSLEEWVGTPLFERSKRGVTLTKAGEVFTDQLPELIHSLYT LKSDTLEAAGNKQPSLVFSATHALSFSFVPHLLKQSDKIAKFGSFRLLSDSLNACEKM MRQGDSQFLLCHHHPHMHLNLNKNNFMSIRLGFDTLIPFSKPDSETLKPLWNINNKIQ FPYLSFSSQSGLGRIIANTASINRITHNINVAFVADLAATLLAMVRSGDGVAWIPQSL ARQDIEAKTIVTAAEKESNLWVPIEIRLYRPAKRMPPDAEELWEIFVEEQI" gene 828574..829821 /locus_tag="STM0765" /db_xref="GeneID:1252285" CDS 828574..829821 /locus_tag="STM0765" /note="similar to E. coli putative transport protein (AAC75352.1); Blastp hit to AAC75352.1 (610 aa), 31% identity in aa 9 - 193, 27% identity in aa 413 - 610, 27% identity in aa 425 - 594, 24% identity in aa 6 - 196" /codon_start=1 /transl_table=11 /product="putative cation transporter" /protein_id="NP_459745.1" /db_xref="GI:16764130" /db_xref="GeneID:1252285" /translation="MLVLVVAIIIFVSDRLPMGLVAFMVPMALYFTGVIDAKDIFASI VNANVILIVAMCVLGAAFFKTGLAWQSSKILLKYAKTERSLSVLIFLIGGVMSAFVSN SGTVAVLIPIVLGIAASSQIKPIKLLMPLVFGATIGADISIIGSPGNLIAKNTIETFS KGSLSVPFFEYAKIGIPLLIACSIFLYFFGSKLIADRDGNTQSDSQMDYSQIPAWHRN LTLAVFILSIAGMVATDYIKFLPPMHIIACCAAIVLVFAGVLTQKETFNSFETLTVFM LAFMMPLGAALNSTGAGEMIANAVISVTGDSGVMIIMASLWILTWALTQVMSNTAACT LLCPVGWTIAQSIGADPRAVVIAVFIASSVAVCTPMAITANSMIIGPGNVKFKDFLKP GLAISLVCFIVSMILLPIFYPFY" gene 829871..830116 /gene="dcoC" /locus_tag="STM0766" /db_xref="GeneID:1252286" CDS 829871..830116 /gene="dcoC" /locus_tag="STM0766" /EC_number="4.1.1.3" /EC_number="2.5.1.54" /note="sodium ion pump oxaloacetate decarboxylase subunit gamma (gi|321934)" /codon_start=1 /transl_table=11 /product="oxaloacetate decarboxylase subunit gamma" /protein_id="NP_459746.1" /db_xref="GI:16764131" /db_xref="GeneID:1252286" /translation="MNSSVLLGEGFTLMFLGMGFVLAFLFLLIFAIRGMSAAVNRFFP EPVPVPKAAPAAAPADDFARLKPVIAAAIHHHRRLNP" gene 830132..831906 /gene="dcoA" /locus_tag="STM0767" /note="pseudogene; frameshift relative to Klebsiella pneumoniae oxaloacetate decarboxylase alpha chain (OADA) (SW:P13187)" /pseudo /db_xref="GeneID:1252287" gene 831914..833223 /gene="dcoB" /locus_tag="STM0768" /db_xref="GeneID:1252288" regulatory 831914..831919 /regulatory_class="ribosome_binding_site" /gene="dcoB" /locus_tag="STM0768" /note="putative RBS for dcoB; RegulonDB:STMS1H001070" CDS 831922..833223 /gene="dcoB" /locus_tag="STM0768" /EC_number="4.1.1.3" /EC_number="2.5.1.54" /note="oxaloacetate decarboxylase beta chain. (SW:DCOB_SALTY)" /codon_start=1 /transl_table=11 /product="oxaloacetate decarboxylase subunit beta" /protein_id="NP_459747.1" /db_xref="GI:16764132" /db_xref="GeneID:1252288" /translation="MESLNALLQGMGLMHLGAGQAIMLLVSLLLLWLAIAKKFEPLLL LPIGFGGLLSNIPEAGLALTALESLLAHHDAGQLAVIAAKLHCAPDVHAIKEALALAL PSVQNQMENLAVDMGYTPGVLALFYKVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTL LLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLAPEL LGAIAVAAYSYMALVPLIQPPIMKALTTETERKIRMVQLRTVSKREKILFPVVLLLLV ALLLPDAAPLLGMFCFGNLMRESGVVERLSDTVQNGLINIVTIFLGLSVGAKLVADKF LQPQTLGILLLGVIAFGIGTAAGVLMAKLLNLCSKNKINPLIGSAGVSAVPMAARVSN KVGLESDPQNFLLMHAMGPNVAGVIGSAIAAGVMLKYVLAM" gene 833335..834040 /locus_tag="STM0769" /db_xref="GeneID:1252289" regulatory 833335..833340 /regulatory_class="ribosome_binding_site" /locus_tag="STM0769" /note="putative RBS for STM0769; RegulonDB:STMS1H001071" CDS 833342..834040 /locus_tag="STM0769" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459748.1" /db_xref="GI:16764133" /db_xref="GeneID:1252289" /translation="MNETIAFRPEGRASIKDVVVNYTLASLDELEQLHPALNLLAHPS IVRGSHDFFVRCYDAGVQHAQAGAAETVAVLPDSLPQERQRSGLLCAAAGRLDALRQP LTHNRLCDLASQFCAGMADVDSETRSGFYTVRSISLPVYRRLLRDQHSHGVCLQQALL HLLAWKSDSPWARQQAQRLLWQGGVLGDKGEFALMTLDDELRERQIGWPGLWSLLAVT GFLAKFPAGPIFAD" gene 834420..835499 /locus_tag="STM0770" /db_xref="GeneID:1252290" CDS 834420..835499 /locus_tag="STM0770" /note="similar to E. coli ferric enterobactin (enterochelin) transport (AAC73691.1); Blastp hit to AAC73691.1 (334 aa), 37% identity in aa 9 - 332" /codon_start=1 /transl_table=11 /product="iron ABC transporter permease" /protein_id="NP_459749.1" /db_xref="GI:16764134" /db_xref="GeneID:1252290" /translation="MTCQDKSLLAPALASTPVIPRYRQIIRKRAVLMLAIALAMMASL MVDVTCGSSGLPLSALWQALFQPEKVNAGIHVIVWDIRLPYALMALLVGMALGLAGAE MQTILNNPLATPFTLGVSSAAAFGAALAIVLGIGIPGIPAAWFIPANAFIFALLSALL LDGITRWTGVAASGVVLFGIALVFTFNALVAIMQFVADEDTLQGLVFWTMGSLVRASW EKLGVLAVVFIAVLFCALRSAWQLTALRLGEERAMSFGIHVRRLRLLSLLRISLLSAL AVAFVGPIGFIGLVAPHIARILLGEDHRFYLPGSVLIGGLVLSLASIAAKNSIPGVMV PVGIVTSLVGVPFFLSIVLRHRGSL" gene 835495..836275 /locus_tag="STM0771" /db_xref="GeneID:1252291" regulatory 835495..835500 /regulatory_class="ribosome_binding_site" /locus_tag="STM0771" /note="putative RBS for STM0771; RegulonDB:STMS1H001072" CDS 835499..836275 /locus_tag="STM0771" /note="similar to E. coli ATP-binding component of ferric enterobactin transport (AAC73689.1); Blastp hit to AAC73689.1 (271 aa), 34% identity in aa 8 - 244" /codon_start=1 /transl_table=11 /product="iron ABC transporter" /protein_id="NP_459750.1" /db_xref="GI:16764135" /db_xref="GeneID:1252291" /translation="MRGLMLRSFSAGYSTQPVIADLNVPLLPRGKITILLGPNGCGKS TLLRSLAGLNNADGEALLDGEDLMSLSFAERAQKVVFLPQSLPQGVHLHVLESIIVVL RASGGRDNAQGRAQILAILEQLGITHLALQYLDQLSGGQRQLVGLAQSLIRRPELLLL DEPLSALDLNYQFHVMDLVRRDTQAQNRVTIVVAHDINIALRHGDHVLMLKDGRLVAS GAPETVITAERLAEVYRVRGRVERCSQGKLQVVLDGVIAV" gene complement(836366..837131) /gene="gpmA" /locus_tag="STM0772" /db_xref="GeneID:1252292" CDS complement(836366..837118) /gene="gpmA" /locus_tag="STM0772" /note="similar to E. coli phosphoglyceromutase 1 (AAC73842.1); Blastp hit to AAC73842.1 (250 aa), 98% identity in aa 1 - 250" /codon_start=1 /transl_table=11 /product="phosphoglyceromutase" /protein_id="NP_459751.1" /db_xref="GI:16764136" /db_xref="GeneID:1252292" /translation="MAVTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKL LKEEGFSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAE TAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDR VIPYWNDTILPRMKSGERVIIAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEF DENFKPLKHYYLGNADEIAAKAAAVANQGKAK" regulatory complement(837126..837131) /regulatory_class="ribosome_binding_site" /gene="gpmA" /locus_tag="STM0772" /note="putative RBS for gpmA; RegulonDB:STMS1H001073" gene complement(837342..838395) /gene="galM" /locus_tag="STM0773" /db_xref="GeneID:1252293" CDS complement(837342..838382) /gene="galM" /locus_tag="STM0773" /EC_number="5.1.3.3" /note="similar to E. coli galactose-1-epimerase (mutarotase) (AAC73843.1); Blastp hit to AAC73843.1 (346 aa), 88% identity in aa 1 - 344" /codon_start=1 /transl_table=11 /product="galactose-1-epimerase" /protein_id="NP_459752.1" /db_xref="GI:16764137" /db_xref="GeneID:1252293" /translation="MLNETPALAPDGQPYRLLTLRNSAGMVVTLMDWGATLLSARIPL SDGSVREALLGCASPEHYPEQTSFLGASIGRYANRIANSRYTFAGETVQLSPSQGENQ LHGGPEGFDKRRWQIVNQNDRQVLFALTSDDGDQGFPGHLCATAQYRLTDDNRISITY RATVDKPCPVNLTNHVYFNLDGDRTDVRQHKLQILADEYLPVDESGIPRQGLKSVANT SFDFRMPKVIASEFLADDDQRKVKGYDHAFLLQTQGDGKKPAARLWSQDGKLQMMVYT TAPALQFYSGNYLAGTPSRGPEPYADWQGLALESELLPDSPNHPEWPQPDCILRPGEE YASLTEYQFIPF" gene complement(838376..839537) /gene="galK" /locus_tag="STM0774" /db_xref="GeneID:1252294" CDS complement(838376..839524) /gene="galK" /locus_tag="STM0774" /EC_number="2.7.1.6" /note="galactokinase. (SW:GAL1_SALTY)" /codon_start=1 /transl_table=11 /product="galactokinase" /protein_id="NP_459753.1" /db_xref="GI:16764138" /db_xref="GeneID:1252294" /translation="MNLKEKTRALFAEIFGYPATHTIQAPGRVNLIGEHTDYNDGFVL PCAIDYQTVISCAPRDDRTVRVIAADYDNQVDEFSLDAPIVTHDSQQWSNYVRGVVKH LQQRNNAFGGVDMVISGNVPQGAGLSSSASLEVAVGTVFQQLYHLPLDGAQIALNGQE AENQFVGCNCGIMDQLISALGKKDHALLIDCRTLGAKAVSMPKGVAVVIINSNFKRTL VGSEYNTRREQCETGARFFQQPALRDVSLEAFNAVASELDPVVAKRVRHVLSENARTV EAASALEKGDLQRMGQLMAESHASMRDDFEITVPQIDTLVDIVKATIGDRGGVRMTGG GFGGCVVALIPEDLVPAVRQAVAQQYEAKTGIKETFYVCKPSQGAGQC" regulatory complement(838390..838395) /regulatory_class="ribosome_binding_site" /gene="galM" /locus_tag="STM0773" /note="putative RBS for galM; RegulonDB:STMS1H001074" gene complement(839527..840585) /gene="galT" /locus_tag="STM0775" /db_xref="GeneID:1252295" CDS complement(839527..840573) /gene="galT" /locus_tag="STM0775" /EC_number="2.7.7.10" /EC_number="2.7.7.12" /note="galactose-1-phosphate uridylyltransferase. (SW:GAL7_SALTY)" /codon_start=1 /transl_table=11 /product="galactose-1-phosphate uridylyltransferase" /protein_id="NP_459754.1" /db_xref="GI:16764139" /db_xref="GeneID:1252295" /translation="MTPFNPIDHPHRRYNPLTGQWVLVSPHRAKRPWQGAQETPSQQM LPAHDPDCFLCAGNTRVTGDKNPDYKGTYVFTNDFAALMADTPDAPDSHDPLMRCQSA RGTSRVICFSPDHSKTLPELSLPALTEIVRTWQTQTAELGKTYPWVQVFENKGAAMGC SNPHPHGQVWANSFLPNEAEREDRLQKAYFAEQRSPMLVDYVQRELADGSRTVVETEH WLAVVPYWAAWPFETLLLPKTHVLRITDLSDEQRDSLALALKKLTSRYDNLFQCSFPY SMGWHGAPFNGEENAHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAER LRAVSDIHFRESGV" regulatory complement(839532..839537) /regulatory_class="ribosome_binding_site" /gene="galT" /locus_tag="STM0775" /note="putative RBS for galK; RegulonDB:STMS1H001075" regulatory complement(840580..840585) /regulatory_class="ribosome_binding_site" /gene="galT" /locus_tag="STM0775" /note="putative RBS for galT; RegulonDB:STMS1H001076" gene complement(840584..841667) /gene="galE" /locus_tag="STM0776" /db_xref="GeneID:1252296" CDS complement(840584..841600) /gene="galE" /locus_tag="STM0776" /EC_number="5.1.3.2" /note="UDP-glucose 4-epimerase. (SW:GALE_SALTY)" /codon_start=1 /transl_table=11 /product="UDP-glucose 4-epimerase" /protein_id="NP_459755.1" /db_xref="GI:16764140" /db_xref="GeneID:1252296" /translation="MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVI ERLGGKHPTFVEGDIRNEALITEILHDHAIDTVIHFAGLKAVGESVARPLEYYDNNVN GTLRLVSAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL TDLQKAQPEWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRESLAVF GNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLADKSGVHIYNLGAGVGSSVLDVVNAF SKACGKPINYHFAPRRDGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQ GYPD" protein_bind complement(841585..841603) /gene="galE" /locus_tag="STM0776" /note="putative binding site for GalR, RegulonDB: STMS1H000195" /bound_moiety="GalR" regulatory complement(841607..841612) /regulatory_class="ribosome_binding_site" /gene="galE" /locus_tag="STM0776" /note="putative RBS for galE; RegulonDB:STMS1H001077" regulatory complement(841640..841648) /regulatory_class="minus_10_signal" /gene="galE" /locus_tag="STM0776" /note="putative -10_signal for galE; RegulonDB:STMLTH004702" protein_bind complement(841655..841675) /note="putative binding site for CRP, RegulonDB: STMS1H000085" /bound_moiety="CRP" regulatory complement(841659..841667) /regulatory_class="minus_35_signal" /gene="galE" /locus_tag="STM0776" /note="putative -35_signal for galE; RegulonDB:STMLTH004702" protein_bind complement(841759..841777) /note="putative binding site for GalR, RegulonDB: STMS1H000194" /bound_moiety="GalR" gene complement(841823..842736) /locus_tag="STM0777" /db_xref="GeneID:1252297" CDS complement(841823..842731) /locus_tag="STM0777" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459756.1" /db_xref="GI:16764141" /db_xref="GeneID:1252297" /translation="MAFRFPQIILFLLAAILFCPSSYAEQKPTAAQEARKTAVEVAVE DMSRAAVAGPTKISLGDKATLNLPEGFTWIPAKEAAVFMREIGNYVDDEYFYGLVFKK EMNGFISIEYDDSGYVKDDDAKNWDADELMDNLRKGTKEANKDRIAKGIEPIEIIGWI EKPTYDATNHRLIWSAAIQDIGTNEPLNEQGVNYNTYLLGREGYFSLNLVTDRGSVDH EIPLAKRILSSVKFNAGQRYADFNESTDKIAEYGLAALIGGIAAKKVGLLAMLGIALL KFWKVTAIGVVAVGALARKLLSRKKD" regulatory complement(842731..842736) /regulatory_class="ribosome_binding_site" /locus_tag="STM0777" /note="putative RBS for STM0777; RegulonDB:STMS1H001078" gene complement(842902..844389) /gene="modF" /locus_tag="STM0778" /db_xref="GeneID:1252298" CDS complement(842902..844377) /gene="modF" /locus_tag="STM0778" /note="similar to E. coli ATP-binding component of molybdate transport system (AAC73847.1); Blastp hit to AAC73847.1 (490 aa), 31% identity in aa 1 - 211" /codon_start=1 /transl_table=11 /product="molybdate ABC transporter ATP-binding protein ModF" /protein_id="NP_459757.1" /db_xref="GI:16764142" /db_xref="GeneID:1252298" /translation="MSSLQISQGTFRLSDTKTLHLDSLTLNAGDSWAFVGANGSGKSA LARALAGELPLLTGERQCRFTRITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTT AEIIQDDVHHPARCAILAQQFGISALLDRRFKYLSTGETRKALLCQALMSEPELLILD EPFDGLDVTARQQLAQRLTALNQAGMTLALVLNRFDEIPDFVQFAGVLADCTLAETGT TAELLQRALVAQLAHSERLTDVQLPEPDEPSARHALPDGEPRIVLNDGVVSYNDRPIL HHLSWRVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDI KKHIGYVSSSLHLDYRVSTTVRNVILSGYFDSIGIYQAVSDRQRKLAQQWLDILGIDK RTADAPFHSLSWGQQRLALIVRALVKHPTVLILDEPLQGLDPLNRQLVRRFVDVLIRQ GETQLLFVSHHAEDAPACITHRLEFVPEGERYKYVSGRCNN" regulatory complement(844384..844389) /regulatory_class="ribosome_binding_site" /gene="modF" /locus_tag="STM0778" /note="putative RBS for modF; RegulonDB:STMS1H001079" gene complement(844445..845245) /gene="modE" /locus_tag="STM0779" /db_xref="GeneID:1252299" CDS complement(844445..845233) /gene="modE" /locus_tag="STM0779" /note="similar to E. coli molybdate uptake regulatory protein (AAC73848.1); Blastp hit to AAC73848.1 (262 aa), 89% identity in aa 1 - 262" /codon_start=1 /transl_table=11 /product="molybdenum-dependent transcriptional regulator" /protein_id="NP_459758.1" /db_xref="GI:16764143" /db_xref="GeneID:1252299" /translation="MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGIS YKSAWDAINDMNQLSEHMLVERATGGKGGGGAVLTRYGQRLIQLYDLLGQIQQKAFDV LSDDDALPLDSLLAAISRFSLQTSARNQWFGTITARDRDLVQQHVDVLLADGKTRLKV ALTAQSGERLGLEEGKEVLILLKAPWVGITRDAAVARAADNQLSGTISHIERGAEQCE VLMALPDGQTLCATIPTSDAATLKEGDDVIAWFNADRVIIATLC" regulatory complement(845240..845245) /regulatory_class="ribosome_binding_site" /gene="modE" /locus_tag="STM0779" /note="putative RBS for modE; RegulonDB:STMS1H001080" gene 845350..845511 /locus_tag="STM0780" /db_xref="GeneID:1252300" regulatory 845350..845355 /regulatory_class="ribosome_binding_site" /locus_tag="STM0780" /note="putative RBS for STM0780; RegulonDB:STMS1H001081" CDS 845362..845511 /locus_tag="STM0780" /note="similar to E. coli orf, hypothetical protein (AAC73849.1); Blastp hit to AAC73849.1 (49 aa), 91% identity in aa 1 - 48" /codon_start=1 /transl_table=11 /product="multidrug efflux pump-associated protein, AcrZ family" /protein_id="NP_459759.1" /db_xref="GI:16764144" /db_xref="GeneID:1252300" /translation="MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGIGQKDQ SRQNR" gene 845608..846451 /gene="modA" /locus_tag="STM0781" /db_xref="GeneID:1252301" regulatory 845608..845616 /regulatory_class="minus_35_signal" /gene="modA" /locus_tag="STM0781" /note="putative -35_signal for modA; RegulonDB:STMLTH004703" regulatory 845635..845643 /regulatory_class="minus_10_signal" /gene="modA" /locus_tag="STM0781" /note="putative -10_signal for modA; RegulonDB:STMLTH004703" regulatory 845666..845671 /regulatory_class="ribosome_binding_site" /gene="modA" /locus_tag="STM0781" /note="putative RBS for modA; RegulonDB:STMS1H001082" CDS 845678..846451 /gene="modA" /locus_tag="STM0781" /note="ABC superfamily (peri_perm); similar to E. coli molybdate-binding periplasmic protein; permease (AAC73850.1); Blastp hit to AAC73850.1 (257 aa), 86% identity in aa 1 - 257" /codon_start=1 /transl_table=11 /product="molybdate ABC transporter substrate-binding protein" /protein_id="NP_459760.1" /db_xref="GI:16764145" /db_xref="GeneID:1252301" /translation="MAHSWLRLVAGATLSFVIAGHALADEGKITVFAAASLTNAMQDI AAEYKKEKNVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAADKKAVDTTTRE TLLGNSLVVVAPKASEQKPFTIDNKTDWIRLLNGGRLAVGDPQHVPAGIYAKEALQKL GAWQTLEPKLAPGEDVRGALALVERNEAPLGIVYGSDAVASKGVNVVATFPEDSHKKV EYPIAIVEGHKNATVSAFYDYLKGPQASAIFKRYGFTTK" gene 846432..847140 /gene="modB" /locus_tag="STM0782" /db_xref="GeneID:1252302" regulatory 846432..846437 /regulatory_class="ribosome_binding_site" /gene="modB" /locus_tag="STM0782" /note="putative RBS for modB; RegulonDB:STMS1H001083" CDS 846451..847140 /gene="modB" /locus_tag="STM0782" /note="ABC superfamily (membrane); similar to E. coli molybdate transport permease protein (AAC73851.1); Blastp hit to AAC73851.1 (229 aa), 95% identity in aa 1 - 229" /codon_start=1 /transl_table=11 /product="molybdate ABC transporter permease" /protein_id="NP_459761.1" /db_xref="GI:16764146" /db_xref="GeneID:1252302" /translation="MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCRFPGK ALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGQWLYDWFGLTFAFSWRGAVLAAAVM SFPLMVRAIRLALEGVDIKLEQAARTLGAGRWRVFLTITLPLTLPGIIVGTVLAFARS LGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESAAARLCVISIVLALISLLISEW LARISRERTGR" gene 847129..848201 /gene="modC" /locus_tag="STM0783" /db_xref="GeneID:1252303" regulatory 847129..847134 /regulatory_class="ribosome_binding_site" /gene="modB" /locus_tag="STM0782" /note="putative RBS for modC; RegulonDB:STMS1H001084" CDS 847143..848201 /gene="modC" /locus_tag="STM0783" /note="ABC superfamily (atp_bind); similar to E. coli ATP-binding component of molybdate transport (AAC73852.1); Blastp hit to AAC73852.1 (352 aa), 91% identity in aa 1 - 352" /codon_start=1 /transl_table=11 /product="molybdenum ABC transporter ATP-binding protein" /protein_id="NP_459762.1" /db_xref="GI:16764147" /db_xref="GeneID:1252303" /translation="MLELNFSQTLGTHCLTLNETLPASGITAIFGVSGAGKTSLINAI SGLTRPQKGRIALNGRVLHDAENGICLTPEKRRIGYVFQDARLFPHYKVRGNLRYGMA KSMTGQFDKLVSLLGIEALLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLD IPRKRELLPYLQRLAREINIPMLYVSHSLDEILHLADKVMVLEDGQVKAFGPLEEVWG SSVMHPWLPKEQQSSILKVSVLEHHPHYAMTALALGDQHLWVNKLNQPLQSTLRIRIQ ASDVSLVLQPPQQTSIRNVLRAKVANCYDDNGQVEVQLEIGGRTLWARISPWARDELN IKPGLWLYAQVKSVSITA" gene complement(848202..849032) /gene="ybhA" /locus_tag="STM0784" /db_xref="GeneID:1252304" CDS complement(848202..849020) /gene="ybhA" /locus_tag="STM0784" /note="similar to E. coli putative phosphatase (AAC73853.1); Blastp hit to AAC73853.1 (272 aa), 84% identity in aa 1 - 272" /codon_start=1 /transl_table=11 /product="pyridoxal phosphatase" /protein_id="NP_459763.1" /db_xref="GI:16764148" /db_xref="GeneID:1252304" /translation="MTARVIALDLDGTLLTPHKTLLPSSLEALSRAKEAGFQLIIVTG RHHVAIHPFYQALALETPAICCNGTYLYDYQAKTVLDADPMPVDKALQLIDLLDEHQI HGLMYVDDAMLYEHPTGHVVRTSRWAQTLPPEQRPTFTQVSSLAQAARDVNAVWKFAL TDEDIPRLQRFGQHVEQALGLECEWSWHDQVDIARKGNSKGKRLTQWIEAQGGSMKNV IAFGDNYNDISMLEAAGTGVAMGNADEAVKARADVVIGDNTTDSIAKFIYTHLL" regulatory complement(849027..849032) /regulatory_class="ribosome_binding_site" /gene="ybhA" /locus_tag="STM0784" /note="putative RBS for ybhA; RegulonDB:STMS1H001085" gene 849173..850179 /gene="ybhE" /locus_tag="STM0785" /db_xref="GeneID:1252305" regulatory 849173..849178 /regulatory_class="ribosome_binding_site" /gene="ybhE" /locus_tag="STM0785" /note="putative RBS for ybhE; RegulonDB:STMS1H001086" CDS 849184..850179 /gene="ybhE" /locus_tag="STM0785" /note="similar to E. coli putative isomerase (AAC73854.1); Blastp hit to AAC73854.1 (331 aa), 91% identity in aa 1 - 331" /codon_start=1 /transl_table=11 /product="6-phosphogluconolactonase" /protein_id="NP_459764.1" /db_xref="GI:16764149" /db_xref="GeneID:1252305" /translation="MKQTVYTASPESQQIHVWSLNHEGTLTLVQVVDVPGQVQPMVVS PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHHGRFVFVGSYN AGNVSVTRLQDGLPVELVDVVEGLDGCHSANITPDNRTLWVPALKQDRICLFTLSDDG HLVAQEPAEVNTVEGAGPRHMVFHPNRQYAYCVNELNSSVDVWQLKNPHGEIECVQTL DMMPADFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSVEGFQPTEAQ PRGFNIDNSGKYLIAAGQKSHHIAVYEITGTQGLLTEKGRYAVGQGPMWVVVNAY" gene complement(850323..851618) /gene="ybhC" /locus_tag="STM0786" /db_xref="GeneID:1252306" CDS complement(850323..851606) /gene="ybhC" /locus_tag="STM0786" /note="similar to E. coli putative pectinesterase (AAC73859.1); Blastp hit to AAC73859.1 (427 aa), 86% identity in aa 1 - 427" /codon_start=1 /transl_table=11 /product="acyl-CoA thioesterase" /protein_id="NP_459765.1" /db_xref="GI:16764150" /db_xref="GeneID:1252306" /translation="MNTLSVSRLALALAFGVTLSACSSTPPDQIPSDQTAPGTASRPI LSANEAKNFVAARYFASLTPNTAPWSPSPITLPAQPDFVVGPAGTPGVTHTSIQAAVD AAMVKRTNKRQYIAIMPGDYQGTVYVPAAPGSLTLYGTGEKPIDVKIGMAIDGEMSVA DWRRAVNPGGKYMPGKPAWYMFDNCQSKHAATIGVMCSAAFWSQNNGLQLQNLTIENT LGDSVDAGNHPAVALRTDGDKVQINKVNILGRQNTFFVTNSGVQNRLQTDRQPRTLVT NSYIEGDVDMVSGRGAVVFDNTNFQVVNSRTQQEAYVFAPATLSNIYYGFLAINSRFN ASGDGVAQLGRSLDVDANTNGQVVIRDSVINEGFNVAKPWADAVISKRPFAGNTGTVD DKDEVQRNLNDTNYNRMWEYNNRGIGSKVVAEPKQ" regulatory complement(851613..851618) /regulatory_class="ribosome_binding_site" /gene="ybhC" /locus_tag="STM0786" /note="putative RBS for ybhC; RegulonDB:STMS1H001087" gene 851838..853067 /gene="hutI" /locus_tag="STM0787" /db_xref="GeneID:1252307" regulatory 851838..851843 /regulatory_class="ribosome_binding_site" /gene="hutI" /locus_tag="STM0787" /note="putative RBS for hutI; RegulonDB:STMS1H001088" CDS 851844..853067 /gene="hutI" /locus_tag="STM0787" /EC_number="3.5.2.7" /codon_start=1 /transl_table=11 /product="imidazolonepropionase" /protein_id="NP_459766.1" /db_xref="GI:16764151" /db_xref="GeneID:1252307" /translation="MRQLLPGDTVWRNIRLATMDPQQQALYGLVDNQALIVREGHICD IVPETQLPVSGDNIHDMQGRLVTPGLIDCHTHLVFAGNRAAEWEQRLNGASYQHISAQ GGGINATVSATRACAEETLYLLARERMMRLASEGVTLLEIKSGYGLELATEEKLLRVA AKLAAENAIDISPTLLAAHATPAEYRDDPDGYITLVCETMIPQLWQKGLFDAVDLFCE SVGFNVAQSERVLQTAKALGIPVKGHVEQLSLLGGAQLVSRYQGLSADHIEYLDEVGV AAMRDGGTVGVLLPGAFYFLRETQRPPVELLRRYQVPVAVASDFNPGTSPFCSLHLAM NMACVQFGLTPEEAWAGVTRHAARALGRQATHGQIRAGYRADFVVWDAEQPVEIVYEP GRNPLYQRVYRGKIS" gene 853057..854005 /gene="hutG" /locus_tag="STM0788" /db_xref="GeneID:1252308" regulatory 853057..853062 /regulatory_class="ribosome_binding_site" /gene="hutG" /locus_tag="STM0788" /note="putative RBS for hutG; RegulonDB:STMS1H001089" CDS 853064..854005 /gene="hutG" /locus_tag="STM0788" /note="similar to E. coli agmatinase (AAC75974.1); Blastp hit to AAC75974.1 (306 aa), 24% identity in aa 47 - 298" /codon_start=1 /transl_table=11 /product="formimidoylglutamase" /protein_id="NP_459767.1" /db_xref="GI:16764152" /db_xref="GeneID:1252308" /translation="MTQWYPASPALWQGRDDSIEAPDARRLFQTVTRSETFSPENWQQ KIALMGFACDEGVKRNAGRPGAAGAPDALRKALANMASHQGHERLVDLGNWVAPTPDL EGAQQALRDAVSRCLRAGMRTLVLGGGHETAFGHGAGVLDAFAQESVGIINLDAHLDL RQTDRATSGTPFRQLAQLCDAQSRAFHYACFGVSRAANTQALWREAQWRNVTVVEDLD CHDALAQMAQFIDKVDKIYLTIDLDVLPVWEMPAVSAPAALGVPLIQVLRLIEPVCRS GKLQAADLVEFNPRFDEDGAAARVAARLGWQIAHWWR" gene 854043..854775 /gene="hutC" /locus_tag="STM0789" /db_xref="GeneID:1252309" regulatory 854043..854048 /regulatory_class="ribosome_binding_site" /gene="hutC" /locus_tag="STM0789" /note="putative RBS for hutC; RegulonDB:STMS1H001090" CDS 854050..854775 /gene="hutC" /locus_tag="STM0789" /note="similar to E. coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1); Blastp hit to AAC73824.1 (240 aa), 24% identity in aa 5 - 229" /codon_start=1 /transl_table=11 /product="histidine utilization repressor" /protein_id="NP_459768.1" /db_xref="GI:16764153" /db_xref="GeneID:1252309" /translation="MYSSRSRSAPAPFYETVKQDICKKIAGGVWQPHDRIPSEAELVA QYGFSRMTINRALRELTDEGWLVRLQGVGTFVAEPKGQSALFEVRSIAEEIAARRHQH RCEVLTLERVRANAIQASALNVNESDVIFHSIMVHYENDLPVQIEDRCVNADIAVDYL TQDYSQTTPHAYLSRIAPLTEGEHIVEAVRATAQECAWLTIKEHEPCLLIRRTTWSAS RIVSHARLLFPGSRYRLQGRFIS" gene 854972..856656 /gene="hutU" /locus_tag="STM0790" /note="pseudogene; frameshift relative to Pseudomonas putida urocanate hydratase (HUTU) (SW:P25080)" /pseudo /db_xref="GeneID:1252310" gene 856651..858178 /gene="hutH" /locus_tag="STM0791" /db_xref="GeneID:1252311" regulatory 856651..856656 /regulatory_class="ribosome_binding_site" /gene="hutH" /locus_tag="STM0791" /note="putative RBS for hutH; RegulonDB:STMS1H001092" CDS 856658..858178 /gene="hutH" /locus_tag="STM0791" /EC_number="4.3.1.3" /codon_start=1 /transl_table=11 /product="histidine ammonia-lyase" /protein_id="NP_459769.1" /db_xref="GI:16764154" /db_xref="GeneID:1252311" /translation="MNTMTLTPGQLSLSQLYDIWRHPVQLRLDASAIDGINASVACVN DIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGVGDPLDDAMVRLIMV LKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGE GKARWQGEWLPAQTALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFAS AVVCGALTTEAVLGSRRPFDARIHAARGQQGQIDVARLFRHLLTDTSAIAESHHHCHK VQDPYSLRCQPQVMGACLTQLRQTKEVLLAEANAVSDNPLVFADAGEVISGGNFHAEP VAMAADNLALAIAEIGALSERRIALMMDKHMSQLPPFLVKNGGVNSGFMIAQVTAAAL ASENKALAHPHSVDSLPTSANQEDHVSMAPAAGRRLWEMAANTRGIIAVEWLAACQGI DLREGLTSSPLLEQARQTLREQVAHYTQDRFFAPDIECATALLAQGALQRLVPDFM" gene complement(858263..858750) /gene="ybhB" /locus_tag="STM0792" /db_xref="GeneID:1252312" CDS complement(858263..858739) /gene="ybhB" /locus_tag="STM0792" /note="similar to E. coli orf, hypothetical protein (AAC73860.1); Blastp hit to AAC73860.1 (158 aa), 93% identity in aa 1 - 158" /codon_start=1 /transl_table=11 /product="kinase inhibitor" /protein_id="NP_459770.1" /db_xref="GI:16764155" /db_xref="GeneID:1252312" /translation="MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDNVPMGTK SFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLTQGFGSGLVAVPDGVIQTRTDFGKAG YGGAAPPKGETHRYIFTVHALDVERLDVDEDASGAMVGFNVHFHSLASASITAMFS" regulatory complement(858745..858750) /regulatory_class="ribosome_binding_site" /gene="ybhB" /locus_tag="STM0792" /note="putative RBS for ybhB; RegulonDB:STMS1H001093" gene complement(858797..860137) /gene="bioA" /locus_tag="STM0793" /db_xref="GeneID:1252313" CDS complement(858797..860086) /gene="bioA" /locus_tag="STM0793" /EC_number="2.6.1.62" /note="similar to E. coli 7,8-diaminopelargonic acid synthetase (AAC73861.1); Blastp hit to AAC73861.1 (429 aa), 86% identity in aa 1 - 427" /codon_start=1 /transl_table=11 /product="adenosylmethionine--8-amino-7-oxononanoate transaminase" /protein_id="NP_459771.1" /db_xref="GI:16764156" /db_xref="GeneID:1252313" /translation="MTTDDLAFDKRHIWHPYTSMTSPLPVYPVERAEGCELVLASGKR LIEGMSSWWAAIHGYNHPQLNAAMKAQIDAMSHVMFGGITHQPAVNLCRKLVAITPEP LECVFLADSGSVSVEVAMKMALQYWQARGESRQRFLTFRHGYHGDTFGAMSVCDPDNS MHSLWKGYLPENLFAPAPQSRMDGEWDESDIAPFARLMAAHRHEIAAVILEPIVQGAG GMRIYHPQWLRRIRNMCDREGILLIADEIATGFGRTGKLFACEHAGIAPDILCLGKAL TGGTMTLSATLTTRQVAETISNGEAGCFMHGPTFMGNPLACAVACANLTLLESGEWRQ QVASIESQLRAELAPAQSSPWVADVRVLGAIGVVETTHPVNMAALQRFFVGQGVWIRP FGKLIYLMPPYIIRPDQLRRLTQAVNDAVHNETFFSH" protein_bind 860093..860133 /note="putative binding site for BirA, RegulonDB: STMS1H000036" /bound_moiety="BirA" regulatory complement(860099..860104) /regulatory_class="ribosome_binding_site" /gene="bioA" /locus_tag="STM0793" /note="putative RBS for bioA; RegulonDB:STMS1H001094" regulatory complement(860110..860118) /regulatory_class="minus_10_signal" /gene="bioA" /locus_tag="STM0793" /note="putative -10_signal for bioA; RegulonDB:STMLTH004704" gene 860127..861213 /gene="bioB" /locus_tag="STM0794" /db_xref="GeneID:1252314" regulatory 860127..860135 /regulatory_class="minus_35_signal" /gene="bioB" /locus_tag="STM0794" /note="putative -35_signal for bioB; RegulonDB:STMLTH004705" regulatory complement(860129..860137) /regulatory_class="minus_35_signal" /gene="bioA" /locus_tag="STM0793" /note="putative -35_signal for bioA; RegulonDB:STMLTH004704" protein_bind complement(860131..860143) /note="putative binding site for BirA, RegulonDB: STMS1H000035" /bound_moiety="BirA" regulatory 860154..860162 /regulatory_class="minus_10_signal" /gene="bioB" /locus_tag="STM0794" /note="putative -10_signal for bioB; RegulonDB:STMLTH004705" regulatory 860160..860165 /regulatory_class="ribosome_binding_site" /gene="bioB" /locus_tag="STM0794" /note="putative RBS for bioB; RegulonDB:STMS1H001095" CDS 860173..861213 /gene="bioB" /locus_tag="STM0794" /EC_number="2.8.1.6" /note="similar to E. coli biotin synthesis, sulfur insertion? (AAC73862.1); Blastp hit to AAC73862.1 (346 aa), 94% identity in aa 1 - 346" /codon_start=1 /transl_table=11 /product="biotin synthase" /protein_id="NP_459772.1" /db_xref="GI:16764157" /db_xref="GeneID:1252314" /translation="MARHPRWTLSQVTELFEKPLLELLFEAQQIHRQHFDPQQVQVST LLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLDSARKAKNAGSTRFCMGAAW RNPHERDMPYLEKIVQGVKAMGLETCMTLGMLNESQAQRLANAGLDYYNHNLDTSPEF YGNIITTRTYQERLDTLEKVREAGIKVCSGGIVGLGETVTDRAGLLLQLANLPTPPES VPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMC FMAGANSIFYGCKLLTTPNPAEDKDLQLFRKLGLNPQQTRVLAGDNEQQQRLEQTLMT PDTDDYYNAAAL" gene 861199..862367 /gene="bioF" /locus_tag="STM0795" /db_xref="GeneID:1252315" regulatory 861199..861204 /regulatory_class="ribosome_binding_site" /gene="bioB" /locus_tag="STM0794" /note="putative RBS for bioF; RegulonDB:STMS1H001096" CDS 861210..862367 /gene="bioF" /locus_tag="STM0795" /EC_number="2.3.1.47" /note="similar to E. coli 8-amino-7-oxononanoate synthase (AAC73863.1); Blastp hit to AAC73863.1 (384 aa), 80% identity in aa 1 - 384" /codon_start=1 /transl_table=11 /product="8-amino-7-oxononanoate synthase" /protein_id="NP_459773.1" /db_xref="GI:16764158" /db_xref="GeneID:1252315" /translation="MSWQQRVDDALTARRVTDTLRRRYVVSQGAGRWLVANGRQYLNF SSNDYLGLSQHPQIIRAWQQAATRFGVGSGGSGHISGYSVAHQALEEELAQWLGYPRA LLFISGFAANQAVITALMKKNDRIVADRLSHASLLEAANLSPAQLRRFIHNDTQHLSR LLQSPCVGQQLVVTEGVYSMDGDSAPLAEIQHIARRHHAWLLVDDAHGIGVTGDEGRG TCWLRGVKPELLVVTFGKGFGVSGAAVLCSESVADYLLQFARHLVYSTSMPPAQAQAL SASLAVIRSDEGGERREKLAALVQRFRAGVNASRFTLLNAHSAIQPLIVGDNSRALRL AEALRQQGCWATAIRPPTVPVGTARLRLTLTQAHEACDIDRLLEVLHGAGE" gene 862338..863106 /gene="bioC" /locus_tag="STM0796" /db_xref="GeneID:1252316" regulatory 862338..862343 /regulatory_class="ribosome_binding_site" /gene="bioC" /locus_tag="STM0796" /note="putative RBS for bioC; RegulonDB:STMS1H001097" CDS 862351..863106 /gene="bioC" /locus_tag="STM0796" /note="similar to E. coli biotin biosynthesis; reaction prior to pimeloyl CoA (AAC73864.1); Blastp hit to AAC73864.1 (251 aa), 70% identity in aa 1 - 251" /codon_start=1 /transl_table=11 /product="malonyl-ACP O-methyltransferase BioC" /protein_id="NP_459774.1" /db_xref="GI:16764159" /db_xref="GeneID:1252316" /translation="MAQVNKQAIAAAFGRAASQYEQHASLQQHSADALLTLLTGRQFA SVLDAGCGPGRMSRYWRERGSEVTALDLSLPMLQQARDRQAAHHYLLADIEAIPHDAE VFDLAWSNLAVQWCGDLRDALSELYRVVRPGGVVAFTTLCQGSLPELRQAWQAVDNRA HANSFLPEEAIDHALRGWRAFRHTQAMTLWFEDALSAMRSLKGIGATHLHEGRESDVL TRARLRQIQLAWPQRQGKYPLTYHLFMGVIERD" gene 863083..863785 /gene="bioD" /locus_tag="STM0797" /db_xref="GeneID:1252317" regulatory 863083..863088 /regulatory_class="ribosome_binding_site" /gene="bioD" /locus_tag="STM0797" /note="putative RBS for bioD; RegulonDB:STMS1H001098" CDS 863099..863785 /gene="bioD" /locus_tag="STM0797" /EC_number="6.3.3.3" /note="similar to E. coli dethiobiotin synthetase (AAC73865.1); Blastp hit to AAC73865.1 (225 aa), 74% identity in aa 1 - 225" /codon_start=1 /transl_table=11 /product="dethiobiotin synthase" /protein_id="NP_459775.1" /db_xref="GI:16764160" /db_xref="GeneID:1252317" /translation="MTKRYFVTGTDTEVGKTVASCALLQAATQLGYQTVGYKPVASGS EMTTDGLRNSDALALQRNSSLPQPYSAINPYTFAEPTSPHIVSADEGRAIDAAVLSRG LRTLEAQADWVLTEGAGGWFTPLSATLTFADWVQTEQLPVILVVGVKLGCINHAMLTA LAVEQAGLPLVGWIANDIQPPGARHGEYLATLRRVIPAPLLGEIPWLGVSPSQAATGQ YLDLSPLERA" protein_bind 864343..864361 /note="putative binding site for LexA, RegulonDB: STMS1H000245" /bound_moiety="LexA" gene 864348..866457 /gene="uvrB" /locus_tag="STM0798" /db_xref="GeneID:1252318" regulatory 864348..864356 /regulatory_class="minus_35_signal" /gene="uvrB" /locus_tag="STM0798" /note="putative -35_signal for uvrB; RegulonDB:STMLTH004706" regulatory 864372..864380 /regulatory_class="minus_10_signal" /gene="uvrB" /locus_tag="STM0798" /note="putative -10_signal for uvrB; RegulonDB:STMLTH004706" regulatory 864423..864428 /regulatory_class="ribosome_binding_site" /gene="uvrB" /locus_tag="STM0798" /note="putative RBS for uvrB; RegulonDB:STMS1H001099" CDS 864436..866457 /gene="uvrB" /locus_tag="STM0798" /note="similar to E. coli DNA repair; excision nuclease subunit B (AAC73866.1); Blastp hit to AAC73866.1 (673 aa), 95% identity in aa 1 - 673" /codon_start=1 /transl_table=11 /product="excinuclease ABC subunit B" /protein_id="NP_459776.1" /db_xref="GI:16764161" /db_xref="GeneID:1252318" /translation="MSKPFKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSG KTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYV PSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLH LTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD EEVERLSLFDPLTGQVESTVPRYTIYPKTHYVTPRERILQAMEEIKDELADRRKVLLA NNKLLEEQRLSQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV SATPGNYELEKSGDEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGKGKGRSTAKAGIVE LDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS" gene 866766..866939 /locus_tag="STM0799" /db_xref="GeneID:1252319" CDS 866766..866939 /locus_tag="STM0799" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_447236.1" /db_xref="GI:1109557597" /db_xref="GeneID:1252319" /translation="MATDYIILLKKEVMEARASISQALQILNDLSEIMTTVTSYLKLR ISLSVTLGYVQIR" gene 866940..869244 /gene="slrP" /locus_tag="STM0800" /db_xref="GeneID:1252320" regulatory 866940..866945 /regulatory_class="ribosome_binding_site" /gene="slrP" /locus_tag="STM0800" /note="putative RBS for slrP; RegulonDB:STMS1H001100" CDS 866947..869244 /gene="slrP" /locus_tag="STM0800" /note="leucine-rich repeat protein SlrP (gi|5107020)" /codon_start=1 /transl_table=11 /product="E3 ubiquitin--protein ligase" /protein_id="NP_459778.1" /db_xref="GI:16764163" /db_xref="GeneID:1252320" /translation="MFNITNIQSTARHQSISNEASTEVPLKEEIWNKISAFFSSEHQV EAQNCIAYLCHPPETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQ EILSIVFNTEGYTVEGGGKSVTYTRVTESEQASSASGSKDAVNYELIWSEWVKEAPAK EAANREEAVQRMRDCLKNNKTELRLKILGLTTIPAYIPEQITTLILDNNELKSLPENL QGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISC LPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGE NALTSLPASLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENLPAALQI MQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQRLMSSVDYQGPRVL FAMGDFSIVRVTRPLHQAVQGWLTSLEEEDVNQWRAFEAEANAAAFSGFLDYLGDTQN TRHPDFKEQVSAWLMRLAEDSALRETVFIIAMNATISCEDRVTLAYHQMQEATLVHDA ERGAFDSHLAELIMAGREIFRLEQIESLAREKVKRLFFIDEVEVFLGFQNQLRESLSL TTMTRDMRFYNVSGITESDLDEAEIRIKMAENRDFHKWFALWGPWHKVLERIAPEEWR EMMAKRDECIETDEYQSRVNAELEDLRIADDSDAERTTEVQMDAERAIGIKIMEEINQ TLFTEIMENILLKKEVSSLMSAYWR" gene complement(869336..870255) /gene="ybhK" /locus_tag="STM0801" /db_xref="GeneID:1252321" CDS complement(869336..870244) /gene="ybhK" /locus_tag="STM0801" /note="similar to E. coli putative structural protein (AAC73867.1); Blastp hit to AAC73867.1 (302 aa), 91% identity in aa 1 - 302" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459779.1" /db_xref="GI:16764164" /db_xref="GeneID:1252321" /translation="MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDN GGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLK ALDHLSVRPLEAINLIRNLLKVDAQLIPMSELPVDLMAIDDQGHEIYGEVNIDQLATP PQEIMLTPNVPATREAVQAINDADLILIGPGSFYTSLMPCLLLDELAQALRRTPAPMV YIGNLGRELSLPAASLTLVDKLAMMEQYIGKKVIDAVVVGPRVDVSAVNDRLVIQEVL EASDIPYRHDRQLLHNALEKALQALG" regulatory complement(870250..870255) /regulatory_class="ribosome_binding_site" /gene="ybhK" /locus_tag="STM0801" /note="putative RBS for ybhK; RegulonDB:STMS1H001101" gene 870632..871630 /gene="moaA" /locus_tag="STM0802" /db_xref="GeneID:1252322" regulatory 870632..870637 /regulatory_class="ribosome_binding_site" /gene="moaA" /locus_tag="STM0802" /note="putative RBS for moaA; RegulonDB:STMS1H001102" CDS 870641..871630 /gene="moaA" /locus_tag="STM0802" /note="similar to E. coli molybdopterin biosynthesis, protein A (AAC73868.1); Blastp hit to AAC73868.1 (329 aa), 92% identity in aa 1 - 329" /codon_start=1 /transl_table=11 /product="cyclic pyranopterin phosphate synthase" /protein_id="NP_459780.1" /db_xref="GI:16764165" /db_xref="GeneID:1252322" /translation="MASQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPGGVTNN GFLTVDEIRRVTRAFASLGTEKVRLTGGEPSLRRDFTDIIAAVGENDAIRQIAVTTNG YRLARDAANWREAGLTGVNVSVDSLDARQFHAITGQDKFRQVMAGIDAAFDAGFEKVK VNTVLMRDVNHHQLDTFLAWIQPRPIQLRFIELMETGEGSDLFRKHHISGQVLRDELI KRGWIHQLRQRSDGPAQVFCHPDYAGEIGLIMPYEKDFCATCNRLRVSSVGKLHLCLF GDGGVSLRDLLQDDAQQYALEERISDALREKKQTHFLHQSNTGITQNLSYIGG" gene 871639..872164 /gene="moaB" /locus_tag="STM0803" /db_xref="GeneID:1252323" regulatory 871639..871644 /regulatory_class="ribosome_binding_site" /gene="moaB" /locus_tag="STM0803" /note="putative RBS for moaB; RegulonDB:STMS1H001103" CDS 871652..872164 /gene="moaB" /locus_tag="STM0803" /note="similar to E. coli molybdopterin biosynthesis, protein B (AAC73869.1); Blastp hit to AAC73869.1 (170 aa), 95% identity in aa 1 - 170" /codon_start=1 /transl_table=11 /product="molybdenum cofactor biosynthesis protein B" /protein_id="NP_459781.1" /db_xref="GI:16764166" /db_xref="GeneID:1252323" /translation="MSQVSAEFIPTRIAILTVSSRRGEEDDTSGHYLRDSAQEAGHEV VAKAIVKENRYAIRAQVSAWIASDEVQVVLITGGTGLTEGDQAPEALLPLFDREVEGF GEVFRMLSFEEIGTATLQSRAVAGVANNTLIFAMPGSTKACRTAWENIIAPQLDARTR PCNFHPHLKK" gene 872156..872652 /gene="moaC" /locus_tag="STM0804" /db_xref="GeneID:1252324" regulatory 872156..872161 /regulatory_class="ribosome_binding_site" /gene="moaC" /locus_tag="STM0804" /note="putative RBS for moaC; RegulonDB:STMS1H001104" CDS 872167..872652 /gene="moaC" /locus_tag="STM0804" /note="similar to E. coli molybdopterin biosynthesis, protein C (AAC73870.1); Blastp hit to AAC73870.1 (161 aa), 94% identity in aa 1 - 161" /codon_start=1 /transl_table=11 /product="molybdenum cofactor biosynthesis protein C" /protein_id="NP_459782.1" /db_xref="GI:16764167" /db_xref="GeneID:1252324" /translation="MSQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMI VDGKHHKGDVFATARIAGIQAAKRTWELIPLCHPLLLSKVEIQLQAEPEHNRVRIESL CRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVDAH D" gene 872632..872890 /gene="moaD" /locus_tag="STM0805" /db_xref="GeneID:1252325" regulatory 872632..872637 /regulatory_class="ribosome_binding_site" /gene="moaD" /locus_tag="STM0805" /note="putative RBS for moaD; RegulonDB:STMS1H001105" CDS 872639..872890 /gene="moaD" /locus_tag="STM0805" /note="similar to E. coli molybdopterin biosynthesis (AAC73871.1); Blastp hit to AAC73871.1 (81 aa), 86% identity in aa 1 - 81" /codon_start=1 /transl_table=11 /product="molybdopterin biosynthesis protein" /protein_id="NP_459783.3" /db_xref="GI:1109557598" /db_xref="GeneID:1252325" /translation="MRMIKVLFFAQVRELTGTDALDLPADFSTVESLRQHLATKSDRW ALALEDGKLLAAVNQTLVSFDHPLTAGDEVAFFPPVTGG" gene 872879..873344 /gene="moaE" /locus_tag="STM0806" /db_xref="GeneID:1252326" regulatory 872879..872884 /regulatory_class="ribosome_binding_site" /gene="moaD" /locus_tag="STM0805" /note="putative RBS for moaE; RegulonDB:STMS1H001106" CDS 872892..873344 /gene="moaE" /locus_tag="STM0806" /note="similar to E. coli molybdopterin converting factor, subunit 2 (AAC73872.1); Blastp hit to AAC73872.1 (150 aa), 91% identity in aa 1 - 150" /codon_start=1 /transl_table=11 /product="molybdenum cofactor biosynthesis protein MoaE" /protein_id="NP_459784.1" /db_xref="GI:16764169" /db_xref="GeneID:1252326" /translation="MHETRIVVGPAPFSVGEEYSWLAARDEDGAVVTFTGKVRNHNLG DSVKALTLEHYPGMTEKALAEIVAKARSRWPLGRVTVIHRVGELWPGDEIVFVGVTSA HRSSAFDAGQFIMDYLKTRAPFWKREATPEGDRWVEARDSDQQLAKRW" gene 873380..874096 /gene="ybhL" /locus_tag="STM0807" /db_xref="GeneID:1252327" regulatory 873380..873385 /regulatory_class="ribosome_binding_site" /gene="ybhL" /locus_tag="STM0807" /note="putative RBS for ybhL; RegulonDB:STMS1H001107" CDS 873392..874096 /gene="ybhL" /locus_tag="STM0807" /note="similar to E. coli orf, hypothetical protein (AAC73873.1); Blastp hit to AAC73873.1 (234 aa), 87% identity in aa 1 - 234" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459785.1" /db_xref="GI:16764170" /db_xref="GeneID:1252327" /translation="MDRFPRSDSIVQARSGLQTYMAQVYGWMTVGLLLTAFIAWYAAN TPAVMMFVFSSKITFFGLIIAQLALVFVLSGLVHKLSAGMATTLFMLYSALTGLTLSS IFIVYTYSSIASTFVVTGGMFGAMSLYGYTTKRDLSGFGNMLFMALIGIVLASLVNFW LKSEALMWAVTYIGVVVFVGLTAYDTQKLKNIGEQIDTRDSANLRKYSILGALTLYLD FINLFLMLLRIFGNRR" gene 874243..874950 /gene="ybhM" /locus_tag="STM0808" /db_xref="GeneID:1252328" CDS 874243..874950 /gene="ybhM" /locus_tag="STM0808" /note="similar to E. coli orf, hypothetical protein (AAC73874.1); Blastp hit to AAC73874.1 (237 aa), 31% identity in aa 24 - 228" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459786.1" /db_xref="GI:16764171" /db_xref="GeneID:1252328" /translation="MGPLAAIRIRQIAFIPSTMLSLTYWYTALGLWCTAGIIWLTLYS HFLITHVQPVVVLWISALLLGLGYGAITCLSRFGTVVATLIYIAIITLTGVSLAYLFS GGATIFVIVGIMFSLNALFIFYLNISSGLFRPLIFMAVSGIIAAIVVNSLVASSTLVW IVSVLTVLVWTLITALEKSTLHGYARMLYHSEFSSLPRCALFGALTLYLGIINAVVTL CRYIILMILEILLSFRP" gene 874968..875582 /locus_tag="STM0809" /db_xref="GeneID:1252329" regulatory 874968..874973 /regulatory_class="ribosome_binding_site" /locus_tag="STM0809" /note="putative RBS for STM0809; RegulonDB:STMS1H001108" CDS 874974..875582 /locus_tag="STM0809" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459787.1" /db_xref="GI:16764172" /db_xref="GeneID:1252329" /translation="MVMMGIMSKLCGKQFWLAFCEAKDVTRAIKNGGEDFNKKCPPAL ISHFITGLSWEHSLPNPAPVCAFSFMLLVGGVCSAHFVFDKFILYWPLNIIIYFGSAI GIMLCVMAEVWLIAKGFILGLRLCVLLFLLNIMLCGTGLFDVLCHQNSELKSDLVIAI IMVVLCRWVMNGETFTMMIRFCLGRRLVRVALQKYLTSQTRK" gene 875583..876150 /locus_tag="STM0810" /db_xref="GeneID:1252330" regulatory 875583..875588 /regulatory_class="ribosome_binding_site" /locus_tag="STM0810" /note="putative RBS for STM0810; RegulonDB:STMS1H001109" CDS 875590..876150 /locus_tag="STM0810" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459788.1" /db_xref="GI:16764173" /db_xref="GeneID:1252330" /translation="MNLMTWLTGKTLAELVKKGQLIPPEIKLPVYPASHYKKNWYEQG IPHGGVIGLTAIMMTMTWIVSINMVIAQFELHNKKHLELVFFLAVGYIAFLTPSNQLL LKGRMSGVIIYRYALLLVIISVTLATFCTLSSVFMGEFHEVLLLLFSWSLLLFSRLQM NTSFFSAYVYFYRIKRVVLESENASA" gene complement(876153..877131) /gene="ybhN" /locus_tag="STM0811" /db_xref="GeneID:1252331" CDS complement(876153..877115) /gene="ybhN" /locus_tag="STM0811" /note="similar to E. coli orf, hypothetical protein (AAC73875.1); Blastp hit to AAC73875.1 (318 aa), 89% identity in aa 1 - 318" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459789.1" /db_xref="GI:16764174" /db_xref="GeneID:1252331" /translation="MAKSHPRWRLAKKVLTWLFFIAVVVLLVVYAKKVDWGDVWTVIR DYNRTALLSAVGLVIVSYLLYGCYDLLGRLYCGHKLAKRQVMLVSFVCYAFNLTLSTW VGGIGMRYRLYSRLGLPGSTITRIFSLSITTNWLGYILLGGIIFTFGIVQLPDHWYID AGTLRILGIVLLLIIAVYLWFCAFAKRRHMTIKGQKLVLPSWKFALAQMAISSANWMA MGAIIWLLMGQDVNYFFVLGVLLVSSIAGVIVHIPAGIGVLEAVFLALLAGEHTSQGT IIAALLAYRVLYYFIPLLLALVCYLILESRAKKLRAKNERAMAK" gene complement(877115..878370) /gene="ybhO" /locus_tag="STM0812" /db_xref="GeneID:1252332" CDS complement(877115..878356) /gene="ybhO" /locus_tag="STM0812" /note="similar to E. coli putative synthetase (AAC73876.1); Blastp hit to AAC73876.1 (413 aa), 86% identity in aa 1 - 413" /codon_start=1 /transl_table=11 /product="cardiolipin synthase B" /protein_id="NP_459790.1" /db_xref="GI:16764175" /db_xref="GeneID:1252332" /translation="MKCGWREGNQIQLLENGDQFYPAVFEAIAQAQQKIILETFILFE DEVGKKLHTALLKAAQRGVKAEVLLDGYGSPDLSDAFVGELTSAGVIFRYYDPRPRLL GLRTNIFRRMHRKIVVIDDRIAFVGGINYSAEHMSDYGPQAKQDYAVRVEGPVVADIL QFEVENLPGQSPARRWWKRHHQAEENRHPGEAQALFVWRDNEEHRDDIERHYLKMLTQ AKREVIIANAYFFPGYRLLHAMRKAARRGVSVKLIVQGEPDMPIVKVGARLLYNYLVK GGVQVYEYRRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANLIIHDRTFNQTLRD NLQGIIVNDCKQVDESMLPKRTWWNLTKSVLAFHFLRHFPALVGWLPAHTPHLAQVPP PAQPEMETQDRVDPENTGVKP" regulatory complement(877126..877131) /regulatory_class="ribosome_binding_site" /gene="ybhN" /locus_tag="STM0811" /note="putative RBS for ybhN; RegulonDB:STMS1H001110" gene complement(878353..879121) /gene="ybhP" /locus_tag="STM0813" /db_xref="GeneID:1252333" CDS complement(878353..879111) /gene="ybhP" /locus_tag="STM0813" /note="similar to E. coli orf, hypothetical protein (AAC73877.1); Blastp hit to AAC73877.1 (253 aa), 86% identity in aa 1 - 253" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459791.1" /db_xref="GI:16764176" /db_xref="GeneID:1252333" /translation="MTQHTRNFSFKVLTINTHKGFTAFNKRFILPELRDAVRTVGADI VCLQEVMGAHEVHPLHIENWPDTTHYEFLADTMWSDFAYGRNAVYPEGHHGNAVLSRY PIEHYENRDVSVGGSEKRGVLYCRITPPMLNRPIHVMCVHLGLRESHRQAQLTMLAGW VNALPESEPVLVAGDFNDWRQKAGPPLNAAGLEEIFTRAHGRPARTFPVSMPLLRLDR IYVKNANASSPTALPLRNWRHLSDHAPLSAEIHL" regulatory complement(878365..878370) /regulatory_class="ribosome_binding_site" /gene="ybhP" /locus_tag="STM0813" /note="putative RBS for ybhO; RegulonDB:STMS1H001111" regulatory complement(879116..879121) /regulatory_class="ribosome_binding_site" /gene="ybhP" /locus_tag="STM0813" /note="putative RBS for ybhP; RegulonDB:STMS1H001112" gene 879231..879654 /gene="ybhQ" /locus_tag="STM0814" /db_xref="GeneID:1252334" regulatory 879231..879236 /regulatory_class="ribosome_binding_site" /gene="ybhQ" /locus_tag="STM0814" /note="putative RBS for ybhQ; RegulonDB:STMS1H001113" CDS 879244..879654 /gene="ybhQ" /locus_tag="STM0814" /note="similar to E. coli orf, hypothetical protein (AAC73878.1); Blastp hit to AAC73878.1 (136 aa), 84% identity in aa 1 - 136" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459792.1" /db_xref="GI:16764177" /db_xref="GeneID:1252334" /translation="MKWQQRVRVATGLGCWQIMLHLLVVAMLVIGWMSGTLVRVGLGL CVLYGVTVLLMLALQRHHEQRWRDVADVLEELTTTWYFGTALIVLWLLSRVLQNNVLL ALAGLAILAGPAVVSLLAKDKKLHHFASKHRIRR" gene complement(879616..880732) /gene="ybhR" /locus_tag="STM0815" /db_xref="GeneID:1252335" CDS complement(879616..880722) /gene="ybhR" /locus_tag="STM0815" /note="similar to E. coli orf, hypothetical protein (AAC73879.1); Blastp hit to AAC73879.1 (368 aa), 95% identity in aa 1 - 368" /codon_start=1 /transl_table=11 /product="ABC transporter permease" /protein_id="NP_459793.1" /db_xref="GI:16764178" /db_xref="GeneID:1252335" /translation="MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLE VTNATIAIYNEDNGKHSVELTQRFARAKAFTHVLLLNSPQEIQPTIDTQKALLLVRFP ADFSRNLDTFQPAPMQLILDGRNSNSAQIAANYLQQIVKEYQQTLMDGKPKPNNSELV VRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQI FVGKAVPALIVATFQATIVLAIGIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISS LCATQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINPIRHFTDITKQIYLK DASLGIVWGSLWPLLVIAATTGSAAYAMFRRKVM" regulatory complement(880727..880732) /regulatory_class="ribosome_binding_site" /gene="ybhR" /locus_tag="STM0815" /note="putative RBS for ybhR; RegulonDB:STMS1H001114" gene complement(880838..881981) /gene="ybhS" /locus_tag="STM0816" /db_xref="GeneID:1252336" CDS complement(880838..881968) /gene="ybhS" /locus_tag="STM0816" /note="similar to E. coli orf, hypothetical protein (AAC73880.1); Blastp hit to AAC73880.1 (377 aa), 94% identity in aa 6 - 377" /codon_start=1 /transl_table=11 /product="ABC transporter permease" /protein_id="NP_459794.1" /db_xref="GI:16764179" /db_xref="GeneID:1252336" /translation="MSKSLSWRRVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFGY GINLDSSKLRVGILLEQQSQEALDFTHAMTGSPYIDATISDNRHELIEKMQAGRIRGL VVIPVDFAQQMARDGDSAPIQVITDGSEPNTANFVQGYVEGIWQIWQQQRAEDRGDTF EPLIDVQTRYWFNPAAISQHFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLST EVTRVELLLCKLIPYYFLGMLAMLLCMLVSVFILGVPYRGSLVILFIITSLFLLSTLG MGLLISTITRNQFNAAQVALNAAFLPSIMLSGFIFQIDSMPAVIRAVTYIIPARYFVS TLQSLFLAGNIPVVLGVNVLFLIASAVMFIGLTWLKTKRRLD" gene complement(881961..883707) /gene="ybhF" /locus_tag="STM0817" /db_xref="GeneID:1252337" CDS complement(881961..883697) /gene="ybhF" /locus_tag="STM0817" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73881.1); Blastp hit to AAC73881.1 (583 aa), 91% identity in aa 6 - 583" /codon_start=1 /transl_table=11 /product="multidrug ABC transporter ATP-binding protein" /protein_id="NP_459795.1" /db_xref="GI:16764180" /db_xref="GeneID:1252337" /translation="MSEAVITLHGLTKRFAGMDKPAVAPLDCTIHSGYVTGLVGPDGA GKTTLMRMLAGLLKADGGSASVLGFDPIQNDSELHAVLGYMPQKFGLYEDLTVMENLN LYADLRSVTGEIREKTFARLLEFTALGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVL LLDEPGVGVDPISRRELWQMVHELAGDGMLILWSTSYLDEAEQCRDVLLMNEGELLYQ GEPKALTQTMAGRSFLMSSPQENNRKLLQRALRLPQVSDGMIQGRSVRLILKKEATAA DIRQAEGMPEITLNETAPRFEDAFIDLLGGAGTSESPLGSILHTVEGTAGETVIEAQE LTKKFGDFAATDHVNFVVQRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGKALVLDMD LKVSSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKIQRMSEAFGL KSIASHPTDALPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVE KGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQAADEQQADPTMEQAFIT LINDWDKEHTHE" regulatory complement(881976..881981) /regulatory_class="ribosome_binding_site" /gene="ybhS" /locus_tag="STM0816" /note="putative RBS for ybhS; RegulonDB:STMS1H001115" gene complement(883690..884700) /locus_tag="STM0818" /db_xref="GeneID:1252338" CDS complement(883690..884685) /locus_tag="STM0818" /note="similar to E. coli putative membrane protein (AAC73882.1); Blastp hit to AAC73882.1 (332 aa), 87% identity in aa 2 - 332" /codon_start=1 /transl_table=11 /product="secretion protein HlyD" /protein_id="NP_459796.1" /db_xref="GI:16764181" /db_xref="GeneID:1252338" /translation="MKKPVVIGLAIAAIVAVIAGGTWWYQSRQDDGLTLYGNVDIRTV NISFRVGGRLASLNVDEGDTIKAGQVLGELDHAPYENALMQAKAGVSVAQAQYDLMLA GYRDEEIAQAAAAVRQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQAT LKSAQDKLSQYRTGNREQDIAQAKASLEQAKAQLAQAQLDLQDTTLIAPANGTLLTRA VEPGSMLNAGSTVLTLSLTRPVWVRAYVDERNLSQTQPGRDILLYTDGRPDKPYHGKI GFVSPTAEFTPKTVETPDLRTDLVYRLRIIVTDADDALRQGMPVTVKFNDEARHE" regulatory complement(883702..883707) /regulatory_class="ribosome_binding_site" /locus_tag="STM0818" /note="putative RBS for ybhF; RegulonDB:STMS1H001116" gene complement(884685..885370) /gene="ybiH" /locus_tag="STM0819" /db_xref="GeneID:1252339" CDS complement(884685..885359) /gene="ybiH" /locus_tag="STM0819" /note="similar to E. coli putative transcriptional regulator (AAC73883.1); Blastp hit to AAC73883.1 (227 aa), 85% identity in aa 5 - 227" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_459797.1" /db_xref="GI:16764182" /db_xref="GeneID:1252339" /translation="MNIPTTTTKGEQAKSQLIAAALAQFGEYGLHATTRDIAALAGQN IAAITYYFGSKEDLYLACAQWIADFLGEKFRPHAEKAERLFSQPAPDRDAIRELILLA CKNMIMLLTQEDTVNLSKFISREQLSPTSAYQLVHEQVIDPLHTHLTRLVAAYTGCDA NDTRMILHTHALLGEVLAFRLGKETILLRTGWPQFDEEKAELIYQTVTCHIDLILHGL TQRSLD" regulatory complement(884695..884700) /regulatory_class="ribosome_binding_site" /gene="ybiH" /locus_tag="STM0819" /note="putative RBS for STM0818; RegulonDB:STMS1H001117" regulatory complement(885365..885370) /regulatory_class="ribosome_binding_site" /gene="ybiH" /locus_tag="STM0819" /note="putative RBS for ybiH; RegulonDB:STMS1H001118" gene 885578..886953 /gene="rhlE" /locus_tag="STM0820" /db_xref="GeneID:1252340" regulatory 885578..885583 /regulatory_class="ribosome_binding_site" /gene="rhlE" /locus_tag="STM0820" /note="putative RBS for rhlE; RegulonDB:STMS1H001119" CDS 885589..886953 /gene="rhlE" /locus_tag="STM0820" /note="similar to E. coli putative ATP-dependent RNA helicase (AAC73884.1); Blastp hit to AAC73884.1 (454 aa), 90% identity in aa 1 - 454" /codon_start=1 /transl_table=11 /product="ATP-dependent RNA helicase RhlE" /protein_id="NP_459798.1" /db_xref="GI:16764183" /db_xref="GeneID:1252340" /translation="MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMAS AQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADR MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASE QVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIH GNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIG RTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQ QRGGGGGRGRGQNQGGAGRSQQPRRQDSGAAKAKPKPRTGEGKTAGDKARPPRRPRRI TPAQ" gene 887150..889305 /gene="dinG" /locus_tag="STM0821" /db_xref="GeneID:1252341" regulatory 887150..887155 /regulatory_class="ribosome_binding_site" /gene="dinG" /locus_tag="STM0821" /note="putative RBS for dinG; RegulonDB:STMS1H001120" CDS 887161..889305 /gene="dinG" /locus_tag="STM0821" /note="similar to E. coli probably ATP-dependent helicase (AAC73886.1); Blastp hit to AAC73886.1 (716 aa), 91% identity in aa 1 - 716" /codon_start=1 /transl_table=11 /product="ATP-dependent DNA helicase DinG" /protein_id="NP_459799.1" /db_xref="GI:16764184" /db_xref="GeneID:1252341" /translation="MALTAALKAQIAAWYKALQDQIPDFIPRAPQRQMIADVARTLAG EEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIFSKDLPLLRK IIPDLRFTAAFGRGRYVCPRNLAALASSEPTQQDLLAFLDDELTPNNQEEQKRCARLK GDLDGYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCHYYRECPFFVARREIQEAE VVVANHALVMAAMESEAVLPEPKHLLLVLDEGHHLPDVARDALEMSAEITASWYRLQL DLFSKLVATCMEQFRPKTTPPLANPERLNAHCEEVYELIASLNAILNLYMPAAQEAEH RFAMGELPDEVMEICQRLAKLTETLRGLAESFLNDLSEKTGSHDIVRLHRVILQMNRA LGMFEAQSKLWRLASMAQSSGAPVSKWATREIREGQLHVWFHCVGIRVSDQLERLLWR SVPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHVEQGKLVIPQMRYE PTIDNEEQHIAEMAAYFREQLESKKHHGMLVLFASGRAMQRFLEHVADVRLLLLVQGD QPRYRLVELHRKRVESGERSVLVGLQSFAEGLDLKGELLTQVHIHKIAFPPIDSPVVI TEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHACRGEVVIYDKRLLTKNYGQR LLNALPVFPIEQPAVPDVIVKPKAKPARRRRR" gene 889323..890309 /gene="ybiB" /locus_tag="STM0822" /db_xref="GeneID:1252342" regulatory 889323..889328 /regulatory_class="ribosome_binding_site" /gene="ybiB" /locus_tag="STM0822" /note="putative RBS for ybiB; RegulonDB:STMS1H001121" CDS 889335..890309 /gene="ybiB" /locus_tag="STM0822" /note="similar to E. coli putative enzyme (AAC73887.1); Blastp hit to AAC73887.1 (320 aa), 84% identity in aa 1 - 320" /codon_start=1 /transl_table=11 /product="DNA-binding protein YbiB" /protein_id="NP_459800.1" /db_xref="GI:16764185" /db_xref="GeneID:1252342" /translation="MDYRKIIKEIGRGKNHARDLDLDTARGLYTRMLNGDVPDLEMGS ILMALRIKGEGEAEMLGFYEAMQNHTIKLTPPADRPLPVVIPSYNGARKQANLTPLLA ILLHKLGFPVVVHGVSEDPTRVLTETIFELMGIIPTLHGGQAQAKLDGRQPVFIPVSA LCPPLEKQLAMRWRMGVRNSAHSLAKLATPFAEDAALRLSSVSHPEYVPRVATFFSRI GGRALLMHGTEGEVYANPQRCPQISLIDSRGVQVLHERQSDTYDEPLSLPATKDPEIT ARWIERCLAGHEPVPQSLKTQMACCLVATGEAATLEDGLARVEQAFSE" gene complement(890465..890737) /gene="ybiJ" /locus_tag="STM0823" /db_xref="GeneID:1252343" CDS complement(890465..890725) /gene="ybiJ" /locus_tag="STM0823" /note="similar to E. coli orf, hypothetical protein (AAC73889.1); Blastp hit to AAC73889.1 (86 aa), 80% identity in aa 1 - 86" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459801.1" /db_xref="GI:16764186" /db_xref="GeneID:1252343" /translation="MKTIKYAVAAIALSTLSFGAFAAEPVSASQTQNLHKIGVVSADG ATTLDGLEAKLAEKAAAAGASAYNITSAVGNDKMSGTAVIYK" regulatory complement(890732..890737) /regulatory_class="ribosome_binding_site" /gene="ybiJ" /locus_tag="STM0823" /note="putative RBS for ybiJ; RegulonDB:STMS1H001122" gene complement(891010..891288) /gene="ybiI" /locus_tag="STM0825" /db_xref="GeneID:1252344" CDS complement(891010..891276) /gene="ybiI" /locus_tag="STM0825" /note="similar to E. coli orf, hypothetical protein (AAC73890.1); Blastp hit to AAC73890.1 (88 aa), 80% identity in aa 1 - 88" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459802.1" /db_xref="GI:16764187" /db_xref="GeneID:1252344" /translation="MASGWANDDAVNEQINNTIEDAVARARGELPHGESRDECESCGD PIPEARRKAVPGVRLCIACQQEKDLHNATFSGYNRRGSKDSQLR" regulatory complement(891283..891288) /regulatory_class="ribosome_binding_site" /gene="ybiI" /locus_tag="STM0825" /note="putative RBS for ybiI; RegulonDB:STMS1H001124" gene 891469..892407 /gene="ybiN" /locus_tag="STM0826" /db_xref="GeneID:1252345" regulatory 891469..891474 /regulatory_class="ribosome_binding_site" /gene="ybiN" /locus_tag="STM0826" /note="putative RBS for ybiN; RegulonDB:STMS1H001125" CDS 891481..892407 /gene="ybiN" /locus_tag="STM0826" /note="similar to E. coli orf, hypothetical protein (AAC73894.1); Blastp hit to AAC73894.1 (335 aa), 84% identity in aa 28 - 335" /codon_start=1 /transl_table=11 /product="23S rRNA (adenine(1618)-N(6))-methyltransferase" /protein_id="NP_459803.1" /db_xref="GI:16764188" /db_xref="GeneID:1252345" /translation="MSAQKPGLHPRNRHQHRYDLAALCQTTPELTSFLIRTPAGEQSV DFANPQAVKALNKALLAHFYAVTHWDIPPGFLCPPVPGRADYIHHLADLLGETTGSIP AQATILDVGVGANCIYPLIGVHEYGWRFTGSEVSDAAMSSAQAIIQANTGLSRAIRLR RQKDPAAIFTGIIHKNEFYDATLCNPPFHDSAAAARAGSERKRRNLGQNKDDALNFGG QQQELWCEGGEVAFIKKMIAESQSFRRQVLWFTTLVSRGENLPPLYRALTEAGAVKVV KKEMAQGQKQSRFIAWTFMDDDQRRRFITRKR" gene complement(892404..894634) /gene="ybiO" /locus_tag="STM0827" /db_xref="GeneID:1252346" CDS complement(892404..894626) /gene="ybiO" /locus_tag="STM0827" /note="similar to E. coli putative transport protein (AAC73895.1); Blastp hit to AAC73895.1 (786 aa), 85% identity in aa 46 - 786" /codon_start=1 /transl_table=11 /product="mechanosensitive channel protein" /protein_id="NP_459804.1" /db_xref="GI:16764189" /db_xref="GeneID:1252346" /translation="MRWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKK AAYAALADVLENEASRNELIAQLREASTTPPTEPAPALAPPAAKDEKTVLENVTTVTR QYGDAFATRFAQLYRNITDAPHKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPL YRKMGLWARKKNRERSNWLQLPAMIVGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIA FQQSLFLNAFALIEFFKAILRLIFCPNVPELRPFAIQDATARYWNRRMSSLSSLIGYG LIVAVPIISNQVNVQVGAMANVAIMLCITIWALYLIFKNKAEITQHLLSLAERSLAFF SLFIRAFALVWHWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFISGMF TRWIAKTITLSPHTQRNYPELQKRLNGWLSSALKVARFLTVCVAVMLLLNAWGLFDFW HWLHYGAGEKMVDILIRIALILFFSAVGWTILASLIENRLASDIHGRPLPSARTRTLL TLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFI QFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGIGS VVANYDVDRHEDADKANQALKDAVTALMETEDIRGLIIGEPTFAGIVSLTNTAFTLRV SFTTLPLKQWTVRFALDSQVKKHFDLANVRAPVQTYQVLPAPVGGPSPDSLPPREPTI " regulatory complement(894629..894634) /regulatory_class="ribosome_binding_site" /gene="ybiO" /locus_tag="STM0827" /note="putative RBS for ybiO; RegulonDB:STMS1H001126" gene complement(894745..895482) /gene="glnQ" /locus_tag="STM0828" /db_xref="GeneID:1252347" CDS complement(894745..895467) /gene="glnQ" /locus_tag="STM0828" /note="ABC superfamily (atp_bind); similar to E. coli ATP-binding component of glutamine high-affinity transport system (AAC73896.1); Blastp hit to AAC73896.1 (240 aa), 95% identity in aa 1 - 240" /codon_start=1 /transl_table=11 /product="glutamine ABC transporter ATP-binding protein" /protein_id="NP_459805.1" /db_xref="GI:16764190" /db_xref="GeneID:1252347" /translation="MIEFKNVSKHFGPTQVLHNIDLNIRQGEVVVIIGPSGSGKSTLL RCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP LRVRGVKKEEAEKQAKALLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLF DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDG SPQALIENPPSPRLQEFLQHVS" gene complement(895464..896135) /gene="glnP" /locus_tag="STM0829" /db_xref="GeneID:1252348" CDS complement(895464..896123) /gene="glnP" /locus_tag="STM0829" /note="ABC superfamily (membrane); similar to E. coli glutamine high-affinity transport system; membrane component (AAC73897.1); Blastp hit to AAC73897.1 (219 aa), 96% identity in aa 1 - 219" /codon_start=1 /transl_table=11 /product="glutamine ABC transporter permease GlnP" /protein_id="NP_459806.1" /db_xref="GI:16764191" /db_xref="GeneID:1252348" /translation="MQFDWSAIWPAIPLLLEGAKMTLWISVLGLAGGLVIGLAAGFAR TFGGWFANHIALVFIEIIRGTPIVVQVMFIYFALPMAFNDLRIDPFSAAVVTIMINSG AYIAEITRGAVLSIHKGFREAGLALGLSRRETIRHVILPLALRRMLPPLGNQWIISIK DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMKI L" regulatory complement(895477..895482) /regulatory_class="ribosome_binding_site" /gene="glnP" /locus_tag="STM0829" /note="putative RBS for glnQ; RegulonDB:STMS1H001127" regulatory complement(896130..896135) /regulatory_class="ribosome_binding_site" /gene="glnP" /locus_tag="STM0829" /note="putative RBS for glnP; RegulonDB:STMS1H001128" gene complement(896267..897024) /gene="glnH" /locus_tag="STM0830" /db_xref="GeneID:1252349" CDS complement(896267..897013) /gene="glnH" /locus_tag="STM0830" /note="ABC superfamily (bind_prot); similar to E. coli periplasmic glutamine-binding protein; permease (AAC73898.1); Blastp hit to AAC73898.1 (248 aa), 96% identity in aa 1 - 248" /codon_start=1 /transl_table=11 /product="glutamine ABC transporter substrate-binding protein GlnH" /protein_id="NP_459807.1" /db_xref="GI:16764192" /db_xref="GeneID:1252349" /translation="MKSLLKVSLAALTLAFAVSSHAADKKLVVATDTAFVPFEFKQGD KYVGFDVDLWDAIAKELKLDYTLKPMDFSGIIPALQTKNIDLALAGITITDERKKAID FSDGYYKSGLLVMVKANNNDIKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPN IDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGESLEAQQYGVAFPKGSDEL REKVNGALKTLRENGTYNEIYKKWFGTEPK" regulatory complement(897019..897024) /regulatory_class="ribosome_binding_site" /gene="glnH" /locus_tag="STM0830" /note="putative RBS for glnH; RegulonDB:STMS1H001129" protein_bind complement(897123..897131) /note="putative binding site for NR(I), RegulonDB: STMS1H000294" /bound_moiety="NR(I)" protein_bind complement(897132..897145) /note="putative binding site for IHF, RegulonDB: STMS1H000224" /bound_moiety="IHF" protein_bind complement(897140..897155) /note="putative binding site for NR(I), RegulonDB: STMS1H000295" /bound_moiety="NR(I)" protein_bind complement(897169..897185) /note="putative binding site for NR(I), RegulonDB: STMS1H000297" /bound_moiety="NR(I)" protein_bind complement(897181..897195) /note="putative binding site for IHF, RegulonDB: STMS1H000221" /bound_moiety="IHF" protein_bind complement(897243..897259) /note="putative binding site for NR(I), RegulonDB: STMS1H000291" /bound_moiety="NR(I)" gene complement(897490..898127) /gene="dps" /locus_tag="STM0831" /db_xref="GeneID:1252350" CDS complement(897490..897993) /gene="dps" /locus_tag="STM0831" /note="similar to E. coli global regulator, starvation conditions (AAC73899.1); Blastp hit to AAC73899.1 (167 aa), 95% identity in aa 1 - 167" /codon_start=1 /transl_table=11 /product="DNA starvation/stationary phase protection protein Dps" /protein_id="NP_459808.1" /db_xref="GI:16764193" /db_xref="GeneID:1252350" /translation="MSTAKLVKTKASNLLYTRNDVSESDKKATVELLNRQVIQFIDLS LITKQAHWNMRGANFIAVHEMLDGFRTALTDHLDTMAERAVQLGGVALGTTQVINSKT PLKSYPLDIHNVQDHLKELADRYAVVANDVRKAIGEAKDEDTADIFTAASRDLDKFLW FIESNIE" regulatory complement(898002..898007) /regulatory_class="ribosome_binding_site" /gene="dps" /locus_tag="STM0831" /note="putative RBS for dps; RegulonDB:STMS1H001130" regulatory complement(898100..898108) /regulatory_class="minus_10_signal" /gene="dps" /locus_tag="STM0831" /note="putative -10_signal for dps; RegulonDB:STMLTH004707" regulatory complement(898119..898127) /regulatory_class="minus_35_signal" /gene="dps" /locus_tag="STM0831" /note="putative -35_signal for dps; RegulonDB:STMLTH004707" protein_bind complement(898121..898135) /note="putative binding site for IHF, RegulonDB: STMS1H000230" /bound_moiety="IHF" gene complement(898296..899194) /gene="ybiF" /locus_tag="STM0832" /db_xref="GeneID:1252351" CDS complement(898296..899183) /gene="ybiF" /locus_tag="STM0832" /note="hypothetical protein in dps-ompX intergenic region. (SW:YBIF_SALTY)" /codon_start=1 /transl_table=11 /product="threonine/homoserine exporter RhtA" /protein_id="NP_459809.1" /db_xref="GI:16764194" /db_xref="GeneID:1252351" /translation="MPGSTRKLPVWLPILVLLIAMSSIQSGASLAKSLFPLVGAPGVT ALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGLSLGGMNYLFYLSIQTVPLGIAVA LEFTGPLAVALFSSRRPVDFIWVVLAVLGLWFLLPLGQDMSHVDLTGAALALGAGACW AVYILTGQRAGAEHGPATVAVGSLIAAIIFVPIGAVQAGDALWHWSILPLGLAVAVLS TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTGIQILALCAIIAAS MGSTLTIRREPQIKQVDVK" regulatory complement(899189..899194) /regulatory_class="ribosome_binding_site" /gene="ybiF" /locus_tag="STM0832" /note="putative RBS for ybiF; RegulonDB:STMS1H001131" gene 899528..900052 /gene="ompX" /locus_tag="STM0833" /db_xref="GeneID:1252352" regulatory 899528..899533 /regulatory_class="ribosome_binding_site" /gene="ompX" /locus_tag="STM0833" /note="putative RBS for ompX; RegulonDB:STMS1H001132" CDS 899537..900052 /gene="ompX" /locus_tag="STM0833" /note="similar to E. coli outer membrane protein X (AAC73901.1); Blastp hit to AAC73901.1 (171 aa), 91% identity in aa 1 - 171" /codon_start=1 /transl_table=11 /product="outer membrane protein OmpX" /protein_id="NP_459810.1" /db_xref="GI:16764195" /db_xref="GeneID:1252352" /translation="MKKIACLSALAAVLAFSAGTAVAATSTVTGGYAQSDAQGVANKM SGFNLKYRYEQDDNPLGVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAYRLNDWASI YGVVGVGYGKFQTTDYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDV GTWIAGVGYRF" gene complement(900115..901702) /gene="ybiP" /locus_tag="STM0834" /db_xref="GeneID:1252353" CDS complement(900115..901695) /gene="ybiP" /locus_tag="STM0834" /note="similar to E. coli putative enzyme (AAC73902.1); Blastp hit to AAC73902.1 (527 aa), 84% identity in aa 1 - 526" /codon_start=1 /transl_table=11 /product="phosphoethanolamine transferase" /protein_id="NP_459811.1" /db_xref="GI:16764196" /db_xref="GeneID:1252353" /translation="MNSTLIDSLLARRRAVSPWAGLYFLQSLLINLALGYPFSLLYTA AFTCLLLLLWRYLPRGQKALLGICSLVAACYFPFGQAYGAPNFNTLLALHSTNMEESS EILTIFPWYSYLTGLFIFALGIIALRRRKEEARPRWNSLDSLCLLISVAAFFVAPVQN LAWGGVFKVIDTGYPVFRFAKDVIVNNNEVIEEQHRMAQLSGIKDSWTVTAVKPRYHI YVVVIGESARRDAMGAFGGHWDNTPFASHVNGDFFMDYIAASGSTQKSLGLTLNRVVD NKPQYQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEAHFLKNGDFEADK NTRDEALLTMTAQVLATERTQPQLIVLHLMGSHPQACDRTQGKYATFVQSKETSCYLY TMTQTDDLLRQLYTQLRHSGDSFSLVYFSDHGLAFKERGKAVQYLAHDDKFQQNFQVP FMVLSSDSKAHRIIKARRSANDFLSFFSQWTGISAKEIKNRYRFISEQKAGPVYITNF KLQKVDYNHLGSDIFSLK" regulatory complement(901697..901702) /regulatory_class="ribosome_binding_site" /gene="ybiP" /locus_tag="STM0834" /note="putative RBS for ybiP; RegulonDB:STMS1H001133" gene 902263..902747 /locus_tag="STM0835" /db_xref="GeneID:1252354" regulatory 902263..902268 /regulatory_class="ribosome_binding_site" /locus_tag="STM0835" /note="putative RBS for STM0835; RegulonDB:STMS1H001134" CDS 902274..902747 /locus_tag="STM0835" /note="similar to E. coli putative toxin (AAC73904.1); Blastp hit to AAC73904.1 (155 aa), 92% identity in aa 1 - 153" /codon_start=1 /transl_table=11 /product="transcriptional regulator MntR" /protein_id="NP_459812.1" /db_xref="GI:16764197" /db_xref="GeneID:1252354" /translation="MGRRAGTPTTKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVEL ISDLIIEVGEARQVDMAARLGVSQPTVAKMLKRLASLGFIQMIPWRGVFLTPEGEKLA QESRERHQIVENFLLVLGVSPEIARRDAEGMEHHVSQETLDAFLAFTQQHGTSAE" gene 902728..903856 /gene="ybiR" /locus_tag="STM0836" /db_xref="GeneID:1252355" regulatory 902728..902733 /regulatory_class="ribosome_binding_site" /locus_tag="STM0835" /note="putative RBS for ybiR; RegulonDB:STMS1H001135" CDS 902744..903856 /gene="ybiR" /locus_tag="STM0836" /note="similar to E. coli orf, hypothetical protein (AAC73905.1); Blastp hit to AAC73905.1 (372 aa), 83% identity in aa 1 - 370" /codon_start=1 /transl_table=11 /product="anion transporter" /protein_id="NP_459813.1" /db_xref="GI:16764198" /db_xref="GeneID:1252355" /translation="MSLAFLRALRRDRFFQLLIIVGMALSLFVPFAPRAWPGAIDWHT IITLSGLMLLTKGVELSGYFDVLGRKMTRRFHTERQLAMFLVLAAAALSTFLTNDVAL FIVVPLTITLKKLCAIPVNRLIIFEALAVNAGSLLTPVGNPQNILLWGRSGLTFAEFS GQMAPLAVMMMLTLLLLCWFCFPGRALQYHTGTRSPQWQPRLVWSCLALYVVFLTALE LRQELWGLVLVAAGFIVLARRVIVSVDWTLLLVFMAMFIDVHLLTQLPALQGVFNQVG ALSHLGLWLTAIGLSQIISNVPSTILLLNYVPASTLLAWAVNIGGFGLLPGSLANLIA LRMANDRRIWWRFHFYSLPMLAWAALVGYGLLQLMP" gene complement(903900..904836) /gene="ybiS" /locus_tag="STM0837" /db_xref="GeneID:1252356" CDS complement(903900..904820) /gene="ybiS" /locus_tag="STM0837" /note="similar to E. coli orf, hypothetical protein (AAC73906.1); Blastp hit to AAC73906.1 (306 aa), 92% identity in aa 1 - 306" /codon_start=1 /transl_table=11 /product="L,D-transpeptidase" /protein_id="NP_459814.1" /db_xref="GI:16764199" /db_xref="GeneID:1252356" /translation="MNMKLTTLFAAAFAVVGFCKTASAVTYPLPTDGSRLIGQNQVIT VPEGNTQPLEYFAAEYQMGLSNMLEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGII INSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE YRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNDDI KFLFENVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGKEAVPITLNKS ILAVTNEPDVDQTVVQQAVQDRSGMPVRLN" regulatory complement(904831..904836) /regulatory_class="ribosome_binding_site" /gene="ybiS" /locus_tag="STM0837" /note="putative RBS for ybiS; RegulonDB:STMS1H001136" gene 905027..906631 /gene="ybiT" /locus_tag="STM0838" /db_xref="GeneID:1252357" regulatory 905027..905032 /regulatory_class="ribosome_binding_site" /gene="ybiT" /locus_tag="STM0838" /note="putative RBS for ybiT; RegulonDB:STMS1H001137" CDS 905039..906631 /gene="ybiT" /locus_tag="STM0838" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73907.1); Blastp hit to AAC73907.1 (530 aa), 96% identity in aa 1 - 530" /codon_start=1 /transl_table=11 /product="ABC-F family ATPase" /protein_id="NP_459815.1" /db_xref="GI:16764200" /db_xref="GeneID:1252357" /translation="MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFM KILGGDLEPTLGNVSLDPNERIGKLRQDQFAFETFTVLDTVIMGHGELWEVKQERDRI YALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPLEQHYGLMSEVAPGW KLRVLLAQALFSNPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMV CTHMADLDYGDLRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANA SKSRQATSRARQIDKIKLEEVKASSRQNPFIRFEQDKKLFRNALEVEALTKGFDNGPL FKNVNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLDADHGTVKWSENARIGYYAQDHE YEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFG KLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRVIEI TPERVVDFSGNYDDYLRSKGIE" gene 907240..907983 /locus_tag="STM0839" /db_xref="GeneID:1252358" CDS 907240..907983 /locus_tag="STM0839" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459816.1" /db_xref="GI:16764201" /db_xref="GeneID:1252358" /translation="MLRNYHSSMKQATCELVPELDFFGLAGWGKHVISMVGFKTPYPQ ESIEQCVAPAHYPQEVKEQVRATSANIILYYKGYDTSPLEQYVALAVVAGALSNMGAV AVLNESAHTSLPAGVFKSQELGKHSLEMLREGFPLTSLFCGFVKYEVEDIEGVWMRTY GADCFGLPDFAAHAQGHHEGQKYSDIFNNVLRYLLESGAEMAAGHTMQVGKTTFMKLR DPLDDEYYLQGPGTTLVVELIEEDECNAH" gene complement(908012..908739) /gene="ybiV(2)" /locus_tag="STM0840" /db_xref="GeneID:1252359" CDS complement(908012..908731) /gene="ybiV(2)" /locus_tag="STM0840" /note="similar to E. coli orf, hypothetical protein (AAC73909.1); Blastp hit to AAC73909.1 (271 aa), 94% identity in aa 33 - 269" /codon_start=1 /transl_table=11 /product="sugar-phosphatase" /protein_id="NP_459817.1" /db_xref="GI:16764202" /db_xref="GeneID:1252359" /translation="MKKRGIEFVVASGNQYYQLISFFPELKDAISFVAENGALVYEHG KQLFHGELTRHESRIIIGELLKDKQLNFVACGLQSAYVSENAPEAFVTLMAKHYHRLK PVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVTLDGIMKPVTSGFGFIDLIIPGLHK ANGISRLLKRWDLPPQNMVAIGDSGNDAEMLKMAHYSFAMDNAAENIKQIARYATDNN KHEGALNVIQAVLENKVPFTL" regulatory complement(908734..908739) /regulatory_class="ribosome_binding_site" /gene="ybiV(2)" /locus_tag="STM0840" /note="putative RBS for ybiV(2); RegulonDB:STMS1H001138" gene complement(908936..910210) /gene="ybiU" /locus_tag="STM0841" /db_xref="GeneID:1252360" CDS complement(908936..910201) /gene="ybiU" /locus_tag="STM0841" /note="similar to E. coli orf, hypothetical protein (AAC73908.1); Blastp hit to AAC73908.1 (421 aa), 85% identity in aa 1 - 421" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459818.1" /db_xref="GI:16764203" /db_xref="GeneID:1252360" /translation="MTTPFTHETLPADPKAAIRQMKQALRAQIGDVQAVFDRLSATIA ARVAEINDLKAQGQPVWPIIPFSELAMGNISDATRAEVKRRGCAVIKGHFPREQALAW DQSMLDYLDKNHFDEVYKGPGDNFFGTLSASRPEIYPVYWSQAQMQARQSEEMALAQS FLNRLWQVEHDGKRWFNPDISIIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQ QVFASVFNGNVEQYDPWNAAHRTDVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLL HVVPIPEAMAYILLRPLLDDVPEDELCGVAPGRVLPISEQWHPLLMAALTSIPPLEAG DSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYARKVKAALETGASPGDFP REDYETTWEGRFTLRDLNIHGKRALGIDV" regulatory complement(910205..910210) /regulatory_class="ribosome_binding_site" /gene="ybiU" /locus_tag="STM0841" /note="putative RBS for ybiU; RegulonDB:STMS1H001139" gene 910450..911272 /gene="ybiV(1)" /locus_tag="STM0842" /db_xref="GeneID:1252361" regulatory 910450..910455 /regulatory_class="ribosome_binding_site" /gene="ybiV(1)" /locus_tag="STM0842" /note="putative RBS for ybiV(1); RegulonDB:STMS1H001140" CDS 910463..911272 /gene="ybiV(1)" /locus_tag="STM0842" /note="similar to E. coli orf, hypothetical protein (AAC73909.1); Blastp hit to AAC73909.1 (271 aa), 88% identity in aa 1 - 269" /codon_start=1 /transl_table=11 /product="sugar-phosphatase" /protein_id="NP_459819.1" /db_xref="GI:16764204" /db_xref="GeneID:1252361" /translation="MTVNVVVTDMDGTFLDDAKQYDRVRFMAQYQELKKRNIEFVVAS GNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQL NFVACGLKSAYVSKNAPETFVALMAKHYHRLQPVNDYHDIDDILFKFSLNLPDEQIPL VIDKLHVSLDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWNRSPQNVVAIGDSGN DAEMLKMAHYSFAMGNAADNIKALSRYHTDDNNHQGALNVIQAVLDGTDPF" gene complement(911350..913795) /gene="pflF" /locus_tag="STM0843" /db_xref="GeneID:1252362" CDS complement(911350..913782) /gene="pflF" /locus_tag="STM0843" /EC_number="2.3.1.54" /note="similar to E. coli putative formate acetyltransferase (AAC73910.1); Blastp hit to AAC73910.1 (810 aa), 95% identity in aa 1 - 810" /codon_start=1 /transl_table=11 /product="glycyl radical enzyme" /protein_id="NP_459820.1" /db_xref="GI:16764205" /db_xref="GeneID:1252362" /translation="MTQLKLDTLSDRIKAHKTALVHIVKPPVCTERAQHYTEMYQQHL DKPIPVRRALALAHHLAERTIWIKHDELIVGNQASEVRAAPIFPEYTVSWIEKEIDDL ADRPGAGFSVSEENKRILHDVCPWWRGQTVQDRCYGMFTDEQKGLLATGIIKAEGNMT SGDAHLAVNFPLLLEKGLYGLRDKVAERRSRINLTVLEDLHGEQFLKAIDIVLDAVSQ HITRFAALARQMAGEESRESRRKELLTIAENCEVIAHQPPQTFWQALQLCYFIQLILQ IESNGHSVSFGRMDQYLYPYYRRDVELNQTLDREHAIELLHSCWLKLLEVNKIRSGSH SKASAGSPLYQNVTIGGQKLINGQPMDAVNPLSYAILESCGRLRSTQPNLSVRYHAGM SNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYAAIGCIETAVGGKW GYRCTGMSFINFARVMLAALEGGRDATSGKVFLPQEKALSAGNFNNFDEVMAAWDTQI RYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGI ANLGNSLAAVKKLVFEQGVIGQQQLAAALADDFDGLTHEQLRQRLINGAPKYGNDDDT VDTLLARAYQTYIDELKQYHNPRYGRGPVGGNYYAGTSSISANVPFGAATMATPDGRK AHTPLAEGASPASGTDHLGPTAVIGSVGKLPTGSILGGVLLNQKLNPTTLENESDKQK LMVLLRTFFEVHKGWHIQYNIVSRETLLDAKKHPDQYRDLVVRVAGYSAFFTALSPDA QDDIIARTEHML" gene complement(913788..914697) /gene="pflE" /locus_tag="STM0844" /db_xref="GeneID:1252363" CDS complement(913788..914687) /gene="pflE" /locus_tag="STM0844" /EC_number="1.97.1.4" /note="similar to E. coli putative pyruvate formate-lyase 2 activating enzyme (AAC73911.1); Blastp hit to AAC73911.1 (308 aa), 87% identity in aa 10 - 308" /codon_start=1 /transl_table=11 /product="pyruvate formate lyase-activating protein" /protein_id="NP_459821.1" /db_xref="GI:16764206" /db_xref="GeneID:1252363" /translation="MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARAQDL LYDARLCLEGCDLCAQAAPDVIERALNGLLIHREKLTDAHFSILAHCCPTQALTVCGE IKSVDEIMATVLRDKPFYDRSGGGLTLSGGEPFMQPELAAELFKASHDAGIHTAVETC LHVPWKYIAPSLPYIDLFLADLKHVADGPFKQWTDGSASRVLENLRKLAAAGKKMVIR VPLIQGFNADEEAIKAITDFAADELHVGEIHFLPYHTLGINKYHLLSQPYHAPDKPLD APALLDFAQKYACQKGLTATLRG" regulatory complement(913790..913795) /regulatory_class="ribosome_binding_site" /gene="pflE" /locus_tag="STM0844" /note="putative RBS for pflF; RegulonDB:STMS1H001141" regulatory complement(914692..914697) /regulatory_class="ribosome_binding_site" /gene="pflE" /locus_tag="STM0844" /note="putative RBS for pflE; RegulonDB:STMS1H001142" gene complement(914965..915727) /gene="moeB" /locus_tag="STM0845" /db_xref="GeneID:1252364" CDS complement(914965..915714) /gene="moeB" /locus_tag="STM0845" /note="molybdopterin biosynthesis MOEB protein. (SW:MOEB_SALTY)" /codon_start=1 /transl_table=11 /product="molybdopterin-synthase adenylyltransferase MoeB" /protein_id="NP_459822.1" /db_xref="GI:16764207" /db_xref="GeneID:1252364" /translation="MAELSDQEMLRYNRQIILRGFDFEGQEALKDARVLVVGLGGLGC AATQYLAGAGVGQLTLLDFDTVSVSNLQRQTLHSDATVGQPKVESARDALARINPHIT ITPVNARLDDDAMTSLIAGHSLVLDCTDNVSVRNQLNAGCYTAKVPLISGAAIRMEGQ VTVFTYRENEPCYRCLSRLFGENALTCVEAGVMAPLIGVIGSLQAMEAIKLLAHYGQP ASGKIVMYDAMTCQFREMKLMRNPGCEVCGQ" gene complement(915714..916962) /gene="moeA" /locus_tag="STM0846" /db_xref="GeneID:1252365" CDS complement(915714..916955) /gene="moeA" /locus_tag="STM0846" /note="molybdopterin biosynthesis MEOA protein. (SW:MOEA_SALTY)" /codon_start=1 /transl_table=11 /product="molybdopterin biosynthesis protein" /protein_id="NP_459823.3" /db_xref="GI:1109557599" /db_xref="GeneID:1252365" /translation="MFMEFSAGLMPLETALTQMLSRITPLTAVETLPLVNCFGRILAT DIVSPLDVPGFDNSAMDGYAVRVADLSADKPLPVAGKAFAGQPYQGEWPAGTCIRIMT GAPVPAGCEAVVMQEQTEQTDDGVRFTADVRCGQNIRRRGEDIRQDAVVFPAGTRLTT AELPVLASLGIADAQVVRKVRVALFSTGDELQLPGQPLEAGQIYDTNRLTIHLMLQQL GCEVINLGIIPDDPGKLRAAFIDADSQADVVISSGGVSVGEADYTKTILEELGEIAFW KLAIKPGKPFAFGKLSNSWFCGLPGNPVSAALTFYQLVQPLLAKLGGNTASAVPPRQR VRTASRLKKTPGRLDFQRGILQRSANGELEVTTTGHQGSHIFSSFSLGNCFIVLERER GNVEPGEWVEVEPFNALFGGL" regulatory complement(915722..915727) /regulatory_class="ribosome_binding_site" /gene="moeB" /locus_tag="STM0845" /note="putative RBS for moeB; RegulonDB:STMS1H001143" regulatory complement(916957..916962) /regulatory_class="ribosome_binding_site" /gene="moeA" /locus_tag="STM0846" /note="putative RBS for moeA; RegulonDB:STMS1H001144" gene 917139..918093 /gene="ybiK" /locus_tag="STM0847" /db_xref="GeneID:1252366" regulatory 917139..917144 /regulatory_class="ribosome_binding_site" /gene="ybiK" /locus_tag="STM0847" /note="putative RBS for ybiK; RegulonDB:STMS1H001145" CDS 917152..918093 /gene="ybiK" /locus_tag="STM0847" /EC_number="3.5.1.1" /note="similar to E. coli putative asparaginase (AAC73915.1); Blastp hit to AAC73915.1 (321 aa), 88% identity in aa 1 - 313" /codon_start=1 /transl_table=11 /product="beta-aspartyl-peptidase" /protein_id="NP_459824.1" /db_xref="GI:16764209" /db_xref="GeneID:1252366" /translation="MNKAVIAIHGGAGAIARAQMSHEQELRYIQALSEIVESGQKMLE AGDSALDVVTEAVRLLEACPLFNAGIGAVYTRDGTHELDACVMDGNTLKAGAVAGVSH VRHPVLAARLVMERSPHVLMVGEGAENFAFSQGMARVSPDIFSTPARYEQLLAARAAG EMALDHSGAPLDETKKMGTVGAVARDKFGNLAAATSTGGMTNKLPGRVGDSPLVGAGC YANNASVAVSCTGTGEVFIRTLAAYDIAALMEYGGLSLADACERVVMEKLPALGGSGG LIAVDHEGNVALPFNSEGMYRAWGYAGDTPTTGIYRE" gene 918092..919975 /gene="yliA" /locus_tag="STM0848" /db_xref="GeneID:1252367" regulatory 918092..918097 /regulatory_class="ribosome_binding_site" /gene="yliA" /locus_tag="STM0848" /note="putative RBS for yliA; RegulonDB:STMS1H001146" CDS 918104..919975 /gene="yliA" /locus_tag="STM0848" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73916.1); Blastp hit to AAC73916.1 (612 aa), 84% identity in aa 1 - 611" /codon_start=1 /transl_table=11 /product="glutathione ABC transporter ATP-binding protein GsiA" /protein_id="NP_459825.1" /db_xref="GI:16764210" /db_xref="GeneID:1252367" /translation="MPHSDELDSRDVLSVSGLNIAFHHEGQQVDAVRNVSLRLKRGET LAIVGESGSGKSVTALALMRLIEQSGANVRCGEMLLRRRNRQVIELSEQSDAQMRRVR GADIAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASHEEALAEAKRMLDQVRIPESQA ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQQEM SMGVIFITHDMGVVADIADRVLVMYQGEAVETGSVEQIFHAPTHPYTQTLLAAVPQLG AMRGHSLPRRFPLISADEPALYESQIEQDTVVEGEPILQVRGLVTRFPLRSGLFNRVT REVHAVENISFDLWPGETLSLVGESGSGKSTTGRALLRLVESRQGEIIFNGQRIDTLS AGKLQPLRRDIQCIFQDPYASLDPRQTVGYSIMEPLRIHGLGQGDAAAKRVAWLLERV GLRPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSVRGQIINLLLD LQREMGIAYLFISHDMAVVERISHRVAVMYLGQIVEMGPRRAVFENPQHPYTRKLMAA VPVADPSRHRPRRVLLSDDIPSNIHKRGEETPAVSLQLVGPGHYVARPLQDNALSRL" gene 919996..921546 /gene="yliB" /locus_tag="STM0849" /db_xref="GeneID:1252368" regulatory 919996..920001 /regulatory_class="ribosome_binding_site" /gene="yliB" /locus_tag="STM0849" /note="putative RBS for yliB; RegulonDB:STMS1H001147" CDS 920008..921546 /gene="yliB" /locus_tag="STM0849" /note="similar to E. coli putative transport protein (AAC73917.1); Blastp hit to AAC73917.1 (512 aa), 88% identity in aa 1 - 512" /codon_start=1 /transl_table=11 /product="glutathione ABC transporter substrate-binding protein GsiB" /protein_id="NP_459826.1" /db_xref="GI:16764211" /db_xref="GeneID:1252368" /translation="MTQFITHKWLAALGLASSIAAFPALAAKDVVVAVGSNFTTLDPY DANDTLSQAVAKSFYQGLFGLDKDMKVKNVLAEGYTVSDDGLTYTITLRQGVKFQDGA DFNAAAVKANLDRASNPDNHLKRYNLYKNIAKTEVVDPATVKITLKQPFSAFINILAH PATAMISPQALEKYGKDIGFHPVGTGPYQLETWNQTDFVKVKKFAGYWQQGLPKLDSI TWRPVTDNNTRAAMLQTGEAQFAFPIPYEQAALLAKNKNLELVASPSIMQRYISMNVT QKPFDNPKVREALNYAINRQALVKVAFAGYATPATGVVPPSIAYAQSYQPWPYDPAKA RELLKEAGYPDGFSTTLWSSHNHSTAQKVLQFTQQQLAQIGVKARITAMDAGQRAAEV EGKGQKESGVRMFYTGWSASTGEADWALSPLFASQNWPPTQFNTAFYSNKQVDSDLAA ALKTNDPQEKTRLYKEAQDIIWKESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFSFDD ADLK" gene 921595..922527 /gene="yliC" /locus_tag="STM0850" /db_xref="GeneID:1252369" regulatory 921595..921600 /regulatory_class="ribosome_binding_site" /gene="yliC" /locus_tag="STM0850" /note="putative RBS for yliC; RegulonDB:STMS1H001148" CDS 921607..922527 /gene="yliC" /locus_tag="STM0850" /note="similar to E. coli putative transport system permease protein (AAC73918.1); Blastp hit to AAC73918.1 (306 aa), 90% identity in aa 1 - 306" /codon_start=1 /transl_table=11 /product="glutathione ABC transporter permease GsiC" /protein_id="NP_459827.1" /db_xref="GI:16764212" /db_xref="GeneID:1252369" /translation="MLNYVLKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLIAGPEAD AQVIALVRQQLGLDQPLHVQFWHYITHVLQGDFGTSMVSRRPVSEEIASRFLPTLWLT ITSMIWAVLFGMAIGIAAAVWRNRWPDRLGMTLAVTGISFPAFALGMLLMQIFSVDLG WLPTVGADSWQHYILPSLTLGAAVASVMARFTRSSFVDVLSEDYMRTARAKGVSETWV VLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVDMRDYPVIQA EVLLFSLEFILINLVVDVLYAAINPAIRYK" gene 922515..923441 /gene="yliD" /locus_tag="STM0851" /db_xref="GeneID:1252370" regulatory 922515..922520 /regulatory_class="ribosome_binding_site" /gene="yliD" /locus_tag="STM0851" /note="putative RBS for yliD; RegulonDB:STMS1H001149" CDS 922530..923441 /gene="yliD" /locus_tag="STM0851" /note="similar to E. coli putative transport system permease protein (AAC73919.1); Blastp hit to AAC73919.1 (303 aa), 91% identity in aa 1 - 303" /codon_start=1 /transl_table=11 /product="glutathione ABC transporter permease GsiD" /protein_id="NP_459828.1" /db_xref="GI:16764213" /db_xref="GeneID:1252370" /translation="MRLFNWRRQAILHAMPVVKPDQIRTPWREFWRRFRRQHVALVAG GFVLALILVAIFARWLTPYDAENYFDYDSLNNGPSLQHWFGVDSLGRDIFSRVLVGAQ ISLAAGVFAVFIGAIIGTVLGLLAGYYEGWWDRFIMRICDVLFAFPGILLAIAVVAVL GSGIANVIVAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDTTILFSHILPGT VSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHVALFPA VAIFLTVLAFNLLGDGLRDALDPKIKG" gene complement(923532..924857) /gene="yliG" /locus_tag="STM0852" /db_xref="GeneID:1252371" CDS complement(923532..924857) /gene="yliG" /locus_tag="STM0852" /note="similar to E. coli orf, hypothetical protein (AAC73922.1); Blastp hit to AAC73922.1 (441 aa), 97% identity in aa 1 - 441" /codon_start=1 /transl_table=11 /product="ribosomal protein S12 methylthiotransferase" /protein_id="NP_459829.1" /db_xref="GI:16764214" /db_xref="GeneID:1252371" /translation="MSNVTHQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDD ADMVIVNTCGFIDSAVQESLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITG PHSYEQVLQHVHHYVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIP SMRGDLVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTS MVSLCEQLSKLGVWTRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMK RPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCF KYSPVEGAGANELPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVDE EGAIGRSMADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV" gene 925072..925471 /gene="yliH" /locus_tag="STM0853" /db_xref="GeneID:1252372" regulatory 925072..925077 /regulatory_class="ribosome_binding_site" /gene="yliH" /locus_tag="STM0853" /note="putative RBS for yliH; RegulonDB:STMS1H001150" CDS 925088..925471 /gene="yliH" /locus_tag="STM0853" /note="similar to E. coli putative receptor (AAC73923.1); Blastp hit to AAC73923.1 (127 aa), 78% identity in aa 1 - 124" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_459830.1" /db_xref="GI:16764215" /db_xref="GeneID:1252372" /translation="MVVDRLRTDLLNKLINARIDLAAYLQLRKAKGYMSVSESDTLRD NFFELNRELHDHALRQGLHLDQEEWNALRRAEGALAAAAVCLMSGHHDCPTFIAVNAD KLENCLTTLTLSIQSLKAHSPLTQV" gene 926180..926699 /locus_tag="STM0854" /db_xref="GeneID:1252373" regulatory 926180..926185 /regulatory_class="ribosome_binding_site" /locus_tag="STM0854" /note="putative RBS for STM0854; RegulonDB:STMS1H001151" CDS 926184..926699 /locus_tag="STM0854" /codon_start=1 /transl_table=11 /product="CoA ester lyase" /protein_id="NP_459831.1" /db_xref="GI:16764216" /db_xref="GeneID:1252373" /translation="MQTLERFFLFVTGDQPERFEKANSSCADSVILDLENAVSSEKKI IARENALNFMSNDEKVLIAVRAKIVITSRLAGSYPSVDGITTEFMKNELTIQNAIHSC KMGFSGKVCIHPPQISHVNRAFSYLKQEIEWVPQIMRLAQYPHGAFSHEGQMVDKPLL EKAKRILAHSI" gene 926613..927471 /locus_tag="STM0855" /db_xref="GeneID:1252374" regulatory 926613..926618 /regulatory_class="ribosome_binding_site" /locus_tag="STM0854" /note="putative RBS for STM0855; RegulonDB:STMS1H001152" CDS 926617..927471 /locus_tag="STM0855" /note="similar to E. coli probable flavoprotein subunit, carnitine metabolism (AAC73152.1); Blastp hit to AAC73152.1 (268 aa), 27% identity in aa 13 - 248" /codon_start=1 /transl_table=11 /product="putative electron transfer flavoprotein beta subunit" /protein_id="NP_459832.3" /db_xref="GI:1109557600" /db_xref="GeneID:1252374" /translation="MERSVMKGKWWINRYWKKQKGFWLIAFSKYMKESPMKALVCVKQ VVDHNVRIRIKRDHSDVDISDSKLSINPFDEIAVEEAVRLKERGLISEVVVVSIGNTG VGDVLRTALAAGADRAIHILTKNSLTPLIVAKTITAITRNEKPDIILLGKQAIDDDCN QVGQMLAALLDLPQATNVSEITISDNSLTAVREVDGGLETLNLSLPAVLTTDLRLNTP RNISLPNVIKAKKKPVKEIDFDSLGINPSSRLTIIKVDEPARRKAGIIVPDINTLLDK LKNEEKVI" gene 927475..928429 /locus_tag="STM0856" /db_xref="GeneID:1252375" regulatory 927475..927480 /regulatory_class="ribosome_binding_site" /locus_tag="STM0856" /note="putative RBS for STM0856; RegulonDB:STMS1H001153" CDS 927482..928429 /locus_tag="STM0856" /note="similar to E. coli putative flavoprotein (AAC74768.1); Blastp hit to AAC74768.1 (312 aa), 35% identity in aa 65 - 310" /codon_start=1 /transl_table=11 /product="electron transfer flavoprotein subunit alpha" /protein_id="NP_459833.1" /db_xref="GI:16764218" /db_xref="GeneID:1252375" /translation="MASLVIAEHNGNTLLPSTLSTITAAKAINSDIDILMLGYGIESI AVKASHIQGISTVFVADSPLFEHLLAENVEKQISYFLNSGKNHYQSILFPASSFGKNC APRLAAKLDVSQISDITRVIDQHTFERPIYAGNAIATVHSDDEYKVITVRPTSFAAAV AEDEGKAPIEFTEVVLGSDQVKFISQHVNKSNRPDLQSARVVVSGGRGVGSAQAFKEL VDNLADKLGAAVGASRAAVDAGYAPNDYQIGQTGKIVAPQLYIALGISGAIQHLAGMK ESGVIVAINKDPDAPIFSIADYGLVADIFKAVPELIDKL" gene 928716..929886 /locus_tag="STM0857" /db_xref="GeneID:1252376" regulatory 928716..928721 /regulatory_class="ribosome_binding_site" /locus_tag="STM0857" /note="putative RBS for STM0857; RegulonDB:STMS1H001154" CDS 928723..929886 /locus_tag="STM0857" /note="similar to E. coli putative oxidoreductase (AAC74765.1); Blastp hit to AAC74765.1 (401 aa), 28% identity in aa 33 - 390" /codon_start=1 /transl_table=11 /product="putative acyl-CoA dehydrogenase" /protein_id="NP_459834.1" /db_xref="GI:16764219" /db_xref="GeneID:1252376" /translation="MKSIEKDKYQDIRDAVRSLCSEFDDKYHRKIDEAKAYPEEFVNK LTKAGWLAALIPEEFGGSGLGLTEASIIMEEINRSGGNSGACHGQMYNMNTLLRHGSD KQKEFWLPRIATGEWRLQSMGVTEPTAGTDTTRIKTTAVKREDRYVINGQKVWISRVQ HSDWMILLVRTTPLANVKRKSEGMSIFMVDIKEAMKNGMTVRPIPNMVNHETNELFFD NLEIPEENLIGEEGMGFHYILDGLNAERTLIAAECIGDGYWFMDRVTRYTCEREVFGR PIGQNQGVQFPIAEAFIAVEAANLMRFKACELFDQHLDCGAQANMAKYLAAKASWEAA NACLQFHGGYGFACEYDIERKFRETRLYQVAPISTNLILSYIAEHVLEMPRSF" gene 930328..932020 /locus_tag="STM0858" /db_xref="GeneID:1252377" regulatory 930328..930333 /regulatory_class="ribosome_binding_site" /locus_tag="STM0858" /note="putative RBS for STM0858; RegulonDB:STMS1H001155" CDS 930335..932020 /locus_tag="STM0858" /EC_number="1.5.5.1" /note="similar to E. coli flavoprotein; probably electron transport (AAC74769.1); Blastp hit to AAC74769.1 (429 aa), 27% identity in aa 29 - 363, 30% identity in aa 7 - 148" /codon_start=1 /transl_table=11 /product="electron transfer flavoprotein-ubiquinone oxidoreductase" /protein_id="NP_459835.1" /db_xref="GI:16764220" /db_xref="GeneID:1252377" /translation="MNDTLSNTQQSRETIECDVLIVGAGPAGLSAALKLKLQANDAGK ELSIIVLDKGAEPGSHILSGAVMDPRALNELIPDWQERGAPIKQPVTQDKLLLLTNEK CINLPDALIPDNFRNHGNFIVSLGNLIKWLAGQAETSGVDIYAGFSATEILYDQDTNI IGVVTGDMGRHRDGSKKEGFLSGIEILAKYTIFAEGARGSLAKELIKKFHLDTGKAPQ SFSIGIKELWEVPSDQSHPGLVIHTTGWPLDKESFGGGFLYHLNDNKIALGLVVGLDY SNPWLSPFQEMQRLKTHPSIRKYIDRGKRIGYGARAINNGGIASMPDPCLPGGLLIGC NAGTLNASRIKGIHTAIKSGMIAADAIFNALLDNRKNDILTEYQTLLRQSWLWQELEN GSNFKPWFKKGRVIGFIMTGIEHWLLPRMGIKKIPWRVKNNRPDNITLQPANKSQKKL YDKPDGKLTFDILSSVYLSNTWHDDDQPVHLKISDQNIPISINLDIYGGPEERYCPAG VYEFLQDSETQNMRLQINSQNCIHCKVCDIKDPKQNITWTTPEGGNGPNYTGM" gene complement(932026..932916) /locus_tag="STM0859" /db_xref="GeneID:1252378" CDS complement(932026..932916) /locus_tag="STM0859" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC74667.1); Blastp hit to AAC74667.1 (297 aa), 28% identity in aa 1 - 264" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_459836.1" /db_xref="GI:16764221" /db_xref="GeneID:1252378" /translation="MHFDIKDLKLFLAISEEGSITRGAEKTYMSAASGSVRIRNLEQS INLRLLYRSSKGITLSSAGETFKHHASLIVNQMEMLRSDMQEHVKGIKGHVRIFSSIT AIAEYLPPLLSHFLTLYNDVNIDLREYPSPEIVRSVIEGKTDLGIVAGNITTDNLEIL PFRTDRLVLITATDHPFADRKSVTFHELIQYEQISLPEGTGMFEFIRKKAELVPSKLK IRIQVGNFETFCRMVEAKVGIGIMPHSAASRLRQLHEFSIIDLDEFWSLRKLQICARS FDKLPGFTQKLVTMLTAQTE" gene complement(933181..933609) /locus_tag="STM0860" /db_xref="GeneID:1252379" CDS complement(933181..933606) /locus_tag="STM0860" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459837.1" /db_xref="GI:16764222" /db_xref="GeneID:1252379" /translation="MYSLLMLVAYRGYSVILFAPLVALGAVLFTRPVTVAPVFSDIFM DKLIGFVKLYFPVFLLGAVFGKLIELAGFYYSIVSAVTCMVGQNKAMPMIILVCALLT YGGVSLFVVAFANLFFTWLIPHIYGDQFMINLPGLKKPL" regulatory complement(933604..933609) /regulatory_class="ribosome_binding_site" /locus_tag="STM0860" /note="putative RBS for STM0860; RegulonDB:STMS1H001156" gene 933942..934633 /gene="yliI" /locus_tag="STM0861" /db_xref="GeneID:1252380" regulatory 933942..933947 /regulatory_class="ribosome_binding_site" /gene="yliI" /locus_tag="STM0861" /note="putative RBS for yliI; RegulonDB:STMS1H001157" CDS 933953..934633 /gene="yliI" /locus_tag="STM0861" /note="similar to E. coli putative dehydrogenase (AAC73924.1); Blastp hit to AAC73924.1 (371 aa), 75% identity in aa 197 - 369" /codon_start=1 /transl_table=11 /product="putative dehydrogenase" /protein_id="NP_447297.1" /db_xref="GI:1109557601" /db_xref="GeneID:1252380" /translation="MAKVDVKCPFCAQTASVKKYGPGSAGHQHYRCQVCCRSFQVDYE YRACQPGMKEQVVDLAMYTAGIRNPQGLAINPWSGALWLHEHGPRGGDEINIPEKGKN YGWPLATWGVNYSGLKVPEAKGEIVEGTAQPVYYWKDSPAISGMAFYASDVFAPWRHK LFIGALKDKEVIVMRVDGNTVTEEGRILGDRKQRIYDVRVGPDGYLYVLTDESDGQLL KVSPAATR" gene complement(934630..935267) /gene="yliJ" /locus_tag="STM0862" /db_xref="GeneID:1252381" CDS complement(934630..935256) /gene="yliJ" /locus_tag="STM0862" /note="similar to E. coli putative transferase (AAC73925.1); Blastp hit to AAC73925.1 (210 aa), 82% identity in aa 3 - 210" /codon_start=1 /transl_table=11 /product="putative glutathione S-transferase" /protein_id="NP_459839.1" /db_xref="GI:16764224" /db_xref="GeneID:1252381" /translation="MITLWGRNNSTNVKKVLWTLEELELPYDQILAGGKFGVNQDADY LAMNPNGLVPLLKDDETDLLLWESNAIVRYLAAQYGQNRLWVDNPARRAEGEKWMDWA NQTLSPAHRVILMGLVRTPPEKRDQAAIEAGIEKCDSLFALLDDALAHQPWFSGDNFG TGDIAIAPFVYNLLNVGLKWTPRPNLERWYQQLTERPAFRKVVMIPVT" regulatory complement(935262..935267) /regulatory_class="ribosome_binding_site" /gene="yliJ" /locus_tag="STM0862" /note="putative RBS for yliJ; RegulonDB:STMS1H001158" gene 935480..936702 /gene="dacC" /locus_tag="STM0863" /db_xref="GeneID:1252382" regulatory 935480..935485 /regulatory_class="ribosome_binding_site" /gene="dacC" /locus_tag="STM0863" /note="putative RBS for dacC; RegulonDB:STMS1H001159" CDS 935500..936702 /gene="dacC" /locus_tag="STM0863" /EC_number="3.4.16.4" /note="similar to E. coli D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 (AAC73926.1); Blastp hit to AAC73926.1 (400 aa), 92% identity in aa 1 - 400" /codon_start=1 /transl_table=11 /product="serine-type D-Ala-D-Ala carboxypeptidase" /protein_id="NP_459840.1" /db_xref="GI:16764225" /db_xref="GeneID:1252382" /translation="MTQYASSLRSLAAGSVLLFLFASPVKAEEQTIAPPGVDARAWIL MDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGN PALRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAK RLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQP NRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEK LLTWGFRFFETVTPIKPDATFVTQRVWFGDKHEVNLGAGDAGSVTIPRGQLKNLKASF TLNEPQLTAPLKKGQVVGTIDFQLNGKSIEQRPLMVMENVEEGGFFSRMWDFVLMKLH QWFGSWFS" gene complement(936747..937515) /gene="deoR" /locus_tag="STM0864" /db_xref="GeneID:1252383" CDS complement(936747..937505) /gene="deoR" /locus_tag="STM0864" /note="similar to E. coli transcriptional repressor for deo operon, tsx, nupG (AAC73927.1); Blastp hit to AAC73927.1 (252 aa), 83% identity in aa 1 - 252" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional repressor DeoR" /protein_id="NP_459841.1" /db_xref="GI:16764226" /db_xref="GeneID:1252383" /translation="METRRDERIGQLLQALKRSDKLHLKEAATLLGVSEMTIRRDLNH KSAPVVLLGGYIVLEPRSASHYLLSDQKSRLVEEKRRAAQLAAGLVQAHQTVFIDCGT TTPWIIEAIDNDLPFTAVCYSLNTFLALQDKPHCRAILSGGEFHASNAIFKPLDFHET LNNICPDIAFYSAAGVHTSKGATCFNLEELPVKHWAMTMAQCHVLVVDHSKFGKVRPA RMGELSRFDTIISDRRPDEAFVAYAKAQQITLMY" regulatory complement(937510..937515) /regulatory_class="ribosome_binding_site" /gene="deoR" /locus_tag="STM0864" /note="putative RBS for deoR; RegulonDB:STMS1H001160" gene complement(937577..938194) /gene="ybjG" /locus_tag="STM0865" /db_xref="GeneID:1252384" CDS complement(937577..938185) /gene="ybjG" /locus_tag="STM0865" /note="similar to E. coli orf, hypothetical protein (AAC73928.1); Blastp hit to AAC73928.1 (198 aa), 78% identity in aa 1 - 198" /codon_start=1 /transl_table=11 /product="undecaprenyl-diphosphate phosphatase" /protein_id="NP_459842.1" /db_xref="GI:16764227" /db_xref="GeneID:1252384" /translation="MLENLNNSLFYFINATPDSAQWIISLAIFIAKDVINIVPLLAVV LWLWGPRDRVCAQRQLIVKIGIALIISLAVSWTMGHLFPHDRPFVDHIGYNFLHHAAD DSFPSDHGTVIFTFALAFLFWHRLWSGIVMMAIAITIAWSRVYLGVHWPLDMIGALLV AMLGCLSAQLIWQWYGAPLYQALQRCYRFCFALPIRKGWVRD" regulatory complement(938189..938194) /regulatory_class="ribosome_binding_site" /gene="ybjG" /locus_tag="STM0865" /note="putative RBS for ybjG; RegulonDB:STMS1H001161" gene 938490..939730 /gene="mdfA" /locus_tag="STM0866" /db_xref="GeneID:1252385" regulatory 938490..938495 /regulatory_class="ribosome_binding_site" /gene="mdfA" /locus_tag="STM0866" /note="putative RBS for mdfA; RegulonDB:STMS1H001162" CDS 938498..939730 /gene="mdfA" /locus_tag="STM0866" /note="similar to E. coli proton motive force efflux pump (AAC73929.1); Blastp hit to AAC73929.1 (410 aa), 90% identity in aa 1 - 406" /codon_start=1 /transl_table=11 /product="multidrug transporter MdfA" /protein_id="NP_459843.1" /db_xref="GI:16764228" /db_xref="GeneID:1252385" /translation="MQNRLQSGGRLGRQALLFPLCLVLYEFSTYIGNDMIQPGMLAVV EQYQAGLDWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVVWFIVTCLATLLA KNIEQFTFLRFLQGISLCFIGAVGYAAIQESFEEAVCIKITALMANVALIAPLLGPLV GAAWVHVLPWEGMFILFAALAAIAFFGLQRAMTETATRRGETLSFKALGRDYRLVIKN RRFVAGALALGFVSLPLLAWIAQSPIIIISGEQLSSYEYGLLQVPVFGALIAGNLVLA RLTSRRTVRSLIVMGGWPIVAGLIIAAAATVVSSHAYLWMTAGLSVYAFGIGLANAGL VRLTLFSSDMSKGTVSAAMGMLQMLIFTVGIEVSKHAWLSGGNGLFSLFNLANGILWL LLMLVFLKDKRTGNLQTV" gene complement(939784..940613) /locus_tag="STM0867" /db_xref="GeneID:1252386" CDS complement(939784..940599) /locus_tag="STM0867" /note="similar to E. coli orf, hypothetical protein (AAC73931.1); Blastp hit to AAC73931.1 (262 aa), 82% identity in aa 1 - 261" /codon_start=1 /transl_table=11 /product="sugar-phosphatase" /protein_id="NP_459844.1" /db_xref="GI:16764229" /db_xref="GeneID:1252386" /translation="MSIKLIAVDMDGTFLSDQKTYNRDRFMAQYQQMKRQGIRFVVAS GNQYYQLISFFPEIAHEIAFVAENGGWVVSEGEDIFNGELTKADFQAVVEHLLTRADV EIIACGKNSAYTLKRYDDALKAVAAMYYHRLEFVDNFNNINDVFFKFGLNITDERIPE VQAALHDAIGDIMVPVHTGYGSIDLIIPGVHKANGLRLLQQRWGIHDSEVVVFGDGGN DIEMLRQAGFSFAMSHASEAVAAAAKYRAGSNNQEGVLDIIDSVLNNEPPFNV" gene complement(940596..941820) /locus_tag="STM0868" /db_xref="GeneID:1252387" CDS complement(940596..941807) /locus_tag="STM0868" /note="similar to E. coli putative DEOR-type transcriptional regulator (AAC73932.1); Blastp hit to AAC73932.1 (402 aa), 87% identity in aa 1 - 402" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459845.1" /db_xref="GI:16764230" /db_xref="GeneID:1252387" /translation="MTVLSSRNALKRRTWALFMFFFLPGLLMASWATRTPAIRDILSV STAEMGAVLFGLSIGSMSGILCSAWLVKRFGTRKVIRTTMTCAVTGMVILSVALWCAS PLIFALGLAVFGASFGAAEVAINVEGAAVERELNKTVLPMMHGFYSFGTLAGAGVGMA LTALSVPANIHIILAAAVAIAPIFIAIRAIPDGTGKNASEDSHLQEKGLPFYRDIQLL LIGVVVLAMAFAEGSANDWLPLLMVDGHGFSPTSGSLIYAGFTLGMTVGRFTGGWFID RYSRVTVVRASALMGALGIGLIIFVDSDWVAGVSVILWGLGASLGFPLTISAASDTGP DAPTRVSVVATTGYLAFLVGPPLLGYLGEHYGLRSAMMVVLALVILAALVAKAVAKPV STPQPVMEHNA" regulatory complement(940608..940613) /regulatory_class="ribosome_binding_site" /locus_tag="STM0867" /note="putative RBS for STM0867; RegulonDB:STMS1H001163" regulatory complement(941815..941820) /regulatory_class="ribosome_binding_site" /locus_tag="STM0868" /note="putative RBS for STM0868; RegulonDB:STMS1H001164" gene 941963..942595 /locus_tag="STM0869" /db_xref="GeneID:1252388" regulatory 941963..941968 /regulatory_class="ribosome_binding_site" /locus_tag="STM0869" /note="putative RBS for STM0869; RegulonDB:STMS1H001165" CDS 941975..942595 /locus_tag="STM0869" /note="similar to E. coli putative DEOR-type transcriptional regulator (AAC73933.1); Blastp hit to AAC73933.1 (178 aa), 78% identity in aa 1 - 178" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator" /protein_id="NP_459846.1" /db_xref="GI:16764231" /db_xref="GeneID:1252388" /translation="MKENAVRRANDPKRREKIIQATLEAVKTYGVHAVTHRKIAAIAQ VPLGSMTYYFAGMDALLSEAFTLFTENMSRQYQDFFAQVTDAEGACQAITEMIYGSQV TTPDNMALMYQLYAYASDKPALKIVMQNWMQRSQNTLAQWFDAQTARALDAFIEGMTL HFVTDRTPLAREAILQMVKRIAGVSMSCHSALGNKKPTNLEPKWRG" gene complement(942712..944412) /locus_tag="STM0870" /db_xref="GeneID:1252389" CDS complement(942712..944397) /locus_tag="STM0870" /note="similar to E. coli putative transport protein (AAC73934.1); Blastp hit to AAC73934.1 (561 aa), 96% identity in aa 1 - 561" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_459847.1" /db_xref="GI:16764232" /db_xref="GeneID:1252389" /translation="MNINVADLLNGNYILLLFVVLALGLCLGKLRLGSVQLGNSIGVL VVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGS ALLIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGIASTQLSSALDNLS LGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAY RVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYP DAHARLDPSFRNGKEVFDRDLLDMRIVTEEIVVKNHNAVGRRLAQLKLTDHGCFLNRV IRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFII GLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLM VFMAGVGLSAGSGISNGLGAVGGQMLIAGLVVSLVPVVICFLFGAYVLRMNRALLFGA MMGARTCAPAMEIISDTARSNIPALGYAGTYAIANVLLTLAGTLIVIIWPGLG" regulatory complement(944407..944412) /regulatory_class="ribosome_binding_site" /locus_tag="STM0870" /note="putative RBS for STM0870; RegulonDB:STMS1H001166" gene 944656..945045 /gene="ybjM" /locus_tag="STM0871" /db_xref="GeneID:1252390" regulatory 944656..944661 /regulatory_class="ribosome_binding_site" /gene="ybjM" /locus_tag="STM0871" /note="putative RBS for ybjM; RegulonDB:STMS1H001167" CDS 944668..945045 /gene="ybjM" /locus_tag="STM0871" /note="similar to E. coli orf, hypothetical protein (AAC73935.1); Blastp hit to AAC73935.1 (125 aa), 72% identity in aa 1 - 125" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459848.1" /db_xref="GI:16764233" /db_xref="GeneID:1252390" /translation="MKHKHGWASVVCCFVLFIVVCLSLTMHVQGAFRAAGHPEIGLLF FTLPGAVASFCSHRREVIRPLIGAMLAAPFCLVLMRVVFMPTRSFWQELAWLFSAVFW CALGALCYLFISSLFSHRRKKRR" gene complement(945077..945350) /gene="grxA" /locus_tag="STM0872" /db_xref="GeneID:1252391" CDS complement(945077..945340) /gene="grxA" /locus_tag="STM0872" /note="glutaredoxin 1 (GRX1). (SW:GRX1_SALTY)" /codon_start=1 /transl_table=11 /product="glutaredoxin" /protein_id="NP_459849.1" /db_xref="GI:16764234" /db_xref="GeneID:1252391" /translation="MFTVIFGRPGCPYCVRAKELAEKLSKERDDFNYRYIDIHAEGIT KADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAWAKENLNLFA" regulatory complement(945345..945350) /regulatory_class="ribosome_binding_site" /gene="grxA" /locus_tag="STM0872" /note="putative RBS for grxA; RegulonDB:STMS1H001168" gene 945500..945800 /gene="ybjC" /locus_tag="STM0873" /db_xref="GeneID:1252392" regulatory 945500..945505 /regulatory_class="ribosome_binding_site" /gene="ybjC" /locus_tag="STM0873" /note="putative RBS for ybjC; RegulonDB:STMS1H001169" CDS 945510..945800 /gene="ybjC" /locus_tag="STM0873" /note="similar to E. coli orf, hypothetical protein (AAC73937.1); Blastp hit to AAC73937.1 (95 aa), 59% identity in aa 1 - 95" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459850.1" /db_xref="GI:16764235" /db_xref="GeneID:1252392" /translation="MRTIGVLPKSVLILEYLGMILLALALLSLNHYLTLPAPFNTPLA GVLMVFLGVVLILPAAVAMMWRIAQLLAPQLMKRPPDISSRSDREKHNESDH" gene 945772..946506 /gene="mdaA" /locus_tag="STM0874" /db_xref="GeneID:1252393" regulatory 945772..945777 /regulatory_class="ribosome_binding_site" /gene="ybjC" /locus_tag="STM0873" /note="putative RBS for mdaA; RegulonDB:STMS1H001170" CDS 945784..946506 /gene="mdaA" /locus_tag="STM0874" /EC_number="1.-.-.-" /note="oxygen-insensitive NADPH nitroreductase. (SW:NFSA_SALTY)" /codon_start=1 /transl_table=11 /product="nitroreductase A" /protein_id="NP_459851.1" /db_xref="GI:16764236" /db_xref="GeneID:1252393" /translation="MSPTIELLCGHRSIRHFTDEPVTDAQREAIIAAARSTSSSSFLQ CSSIIRITDRALREALVPLTGGQKHVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLL LGVVDTAMMGQNALTAAESLGLGGVYIGGIRNNIESVTELLKLPKHVLPLFGLCLGWP ADNPDLKPRLPAELVVHENQYQPLDEKLLARYDEQLAEYYLTRGSNTRRDTWSDHIRR TLIKENRPFILEYLHKQGWATR" gene 946554..947466 /gene="rimK" /locus_tag="STM0875" /db_xref="GeneID:1252394" regulatory 946554..946559 /regulatory_class="ribosome_binding_site" /gene="rimK" /locus_tag="STM0875" /note="putative RBS for rimK; RegulonDB:STMS1H001171" CDS 946564..947466 /gene="rimK" /locus_tag="STM0875" /note="ribosomal protein S6 modification protein. (SW:RIMK_SALTY)" /codon_start=1 /transl_table=11 /product="ribosomal protein S6 modification protein" /protein_id="NP_459852.1" /db_xref="GI:16764237" /db_xref="GeneID:1252394" /translation="MKIAILSRDGTLYSCKRLREAAMRRGHLVEILDPLSCYMNINPA ASSIHYKGRRLPHFDAVIPRIGSAITFYGTAALRQFELLGSYPLNESVAITRARDKLR SLQLLARQGIDLPITGIAHSPDDTSDLIKMVGGAPLVVKLVEGTQGIGVVLAETRQAA ESVIDAFRGLNAHILVQEYIAEAKGCDIRCLVVGNEVVAAIERCAKAGDFRSNLHRGG VASIATITPRERDIAIKAAQTLGLDVAGVDILRAARGPLVMEVNASPGLEGIEKTTGV DIAGRMIQWIERHATPEFCLKIGG" gene 947547..948039 /gene="ybjN" /locus_tag="STM0876" /db_xref="GeneID:1252395" regulatory 947547..947552 /regulatory_class="ribosome_binding_site" /gene="ybjN" /locus_tag="STM0876" /note="putative RBS for ybjN; RegulonDB:STMS1H001172" CDS 947563..948039 /gene="ybjN" /locus_tag="STM0876" /note="similar to E. coli putative sensory transduction regulator (AAC73940.1); Blastp hit to AAC73940.1 (158 aa), 84% identity in aa 1 - 158" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459853.1" /db_xref="GI:16764238" /db_xref="GeneID:1252395" /translation="MISLVVPTLDTLRQWLDDLGMNFFECDTCQALHLPHMQNFDGVY DAKIDLVDNTVLFSAMAEVRPSALLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVC QSLSVMQGVTYEQFEWFVRQSEEQISMVILEAGAHQLLFNAEEDAQKTSAVDHFLH" gene 948375..949500 /gene="potF" /locus_tag="STM0877" /db_xref="GeneID:1252396" regulatory 948375..948380 /regulatory_class="ribosome_binding_site" /gene="potF" /locus_tag="STM0877" /note="putative RBS for potF; RegulonDB:STMS1H001173" CDS 948388..949500 /gene="potF" /locus_tag="STM0877" /note="similar to E. coli periplasmic putrescine-binding protein; permease protein (AAC73941.1); Blastp hit to AAC73941.1 (370 aa), 94% identity in aa 1 - 370" /codon_start=1 /transl_table=11 /product="spermidine/putrescine ABC transporter substrate-binding protein PotF" /protein_id="NP_459854.1" /db_xref="GI:16764239" /db_xref="GeneID:1252396" /translation="MTALKKKWLSGLVAGALMVVSVGTLAAEQKTLHIYNWSDYIAPD TVANFEKETGINVIYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLD KSKLPGWKNLDPELLKLVAKHDPDNKYAMPYMWATTGIGYNVDKVKAVLGDDAPVNSW DLVLKPENLEKLKSCGVSFLDAPEEIFATVLNYLGKDPNSSKADDYTGPATDLLLKLR PNIRYFHSSQYINDLANGDTCVAIGWAGDVWQAANRAKEAKNGVNISFSIPKEGAMAF FDVFAMPADAKNKDEAYQFLNYLLRPDVIAHISDHVFYANANKEATALVSQQVRDNPG IYPPADVRAKLFTLKVQEPKIDRVRTRAWTKVKSGK" gene 949574..950721 /gene="potG" /locus_tag="STM0878" /db_xref="GeneID:1252397" regulatory 949574..949579 /regulatory_class="ribosome_binding_site" /gene="potG" /locus_tag="STM0878" /note="putative RBS for potG; RegulonDB:STMS1H001174" CDS 949588..950721 /gene="potG" /locus_tag="STM0878" /note="ABC superfamily (atp_bind); similar to E. coli ATP-binding component of putrescine transport system (AAC73942.1); Blastp hit to AAC73942.1 (404 aa), 93% identity in aa 28 - 404" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_459855.1" /db_xref="GI:16764240" /db_xref="GeneID:1252397" /translation="MNDVPHRPQVKTRKALTPLLEIRNLTKSFDGQHAVDDVSLTIYK GEIFALLGASGCGKSTLLRMLAGFEPPSSGQIMLDGVDLAHVPPYQRPINMMFQSYAL FPHMTVEQNIAFGLKQDKLPKAEITSRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVAL ARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAG RIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGLLKAREEDGLVIDAPGLV HPLKVDADASVVDNVPVYVALRPEKIMLCESPPADGYNFAVGEVAHIAYLGDLSIYHV RLKSGQMISAQLQNAHRYRKGLPTWGDEVRLCWEADSCVVLTV" gene 950720..951684 /gene="potH" /locus_tag="STM0879" /db_xref="GeneID:1252398" regulatory 950720..950725 /regulatory_class="ribosome_binding_site" /gene="potH" /locus_tag="STM0879" /note="putative RBS for potH; RegulonDB:STMS1H001175" CDS 950731..951684 /gene="potH" /locus_tag="STM0879" /note="ABC superfamily (membrane); similar to E. coli putrescine transport protein; permease (AAC73943.1); Blastp hit to AAC73943.1 (317 aa), 92% identity in aa 1 - 317" /codon_start=1 /transl_table=11 /product="putrescine ABC transporter permease PotH" /protein_id="NP_459856.1" /db_xref="GI:16764241" /db_xref="GeneID:1252398" /translation="MSTLEPPARISKPGGAALWLARMQMKHGRKLVIALPYIWLILLF LLPFLIVFKISLAEMARAIPPYTDLLEWADGQLSITLNLGNFLQLTDDPLYFEAYLQS LQIAGISTICCLLLGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKN NGALNNVLLWLGVIDQPLTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAS LDLGARPLKTFFSIIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQ EFFNNRDWPVASAVAIIMLLLLIVPIMWFHKHQQKSVGEHG" gene 951667..952526 /gene="potI" /locus_tag="STM0880" /db_xref="GeneID:1252399" regulatory 951667..951672 /regulatory_class="ribosome_binding_site" /gene="potI" /locus_tag="STM0880" /note="putative RBS for potI; RegulonDB:STMS1H001176" CDS 951681..952526 /gene="potI" /locus_tag="STM0880" /note="ABC superfamily (membrane); similar to E. coli putrescine transport protein; permease (AAC73944.1); Blastp hit to AAC73944.1 (281 aa), 94% identity in aa 1 - 281" /codon_start=1 /transl_table=11 /product="putrescine ABC transporter permease PotI" /protein_id="NP_459857.1" /db_xref="GI:16764242" /db_xref="GeneID:1252399" /translation="MNNLPVVRSPWRILILVLGFTFLYAPMLMLVIYSFNSSKLVTVW AGWSTRWYGELFRDTAMMSAVGLSLTIAACAATMAVVLGTIAAVVMVRFGRFRGANGF AFMITAPLVMPDVITGLSLLLLFVALGHAIGWPSDRGMLTIWLAHVTFCTAYVAVVIA SRLRELDRSIEEAAMDLGAAPLKVFFVITLPMIMPAVISGWLLAFTLSLDDLVIASFV SGPGATTLPMLVFSSVRMGVNPEINALATLILGVVGIVGFIAWYLMARAEKQRIRDIQ RARRG" gene 952585..953073 /gene="ybjO" /locus_tag="STM0881" /db_xref="GeneID:1252400" regulatory 952585..952590 /regulatory_class="ribosome_binding_site" /gene="ybjO" /locus_tag="STM0881" /note="putative RBS for ybjO; RegulonDB:STMS1H001177" CDS 952600..953073 /gene="ybjO" /locus_tag="STM0881" /note="similar to E. coli orf, hypothetical protein (AAC73945.1); Blastp hit to AAC73945.1 (162 aa), 80% identity in aa 6 - 162" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459858.1" /db_xref="GI:16764243" /db_xref="GeneID:1252400" /translation="MGFIKQSTSSHARLNVPTLVQVAAMAIILIRGLDVLMIMNTLGI RGMGEFIHRSVQTWSLTLVFLASLVLVFVEIYCAFSLVKGRSWARWVYLATQIIVSGY LWAASLGYGYPELFSIAGESKRDILHSLVMQKLPDLLILFLLFIPAPSRRFFRLQ" gene 953103..954246 /gene="ybjF" /locus_tag="STM0882" /db_xref="GeneID:1252401" regulatory 953103..953108 /regulatory_class="ribosome_binding_site" /gene="ybjF" /locus_tag="STM0882" /note="putative RBS for ybjF; RegulonDB:STMS1H001178" CDS 953116..954246 /gene="ybjF" /locus_tag="STM0882" /EC_number="2.1.1.-" /note="similar to E. coli putative enzyme (AAC73946.1); Blastp hit to AAC73946.1 (375 aa), 87% identity in aa 1 - 372" /codon_start=1 /transl_table=11 /product="23S rRNA (uracil(747)-C(5))-methyltransferase" /protein_id="NP_459859.1" /db_xref="GI:16764244" /db_xref="GeneID:1252401" /translation="MQCALYDAGRCRSCQWITQSVNEQLSAKTADLHRLLAGLPVEQW CAPIGGPEQHFRNKAKMVVSGSVEKPLFGMLHRDGTPVDLCGCPLYPASFDPVFSALK PFIARAGLTPYNVARKRGELKYLLLTESQFDGGMMLRFVLRSETKLTQLRAALPWLRA QLPQLRVITANIQPVHMAIMEGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVA SRLYATARDWVGQLPVRHMWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAA ELGLTRLHFQALDSTQFATAQGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSC NAQTMAQDIRHLPNYRIQRVQLFDMFPHTAHYEVLALLRRSI" gene 954525..955872 /locus_tag="STM0884" /db_xref="GeneID:1252402" regulatory 954525..954530 /regulatory_class="ribosome_binding_site" /locus_tag="STM0884" /note="putative RBS for STM0884; RegulonDB:STMS1H001179" CDS 954529..955872 /locus_tag="STM0884" /note="similar to E. coli orf, hypothetical protein (AAC77150.1); Blastp hit to AAC77150.1 (484 aa), 38% identity in aa 20 - 441" /codon_start=1 /transl_table=11 /product="PTS ascorbate transporter subunit IIC" /protein_id="NP_459860.1" /db_xref="GI:16764245" /db_xref="GeneID:1252402" /translation="MEGVQTMFAKFIDVIQTFLTEPAILIGILVGVGYALDKKTPIKI ITGMISAMVGLMMVLFGGFQFSATFKPVAEAVSKAYGVHGYLMDSYAMKAATQIALGD NFGYVGYVFVLAFFTNLLLVLFGRYTGAKGIFLTGNTGVSHSQAVLWLIVFWLGFGWV QSIVIAGVLTGVFWAFSTTLIVKPIAKVTNNAGFTIAHNQMLGLWFFSKFAHKFGDPE KHDAENLKLPGWLAIFNHNVTAIAIVMTLFVGGFLLATGIDNVQLMAKGKPWYIYIIN LGLQFSMYMVILLQGVRMMVGEINGSFKGWQDRFIPNAIPAVDVAALLPFSPNAATLG FVFCTFGTIFSMGILLLIHSPIMVLPGFVPLFFSGGPIGVLANRMGGYRSVIICTFLL GIIQTFGTVWAIPLTGLAKEGVGWTGIFDWATLWPAICELLKFIASTFHLGPYSI" gene 955896..956222 /locus_tag="STM0885" /db_xref="GeneID:1252403" regulatory 955896..955901 /regulatory_class="ribosome_binding_site" /locus_tag="STM0885" /note="putative RBS for STM0885; RegulonDB:STMS1H001180" CDS 955902..956222 /locus_tag="STM0885" /note="similar to E. coli orf, hypothetical protein (AAC77151.1); Blastp hit to AAC77151.1 (101 aa), 25% identity in aa 2 - 97" /codon_start=1 /transl_table=11 /product="PTS sugar transporter IIB" /protein_id="NP_459861.1" /db_xref="GI:16764246" /db_xref="GeneID:1252403" /translation="MKDSVNILFVCGYGVGSSVMLQTVVKKALAKYDFSFDMEHTAAG EVGGFTDWADIYAISKKLLDVVSLDPKHGQYLIPIENIMDGESIGKQIYDVVEKNFPH LLNK" gene 956226..957719 /locus_tag="STM0886" /db_xref="GeneID:1252404" regulatory 956226..956231 /regulatory_class="ribosome_binding_site" /locus_tag="STM0886" /note="putative RBS for STM0886; RegulonDB:STMS1H001181" CDS 956232..957719 /locus_tag="STM0886" /note="similar to E. coli putative sulfatase (AAC76701.1); Blastp hit to AAC76701.1 (497 aa), 25% identity in aa 7 - 358, 26% identity in aa 401 - 446" /codon_start=1 /transl_table=11 /product="putative sulfatase" /protein_id="NP_459862.1" /db_xref="GI:16764247" /db_xref="GeneID:1252404" /translation="MKAIILLFDSLNKNYLPPYGDLLTKAPNFQRLAAHAATFDNSYV GSMPCMPARRELHTGRYNFLHREWGPLEPFDDSMPELLKKAGIYTHLISDHLHYWEDG GGNYHNRYSSWDVVRGQEGDHWKASVGEPPIPEVLRVPQKQTGGGVSGLWRHDWANRE YIQQEADFPQTKVFDAGCDFIHKNHAEDNWLLQVETFDPHEPFYTTEEYLSLYDDEWQ GPHYDWPRGKVSESEEAIAHIRCRYRALVSMCDRNLGRILDLMDEHDLWRDTMLIVGT DHGFLLGEHGWWAKNQMPYYNEVANNPLFIWDPRSAVCGARRQSLVQMIDWAPTLLDY FQQPIPADMQGQPLAKIIASDEPVREGALFGVFSGHVNVTDGRYVYMRAAQPGREHDI ANYTLMPIKMNARYDVDELGKLSLAPPFNFTKGLQVLRIPAREKYKGVNSFGHLLFDL RDDPQQQHPIHDEAIEARMINLLIRLMKENDAPAEQYRRLGLDVV" gene complement(957938..958683) /gene="artJ" /locus_tag="STM0887" /db_xref="GeneID:1252405" CDS complement(957938..958669) /gene="artJ" /locus_tag="STM0887" /note="ABC superfamily (bind_prot); similar to E. coli arginine 3rd transport system periplasmic binding protein (AAC73947.1); Blastp hit to AAC73947.1 (243 aa), 91% identity in aa 1 - 243" /codon_start=1 /transl_table=11 /product="arginine ABC transporter substrate-binding protein" /protein_id="NP_459863.1" /db_xref="GI:16764248" /db_xref="GeneID:1252405" /translation="MKKLVLAALLASFATGSIAAEKINFGVSATYPPFESLDASNKIV GFDIDLATALCKQMQAECTFTNHAFDSLIPALKFRKYDAVISGMDITPERSKQVAFSN PYYANSALVIAKKDTYKTFTDLKGKRIGMENGTTHQKYLQDKHPEVKTVAYDSYQNAI IDLKNGRIDGVFGDTAVVNEWLKTNPQLGPATEKVTDPQYFGTGLGIAVRPDNKALLE KLNNALAAIKADGTYQKISDQWFPQ" regulatory complement(958678..958683) /regulatory_class="ribosome_binding_site" /gene="artJ" /locus_tag="STM0887" /note="putative RBS for artJ; RegulonDB:STMS1H001182" gene complement(958906..959589) /gene="artM" /locus_tag="STM0888" /db_xref="GeneID:1252406" CDS complement(958906..959574) /gene="artM" /locus_tag="STM0888" /note="ABC superfamily (membrane); similar to E. coli arginine 3rd transport system permease protein (AAC73948.1); Blastp hit to AAC73948.1 (222 aa), 94% identity in aa 1 - 222" /codon_start=1 /transl_table=11 /product="arginine transporter permease subunit ArtM" /protein_id="NP_459864.1" /db_xref="GI:16764249" /db_xref="GeneID:1252406" /translation="MLEYLPELLKGLHTSLTLTVASIAVALVLALVFTIILTLKTPFV VWLVRGYITLFTGTPLLVQIFLIYYGPGQFPTLQEYPLLWHLLSEPWLCALIALSLNS AAYTTQLFYGAIRAIPEGQWQSCSALGMSKKDTLAILLPYAFKRALSSYSNEVVLVFK STSLAYTITLMEVMGYSQLLYGRTYDVVVFGAAGVIYLVVNGLLTLMMRLIERKALAF ERRN" gene complement(959574..960305) /gene="artQ" /locus_tag="STM0889" /db_xref="GeneID:1252407" CDS complement(959574..960290) /gene="artQ" /locus_tag="STM0889" /note="ABC superfamily (membrane); similar to E. coli arginine 3rd transport system permease protein (AAC73949.1); Blastp hit to AAC73949.1 (238 aa), 94% identity in aa 1 - 237" /codon_start=1 /transl_table=11 /product="arginine transporter permease subunit ArtQ" /protein_id="NP_459865.1" /db_xref="GI:16764250" /db_xref="GeneID:1252407" /translation="MNEFFPLASAAGMTVGLAVCALIIGLALAMFFAVWESVKWRPIA WIGSALVTILRGLPEILVVLFIYFGSSQLLLTLSDGFTLHLGFTQIPVQMEIENFDVS PFLCGVIALSLLYAAYASQTLRGALKAVPSGQWESGQALGLSKTAIFFRLVMPQMWRH ALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFNWYIIAAAIYLVITLI SQYILKRIDLRATRFERRPD" regulatory complement(959584..959589) /regulatory_class="ribosome_binding_site" /gene="artM" /locus_tag="STM0888" /note="putative RBS for artM; RegulonDB:STMS1H001183" gene complement(960297..961028) /gene="artI" /locus_tag="STM0890" /db_xref="GeneID:1252408" CDS complement(960297..961028) /gene="artI" /locus_tag="STM0890" /note="ABC superfamily (bind_prot); similar to E. coli arginine 3rd transport system periplasmic binding protein (AAC73950.1); Blastp hit to AAC73950.1 (243 aa), 95% identity in aa 1 - 243" /codon_start=1 /transl_table=11 /product="arginine ABC transporter substrate-binding protein" /protein_id="NP_459866.1" /db_xref="GI:16764251" /db_xref="GeneID:1252408" /translation="MKKVLIAALIAGFSLSATAAQTIRFATEASYPPFESMDANNKIV GFDVDLANALCKEIDASCTFTNQAFDSLIPSLKFRRFDAVMAGMDITPEREKQVLFTT PYYDNSALFVGQQGKYTSVDQLKGKKVGVQNGTTHQKFIMDKHPEITTVPYDSYQNAK LDLQNGRIDAVFGDTAVVTEWLKANPKLAPVGDKVTDKDYFGTGLGIAVRQGNTELQQ KFNTALEKVKKDGTYETIYNKWFQK" regulatory complement(960300..960305) /regulatory_class="ribosome_binding_site" /gene="artQ" /locus_tag="STM0889" /note="putative RBS for artQ; RegulonDB:STMS1H001184" gene complement(961046..961774) /gene="artP" /locus_tag="STM0891" /db_xref="GeneID:1252409" CDS complement(961046..961774) /gene="artP" /locus_tag="STM0891" /note="ABC superfamily (atp&memb); similar to E. coli ATP-binding component of 3rd arginine transport system (AAC73951.1); Blastp hit to AAC73951.1 (242 aa), 95% identity in aa 1 - 242" /codon_start=1 /transl_table=11 /product="arginine ABC transporter ATP-binding protein ArtP" /protein_id="NP_459867.1" /db_xref="GI:16764252" /db_xref="GeneID:1252409" /translation="MSIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSL LRVLNLLEMPRSGTLTIAGNHFDFTKTPSDKAIRELRQNVGMVFQQYNLWPHLTVVQN LIEAPCRVLGLTKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEP QVLLFDEPTAALDPEITAQIVSIIHELAETNITQVIVTHEVEVARKTASRVIYMENGH IVEHGDAGCFAHPQTEAFKNYLSH" gene complement(962004..962531) /gene="ybjP" /locus_tag="STM0892" /db_xref="GeneID:1252410" CDS complement(962004..962519) /gene="ybjP" /locus_tag="STM0892" /note="similar to E. coli putative enzyme (AAC73952.1); Blastp hit to AAC73952.1 (171 aa), 84% identity in aa 1 - 171" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="NP_459868.1" /db_xref="GI:16764253" /db_xref="GeneID:1252410" /translation="MRYSKLSLLIPCALLLSACTTVTPAYKDNGPRIGACVEGGPDSV AQQFYDYRIQHHSNDIAALRPYLSDNLAKLLTDASRDTEHRQLMSGDLFSSRATLPDS ANVASASTIPNRDARNIPLRVALKQGDQSWQDEVLMIHEGSCWVIDDVRYLGGDVHAP AGTLRQSIENR" regulatory complement(962526..962531) /regulatory_class="ribosome_binding_site" /gene="ybjP" /locus_tag="STM0892" /note="putative RBS for ybjP; RegulonDB:STMS1H001185" gene complement(962615..963952) /locus_tag="STM0893" /db_xref="GeneID:1252411" CDS complement(962615..963940) /locus_tag="STM0893" /note="similar to E. coli putative transposase (AAC74651.1); Blastp hit to AAC74651.1 (398 aa), 55% identity in aa 2 - 398" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage integrase" /protein_id="NP_459869.1" /db_xref="GI:16764254" /db_xref="GeneID:1252411" /translation="MTLLDAGGIMAKPAYPTGVEKHGDKLRICFHYKGRRVRENLGVP DTPKNRKVAGELRASVCFAIKVGTFDYAAQFPDSPNLKLFGIVNKEITVAELADKWLK LKEMEISKNTMLRYESIIKISVSLLGGRVLASSVTQEDLLFFRKELMTGHHITRPGRE LAPKGRSVATVNSYLGVVSGLFQFAARNGYIPQNPFNGITMLKRAKAEPDPLSREEFA RLIDACHHQQIKNLWSLAVYTGMRHGELCALAWEDIDLKAGTLIVRRNYTQAKEFTLP KTQAGTDRVIHLVQPAIDALKSQASFTKLSKQHKIEVKLREYGRTKTHSCTFVFNPQI TDRSGKSKAHYAAPSLNRIWESALRRAGLRHRKAYQSRHTYACWALAAGANPNFIASQ MGHSNAQMVYTVYGAWMADNNQSQVDILNQQLASTAPGVPQKDNMLNFI" regulatory complement(963947..963952) /regulatory_class="ribosome_binding_site" /locus_tag="STM0893" /note="putative RBS for STM0893; RegulonDB:STMS1H001186" gene complement(963968..964216) /locus_tag="STM0894" /db_xref="GeneID:1252412" CDS complement(963968..964210) /locus_tag="STM0894" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage excisionase" /protein_id="NP_459870.1" /db_xref="GI:16764255" /db_xref="GeneID:1252412" /translation="MQTIIYQIAPNDWVTDEVLMASTGLKPGTILRARKKAWFVGREY KHMTLDGKPKANGECLYHLPTINRWIRNMPDPDVDL" regulatory complement(964211..964216) /regulatory_class="ribosome_binding_site" /locus_tag="STM0894" /note="putative RBS for STM0894; RegulonDB:STMS1H001187" gene complement(964576..964890) /locus_tag="STM0895" /db_xref="GeneID:1252413" CDS complement(964576..964884) /locus_tag="STM0895" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459871.1" /db_xref="GI:16764256" /db_xref="GeneID:1252413" /translation="MNVLKQQITASIAKDIAFRLGAELNDEEADIFADGYNAAMLQNC NVVTSGKPLTITLPDTSSKAFWSSTGKNETFHPETYKRQVKEAIERSCVIAGIGVEVK " regulatory complement(964885..964890) /regulatory_class="ribosome_binding_site" /locus_tag="STM0895" /note="putative RBS for STM0895; RegulonDB:STMS1H001188" gene complement(965344..965740) /locus_tag="STM0896" /db_xref="GeneID:1252414" CDS complement(965344..965736) /locus_tag="STM0896" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459872.1" /db_xref="GI:16764257" /db_xref="GeneID:1252414" /translation="MGSPVGRNDEAETVLREVEMAMKTELATVAARDLQIIEYRGQRV VTTEQLAAGYGTDAENIRRNFNRNKSRFIEGKHYFQITGPELENLRVTFSPAQISNKT RITGTYSNAEFQSRVSNWLTDFFRIWSE" regulatory complement(965735..965740) /regulatory_class="ribosome_binding_site" /locus_tag="STM0896" /note="putative RBS for STM0896; RegulonDB:STMS1H001189" gene complement(966312..966733) /locus_tag="STM0897" /db_xref="GeneID:1252415" CDS complement(966312..966728) /locus_tag="STM0897" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459873.1" /db_xref="GI:16764258" /db_xref="GeneID:1252415" /translation="MPSISHQVFLSGWTKRRNAVKNNTIEIYRRRIAIAALERMKRKT GSNCVIVNMPDGDIQKIDFDEKSMLKLLMRFERQACSEYGISESTSFIRSTYMNSLDI NGHTEYLTETGKLIVDELLGEVITWAKEKYFSGGIN" regulatory complement(966728..966733) /regulatory_class="ribosome_binding_site" /locus_tag="STM0897" /note="putative RBS for STM0897; RegulonDB:STMS1H001190" gene complement(967914..968613) /locus_tag="STM0898" /db_xref="GeneID:1252416" CDS complement(967914..968609) /locus_tag="STM0898" /codon_start=1 /transl_table=11 /product="predicted Fels-1 prophage transcriptional regulator" /protein_id="NP_459874.1" /db_xref="GI:16764259" /db_xref="GeneID:1252416" /translation="MFVKVGQKIRELRKARKMTITQLAALTDWDVGNISRLERGMQGY SAQSIQKIAEALQVPVSELFSTETDSDTVNKYSVLSLSHQRRNDVYRVDVMDVSASAG NGNSSRDFIEVISSIEYVTEEAKTLFGHRPANQVKLINVRGDSMQGTIEPGDLIFVDI GVNYFDGDGIYVFDFSGDLYVKRLQKIKSQLLVLSDNPLYKEWQITKEEMEMLHVCGK VLLSQSQQIRRHA" regulatory complement(968608..968613) /regulatory_class="ribosome_binding_site" /locus_tag="STM0898" /note="putative RBS for STM0898; RegulonDB:STMS1H001191" gene 968722..968976 /locus_tag="STM0898A" /db_xref="GeneID:1252417" CDS 968722..968976 /locus_tag="STM0898A" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459875.1" /db_xref="GI:16764260" /db_xref="GeneID:1252417" /translation="MRMFTTPLRKARLNAKLTIQEVATQTKCDPGNLSRMERGIQRPS PELAEKLAKLFCTELTEIQILYPERFFPDGNANQNTTGNA" gene 969470..969844 /locus_tag="STM0899" /db_xref="GeneID:1252418" regulatory 969470..969475 /regulatory_class="ribosome_binding_site" /locus_tag="STM0899" /note="putative RBS for STM0899; RegulonDB:STMS1H001192" CDS 969476..969844 /locus_tag="STM0899" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459876.1" /db_xref="GI:16764261" /db_xref="GeneID:1252418" /translation="MNTDLKQNLIALLEEQFIRSDDKVVFDYVMQKKIKSQGYHLQRN FSISISGGRKGFIDCLVASPDGQQCAIEVDKRTPRSRSLLKLSELPEGISGFVLLKDG KHPLRYSEGGIDVIRATKFK" gene 969994..971585 /locus_tag="STM0900" /db_xref="GeneID:1252419" regulatory 969994..969999 /regulatory_class="ribosome_binding_site" /locus_tag="STM0900" /note="putative RBS for STM0900; RegulonDB:STMS1H001193" CDS 970002..971585 /locus_tag="STM0900" /note="similar to E. coli putative ATP-dependent helicase (AAC75245.1); Blastp hit to AAC75245.1 (586 aa), 29% identity in aa 124 - 378, 25% identity in aa 20 - 158" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage DNA or RNA helicases of superfamily II" /protein_id="NP_459877.1" /db_xref="GI:16764262" /db_xref="GeneID:1252419" /translation="MLRRDWKSHNTFMVYAPTGSGKTGLAAFIVDGFVSRGMRVMFCV PYQILITQTASRFIEYGLSGDEIGYVWASHPNHNPALKIQIASADTLIRREFPDNIDL LIIDEAHLRKKRILQDIERLRASGVKVIGLSGTPFSPFLGKYYDRLIKPTTIGELIQR GDLSKYEFYAPTKPDLKGVKTKSSLEYGSDYNEAQLAEIMCGSTLVGDIVQNWLENGR DLPTIAFCVNVAHANYLTIQFNLAGINAEVMTADTPVDERQTIIHRFETGATKIIVSV GVLVAGFDSDVRCIIYARPTKSEIRWLQAIGRGLRTAPGKESCLIFDHSGTVHRLGYP DSIEYDDLPGKSDGMEESARRSSQERAEKLPRECSQCHYMKPAGVYVCPKCGHKPLAG EDVDTDTGRKLKKLGKNQHRPTKAQKQAWWSQIKFYQRQRVSQGKRPVSDGWCAHTFR EKFGEWPNDLSDFPMEITPEVSNYIRHKLIRYAKGKGKAAAPAETASPIPDSDITHKV ISAKRQVENIRSMLGRRTA" gene 971577..972550 /locus_tag="STM0901" /db_xref="GeneID:1252420" regulatory 971577..971582 /regulatory_class="ribosome_binding_site" /locus_tag="STM0901" /note="putative RBS for STM0901; RegulonDB:STMS1H001194" CDS 971582..972550 /locus_tag="STM0901" /codon_start=1 /transl_table=11 /product="Fels-1 putative prophage DNA primase" /protein_id="NP_459878.1" /db_xref="GI:16764263" /db_xref="GeneID:1252420" /translation="MKTAEAAKGRWPEILEHFDLPPITGKNHYRGECPVCGARGKFRI DDRDGAGTWICVCGSGDGMKLVTLTQGKPFNEICTEIDRLIGNDYQRVKIPVNSSATS LRKRVLSKFSKLEALRGTSGAAYLNSRGIFNLPAEAIRFNARQRHNGCVFQSLYSLAT DDKGELCYLHQTLLDGAKKADIGSSSKRLKSLQEDNYLDHARSVAIRMFPVASTLGIA EGIETALSAHQIYKVNTWATINSGFMKKFRVPAGVLHLIIFADRDENSATGLAAAYEC AHANLMAKNDLQRVSVYWPDHGDFNNMLMNGDQVRELVFHKKKVAA" gene 972544..973410 /locus_tag="STM0902" /db_xref="GeneID:1252421" regulatory 972544..972549 /regulatory_class="ribosome_binding_site" /locus_tag="STM0902" /note="putative RBS for STM0902; RegulonDB:STMS1H001195" CDS 972550..973410 /locus_tag="STM0902" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459879.1" /db_xref="GI:16764264" /db_xref="GeneID:1252421" /translation="MRTDNNEHKALFTIPTAAHSSALVNVKPLPEQRRITGHKQTDAY LWVLEVIHLNEPAHLDAAEAALEKIKISPKEAGERYSRYLLANGCDPFQIAFGTIGMN NPANAIKSARENIKKASEVRATFGSYESAMEDVEAERVIKSSAKFIDDYDWGWTTEEL EAGHIDGGRMFEIDEQRRVMVDGYRDVLPEPHTLSDVVREFIYWDWLYQVRHTAGREL GHGYGYSEHHKSVCDRERYLEKLLATIKPLSRAEAVEVCRWFLASGKDEYMEDKGAAV ILNLVGECEE" gene 973402..974222 /locus_tag="STM0903" /db_xref="GeneID:1252422" regulatory 973402..973407 /regulatory_class="ribosome_binding_site" /locus_tag="STM0903" /note="putative RBS for STM0903; RegulonDB:STMS1H001196" CDS 973407..974222 /locus_tag="STM0903" /note="similar to E. coli orf, hypothetical protein (AAC74632.1); Blastp hit to AAC74632.1 (260 aa), 38% identity in aa 11 - 130, 37% identity in aa 152 - 259, 35% identity in aa 121 - 165, 58% identity in aa 123 - 134, 40-1073758628dentity in aa 168 - 187" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage chaparone" /protein_id="NP_459880.1" /db_xref="GI:16764265" /db_xref="GeneID:1252422" /translation="MKLEASLKHFSPQGMHISDSVKETSPDRLTGTDIMVAIGTTSSR ARFGLAAFFGKAGISKTDEQLAVQALVRHAMDTAPKNVRKAAGGEFGWCMLVLAQFAF AEYSRSAATSVTCHTCKGSGRITRTQTTRKVSYPWGKAPYWASKSRAVRPSDWEKWTE VTEIVPAVCEACDGKGTISARCRCGGKGEVLDRIATKERGVPVFKTCERCSGEGYSRV SSATVHRAILKRLPDLHQSSWSRNWKPFYEMLVDVLYKGERQAASEFEKATAY" gene complement(974377..974777) /locus_tag="STM0904" /db_xref="GeneID:1252423" CDS complement(974377..974769) /locus_tag="STM0904" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459881.1" /db_xref="GI:16764266" /db_xref="GeneID:1252423" /translation="MPGYYKISHSWEYRRRTCQDDVLLEAVITSDTNLNTEKTLLQWL NDKNKNKGTNTVDYKDITCWYYGGVWLHYAINNNALSLYMHSSGEDAFDSLNYCAYEI AKTFYKNHSDISILWIEHPHKRNKLKET" regulatory complement(974772..974777) /regulatory_class="ribosome_binding_site" /locus_tag="STM0904" /note="putative RBS for STM0904; RegulonDB:STMS1H001197" gene 975827..976225 /locus_tag="STM0905" /db_xref="GeneID:1252424" CDS 975827..976225 /locus_tag="STM0905" /note="similar to E. coli orf, hypothetical protein (AAC74261.1); Blastp hit to AAC74261.1 (122 aa), 48% identity in aa 3 - 118" /codon_start=1 /transl_table=11 /product="Fels-1 prophage hypothetical protein" /protein_id="NP_459882.1" /db_xref="GI:16764267" /db_xref="GeneID:1252424" /translation="MWMRVFVIQELNMKSVIMALFLVPGLFMASAVAKQPESAAVYSP GRGVLCDQYFCADSTGISFVLTKHYAGSVQLKKLKSMGDFDRTAFTFSNGIFCDVKER LCRQDRYFGNDGKRSGVVNQHFTKILFGSK" gene 976808..977159 /locus_tag="STM0906" /db_xref="GeneID:1252425" regulatory 976808..976813 /regulatory_class="ribosome_binding_site" /locus_tag="STM0906" /note="putative RBS for STM0906; RegulonDB:STMS1H001198" CDS 976815..977159 /locus_tag="STM0906" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459883.1" /db_xref="GI:16764268" /db_xref="GeneID:1252425" /translation="MKMHFDPHSWDSWIELFQSWWRGDVPIGGVVMAIVVAFFRMVYN GSSWKETLFEGLLCGSLTLTAVSALDYFDVPKSLTIAIGGTIGFIGVKKISTIISTYF SNRFGGGNPPQV" gene 977156..977776 /locus_tag="STM0907" /db_xref="GeneID:1252426" regulatory 977156..977161 /regulatory_class="ribosome_binding_site" /locus_tag="STM0907" /note="putative RBS for STM0907; RegulonDB:STMS1H001199" CDS 977162..977776 /locus_tag="STM0907" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage chitinase" /protein_id="NP_459884.1" /db_xref="GI:16764269" /db_xref="GeneID:1252426" /translation="MNELQFQQAAGISAGLSARWFPHIDAAMSEFGITAPLDQAMFIA QTGHESAGFTVLRESFNYSVEALKKTFGKRLTPYQCEMLGRIDGRQVAHQPQIANLVY GGRMGNKDAGDGWKYRGRGLIQITGLENYTRCGVALKLDLVANPGQLELERHAARSAA WFFVTKGCLKYSGDLVRVTQIINGGQNGFGDRRERFEKAKSVLV" gene 977762..978258 /locus_tag="STM0908" /db_xref="GeneID:1252427" regulatory 977762..977767 /regulatory_class="ribosome_binding_site" /locus_tag="STM0908" /note="putative RBS for STM0908; RegulonDB:STMS1H001200" CDS 977773..978258 /locus_tag="STM0908" /note="bacteriophage ES18 gp15 protein (gi|1143595)" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459885.1" /db_xref="GI:16764270" /db_xref="GeneID:1252427" /translation="MNLLPVLLKKYWLQLSVTLLIAALAWTTEHYRDNAIQYKSQRDT ASHRLTLANATITDMTKRQRDIAALDARYTKELADAKAENDALRDDVAAGRRRLLVNA TCPAMPTGKSTSAARVDNAARPRLADSAQRDYFTLKERVTTMQKQLEGAQDYIRTQCL K" gene 979087..979584 /locus_tag="STM0909" /db_xref="GeneID:1252428" regulatory 979087..979092 /regulatory_class="ribosome_binding_site" /locus_tag="STM0909" /note="putative RBS for STM0909; RegulonDB:STMS1H001201" CDS 979093..979584 /locus_tag="STM0909" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459886.1" /db_xref="GI:16764271" /db_xref="GeneID:1252428" /translation="MDGELKNLKCNISQLAAITGLHRQTVVSRLSGVPLAPGSNEKNK LYLLTDVIRVLMEAPVSQAAEHQDPNKMTPKERKDWFDSEKGRLWLEKEMKQVVPLPE VRQQMAAIVKAITQVLEVWPDKLERDKGWSADQLNEAQDVVDEVRILLVKAIQETADD DGE" gene 979563..981679 /locus_tag="STM0910" /db_xref="GeneID:1252429" regulatory 979563..979568 /regulatory_class="ribosome_binding_site" /locus_tag="STM0909" /note="putative RBS for STM0910; RegulonDB:STMS1H001202" CDS 979571..981679 /locus_tag="STM0910" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459887.1" /db_xref="GI:16764272" /db_xref="GeneID:1252429" /translation="MTGNKYGSAAAVRREVAEYLRPPRRMPVAEGIKQFMFVPRGANT AVPWDDTLTPYMNEAINTLSKREYDAVIFAGPARTGKTLGLIDGWIVYGIVCDPADML VVQMTETKAREHSKTRLARTFHHSPEVRKRLSPSRNDNNVHDKMFRDGSFLKIGWPSI TVFSSSDYKRVALTDYDRFPENIDGEGDGFSLASKRTTTFMSAGMTLAESSPGREITD VKWRRSSPHEAPPTTGILSLYNRGDRRRWYWPCPHCGDWFQPAMENMVGYRDNPDLMA ASEAARIQCPHCRALIQPEQKRGLNNRGVWLKEGQFINKDGEISGEARRSRIASFWME GPAAAYQTWQQLVYKLLTAEEEYERTGSEETLKAVINTDWGLPYLPRISLDQRKAETL IARAEKLPPRRVPDGVRFLVATVDVQGGKKRRFVVQVVGYGSHGERWIVDRFNITRSL RCDESGEAMQINPGAYPEDWHLLITDVLERAWPLVGHPEQEMSVLCMGVDSGGEDGVT DNAYAFWRHCRREGLAGRVYLFKGDSTARSKIFSKSYPNNTGRSDRQARACGEVPLYL LQTNALKDRIASALDRKEPGANYVHIPDWLGDWFFEELTYEERGMDGRWAKPGKGANE ALDLLCYAHALVMIRGYERINWDNPPPWARLPESAQSSRNTSAAVDPEPVTNESENHE MTEQHNPAMPFGGVSGGGWL" gene 981873..983414 /locus_tag="STM0911" /db_xref="GeneID:1252430" regulatory 981873..981878 /regulatory_class="ribosome_binding_site" /locus_tag="STM0911" /note="putative RBS for STM0911; RegulonDB:STMS1H001203" CDS 981879..983414 /locus_tag="STM0911" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459888.1" /db_xref="GI:16764273" /db_xref="GeneID:1252430" /translation="MNFLDKAIGALAPGWGASRLRSRMAIRAYEAITPTRTHRVKREN RSGDQLIQLAGKSLREQARWFDNNHDLVIGALDKMEERIIGAKGIIVEPQPLTGTGTL NSVLAEKIRRCWAEWSVSPEVTGQYTRPVLERLMLRTWLRDGEVFTQVLTGKISGLSP VAGVPFWLEALEPDYIPLERTDNNSNLVQGIYFNEWRRPVKYLVCQSWPGAGAAAVAV KEVTAENMLHLRFTRRLNQARGASLLAPVIIRLMDLKEYEDSERIAARIAASLGMFIK KQDVGTDGYVAPEKRKETQIQPGMLFDGLNPGEDIGMIKSDRPNAGLESFRMGQLRAV AAGLRGSFSSIARNYDGTYSAQRQELVEAQEGYSILQDSFIAAFTRPLYRRWLAAAVA SGAIEVPAGTDMSSLFNAVYSGPVMPWIDPLKEANAWRVLIRGGAATEGDWVRARGGA PADVKRRRKAETDENRKLGLVFDTDPAHETGEQSDVKEEKKDPEKSTQGDGSRAREER KRR" gene 983260..985452 /locus_tag="STM0912" /db_xref="GeneID:1252431" regulatory 983260..983265 /regulatory_class="ribosome_binding_site" /locus_tag="STM0911" /note="putative RBS for STM0912; RegulonDB:STMS1H001204" CDS 983266..985452 /locus_tag="STM0912" /note="similar to E. coli ATP-dependent proteolytic subunit of clpA-clpP serine protease; ClpP family members; heat shock protein F21.5 (AAC73540.1); Blastp hit to AAC73540.1 (207 aa), 29% identity in aa 73 - 203" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protease subunits of ATP-dependent proteases" /protein_id="NP_459889.3" /db_xref="GI:1109557602" /db_xref="GeneID:1252431" /translation="MKTVSWGWCLTPIRRMKPESNPMLKRKKRTLKSPPRAMAAARGK NESGAESWYTIRAAADNAADISIYDEIGGWGISAHWFAEELVALGSITQINLHIHSPG GSIFDGLAIYNLLKNHPARKVVYVDGVACSMASVIAMVGDPVIMPENAMMMIHRPRGI AGGESSDIRDYADLLDKMESVIIPIYAEKTGKSPDDIAALLASETWMSGAECVREGFA DKVIQPVRAMAHLHSKRLEEFEHMPQNVKNMIIAPQGNAGTLTQPEPEPQAIMTTPPV AVTTPSPQPATTAPGTDEITLRARFQEEQRQRISGIQNVFGMFGNRHGELMAQCIADV DCNVDAAKDKLLEALGRGVTPTNTLGGTQNTQNPMLSHIYAGNGNFAGDGIRASLMAR AGFESSQADNPYNAMTMRELARMSLTERGVGVSTLNPMQMVGMAFTHSTSDFGNILLD VANKAILQGWEEAPETYELWTRKGQLSDFKTAHRVGMGGFNSLRQVREGAEYKYVTTG DKQATIALATYGELFSITRQAIINDDLNMLTDVPMKLGRAAKSTIADLVYAILTSNPK MSTDNVNLFDKAKHANVLEGALMDVASLDKARQLMRTQKEGERHLNIRPAFVLVPTAL ESVTNQVIKSTSVKGADINAGIINPVKDFATVIAEPRLDDNSQSTFYLAAAKGTDTIE VAYLNGVDTPYIDQQDGFSVDGVTTKVRIDAGVAPVDHRGLVKCSA" gene complement(985466..986140) /locus_tag="STM0913" /db_xref="GeneID:1252432" CDS complement(985466..986137) /locus_tag="STM0913" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459890.1" /db_xref="GI:16764275" /db_xref="GeneID:1252432" /translation="MIHSSEIWYFPLTRCQRVTVKSSPRQSTACFLAGLYCGLNTIRC VPSPESAPSSAINVASAATYSAPSIRTGRPKRAAVTSSILVLRRSKGLAIEPYRHRFL PFCRRRPGHAHQRQSAGGIQLYLTVFQIHFFSRRHHIGGQFGDQENAVGDAVPGGACR NIGDSDDEHIAGLHQAATLYCSGGRNGERGARLYIILCHNDFLRSGHEWPDFRRKKSP DGPFG" gene 986129..986720 /locus_tag="STM0914" /db_xref="GeneID:1252433" regulatory 986129..986134 /regulatory_class="ribosome_binding_site" /locus_tag="STM0914" /note="putative RBS for STM0914; RegulonDB:STMS1H001206" regulatory complement(986135..986140) /regulatory_class="ribosome_binding_site" /locus_tag="STM0913" /note="putative RBS for STM0913; RegulonDB:STMS1H001205" CDS 986136..986720 /locus_tag="STM0914" /codon_start=1 /transl_table=11 /product="putative Fels-1 phage tail component" /protein_id="NP_459891.1" /db_xref="GI:16764276" /db_xref="GeneID:1252433" /translation="MSLKGLENAIRNLNSLDRHMVPQASAWAVNRVAASAVSAATHRV AKEAVAGDNQKKGIPFRLVKQRVRLWKASATGKHYARIRVNRGNLPAIKLGSAQVRLS RRGGKLLRRGSVLKIGPYLFRDAFIQQLANGRWHVMRRVNGKSRYPIDVVKIPLVAPL TQAFETEKKRMLEQEMPKQLMYALKQQLRLYLTR" gene 986712..987118 /locus_tag="STM0915" /db_xref="GeneID:1252434" regulatory 986712..986717 /regulatory_class="ribosome_binding_site" /locus_tag="STM0915" /note="putative RBS for STM0915; RegulonDB:STMS1H001207" CDS 986717..987118 /locus_tag="STM0915" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459892.1" /db_xref="GI:16764277" /db_xref="GeneID:1252434" /translation="MNKHTQIRHAVLAKLESLSGSSAMLHDGLPVFIEPEELPALAVW LTDAQFAGQMLDERDWEAVLHVAVFLKAQAPDAELDMWMEEKIFPALEEVRGLENLIN TMTPLGYDYQRDSEMATWGMAEITYRITYTN" gene 987122..987872 /locus_tag="STM0916" /db_xref="GeneID:1252435" regulatory 987122..987127 /regulatory_class="ribosome_binding_site" /locus_tag="STM0916" /note="putative RBS for STM0916; RegulonDB:STMS1H001208" CDS 987129..987872 /locus_tag="STM0916" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage major tail protein" /protein_id="NP_459893.1" /db_xref="GI:16764278" /db_xref="GeneID:1252435" /translation="MGVPNPLIKTKGAGTTFWLYTGRGDAFHNPLADDDWLRLAGIKD LQPGEMTADAEDDDYLDDEDADWKSTTQGQKSVGDTTATLAWKPGETGQKTLVDLFDS GEVRAFRIKYPNGTVDIFRGWLSSLGKTITAKEVMTRTVKISGVGRPFLAEEDAPSVI SVSGVTVAPLNASVAVGATTTLTFTLKPDDATDKSLRIASSDTTLATVTQKDNVATVK GVKAGSVTVVGITTDGSLVAVAPVTVTAP" gene 988334..988656 /locus_tag="STM0917" /db_xref="GeneID:1252436" regulatory 988334..988339 /regulatory_class="ribosome_binding_site" /locus_tag="STM0917" /note="putative RBS for STM0917; RegulonDB:STMS1H001209" CDS 988339..988656 /locus_tag="STM0917" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage minor tail protein" /protein_id="NP_459894.1" /db_xref="GI:16764279" /db_xref="GeneID:1252436" /translation="MMQLAREFRRPDWRRMLSEMTASELGEWADHFVRFSFSDALLDA EFATLKALVTGLVTGEAQDADDFRLLSASESAPEKTDEELMRLGEGITGGVRYGPDSE PGH" gene 988621..991789 /locus_tag="STM0918" /db_xref="GeneID:1252437" regulatory 988621..988626 /regulatory_class="ribosome_binding_site" /locus_tag="STM0917" /note="putative RBS for STM0918; RegulonDB:STMS1H001210" CDS 988628..991789 /locus_tag="STM0918" /note="lambda phage H tail component homolog (gi|2232364)" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage minor tail protein" /protein_id="NP_459895.1" /db_xref="GI:16764280" /db_xref="GeneID:1252437" /translation="MDQIANLVIDLSVDAADFKNEVPRVKKLLDEVSGKTDLVTQRQK NLIETLKSQGRAYVDGSIAASDAGTRQKQAMVMAAQGYDQVAQRVDMTQRHVAALSQK MQEERAQAAAVAAAQDQASAAFYRQIDSVKSLENGLQQLQRIQTQIRQARNSGGIAQQ DYLALTSEVAAKTRTLTDAEAAATKQKVRFIQRLKEQVTSQRLSSTEILRVKAAQLGV SSAADIYIRQMENAGTVTRSLGLKSAAARREIGVLFGELARGNFGALRGSGITLANRA GWLETLMSPKGLAVGGTVTAIAAAVYGLGKAWYSGTKEGEEFNKQLILTGNYAGKTAG QLQQMARSIAGNGITQHDAAGILAQVVGSGAFGSTDLSRVANAAARLKQATGQDISET ISQFKKLKDDPVNAVVALNDSLHFLTATQYQQISAAQAVGDSQLAAALAIQAYSDAVM QRTGAVQDNLGSLEKAWNWVRNAAVGAWDAMLGVGRSPDTAMKRQDMFAQWQAAEKEY QVLSRNLKVDPDYSGSNPLQKADAERLRNARQSLALKKAAYDEADKAYAQEGLAAAME KQRTDQQAQAIRSQQEFNQLVKNGTSQAEKRAQAEQELNQLIAKNRRDAKDGVTALWT EKDISSARTGIEKRFKDPTPPKTAATRNDEASRLLLRYSQQQAQVEGQIAAAKQSSGL NTDRMTEAHKQLLALQQRISDLSGKKLTADEKSVLAHKTELVQALTLLDLKQQELQRQ SALNDLKKKAVQLESQLKLEEQSQRQRHDLDLATAGMGDVQKQRYQEQLTLRQKFAQQ QEQLERDSRQKGTYGSAEYSEAEQKLRDSLNVQLNENRRYWQQLSVEQGNWKNGATRA FQNYTADAGNAAGVAEQLFSSAFSSMGNGLATFVTTGKLSFKSFTASLLSDLAKIMAQ MAMMQAVKGVGNALGFGVTANADGGVYQSASLSRYSGSVVNTPTFFAFAKGAGVMGEA GPEAILPLKRGADGKLGVVAAGMGGMAMFAPQYHIAINNDAGNGQIGPGALKVVYDLG RKAAADFIAQQGRDGGRLSGAYS" gene 991782..992118 /locus_tag="STM0919" /db_xref="GeneID:1252438" regulatory 991782..991787 /regulatory_class="ribosome_binding_site" /locus_tag="STM0919" /note="putative RBS for STM0919; RegulonDB:STMS1H001211" CDS 991789..992118 /locus_tag="STM0919" /note="lambda phage M tail component homolog (gi|2232363)" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage minor tail protein" /protein_id="NP_459896.1" /db_xref="GI:16764281" /db_xref="GeneID:1252438" /translation="METFHWKIRPDMTMEAEPQVIAVKMGDGYEQRRPAGLNSNLAKY NVTIKVRKGEHQRLDAFLSRHGAVKSFLWTPPYTWTQIRVVSRKWSVSVGAMWVTYTT TFEQVVV" gene 992238..992763 /locus_tag="STM0920" /db_xref="GeneID:1252439" regulatory 992238..992243 /regulatory_class="ribosome_binding_site" /locus_tag="STM0920" /note="putative RBS for STM0920; RegulonDB:STMS1H001212" CDS 992245..992763 /locus_tag="STM0920" /note="ail and ompX homolog (gi|2232362)" /codon_start=1 /transl_table=11 /product="Fels-1 prophage attachment and invasion protein" /protein_id="NP_459897.1" /db_xref="GI:16764282" /db_xref="GeneID:1252439" /translation="MKQVLIAVLIVSVTGGLAQAAGVKNTVSLGYAYTDLGGALSGNA RGLNLKYNAEDLNSGFGGMGSFTFTTADIQSYSGGKAGDMDYSSFLVGPSYRFNEYLN AYVMAGLGHGHIDDKRDNSGKKTGFAYGAGVQINPVENIAINASYEYSRFSAYDSKVN AGTWVLGVGYSF" gene 992889..993590 /locus_tag="STM0921" /db_xref="GeneID:1252440" regulatory 992889..992894 /regulatory_class="ribosome_binding_site" /locus_tag="STM0921" /note="putative RBS for STM0921; RegulonDB:STMS1H001213" CDS 992895..993590 /locus_tag="STM0921" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage minor tail protein" /protein_id="NP_459898.1" /db_xref="GI:16764283" /db_xref="GeneID:1252440" /translation="MRDIPQDTLSQTTKTEQSARIDLWEIDLTAIGGQRYYFSNELNE KGDPVTWQGRKYDAYPIQGTGFELSGKGTSARPTLAVSNLFGMVTGLAEDVQSLVGGT VVRRVVYARFLDAVNFTGGNPEADPEQEVVSRWVIEQLSELKKTTATFVLATPTETDG SVFPGRTMLADVCNWTYRSDECGYAGPPVADEFDKPTADPSKDACSKCRTGCELRDNL PRIGCFLSINRLS" gene 993596..994336 /locus_tag="STM0922" /db_xref="GeneID:1252441" regulatory 993596..993601 /regulatory_class="ribosome_binding_site" /locus_tag="STM0922" /note="putative RBS for STM0922; RegulonDB:STMS1H001214" CDS 993602..994336 /locus_tag="STM0922" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage tail assembly protein" /protein_id="NP_459899.1" /db_xref="GI:16764284" /db_xref="GeneID:1252441" /translation="MEKTILVHAAACAPAESCGYVVNTSAGERYFPCQNLSAEPTMYF RMAPEDYLRAQAAGDVVALVHSHPDGLPFLSDVDRRLQVQSGLPWWLVCHDRIYTFRC VPFLTGRVFEHGVTDCYTLFRDAYHLAGIEMPDFSRGEDWWKNGENLYLDNLEATGFY RVSGEEAQSGDILICCFGSSVANHAAIYCGNGELLHHIPDQLSKRERYTDKWQRRTHS IWRHRAWHESAFTGIYNDLAAALASV" gene 994228..994911 /locus_tag="STM0923" /db_xref="GeneID:1252442" regulatory 994228..994233 /regulatory_class="ribosome_binding_site" /locus_tag="STM0923" /note="putative RBS for STM0923; RegulonDB:STMS1H001215" CDS 994234..994911 /locus_tag="STM0923" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage tail assembly protein" /protein_id="NP_459900.1" /db_xref="GI:16764285" /db_xref="GeneID:1252442" /translation="MATPHTLDMATPGMARVCLHGDLQRFGRRFSFSIKTGAEAIYAL AVQIPGFRQKMNEGWYQIRIAGQDVDETSVSARLHEPLPDGAIIHIVPRIAGAGKGGL FQVVLGAVAIGASFFTAGASMAAWGAALSAGAISASSVLFSMGAAMMLGGVAQMLTPQ AKIPSSRQTDNGKQNTWFSSLDNMVAQGNALPVLYGEMLVGSRTISQEISTRDEGGGG QVVIIGR" gene complement(994965..995495) /locus_tag="STM0924" /db_xref="GeneID:1252443" CDS complement(994965..995489) /locus_tag="STM0924" /EC_number="1.15.1.1" /note="similar to E. coli superoxide dismutase precursor (Cu-Zn) (AAC74718.1); Blastp hit to AAC74718.1 (173 aa), 55% identity in aa 1 - 173" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage Cu/Zn superoxide dismutase" /protein_id="NP_459901.1" /db_xref="GI:16764286" /db_xref="GeneID:1252443" /translation="MNKKLMTLAVFLFSSAASAASTDATVNLVNANGTGQKIGNITIT ETEYGLLFTPHLSSLPAGIHGFHIHENGSCDAGMKDGKPVAALAAGGHLDPQHTNKHL GPYNPEGHLGDLPALYVNQAGNADYPVLAPRLKSISQVKGHAIMIHTGGDNHEDHPNP LGGGGARIACGVIK" regulatory complement(995490..995495) /regulatory_class="ribosome_binding_site" /locus_tag="STM0924" /note="putative RBS for STM0924; RegulonDB:STMS1H001216" gene 995583..999029 /locus_tag="STM0925" /db_xref="GeneID:1252444" CDS 995583..999029 /locus_tag="STM0925" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage host specificity protein" /protein_id="NP_459902.3" /db_xref="GI:1109557603" /db_xref="GeneID:1252444" /translation="MMTNRLWAVLSFQREQIMGKGGGSSKTPHEAPDDLKSSQMLTVV DAICEGPIEGPVDGLKSVRINKTPVLDSDGNAMVHGVTVVYRVGEDEQSAMEGFEDSG AETLLGVEVKKSEPVTRTITTKTVDRLRFTFGVQSLVSTSTKGDRNPTSVQMLIQFRR DGQWQVERDITITGKTTTQFLASVVIDDLPPRPFEVRMMRITDDSTSDLLQNKTVWSG YTEIIDVKQCYPNTAVIGVKVDAEQFGSQQVTRNYLLRGRIVPVPSNYDPVKRTYTGI WDGTFKPAWTDNPAWCVLDMLTHPRYGMGNRIGVADVDKWALYAIAQYCDQPVPDGFG GTEPRITCNAYLTDQRKAWDVLGDFCSLMRCMPVWNGSTLTFVQDRPSDKVWTYTQSN VVMPADGAPFVYSFSALKERHNAAEVRYTDPNNGWETSTELVENDAAIRRYGRNVLKM DAFACTSRGQAHRAGLWAITTELLETQTVDFSVGAEGLRHVPGDIIEVCDSDYAGVTV GGRVLSVDSLSRTLTLDREVDIPAGGNVVLNLVGSNGQPVTVAVTAHPAPDRVTVSQL PDGVAAYSVWGLKLPDLRQRLFRCVAIRENDDGTYAITAVQHVPEKESIVDNGAKFDP LPGTSITNTPPAVQHLTTEILAEEGQYQARARWDTPRVVKGVNFSLRLTVKAEDDSDR LASSLTLTETEHTFRNLTPGRYTLSVRAVNSQGQQGDPASTQFSISAPAAPSFIELTP GYFQITATPRQAVYDPTVQYEFWFSDAQITDIHQVENAARYLGTALYWIAASVNIRPG RDYYFYIRAVNRVGKSAFVEATGQASNDAAGYLDFFKGQITESHLGKELLEKVDLTED NASKLQQFSKEWQDANGKWNAMWGVKIEQTEDGRHYVAGLGLSMEDTPDGKISQFLVA ADRIAFINPQNGNQTPGFVMQGDQIFMNEAFLKYLSAPTITSGGNPPAFSLTPDGRLT AKNADISGHINAISGALNNVVIAEDCTIQGTLRAERILGDIVKAVGKEFPYFREPATG AKRYASGTLTVQIDDDQSFDRQIIIPPINFQGSYYGRNDTWDTCTLEVRRNGALIYSG TSSSVPESYGATLDMPAGGGIVTLTFSVSTRGNSTGWPNSRISDLILMVVKKSTAGIR IS" gene 999067..1001445 /locus_tag="STM0926" /db_xref="GeneID:1252445" regulatory 999067..999072 /regulatory_class="ribosome_binding_site" /locus_tag="STM0926" /note="putative RBS for STM0926; RegulonDB:STMS1H001217" CDS 999073..1001445 /locus_tag="STM0926" /note="similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 50% identity in aa 3 - 515, 57% identity in aa 878 - 1084, 43% identity in aa 1008 - 1122, 34% identity in aa 354 - 568, 29-1073758628dentity in aa 116 - 346, 24% identity in aa 962 - 1111, 26-1073758654dentity in aa 940 - 1106, 27% identity in aa 420 - 581, 23% identity in aa 959 - 1113, 23% identity in aa 961 - 1079, 30% identity in aa 778 - 829, 22% identity in aa 778 - 850" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage minor tail protein" /protein_id="NP_459903.1" /db_xref="GI:16764288" /db_xref="GeneID:1252445" /translation="MPVLISGVLKDGTGMPVQNCTIQLKACRTSTAVVVNTVASENPD EAGRYSMDVEQGQYTVTLLVEGYPPSPAGVITVYVDSKPGTLNDFLGAMTEDDVRPEA LRRFEAMVEEVARQASEASRNATAAGQASEQAQTSAGQAAESATAAASAAGAADASAT QAASSAASAESSAGTATTKAGEASASAASADTARTAAAASEAAAKTSEANADASRTAA GDSAAAAAASATAAQTSAERAGASETAAKTSETQAASSAGDAGASATAAAASEKAAAA SAAEAKTSETNAATSASTAAASATAASSSASEASTHAAASDTSASLAAQSRAAAGESA TRAEEAAKRAEDIADVISLEDASLTKKGIVQLSSATDSDSEALASTPKAVKTVMGEVQ TKAPLDSPALTGTPTAPTPETTAAGIEIATAAFVAAKVAQLVGSAPEALDTLKELADA LGNDPNFATTVLNKLAGKQPLDDTLTALSGKSVDGLIEYIGLRNTIDKAAGALPAGGT AVAANRLVSRGALPALTGTTRGSDSGLIMGEVYNNGYPTQYGNILRLTGTGDGEILIG WSGANGAPAPAYIRSHRDTADAEWSEWAMLYTTLNPPPDSHPVGAAIAWPSDATPAGY ALMQGQSFDKSAYPLLAIAYPSGVIPDMRGWTIKGKPASGRAVLSQEMDGNKSHSHTA RAQDTDLGTKTTSSFDYGTKSTNTTGGHTHEFGGYINSYWGDSNHTSFQPGGGAWTQA AGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAETTVKNIAFNYIVRLA" gene 1001440..1002020 /locus_tag="STM0927" /db_xref="GeneID:1252446" regulatory 1001440..1001445 /regulatory_class="ribosome_binding_site" /locus_tag="STM0927" /note="putative RBS for STM0927; RegulonDB:STMS1H001218" CDS 1001445..1002020 /locus_tag="STM0927" /note="hypothetical protein in nanH 3'region. (SW:YCDD_SALTY)" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage tail assembly protein" /protein_id="NP_459904.1" /db_xref="GI:16764289" /db_xref="GeneID:1252446" /translation="MPFKMSSKAQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTD IAPPDIPSSHIAVFDAETQTWNLKEDHRGETVYDTTTGNQMYISEPGPLPENVTSVSP GGGYKKWDSKAKAWVNDEGAEVAARLREAEGTKSRLLQMASGKIAPLQDAVDLGIATD DEKAQLDEWKKYRVLVNRVDTSNPDWPEQPV" gene complement(1002091..1003333) /gene="nanH" /locus_tag="STM0928" /db_xref="GeneID:1252447" CDS complement(1002091..1003329) /gene="nanH" /locus_tag="STM0928" /note="neuraminidase; sialidase (SW:NANH_SALTY)" /codon_start=1 /transl_table=11 /product="sialidase" /protein_id="NP_459905.1" /db_xref="GI:16764290" /db_xref="GeneID:1252447" /translation="MTRHLLNCRILYMHPPLDMHTHPFIKEGKSMTVEKSVVFKAEGE HFTDQKGNTIVGSGSGGTTKYFRIPAMCTTSKGTIVVFADARHNTASDQSFIDTAAAR STDGGKTWNKKIAIYNDRVNSKLSRVMDPTCIVANIQGRETILVMVGKWNNNDKTWGA YRDKAPDTDWDLVLYKSTDDGVTFSKVETNIHDIVTKNGTISAMLGGVGSGLQLNDGK LVFPVQMVRTKNITTVLNTSFIYSTDGITWSLPSGYCEGFGSENNIIEFNASLVNNIR NSGLRRSFETKDFGKTWTEFPPMDKKVDNRNHGVQGSTITIPSGNKLVAAHSSAQNKN NDYTRSDISLYAHNLYSGEVKLIDDFYPKVGNASGAGYSCLSYRKNVDKETLYVVYEA NGSIEFQDLSRHLPVIKSYN" regulatory complement(1003328..1003333) /regulatory_class="ribosome_binding_site" /gene="nanH" /locus_tag="STM0928" /note="putative RBS for nanH; RegulonDB:STMS1H001219" gene complement(1003903..1004278) /locus_tag="STM0929" /db_xref="GeneID:1252448" CDS complement(1003903..1004274) /locus_tag="STM0929" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_447365.1" /db_xref="GI:1109557604" /db_xref="GeneID:1252448" /translation="MGIQTSKFMPEKSKAKTKKIVVSTQSVLFKKNKHIPVIYYTATI QRRETYLPQYHLIATISFQSLNYCGFNFTPHPGNCGWDFLTIQVDLMMTQADWIILIS TVVIIIFGIILYTVICHIFKR" regulatory complement(1004273..1004278) /regulatory_class="ribosome_binding_site" /locus_tag="STM0929" /note="putative RBS for STM0929; RegulonDB:STMS1H001220" gene 1005356..1005693 /locus_tag="STM0930" /db_xref="GeneID:1252449" regulatory 1005356..1005361 /regulatory_class="ribosome_binding_site" /locus_tag="STM0930" /note="putative RBS for orf; RegulonDB:STMS1H001221" CDS 1005370..1005693 /locus_tag="STM0930" /note="similar to E. coli orf, hypothetical protein (AAC73953.1); Blastp hit to AAC73953.1 (107 aa), 94% identity in aa 1 - 107" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459907.1" /db_xref="GI:16764292" /db_xref="GeneID:1252449" /translation="MQFSTTPTLEGQSIVEYCGVVTGEAILGANIFRDFFAGIRDIVG GRSGAYEKELRKAREIAFQELGEQAKALGADAVVGIDIDYETVGKDGSMLMVSVSGTA VKTRR" gene 1005673..1006520 /gene="ybjR" /locus_tag="STM0931" /db_xref="GeneID:1252450" regulatory 1005673..1005678 /regulatory_class="ribosome_binding_site" /locus_tag="STM0930" /note="putative RBS for ybjR; RegulonDB:STMS1H001222" CDS 1005690..1006520 /gene="ybjR" /locus_tag="STM0931" /note="similar to E. coli putative regulator (AAC73954.1); Blastp hit to AAC73954.1 (276 aa), 81% identity in aa 1 - 276" /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-L-alanine amidase" /protein_id="NP_459908.1" /db_xref="GI:16764293" /db_xref="GeneID:1252450" /translation="MKALLWLVGLALLLTGCASEKGIIDKEGYQLDTRHRAQAAYPRI KVLVIHYTAENFDVSLATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGV SFWRGATRLNDTSIGIELENRGWRMSGGVKSFAPFESAQIQALIPLAKDIIARYNIKP QNVVAHADIAPQRKDDPGPRFPWRELAAQGISAWPDAQRVAFYLAGRAPYTPVDTATV LALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD " gene complement(1006517..1007540) /locus_tag="STM0932" /db_xref="GeneID:1252451" CDS complement(1006517..1007530) /locus_tag="STM0932" /note="similar to E. coli putative nucleotide di-P-sugar epimerase or dehydratase (AAC73955.1); Blastp hit to AAC73955.1 (349 aa), 93% identity in aa 13 - 349" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459909.1" /db_xref="GI:16764294" /db_xref="GeneID:1252451" /translation="MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLEKMG AEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAV AWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAAGEEVINLLAQANPQ TRFTVLRPQSLFGPHDKVFIPRLAHMMHHYGSVLLPHGGSALVDMTYYENAIHAMWLA SQPGCDHLPSGRAYNITNGENRTLRSIVQKLIDELTIDCRIRSVPYPMLDMIARSMER FGKKSAKEPPLTHYGVSKLNFDFTLDTTRAQDELGYQPIVTLDEGIERTAAWLRDHGN LPR" regulatory complement(1007535..1007540) /regulatory_class="ribosome_binding_site" /locus_tag="STM0932" /note="putative RBS for STM0932; RegulonDB:STMS1H001223" gene complement(1007626..1009071) /gene="ybjT" /locus_tag="STM0933" /db_xref="GeneID:1252452" CDS complement(1007626..1009059) /gene="ybjT" /locus_tag="STM0933" /note="similar to E. coli putative dTDP-glucose enzyme (AAC73956.1); Blastp hit to AAC73956.1 (486 aa), 84% identity in aa 11 - 486" /codon_start=1 /transl_table=11 /product="NAD(P)-dependent oxidoreductase" /protein_id="NP_459910.1" /db_xref="GI:16764295" /db_xref="GeneID:1252452" /translation="MAQRILVLGASGYIGQHLVFALSQQGHQVRAAARRIERLEKQRL ANVSCHKVDLHWPENLPALLRDIDTVYYLVHGMGEGGDFIAHERQAALNVRDALRQTP VKQLIFLSSLQAPAHEQSDHLRARQLTADTLRDAGVPVTELRAGIIVGAGSAAFEVMR DMVYNLPILTPPRWVRSRTTPIALENLLYYLVGLLDHPAREHRILEAAGPQVLSYQQQ FERFMAVSGKRRPLIPVPFPTRWISVWFLNVITSVPPTTAKALIQGLRHDLLADDAAL KKLIPQTLITFDDAVRRTLKEEEKLVNSSDWGYDALAFARWRPEYGYFPKQAGFTAQT PASLSALWQVVNRLGGKEGYFFGNILWQTRAAMDRLVGHKLAKGRPSHTLLKPGDTVD SWKVIIVEPEKQLTLLFGMKAPGLGRLSFTLHDKGRYREIDVRAWWHPHGMPGLIYWL LMIPAHLFIFRGMARRIARLAEQITEK" regulatory complement(1009066..1009071) /regulatory_class="ribosome_binding_site" /gene="ybjT" /locus_tag="STM0933" /note="putative RBS for ybjT; RegulonDB:STMS1H001224" gene complement(1009070..1010083) /gene="ltaA" /locus_tag="STM0934" /db_xref="GeneID:1252453" CDS complement(1009070..1010071) /gene="ltaA" /locus_tag="STM0934" /EC_number="4.1.2.-" /note="similar to E. coli putative arylsulfatase (AAC73957.1); Blastp hit to AAC73957.1 (333 aa), 88% identity in aa 1 - 333" /codon_start=1 /transl_table=11 /product="low-specificity L-threonine aldolase" /protein_id="NP_459911.1" /db_xref="GI:16764296" /db_xref="GeneID:1252453" /translation="MIDLRSDTVTRPGRAMLEAMMTAPVGDDVYGDDPTVNALQRYAA DLSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQP IDAAADGTLPLENVAAKIKADDIHFARTRLLSLENTHNGKVLPRAYLKDAWTFTRERG LALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAT RWRKMVGGGMRQAGILAAAGLYALKHNVARLQEDHDNAAWLAQQLREAGAEVIRHETN MLFVRVGEAQAAALGDYLRERNILINAAPIVRLVTHLDVSREQLTDVVAHWRAFLAR" regulatory complement(1010078..1010083) /regulatory_class="ribosome_binding_site" /gene="ltaA" /locus_tag="STM0934" /note="putative RBS for ltaA; RegulonDB:STMS1H001225" gene complement(1010110..1011844) /gene="poxB" /locus_tag="STM0935" /db_xref="GeneID:1252454" CDS complement(1010110..1011828) /gene="poxB" /locus_tag="STM0935" /note="similar to E. coli pyruvate oxidase (AAC73958.1); Blastp hit to AAC73958.1 (572 aa), 94% identity in aa 1 - 572" /codon_start=1 /transl_table=11 /product="pyruvate oxidase" /protein_id="NP_459912.1" /db_xref="GI:16764297" /db_xref="GeneID:1252454" /translation="MKQTVAAFIAKTLEQAGVKQIWGVTGDSLNGLSDSLNRMGTIEW MPTRHEEVAAFAAGAQAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHI PSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLP GDVALKPAPENAVTHWYHAPLPVVTPAEEELKKLAQLLRYSSNIALMCGSGCAGAHEE LVALAAKLKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLILLGTQF PYRAFYPSDAKIIQIDINPGSIGAHSKVDMALVGDIKATLRALLPLVEEKSNRKFLDK ALEHYRDARKGLDDLAKLSDKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLK MNGKRRLLGSFNHGSMANAMPQALGAQATAPGRQVIAMCGDGGFSMLMGDFLSVVQMK LPIKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKAADVD GALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELA KTNWLR" regulatory complement(1011839..1011844) /regulatory_class="ribosome_binding_site" /gene="poxB" /locus_tag="STM0935" /note="putative RBS for poxB; RegulonDB:STMS1H001226" gene complement(1011986..1012967) /gene="hcr" /locus_tag="STM0936" /db_xref="GeneID:1252455" CDS complement(1011986..1012957) /gene="hcr" /locus_tag="STM0936" /note="similar to E. coli putative enzyme (AAC73959.1); Blastp hit to AAC73959.1 (322 aa), 90% identity in aa 1 - 322" /codon_start=1 /transl_table=11 /product="NADH oxidoreductase for hcp gene product" /protein_id="NP_459913.1" /db_xref="GI:16764298" /db_xref="GeneID:1252455" /translation="MMTMPTSQCPWRMQVHHIRQETPDVWTIALLCHDYYPYRAGQYA LVSVRNSAETLRAYTLSSTPGVSEYITLTVRRIDDGTGSQWLTHDIKRGDYIWLSDAM GDFTCDDKTEDKFLLLAAGCGVTPIMSMRRWLAKYRPQADVQVIFNVRSPDDVIFADE WRQYPVTLVAENHATEGFIAGRLTTELLQSVPDLASRTVMTCGPAPYMDFVEQGVKAL GVTRFFKEKFFTPVAETATSGLKFTKLQPAQEFYAPIGTTLLEALESNKVPVAAACRA GVCGCCKTKVVSGDYTVSSTMTLSEAEIAEGYVLACSCHPQGDLVLA" regulatory complement(1012962..1012967) /regulatory_class="ribosome_binding_site" /gene="hcr" /locus_tag="STM0936" /note="putative RBS for hcr; RegulonDB:STMS1H001227" gene complement(1012966..1014629) /gene="hcp" /locus_tag="STM0937" /db_xref="GeneID:1252456" CDS complement(1012966..1014618) /gene="hcp" /locus_tag="STM0937" /note="similar to prismane-protein homolog; similar to E. coli putative prismane (AAC73960.1); Blastp hit to AAC73960.1 (552 aa), 96% identity in aa 3 - 552" /codon_start=1 /transl_table=11 /product="hydroxylamine reductase" /protein_id="NP_459914.1" /db_xref="GI:16764299" /db_xref="GeneID:1252456" /translation="MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQG LSAWAVKAREYGIINHDVDNFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQC LSVDANAHCDNPMADLQLVSDDLGDLQRQAAEFTPNKDKAAIGENILGLRLLCLYGLK GAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECAMEIGQMNFKVMSIL DAGETTKYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLP AHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGSYDDRIWTRS IVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHIITVGFGRQTLLGAADTLIDLVS REKLRHIFLVGGCDGARGERNYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLP RLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVK NIVTGPTAPGFFTPDLLAILNEKFGLRSVTTVEEDMKQLLSA" regulatory complement(1014624..1014629) /regulatory_class="ribosome_binding_site" /gene="hcp" /locus_tag="STM0937" /note="putative RBS for hcp; RegulonDB:STMS1H001228" gene complement(1014762..1015677) /gene="ybjE" /locus_tag="STM0938" /db_xref="GeneID:1252457" CDS complement(1014762..1015661) /gene="ybjE" /locus_tag="STM0938" /note="similar to E. coli putative surface protein (AAC73961.1); Blastp hit to AAC73961.1 (315 aa), 88% identity in aa 17 - 315" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459915.1" /db_xref="GI:16764300" /db_xref="GeneID:1252457" /translation="MFSGLLIILVPLIVGYLIPLRHKAALQLINRLLSWIVYLILFFM GISLAFLDNLASNLVAIFHYSAVSITIILLCNIAALLWLERILPWRHHHQQEKLPSRI AMALESLQLCGVVVLGFVIGLSGLSVLQHATEASEYTLIFLLFLVGIQLRNSGMTLKQ IVLNRRGMMVAVVVVASSLLGGVINAFILDLPLKTALAMASGFGWYSLSGILLTESFG PVIGSAAFFNDLARELLAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGVEIV PAAIVHGFILSLLVPLLMAFFSA" regulatory complement(1015672..1015677) /regulatory_class="ribosome_binding_site" /gene="ybjE" /locus_tag="STM0938" /note="putative RBS for ybjE; RegulonDB:STMS1H001229" gene 1015855..1017521 /gene="ybjD" /locus_tag="STM0939" /db_xref="GeneID:1252458" regulatory 1015855..1015860 /regulatory_class="ribosome_binding_site" /gene="ybjD" /locus_tag="STM0939" /note="putative RBS for ybjD; RegulonDB:STMS1H001230" CDS 1015863..1017521 /gene="ybjD" /locus_tag="STM0939" /note="similar to E. coli orf, hypothetical protein (AAC73963.1); Blastp hit to AAC73963.1 (552 aa), 89% identity in aa 1 - 552" /codon_start=1 /transl_table=11 /product="ATP-dependent endonuclease" /protein_id="NP_459916.2" /db_xref="GI:1109557605" /db_xref="GeneID:1252458" /translation="MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTL LLSPELDLYHFVREDFWFPPGDIKGREHHLHIILTFRETQPGRHRVRRYRALEACWSL CEDDFHRIFYRLEGECGADGSVMTLRSFLNSDGQPLLVENINDQVRHLVRLMPVLRLR DARFMRRIRNGTVPNVPDVEVTARQLDFLARELATRPQNLTDGQIRQGLSAMVQLLEH YFSEQGAGQARHRLMRRRSQNEQRSWRYLDIINRMIDKPGSRSHRVILLGLFSTLLQA KGTLRLHKDARPLLLVEDPETRLHPIMLSVAWQLLNLLPLQRIATTNSGELLSLTPVE HVVRLVRESSRVAAWRLGPGGLSAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWV INELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATV RSLLNNDREEEREHLTALPALDMEHFMYRQGFADVFHRVAQLPPNVPMNTRKIITKAI HRSSKPDLAIEVAMEAGRRGIDAVPPLFRKMFSRVVWLARGRAD" gene complement(1017518..1018486) /gene="ybjX" /locus_tag="STM0940" /db_xref="GeneID:1252459" CDS complement(1017518..1018486) /gene="ybjX" /locus_tag="STM0940" /note="similar to E. coli putative enzyme (AAC73964.1); Blastp hit to AAC73964.1 (330 aa), 57% identity in aa 15 - 329" /codon_start=1 /transl_table=11 /product="homolog of virK" /protein_id="NP_459917.1" /db_xref="GI:16764302" /db_xref="GeneID:1252459" /translation="MSRITIMTQLTDNTWYTSDYISPLQLFIRLTRGQLQPGKFWRKA SFRRKFLIRSLVMPRATSQLLTNLTQWPELNTLLARQPRLPIRLHRPYMAVNIKRDFA LDALCFHYQQMRQLLSREQQVSYLSQYGLNLAKFETKTGELFQLDLVSLVSLDKEGES TIVVRDAQLRILAEITFTLCRFNQQRTLFIGGLQGAANDVPHEIIQQATKACHGLFPK RIVMEALCQFAQVFQAEKIIAVSNDAHVYRSWRYMDKKTQMHADYDAFWESLGGERIK GNYYTLPLAIARKSEAEIASKKRAEYRRRYALLDSVVEQVPATFKR" gene 1018604..1019732 /gene="ybjY" /locus_tag="STM0941" /db_xref="GeneID:1252460" regulatory 1018604..1018609 /regulatory_class="ribosome_binding_site" /gene="ybjY" /locus_tag="STM0941" /note="putative RBS for ybjY; RegulonDB:STMS1H001231" CDS 1018614..1019732 /gene="ybjY" /locus_tag="STM0941" /note="similar to E. coli putative membrane protein (AAC73965.1); Blastp hit to AAC73965.1 (380 aa), 83% identity in aa 12 - 378" /codon_start=1 /transl_table=11 /product="macrolide transporter subunit MacA" /protein_id="NP_459918.1" /db_xref="GI:16764303" /db_xref="GeneID:1252460" /translation="MRAKGKKFKKRYLVIILILLVGGMAGWRMINAPLPTYQTLIVRP GDLEQSVLATGKLDALRKVDVGAQVSGQLKTLLVSIGDNVKKDQLLGVIDPDQAENQI KEVEATLMELNAERQQAAAELKLARVTLARQQQLAKTQAVSQQDLDTAATEMAVKQAR IGTIDAQIKRNRASLDTAKTNLEYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTL ADMSTMLVKAQVSEADVIHLRAGQKAWFTIAGDPQTRYEGVLKDILPTPEKINDAIFY YARFEVPNPKRILRLDMTAQVYIQLMDVKNVLIIPLAALGEPVGGNRYKVALLRNGEK REREVVIGERNDTDVEVVKGLEAGDEVIIGESRPGATP" gene 1019716..1021675 /gene="ybjZ" /locus_tag="STM0942" /db_xref="GeneID:1252461" regulatory 1019716..1019721 /regulatory_class="ribosome_binding_site" /gene="ybjY" /locus_tag="STM0941" /note="putative RBS for ybjZ; RegulonDB:STMS1H001232" CDS 1019729..1021675 /gene="ybjZ" /locus_tag="STM0942" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73966.1); Blastp hit to AAC73966.1 (648 aa), 83% identity in aa 1 - 648" /codon_start=1 /transl_table=11 /product="putative ABC superfamily (atp&memb) transport protein" /protein_id="NP_459919.1" /db_xref="GI:16764304" /db_xref="GeneID:1252461" /translation="MTALLELCNVSRSYPSGEEQVAVLKDISLQIHAGEMVAIVGVSG SGKSTLMNILGCLDKPTSGTYRVAGRDVSTLDPDALAQLRREHFGFIFQRYHLLSHLT AAQNVEIPAVYAGIERKKRQARARELLLRLGLSDRVDYPPSQLSGGQQQRVSIARALM NGGQVILADEPTGALDSHSGEEVMAILRQLRDRGHTVIIVTHDPLIAAQAERIIEIHD GKIVHNPPAQEKKREQGVDAAVVNTAPGWRQFASSFREALSMAWLAMAANKMRTLLTM LGIIIGIASVVSIVVVGDAAKQMVLADIRAMGTNTIDIHPGKDFGDDNPQYRQALKYD DLVAIQKQPWVNSATPSVSKSLRLRYGNIDIAVNANGVSGDYFNVYGMSFREGNTFNA VQQQDRAQVVVLDANTRRQLFPNKANVVGEVVLAGNMPVIVIGVAEEKPSMYGNSNLL QVWLPYSTMSDRIMGQSWLNSITVRVKDGVDSDQAEQQLTRLLTLRHGKKDFFTWNMD SVLKTAEKTTYTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARAS DVLQQFLIEAVLVCLVGGALGISLSMFIAFMLQLFLPGWEIGFSLTALASAFLCSTFT GILFGWLPARNAARLDPVDALARE" gene complement(1021805..1022040) /gene="cspD" /locus_tag="STM0943" /db_xref="GeneID:1252462" CDS complement(1021805..1022026) /gene="cspD" /locus_tag="STM0943" /note="similar to E. coli cold shock protein (AAC73967.1); Blastp hit to AAC73967.1 (74 aa), 94% identity in aa 1 - 71" /codon_start=1 /transl_table=11 /product="cold shock domain protein CspD" /protein_id="NP_459920.1" /db_xref="GI:16764305" /db_xref="GeneID:1252462" /translation="METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKA GQSVRFDVHQGPKGNHASVIVPIEAEAVA" regulatory complement(1022035..1022040) /regulatory_class="ribosome_binding_site" /gene="cspD" /locus_tag="STM0943" /note="putative RBS for cspD; RegulonDB:STMS1H001233" gene 1022350..1022670 /gene="yljA" /locus_tag="STM0944" /db_xref="GeneID:1252463" CDS 1022350..1022670 /gene="yljA" /locus_tag="STM0944" /note="similar to E. coli orf, hypothetical protein (AAC73968.1); Blastp hit to AAC73968.1 (106 aa), 97% identity in aa 1 - 106" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease adapter ClpS" /protein_id="NP_459921.1" /db_xref="GI:16764306" /db_xref="GeneID:1252463" /translation="MGKTNDWLDFDQLVEDSVRDALKPPSMYKVILVNDDYTPMEFVI DVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCT LEKA" gene 1022655..1024977 /gene="clpA" /locus_tag="STM0945" /db_xref="GeneID:1252464" regulatory 1022655..1022663 /regulatory_class="minus_35_signal" /gene="yljA" /locus_tag="STM0944" /note="putative -35_signal for clpA; RegulonDB:STMLTH004708" regulatory 1022679..1022687 /regulatory_class="minus_10_signal" /gene="clpA" /locus_tag="STM0945" /note="putative -10_signal for clpA; RegulonDB:STMLTH004708" regulatory 1022692..1022697 /regulatory_class="ribosome_binding_site" /gene="clpA" /locus_tag="STM0945" /note="putative RBS for clpA; RegulonDB:STMS1H001234" CDS 1022701..1024977 /gene="clpA" /locus_tag="STM0945" /note="similar to E. coli ATP-binding component of serine protease (AAC73969.1); Blastp hit to AAC73969.1 (758 aa), 97% identity in aa 1 - 758" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease ATP-binding subunit ClpA" /protein_id="NP_459922.1" /db_xref="GI:16764307" /db_xref="GeneID:1252464" /translation="MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREAL EACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSE VTGANVLVAIFSEQESQAAYLLRKHEVSRLDIVNFISHGTRKDEPSQSSDLGNQPTGD EQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGV GKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKD RALARRFQKIDITEPSVEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR HLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLK NLGDRLKMLVFGQDNAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL SKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEI EKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDN STDAMGEIKKVFTPEFRNRLDNIIWFDHLSGEVIHQVVDKFIVELQAQLDQKGVSLEV SQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKN ALTYDFQSAQKHKPEAAH" mobile_element 1025026..1025734 /mobile_element_type="insertion sequence:IS200_1" gene 1025163..1025627 /gene="tnpA_1" /locus_tag="STM0946" /db_xref="GeneID:1252465" regulatory 1025163..1025168 /regulatory_class="ribosome_binding_site" /gene="tnpA_1" /locus_tag="STM0946" /note="putative RBS for tnpA_1; RegulonDB:STMS1H001235" CDS 1025169..1025627 /gene="tnpA_1" /locus_tag="STM0946" /note="transposase for insertion sequence element is200 (SW:T200_SALTY)" /codon_start=1 /transl_table=11 /product="IS200/IS605 family transposase" /protein_id="NP_459923.1" /db_xref="GI:16764308" /db_xref="GeneID:1252465" /translation="MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKL CEWKNVRILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRN REFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTGRK" gene complement(1026093..1027345) /gene="IS3 family transposase" /locus_tag="STM0947" /note="Internal stops are found in the nucleotide sequence" /pseudo /db_xref="GeneID:1252466" gene complement(1027444..1027528) /gene="serW" /locus_tag="STM0949" /db_xref="GeneID:1252468" tRNA complement(1027444..1027528) /gene="serW" /locus_tag="STM0949" /product="tRNA-Ser" /db_xref="GeneID:1252468" gene complement(1027682..1028366) /locus_tag="STM0950" /db_xref="GeneID:1252469" CDS complement(1027682..1028359) /locus_tag="STM0950" /note="SlsA (gi|4324613)" /codon_start=1 /transl_table=11 /product="hydrolase" /protein_id="NP_459926.1" /db_xref="GI:16764311" /db_xref="GeneID:1252469" /translation="MSSPANFNGLRPVIDVNDSVMLLIDHQSGLFQTVGDMPMPELRA RAAALAKMATLAKMPVITTASVPQGPNGPLIPEIHANAPHAQYIARKGEINAWDNEDF VKAVKATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITLAR IVQAGVVPMDTAAVASELQGTWNREDAAAWADVYTQVFPAYQLLIESYSKAQDVVKNN EMLDSQR" regulatory complement(1028361..1028366) /regulatory_class="ribosome_binding_site" /locus_tag="STM0950" /note="putative RBS for STM0950; RegulonDB:STMS1H001238" gene complement(1028379..1029247) /locus_tag="STM0951" /db_xref="GeneID:1252470" CDS complement(1028379..1029239) /locus_tag="STM0951" /note="similar to E. coli orf, hypothetical protein (AAC76464.1); Blastp hit to AAC76464.1 (231 aa), 27% identity in aa 52 - 222, 23% identity in aa 101 - 231" /codon_start=1 /transl_table=11 /product="quercetin 2,3-dioxygenase" /protein_id="NP_459927.1" /db_xref="GI:16764312" /db_xref="GeneID:1252470" /translation="MKQITGVYTAPRPHWVGDGFPVRSLFSYQSHAQQLSPFLLLDYA GPHTFTPGNEKRGVGEHPHRGFETVTIVYSGEVEHRDSTGRGGVIGPGDVQWMTAGAG ILHEEFHSDAFTRRGGELEMVQLWVNLPMKDKMTTPGYQSITHDVIPTVTLPDNAGVV RVIAGRYEETKGPAHTFSPLNVWDMRLQRNRQLTLAQPEGWSTALVVLKGNITVNGTT PVNEAQLVVLSQQGKTLHLEASSDASVLLLSGEPLNEPIVGYGPFVMNTKQEIAEAVR DFNSGRFGQI" regulatory complement(1029242..1029247) /regulatory_class="ribosome_binding_site" /locus_tag="STM0951" /note="putative RBS for STM0951; RegulonDB:STMS1H001239" gene 1029343..1030259 /locus_tag="STM0952" /db_xref="GeneID:1252471" regulatory 1029343..1029348 /regulatory_class="ribosome_binding_site" /locus_tag="STM0952" /note="putative RBS for STM0952; RegulonDB:STMS1H001240" CDS 1029348..1030259 /locus_tag="STM0952" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC73313.1); Blastp hit to AAC73313.1 (304 aa), 31% identity in aa 1 - 291" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="NP_459928.1" /db_xref="GI:16764313" /db_xref="GeneID:1252471" /translation="MIKTDLNDFAWFVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEE RLGVRLIQRTTRQFNVTEVGQTFYEHCKAMLVEAQAAQDAIAALQVEPRGIVKLTCPV TLLHVHIGPMLAKFMARYPDVSLQLEATNRRVDVVGEGVDVAIRVRPRPFEDSDLVMR VLADRGHRLFASPDLIARMGIPSAPAELSHWPGLSLASGKHIHRWELYGPQGARAEVH FTPRMITTDMLALREAAMAGVGLVQLPVLMVKEQLAAGELVAVLEEWEPRREVIHAVF PSRRGLLPSVRALVDFLTEEYARMVEE" gene complement(1030350..1030577) /gene="infA" /locus_tag="STM0953" /db_xref="GeneID:1252472" CDS complement(1030350..1030568) /gene="infA" /locus_tag="STM0953" /note="similar to E. coli protein chain initiation factor IF-1 (AAC73970.1); Blastp hit to AAC73970.1 (72 aa), 100% identity in aa 1 - 72" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-1" /protein_id="NP_459929.1" /db_xref="GI:16764314" /db_xref="GeneID:1252472" /translation="MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNY IRILTGDKVTVELTPYDLSKGRIVFRSR" gene complement(1030496..1030885) /locus_tag="STM0954" /db_xref="GeneID:1252473" CDS complement(1030496..1030879) /locus_tag="STM0954" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459930.1" /db_xref="GI:16764315" /db_xref="GeneID:1252473" /translation="MFSAHFLLGCYNCCRRIGLAHYPAARCQVTPIVYFTVPLYVALM SIHQAVVSGKRCITRRCRVSRNHVLNLVCCVLNAQIFTYQKKFGIILPVQIMVVIPQR IRWPKKTILKCKVPFSKRYLIPCSA" regulatory complement(1030572..1030577) /regulatory_class="ribosome_binding_site" /gene="infA" /locus_tag="STM0953" /note="putative RBS for infA; RegulonDB:STMS1H001241" gene complement(1030880..1031600) /gene="aat" /locus_tag="STM0955" /db_xref="GeneID:1252474" CDS complement(1030880..1031584) /gene="aat" /locus_tag="STM0955" /EC_number="2.3.2.6" /note="similar to E. coli leucyl, phenylalanyl-tRNA-protein transferase (AAC73971.1); Blastp hit to AAC73971.1 (234 aa), 82% identity in aa 1 - 234" /codon_start=1 /transl_table=11 /product="leucyl/phenylalanyl-tRNA--protein transferase" /protein_id="NP_459931.1" /db_xref="GI:16764316" /db_xref="GeneID:1252474" /translation="MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQH GIFPWFSPGDPILWWSPDPRAVLWPEKFHLSRSMKRFHNASPYRVTLNYAFDRVIDGC ANHRDEGTWITRGIEEAYRRLHELGHAHSIEVWRDRELVGGMYGVSQGALFCGESMFS RQENASKTALLVFCAEFTRHGGKLIDCQVLNSHTASLGAIEIPRRDYLDHLAALRQQP LASRFWVPRTLFLPRK" regulatory complement(1030880..1030885) /regulatory_class="ribosome_binding_site" /locus_tag="STM0954" /note="putative RBS for STM0954; RegulonDB:STMS1H001242" regulatory complement(1031595..1031600) /regulatory_class="ribosome_binding_site" /gene="aat" /locus_tag="STM0955" /note="putative RBS for aat; RegulonDB:STMS1H001243" gene complement(1031629..1033365) /gene="cydC" /locus_tag="STM0956" /db_xref="GeneID:1252475" CDS complement(1031629..1033350) /gene="cydC" /locus_tag="STM0956" /note="ABC superfamily (atp&memb); similar to E. coli ATP-binding component of cytochrome-related transport (AAC73972.1); Blastp hit to AAC73972.1 (573 aa), 86% identity in aa 1 - 573" /codon_start=1 /transl_table=11 /product="cysteine/glutathione ABC transporter ATP-binding protein/permease CydC" /protein_id="NP_459932.1" /db_xref="GI:16764317" /db_xref="GeneID:1252475" /translation="MRALLPYLTLYKRHKWMLTLGIALAILTLLASIGLLTLSGWFLS ASAIAGFAGIYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSK LLPLSPASLARYQQGELLNRIVADVDTLDHLYLRVISPLVGAFVVIMIVTLGLSVLDV TLAITLGGIMLLTLFIMPPVFYRAGKNTGQNLTHLRGQYRQQLTSWLQGQAELTIFGA SKRYRAQMEATELQWHEAQRRQSELTALSQALMLLIGALAVMLMLWMASGGVGGNTQP GALIALFVFCALAAFEALAPVTGAFQHLGQVIASALRITELTEQKPEVTFPQAETPAP EKVTLTLRDVSFRYPDQPINALNALSLQANPGEHVAILGRTGCGKSTLLQLLTRAWDP QQGEILLNDLPLSSLSESALRRTISVVPQRVHLFSATLRDNLLLAAPNASDEALSDML RRVGLENLLEDSGLNSWLGEGGRLLSGGELRRLAIARALLHDAPLMLLDEPTEGLDAT TESEMLELLADVMREKTVLMVTHRLRGLARFDQIIVMDDGHIIERGTHAELLAGQGRY YQFKQRL" gene complement(1033351..1035117) /gene="cydD" /locus_tag="STM0957" /db_xref="GeneID:1252476" CDS complement(1033351..1035117) /gene="cydD" /locus_tag="STM0957" /note="Zn sensitive; ABC superfamily (atp&memb); similar to E. coli ATP-binding component of cytochrome-related transport, Zn sensitive (AAC73973.1); Blastp hit to AAC73973.1 (588 aa), 90% identity in aa 1 - 588" /codon_start=1 /transl_table=11 /product="cysteine/glutathione ABC transporter permease/ATP-binding protein CydD" /protein_id="NP_459933.1" /db_xref="GI:16764318" /db_xref="GeneID:1252476" /translation="MNKTRQKELTRWLKQQSVISQRWLNISRLLGFMSGVLIVAQAWI MARILQHMIMENIPREALLLPFILLILVFVLRAWVVWLRERVGFHAGQHIRFEIRRQV LDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVCVPLLIVAAIFP SNWAAALILLGTAPLIPLFMAMVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIF GRGEAETESIRAASQDFRQRTMEVLRLAFLSSGVLEFFTSLSIALVAVYFGFSYLGEL NFGHYGTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFLETPLAH PARGEVELAENEPVTIDAVNLIITSPEGKTLAGPLNFSLAAGERAVLVGRSGSGKSSL LNVLSGFLSYQGSLRINGVELRDLSPESWRQHLSWVGQNPQLPAATLRENVLLARPDA SEQELYAALDAAWVSEFLPLLPQGVDTPLGNHASRLSVGQAQRVAVARALLNPCQLLL LDEPAASLDAHSEQRVMQALKAASKRQTTLMVTHQLEDLADWDAIWVMQDGAIVEQGS YAELSAANGAFATLLAHRQEDI" regulatory complement(1033360..1033365) /regulatory_class="ribosome_binding_site" /gene="cydC" /locus_tag="STM0956" /note="putative RBS for cydC; RegulonDB:STMS1H001244" gene complement(1035231..1036210) /gene="trxB" /locus_tag="STM0958" /db_xref="GeneID:1252477" CDS complement(1035231..1036199) /gene="trxB" /locus_tag="STM0958" /EC_number="1.8.1.9" /note="similar to E. coli thioredoxin reductase (AAC73974.1); Blastp hit to AAC73974.1 (321 aa), 96% identity in aa 1 - 320" /codon_start=1 /transl_table=11 /product="thioredoxin-disulfide reductase" /protein_id="NP_459934.1" /db_xref="GI:16764319" /db_xref="GeneID:1252477" /translation="MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL TTTTEVENWPGDPNDLTGPLLMERMHEHAAKFETEIIFDHINNVDLQNRPFRLTGDSA EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE EALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGV TGLRLRDTQQSDNIETLDIAGLFVAIGHSPNTALFEGQLELENGYIKVQSGTHGNATQ TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADASK" regulatory complement(1036205..1036210) /regulatory_class="ribosome_binding_site" /gene="trxB" /locus_tag="STM0958" /note="putative RBS for trxB; RegulonDB:STMS1H001245" protein_bind 1036409..1036423 /note="putative binding site for Lrp, RegulonDB: STMS1H000263" /bound_moiety="Lrp" protein_bind 1036519..1036533 /note="putative binding site for Lrp, RegulonDB: STMS1H000260" /bound_moiety="Lrp" gene 1036670..1037239 /gene="lrp" /locus_tag="STM0959" /db_xref="GeneID:1252478" regulatory 1036670..1036678 /regulatory_class="minus_35_signal" /gene="lrp" /locus_tag="STM0959" /note="putative -35_signal for lrp; RegulonDB:STMLTH004709" regulatory 1036698..1036706 /regulatory_class="minus_10_signal" /gene="lrp" /locus_tag="STM0959" /note="putative -10_signal for lrp; RegulonDB:STMLTH004709" regulatory 1036729..1036734 /regulatory_class="ribosome_binding_site" /gene="lrp" /locus_tag="STM0959" /note="putative RBS for lrp; RegulonDB:STMS1H001246" CDS 1036745..1037239 /gene="lrp" /locus_tag="STM0959" /note="mediator of of leucine response (AsnC family); leucine-responsive regulatory protein. (SW:LRP_SALTY)" /codon_start=1 /transl_table=11 /product="leucine-responsive transcriptional regulator" /protein_id="NP_459935.1" /db_xref="GI:16764320" /db_xref="GeneID:1252478" /translation="MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTP CLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVQKLEE IQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLV IKTR" gene 1037360..1041429 /gene="ftsK" /locus_tag="STM0960" /db_xref="GeneID:1252479" regulatory 1037360..1037365 /regulatory_class="ribosome_binding_site" /gene="ftsK" /locus_tag="STM0960" /note="putative RBS for ftsK; RegulonDB:STMS1H001247" CDS 1037374..1041429 /gene="ftsK" /locus_tag="STM0960" /note="required for cell division and chromosome partitioning; similar to E. coli cell division protein (AAC73976.1); Blastp hit to AAC73976.1 (1329 aa), 63% identity in aa 263 - 843" /codon_start=1 /transl_table=11 /product="DNA translocase FtsK" /protein_id="NP_459936.1" /db_xref="GI:16764321" /db_xref="GeneID:1252479" /translation="MSQEYTEDKDVTLTKLSSGRRLLEALLILIALFAVWLMAALLSF NPSDPSWSQTAWHEPIHNLGGAPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQS TDDYIDYFAVSLRLIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHS SGGTIMLLCIWAAGLTLFTGWSWVSIAEKLGGWLLNILTFASNRTRRDDTWVDDEEYD DEYDEETDGVQRESRRARILRGALARRKRLAEKFSNPRGRQTDAALFSGKRMDDDEDI QYSARGVAADPDDVLFSGNRATQPEYDEYDPLLNGHSVTEPVAAAAAATAVTQTWAAS ADPIMQTPPMPGAEPVVAQPTVEWQPVPGPQTGEPVIAPAPEGYQPHPQYAQPQEAQS APWQQPVPVASAPQYAATPATAAEYDSLAPQETQPQWQPEPTHQPTPVYQPEPIAAEP SHMPPPVIEQPVATEPEPDTEETRPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPV KENVPVKPTVSVAPSIPPVEAVAAAASLDAGIKSGALAAGAAAAAPAFSLATGGAPRP QVKEGIGPQLPRPNRVRVPTRRELASYGIKLPSQRIAEEKAREAERNQYETGAQLTDE EIDAMHQDELARQFAQSQQHRYGETYQHDTQQAEDDDTAAEAELARQFAASQQQRYSG EQPAGAQPFSLDDLDFSPMKVLVDEGPHEPLFTPGVMPESTPVQQPVAPQPQPQYQQP QQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAP QPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPTAPQDSLIHPLLMRNGDSRPLQ RPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITR FELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLRE VLDNAKFRENPSPLTVVLGKDIAGDPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSM LYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWSVNEMERRYKL MSALGVRNLAGYNEKIAEAARMGRPIPDPYWKPGDSMDVQHPVLEKLPYIVVLVDEFA DLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSS KIDSRTILDQGGAESLLGMGDMLYSGPNSTMPVRVHGAFVRDQEVHAVVQDWKARGRP QYVDGITSDSESEGGGGGFDGGEELDALFDQAVNFVTQKRKASISGVQRQFRIGYNRA ARIIEQMEAQGIVSAQGHNGNREVLAPPPFE" gene 1041561..1042183 /gene="lolA" /locus_tag="STM0961" /db_xref="GeneID:1252480" regulatory 1041561..1041566 /regulatory_class="ribosome_binding_site" /gene="lolA" /locus_tag="STM0961" /note="putative RBS for lolA; RegulonDB:STMS1H001248" CDS 1041569..1042183 /gene="lolA" /locus_tag="STM0961" /note="affects translocation of lipoproteins from inner membrane to outer membrane; similar to E. coli periplasmic protein effects translocation of lipoproteins from inner membrane to outer (AAC73977.1); Blastp hit to AAC73977.1 (204 aa), 94% identity in aa 1 - 204" /codon_start=1 /transl_table=11 /product="periplasmic protein" /protein_id="NP_459937.1" /db_xref="GI:16764322" /db_xref="GeneID:1252480" /translation="MMKKMAIACALLSSVVASSVWADAASSLKSRLDKVSSFHATFTQ KVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATW LKDATGNTPFMLIARNQASDWQQYNIKQDGDNFVLTPKASNGNLKQFTINVGRDGTIH QFSAVEQDDQRSAYQLKSQQNGAVDPSKFTFTPPQGVTIDDQRK" gene 1042183..1043536 /gene="ycaJ" /locus_tag="STM0962" /db_xref="GeneID:1252481" regulatory 1042183..1042188 /regulatory_class="ribosome_binding_site" /gene="ycaJ" /locus_tag="STM0962" /note="putative RBS for ycaJ; RegulonDB:STMS1H001249" CDS 1042193..1043536 /gene="ycaJ" /locus_tag="STM0962" /note="similar to E. coli putative polynucleotide enzyme (AAC73978.1); Blastp hit to AAC73978.1 (447 aa), 97% identity in aa 1 - 447" /codon_start=1 /transl_table=11 /product="recombination factor protein RarA" /protein_id="NP_459938.1" /db_xref="GI:16764323" /db_xref="GeneID:1252481" /translation="MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRA IEAGHLHSMILWGPPGTGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNR NAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY LLKSLTTDDIEQVLDQAMQDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMM ADMAEADDSGKRVLLPALLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALY WYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIA QAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYA HDEPNAYAAGEVYFPPEIAQTRYYHPTNRGLEGKIGEKLAWLAEQDQNSPTKRYR" gene 1043785..1045087 /gene="serS" /locus_tag="STM0963" /db_xref="GeneID:1252482" regulatory 1043785..1043790 /regulatory_class="ribosome_binding_site" /gene="serS" /locus_tag="STM0963" /note="putative RBS for serS; RegulonDB:STMS1H001250" CDS 1043795..1045087 /gene="serS" /locus_tag="STM0963" /EC_number="6.1.1.11" /note="also charges selenocystein tRNA with serine; similar to E. coli serine tRNA synthetase; also charges selenocystein tRNA with serine (AAC73979.1); Blastp hit to AAC73979.1 (430 aa), 97% identity in aa 1 - 430" /codon_start=1 /transl_table=11 /product="serine--tRNA ligase" /protein_id="NP_459939.1" /db_xref="GI:16764324" /db_xref="GeneID:1252482" /translation="MLDPNLLRNEPDAVAEKLARRGFKLDVDKLRALEERRKVLQVNT ENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDTLLAEIRDIALT IPNLPADEVPVGKDENDNVEVSRWGTPREFDFEIRDHVTLGEMHSGLDFAAAVKLTGS RFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNHDTLYGTGQLPKFAGDLF HTRPLEEEADSSNYALIPTAEVPLTNLVRDEIIDEDQLPIKMTAHTPCFRSEAGSYGR DTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMG FGACKTYDLEVWVPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSG LAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG" protein_bind 1044965..1044985 /gene="serS" /locus_tag="STM0963" /note="putative binding site for NarL, RegulonDB: STMS1H000312" /bound_moiety="NarL" protein_bind 1044994..1045003 /gene="serS" /locus_tag="STM0963" /note="putative binding site for FNR, RegulonDB: STMS1H000162" /bound_moiety="FNR" protein_bind 1045085..1045105 /note="putative binding site for NarL, RegulonDB: STMS1H000317" /bound_moiety="NarL" protein_bind 1045163..1045183 /note="putative binding site for NarL, RegulonDB: STMS1H000308" /bound_moiety="NarL" gene 1045269..1047768 /gene="dmsA" /locus_tag="STM0964" /db_xref="GeneID:1252483" regulatory 1045269..1045277 /regulatory_class="minus_35_signal" /gene="dmsA" /locus_tag="STM0964" /note="putative -35_signal for dmsA; RegulonDB:STMLTH004710" regulatory 1045296..1045304 /regulatory_class="minus_10_signal" /gene="dmsA" /locus_tag="STM0964" /note="putative -10_signal for dmsA; RegulonDB:STMLTH004710" regulatory 1045307..1045312 /regulatory_class="ribosome_binding_site" /gene="dmsA" /locus_tag="STM0964" /note="putative RBS for dmsA; RegulonDB:STMS1H001251" CDS 1045324..1047768 /gene="dmsA" /locus_tag="STM0964" /EC_number="1.8.99.-" /note="similar to E. coli anaerobic dimethyl sulfoxide reductase subunit A (AAC73980.1); Blastp hit to AAC73980.1 (785 aa), 93% identity in aa 1 - 784" /codon_start=1 /transl_table=11 /product="dimethylsulfoxide reductase subunit A" /protein_id="NP_459940.1" /db_xref="GI:16764325" /db_xref="GeneID:1252483" /translation="MKTKIPDAVLAAEVSRRGLVKTTAIGGLAMASSAFTLPFTRIAN AAEAISPAKTGEKVVWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGNDDYDGLHQVR ACLRGRSMRRRVYNPDRLKYPMKRVGARGEGKFERISWDEAYDIIATNMQRLIKEYGN ESIYLNYGTGTLGGTLTRSWPPGKTLVARLMNCCGGYLNHYGDYSSAQIAAGLNYTYG GWADGNSPSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTD TGAGREDEWIPIRPGTDAALVNGLAYVLITENMVDQPFLDKYCVGYDEKTLPASAPKN GHYKAYILGQGKDGIAKTPEWAAQITGIPADRIIKLAREIGSAKPAYICQGWGPQRHA NGEIATRAISMLAILTGNVGINGGNSGAREGSYALPFERMPTLENPVETSISMFMWTD AIERGPEMTALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCEM IVVIDCHMTSSAKYADILLPDCTASEQMDFALDASCGNMSYVIFTDQAIKPRFECKTI YEMTSELAKRLGVEQQFTEGRTQEEWMRHLYEQSRKSIPNLPTFEEFRKQGIFKQRDP EGHHVAYKDFREDPQANPLTTPSGKIEIYSQALADIAATWELPEGDVIDPLPIYTPGF ENYNDPLTDKFPLQLTGFHYKARVHSTYGNVDVLKAACRQEMWINPMDAQKRGINNGD KVRIFNDRGEVHIEAKVTPRMMPGVVALGEGAWYDPDAKRVDQGGCINVLTTQRPSPL AKGNPSHTNLVQVEKA" gene 1047767..1048396 /gene="dmsB" /locus_tag="STM0965" /db_xref="GeneID:1252484" regulatory 1047767..1047772 /regulatory_class="ribosome_binding_site" /gene="dmsB" /locus_tag="STM0965" /note="putative RBS for dmsB; RegulonDB:STMS1H001252" CDS 1047779..1048396 /gene="dmsB" /locus_tag="STM0965" /EC_number="1.8.99.-" /note="similar to E. coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); Blastp hit to AAC73981.1 (205 aa), 96% identity in aa 1 - 205" /codon_start=1 /transl_table=11 /product="dimethylsulfoxide reductase, chain B" /protein_id="NP_459941.1" /db_xref="GI:16764326" /db_xref="GeneID:1252484" /translation="MTTQYGFFIDSSRCTGCKTCELACKDYKDLTPDVSFRRIYEYAG GDWQEDNGVWHQNVFAYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGC RYCHMACPYGAPQYNAAKGHMTKCDGCYDRVAEGKKPICVESCPLRALDFGPIDELRK KHGELAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPKEV" gene 1048385..1049261 /gene="dmsC" /locus_tag="STM0966" /db_xref="GeneID:1252485" regulatory 1048385..1048390 /regulatory_class="ribosome_binding_site" /gene="dmsB" /locus_tag="STM0965" /note="putative RBS for dmsC; RegulonDB:STMS1H001253" CDS 1048398..1049261 /gene="dmsC" /locus_tag="STM0966" /EC_number="1.8.99.-" /note="similar to E. coli anaerobic dimethyl sulfoxide reductase subunit C (AAC73982.1); Blastp hit to AAC73982.1 (287 aa), 89% identity in aa 1 - 287" /codon_start=1 /transl_table=11 /product="dimethyl sulfoxide reductase" /protein_id="NP_459942.1" /db_xref="GI:16764327" /db_xref="GeneID:1252485" /translation="MGSGWHEWPLMIFTVFGQCVAGGFIVLALALMKGDLRAETQQRV IACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSNEIASGSVFFAVGGIGW LLAVLKKLPPALRTLWLIITMVLGVVFVWMMVRVYNSIDTVPTWYSVWTPLGFFLTLF MGGPLLGYLLLRIAGVNGWAMRLLPAVSVLALVVIAIMVAMQGAELATIHSSIQQASA LVPDYGSLMAWRMVLLAAALCCWIVPQLKGYQPAVPLLSVAFILMLAGELIGRGVFYG LHMTVGMAVAS" gene 1049598..1050759 /gene="ycaD" /locus_tag="STM0968" /db_xref="GeneID:1252486" regulatory 1049598..1049603 /regulatory_class="ribosome_binding_site" /gene="ycaD" /locus_tag="STM0968" /note="putative RBS for ycaD; RegulonDB:STMS1H001255" CDS 1049611..1050759 /gene="ycaD" /locus_tag="STM0968" /note="similar to E. coli putative transport (AAC73984.1); Blastp hit to AAC73984.1 (382 aa), 88% identity in aa 1 - 382" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_459943.1" /db_xref="GI:16764328" /db_xref="GeneID:1252486" /translation="MSTYTRPVMLLLCGLLLLTLAIAVLNTLVPLWLAQANLPTWQVG MVSSSYFTGNLVGTLFTGYLIKRIGFNRSYYLASLIFAAGCVGLGVMVGFWSWMSWRF IAGIGCAMIWVVVESALMCSGTSHNRGRLLAAYMMVYYMGTFLGQLLVSKVSGELLHV LPWVTGMILAGILPLLFTRIVNQQTQARHSSSISAMLKLRQARLGVNGCIISGIVLGS LYGLMPLYLKHQGMANASIGFWMAVLVSAGILGQWPMGRLADKFGRLLVLRVQVFVVI LGSIAMLTQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGS LLGPSFAAMLMQNYSDNLLFIMIASVSFIYLLMLLRNAGQTPNPVAHI" gene 1050965..1052398 /gene="ycaM" /locus_tag="STM0969" /db_xref="GeneID:1252487" regulatory 1050965..1050970 /regulatory_class="ribosome_binding_site" /gene="ycaM" /locus_tag="STM0969" /note="putative RBS for ycaM; RegulonDB:STMS1H001256" CDS 1050977..1052398 /gene="ycaM" /locus_tag="STM0969" /note="similar to E. coli putative transport (AAC73985.1); Blastp hit to AAC73985.1 (540 aa), 93% identity in aa 68 - 536" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_459944.1" /db_xref="GI:16764329" /db_xref="GeneID:1252487" /translation="MPNVQEKQLRWYNIALMSFITVWGFGNVVNNYANQGLVVVFSWV FIFALYFIPYALIVGQLGSTFKEGKGGVSTWIKHTMGPGLAYLAAWTYWVVHIPYLAQ KPQAILIALGWALKGDGSLIKEYTVVALQGLTLALFVFFMWVASRGMKSLKVVGSVAG IAMFIMSILYVVMAVTAPAITNVEIATTNITWQSFIPHIDFTYITTISMLVFAVGGAE KISPYVNQTRNPGKEFPKGMLFLAVMVAVCAILGSLAMGMMFDSRHIPDDLMTNGQYY AFQKLGEYYHMGNSLMVIYAIANTLGQIAALVFSIDAPLKVLLGDADTKYIPQRLCRT NASGTPVNGYLLTLVLVAILIMLPTLGIGDMNNLYKWLLNLNSVVMPLRYLWVFVAFI AVIRLAQKYKPEYVFIRNRALALTVGIWCFAFTAFACLTGIFPKMEAFTPEWTFQLTL NIVTPFVLVGLGLIFPLLARRNT" gene complement(1052691..1053515) /gene="pflA" /locus_tag="STM0970" /db_xref="GeneID:1252488" CDS complement(1052691..1053515) /gene="pflA" /locus_tag="STM0970" /EC_number="1.97.1.4" /note="similar to E. coli pyruvate formate lyase activating enzyme 1 (AAC73988.1); Blastp hit to AAC73988.1 (246 aa), 97% identity in aa 3 - 246" /codon_start=1 /transl_table=11 /product="pyruvate formate lyase activating enzyme 1" /protein_id="NP_459945.3" /db_xref="GI:1109557606" /db_xref="GeneID:1252488" /translation="MLFRASRSDMSNLTNCITNESVAVTADKKPVIGRIHSFESCGTV DGPGIRFITFFQGCLMRCLYCHNRDTWDTHGGKEITVEDLMKEVVTYRHFMNASGGGV TASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDLK QMNDEIHQNLVGVSNHRTLEFAQYLSKKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRD MGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKVMY" gene complement(1053607..1053936) /locus_tag="STM0971" /db_xref="GeneID:1252489" CDS complement(1053607..1053933) /locus_tag="STM0971" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459946.1" /db_xref="GI:16764331" /db_xref="GeneID:1252489" /translation="MRVECDARRWTAHNVLWTHLNYVENYFRSDHNKTAPTIRKKRRI INSKTRALWMIHLQYVLRLRRYELMNEPEFLAVRVMQHRFAVYFILNRGKIAPLQHIL EQPHIL" regulatory complement(1053931..1053936) /regulatory_class="ribosome_binding_site" /locus_tag="STM0971" /note="putative RBS for STM0971; RegulonDB:STMS1H001257" gene 1054059..1055023 /locus_tag="STM0972" /db_xref="GeneID:1252490" regulatory 1054059..1054064 /regulatory_class="ribosome_binding_site" /locus_tag="STM0972" /note="putative RBS for STM0972; RegulonDB:STMS1H001258" CDS 1054064..1055023 /locus_tag="STM0972" /codon_start=1 /transl_table=11 /product="pathogenicity island 1 protein SopD2" /protein_id="NP_459947.1" /db_xref="GI:16764332" /db_xref="GeneID:1252490" /translation="MPVTLSFGNRHNYEINHSRLARLMSPDKEEALYMGVWDRFKDCF RTHKKQEVLEVLYTLIHGCERENQAELNVDITGMEKIHAFTQLKEYANPSQQDRFVMR FDMNQTQVLFEIDGKVIDKCNLHRLLNVSENCIFKVMEEDEEELFLKICIKYGEKISR YPELLEGFANKLKDAVNEDDDVKDEVYKLMRSGEDRKMECVEWNGTLTEEEKNKLRCL QMGSFNITTQFFKIGYWELEGEVLFDMVHPTLSYLLQAYKPSLSSDLIETNTMLFSDV LNKDYDDYQNNKREIDAILRRIYRSHNNTLFISEKSSCRNMLI" gene complement(1055099..1057510) /gene="pflB" /locus_tag="STM0973" /db_xref="GeneID:1252491" CDS complement(1055099..1057381) /gene="pflB" /locus_tag="STM0973" /EC_number="2.3.1.54" /note="similar to E. coli formate acetyltransferase 1 (AAC73989.1); Blastp hit to AAC73989.1 (760 aa), 96% identity in aa 1 - 760" /codon_start=1 /transl_table=11 /product="formate C-acetyltransferase" /protein_id="NP_459948.1" /db_xref="GI:16764333" /db_xref="GeneID:1252491" /translation="MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFL AGATDATTKLWDSVMEGVKQENRTHAPVDFDTSVASTITSHDAGYINKALEKIVGLQT EAPLKRAIIPFGGIKMVEGSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRC RKSGVLTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKFAQFTSLQSDLENGVNLEATI RLREEIAEQHRALGQIKEMAAKYGCDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMS FGRVSTFLDAYIERDLKAGKITEQDAQEMIDHLVMKLRMVRFLRTPEYDELFSGDPIW ATESIGGMGVDGRTLVTKNSFRFLNTLYTMGPSPEPNITVLWSEKLPLNFKKFAAKVS IDTSSLQYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGG VDEKLKMQVGPKSEPIKGDVLNFDEVMDRMDHFMDWLAKQYVTALNVIHYMHDKYSYE ASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAIDFEIEGEYPQ FGNNDARVDDMAVDLVERFMKKIQKLTTYRGAIPTQSVLTITSNVVYGKKTGNTPDGR RAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVR KTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMEHPEKYPQLTIRVSGYAVRF NSLTKEQQQDVITRTFTQTM" regulatory complement(1057390..1057395) /regulatory_class="ribosome_binding_site" /gene="pflB" /locus_tag="STM0973" /note="putative RBS for pflB; RegulonDB:STMS1H001259" gene complement(1057441..1058474) /gene="focA" /locus_tag="STM0974" /db_xref="GeneID:1252492" CDS complement(1057441..1058298) /gene="focA" /locus_tag="STM0974" /note="formate channel 1; putative FNT family member; similar to E. coli probable formate transporter (formate channel 1) (AAC73990.1); Blastp hit to AAC73990.1 (285 aa), 95% identity in aa 1 - 285" /codon_start=1 /transl_table=11 /product="formate transporter FocA" /protein_id="NP_459949.1" /db_xref="GI:16764334" /db_xref="GeneID:1252492" /translation="MKADNPFDLLLPAAMAKVAEEAGVYKATKHPLKTFYLAITAGVF ISIAFVFYITATTGTGAMPYGMAKLIGGICFSLGLILCVICGADLFTSTVLIVVAKAS GRITWGQLAKNWLNVYFGNLIGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKMHHT FIEAVCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMIP MGIVIRDFATPEFWTAVGSSPESFSHLTVMSFITDNLIPVTIGNIIGGGLLVGLTYWV IYLRGNEHH" regulatory complement(1057483..1057491) /regulatory_class="minus_10_signal" /gene="focA" /locus_tag="STM0974" /note="putative -10_signal for pflB; RegulonDB:STMLTH004711" regulatory complement(1057502..1057510) /regulatory_class="minus_35_signal" /gene="focA" /locus_tag="STM0974" /note="putative -35_signal for pflB; RegulonDB:STMLTH004711" regulatory complement(1058305..1058310) /regulatory_class="ribosome_binding_site" /gene="focA" /locus_tag="STM0974" /note="putative RBS for focA; RegulonDB:STMS1H001260" protein_bind complement(1058416..1058427) /gene="focA" /locus_tag="STM0974" /note="putative binding site for ArcA, RegulonDB: STMS1H000024" /bound_moiety="ArcA" regulatory complement(1058447..1058455) /regulatory_class="minus_10_signal" /gene="focA" /locus_tag="STM0974" /note="putative -10_signal for focA; RegulonDB:STMLTH004712" regulatory complement(1058466..1058474) /regulatory_class="minus_35_signal" /gene="focA" /locus_tag="STM0974" /note="putative -35_signal for focA; RegulonDB:STMLTH004712" protein_bind complement(1058525..1058545) /note="putative binding site for NarL, RegulonDB: STMS1H000307" /bound_moiety="NarL" protein_bind complement(1058531..1058551) /note="putative binding site for CRP, RegulonDB: STMS1H000076" /bound_moiety="CRP" protein_bind complement(1058545..1058569) /note="putative binding site for FNR, RegulonDB: STMS1H000158" /bound_moiety="FNR" protein_bind complement(1058593..1058613) /note="putative binding site for NarL, RegulonDB: STMS1H000321" /bound_moiety="NarL" protein_bind complement(1058617..1058642) /note="putative binding site for IHF, RegulonDB: STMS1H000226" /bound_moiety="IHF" protein_bind complement(1058623..1058685) /note="putative binding site for ArcA, RegulonDB: STMS1H000022" /bound_moiety="ArcA" protein_bind complement(1058633..1058653) /note="putative binding site for NarL, RegulonDB: STMS1H000311" /bound_moiety="NarL" protein_bind complement(1058635..1058697) /note="putative binding site for ArcA, RegulonDB: STMS1H000014" /bound_moiety="ArcA" gene complement(1058703..1060463) /gene="ycaO" /locus_tag="STM0975" /db_xref="GeneID:1252493" CDS complement(1058703..1060463) /gene="ycaO" /locus_tag="STM0975" /note="similar to E. coli orf, hypothetical protein (AAC73991.1); Blastp hit to AAC73991.1 (589 aa), 93% identity in aa 4 - 589" /codon_start=1 /transl_table=11 /product="ribosomal protein S12 methylthiotransferase accessory factor YcaO" /protein_id="NP_459950.1" /db_xref="GI:16764335" /db_xref="GeneID:1252493" /translation="MTQTFIPGKDAALEDSIARFQQKLLDLGFHIEEASWLNPVPNVW SVHIRDKECALCFTNGKGATKKAALASALGEYFERLSTNYFFADFWLGETVANGPFVH YPNEKWFPLTENDDVPEGLLDARLRAFYDPENELTGSQLIDLQSGNEARGVCGLPFTR QSDNQTVYIPMNIIGNLYVSNGMSAGNTRNEARVQGLSEVFERYVKNRIIAESISLPE IPAEVMARYPAVMESIATLEAEGFPIFAYDGSLGGKYPVICVVLFNPANGTCFASFGA HPDFGVALERTVTELLQGRGLKDLDVFTPPTFDDEEVAEHTNLETHFIDSSGLISWDL FKQDADYPFTDWSFSGTTEEEFATLMAIFAAEDKEVYIADYEHLGVYACRIIVPGMSD IYPAEDLWLANNNMGSHLRETLLSLPGSAWNKEDYLNLIEQLDEEGFDDFTRVRELLG LATGADNGWYTLRVGELKAMLALAGGDLEQALIWTEWTMEFNSSVFSPTRANYYRCLQ TLLLLSQEDARQPLQYLNAFIKMYGAEAVEAASAALSGEAAFYGLPAVDHDLQAFPAH QSLLKAYDKLQRAKAAYWSK" gene 1060583..1061292 /gene="ycaP" /locus_tag="STM0976" /db_xref="GeneID:1252494" regulatory 1060583..1060588 /regulatory_class="ribosome_binding_site" /gene="ycaP" /locus_tag="STM0976" /note="putative RBS for ycaP; RegulonDB:STMS1H001261" CDS 1060600..1061292 /gene="ycaP" /locus_tag="STM0976" /note="similar to E. coli orf, hypothetical protein (AAC73992.1); Blastp hit to AAC73992.1 (230 aa), 86% identity in aa 1 - 229" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459951.1" /db_xref="GI:16764336" /db_xref="GeneID:1252494" /translation="MKAFDLQRMALDNVPVAFLGEVALRSFYTFVLVFLFLKVTGRRG VRQMSLFEVLIILTLGSAAGDVAFYDDVPMLPVLVVFITLALLYRLVMWLMAHSEKLE DLLEGKSVVIVEDGELAWEKLQRSNMTEFEFFMELRLNGVEQLGQVRLAILETNGQIS VYFFENKDVKPGLSILPEHCTPRFIVAPEAGDYACVRCSEVIRMNAGEKQLCPRCANP EWTKASRAKRVV" gene 1061470..1062566 /gene="serC" /locus_tag="STM0977" /db_xref="GeneID:1252495" regulatory 1061470..1061475 /regulatory_class="ribosome_binding_site" /gene="serC" /locus_tag="STM0977" /note="putative RBS for serC; RegulonDB:STMS1H001262" CDS 1061478..1062566 /gene="serC" /locus_tag="STM0977" /EC_number="2.6.1.52" /note="(SW:SERC_SALTY)" /codon_start=1 /transl_table=11 /product="phosphoserine transaminase" /protein_id="NP_459952.1" /db_xref="GI:16764337" /db_xref="GeneID:1252495" /translation="MAQVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGK EFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYW AASAIKEAKKYCAPQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAID ETPDFGPEVVVTADFSSTILSAPLDVSRYGVIYAGAQKNIGPAGLTLVIVREDLLGKA HESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELL YGVIDNSDFYRNDVAQANRSRMNVPFQLADNTLDKVFLEESFAAGLHALKGHRVVGGM RASIYNAMPIEGVKALTDFMIDFERRHG" gene 1062637..1063920 /gene="aroA" /locus_tag="STM0978" /db_xref="GeneID:1252496" CDS 1062637..1063920 /gene="aroA" /locus_tag="STM0978" /EC_number="2.5.1.19" /note="3-phosphoshikimate 1-carboxyvinyltransferase. (SW:AROA_SALTY)" /codon_start=1 /transl_table=11 /product="3-phosphoshikimate 1-carboxyvinyltransferase" /protein_id="NP_459953.1" /db_xref="GI:16764338" /db_xref="GeneID:1252496" /translation="MESLTLQPIARVDGAINLPGSKSVSNRALLLAALACGKTALTNL LDSDDVRHMLNALSALGINYTLSADRTRCDITGNGGALRAPGALELFLGNAGTAMRPL AAALCLGQNEIVLTGEPRMKERPIGHLVDSLRQGGANIDYLEQENYPPLRLRGGFTGG DIEVDGSVSSQFLTALLMTAPLAPKDTIIRVKGELVSKPYIDITLNLMKTFGVEIANH HYQQFVVKGGQQYHSPGRYLVEGDASSASYFLAAGAIKGGTVKVTGIGRKSMQGDIRF ADVLEKMGATITWGDDFIACTRGELHAIDMDMNHIPDAAMTIATTALFAKGTTTLRNI YNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPAKLQHADIGTYNDHRMAMCFS LVALSDTPVTILDPKCTAKTFPDYFEQLARMSTPA" gene 1064050..1064824 /gene="ycaL" /locus_tag="STM0979" /db_xref="GeneID:1252497" regulatory 1064050..1064055 /regulatory_class="ribosome_binding_site" /gene="ycaL" /locus_tag="STM0979" /note="putative RBS for ycaL; RegulonDB:STMS1H001263" CDS 1064063..1064824 /gene="ycaL" /locus_tag="STM0979" /EC_number="3.4.24.-" /note="similar to E. coli putative heat shock protein (AAC73995.1); Blastp hit to AAC73995.1 (262 aa), 69% identity in aa 9 - 262" /codon_start=1 /transl_table=11 /product="metalloprotease" /protein_id="NP_459954.1" /db_xref="GI:16764339" /db_xref="GeneID:1252497" /translation="MKNKSLLLAVAISATLLAGCKNGVNGNLIASSGMSTYKAATLSD ADVKALSNNACKQMDSENQLAGSKSKYTKRLSKIAKALGNNIDGTPVSYKVYMTSDIN AWAMANGCVRVYSGLMDLMTDNEIEGVLGHELGHVSLGHSRKAMQTAYATLAARDAIS ATSGVAAQLSQSQLGDLAEGVINSAFSRSQESDADDFSYDLLKKRGINTQGLVTAFDK FATMDAGHAKSLMDSHPASADRAQHMRDRIAEDKK" gene 1064803..1065680 /gene="cmk" /locus_tag="STM0980" /db_xref="GeneID:1252498" regulatory 1064803..1064811 /regulatory_class="minus_35_signal" /gene="ycaL" /locus_tag="STM0979" /note="putative -35_signal for cmk; RegulonDB:STMLTH004713" regulatory 1064831..1064839 /regulatory_class="minus_10_signal" /gene="cmk" /locus_tag="STM0980" /note="putative -10_signal for cmk; RegulonDB:STMLTH004713" regulatory 1064985..1064990 /regulatory_class="ribosome_binding_site" /gene="cmk" /locus_tag="STM0980" /note="putative RBS for cmk; RegulonDB:STMS1H001264" CDS 1064997..1065680 /gene="cmk" /locus_tag="STM0980" /EC_number="2.7.4.14" /note="similar to E. coli cytidylate kinase (AAC73996.1); Blastp hit to AAC73996.1 (227 aa), 97% identity in aa 1 - 227" /codon_start=1 /transl_table=11 /product="cytidylate kinase" /protein_id="NP_459955.1" /db_xref="GI:16764340" /db_xref="GeneID:1252498" /translation="MTAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA LAALHHHVDLASEDALVPLASHLDVRFVSTDGNLEVILEGEDVSGEIRTQEVANAASQ VAAFPRVREALLRRQRAFREAPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRML QLQENGFSVNFERLLAEIKERDDRDRHRAVAPLVPAADALVLDSTRLSIEQVIEKALQ YARQKLALA" gene 1065699..1067467 /gene="rpsA" /locus_tag="STM0981" /db_xref="GeneID:1252499" regulatory 1065699..1065707 /regulatory_class="minus_35_signal" /gene="rpsA" /locus_tag="STM0981" /note="putative -35_signal for rpsA; RegulonDB:STMLTH004714" regulatory 1065726..1065734 /regulatory_class="minus_10_signal" /gene="rpsA" /locus_tag="STM0981" /note="putative -10_signal for rpsA; RegulonDB:STMLTH004714" regulatory 1065781..1065786 /regulatory_class="ribosome_binding_site" /gene="rpsA" /locus_tag="STM0981" /note="putative RBS for rpsA; RegulonDB:STMS1H001265" CDS 1065794..1067467 /gene="rpsA" /locus_tag="STM0981" /note="similar to E. coli 30S ribosomal subunit protein S1 (AAC73997.1); Blastp hit to AAC73997.1 (557 aa), 99% identity in aa 1 - 557" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S1" /protein_id="NP_459956.1" /db_xref="GI:16764341" /db_xref="GeneID:1252499" /translation="MTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKS ESAIPAEQFKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAY EDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLD QKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLL HITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPE GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLD IDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKK GAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDDVEAKFTGV DRKNRAISLSVRAKDEADEKDAIATVNKQEDANFSNNAMAEAFKAAKGE" gene 1067568..1067907 /gene="himD" /locus_tag="STM0982" /db_xref="GeneID:1252500" regulatory 1067568..1067576 /regulatory_class="minus_35_signal" /gene="himD" /locus_tag="STM0982" /note="putative -35_signal for himD; RegulonDB:STMLTH004715" regulatory 1067592..1067600 /regulatory_class="minus_10_signal" /gene="himD" /locus_tag="STM0982" /note="putative -10_signal for himD; RegulonDB:STMLTH004715" regulatory 1067615..1067620 /regulatory_class="ribosome_binding_site" /gene="himD" /locus_tag="STM0982" /note="putative RBS for himD; RegulonDB:STMS1H001266" CDS 1067623..1067907 /gene="himD" /locus_tag="STM0982" /note="site-specific recombination; similar to E. coli integration host factor (IHF), beta subunit; site-specific recombination (AAC73998.1); Blastp hit to AAC73998.1 (94 aa), 98% identity in aa 1 - 94" /codon_start=1 /transl_table=11 /product="integration host factor subunit beta" /protein_id="NP_459957.1" /db_xref="GI:16764342" /db_xref="GeneID:1252500" /translation="MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIE IRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG" gene 1068128..1070401 /gene="ycaI" /locus_tag="STM0983" /db_xref="GeneID:1252501" regulatory 1068128..1068133 /regulatory_class="ribosome_binding_site" /gene="ycaI" /locus_tag="STM0983" /note="putative RBS for ycaI; RegulonDB:STMS1H001267" CDS 1068137..1070401 /gene="ycaI" /locus_tag="STM0983" /note="similar to E. coli orf, hypothetical protein (AAC73999.1); Blastp hit to AAC73999.1 (780 aa), 70% identity in aa 27 - 780" /codon_start=1 /transl_table=11 /product="ComEC family protein" /protein_id="NP_459958.1" /db_xref="GI:16764343" /db_xref="GeneID:1252501" /translation="MKITTVSVCVVCGILPLMILPVLPDTWILAVLFCLACLLCLIPH HYARYAALTLLFFMWGIFAARQAIWAGNVLPAATQEATVVITATDHMTTHYGRITHLR GKPLFPAVGIVLHGQYLPTEVCAGQQWAMTLKVRAVHGQLNEGGFDSQRYALAQHQPL TGRFLQAKAINPECSLRGRYLASLRATLAPYPWQQVILALGMGERGAVSQEVKAVMRD TGTAHLMAISGLHIAFAALLAAGLIRGGQFFLPVRWIRWQTPLLGGILCAICYAWLTG LQPPALRTVAALSVWGGLKLSGRQWSGWQVWCCCLAAIIFADPVAVISQSLWLSAFAV AGLLFWYQWFPAPNGNFPRGLRWLLNLLHLQAGITLLLLPLQVALFHGISVTAMLANL FAVPWVTFVTVPLILAGMILHLTGPFFLEEWVWYLTDRALAALFYLLNALPQGWVNID NRWQWLTLLPWLTLIAWRLNVWRTWPAVCLCGLLLMSWPLWRPINASGWQVHMLDVGQ GLAIAIVRGDKVILYDTGRAWPEGDSGQQVIIPWLRWHNLTPEGVILSHEHLDHRGGL RSLQQVWPSMWIRSPLGWQGHLPCFRGEQWQWQGLTFQAHWPLRESADRGNNRSCVVK VDDGVHSILLTGDIEAGAEQKMLSRYWRHLAATFIQVPHHGSNTSSSLPFIQRVHGEA ALASASRYNAWRLPSRKVKQRYRQQAYQWFDTPHQGQISLRFSPQGWRIQGLRDQILP RWYHQWFGVSEDNG" gene 1070426..1072186 /gene="msbA" /locus_tag="STM0984" /db_xref="GeneID:1252502" regulatory 1070426..1070431 /regulatory_class="ribosome_binding_site" /gene="msbA" /locus_tag="STM0984" /note="putative RBS for msbA; RegulonDB:STMS1H001268" CDS 1070438..1072186 /gene="msbA" /locus_tag="STM0984" /note="similar to E. coli ATP-binding transport protein; multicopy suppressor of htrB (AAC74000.1); Blastp hit to AAC74000.1 (582 aa), 96% identity in aa 1 - 582" /codon_start=1 /transl_table=11 /product="lipid ABC transporter permease/ATP-binding protein" /protein_id="NP_459959.1" /db_xref="GI:16764344" /db_xref="GeneID:1252502" /translation="MHNDKDLSTWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFM LSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRR RLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMM FYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVL IFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM DSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRV IDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQI EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL AQHGVYAQLHKMQFGQ" gene 1072166..1073160 /gene="lpxK" /locus_tag="STM0985" /db_xref="GeneID:1252503" regulatory 1072166..1072171 /regulatory_class="ribosome_binding_site" /gene="lpxK" /locus_tag="STM0985" /note="putative RBS for lpxK; RegulonDB:STMS1H001269" CDS 1072183..1073160 /gene="lpxK" /locus_tag="STM0985" /EC_number="2.7.1.130" /note="lipid A 4'kinase; similar to E. coli putative EC 1.2 enzyme (AAC74001.1); Blastp hit to AAC74001.1 (328 aa), 82% identity in aa 1 - 324" /codon_start=1 /transl_table=11 /product="tetraacyldisaccharide 4'-kinase" /protein_id="NP_459960.1" /db_xref="GI:16764345" /db_xref="GeneID:1252503" /translation="MIARIWSGESPLWRLLLPLSWLYGLVSGAIRLSYKLGFKRAWRA PVPVVVVGNLTAGGNGKTPVVIWLVEKLQQRGVRVGVVSRGYGGKAAAYPLLLTPETT TAEAGDEPVLIYQRTGAPVAVAPERAAAVKAILAAHNVQIIITDDGLQHYRLARDIEI VVIDGVRRFGNGWWLPAGPMRERASRLKTVDAAIVNGGVARAGEIPMQLAPGLAVNLR TGARCDVAQLSNIVAMAGIGHPPRFFATLEACGAHPQKCVPLADHQTLAPADVQALVG EGQTLVMTEKDAVKCRAFAEDNWWFLPVDARLSGEQPDKLLQHITSLVR" gene 1073192..1074436 /gene="ycaQ" /locus_tag="STM0986" /db_xref="GeneID:1252504" regulatory 1073192..1073197 /regulatory_class="ribosome_binding_site" /gene="ycaQ" /locus_tag="STM0986" /note="putative RBS for ycaQ; RegulonDB:STMS1H001270" CDS 1073204..1074436 /gene="ycaQ" /locus_tag="STM0986" /note="similar to E. coli orf, hypothetical protein (AAC74002.1); Blastp hit to AAC74002.1 (410 aa), 77% identity in aa 1 - 408" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459961.1" /db_xref="GI:16764346" /db_xref="GeneID:1252504" /translation="MSLPYLSLSQARCLHLAAQGLLKKPRRNALPGDVLAAISRMALL QIDTINVVARSPYLVLFSRLGSYPQAWLDEALRRGELMEYWAHEACFLPRRDFKLIRH RMLSPEKMGWKYHAAWMHEHAEEIEQLVRHIQEHGPVRSADFEHAQKGASGWWEWKPH KRHLEGLFTAGKVMVVERRNFQRVYDLTPRVMPHWDDERDGLSQSQAENLMLDNSARS LGIFREQWLADYYRLKRPDLKGWRESRAEQQQIIPVEVETLGRMWLHADLLSQLEPAL NNALKATHSAVLSPFDPVVWDRKRATQLFGFNYRLECYTPAAKRQYGYFVLPLLYLGR LVGRMDAKMHRKTGVLEVISLYLEDDIRPGVSLQKGIWQAISAFAAWQRASRVTLGQC PPGLFSTMRHGWEIDPAP" gene 1074480..1074670 /gene="ycaR" /locus_tag="STM0987" /db_xref="GeneID:1252505" regulatory 1074480..1074485 /regulatory_class="ribosome_binding_site" /gene="ycaR" /locus_tag="STM0987" /note="putative RBS for ycaR; RegulonDB:STMS1H001271" CDS 1074488..1074670 /gene="ycaR" /locus_tag="STM0987" /note="similar to E. coli orf, hypothetical protein (AAC74003.1); Blastp hit to AAC74003.1 (60 aa), 93% identity in aa 1 - 60" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459962.1" /db_xref="GI:16764347" /db_xref="GeneID:1252505" /translation="MDHRLLEIIACPVCNGKLWYNQEQQELICKLDNLAFPLRDGIPV LLENEARALTSDESKS" gene 1074651..1075413 /gene="kdsB" /locus_tag="STM0988" /db_xref="GeneID:1252506" regulatory 1074651..1074656 /regulatory_class="ribosome_binding_site" /gene="ycaR" /locus_tag="STM0987" /note="putative RBS for kdsB; RegulonDB:STMS1H001272" CDS 1074667..1075413 /gene="kdsB" /locus_tag="STM0988" /EC_number="2.7.7.38" /note="similar to E. coli CTP:CMP-3-deoxy-D-manno-octulosonate transferase (AAC74004.1); Blastp hit to AAC74004.1 (248 aa), 93% identity in aa 1 - 248" /codon_start=1 /transl_table=11 /product="3-deoxy-manno-octulosonate cytidylyltransferase" /protein_id="NP_459963.1" /db_xref="GI:16764348" /db_xref="GeneID:1252506" /translation="MSFVVIIPARFSSTRLPGKPLVDINGKPMIVHVLERARESGAER IIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCGFSDDTVIVNVQGDEP MIPAVIIRQVAENLAQRQVGMATLAVPIHSAEEAFNPNAVKVVLDAEGYALYFSRATI PWDRDRFAKSLETVGDTCLRHLGIYGYRAGFIRRYVSWQPSPLEHIEMLEQLRVLWYG EKIHVAVAKAVPGTGVDTADDLERVRAEMR" gene 1075608..1076517 /locus_tag="STM0989" /db_xref="GeneID:1252507" regulatory 1075608..1075613 /regulatory_class="ribosome_binding_site" /locus_tag="STM0989" /note="putative RBS for STM0989; RegulonDB:STMS1H001273" CDS 1075624..1076517 /locus_tag="STM0989" /note="similar to E. coli orf, hypothetical protein (AAC74005.1); Blastp hit to AAC74005.1 (297 aa), 90% identity in aa 1 - 297" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459964.1" /db_xref="GI:16764349" /db_xref="GeneID:1252507" /translation="MEQLRAELSHLLGEKLSRIECVNEKADSALWSLYDSQGIPMPLM ARSFTTPGVAQQLAWKTSMLARSGTVRMPVIYGVLTHEEHPGPDVLLLERLRGVPVEA PARTPERWEQLKDQIVEGLLAWHRQDSRGCVGAVDHTQENIWPSWYRQRVEVLWTTLN QFSNTGLTMQDRRILFRTRECLPSLFEGFNDNCVLVHGNFCLRSMLKDARSDQLLAMV GPGLMLWAPREFELFRLMDNPLAEGLLWHYLQRAPVAESFIWRRWLYVLWDEVAQLVN TGRFNRTNFDLAAKSLLPWLA" gene complement(1076497..1077288) /gene="ycbC" /locus_tag="STM0990" /db_xref="GeneID:1252508" CDS complement(1076497..1077273) /gene="ycbC" /locus_tag="STM0990" /note="similar to E. coli orf, hypothetical protein (AAC74006.1); Blastp hit to AAC74006.1 (259 aa), 89% identity in aa 1 - 256" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459965.1" /db_xref="GI:16764350" /db_xref="GeneID:1252508" /translation="MLFTLKKVIGGMLLPLPLMLLMIGVGLALLWFSRFQKTGKVFIS VGWLALLLLSLQPVSDHLLRPIENRYPTWQGPQKVEYIVVLGGGYTWNPQWAPSSNLI NNSLPRLAEGIRLWRANPGARLIFTGGVAKTNTVSTAEVGARVAQSLGVPRSDIITLD KPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQHAGLNPLPAPANQLAIDSPL NPWERAIPSPVWLMHSDRAGYETLGRLWQWLKGISGKPGE" regulatory complement(1077283..1077288) /regulatory_class="ribosome_binding_site" /gene="ycbC" /locus_tag="STM0990" /note="putative RBS for ycbC; RegulonDB:STMS1H001274" gene 1077308..1078212 /gene="smtA" /locus_tag="STM0991" /db_xref="GeneID:1252509" regulatory 1077308..1077316 /regulatory_class="minus_35_signal" /gene="smtA" /locus_tag="STM0991" /note="putative -35_signal for smtA; RegulonDB:STMLTH004716" regulatory 1077336..1077344 /regulatory_class="minus_10_signal" /gene="smtA" /locus_tag="STM0991" /note="putative -10_signal for smtA; RegulonDB:STMLTH004716" regulatory 1077397..1077402 /regulatory_class="ribosome_binding_site" /gene="smtA" /locus_tag="STM0991" /note="putative RBS for smtA; RegulonDB:STMS1H001275" CDS 1077409..1078212 /gene="smtA" /locus_tag="STM0991" /note="similar to E. coli S-adenosylmethionine-dependent methyltransferase (AAC74007.1); Blastp hit to AAC74007.1 (261 aa), 88% identity in aa 1 - 254" /codon_start=1 /transl_table=11 /product="tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM" /protein_id="NP_459966.1" /db_xref="GI:16764351" /db_xref="GeneID:1252509" /translation="MQDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLEEIGGR KLRVLDAGGGEGQTAIKMAERGHQVTLCDLSGEMIARARQAAEAKGVSKDMHFIQCPA QDVASHLESPVDLILFHAVLEWVADPVGVLETLWSVLRPGGALSLMFYNANGLLMHNM VAGNFDYVQAGMPKRKKRTLSPDYPRDPAQVYQWLEAIGWQITGKTGVRVFHDYLREK HQQRDCYETLVELETRYCRQEPYISLGRYIHVTAIKSPALAADARITYE" gene 1078194..1079527 /gene="mukF" /locus_tag="STM0992" /db_xref="GeneID:1252510" regulatory 1078194..1078199 /regulatory_class="ribosome_binding_site" /gene="smtA" /locus_tag="STM0991" /note="putative RBS for mukF; RegulonDB:STMS1H001276" CDS 1078205..1079527 /gene="mukF" /locus_tag="STM0992" /note="killing factor KICB; similar to E. coli mukF protein (killing factor KICB) (AAC74008.1); Blastp hit to AAC74008.1 (440 aa), 98% identity in aa 1 - 440" /codon_start=1 /transl_table=11 /product="condensin subunit MukF" /protein_id="NP_459967.1" /db_xref="GI:16764352" /db_xref="GeneID:1252510" /translation="MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLD GEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYR LTPLGIGITDYYIRQREFSTLRLSMQLSIVAGELKRAADAAAEGGDEFHWHRNVYAPL KYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL QDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIG YDRHVHKFIRTAIDMDKNRVFAQRLRQSVQTYFDDPWALTYANADRLLDMRDEEMALR DDEVTGELPPDLEYEEFNEIREQLAAIIEEQLAIYKTRQTPLDLGLVVREYLAQYPRA RHFDVARIVIDQAVRLGVAQADFTGLPAKWQPINDYGAKVQAHVIDKY" gene 1079501..1080212 /gene="mukE" /locus_tag="STM0993" /db_xref="GeneID:1252511" regulatory 1079501..1079506 /regulatory_class="ribosome_binding_site" /gene="mukE" /locus_tag="STM0993" /note="putative RBS for mukE; RegulonDB:STMS1H001277" CDS 1079508..1080212 /gene="mukE" /locus_tag="STM0993" /note="similar to E. coli orf, hypothetical protein (AAC74009.1); Blastp hit to AAC74009.1 (225 aa), 99% identity in aa 1 - 225" /codon_start=1 /transl_table=11 /product="chromosome partitioning protein MukE" /protein_id="NP_459968.1" /db_xref="GI:16764353" /db_xref="GeneID:1252511" /translation="MSLTNIEQVMPVKLAQALANPLFPALDSALRSGRHIGLDELDNH AFLMDFQEYLEEFYARYNVELIRAPEGFFYLRPRSTTLIPRSVLSELDMMVGKILCYL YLSPERLANEGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLN RLRRLGMVWFMGHDSSKFRITESVFRFGADVRAGDDPREAQRRLIRDGEAMPIENHLQ LNDETEESQPDSGEEE" gene 1080201..1084678 /gene="mukB" /locus_tag="STM0994" /db_xref="GeneID:1252512" regulatory 1080201..1080206 /regulatory_class="ribosome_binding_site" /gene="mukE" /locus_tag="STM0993" /note="putative RBS for mukB; RegulonDB:STMS1H001278" CDS 1080212..1084678 /gene="mukB" /locus_tag="STM0994" /note="similar to E. coli kinesin-like cell division protein involved in chromosome partitioning (AAC74010.1); Blastp hit to AAC74010.1 (1486 aa), 94% identity in aa 1 - 1486" /codon_start=1 /transl_table=11 /product="cell division protein MukB" /protein_id="NP_459969.1" /db_xref="GI:16764354" /db_xref="GeneID:1252512" /translation="MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTM AAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVV GVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLSLAELKDKLDEM EGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLR DYLLPENSGVRKAFQDMEAALRENRLTLEAIRVTQSDRDLFKHLISEATDYVAADYMR HANERRVHLDQALAFRRDLYTSRKQLAAEQYKHVDMARELGEHNGAEGSLEADYQAAS DHLNLVQTALRQQEKIERYEADLEELQIRLEEQNEVVAEAAEMQDENEARAEAAELEV DELKSQLADYQQALDVQQTRAIQYNQAISALARAKELCHLPDLTPESAAEWLDTFQAK EQEATEKLLSLEQKMSVAQTAHSQFEQAYQLVAAINGPLARSEAWDVARELLRDGVNQ RHLAEQVQPLRMRLSELEQRLREQQEAERLLAEFCKRQGKNFDIDELEALHQELEARI ASLSESVSSASEQRMALRQEQEQLQSRIQHLMQRAPVWLAAQNSLNQLSEQCGEEFTS SQEVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQPGGAEDQRLNALAERFG GVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQIAEQLEGLTDCPEDLYLIEGD PQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPSLPIFGRAARENRIESLHAEREVLS ERFATLSFDVQKTQRLHQAFSRFIGSHLSVAFEDDPEAEIRRLNGRRVELERALATHE SDNQQQRLQFEQAKEGVSALNRLLPRLNLLADETLADRVDEIQERLDEAQEAARFVQQ YGNQLAKLEPVVSVLQSDPEQFEQLKEDYAWSQQMQRDARQQAFALAEVVERRAHFSY SDSAEMLSGNSDLNEKLRQRLEQAEAERTRAREALRSHAAQLSQYSQVLASLKSSYDT KKELLNDLQRELQDIGVRADSGAEERARQRRDELHAQLSNNRSRRNQLEKALTFCEAE MENLTRKLRKLERDYHEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAYLSADEL RSMSDKALGALRLAVADNEHLRDVLRLSEDPKRPERKIQFFVAVYQHLRERIRQDIIR TDDPVEAIEQMEIELSRLTEELTSREQKLAISSRSVANIIRKTIQREQNRIRMLNQGL QSVSFGQVNSVRLNVNVRETHATLLDVLSEQQEQHQDLFNSNRLTFSEALAKLYQRLN PQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLRAESGALSTGEAIGTGMSIL VMVVQSWEDEARRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLQMQLIIAAPE NISPEKGTTYKLVRKVFQNTEHVHVVGLRGFAPQLPETLPGTQTEDTPSEAS" gene 1085010..1086864 /gene="ycbB" /locus_tag="STM0995" /db_xref="GeneID:1252513" regulatory 1085010..1085015 /regulatory_class="ribosome_binding_site" /gene="ycbB" /locus_tag="STM0995" /note="putative RBS for ycbB; RegulonDB:STMS1H001279" CDS 1085023..1086864 /gene="ycbB" /locus_tag="STM0995" /note="similar to E. coli putative amidase (AAC74011.1); Blastp hit to AAC74011.1 (615 aa), 84% identity in aa 1 - 615" /codon_start=1 /transl_table=11 /product="L,D-transpeptidase" /protein_id="NP_459970.1" /db_xref="GI:16764355" /db_xref="GeneID:1252513" /translation="MLLNKMCGRCLSAISLCLAVTFAPLFNAQADEPEMIPGDSAVAA TDLAGPQKQSAATAIMAGIQPLPEGVSAEKVRADLQSQLPSGYTPVYMSQLTLLYAAR DMKPMWDNRDAVKAFQQQLAEVAIAGFQPQFTAWVALLTDPAVNGMARDVVLSDAMMG YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQY APMHDALLKLVADSRPWPQLTNTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG DNTADSAVVSPSAVVDETSVAHDEPTARRSKPAPAARAYDRELVEAVKRFQAWQGLGA DGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELSTGIMVNIPAYSLVYYQNGNQ VLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGY TVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHD TPNHTLFQRDARALSSGCVRVNKASELANMLLQDAGWNDARISGALKQGDTRYVNIRQ NIPVNLYYLTAFVGADGRMQYRTDIYNYDLTARSSAQIVPKVEQLIR" gene 1087124..1087672 /gene="ycbK" /locus_tag="STM0996" /db_xref="GeneID:1252514" CDS 1087124..1087672 /gene="ycbK" /locus_tag="STM0996" /note="similar to E. coli orf, hypothetical protein (AAC74012.1); Blastp hit to AAC74012.1 (182 aa), 95% identity in aa 1 - 182" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459971.1" /db_xref="GI:16764356" /db_xref="GeneID:1252514" /translation="MDKFDANRRKLLALGGVALGAAILPAPAFATLSTPRPRILTLNN LHTGESIKAEFFDGRAYIQDELAKLNHFFRDYRANKVRSIDPRLFDQLYRLQGLLGTR KPVQLISGYRSLDTNNELRARSSGVAKKSYHTKGQAMDFHIEGVALSNIRKAALSMRA GGVGYYPRSNFVHIDTGPARHW" gene 1087690..1088347 /gene="ycbL" /locus_tag="STM0997" /db_xref="GeneID:1252515" regulatory 1087690..1087695 /regulatory_class="ribosome_binding_site" /gene="ycbL" /locus_tag="STM0997" /note="putative RBS for ycbL; RegulonDB:STMS1H001280" CDS 1087700..1088347 /gene="ycbL" /locus_tag="STM0997" /note="similar to E. coli orf, hypothetical protein (AAC74013.1); Blastp hit to AAC74013.1 (215 aa), 91% identity in aa 1 - 215" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459972.1" /db_xref="GI:16764357" /db_xref="GeneID:1252515" /translation="MNYRIIPVTAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDA SGVTLMQILLTHGHLDHVGAASELAQHYGVPVIGPEKEDEFWLQGLPAQSRMFGLDEC QPLTPDRWLNDGDRVSVGNVTLQVLHCPGHTPGHVVFFDEQSQLLISGDVIFKGGVGR SDFPRGDHTQLIDAIKRKLLPLGDDVTFIPGHGPLSTLGYERLHNPFLQDEMPVW" gene complement(1088409..1089612) /gene="aspC" /locus_tag="STM0998" /db_xref="GeneID:1252516" CDS complement(1088409..1089599) /gene="aspC" /locus_tag="STM0998" /EC_number="2.6.1.1" /note="similar to E. coli aspartate aminotransferase (AAC74014.1); Blastp hit to AAC74014.1 (396 aa), 95% identity in aa 1 - 396" /codon_start=1 /transl_table=11 /product="aromatic amino acid aminotransferase" /protein_id="NP_459973.1" /db_xref="GI:16764358" /db_xref="GeneID:1252516" /translation="MFENITAAPADPILGLADLFRADDRPGKINLGIGVYKDETGKTP VLTSVKKAEQYLLENETTKNYLGIDGIPEFARCTQELLFGKGSALINDKRARTAQTPG GTGALRIAADFLAKNTPVKRVWVSNPSWPNHKSVFNAAGLEVREYAYYDAENHTLDFE ALQASLSEAQAGDVVLFHGCCHNPTGIDPTLEQWQVLAELSVEKGWLPLFDFAYQGFA RGLEEDAEGLRAFAALHKELIVASSYSKNFGLYNERVGACTLVAADAETVDRAFSQMK SAIRANYSNPPAHGASIVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA NRDFSFIIKQNGMFSFSGLTKDQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAI VAVL" regulatory complement(1089607..1089612) /regulatory_class="ribosome_binding_site" /gene="aspC" /locus_tag="STM0998" /note="putative RBS for aspC; RegulonDB:STMS1H001281" gene complement(1089784..1090975) /gene="ompF" /locus_tag="STM0999" /db_xref="GeneID:1252517" CDS complement(1089784..1090875) /gene="ompF" /locus_tag="STM0999" /note="outer membrane protein F precursor (PORIN OMPF) (outer membraneprotein 1A, iA, or B). (SW:OMPF_SALTY)" /codon_start=1 /transl_table=11 /product="phosphoporin PhoE" /protein_id="NP_459974.1" /db_xref="GI:16764359" /db_xref="GeneID:1252517" /translation="MMKRKILAAVIPALLAAATANAAEIYNKDGNKLDLYGKAVGRHV WTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAF AGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYR NSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRT NDQQDRDGNGDRAESWAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQN LEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDY RFNLLDENDYSSSYVGTDDQAAVGITYQF" regulatory complement(1090884..1090889) /regulatory_class="ribosome_binding_site" /gene="ompF" /locus_tag="STM0999" /note="putative RBS for ompF; RegulonDB:STMS1H001282" regulatory complement(1090951..1090959) /regulatory_class="minus_10_signal" /gene="ompF" /locus_tag="STM0999" /note="putative -10_signal for ompF; RegulonDB:STMLTH004717" regulatory complement(1090967..1090975) /regulatory_class="minus_35_signal" /gene="ompF" /locus_tag="STM0999" /note="putative -35_signal for ompF; RegulonDB:STMLTH004717" protein_bind complement(1091027..1091037) /note="putative binding site for OmpR, RegulonDB: STMS1H000334" /bound_moiety="OmpR" protein_bind complement(1091028..1091062) /note="putative binding site for IHF, RegulonDB: STMS1H000229" /bound_moiety="IHF" protein_bind complement(1091065..1091077) /note="putative binding site for Lrp, RegulonDB: STMS1H000265" /bound_moiety="Lrp" protein_bind complement(1091067..1091077) /note="putative binding site for OmpR, RegulonDB: STMS1H000322" /bound_moiety="OmpR" protein_bind complement(1091073..1091083) /note="putative binding site for OmpR, RegulonDB: STMS1H000323" /bound_moiety="OmpR" protein_bind complement(1091087..1091102) /note="putative binding site for IHF, RegulonDB: STMS1H000218" /bound_moiety="IHF" protein_bind complement(1091135..1091185) /note="putative binding site for IHF, RegulonDB: STMS1H000220" /bound_moiety="IHF" protein_bind complement(1091277..1091289) /note="putative binding site for OmpR, RegulonDB: STMS1H000326" /bound_moiety="OmpR" gene complement(1091482..1092891) /gene="asnS" /locus_tag="STM1000" /db_xref="GeneID:1252518" CDS complement(1091482..1092882) /gene="asnS" /locus_tag="STM1000" /EC_number="6.1.1.22" /note="similar to E. coli asparagine tRNA synthetase (AAC74016.1); Blastp hit to AAC74016.1 (466 aa), 94% identity in aa 1 - 466" /codon_start=1 /transl_table=11 /product="asparagine--tRNA ligase" /protein_id="NP_459975.1" /db_xref="GI:16764360" /db_xref="GeneID:1252518" /translation="MSVVPVADVLQGRVAVDQEVTVRGWVRTRRDSKAGISFLAVYDG SCFDPVQAVINNSLPNYNEEVLHLTTGCSVVVTGKVVASPGQGQSFEIQATKVEVAGW VEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFDEQGFFWV STPLITASDTEGAGEMFRVSTLDLENLPRNDQGRVDFDKDFFGKESFLTVSGQLNGET YACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFADLEDNARLAEAMLKYVFNA VLEERADDMKFFAERVDKDAIARLERFVSTDFAQVDYTDAVAILERCGKTFENPVFWG VDLSSEHERYLAEEHFKAPVVVKNYPKEIKAFYMRLNEDGKTVAAMDVLAPGIGEIIG GSQREERLDVLDARMAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQN VRDVIPFPRTPRNASF" regulatory complement(1092886..1092891) /regulatory_class="ribosome_binding_site" /gene="asnS" /locus_tag="STM1000" /note="putative RBS for asnS; RegulonDB:STMS1H001283" gene complement(1093083..1093550) /locus_tag="STM1001" /db_xref="GeneID:1252519" CDS complement(1093083..1093544) /locus_tag="STM1001" /note="similar to E. coli regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system (AAC73975.1); Blastp hit to AAC73975.1 (164 aa), 31% identity in aa 12 - 162" /codon_start=1 /transl_table=11 /product="putative leucine response regulator" /protein_id="NP_459976.1" /db_xref="GI:16764361" /db_xref="GeneID:1252519" /translation="MKLDAWDKNILTLLQRDNRLSQREIAEQVNLSPSAVNRRIAALE EAGIIKGNVSLIDAGKVGRPVTIVVQVVIENERFNLLEEARQRFVSCPQVQQVYYVTG DFDFLLVLNVRDMAEYEALTRELFFSSGNIKSFKTIVVMQNAKQEMRVLIE" regulatory complement(1093545..1093550) /regulatory_class="ribosome_binding_site" /locus_tag="STM1001" /note="putative RBS for STM1001; RegulonDB:STMS1H001284" gene 1093850..1095075 /locus_tag="STM1002" /db_xref="GeneID:1252520" regulatory 1093850..1093855 /regulatory_class="ribosome_binding_site" /locus_tag="STM1002" /note="putative RBS for STM1002; RegulonDB:STMS1H001285" CDS 1093861..1095075 /locus_tag="STM1002" /EC_number="4.3.1.-" /EC_number="6.1.1.22" /note="similar to E. coli putative dehydratase (AAC75909.1); Blastp hit to AAC75909.1 (398 aa), 50% identity in aa 14 - 395" /codon_start=1 /transl_table=11 /product="diaminopropionate ammonia-lyase" /protein_id="NP_459977.1" /db_xref="GI:16764362" /db_xref="GeneID:1252520" /translation="MHELIKYQFNTRRKKYGTGAALSLLNGNVGHEVLAFHKKLPNYA VTPLHNLAHLSQRLGLGSIHIKDESWRFGLNAFKGLGGSYAVGKYLADKLQCDINSLS FAALNTPEIKEKIKDCVFVTATDGNHGRGVAWAAEQLGLKAVVYMPKGSSLIRAENIR HHGAECTITDLNYDDAVRLAHRMAQTKGWVLLQDTAWTGYEEIPTWIMQGYMTLAVEA YEQLAETNSPLPTHLILQAGVGSFAGSVMGYFVEKMQENIPNIIVVEPHQANCLYQSA VMDDGQPHCVTGDMATIMAGLACGEPNIISWPIIRDNTSCFISADDCLAAKGMRISAA PRPGTDTPFISGESGAIGVGLLYELMNNMHYQDLANRLQLDASAHVLLISTEGDTSPD IYEDIVWNGRSA" gene 1095314..1096756 /locus_tag="STM1003" /db_xref="GeneID:1252521" regulatory 1095314..1095319 /regulatory_class="ribosome_binding_site" /locus_tag="STM1003" /note="putative RBS for STM1003; RegulonDB:STMS1H001286" CDS 1095320..1096756 /locus_tag="STM1003" /note="similar to E. coli inner membrane transport protein (AAC73118.1); Blastp hit to AAC73118.1 (476 aa), 30% identity in aa 12 - 430" /codon_start=1 /transl_table=11 /product="amino acid:proton symporter" /protein_id="NP_459978.1" /db_xref="GI:16764363" /db_xref="GeneID:1252521" /translation="MLEQLSQLFEFLWGGPLFLCVIGIGFYFTVRLNFFQIINLKDIY RNTIGTLAGKNKQNTTGEVASKKSLKSIEVAATVLSGSLGAGTIAGVAAAIAVGGPGA IFWMWIIAVVGMMTKMVEVTLAVKYRSKGENGEYYGGPMHYIKKGLNKKWHPLAGLYA FALMILVITDACFVQTNTMAAVIHYTFDIPTSVIGGFIVIVGALVILKGLSSLGKFCT IALPPITIAYFIGAAGVVVLNIEAIPQVIKSIFYYAFAPAPAAGGFVGSTIMMAISKG ASRGIFTNEAGMGTSATVHATANVDYAFRQGMWGAVEVFFVSMITCNFTAFAVLASGM WTDASYQGIQIIFAALKETWHPIIVQVLCLGVALILFTSYLGSYIKFRTSINYIFGDK LERIIKWLYFLPPLIAVNMEIPVIWLMADIAVGFLVIPNVIALFLLRKEFISEFNLFR TRTQRDTNSEKTTQITHVNMSKSEGKEE" gene complement(1096834..1098221) /gene="pncB" /locus_tag="STM1004" /db_xref="GeneID:1252522" CDS complement(1096834..1098036) /gene="pncB" /locus_tag="STM1004" /EC_number="6.3.4.21" /note="nicotinate phosphoribosyltransferase. (SW:PNCB_SALTY)" /codon_start=1 /transl_table=11 /product="nicotinate phosphoribosyltransferase" /protein_id="NP_459979.1" /db_xref="GI:16764364" /db_xref="GeneID:1252522" /translation="MTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVQVAAEFRCRGD DLLGIYADAIREQVDAMQHLRLLEDEFQWLSGLPFFKPDYLNWLREFRYNPAQVCVTN DNGKLNIRLTGPWREVIMWEVPLLAVISELVHHYRSPNAGVDQALDALESKLVDFTAL TANLDMSRFHLMDFGTRRRFSREVQQAIVKRLQQESWFVGTSNYDLARRLALTPMGTQ AHEWFQAHQQISPDLATSQRAALAAWLNEYPDQLGIALTDCITMDAFLRDFGIEFASR YQGLRHDSGDPVAWGEKAIAHYEKLGIDPLTKTLVFSDNLDLPKAVELYRHFASRVQL SFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFD LPQVRKAS" regulatory complement(1098051..1098056) /regulatory_class="ribosome_binding_site" /gene="pncB" /locus_tag="STM1004" /note="putative RBS for pncB; RegulonDB:STMS1H001287" regulatory complement(1098194..1098202) /regulatory_class="minus_10_signal" /gene="pncB" /locus_tag="STM1004" /note="putative -10_signal for pncB; RegulonDB:STMLTH004462" regulatory complement(1098213..1098221) /regulatory_class="minus_35_signal" /gene="pncB" /locus_tag="STM1004" /note="putative -35_signal for pncB; RegulonDB:STMLTH004462" gene complement(1098231..1099531) /locus_tag="STM1005" /db_xref="GeneID:1252523" CDS complement(1098231..1099523) /locus_tag="STM1005" /note="similar to E. coli putative transposase (AAC74651.1); Blastp hit to AAC74651.1 (398 aa), 54% identity in aa 2 - 393" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage integrase" /protein_id="NP_459980.1" /db_xref="GI:16764365" /db_xref="GeneID:1252523" /translation="MANASYPTGVENHGGSLRIWFLYKGKRVRENLGIPDTAKNRKIA GELRSSVCFAIRMGNFNYVEKFPNSPNLARFGQDRKEITVLELTERWSELKRMEISSN TMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLTGFQVMKKDHRTQVKGRKSS TVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKGEPDPLTTDEFIRFIQACGHQ QMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRNLTQTDEFTLPKTDAGTDRV IYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPCTFVFSPQCVKRGPRTGY HYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANPNFIATQMGHTDAQMV YKVYGKWMSEKSAEQVSLLNQALFRYAPSLPQSMVAAQ" regulatory complement(1099526..1099531) /regulatory_class="ribosome_binding_site" /locus_tag="STM1005" /note="putative RBS for STM1005; RegulonDB:STMS1H001288" gene complement(1099568..1099823) /locus_tag="STM1006" /db_xref="GeneID:1252524" CDS complement(1099568..1099816) /locus_tag="STM1006" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage excisionase" /protein_id="NP_459981.1" /db_xref="GI:16764366" /db_xref="GeneID:1252524" /translation="MSNIIQLTPNKWVSEKVLIAVTGLKPGTITRARKESWMLGREYL HISPDGNPKPSSECIYNREAVDQWIEAQKKNQPGAKTT" regulatory complement(1099818..1099823) /regulatory_class="ribosome_binding_site" /locus_tag="STM1006" /note="putative RBS for STM1006; RegulonDB:STMS1H001289" gene complement(1099857..1100104) /locus_tag="STM1007" /db_xref="GeneID:1252525" CDS complement(1099857..1100096) /locus_tag="STM1007" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459982.1" /db_xref="GI:16764367" /db_xref="GeneID:1252525" /translation="MRLINRSKQSPLGRRACDVALAAHHEKFGDYGRQKHVTNYTVVV DGVKVPVEVVNRATSYVATAMIGVRKLRNLPAQAN" regulatory complement(1100099..1100104) /regulatory_class="ribosome_binding_site" /locus_tag="STM1007" /note="putative RBS for STM1007; RegulonDB:STMS1H001290" gene complement(1100139..1101300) /locus_tag="STM1008" /db_xref="GeneID:1252526" CDS complement(1100139..1101296) /locus_tag="STM1008" /note="hypothetical protein AAC26069.1 (gi|7467267)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459983.3" /db_xref="GI:1109557607" /db_xref="GeneID:1252526" /translation="MCAALKRCAYRHKGKIMENTNIVTTEQQAPNTISASNAIFNVQA LGQLTAFANLMADSQVTVPAHLAGKPADCMAIVMQAMQWGMNPYAVAQKTHLVNGVLG YEAQLVNAVIASSSAIHGRFHYRYGGDWERCTRTQEITRDKNGKNGKYTVTERVRGWT DEDEIGLFVQVGAILRGESEITWGEPLYLSGVVTRNSPLWVSNPKQQIAYLGVKYWAR LYCPEVILGVYSPDEVEQREEREINPAPVQRMSVQEITSEVSTRTSAQESAANVDAVA DDLRERIDTASSVDQAKAIRADIESQKALLGTALFTELKNKAVKRYYQVDAQNKVEAV INSIPNPGEPEAAEMFAKAESTLGAAKRHLGDELHDKYRVTLDDMKPEYIG" gene complement(1101259..1104151) /locus_tag="STM1009" /db_xref="GeneID:1252527" CDS complement(1101259..1104144) /locus_tag="STM1009" /note="exodeoxyribonuclease VIII homolog (gi|7467238)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage exodeoxyribonuclease" /protein_id="NP_459984.1" /db_xref="GI:16764369" /db_xref="GeneID:1252527" /translation="MSGTNPVFLVRKAKKSSGQKDAVLWCSDDFEAANATLDYLLIKS GAKLKDYFKAVATNFPVVNELPPEGELSLTFCDYYQLAKDNMTWTQIPGVTLPSSEAA AAARQHIVDGVDTETGEVLEDHTENFGNESNSPAQATAPAPELTVVATMPLRHRVLAQ YIGEGEYLYHVDASQKKEILRLEMDTDNSYVQNLLLAAENVEAFKKAIEHDIHKIVNA VKKVFPVDGKTPELATVIQFLKTWFETEHIDRGLLVKEWAKGNRVSAIQRTESGANAG GGNKTDRNPDYEHTLDTLDVEIAMATLPMDFNIYELPGSVYRRAKEIVKKKESPFKEW SAALRATPGILDYSRAAIFALIRSAHPEFYHYPGRLQGYINANLTETDHENPTEEALT AARHTPEKDAVEEANRQLAAARGEYVEGISDPNDPKWVKTGTSQPTTEPELVKNVGNG IFDVSALMQNSSTHGTETNPETTSNVQVQKADSDEKQAGDAVQAGEDDLGTGKEAVTV ENQNQAEAQQNVPESQQEEPEAAWPEYFEPGRYEGVPNEVYHAANGISSTQVKDARVS LMYFNARHVEKTIVKERSPVLDMGNLVHVLALQPENLEAEFSVEPEIPEGAFTTTATL REFIDAHNASLPALLSADDIKALLEEYNATLPSQMPLGASVDETYASYEQLPEEFQRI ENGTKHTATAMKACIKEYNVTLPAPVKTSGSRDALLEQLAIINPDLVAQEAQKSSPLK VSGTKADLIQAVKSVNPAVVFADELLDAWRENTEGKVLVTRQQLSTALNIQKALLEHP TAGKLLTHPSRAVEVSYFGIDEETGLEVRVRPDLELDMGGLRIGADLKTISMWNIKQE GLRAKLHREIIDRDYHLSAAMYCETAALDQFFWIFVNKDENYHWVAIIEASTELLELG MLEYRKTMREIANGFDTGEWSAPITEDYTDELNDFDVRRLEALRVQA" regulatory complement(1101295..1101300) /regulatory_class="ribosome_binding_site" /locus_tag="STM1008" /note="putative RBS for STM1008; RegulonDB:STMS1H001291" regulatory complement(1104146..1104151) /regulatory_class="ribosome_binding_site" /locus_tag="STM1009" /note="putative RBS for STM1009; RegulonDB:STMS1H001292" gene complement(1104271..1104570) /locus_tag="STM1010" /db_xref="GeneID:1252528" CDS complement(1104271..1104570) /locus_tag="STM1010" /note="hypothetical protein 4 (gi|7467264)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459985.1" /db_xref="GI:16764370" /db_xref="GeneID:1252528" /translation="MKNSPLIWRGFIHPEFKTGEIMEIVKIEMNLKAVNKSIALFNCE NLDGGYVLGKFDSPHCAVKAISLLTVKVSDGEQAGFGNYRSYKLDYSEKFYQTIH" gene complement(1104743..1105009) /locus_tag="STM1011" /db_xref="GeneID:1252529" CDS complement(1104743..1105003) /locus_tag="STM1011" /note="hypothetical protein 2 (gi|7467263)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459986.1" /db_xref="GI:16764371" /db_xref="GeneID:1252529" /translation="MLQDRTFSCTFCFTNRTFGFIVSFIDNKRIVVRCKTFRWPAIRQ TRVRMIDFARRPARQQAVPLNRIEVLIRRLCYLLAQKGDPDA" regulatory complement(1105004..1105009) /regulatory_class="ribosome_binding_site" /locus_tag="STM1011" /note="putative RBS for STM1011; RegulonDB:STMS1H001293" gene complement(1105053..1105468) /locus_tag="STM1012" /db_xref="GeneID:1252530" CDS complement(1105053..1105463) /locus_tag="STM1012" /note="probable regulatory protein (gi|7467281)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage putative regulatory protein" /protein_id="NP_459987.1" /db_xref="GI:16764372" /db_xref="GeneID:1252530" /translation="MNKNLHPIFAKRIQQVLDENGWSMADLSRRVMLSHTSVRKWASG TSVASGERLKRLSAVTGRPEYWFFMEPGDESEGERAEPKPRVLDEKEETLLSLFNQLP EAEKLRVILHTKAVLQEMDLLKNNVFDLINDLKK" regulatory complement(1105463..1105468) /regulatory_class="ribosome_binding_site" /locus_tag="STM1012" /note="putative RBS for STM1012; RegulonDB:STMS1H001294" gene 1105788..1106162 /locus_tag="STM1013" /db_xref="GeneID:1252531" CDS 1105788..1106162 /locus_tag="STM1013" /note="probable regulatory protein (gi|7467282)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage putative regulatory protein" /protein_id="NP_459988.1" /db_xref="GI:16764373" /db_xref="GeneID:1252531" /translation="MAYQAKRHQPNNHRGYLPMENAIARKLDPPEINPIEIESVLLNR LASVGQKSYAEHMGISESTVSRRKAEGYFCNMAKELAFLGIQAAPPEAVLVSRNYLTA VEILADAGLKAERARPDALGWD" gene 1106241..1107230 /locus_tag="STM1014" /db_xref="GeneID:1252532" regulatory 1106241..1106246 /regulatory_class="ribosome_binding_site" /locus_tag="STM1014" /note="putative RBS for STM1014; RegulonDB:STMS1H001295" CDS 1106247..1107230 /locus_tag="STM1014" /note="probable replication protein (gi|7467283)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage putative regulatory protein" /protein_id="NP_459989.1" /db_xref="GI:16764374" /db_xref="GeneID:1252532" /translation="MSMSNTAEIYKFPAPIPTQQECRMADLENGYLRLANQIQDALCI VELSGREFRVLNAIIRLTYGWSKKSDRIANSLIADKTTLKVKHVSEAVLSLAYRNIII LRRIGQTRYIGINTNLDKWAYSKPHCSKCPVSFPDDEIATWIISVPETRDSYPRKGGR ASPKTGIVIPENRDSVLPHSAIPENGDSYPRKEGRASPKTGNTKDIIPKTNIKDLTPF NPPKGKVKFDPLSIPVPEWLNAASWNEWVTYRQQSGKPIKTELTVTKAFRLLKECLDE GHDPVNVINTSIANGYQGLFKPKFALNDRRAGRDVNHISAPDKTIPTGFRG" gene 1107221..1107982 /locus_tag="STM1015" /db_xref="GeneID:1252533" regulatory 1107221..1107226 /regulatory_class="ribosome_binding_site" /locus_tag="STM1015" /note="putative RBS for STM1015; RegulonDB:STMS1H001296" CDS 1107233..1107982 /locus_tag="STM1015" /note="dnaC protein homolog (gi|7443681)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage ATPase involved in DNA replication initiation" /protein_id="NP_459990.1" /db_xref="GI:16764375" /db_xref="GeneID:1252533" /translation="MKNVIGTGSALDRLKRIIPASVQPKFSTADEWRAWQEAEGRKRS EELDRMNQKSRTEKIFGRSGIQDLHRSCTFANYEVSGEGQRKAYTMAKSYAQNFGSGF ASFVFSGGPGTGKNHLAAAIGNHLLAGGHSVLVVTIPDLMLRVRECYDGGQSEASLLD DLCKVDLLVLDEVGIQRGSSGEKVILNQVIDRRLSSMRPVGVLTNLNHEGLLDSLGAR VIDRLQMDGGMWVNFDWESYRKNVSHLRIVK" gene 1107987..1108340 /locus_tag="STM1016" /db_xref="GeneID:1252534" regulatory 1107987..1107992 /regulatory_class="ribosome_binding_site" /locus_tag="STM1016" /note="putative RBS for STM1016; RegulonDB:STMS1H001297" CDS 1107993..1108340 /locus_tag="STM1016" /note="hypothetical protein (gi|7467246)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459991.1" /db_xref="GI:16764376" /db_xref="GeneID:1252534" /translation="MARPKTQSERMIILERIIGLVKEQGRITTNDVVAIFGVHRTTAE KYLRIALERGGFIRHGRCGIFRDQRAVIDYDLRRYSSSQVTGFSALPVLEKSPVMQVY GASKMSINKGGAQ" gene 1108331..1108648 /locus_tag="STM1017" /db_xref="GeneID:1252535" regulatory 1108331..1108336 /regulatory_class="ribosome_binding_site" /locus_tag="STM1017" /note="putative RBS for STM1017; RegulonDB:STMS1H001298" CDS 1108337..1108648 /locus_tag="STM1017" /note="hypothetical protein 11 (gi|7467260)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459992.1" /db_xref="GI:16764377" /db_xref="GeneID:1252535" /translation="MSNIDKRALREVAERATPGNWRRTSSLFNGITVTPFSLCGEEVT LAHTVEKRDAEFIAAANPATVLALLDVLYEFGEDEVAISEYVTNLEDALRVAAAPQQE E" gene 1108726..1109016 /locus_tag="STM1018" /db_xref="GeneID:1252536" CDS 1108726..1109016 /locus_tag="STM1018" /note="hypothetical protein 11 (gi|7467261)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459993.1" /db_xref="GI:16764378" /db_xref="GeneID:1252536" /translation="MNYEDKLMYQRMIFEEGKEPRLYSSQHDSKFIPISNNNGKVQKV PVMELKDTRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD" gene 1109302..1109541 /locus_tag="STM1019" /db_xref="GeneID:1252537" regulatory 1109302..1109307 /regulatory_class="ribosome_binding_site" /locus_tag="STM1019" /note="putative RBS for STM1019; RegulonDB:STMS1H001299" CDS 1109308..1109541 /locus_tag="STM1019" /note="hypothetical protein 13 (gi|7467262)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459994.1" /db_xref="GI:16764379" /db_xref="GeneID:1252537" /translation="MRIELVISRAKQLPEGAVPALEKELITRLQNQYENCNLTIRRGS QDGLSIVGAADGDKKRIQSILQETWESADDWFY" gene 1109951..1110559 /locus_tag="STM1020" /db_xref="GeneID:1252538" regulatory 1109951..1109956 /regulatory_class="ribosome_binding_site" /locus_tag="STM1020" /note="putative RBS for STM1020; RegulonDB:STMS1H001300" CDS 1109957..1110559 /locus_tag="STM1020" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459995.1" /db_xref="GI:16764380" /db_xref="GeneID:1252538" /translation="MAHELQLIKQSSGILIPATPETSEILQSKIKLGAVLVAEFRQVR NPAFHRRFFALLNLGFEYWEPTGGTISANERKLVNGYAKFLAAYGGNESALLDAAEQY LEQIANRRVTNGISLCKSFDAYRAWVTVEAGHYDAIQLPDGTLRKHPRSIAFSSMDEV EFQQLYKSALDVLWRWILSRTFRTQREAENAAAQLMSFAG" gene 1110762..1111379 /locus_tag="STM1021" /db_xref="GeneID:1252539" regulatory 1110762..1110767 /regulatory_class="ribosome_binding_site" /locus_tag="STM1021" /note="putative RBS for STM1021; RegulonDB:STMS1H001301" CDS 1110768..1111379 /locus_tag="STM1021" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459996.1" /db_xref="GI:16764381" /db_xref="GeneID:1252539" /translation="MAKLPRRKCANKECRQWFHPIREGQIVCSYQCASAVGKEQTRKA REAAQRKAQSLQRAAEKKERAAWRQRKAAVKPLKHWIDLTQRAVNDICRETELAEGLG CISCGTKTAFAWHAGHYRSTAAAGHLRFTRFNIHLQCDVYNVYKSGNIEAYRAALVER YGEAAVLALENNNTPHRWTVEELKEIRLAALADLRALKKLEAA" gene 1111498..1112309 /locus_tag="STM1022" /db_xref="GeneID:1252540" regulatory 1111498..1111503 /regulatory_class="ribosome_binding_site" /locus_tag="STM1022" /note="putative RBS for STM1022; RegulonDB:STMS1H001302" CDS 1111512..1112309 /locus_tag="STM1022" /note="similar to E. coli orf, hypothetical protein (AAC74632.1); Blastp hit to AAC74632.1 (260 aa), 31% identity in aa 11 - 260" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage putative molecular chaperone, DnaJ family" /protein_id="NP_459997.1" /db_xref="GI:16764382" /db_xref="GeneID:1252540" /translation="MNLESLPKYFSPKSMMPGAVPCGITSDTLTITDVMASLGLLTAK AAVGIELYLAKAGVLSSENIIAYIRQLAEQRAERHGALRKMEKGKRSKFLDTMARYVF RDYSLSAASLVTCSSCHGAKLIDAEVFTNKVTYPDGKPPKWVKDTKGISPSDWEVWKS VREQVRVVCKACDGKGHVKNECRCRGRGEILDKKKSELQGVPVYKKCPRCKGRGYPRL KDTEIFKALGVTEMVWRYNYKLFFDRLVEHCHIEESYAEKVLGNVTR" gene 1112372..1112693 /locus_tag="STM1023" /db_xref="GeneID:1252541" regulatory 1112372..1112377 /regulatory_class="ribosome_binding_site" /locus_tag="STM1023" /note="putative RBS for STM1023; RegulonDB:STMS1H001303" CDS 1112376..1112693 /locus_tag="STM1023" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459998.1" /db_xref="GI:16764383" /db_xref="GeneID:1252541" /translation="MPVTLQELRTSPRRGFCFFWWYIPLVSNHRGGDMGFYYVFQYKP KGMSSGKHLNVSEEFSDRNEAKRAKSRHMINDPDCVFSGIVQADSPAAVLQEVQAESL NRL" gene 1112860..1112992 /locus_tag="STM1024" /db_xref="GeneID:1252542" regulatory 1112860..1112865 /regulatory_class="ribosome_binding_site" /locus_tag="STM1024" /note="putative RBS for STM1024; RegulonDB:STMS1H001304" CDS 1112867..1112992 /locus_tag="STM1024" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459999.1" /db_xref="GI:16764384" /db_xref="GeneID:1252542" /translation="MKMHNDPHSMDSQSIFAGSQLLPMEKTSHLALSVGFRSHLA" gene complement(1113128..1113583) /locus_tag="STM1025" /db_xref="GeneID:1252543" CDS complement(1113128..1113577) /locus_tag="STM1025" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460000.1" /db_xref="GI:16764385" /db_xref="GeneID:1252543" /translation="MKNTALGKFIFIVGTALLLGGCSGMVMPPYATHGTSVGIIAPAG GYSEWHTDSRNHTTGDSHSQSQGNCTQSEDSQLNENGLTRTHQSNCNTRSQTHSSSTS KTRSSSVGFSVGGPVGASIGLIKQMESMNRAPANDMSSNEMFKNFGF" regulatory complement(1113578..1113583) /regulatory_class="ribosome_binding_site" /locus_tag="STM1025" /note="putative RBS for STM1025; RegulonDB:STMS1H001305" gene complement(1113938..1114456) /locus_tag="STM1026" /db_xref="GeneID:1252544" CDS complement(1113938..1114450) /locus_tag="STM1026" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460001.1" /db_xref="GI:16764386" /db_xref="GeneID:1252544" /translation="MCLAEYLISGPGGMDPDIEIDDDTYDECREVLSRILEDAYTQSG TFRRLMNYAYDQELHDVEQRWLLGAGENFGTTVTDEDLESSEGRKVIALNLDDTDDDS IPEYYESNDGPQQFDTTRSFIHEVVHALTHLQDKEDSNPRGPVVEYTNIILKEMGHTS PPRIAYEFSN" regulatory complement(1114451..1114456) /regulatory_class="ribosome_binding_site" /locus_tag="STM1026" /note="putative RBS for STM1026; RegulonDB:STMS1H001306" gene 1114977..1115229 /locus_tag="STM1027" /db_xref="GeneID:1252545" regulatory 1114977..1114982 /regulatory_class="ribosome_binding_site" /locus_tag="STM1027" /note="putative RBS for STM1027; RegulonDB:STMS1H001307" CDS 1114981..1115229 /locus_tag="STM1027" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460002.1" /db_xref="GI:16764387" /db_xref="GeneID:1252545" /translation="MAGLIAYGRLIYDGATRKNKWLEGVLCGALSLCVTSALDVVGLP VSISPFVGGIIGFVGVDKLREIAISALKKRAGVNDENQ" gene 1115204..1115665 /locus_tag="STM1028" /db_xref="GeneID:1252546" regulatory 1115204..1115209 /regulatory_class="ribosome_binding_site" /locus_tag="STM1027" /note="putative RBS for STM1028; RegulonDB:STMS1H001308" CDS 1115213..1115665 /locus_tag="STM1028" /note="similar to E. coli bacteriophage lambda lysozyme homolog (AAC73656.1); Blastp hit to AAC73656.1 (165 aa), 40% identity in aa 35 - 161" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage lysozyme" /protein_id="NP_460003.1" /db_xref="GI:16764388" /db_xref="GeneID:1252546" /translation="MMRISEKGITLIKEFEGCSLTAYPDPGTGGDPWTIGYGWTHSVD GKPVKPGMMIDEATAERLLNTGLVGYENDVSRLVKVKLTQGQFDALVSFAYNLGARTL SSSTLLRKLNAGDYAGAADEFLRWNKAGGKVLNGLTRRREAERALFLS" gene 1115677..1116162 /locus_tag="STM1029" /db_xref="GeneID:1252547" regulatory 1115677..1115682 /regulatory_class="ribosome_binding_site" /locus_tag="STM1029" /note="putative RBS for STM1029; RegulonDB:STMS1H001309" CDS 1115683..1116162 /locus_tag="STM1029" /note="bacteriophage ES18 gp15 protein (gi|1143595)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460004.1" /db_xref="GI:16764389" /db_xref="GeneID:1252547" /translation="MFVGLLLVSLIVAGRLANHYRNNAITYKEQRDTVTHRLTLANAT ITDMTKRQRDVAALDEKYTKELADAKAENDALRDDVAAGRRRLYVNATCPAVPTGKST STARMDNAASPRLADSAQRDYFALKERVKTMQKQLEGAQAYIRTQCHGNAGKTSNQW" gene 1116362..1116903 /locus_tag="STM1030" /db_xref="GeneID:1252548" regulatory 1116362..1116367 /regulatory_class="ribosome_binding_site" /locus_tag="STM1030" /note="putative RBS for STM1030; RegulonDB:STMS1H001310" CDS 1116370..1116903 /locus_tag="STM1030" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460005.1" /db_xref="GI:16764390" /db_xref="GeneID:1252548" /translation="MDQEIKSLELNITQLSAITGAHRQTIASRLKGVKTSGGNGSNLK IYRLVDILTAMMTMPAVTGENDPNKMKPSDRRAWFQSEMTRIELEKEMRTLIPASEVL SVYAVMAKTVVKTLEILPDLLERDAALPPDALEMTQKIIDQLREDLASMTYQACADAI NGDDDDNGDEGQEEEQE" gene 1116854..1118998 /locus_tag="STM1031" /db_xref="GeneID:1252549" regulatory 1116854..1116859 /regulatory_class="ribosome_binding_site" /locus_tag="STM1030" /note="putative RBS for STM1031; RegulonDB:STMS1H001311" CDS 1116860..1118998 /locus_tag="STM1031" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460006.1" /db_xref="GI:16764391" /db_xref="GeneID:1252549" /translation="MMTTVTKGKRKSRNSLASAVVAGCDISSMFRPPRRMKISDAVRK YMRVPRDAGNSVAWESTLTPYVVEAMNCLSSRSYDAVVFVAPARTGKTLGLIDGWISY NIVCDPSDMLVVQMTQDKAQEHSKRRLAKMFRHSPAIARRLSPHRNDNNVHDKTFRDG SFLKIGWPSINVFSSSDFKCVALTDYDRFPEDVDGEGDAFSLASKRTTTFMSLGMTLV ESSPGREITDTRWKPSSPHEAPPTTGILSLYNRGDRRRWYWPCPHCGEYFQPSMANMT GYRHIADPMEASEAARIQCPHCHKLTEPQQKRELNNRGVWLREGQHIDRDGNITGEAR RSRIASFWMEGPAAAYQTWAQLVYKLLTAEEEYERTGSEETLKAVINTDWGLPYQSRR SLEARSGDALMARAEDVSKRTVSDGVRFIVATVDVQGGKKRRFVVQVVGYGAYGERWI IDRYNIRYSLRVNEDGESQPVNPAARPEDWDLLKTDVLEKTYPLAADPEQFMPVLAMA VDSGGEDGVTDNAYAFWRRCKRKGVAGRVYLFKGDSTRREKLITKTYPDNTERSERRA KARGDVPLYLLQTNALKDRVAAALEREEPGANYIHFPDWLGPWFYEELTYEERSADGK WKKPGRGNNEALDLMCYAHALAILRGYERINWEKPPGWARLPEKDAAKTTQPVEVRQQ EQHEGGEKAVKARKKKILPAWGGGSGGGWL" gene 1119426..1120745 /locus_tag="STM1032" /db_xref="GeneID:1252550" regulatory 1119426..1119431 /regulatory_class="ribosome_binding_site" /locus_tag="STM1032" /note="putative RBS for STM1032; RegulonDB:STMS1H001312" CDS 1119432..1120745 /locus_tag="STM1032" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460007.1" /db_xref="GI:16764392" /db_xref="GeneID:1252550" /translation="MEERVIGAKGIIVEPQPLTVAGTLNNALAEQIRARWAEWSVSPD VTGQYTRPVLERLLLRTWLRDGEVFSQMVAGKMPGLEPVAGVPFWLEAMEPDYVPMEQ TDSTNNLIQGIYFNDWQRPKSYIVCKSWPGFATAMVATKLIDAENMLHLKFTRRLNQA RGVTLLAPVIIRLLDLKEYEDSERLAARISAAFAMFIRRSDAMVQDGDAPDYADKDRD LDIEPGTILKDLLPGEDIGTIKSDRPNANLESFRMGQLRAVAAGVRGSFSSIARNYDG TYSAQRQELVEAQEGYAILQDNFIAAVSRPVYRRWLATAITAGVIDVPTDTDMATLFN AVYSGPVMPWIDPLKEANAWRILIRGGAATESDWVRARGGAPAEVKRRRKAEIDENRK LGLVFDTDPAHDPGEQDNAGSEDNSGGDKNAAGDDSRERTRGGKQ" gene 1120662..1122750 /locus_tag="STM1033" /db_xref="GeneID:1252551" regulatory 1120662..1120667 /regulatory_class="ribosome_binding_site" /locus_tag="STM1032" /note="putative RBS for STM1033; RegulonDB:STMS1H001313" CDS 1120669..1122750 /locus_tag="STM1033" /note="similar to E. coli ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5 (AAC73540.1); Blastp hit to AAC73540.1 (207 aa), 29% identity in aa 73 - 203" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage Clp protease-like protein" /protein_id="NP_460008.1" /db_xref="GI:16764393" /db_xref="GeneID:1252551" /translation="MKTTVAAIKMPPVMTAGNGRGEGSSNSWYSIRAAANNTAEVRIY DEIGGWGISARWFAEELAALGQINRINLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYI DGMACSMASAIAMVGNPIIMPENAMMMIHKPRGVAGGEAEDIREYADLLDKIESVIIP IYTEKTGKTPEDIAAMLAKETWMSGAECVSEGFADKLIQPVKAMACIHSKRVEEFEHM PQSIKGMIIAPQGNAGAQPQPQAKAPESQIQSQAQSLVTVDENAIRARLQEEQRNRIT GIQNVFSLSGDRYASLMAKCIADVDCSLEMAKDRLLAEMAKGITPTNQLNGPQNRAEF HAGMYTGNGNITGDAVRAAVMARAGYEEAQKDNPYNCMTLRELARISLVARGTGVSSM NPMQMIGMAFTHSTSDFGNILLDVANKSILQGWQEAPETFDAWTKKGQLSDFRIAHRV GMGGFSSLRQVREGAEYKYVTTGDKQATIALATYGELFSITRQAIINDDMNMLTDVPM KLGRAAKATIADLVYDVLISNQKLSSDNVALFDKTKHANVLEKAVMDVASLDKARQLM RMQKEGDRHLNIRPAFVLVPTAMESVSNQVIKSVSVKGADINAGIINPVKDFATVIAE PRLDDASQSTFYLTAAKGSDTVEVAYLNGVDEPYIDQQEGFTVDGVTTKVRIDAGVAP VDYRGMVKCTV" gene 1122834..1123164 /locus_tag="STM1034" /db_xref="GeneID:1252552" regulatory 1122834..1122839 /regulatory_class="ribosome_binding_site" /locus_tag="STM1034" /note="putative RBS for STM1034; RegulonDB:STMS1H001314" CDS 1122841..1123164 /locus_tag="STM1034" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage putative RecA/RadA recombinase" /protein_id="NP_460009.1" /db_xref="GI:16764394" /db_xref="GeneID:1252552" /translation="MAKNYVEDGKTIEIVATTSLKSGDLVQVGDMFAVAVTDIAAGSA GTGIAEGVFSIPKLTTEDIAVGKKVYLKDNVVQTDATGSLPYVGVVWAPAANGDETVP VKING" gene 1123152..1123456 /locus_tag="STM1035" /db_xref="GeneID:1252553" regulatory 1123152..1123157 /regulatory_class="ribosome_binding_site" /locus_tag="STM1035" /note="putative RBS for STM1035; RegulonDB:STMS1H001315" CDS 1123157..1123456 /locus_tag="STM1035" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage ATP-binding sugar transporter-like protein" /protein_id="NP_460010.1" /db_xref="GI:16764395" /db_xref="GeneID:1252553" /translation="MADLFDGMKRRMDALIAERFGMKVNINGTDCIVVESDFLAELGP VEGNGKNVVVFSGNVIPRRGDRVVLRGSEFTVTRIRRFNGKPQLTLEENNGGKGA" gene 1123429..1124003 /locus_tag="STM1036" /db_xref="GeneID:1252554" regulatory 1123429..1123434 /regulatory_class="ribosome_binding_site" /locus_tag="STM1035" /note="putative RBS for STM1036; RegulonDB:STMS1H001316" CDS 1123437..1124003 /locus_tag="STM1036" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable minor tail protein" /protein_id="NP_460011.1" /db_xref="GI:16764396" /db_xref="GeneID:1252554" /translation="MEVKGLKEAISVLKELDRGYVTRAKIRAINRVAKRVVSVSVRSA AALVVAGDNRRQGIPVRTVRRRARVRLARADKPFANIYVNCDPLTAIRLLSSPPSTPM RGRKGKPLRIGKYRFDRGFIAQAPNGWWQVFERSGAGRYPLNVVKIPVADALRHAFNT QVVLQMKTEMPKELKHEISYELRRFTKK" gene 1123992..1124401 /locus_tag="STM1037" /db_xref="GeneID:1252555" regulatory 1123992..1123997 /regulatory_class="ribosome_binding_site" /locus_tag="STM1037" /note="putative RBS for STM1037; RegulonDB:STMS1H001317" CDS 1124000..1124401 /locus_tag="STM1037" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable minor tail protein" /protein_id="NP_460012.1" /db_xref="GI:16764397" /db_xref="GeneID:1252555" /translation="MTRHSAVRQAIIAALKKTDDGSTTFFDGRPVVVEEDELPAVAVY LSDAQYTGPEVDGDIWSAVLHVEVFLKATAPDSALDEQMENRVYPALGSVAGLGDIIR TMSAQGYNYQRDDEMAMWGSADLSYDITYSM" gene 1124406..1125162 /locus_tag="STM1038" /db_xref="GeneID:1252556" regulatory 1124406..1124411 /regulatory_class="ribosome_binding_site" /locus_tag="STM1038" /note="putative RBS for STM1038; RegulonDB:STMS1H001318" CDS 1124413..1125162 /locus_tag="STM1038" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable major tail protein" /protein_id="NP_460013.1" /db_xref="GI:16764398" /db_xref="GeneID:1252556" /translation="MTDTTIPNPLAPVKGANTTFWMYNSEGDPFASPLSDNNWLRLAN VKDLQPGELTADAEDNNYLDDENADWKSTTQGQKSAGDTSVTLAWKPGEDVQKKLIQL FTTGQKRGFRIKYPNGTVDVFRGWVSSLGKTVQSKDEIARTVKITSVGRPYMAEEDAP EVVSVTGLTVEPTNATVKVGATTAVTFTVKPDNVTDKSLRIATSDPTTATVTQAENIA TVKGVKAGTVKIIGMTTDGNFTAIADITVQA" gene 1125200..1125606 /locus_tag="STM1039" /db_xref="GeneID:1252557" regulatory 1125200..1125205 /regulatory_class="ribosome_binding_site" /locus_tag="STM1039" /note="putative RBS for STM1039; RegulonDB:STMS1H001319" CDS 1125208..1125606 /locus_tag="STM1039" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable minor tail protein" /protein_id="NP_460014.1" /db_xref="GI:16764399" /db_xref="GeneID:1252557" /translation="MFLKKETFTRGDASVALFELSGLQRIEYLEFIQKRTAKYDTDMD GTTEADKRVAYMQMALEINAWLVSRSLLNGDSSQDADTLYQSVQAKWSYEALDAGAES VLMLSGLSADKKDNASDSGNESEDMTPEKS" gene 1125597..1125932 /locus_tag="STM1040" /db_xref="GeneID:1252558" regulatory 1125597..1125602 /regulatory_class="ribosome_binding_site" /locus_tag="STM1040" /note="putative RBS for STM1040; RegulonDB:STMS1H001320" CDS 1125603..1125932 /locus_tag="STM1040" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable minor tail protein" /protein_id="NP_460015.1" /db_xref="GI:16764400" /db_xref="GeneID:1252558" /translation="MNNELHFVRQLAREFRRPDWRRMLDEMSSTELSEWADFFRENSF SDALLDAEFSTLKAQVFMLVTGKEIDAADFSLLTLPGAVQSMTEQDLLEVAVGIPGGV RFEPESR" gene 1126006..1128999 /locus_tag="STM1041" /db_xref="GeneID:1252559" regulatory 1126006..1126011 /regulatory_class="ribosome_binding_site" /locus_tag="STM1041" /note="putative RBS for STM1041; RegulonDB:STMS1H001321" CDS 1126012..1128999 /locus_tag="STM1041" /note="lambda phage H tail component homolog (gi|2232364)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable minor tail protein" /protein_id="NP_460016.1" /db_xref="GI:16764401" /db_xref="GeneID:1252559" /translation="MDSSDLVEKRIKRCMESSARSVAASAKSISAAMAQSQVATRTQS DAMAQLAREANEARERAVDLNQKLRAEAAQAAVVAQAQDAAAAAFYRQIDSVKQLSGG LQELQRIQAQVRQAKGRGDISQGDYLALVSEAAAKTRELTDAEALATQKKAQFIRRLK EQTAVQGLSRTELLRVKAAELGVSSAADVYIRKLDTATKSTHALGLKSAMARREIGVL IGELARGNFGALRGSGITLANRAGWIEQLMSPKGMMLGGLVGGVAAAVYGLGKAYYEG AKESEEFNKQLILTGSYAGKTTGKLNEMAKSLAGNGVTQHDAAGVLTQVVGSGAFTGQ AVAMVSRTAARMQENVGQSVDETIRQFKRLQDDPVNAAKELDRALHFLTATQLEQIRV LGEQGRTADAAKIAMSAYSEEMNKRAGDVHDNLGWIEKAWNAVGDAAKWAWDRMLDIG REDTLDEKIATLQEKIARARKTPWTVSSSQTEYDQQQLNELQEQKRQKDLLDAKAQAE RNYQKTQKRRNEQNAALNRDNETESLRHQREVARITAMQYADAAVRNAALERENERHK KAMARQKEKPKAYYNDEAGRLLLQYSQQQAQTEGLIAAAKLSTTEKMTEAHKQLLSFQ QRIADLSGKKLTADEQSVLAHKDEIALALQKLDISQQDLQHQNAFNELKKKTLTLTSQ LADEESRVRQQHALALATMGMGDQQRGRYEEHLKIQQHYQEQLEQLKRDSKAKGTYGS DEYRQAEQELQASLDRRLAEWADYNAKVDAAQGDWTQGASRALDNFLAQGGNVAGMTE NVFTNAFNGMADSIANFAVTGKGSFRSLTVSILADLAKMEARIAASKLLGSVLGMFVF GASAGGSTPSGAYSSAALSVIPNADGGVYRSAGLSQYSGSIVNRPTFFAFARGAAVMG EAGPEAILPLRRGTDGKLGVVAAGSGGMAMFAPQYHIAISNTGPELTPQALKAVYDLG KKAAADFVQQQGRDGGRLSGAYR" gene 1128991..1129328 /locus_tag="STM1042" /db_xref="GeneID:1252560" regulatory 1128991..1128996 /regulatory_class="ribosome_binding_site" /locus_tag="STM1042" /note="putative RBS for STM1042; RegulonDB:STMS1H001322" CDS 1128996..1129328 /locus_tag="STM1042" /note="lambda phage M tail component homolog (gi|2232363)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable minor tail protein" /protein_id="NP_460017.1" /db_xref="GI:16764402" /db_xref="GeneID:1252560" /translation="MMKTFHWKVDPDMGVDSEPQVSVVRFGDGYEQRRASGINNDLKK YSVTIRVDREDGPGLEGFLSQHNGVKAFLWTPPYGYRQIKVVCRKWSVKAGLLKTTFT ATFEQVIS" regulatory 1129420..1129425 /regulatory_class="ribosome_binding_site" /note="putative RBS for STM1043; RegulonDB:STMS1H001323" gene 1129427..1129924 /locus_tag="STM1043" /db_xref="GeneID:1252561" CDS 1129427..1129924 /locus_tag="STM1043" /note="attachment and invasion protein homolog (gi|2232362)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage attachment and invasion protein homolog" /protein_id="NP_460018.1" /db_xref="GI:16764403" /db_xref="GeneID:1252561" /translation="MKKIVVAVLVGLALGSIGVANAAGYKNTVSIGYAYTDLSGWLSG NANGANIKYNWEDLDSGFGAMGSVTYTSADVNNYGYKVGDADYTSLLVGPSYRFNDYL NAYVMIGAANGHIKDNWGNSDNKTAFAYGAGIQLNPVENIAVNASYEHTSFSTDADSD VKAGT" gene complement(1130041..1130580) /gene="sodC" /locus_tag="STM1044" /db_xref="GeneID:1252562" CDS complement(1130041..1130574) /gene="sodC" /locus_tag="STM1044" /EC_number="1.15.1.1" /EC_number="6.3.4.21" /note="superoxide dismutase [Cu-Zn] precursor. (SW:SODC_SALTY)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage superoxide dismutase precursor (Cu-Zn)" /protein_id="NP_460019.1" /db_xref="GI:16764404" /db_xref="GeneID:1252562" /translation="MKYTILSLVAGALISCSAMAENTLTVKMNDALSSGTGENIGEIT VSETPYGLLFTPHLNGLTPGIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGK HLGPYNDKGHLGDLPGLVVNADGTATYPLLAPRLKSLSELKGHSLMIHKGGDNYSDKP APLGGGGARFACGVIEK" regulatory complement(1130575..1130580) /regulatory_class="ribosome_binding_site" /gene="sodC" /locus_tag="STM1044" /note="putative RBS for sodC; RegulonDB:STMS1H001324" gene 1130658..1131359 /locus_tag="STM1045" /db_xref="GeneID:1252563" regulatory 1130658..1130663 /regulatory_class="ribosome_binding_site" /locus_tag="STM1045" /note="putative RBS for STM1045; RegulonDB:STMS1H001325" CDS 1130664..1131359 /locus_tag="STM1045" /note="lambda phage L tail component homolog (gi|2232360)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable minor tail protein" /protein_id="NP_460020.1" /db_xref="GI:16764405" /db_xref="GeneID:1252563" /translation="MQDIPQETLSETTKAEQSAKVDLWEFDLTAIGGERFFFCNEPNE KGEPLTWQGRQYEPYPIQVQDFEMNGKGASPRPNLVVANLFGLVTGMAEDLQSLVGAS VVRHQVYSKFLDAVNFSNGNPDADPEQEAVARYNVEQLSELDSSTATIILASPAETDG SVVPGRTMLADSCPWDYRDENCGYDGPPVADEFDKPTSDPKKDKCSHCMKGCEMRNNL VNAGFFASINKLS" gene 1131363..1132106 /locus_tag="STM1046" /db_xref="GeneID:1252564" regulatory 1131363..1131368 /regulatory_class="ribosome_binding_site" /locus_tag="STM1046" /note="putative RBS for STM1046; RegulonDB:STMS1H001326" CDS 1131369..1132106 /locus_tag="STM1046" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable tail assembly protein" /protein_id="NP_460021.1" /db_xref="GI:16764406" /db_xref="GeneID:1252564" /translation="MINDDILAHARQCAPAESCGYVVRTAQGERYFPCENLSAEPTMY FRISPEDYLNARNRGDIVALVHSHPDGKPCLSSADRTLQIQSGLDWWLVCDNRIHKFR CVPHLTGRQFEHGVTDCYTLFRDAYHLAGIDMPDFDREDDWWSQGKSLYLDHLEAAGF YRVNPEDAQPGDVLICCFGSPTPNHAAIYCGNGELLHHIPEQLSKREGYNDKWQRRTH SIWRHRQWCESAFTGIYNDLESASASA" gene 1131997..1132708 /locus_tag="STM1047" /db_xref="GeneID:1252565" regulatory 1131997..1132002 /regulatory_class="ribosome_binding_site" /locus_tag="STM1047" /note="putative RBS for STM1047; RegulonDB:STMS1H001327" CDS 1132004..1132708 /locus_tag="STM1047" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable tail assembly protein" /protein_id="NP_460022.1" /db_xref="GI:16764407" /db_xref="GeneID:1252565" /translation="MATTDTLNMAAPAMVRICLYGDLQRFGKRISLSIKTAAEGIHAL AIQLPGFRQRMNEGWYQVRIAGSDMAPDTLTARLNESLPPGAVVHIVPRMAGAKNGIW QVVAGAALIGASFIPGLNAVAAAVLFSAGTSMALGGVAQMLTPVPKTPTVGQADNGKQ NTYFSSLENMVAQGNPVPVLYGEMKIGSRVISQMMSTRDESTSGKVVVIGSPLQANTT SRQDGGITRPSVVIRQ" gene 1132772..1135227 /locus_tag="STM1048" /db_xref="GeneID:1252566" regulatory 1132772..1132777 /regulatory_class="ribosome_binding_site" /locus_tag="STM1048" /note="putative RBS for STM1048; RegulonDB:STMS1H001328" CDS 1132780..1135227 /locus_tag="STM1048" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage host specificity protein J, phage lambda" /protein_id="NP_460023.1" /db_xref="GI:16764408" /db_xref="GeneID:1252566" /translation="MSKGGGKGHTPREAKDDLKSTQQLSVIDALSEGPIVGPVNGLQS VLINNTPVVDADGNSNIHGVTVVYQVGETPQAPLEGFEASGAETVLGVEVKHDNPVTR TVVSENVDRLRFTFGVQMLQETTDKGDRNPSSVNLLIQFQRSGIWNTEFDITINGKIT TQYLASVVADNLPPRPFSVRMVRVTPDSTTDRLQNKTLWSSYTEIIDIRQGYPGTAVA GLLVDAEQFGSQQVTRNYHLRGRIFQVPSNYDPDTRTYTGLWDGAFKPAYTNNPAWCT MDKLTHPRYGLGRRIGGADVDKWALYAIAQYCDQPVPDGFGGTEPRMTLNAYITTQRK AYDVLADFCSVMRCMPVWNGRKMTFIQDRPSDKAWTYTNGNVVGGRFKYSFSALKDRH NAVEVRYTDPLNGWQTSTELVEDHASQARYGRNLLKMDAFGCTSRGQAHRTGLWVMMT ELLETQTVDFSVGAEGLRHTPGDIIEVCDNDYAGASVGGRITDLDISTRTLTLDREIT LPESGATTLNIVGPDGKPFSTEIQSQPAPDRVVTKVLPETVQPYSIWGLKLPSLKRRL FRCVRIKENDDGTYAITALQHVPEKESIVDNGAHFDPLPGTTNSIIPPAVQHLTVSTD NDSTLYQAKAKWGTPRVVKDVRFVVRLTTGSGNEGDPVRLVTTATTSETEYAFHELPL GDYTLTVRAINGYGQQGEPASVAFSIQAPEAPSTIEMTPGYFQITVTPHQTVYDASVQ YEFWYSATQLATAADIQSKAQYLGVGSFWIKDGLKPLHDAWFYVRSVNLAGKSVFAEA SGRPGMTRKGIWIFLRD" gene 1136453..1138902 /locus_tag="STM1049" /db_xref="GeneID:1252567" regulatory 1136453..1136458 /regulatory_class="ribosome_binding_site" /locus_tag="STM1049" /note="putative RBS for STM1049; RegulonDB:STMS1H001329" CDS 1136464..1138902 /locus_tag="STM1049" /note="similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 49% identity in aa 3 - 549, 57% identity in aa 878 - 1084, 43% identity in aa 1008 - 1122, 32% identity in aa 354 - 568, 26-1073758628dentity in aa 961 - 1111, 24% identity in aa 959 - 1113, 27-1073758654dentity in aa 940 - 1106, 26% identity in aa 766 - 829, 36% identity in aa 822 - 851" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable tail fiber protein" /protein_id="NP_460024.1" /db_xref="GI:16764409" /db_xref="GeneID:1252567" /translation="MPVLISGVLKDGTGTPVQNCTIQLKACRTSTTVVVNTVASENPD DAGRYSMDVEQGQYTVTLLVDGYPPSHAGVITVYDDSKPGTLNDFLGAMTEDDVRPEA LRRFEAMVEEVARQASEASRNATAAGQASEQAQTSAGQASESATAAVNAAGAAEASAT QAASSAASAESSAGTATTKAGEASASAASADTARTAAAASAAAAKTSEANADASRTAA GDSAAAAAASATAAQTSAERAGASETAAKTSETQAASSAGDAGASATAAAASEKAAAA SAAAAKTSETNAATSASTAAASATAASSSASEASTHAAASDTSASLAAQSSTAAGAAA TRAEDAAKRAEDIADVISLEDASLTKKGIVKLSSATDSDSEALAATPKAVHAVMDEVQ TKAPLDSPALTGTPTAPTPETAAAGIEIATAAFVAAKVAQLVGSAPETLDTLKELADA LGNDPNFATTVLNKLAGKQPLDDTLTALSGKSVDGLIEYVGLRETINHAADALLKSQN GGDIPEKPLFVQNIGALPASGTAVAANRLASRGALPALTGATRGSDSGLIMGEVYNNG YPTQYGNILRLTGTGDGEILIGWSGTNGAPAPAYIRSHRDTADAEWSEWAMLYTSLNP PPNSYPVGAAIAWPSDATPAGYALMQGQSFDKSAYPLLAIAYPSGIIPDMRGWTIKGK PISGRAVLSQEMDGNKSHSHSARAQDTDLGTKSTSSFDYGTKSTNTTGNHTHQFGGYI NSYWGDSNHTSFQPGGGAWTQAAGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAET TVKNIAFNYIVRLA" gene 1138890..1139483 /locus_tag="STM1050" /db_xref="GeneID:1252568" regulatory 1138890..1138895 /regulatory_class="ribosome_binding_site" /locus_tag="STM1050" /note="putative RBS for STM1050; RegulonDB:STMS1H001330" CDS 1138902..1139483 /locus_tag="STM1050" /note="tail fiber assembly like-protein (gi|8927433)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage tail fiber assembly like-protein" /protein_id="NP_460025.1" /db_xref="GI:16764410" /db_xref="GeneID:1252568" /translation="MTFKMSEQAQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTD IAPPDIPASHIAIFDAETQTWSLHEDHRGEMVYDTTTGNQVYISAPGPLPENVTSVSP GGEYQKWDGKAKVWVKDEAAEKAAQLRQAEETKSRLLQMASEKIAPLQDAVDLGIATD DEKARLDEWKKYRVLVNRMDTAAPDWPERPASQ" gene 1139954..1140927 /gene="sseI" /locus_tag="STM1051" /db_xref="GeneID:1252569" regulatory 1139954..1139959 /regulatory_class="ribosome_binding_site" /gene="sseI" /locus_tag="STM1051" /note="putative RBS for sseI; RegulonDB:STMS1H001331" CDS 1139959..1140927 /gene="sseI" /locus_tag="STM1051" /note="secreted effector I (gi|8927434)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage putative type III secreted protein" /protein_id="NP_460026.1" /db_xref="GI:16764411" /db_xref="GeneID:1252569" /translation="MPFHIGSGCLPAIISNRRIYRIAWSDTPPEMSSWEKMKEFFCST HQAEALECIWTICHPPAGTTREDVVSRFELLRTLAYDGWEENIHSGLHGENYFCILDE DSQEILSVTLDDVGNYTVNCQGYSETHHLTMATEPGVERTDITYNLTSDIDAAAYLEE LKQNPIINNKIMNPVGQCESLMTPVSNFMNEKGFDNIRYRGIFIWDKPTEEIPTNHFA VVGNKEGKDYVFDVSAHQFENRGMSNLNGPLILSADEWVCKYRMATRRKLIYYTDFSN SSIAANAYDALPRELESESMAGKVFVTSPRWFNTFKKQKYSLIGKM" gene 1140995..1141443 /locus_tag="STM1052" /note="pseudogene; in-frame stop following codon 112" /pseudo /db_xref="GeneID:1252570" gene complement(1141575..1142214) /locus_tag="STM1053" /db_xref="GeneID:1252571" CDS complement(1141575..1142201) /locus_tag="STM1053" /note="similar to E. coli orf, hypothetical protein (AAC74998.1); Blastp hit to AAC74998.1 (217 aa), 85% identity in aa 1 - 178" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460027.1" /db_xref="GI:16764412" /db_xref="GeneID:1252571" /translation="MCGRFAQAQTREEYLAYLADEADRNIAYDPQPIGRYNVAPGTKV LLLSERDEQLHLDPVIWGYAPGWWDKAPLINARVATAASSRMFKPLWQHGRAICFADR WFEWKKEGDKKQPYFIHRKDGKPIFMAAIGSTPFERGDEAEGFLIVTSAADKGLVDIH DRRPLALTPETARVWMRQFLEPHSKSITYRVIPALTRPMMRKDTNPCQ" regulatory complement(1142209..1142214) /regulatory_class="ribosome_binding_site" /locus_tag="STM1053" /note="putative RBS for STM1053; RegulonDB:STMS1H001332" gene complement(1142270..1142575) /locus_tag="STM1054" /db_xref="GeneID:1252572" CDS complement(1142270..1142569) /locus_tag="STM1054" /note="hypothetical protein (gi|5410523)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460028.1" /db_xref="GI:16764413" /db_xref="GeneID:1252572" /translation="MYHFMIVNLYQDNYSGYRQHGGAEVQILSCRPKFPLKTSLSGLF FLWLNFLRGSYGVKLGNKAVEIRRNLRLIHQFAHCSVSEFINTQIFISNYCINSL" gene complement(1142554..1143243) /locus_tag="STM1055" /db_xref="GeneID:1252573" CDS complement(1142554..1143240) /locus_tag="STM1055" /note="hypothetical protein (gi|5410522)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460029.1" /db_xref="GI:16764414" /db_xref="GeneID:1252573" /translation="MLRHIQNSLGSVYRSNTATPQGQIIHHRNFQSQFDTTGNTLYNN CWVCSLNVIKSRDGNNYSALEDITSDNQAFNNILEGIDIIECENLLKEMNVQKIPESS LFTNIKEALQAEVFNSTVEDDFESFISYELQNHGPLMLIRPSLGSECLHAECIVGYDS EVKKVLIYDSMNTSPEWQSNIDVYDKLTLAFNDKYKNEDCSICGLYYDGVYEPKPLHS SSWKDWCTIL" regulatory complement(1142570..1142575) /regulatory_class="ribosome_binding_site" /locus_tag="STM1054" /note="putative RBS for STM1054; RegulonDB:STMS1H001333" regulatory complement(1143238..1143243) /regulatory_class="ribosome_binding_site" /locus_tag="STM1055" /note="putative RBS for STM1055; RegulonDB:STMS1H001334" gene complement(1143511..1143702) /locus_tag="STM1056" /db_xref="GeneID:1252574" CDS complement(1143511..1143702) /locus_tag="STM1056" /note="similar to msgA; hypothetical protein (gi|5410521)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460030.1" /db_xref="GI:16764415" /db_xref="GeneID:1252574" /translation="MFVELVYDKRNVEGLEGASEIILAELTKQVHQIFPDAEVRVKPM QANCLNSDTNKSDRENLNR" gene 1144119..1146741 /gene="pepN" /locus_tag="STM1057" /db_xref="GeneID:1252575" regulatory 1144119..1144124 /regulatory_class="ribosome_binding_site" /gene="pepN" /locus_tag="STM1057" /note="putative RBS for pepN; RegulonDB:STMS1H001335" CDS 1144129..1146741 /gene="pepN" /locus_tag="STM1057" /EC_number="3.4.11.2" /note="similar to E. coli aminopeptidase N (AAC74018.1); Blastp hit to AAC74018.1 (870 aa), 94% identity in aa 1 - 870" /codon_start=1 /transl_table=11 /product="aminopeptidase N" /protein_id="NP_460031.1" /db_xref="GI:16764416" /db_xref="GeneID:1252575" /translation="MTQQPQAKYRHDYRAPDYQITDIDLTFDLDAEKTVVTAISQAVR HGAPDAPLRLDGEDLTLVSIHVNDAPWTAYKEEEGALVISDLPERFTLRIVNEISPAA NTALEGLYQSGDALCTQCEAEGFRHITWYLDRPDVLARFTTKIIADKSKYPFLLSNGN RVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRG NLDRAPWAMTSLKNSMKWDEARFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYV LARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDL GSRAVNRISNVRTMRGLQFAEDASPMAHPIRPDKVIEMNNFYTLTVYEKGAEVIRMIH TLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHFRRWYSQSGTPIVTV KDDYNPETEQYTLTISQRTPATADQAEKQPLHIPFAIELYDNEGNVIPLQKGGHPVNA VLNVTQAEQTFTFDNVYFQPVPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWD AAQSLLATYIKLNVARHQQGQPLSLPVHVADAFRAVLLDEKIDPALAAEILTLPSANE IAELFEVIDPIAIAQVREALTRTLAAELADEFLAIYNANHLDEYRVDHGDIGKRTLRN ACLRFLAFGETELANTLVSKQYRDANNMTDALAALSAAVAAQLPCRDTLMQEYDDKWH QDGLVMDKWFILQSTSPAENVLETVRGLLKHRSFSMSNPNRIRSLIGAFAGSNPAAFH AQDGSGYQFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDDKRQEKMRAALEQLKGLEN LSGDLYEKITKALA" protein_bind 1146850..1146866 /note="putative binding site for PurR, RegulonDB: STMS1H000350" /bound_moiety="PurR" gene 1146875..1147959 /gene="pyrD" /locus_tag="STM1058" /db_xref="GeneID:1252576" regulatory 1146875..1146883 /regulatory_class="minus_35_signal" /gene="pyrD" /locus_tag="STM1058" /note="putative -35_signal for pyrD; RegulonDB:STMLTH004465" regulatory 1146903..1146911 /regulatory_class="minus_10_signal" /gene="pyrD" /locus_tag="STM1058" /note="putative -10_signal for pyrD; RegulonDB:STMLTH004465" regulatory 1146938..1146943 /regulatory_class="ribosome_binding_site" /gene="pyrD" /locus_tag="STM1058" /note="putative RBS for pyrD; RegulonDB:STMS1H001336" CDS 1146949..1147959 /gene="pyrD" /locus_tag="STM1058" /EC_number="1.3.98.1" /note="dihydroorotate dehydrogenase. (SW:PYRD_SALTY)" /codon_start=1 /transl_table=11 /product="dihydroorotate dehydrogenase (quinone)" /protein_id="NP_460032.1" /db_xref="GI:16764417" /db_xref="GeneID:1252576" /translation="MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPLEALVRQKVPT KPVTCMGLTFKNPLGLAAGLDKDGECIDALGAMGFGSLEIGTVTPRPQPGNDKPRLFR LVDAEGLINRMGFNNLGVDNLVENVKKAHFDGILGINIGKNKDTPVENGKDDYLICME KVYAYAGYIAINISSPNTPGLRTLQYGDALDDLLTAIKNKQNDLQAIHHKYVPVAVKI APDLCEEELIQVADSLLRHNIDGVIATNTTLDRSLVQGMKNCQQTGGLSGRPLQLKST EIIRRLSQELKGQLPIIGVGGIDSVIAAREKIAAGATLVQIYSGFIFKGPPLIKEIVT HI" gene 1148119..1148667 /gene="ycbW" /locus_tag="STM1059" /db_xref="GeneID:1252577" regulatory 1148119..1148124 /regulatory_class="ribosome_binding_site" /gene="ycbW" /locus_tag="STM1059" /note="putative RBS for ycbW; RegulonDB:STMS1H001337" CDS 1148125..1148667 /gene="ycbW" /locus_tag="STM1059" /note="similar to E. coli orf, hypothetical protein (AAC74032.1); Blastp hit to AAC74032.1 (192 aa), 90% identity in aa 13 - 192" /codon_start=1 /transl_table=11 /product="cell division protein ZapC" /protein_id="NP_460033.1" /db_xref="GI:16764418" /db_xref="GeneID:1252577" /translation="MRIKPDDNWRWYYDEEHDRMMLDLANGMLFRSRFSRKMLTPDAF CPTGFCVDDAALYFSFEEKCRDFELTKEQRAELVLNALVAIRYLKPQMPKSWHFVAHG EMWTPGTGDAASVWLSDTAEQVNLLVVEPGENAALCLLAQPGVVIAGRTMQLGDAIKI MNDRLKPQVHCHSFSLEQAV" gene complement(1148664..1149786) /locus_tag="STM1060" /db_xref="GeneID:1252578" CDS complement(1148664..1149773) /locus_tag="STM1060" /note="similar to E. coli orf, hypothetical protein (AAC74033.1); Blastp hit to AAC74033.1 (369 aa), 86% identity in aa 1 - 367" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460034.1" /db_xref="GI:16764419" /db_xref="GeneID:1252578" /translation="MATLSRLFIHPVKSMRGIGLTHALADISGLAFDRIFMVTEPDGT FITARQFPQMVRFTPSPLHDGLHLTAPDGSSALVRFTDFTPQDAPTEVWGNHFTARVA PTAINQWLSGFFSRDVQLRWVGPQLTRRVKRHNAVPLGFADGYPYLLTNEASLRDLQQ RCPAGVQMEQFRPNLVVSGVAAWEEDSWKVLRIGDVIFDVVKPCSRCIFTTVSPEKGQ KHPSGEPLATLQAFRTALDNGDVDFGQNLIARNSGVIRVGDEVEILATAPAKAYGATT VDNSVTPEKHPDASVTIDWQGQTFCGNNQQVLLEQLENQGIRIPYSCRAGICGCCRIR LLEGEVSPLKKSAMGDDGTILSCSCVPKTALRLEN" regulatory complement(1149781..1149786) /regulatory_class="ribosome_binding_site" /locus_tag="STM1060" /note="putative RBS for STM1060; RegulonDB:STMS1H001338" gene 1149872..1151980 /gene="ycbY" /locus_tag="STM1061" /db_xref="GeneID:1252579" CDS 1149872..1151980 /gene="ycbY" /locus_tag="STM1061" /note="similar to E. coli putative oxidoreductase (AAC74034.1); Blastp hit to AAC74034.1 (702 aa), 92% identity in aa 1 - 702" /codon_start=1 /transl_table=11 /product="23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase" /protein_id="NP_460035.1" /db_xref="GI:16764420" /db_xref="GeneID:1252579" /translation="MNSLFASTARGLEELLKTELEKLGAVGCQVVQGGVHFQGDTRLI YQSLMWSRLASRIILPMGECKVYSDLDLYLGVQAINWTEIFNPGATFAVHFSGLNDTI RNSQYGAMKVKDAIVDAFTRKNLPRPNVDRESPDLRINVWLNKETASIALDLSGDGLH LRGYRDRTGLAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMWATDRAPGL HRGHWGFSGWAQHDETIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIERARSNAR RAGIGELITFEVKDVAQLSNPLPKGPYGTVISNPPYGERLDSEPALIALHSLLGRTMK NQFGGWNLSLFSASPDLLGSLQLRADKQFKAKNGPLDCVQKNYHIAETTADSKPATVA EDYANRLRKNLKKLEKWARQEGIECYRLYDADLPEYNVAVDRYGDWAVIQEYAPPKTV DAQKARQRLFDIIAATLSVLGIPPNKLVLKTRERQKGKNQYQKMSEKGEFLEVSEYNA RLWVNLTDYLDTGLFLDHRIARRMLGEMSKGKDFLNLFSYTGSASVHAGLGGARSTTT VDMSRTYLEWAERNLRLNGLSGRAHRLIQADCLGWLREANEQFDLIFIDPPTFSNSKR MEESFDVQRDHVALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELGLTAQEITQKT LSPDFARNRQIHNCWLIRAA" gene 1151981..1153900 /gene="uup" /locus_tag="STM1062" /db_xref="GeneID:1252580" regulatory 1151981..1151986 /regulatory_class="ribosome_binding_site" /gene="uup" /locus_tag="STM1062" /note="putative RBS for uup; RegulonDB:STMS1H001339" CDS 1151993..1153900 /gene="uup" /locus_tag="STM1062" /note="contains duplicated ATPase domain; similar to E. coli putative ATP-binding component of a transport system (AAC74035.1); Blastp hit to AAC74035.1 (635 aa), 94% identity in aa 1 - 634" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_460036.1" /db_xref="GI:16764421" /db_xref="GeneID:1252580" /translation="MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKST LMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNIAGSVYDFVAEGIEEQAEYLKRYH EISRLVMTDPSEKNLNEMARVQEQLDHHNLWQLENRINEVLAQLGLDPNAALSSLSGG WLRKAALGRALVSNPRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRN MATRIVDLDRGKLVTYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKA RRTRNEGRVRALKAMRRERSERREVMGTAKMQVEEATRSGKIVFEMENVDYQVEGKQL VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRA ELDPEKTVMDNLAEGKQEVMVNGKPRHVLGYLQDFLFHPKRAMTPVRALSGGERNRLL LARLFLKPSNLLILDEPTNDLDVETLELLEELIDGYQGTVLLVSHDRQFVDNTVTECW IFEGGGKIGRYIGGYHDARAQQEQHLATKQPMAKKNEEVIAPKAEIVKRGSSKLSYKL QRELEQLPGQLEDLEAKLEALQAQVADAAFFSQPHEQTQKVLADLSQAEQELEQAFER WEYLEGLKNGA" gene 1153904..1155168 /gene="pqiA" /locus_tag="STM1063" /db_xref="GeneID:1252581" regulatory 1153904..1153909 /regulatory_class="ribosome_binding_site" /gene="pqiA" /locus_tag="STM1063" /note="putative RBS for pqiA; RegulonDB:STMS1H001340" CDS 1153915..1155168 /gene="pqiA" /locus_tag="STM1063" /note="similar to E. coli paraquat-inducible protein A (AAC74036.1); Blastp hit to AAC74036.1 (417 aa), 89% identity in aa 1 - 417" /codon_start=1 /transl_table=11 /product="paraquat-inducible protein A" /protein_id="NP_460037.1" /db_xref="GI:16764422" /db_xref="GeneID:1252581" /translation="MCEHHHAAKHILCPQCDMLVALPRLSHGQKAACPRCGATLTTEW DAPRQRPTAYALAALFMLLLSNLFPFVNMNVAGVTSEVTLLEIPGVMFSEDYASLGTF FLLFVQLVPAFCLVTILLLVNRASLPLSVKKTLARIFFLLKSWGMAEIFLAGVLVSFV KLMAYGDIGIGSSFIPWCLFCLVQLRAFQCVDRRWLWDDIAPQPALAQPLTPGITGIR QSLRSCACCTAILPAESLVCPRCHTKGYVRRKNSLQWTLALLFTSIMLYLPANILPIM ITDLLGSKMPSTILAGVILLWSEGSYPVAAVIFLASIMVPTLKMIAIAWLCWDAKGHG KRDSERMHFIYEVVEFVGRWSMIDVFVIAVLSALVRMGGLMNIYPAMGALMFALVVIM TMFSAMTFDPRLSWDREYEPGHEES" gene 1155157..1156813 /gene="pqiB" /locus_tag="STM1064" /db_xref="GeneID:1252582" regulatory 1155157..1155162 /regulatory_class="ribosome_binding_site" /gene="pqiA" /locus_tag="STM1063" /note="putative RBS for pqiB; RegulonDB:STMS1H001341" CDS 1155173..1156813 /gene="pqiB" /locus_tag="STM1064" /note="similar to E. coli paraquat-inducible protein B (AAC74037.1); Blastp hit to AAC74037.1 (546 aa), 89% identity in aa 1 - 546" /codon_start=1 /transl_table=11 /product="paraquat-inducible protein B" /protein_id="NP_460038.1" /db_xref="GI:16764423" /db_xref="GeneID:1252582" /translation="MEPKKGEAKVQKVKNWSPVWIFPIVTALIGAWILFYHYSHQGPE VTLITTNAEGIEGGKTTIKSRSVDVGVVESATLTDDLTHVQIKARLHSGMEKLLHKDS VFWVVKPQVGREGISGLGTLLSGAYIELQPGSKGSQPESYQLLDSPPLAPPDAKGIRV ILDSKKAGQLSPGDPVLFRGYRVGSVETSSFDPQKRTMSYQLFIKAPNDRLVTSNVRF WKDSGIAVDLTSAGMRVEMGSLTTLFGGGVSFDVPEGLEQGQPVAEKTAFNLYDDQKS IQDSLYTDHIDYLMFFKDSVRGLQPGAPLEFRGIRLGTVSKVPFFASKMRQVFNDDYR IPVLVRIEPERLKAQLGENADVGAHLTELLKRGLRASLKTGNLVTGALYVDLDFYPKE PPITGLREFDGYEIIPTVSSGLAQIQQRLVETLDKINNLPLNPMIEQATNTLSESQRT MRRLQTTLDNMNKITSSQSMQQLPADMQTTLRELNRSMQGFQPGSAAYNKMVADMQRL DQVLRELQPVLKTLNEKSNALVFEAKDKKDPEPKRAKQ" gene 1156798..1157373 /gene="ymbA" /locus_tag="STM1065" /db_xref="GeneID:1252583" regulatory 1156798..1156803 /regulatory_class="ribosome_binding_site" /gene="ymbA" /locus_tag="STM1065" /note="putative RBS for ymbA; RegulonDB:STMS1H001342" CDS 1156810..1157373 /gene="ymbA" /locus_tag="STM1065" /note="similar to E. coli orf, hypothetical protein (AAC74038.1); Blastp hit to AAC74038.1 (182 aa), 83% identity in aa 1 - 182" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460039.1" /db_xref="GI:16764424" /db_xref="GeneID:1252583" /translation="MKKWLVVIMAFWLASCSSGGENKSYYQLPIAQSGVQSTASQGNR LLWVEQVSVPDYLAGNGVVYQTSDVQYVIANNNLWASPLDQQLRNTLVANLSARLPGW VVASQPLGTTQDTLNVTVTGFHGRYDGKVIVSGEWLLNHNGQLIKRPFHIEASQQKDG YDEMVKVLASAWSQEAAAIADEIKRLP" gene 1157615..1157796 /gene="rmf" /locus_tag="STM1066" /db_xref="GeneID:1252584" regulatory 1157615..1157620 /regulatory_class="ribosome_binding_site" /gene="rmf" /locus_tag="STM1066" /note="putative RBS for rmf; RegulonDB:STMS1H001343" CDS 1157629..1157796 /gene="rmf" /locus_tag="STM1066" /note="similar to E. coli ribosome modulation factor (AAC74039.1); Blastp hit to AAC74039.1 (55 aa), 92% identity in aa 1 - 55" /codon_start=1 /transl_table=11 /product="ribosome modulation factor" /protein_id="NP_460040.1" /db_xref="GI:16764425" /db_xref="GeneID:1252584" /translation="MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSYWLGGW RQAMEDRAVMA" gene complement(1157896..1158479) /gene="fabA" /locus_tag="STM1067" /db_xref="GeneID:1252585" CDS complement(1157896..1158414) /gene="fabA" /locus_tag="STM1067" /EC_number="4.2.1.59" /note="trans-2-decenoyl-ACP isomerase; similar to E. coli beta-hydroxydecanoyl thioester dehydrase, trans-2-decenoyl-ACP isomerase (AAC74040.1); Blastp hit to AAC74040.1 (172 aa), 98% identity in aa 1 - 172" /codon_start=1 /transl_table=11 /product="3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA" /protein_id="NP_460041.1" /db_xref="GI:16764426" /db_xref="GeneID:1252585" /translation="MVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMT ETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEG KGRALGVGEVKFTGQVLPTARKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTAHD LKVGLFQDTSAF" regulatory complement(1158425..1158430) /regulatory_class="ribosome_binding_site" /gene="fabA" /locus_tag="STM1067" /note="putative RBS for fabA; RegulonDB:STMS1H001344" regulatory complement(1158455..1158463) /regulatory_class="minus_10_signal" /gene="fabA" /locus_tag="STM1067" /note="putative -10_signal for fabA; RegulonDB:STMLTH004466" protein_bind complement(1158468..1158486) /note="putative binding site for FadR, RegulonDB: STMS1H000179" /bound_moiety="FadR" regulatory complement(1158471..1158479) /regulatory_class="minus_35_signal" /gene="fabA" /locus_tag="STM1067" /note="putative -35_signal for fabA; RegulonDB:STMLTH004466" gene complement(1158483..1160243) /gene="lonH" /locus_tag="STM1068" /db_xref="GeneID:1252586" CDS complement(1158483..1160243) /gene="lonH" /locus_tag="STM1068" /EC_number="3.4.21.-" /note="similar to E. coli putative ATP-dependent protease (AAC74041.1); Blastp hit to AAC74041.1 (586 aa), 85% identity in aa 1 - 586" /codon_start=1 /transl_table=11 /product="Lon protease" /protein_id="NP_460042.1" /db_xref="GI:16764427" /db_xref="GeneID:1252586" /translation="MTITKLAWRDLVPDSESYQEIFAQPHATDENDTLLSDTQPRLQF ALEQLIQPWASSSFMLTKAPEEQEYLTLLSDAVRALQTDAGQLTGGHYDVSGHTVHYR AAQNAQDNFATVTQVVSADWVEAEQLFGCLRQYNGDITLQPGLVHQANGGVLIISLRT LLAQPLLWMRLKAIVSRERFDWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQE MEPELAEQAIYSEFEDNLQIADAEAMTLWCQWVTRIALRDNLPPPAPDAWPVLIREAV RYTGEQDTLPLCPLWIARQFKEASPLCEGDTCGAEALSLMLARREWREGFLAERMQDE ILQEQILIETEGERVGQINALSVIEFPGHPRAFGEPSRISCVVHIGDGEFNDIERKAE LGGNIHAKGMMIMQAFLMSELQLEQQIPFSASLTFEQSYSEVDGDSASMAELCALISA LANVPVNQNIAITGSVDQFGRAQPVGGLNEKIEGFFAICEQRELNGKQGVIIPAANVR HLSLKSELLQAVKEEKFTIWAVDDVTDALPLLLNLVWDGEGQTTLMQTIQERIAQATQ QEGRHRFPWPLRWLNAFIPN" gene 1160409..1160881 /gene="ycbG" /locus_tag="STM1069" /db_xref="GeneID:1252587" regulatory 1160409..1160414 /regulatory_class="ribosome_binding_site" /gene="ycbG" /locus_tag="STM1069" /note="putative RBS for ycbG; RegulonDB:STMS1H001345" CDS 1160429..1160881 /gene="ycbG" /locus_tag="STM1069" /note="similar to E. coli putative dehydrogenase (AAC74042.1); Blastp hit to AAC74042.1 (150 aa), 89% identity in aa 1 - 150" /codon_start=1 /transl_table=11 /product="Ter macrodomain-binding protein MatP" /protein_id="NP_460043.1" /db_xref="GI:16764428" /db_xref="GeneID:1252587" /translation="MKYQQLENLESGWKWKYLVKKHREGELITRYVEASAAQEAVNLL LALENEPVRVNVWIDRHMNPALLNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFMVWQ RLAGLAQRRGKTLSETIVQLIEDAEHKEKYATQMTTLKQDLQALLGKK" gene complement(1160953..1162133) /gene="ompA" /locus_tag="STM1070" /db_xref="GeneID:1252588" CDS complement(1160953..1162005) /gene="ompA" /locus_tag="STM1070" /note="outer membrane protein a precursor (outer membrane protein 33K) (outermembrane major heat-modifiable protein). (SW:OMPA_SALTY)" /codon_start=1 /transl_table=11 /product="porin OmpA" /protein_id="NP_460044.1" /db_xref="GI:16764429" /db_xref="GeneID:1252588" /translation="MKKTAIAIAVALAGFATVAQAAPKDNTWYAGAKLGWSQYHDTGF IHNDGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGDNINGAYKAQGVQLTA KLGYPITDDLDVYTRLGGMVWRADTKSNVPGGPSTKDHDTGVSPVFAGGIEYAITPEI ATRLEYQWTNNIGDANTIGTRPDNGLLSVGVSYRFGQQEAAPVVAPAPAPAPEVQTKH FTLKSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQG LSEKRAQSVVDYLISKGIPSDKISARGMGESNPVTGNTCDNVKPRAALIDCLAPDRRV EIEVKGVKDVVTQPQA" regulatory complement(1162012..1162017) /regulatory_class="ribosome_binding_site" /gene="ompA" /locus_tag="STM1070" /note="putative RBS for ompA; RegulonDB:STMS1H001346" regulatory complement(1162106..1162114) /regulatory_class="minus_10_signal" /gene="ompA" /locus_tag="STM1070" /note="putative -10_signal for ompA; RegulonDB:STMLTH004467" regulatory complement(1162125..1162133) /regulatory_class="minus_35_signal" /gene="ompA" /locus_tag="STM1070" /note="putative -35_signal for ompA; RegulonDB:STMLTH004467" protein_bind complement(1162170..1162190) /note="putative binding site for CRP, RegulonDB: STMS1H000091" /bound_moiety="CRP" gene complement(1162362..1163017) /gene="sulA" /locus_tag="STM1071" /db_xref="GeneID:1252589" CDS complement(1162362..1162871) /gene="sulA" /locus_tag="STM1071" /note="inhibitor of cell division and FtsZ ring formation upon DNA damage/inhibition; HslVU and Lon involved in its turnover; cell division inhibitor (SW:SULA_SALTY)" /codon_start=1 /transl_table=11 /product="cell division inhibitor SulA" /protein_id="NP_460045.1" /db_xref="GI:16764430" /db_xref="GeneID:1252589" /translation="MYTSGYANRSSSFPTTTHNAARTATENAAAGLVSEVVYHEDQPM MAQLLLLPLLRQLGQQSRWQLWLTPQQKLSREWVQSSGLPLTKVMQISQLAPRHTLES MIRALRTGNYSVVIGWMTEELTEEEHASLVEAAKVGNAVGFIMRPVRAHALPRRQHSG LKIHSNLYH" regulatory complement(1162877..1162882) /regulatory_class="ribosome_binding_site" /gene="sulA" /locus_tag="STM1071" /note="putative RBS for sulA; RegulonDB:STMS1H001347" protein_bind complement(1162890..1162912) /gene="sulA" /locus_tag="STM1071" /note="putative binding site for LexA, RegulonDB: STMS1H000248" /bound_moiety="LexA" regulatory complement(1162990..1162998) /regulatory_class="minus_10_signal" /gene="sulA" /locus_tag="STM1071" /note="putative -10_signal for sulA; RegulonDB:STMLTH004468" regulatory complement(1163009..1163017) /regulatory_class="minus_35_signal" /gene="sulA" /locus_tag="STM1071" /note="putative -35_signal for sulA; RegulonDB:STMLTH004468" gene 1163078..1163693 /gene="yccR" /locus_tag="STM1072" /db_xref="GeneID:1252590" regulatory 1163078..1163083 /regulatory_class="ribosome_binding_site" /gene="yccR" /locus_tag="STM1072" /note="putative RBS for yccR; RegulonDB:STMS1H001348" CDS 1163088..1163693 /gene="yccR" /locus_tag="STM1072" /note="similar to E. coli orf, hypothetical protein (AAC74045.1); Blastp hit to AAC74045.1 (209 aa), 75% identity in aa 1 - 199" /codon_start=1 /transl_table=11 /product="Crp/Fnr family transcriptional regulator" /protein_id="NP_460046.1" /db_xref="GI:16764431" /db_xref="GeneID:1252590" /translation="MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVA NGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLNYYRVDESLWRDQQQLVRLSKYS LDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG" gene complement(1163680..1165833) /gene="yccS" /locus_tag="STM1073" /db_xref="GeneID:1252591" CDS complement(1163680..1165833) /gene="yccS" /locus_tag="STM1073" /note="similar to E. coli orf, hypothetical protein (AAC74046.1); Blastp hit to AAC74046.1 (720 aa), 88% identity in aa 4 - 710" /codon_start=1 /transl_table=11 /product="TIGR01666 family membrane protein" /protein_id="NP_460047.1" /db_xref="GI:16764432" /db_xref="GeneID:1252591" /translation="MLSPLIRRYTWNSTWLYYIRIFIALCGTTALPWWLGDVKLTIPL TLGMVAAALTDLDDRLAGRLRNLIITLICFFIASASVELLFPWPWLFALGLTLSTSGF ILLGGLGQRYATIAFGALLIAIYTMLGTSLYDHWYQQPLLLLAGAVWYNLLTLTGHLL FPIRPLQDNLARSYEQLAHYLELKSRLFDPDIEDESQAPLYDLALANGQLMATLNQTK VSLLTRLRGDRGQRGTRRTLHYYFVAQDIHERASSSHIQYQTLRDYFRHSDVMFRFQR LMSMQAQACTQLARCILLRTPYQHDPRFERVFTHIDAALERMRASGASLELLNTLGFL LTNLRAIDAQLATIESEQAQAMPRNESENQLADDSLHGFSDIWLRLSRNFTPESALFR HAVRMSLVLCIGYALIQITGMRHGYWILLTSLFVCQPNYNATRHRLALRIIGTLVGVA IGLPILWFVPSLEGQLVLLVITGVLFFAFRNVQYAHATMFITLLVLLCFNLLGEGFEV ALPRVVDTLIGCAIAWAAVSFIWPDWRFRNLPRVLQRATDANCRYLDAILEQYHQGRD NRLAYRIARRDAHNRDAELASVVSNMSSEPDVTAETREAAFRLLCLNHTFTSYISALG AHREKLSNPDVLGLLDDAVCYVDDALHHQPEDEQRVHQALEGLKQRVQSLETRPDSKE PLVVQQIGLLIALLPEIGRLQRQISPPISTLITQP" gene complement(1165852..1166318) /gene="yccF" /locus_tag="STM1074" /db_xref="GeneID:1252592" CDS complement(1165852..1166298) /gene="yccF" /locus_tag="STM1074" /note="similar to E. coli orf, hypothetical protein (AAC74047.1); Blastp hit to AAC74047.1 (148 aa), 92% identity in aa 1 - 148" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460048.1" /db_xref="GI:16764433" /db_xref="GeneID:1252592" /translation="MRTVLNILNFVLGGFATTLAWLLATLVSIVLIFTLPLTRSCWEI TKLSLFPYGNEAIHVDELNPAAKSVLMNTGGTLLNIFWLLFFGWWLCLMHIASGIAQC VTIIGIPVGIANFKIAAIALWPVGRRVVSVETARAAREANARRRFE" regulatory complement(1166313..1166318) /regulatory_class="ribosome_binding_site" /gene="yccF" /locus_tag="STM1074" /note="putative RBS for yccF; RegulonDB:STMS1H001349" gene 1166406..1168476 /gene="helD" /locus_tag="STM1075" /db_xref="GeneID:1252593" regulatory 1166406..1166411 /regulatory_class="ribosome_binding_site" /gene="helD" /locus_tag="STM1075" /note="putative RBS for helD; RegulonDB:STMS1H001350" CDS 1166422..1168476 /gene="helD" /locus_tag="STM1075" /EC_number="3.6.1.-" /note="similar to E. coli DNA helicase IV (AAC74048.1); Blastp hit to AAC74048.1 (684 aa), 83% identity in aa 1 - 684" /codon_start=1 /transl_table=11 /product="DNA helicase IV" /protein_id="NP_460049.1" /db_xref="GI:16764434" /db_xref="GeneID:1252593" /translation="MELKATSLGKRLAQHPYDRAEILNAGVKVSGDRHEYLIPFNQLL AIHCKRGLVWGELEFVLPEDKVVRLHGTEWSETQQFHRYLDAHWRRWSQEMSDVAAQA LQEQWARISERTGGNQWLTRERVRGLEHEIRQTFAALPLPVSRLEEFAHCREIWRKCL AWLQDSEGSRQQHNQAYADAMLEAHADFFTQIESSPLNPSQARAVVNGESSLLVLAGA GSGKTSVLVARAGWLLARGQADAGQILLLAFGRKAAEEMDERIRERLHTEEITARTFH SLALYIIQQGSKKAPVVSKLESDATARHQLFLRTWRQQCSEKKAQAKGWRQWLEEEMQ WVVPEGNFWDDETLQRRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKRIKLM APLLKAWKSALKAENAVDFSGLIHQAMVILEKGRFISPWKHILVDEFQDISPQRAALL EALRKQNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTFGEGEHCHLDTTYRFNSRI GDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQLDALLDKLSGYAKEDERILVL ARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQADYVILVGLQEGNDGFPAPARES IMESALLPQVEDFPDAEERRLLYVALTRARARVWLLFNKDNPSRFVEALKQLDVPVAR KP" gene complement(1168512..1168983) /gene="mgsA" /locus_tag="STM1076" /db_xref="GeneID:1252594" CDS complement(1168512..1168970) /gene="mgsA" /locus_tag="STM1076" /EC_number="4.2.3.3" /note="similar to E. coli methylglyoxal synthase (AAC74049.1); Blastp hit to AAC74049.1 (155 aa), 94% identity in aa 4 - 155" /codon_start=1 /transl_table=11 /product="methylglyoxal synthase" /protein_id="NP_460050.1" /db_xref="GI:16764435" /db_xref="GeneID:1252594" /translation="MELTTRTLPTRKHIALVAHDHCKQMLMNWVERHQPLLEKHVLYA TGTTGNLIQRATGMDVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDV KALLRLATVWNIPVATNVSTADFIIQSPHFNDAVDILIPDYARYLAERLK" regulatory complement(1168978..1168983) /regulatory_class="ribosome_binding_site" /gene="mgsA" /locus_tag="STM1076" /note="putative RBS for mgsA; RegulonDB:STMS1H001351" gene complement(1169065..1169739) /gene="yccT" /locus_tag="STM1077" /db_xref="GeneID:1252595" CDS complement(1169065..1169727) /gene="yccT" /locus_tag="STM1077" /note="similar to E. coli orf, hypothetical protein (AAC74050.1); Blastp hit to AAC74050.1 (220 aa), 84% identity in aa 1 - 220" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460051.1" /db_xref="GI:16764436" /db_xref="GeneID:1252595" /translation="MKTGALATFLALCLPVTVFATTLRLSNEVDLLVLDGKKVSSSLL RGAESIELENGPHQLVFRVEKTIRLPGNEERLYISPPLVISFDTQLISQVNFQLPRLE NEREASHFNAAPRLALLDGDAMPIPVKLDILAITSTAKVVDYEIETERYNKSAKRASL PQFATMMADDSTLLSDVSELDTVPPQSQTLTEQRLKYWFRLADPQTRHHFLQWAEKQP PS" regulatory complement(1169734..1169739) /regulatory_class="ribosome_binding_site" /gene="yccT" /locus_tag="STM1077" /note="putative RBS for yccT; RegulonDB:STMS1H001352" gene 1169888..1170314 /locus_tag="STM1078" /db_xref="GeneID:1252596" regulatory 1169888..1169893 /regulatory_class="ribosome_binding_site" /locus_tag="STM1078" /note="putative RBS for STM1078; RegulonDB:STMS1H001353" CDS 1169898..1170314 /locus_tag="STM1078" /note="similar to E. coli orf, hypothetical protein (AAC74051.1); Blastp hit to AAC74051.1 (164 aa), 91% identity in aa 27 - 164" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460052.1" /db_xref="GI:16764437" /db_xref="GeneID:1252596" /translation="MMKETDIADVLTSTRTIALVGASDKPDRPSYRVMKYLLEQGYHV IPVAPKVAGKTLLGQQGYATLADIPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWLQ LGVINEQAAVLARDAGMTVVMDRCPAIEIPRLGLAK" gene complement(1170359..1170685) /gene="yccV" /locus_tag="STM1079" /db_xref="GeneID:1252597" CDS complement(1170359..1170676) /gene="yccV" /locus_tag="STM1079" /note="similar to E. coli orf, hypothetical protein (AAC74052.1); Blastp hit to AAC74052.1 (122 aa), 92% identity in aa 18 - 122" /codon_start=1 /transl_table=11 /product="heat-shock protein HspQ" /protein_id="NP_460053.1" /db_xref="GI:16764438" /db_xref="GeneID:1252597" /translation="MIASKFGIGQQVRHSLLGYLGVVVDIDPEYSLDEPSPDELAVND ELRAAPWYHVVMEDDDGQPVHTYLAEAQLRSEMRDEHPEQPSMDELARTIRKQLQAPR LRN" regulatory complement(1170680..1170685) /regulatory_class="ribosome_binding_site" /gene="yccV" /locus_tag="STM1079" /note="putative RBS for yccV; RegulonDB:STMS1H001354" gene complement(1170734..1171958) /gene="yccW" /locus_tag="STM1080" /db_xref="GeneID:1252598" CDS complement(1170734..1171945) /gene="yccW" /locus_tag="STM1080" /note="similar to E. coli putative oxidoreductase (AAC74053.1); Blastp hit to AAC74053.1 (367 aa), 93% identity in aa 1 - 367" /codon_start=1 /transl_table=11 /product="23S rRNA (cytosine(1962)-C(5))-methyltransferase" /protein_id="NP_460054.1" /db_xref="GI:16764439" /db_xref="GeneID:1252598" /translation="MTESTFPQYPRLVLSKGREKSLLRRHPWVFSGAVSRLEGKANLG ETIDIVDHQGKWLARGAWSPASQIRARVWTFDKAESIDIAFFTRRLRQAQQWRDWLAK KDGLDSYRLIAGESDGLPGVTIDRFGHFLVLQLLSAGAEYQRAALISALQTCYPDCAI YDRSDVAVRKKEGMALTQGPVTGELPPALLPIEEHGMKLLVDIQGGHKTGYYLDQRDS RLATRRYVENQRVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLD LSKAEFVRDDVFKLLRAYREHGEKFDVIIMDPPKFVENKSQLMGACRGYKDINMLAIQ LLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEG LYLKGFACRVM" regulatory complement(1171953..1171958) /regulatory_class="ribosome_binding_site" /gene="yccW" /locus_tag="STM1080" /note="putative RBS for yccW; RegulonDB:STMS1H001355" gene 1172149..1172708 /locus_tag="STM1081" /db_xref="GeneID:1252599" regulatory 1172149..1172154 /regulatory_class="ribosome_binding_site" /locus_tag="STM1081" /note="putative RBS for STM1081; RegulonDB:STMS1H001356" CDS 1172160..1172708 /locus_tag="STM1081" /note="similar to E. coli orf, hypothetical protein (AAC73646.1); Blastp hit to AAC73646.1 (183 aa), 59% identity in aa 1 - 180" /codon_start=1 /transl_table=11 /product="kinase inhibitor" /protein_id="NP_460055.1" /db_xref="GI:16764440" /db_xref="GeneID:1252599" /translation="MKTVFSLTAAAMMALSGGVSAASAFSLSSADIPADFRLTQQHVF KGFGCSGENISPQLSWRNPPAGTKSYAITVFDPDAPTGSGWWHWTMVNIPAQIHDLPT GADKKTLPAGVVQGRNDFGYAGFGGACPPPSDKPHRYQFTVWALNTATLPLDSESSGA LVGFMLNAHVIAKAKFTATYGR" gene 1172728..1173513 /locus_tag="STM1082" /db_xref="GeneID:1252600" regulatory 1172728..1172733 /regulatory_class="ribosome_binding_site" /locus_tag="STM1082" /note="putative RBS for STM1082; RegulonDB:STMS1H001357" CDS 1172734..1173513 /locus_tag="STM1082" /note="similar to E. coli putative ARAC-type regulatory protein (AAC73647.1); Blastp hit to AAC73647.1 (265 aa), 33% identity in aa 8 - 260" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="NP_460056.1" /db_xref="GI:16764441" /db_xref="GeneID:1252600" /translation="MHIRHQDLTTAEVRSSHLHRLHRVTLFSAAICHITQGSKVIIQD DSRLVAGPGELIIIPANTPLEIINQPAQNGFRSDLLLLSPEIIARFKTMYVQDYPPAN LTSLCTPMSRSLTFMWENVLDAVRQGLPVGLQEHQAMGLLLALLHDGAAGPLLIERRY TLTEQVRQLIMLSPAKLWTAQEIARRLAMGTSTLRRRLQRESQSYRQIVEEVRMSCAL SQLQSTTLPIGEIALRCGYLSGSRFTARFRQHYGCLPSQVR" gene 1173549..1173843 /gene="yccX" /locus_tag="STM1083" /db_xref="GeneID:1252601" regulatory 1173549..1173554 /regulatory_class="ribosome_binding_site" /gene="yccX" /locus_tag="STM1083" /note="putative RBS for yccX; RegulonDB:STMS1H001358" CDS 1173562..1173843 /gene="yccX" /locus_tag="STM1083" /EC_number="3.6.1.7" /note="similar to E. coli orf, hypothetical protein (AAC74054.1); Blastp hit to AAC74054.1 (92 aa), 78% identity in aa 1 - 92" /codon_start=1 /transl_table=11 /product="acylphosphatase" /protein_id="NP_460057.1" /db_xref="GI:16764442" /db_xref="GeneID:1252601" /translation="MSNVCIIAWVYGRVQGVGFRYTTQHEAQRLGLTGYAKNMDDGSV EVVACGDAAQVEKLIKWLKEGGPRSARVDKILTEPHSPRETLTGFSIRY" gene complement(1173840..1174179) /gene="yccK" /locus_tag="STM1084" /db_xref="GeneID:1252602" CDS complement(1173840..1174169) /gene="yccK" /locus_tag="STM1084" /EC_number="1.8.99.5" /note="similar to E. coli putative sulfite reductase (AAC74055.1); Blastp hit to AAC74055.1 (128 aa), 90% identity in aa 20 - 128" /codon_start=1 /transl_table=11 /product="sulfurtransferase TusE" /protein_id="NP_460058.1" /db_xref="GI:16764443" /db_xref="GeneID:1252602" /translation="MLIFEGKEISTDSEGYLKETTQWSEALAVAIAANEGIELSAEHW EVVRFVREFYLEFNTSPAIRMLVKAMANKFGEEKGNSRYLYRLFPKGPAKQATKIAGL PKPVKCI" regulatory complement(1174174..1174179) /regulatory_class="ribosome_binding_site" /gene="yccK" /locus_tag="STM1084" /note="putative RBS for yccK; RegulonDB:STMS1H001359" gene complement(1174256..1174915) /gene="yccA" /locus_tag="STM1085" /db_xref="GeneID:1252603" CDS complement(1174256..1174915) /gene="yccA" /locus_tag="STM1085" /note="similar to E. coli putative carrier/transport protein (AAC74056.1); Blastp hit to AAC74056.1 (219 aa), 94% identity in aa 1 - 219" /codon_start=1 /transl_table=11 /product="BAX inhibitor protein" /protein_id="NP_460059.1" /db_xref="GI:16764444" /db_xref="GeneID:1252603" /translation="MDRIITSSRDRSSLLSTHKVLRNTYFLLSLTLALSAITATASTV LMLPSPGLILTLVGMYGLMFLTYKTANKPVGILSAFAFTGFLGYILGPILNAYLSAGM GDVIGLALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPAL HLAISAVFILISSGAILYETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASR D" gene 1175309..1175393 /gene="serT" /locus_tag="STM1086" /db_xref="GeneID:1252604" tRNA 1175309..1175393 /gene="serT" /locus_tag="STM1086" /product="tRNA-Ser" /db_xref="GeneID:1252604" gene complement(1175536..1176224) /gene="pipA" /locus_tag="STM1087" /db_xref="GeneID:1252605" CDS complement(1175536..1176216) /gene="pipA" /locus_tag="STM1087" /codon_start=1 /transl_table=11 /product="virulence protein" /protein_id="NP_460060.1" /db_xref="GI:16764445" /db_xref="GeneID:1252605" /translation="MLPVTYRLIPQSGVSTYRLNTADTPVFPDIPEHAPNPSRLRLAH DSLAINSEFRLEPECVVEYLISGAGGIDPDTEIDDDTYDECYDELSSVLQNAYTQSET FRRLMNYAYEKELHDVEQRWLLGAGEAFETTVAQEHFKLSEGRKVICLNLDDSDDSYT EHYESNEGRQLFDTKRSFIHEVVHALTHLQDKEENHPRGPVVEYTNIILKEMGHPSPP RMVYIFNK" regulatory complement(1176219..1176224) /regulatory_class="ribosome_binding_site" /gene="pipA" /locus_tag="STM1087" /note="putative RBS for pipA; RegulonDB:STMS1H001360" gene complement(1176438..1177320) /gene="pipB" /locus_tag="STM1088" /db_xref="GeneID:1252606" CDS complement(1176438..1177313) /gene="pipB" /locus_tag="STM1088" /codon_start=1 /transl_table=11 /product="effector protein PipB" /protein_id="NP_460061.1" /db_xref="GI:16764446" /db_xref="GeneID:1252606" /translation="MPITNASPENILRYLHAAGTGTKEAMKSATSPRGILEWFVNFFT CGGVRRSNERWFREVIGKLTTSLLYVNKNAFFDGNKIFLEDVNGCTICLSCGAASENT DPMVIIEVNKNGKTVTDKVDSERFWNVCRMLKLMSKHNIQQPDSLITEDGFLNLRGVN LAHKDFQGEDLSKIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTH ADLTCANMSGVNLTAAILFGSDLTDTKLNGAKLDKIALTLAKALTGADLTGSQHTPTP LPDYNDRTLFPHPIF" regulatory complement(1177315..1177320) /regulatory_class="ribosome_binding_site" /gene="pipB" /locus_tag="STM1088" /note="putative RBS for pipB; RegulonDB:STMS1H001361" gene 1177531..1177851 /locus_tag="STM1089" /db_xref="GeneID:1252607" CDS 1177531..1177851 /locus_tag="STM1089" /codon_start=1 /transl_table=11 /product="Pathogenicity island encoded protein: SPI5" /protein_id="NP_460062.1" /db_xref="GI:16764447" /db_xref="GeneID:1252607" /translation="MTSFISSIAYASSSLNKQLSLLSENLLKEKIISTNIFCSISTYT RINARRWRKNLMSRNTYTLKMLPQTEQNERDERLPLTFPPKILVLSLVKGIRIAFYLI KKVC" gene complement(1177861..1178208) /gene="pipC" /locus_tag="STM1090" /db_xref="GeneID:1252608" CDS complement(1177861..1178202) /gene="pipC" /locus_tag="STM1090" /note="invasion gene E protein (gi|2582386)" /codon_start=1 /transl_table=11 /product="type III secretion chaperone protein SigE" /protein_id="NP_460063.1" /db_xref="GI:16764448" /db_xref="GeneID:1252608" /translation="MESLLNRLYDALGLDAPEDEPLLIIDDGIQVYFNESDHTLEMCC PFMPLPDDILTLQHFLRLNYTSAVTIGADADNTALVALYRLPQTSTEEEALTGFELFI SNVKQLKEHYA" regulatory complement(1178203..1178208) /regulatory_class="ribosome_binding_site" /gene="pipC" /locus_tag="STM1090" /note="similar to ipgE of Shigellaputative RBS for pipC; RegulonDB:STMS1H001362" gene complement(1178219..1179912) /gene="sopB" /locus_tag="STM1091" /db_xref="GeneID:1252609" CDS complement(1178219..1179904) /gene="sopB" /locus_tag="STM1091" /note="invasion gene D protein (gi|2582385)" /codon_start=1 /transl_table=11 /product="inositol phosphatase" /protein_id="NP_460064.1" /db_xref="GI:16764449" /db_xref="GeneID:1252609" /translation="MQIQSFYHSASLKTQEAFKSLQKTLYNGMQILSGQGKAPAKAPD ARPEIIVLREPGATWGNYLQHQKASNHSLHNLYNLQRDLLTVAATVLGKQDPVLTSMA NQMELAKVKADRPATKQEEAAAKALKKNLIELIAARTQQQDGLPAKEAHRFAAVAFRD AQVKQLNNQPWQTIKNTLTHNGHHYTNTQLPAAEMKIGAKDIFPSAYEGKGVCSWDTK NIHHANNLWMSTVSVHEDGKDKTLFCGIRHGVLSPYHEKDPLLRHVGAENKAKEVLTA ALFSKPELLNKALAGEAVSLKLVSVGLLTASNIFGKEGTMVEDQMRAWQSLTQPGKMI HLKIRNKDGDLQTVKIKPDVAAFNVGVNELALKLGFGLKASDSYNAEALHQLLGNDLR PEARPGGWVGEWLAQYPDNYEVVNTLARQIKDIWKNNQHHKDGGEPYKLAQRLAMLAH EIDAVPAWNCKSGKDRTGMMDSEIKREIISLHQTHMLSAPGSLPDSGGQKIFQKVLLN SGNLEIQKQNTGGAGNKVMKNLSPEVLNLSYQKRVGDENIWQSVKGISSLITS" regulatory complement(1179907..1179912) /regulatory_class="ribosome_binding_site" /gene="sopB" /locus_tag="STM1091" /note="putative RBS for sopB; RegulonDB:STMS1H001363" gene 1180229..1180406 /gene="orfX" /locus_tag="STM1092" /db_xref="GeneID:1252610" regulatory 1180229..1180234 /regulatory_class="ribosome_binding_site" /gene="orfX" /locus_tag="STM1092" /note="putative RBS for orfX; RegulonDB:STMS1H001364" CDS 1180236..1180406 /gene="orfX" /locus_tag="STM1092" /codon_start=1 /transl_table=11 /product="DUF3950 domain-containing protein" /protein_id="NP_460065.1" /db_xref="GI:16764450" /db_xref="GeneID:1252610" /translation="MPAKPRTSKTVTKNIRFSYSMLEQIEFALKSEKTRNFSAWVKEA CREKLCNTGHKL" gene complement(1180407..1180524) /locus_tag="STM1093" /db_xref="GeneID:1252611" CDS complement(1180407..1180517) /locus_tag="STM1093" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_447525.1" /db_xref="GI:1109557608" /db_xref="GeneID:1252611" /translation="MTLQANISRETKAAKTQEVYKHVVLFKMAAPSYIRR" regulatory complement(1180519..1180524) /regulatory_class="ribosome_binding_site" /locus_tag="STM1093" /note="putative RBS for STM1093; RegulonDB:STMS1H001365" gene complement(1180626..1182100) /gene="pipD" /locus_tag="STM1094" /db_xref="GeneID:1252612" CDS complement(1180626..1182095) /gene="pipD" /locus_tag="STM1094" /codon_start=1 /transl_table=11 /product="dipeptidase" /protein_id="NP_460067.1" /db_xref="GI:16764452" /db_xref="GeneID:1252612" /translation="MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGS ANNAKHKVIHPIAFHQQGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNS AGVGMSATETIYNGRAALAADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQ KGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANY MASPTLVSFAKKQGLYDPARGEFDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTV VSEGETFPVFLTPITKISVAAVKNALRNHYQGTSHDPYASHNPQEPWRPISVFRTQES HILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRHYQPGDDKGTDRASNDSTYWT FRTLQTLVMQDYNAFAPDVQHAWKTFEQQTAKQQYKMEQSYLRLYASHPKEAQRLLQN FEDKTMQNAQTLARRLTNNIITTMTYRTDMKYHFSSTQP" regulatory complement(1182095..1182100) /regulatory_class="ribosome_binding_site" /gene="pipD" /locus_tag="STM1094" /note="putative RBS for pipD; RegulonDB:STMS1H001366" gene complement(1182268..1183651) /gene="copS" /locus_tag="STM1095" /db_xref="GeneID:1252613" CDS complement(1182268..1183632) /gene="copS" /locus_tag="STM1095" /EC_number="2.7.3.-" /note="Pathogenicity island encoded protein: SPI5; similar to E. coli putative 2-component sensor protein (AAC75034.1); Blastp hit to AAC75034.1 (452 aa), 54% identity in aa 1 - 449" /codon_start=1 /transl_table=11 /product="two-component sensor histidine kinase" /protein_id="NP_447527.1" /db_xref="GI:1109557609" /db_xref="GeneID:1252613" /translation="MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMT LINRAAQMQQLLLDGARPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRF NEIPLTKNITRETLFRQAVQGTELTAVRVSARSGDDPLTLTIARLATERRQMLAQYRR NSLLMSLIAILVCSALSPLVIRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRP LGQALNTMRQKLSDDFERLNQFADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQAL VDNIEELEGLSRLTENILFLARAEHQNIAVKKQPVSLNALVENMLDYLSPLAEEKRIC FINQCQGTVWADEILLQRVLSNLLTNAIRYSDENAVIRIESAYDDNVAEIRVANPGSH PADADKLFRRFWRGDNARHTAGFGLGLSLVNAIALLHGGSASYRYADEHNIFSVRLPD SGDS" gene complement(1183625..1184377) /gene="copR" /locus_tag="STM1096" /db_xref="GeneID:1252614" CDS complement(1183625..1184371) /gene="copR" /locus_tag="STM1096" /note="Pathogenicity island encoded protein: SPI5; similar to E. coli putative 2-component transcriptional regulator (AAC75035.1); Blastp hit to AAC75035.1 (239 aa), 74% identity in aa 6 - 236" /codon_start=1 /transl_table=11 /product="Copper resistance transcriptional regulatory protein" /protein_id="NP_460069.3" /db_xref="GI:1109557610" /db_xref="GeneID:1252614" /translation="MTIMSSCWRFTDSLTSLWHTALMKILLIEDNQKTIEWVRQGLTE AGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQVLRALRTAHQSPVICLTAR DSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPAFTRLTINGLDMDATKQS VSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDSETNTVDVAIRRLR AKVDDPFEKKLIMTVRGMGYRLQAETSQNG" regulatory complement(1183646..1183651) /regulatory_class="ribosome_binding_site" /gene="copR" /locus_tag="STM1096" /note="putative RBS for copS; RegulonDB:STMS1H001367" regulatory complement(1184372..1184377) /regulatory_class="ribosome_binding_site" /gene="copR" /locus_tag="STM1096" /note="putative RBS for copR; RegulonDB:STMS1H001368" gene 1184429..1184851 /locus_tag="STM1097" /db_xref="GeneID:1252615" regulatory 1184429..1184434 /regulatory_class="ribosome_binding_site" /locus_tag="STM1097" /note="putative RBS for STM1097; RegulonDB:STMS1H001369" CDS 1184441..1184851 /locus_tag="STM1097" /note="similar to E. coli orf, hypothetical protein (AAC75036.1); Blastp hit to AAC75036.1 (137 aa), 68% identity in aa 2 - 137" /codon_start=1 /transl_table=11 /product="hydroxyisourate hydrolase" /protein_id="NP_460070.1" /db_xref="GI:16764455" /db_xref="GeneID:1252615" /translation="MKRYILATVIASLVAAPAMALAAGNNILSVHILDQQTGKPAPGV EVVLEQKKDNGWTQLNTGHTDQDGRIKALWPEKAAAPGDYRVIFKTGQYFESKKLDTF FPEIPVEFHISKTNEHYHVPLLLSQYGYSTYRGS" gene complement(1185184..1185708) /gene="hpaC" /locus_tag="STM1098" /db_xref="GeneID:1252616" CDS complement(1185184..1185696) /gene="hpaC" /locus_tag="STM1098" /EC_number="1.14.14.9" /note="similar to E. coli orf, hypothetical protein (AAC74092.1); Blastp hit to AAC74092.1 (152 aa), 44% identity in aa 1 - 145" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate 3-monooxygenase, reductase component" /protein_id="NP_460071.1" /db_xref="GI:16764456" /db_xref="GeneID:1252616" /translation="MQVDEQRLRFRDAMASLAAAVNIVTTAGHAGRCGITATAVCSVT DTPPSVMVCINANSAMNPVFQGNGRLCINVLNHEQELMARHFAGMTGMAMEERFHQPC WQNGPLGQPVLNGALAGLEGEISEVQTIGTHLVYLVAIKNIILSQDGHGLIYFKRRFH PVRLEMEAPV" regulatory complement(1185703..1185708) /regulatory_class="ribosome_binding_site" /gene="hpaC" /locus_tag="STM1098" /note="putative RBS for hpaC; RegulonDB:STMS1H001370" gene complement(1185714..1187283) /gene="hpaB" /locus_tag="STM1099" /db_xref="GeneID:1252617" CDS complement(1185714..1187276) /gene="hpaB" /locus_tag="STM1099" /EC_number="1.14.14.9" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate 3-monooxygenase, oxygenase component" /protein_id="NP_460072.1" /db_xref="GI:16764457" /db_xref="GeneID:1252617" /translation="MKPEDFRTDNKRPLTGEEYLKSLQDGREIYIYGERVKDVTTHPA FRNAAASVAQLYDALHKPSMQDTLCWNTDTGSGGYTHKFFRVAKSADDLRQQRDAIAE WSRLSYGWMGRTPDYKAAFGCALGANPAFYGQFEQNARNWYTRIQETGLYFNHAIVNP PIDRHKPADEVKDVYIKLEKETDAGIIVSGAKVVATNSALTHYNMIGFGSAQVMGENP DFALMFVAPMDAEGVKLISRASYEMVAGATGSPFDYPLSSRFDENDAILVMDKVLIPW ENVLIYRDFDRCRRWTMEGGFARMYPLQACVRLAVKLDFITALLKKSLECTGTVEFRG VQADLGEVVAWRNMFWALSDSMCSEATPWVNGAWLPDHAALQTYRVMAPMAYAKIKNI IERNVTSGLIYLPSSARDLNNPQIDQYLAKYVRGSNGMDHVERIKILKLMWDAIGSEF GGRHELYEINYSGSQDEIRLQCLRQAQSSGNMDKMMAMVDRCLSEYDQNGWTVSHLHN NDDINQLDKLLK" regulatory complement(1187278..1187283) /regulatory_class="ribosome_binding_site" /gene="hpaB" /locus_tag="STM1099" /note="putative RBS for hpaB; RegulonDB:STMS1H001371" gene complement(1187494..1187938) /gene="hpaR" /locus_tag="STM1100" /db_xref="GeneID:1252618" CDS complement(1187494..1187934) /gene="hpaR" /locus_tag="STM1100" /codon_start=1 /transl_table=11 /product="homoprotocatechuate degradation operon regulator, HpaR" /protein_id="NP_460073.1" /db_xref="GI:16764458" /db_xref="GeneID:1252618" /translation="MHDSLTIALLQAREAAMTYFRPIVKSHNLTDQQWRIVRILADSP SMDFHELAFRTCILRPSLTGILTRMERDGLVLRLKPVNDQRKLYVMLTEQGQTLYARA RSQVEEAYRKIEADFTPEKTQQLMLLLDDLIALGRQHPDSEAEA" regulatory complement(1187933..1187938) /regulatory_class="ribosome_binding_site" /gene="hpaR" /locus_tag="STM1100" /note="putative RBS for hpaR; RegulonDB:STMS1H001372" gene 1188201..1189498 /gene="hpaG" /locus_tag="STM1101" /db_xref="GeneID:1252619" regulatory 1188201..1188206 /regulatory_class="ribosome_binding_site" /gene="hpaG" /locus_tag="STM1101" /note="putative RBS for hpaG; RegulonDB:STMS1H001373" CDS 1188209..1189498 /gene="hpaG" /locus_tag="STM1101" /EC_number="4.1.1.68" /note="similar to E. coli putative isomerase (AAC74264.1); Blastp hit to AAC74264.1 (219 aa), 38% identity in aa 22 - 219, 29% identity in aa 35 - 211" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate degradation protein" /protein_id="NP_460074.1" /db_xref="GI:16764459" /db_xref="GeneID:1252619" /translation="MKGTVFAVALNHRSQLDAWREAFSQPPYNAPPKTAVWFIKPRNT VIRHGEPIPYPQGEKVLSGATVALIVGKTASRIRPEAAADYIAGYALANEVSLPEESF YRPAIKAKCRDGFCPLGEMAPLSDVDNLTIITEINGREADHWNTADLQRSAAQLLSAL SEFATLNPGDAILLGTPQNRVALRPGDRVRILAKGLPALENPVVAEDEFARHQTFTWP LSATGTLFALGLNYADHASELAFTPPKEPLVFIKAPNTFTEHHQTSVRPNNVEYMHYE AELVVVIGKTARKVSEAEAMEYVAGYTVCNDYAIRDYLENYYRPNLRVKSRDGLTPIG PWIVDKEAVSDPHNLTLRTFVNGELRQEGTTADLIFSIPFLISYLSEFMTLQPGDMIA TGTPKGLSDVVPGDEVVVEVEGVGRLVNRIVSEESAK" gene 1189481..1190961 /gene="hpaE" /locus_tag="STM1102" /db_xref="GeneID:1252620" regulatory 1189481..1189486 /regulatory_class="ribosome_binding_site" /gene="hpaG" /locus_tag="STM1101" /note="putative RBS for hpaE; RegulonDB:STMS1H001374" CDS 1189495..1190961 /gene="hpaE" /locus_tag="STM1102" /EC_number="1.2.1.60" /note="similar to E. coli aldehyde dehydrogenase, prefers NADP over NAD (AAC74382.1); Blastp hit to AAC74382.1 (495 aa), 39% identity in aa 23 - 493" /codon_start=1 /transl_table=11 /product="5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase" /protein_id="NP_460075.1" /db_xref="GI:16764460" /db_xref="GeneID:1252620" /translation="MKKINHWINGKNVAGNDYFQTTNPATGDVLAEVASGGEAEVNQA VAAAKEAFPKWANLPMKERARLMRRLGDLIDQHVPEIAAMETADTGLPIHQTKNVLIP RASHNFEFFAEVCQQMNGKTYPVDDKMLNYTLVQPVGVCALVSPWNVPFMTATWKVAP CLALGNTAVLKMSELSPLTADRLGELALEAGIPAGVLNVVQGYGATAGDALVRHHDVR AVSFTGGTATGRNIMKNAGLKKYSMELGGKSPVLIFEDADIERALDAALFTIFSINGE RCTAGSRIFIQQSIYPEFVKRFAERANRLRVGDPTDPNTQVGALISQQHWEKVSGYIR LGIEEGATLLAGGAEKPTDLPAHLKGGNFLRPTVLADVDNRMRVAQEEIFGPVACLLP FKDEAEGLRLANDVEYGLASYIWTQDVSKVLRLARGIEAGMVFVNTQNVRDLRQPFGG VKASGTGREGGEYSFEVFAEMKNVCISMGDHPIPKWGV" gene 1190958..1191814 /gene="hpaD" /locus_tag="STM1103" /db_xref="GeneID:1252621" regulatory 1190958..1190963 /regulatory_class="ribosome_binding_site" /gene="hpaD" /locus_tag="STM1103" /note="putative RBS for hpaD; RegulonDB:STMS1H001375" CDS 1190963..1191814 /gene="hpaD" /locus_tag="STM1103" /EC_number="1.13.11.15" /codon_start=1 /transl_table=11 /product="3,4-dihydroxyphenylacetate 2,3-dioxygenase" /protein_id="NP_460076.1" /db_xref="GI:16764461" /db_xref="GeneID:1252621" /translation="MGKLALAAKITHVPSMYLSELPGKNHGCRQAAIDGHIEIGKRCR EMGVDTIIVFDTHWLVNSAYHINCADHFQGVYTSNELPHFIRDMTYDYDGNPELGHLI ADEAVKLGVRAKAHNIPSLKLEYGTLVPMRYMNSDKHFKVVSISAFCTVHDFADSRRL GEAILKAIEKYDGTVAVFASGSLSHRFIDDQRAEEGMNSYTREFDHQMDERVVKLWRE GKFKEFCTMLPEYADYCYGEGNMHDTVMLLGMLGWDKYDGKVEFITDLFASSGTGQVN AVFPLPA" gene 1191818..1192204 /gene="hpaF" /locus_tag="STM1104" /db_xref="GeneID:1252622" regulatory 1191818..1191823 /regulatory_class="ribosome_binding_site" /gene="hpaF" /locus_tag="STM1104" /note="putative RBS for hpaF; RegulonDB:STMS1H001376" CDS 1191824..1192204 /gene="hpaF" /locus_tag="STM1104" /EC_number="5.3.3.10" /codon_start=1 /transl_table=11 /product="5-carboxymethyl-2-hydroxymuconate delta-isomerase" /protein_id="NP_460077.1" /db_xref="GI:16764462" /db_xref="GeneID:1252622" /translation="MPHFIAECTENIREQADLPGLFSKVNEALAASGIFPIGGIRSRA HWLDTWQMADGKHDYAFVHMTLKIGAGRSLESRQEVGEMLFGLIKAHFADLMENRYLA LSFEIAELHPTLNYKQNNVHALFK" gene 1192336..1193150 /gene="hpaH" /locus_tag="STM1105" /db_xref="GeneID:1252623" regulatory 1192336..1192341 /regulatory_class="ribosome_binding_site" /gene="hpaH" /locus_tag="STM1105" /note="putative RBS for hpaH; RegulonDB:STMS1H001377" CDS 1192347..1193150 /gene="hpaH" /locus_tag="STM1105" /EC_number="4.2.1.-" /note="similar to E. coli 2-keto-4-pentenoate hydratase (AAC73453.1); Blastp hit to AAC73453.1 (271 aa), 34% identity in aa 6 - 261" /codon_start=1 /transl_table=11 /product="2-oxo-hepta-3-ene-1,7-dioic acid hydratase" /protein_id="NP_460078.1" /db_xref="GI:16764463" /db_xref="GeneID:1252623" /translation="MLDKQTHTLIAQRLNQAEKQREQIRAVSLDYPNITIEDAYAVQR EWVNIKIAEGRTLKGHKIGLTSKAMQASSQISEPDYGALLDDMFFHDGGDIPTDRFIV PRIEVELAFVLAKPLRGPHCTLFDVYNATDYVIPALELIDARSHNIDPETQRPRKVFD TISDNAANAGVILGGRPIKPDELDLRWISALLYRNGVIEETGVAAGVLNHPANGVAWL ANKLAPYDVQLEAGQIILGGSFTRPVPARKGDTFHVDYGNMGAISCRFV" gene 1193154..1193952 /gene="hpaI" /locus_tag="STM1106" /db_xref="GeneID:1252624" regulatory 1193154..1193159 /regulatory_class="ribosome_binding_site" /gene="hpaI" /locus_tag="STM1106" /note="putative RBS for hpaI; RegulonDB:STMS1H001378" CDS 1193161..1193952 /gene="hpaI" /locus_tag="STM1106" /EC_number="4.1.2.-" /note="similar to E. coli orf, hypothetical protein (AAC75305.1); Blastp hit to AAC75305.1 (267 aa), 56% identity in aa 5 - 260" /codon_start=1 /transl_table=11 /product="2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase" /protein_id="NP_460079.1" /db_xref="GI:16764464" /db_xref="GeneID:1252624" /translation="MKNAFKDALKAGRPQIGLWLGLANSYSAELLAGAGFDWLLIDGE HAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGAQTLLIPMVQNADEAR NAVAATRYPPAGIRGVGSALARASRWNRIPEYLHLANDAMCVLVQIETREAMSNLASI LDVDGIDGVFIGPADLSADMGFAGNPQHPEVQAAIENAIVQIRAAGKAPGILMANEAL AKRYLELGALFVAVGVDTTLLARGAEALAARFGVEKKLSGASGVY" gene 1194017..1195400 /gene="hpaX" /locus_tag="STM1107" /db_xref="GeneID:1252625" regulatory 1194017..1194022 /regulatory_class="ribosome_binding_site" /gene="hpaX" /locus_tag="STM1107" /note="putative RBS for hpaX; RegulonDB:STMS1H001379" CDS 1194024..1195400 /gene="hpaX" /locus_tag="STM1107" /note="similar to E. coli putative transport protein (AAC75306.1); Blastp hit to AAC75306.1 (442 aa), 31% identity in aa 22 - 428" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate permease" /protein_id="NP_460080.1" /db_xref="GI:16764465" /db_xref="GeneID:1252625" /translation="MSDTSSALPESPESVSSHNALSTGQQTVINKLFRRLIVFLFVLF IFSFLDRINIGFAGLTMGQDLGLSATMFGLATTLFYATYVIFGIPSNVMLSIVGARHW IATIMVLWGIASTATMFAVGPKSLYVLRMLVGITEAGFLPGILLYLTYWFPAFFRARA NALFMIAMPATTALGSIVSGYILSLDGIFNLHGWQWLFLLEGFPSVLLGIMVWFYLDD TPAKAKWLTAEDKKCLQEMMDSDRLTLVQPEGAISHNAMQQRSLWREVFTPIVLMYTL AYFCLTNTLSAISIWTPQILKSFNEGSSNITIGLLAAIPQICTILGMIYWSRHSDKHQ ERKHHTALPFLFAAAGWLLASATDHNLIQLLGIVMASTGSFSAMAIFWTTPDQSISLR ARAIGIAVINATGNIGSALSPFMIGWLKDITGSFNSGLWFVASLLVVGAAIIWLIPMK ASRPRATP" gene 1195402..1196306 /gene="hpaA" /locus_tag="STM1108" /db_xref="GeneID:1252626" regulatory 1195402..1195407 /regulatory_class="ribosome_binding_site" /gene="hpaA" /locus_tag="STM1108" /note="putative RBS for hpaA; RegulonDB:STMS1H001380" CDS 1195410..1196306 /gene="hpaA" /locus_tag="STM1108" /note="similar to E. coli putative ARAC-type regulatory protein (AAC74766.1); Blastp hit to AAC74766.1 (303 aa), 25% identity in aa 181 - 281" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate catabolism regulatory protein HpaA" /protein_id="NP_460081.1" /db_xref="GI:16764466" /db_xref="GeneID:1252626" /translation="MCQRAIANIDISKEYDESMGSNDVHYQSFARMADFFGRDMQAHR HDQFFQMHFLDTGQIELQLDDHRYSVQAPLFVLTPPSVPHAFITESDSDGHVLTVREE LVWPLLEVLYPGTREAFGLPGICLSLADKPNELAALKHYWQLIERESTEQLAGCEHTL VLLAQAVFTLLLRNAKLDDHAATGMRGELKLFQRFTLLIDNHFHQHWTVPDYACELHI TESRLTDICRRFANRPPKRLIFDRQLREAKRLLLFSDNAVNEIAWQLGFKDPAYFARF FNRLAGCSPSQFRQREVPSFLN" gene 1196316..1197258 /locus_tag="STM1109" /db_xref="GeneID:1252627" regulatory 1196316..1196321 /regulatory_class="ribosome_binding_site" /locus_tag="STM1109" /note="putative RBS for STM1109; RegulonDB:STMS1H001381" CDS 1196320..1197258 /locus_tag="STM1109" /note="similar to E. coli orf, hypothetical protein (AAC75328.1); Blastp hit to AAC75328.1 (311 aa), 27% identity in aa 7 - 147, 27% identity in aa 155 - 277" /codon_start=1 /transl_table=11 /product="MBL fold metallo-hydrolase" /protein_id="NP_460082.1" /db_xref="GI:16764467" /db_xref="GeneID:1252627" /translation="MMKKSVAMLAVCMLAQSHLAIAAGTPAPQEINIVLLGTKGGPSL LNTARLPQATALTIGDKIWLIDAGYGASLQLVKNGIPLRNINTILLTHLHSDHILDYP SLLMNAWASGLKDHTIQVYGPPGTQAMTKASWKVFDRDITLRMEEEGKPDPRNLVKAT DIGQGVIYKDELVTISALKVPHSPFPDGEAFAYRFDTQGKRIVFSGDTSWFPPLATFA QGADILVHEAVHVPSVAKLANSIGNGKTLAEAIASHHTTIEDVGKIARESHVKKLVLS HLVPATVADDVWQQEAMKNYPGPVIVGHDNMTISVP" gene complement(1197666..1198040) /locus_tag="STM1110" /db_xref="GeneID:1252628" CDS complement(1197666..1198028) /locus_tag="STM1110" /note="RssC (gi|12004175)" /codon_start=1 /transl_table=11 /product="anti-adapter protein IraM" /protein_id="NP_460083.1" /db_xref="GI:16764468" /db_xref="GeneID:1252628" /translation="MEWKVVDTVISPSTGVSFSCIHSLKNLRLTLWYQADVYMPPGSI IIPFNKGVLINDKLYPVTVYNVTRFNPVLWKSLKENSHCPGNCNPKSEACSYPFECLV SVCPFGLTRNIQIDNKKV" regulatory complement(1198035..1198040) /regulatory_class="ribosome_binding_site" /locus_tag="STM1110" /note="putative RBS for STM1110; RegulonDB:STMS1H001382" gene complement(1198682..1199002) /gene="yccD" /locus_tag="STM1111" /db_xref="GeneID:1252629" CDS complement(1198682..1198987) /gene="yccD" /locus_tag="STM1111" /note="similar to E. coli orf, hypothetical protein (AAC74084.1); Blastp hit to AAC74084.1 (101 aa), 74% identity in aa 1 - 101" /codon_start=1 /transl_table=11 /product="chaperone-modulator protein CbpM" /protein_id="NP_460084.1" /db_xref="GI:16764469" /db_xref="GeneID:1252629" /translation="MANITVTFTITEFCLHTGVTEEELNEIVGLGVIEPYEDDNADWQ FDDRAASVVQRALRLREELALDWPGIAVALTLLEENSRLREENRLLLQRLSRFISHP" gene complement(1198987..1199999) /gene="cbpA" /locus_tag="STM1112" /db_xref="GeneID:1252630" CDS complement(1198987..1199907) /gene="cbpA" /locus_tag="STM1112" /note="curved DNA-binding protein. (SW:CBPA_SALTY)" /codon_start=1 /transl_table=11 /product="DNA-binding protein" /protein_id="NP_460085.1" /db_xref="GI:16764470" /db_xref="GeneID:1252630" /translation="MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEA RFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQHEGQPYNAEDFDDIFSSIF GQHGRHSHHRHAARGHDIEIEVAVFLEETLEEHQRTISYSVPVYNAFGLVEREIPKTL NVKIPAGVSNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVNQDLEVVLPLA PWEAALGAKVSVPTLKERILLTIPPGSQAGQRLRIKGKGLASKKHTGDLYAIIKIVMP PKPDEKTAALWQQLADAQSSFDPRQQWGKA" regulatory complement(1198997..1199002) /regulatory_class="ribosome_binding_site" /gene="yccD" /locus_tag="STM1111" /note="putative RBS for yccD; RegulonDB:STMS1H001383" regulatory complement(1199913..1199918) /regulatory_class="ribosome_binding_site" /gene="cbpA" /locus_tag="STM1112" /note="putative RBS for cbpA; RegulonDB:STMS1H001384" regulatory complement(1199972..1199980) /regulatory_class="minus_10_signal" /gene="cbpA" /locus_tag="STM1112" /note="putative -10_signal for cbpA; RegulonDB:STMLTH004469" regulatory complement(1199991..1199999) /regulatory_class="minus_35_signal" /gene="cbpA" /locus_tag="STM1112" /note="putative -35_signal for cbpA; RegulonDB:STMLTH004469" gene 1200137..1200504 /gene="scsA" /locus_tag="STM1113" /db_xref="GeneID:1252631" regulatory 1200137..1200142 /regulatory_class="ribosome_binding_site" /gene="scsA" /locus_tag="STM1113" /note="putative RBS for scsA; RegulonDB:STMS1H001385" CDS 1200142..1200504 /gene="scsA" /locus_tag="STM1113" /note="suppressor for copper-sensitivity A (gi|2327003)" /codon_start=1 /transl_table=11 /product="copper resistance protein" /protein_id="NP_460086.1" /db_xref="GI:16764471" /db_xref="GeneID:1252631" /translation="MAKQQRMGWWFLCLACVVVMVCTAQRMAGLHALQMQATASAAVV SAPSSTDDGSPVTPCELSAKSLLAAPPVLFEGAILALCLLLSLLAPVRVMRLPFSPPR AISPPTLRVHLRFCVFRE" gene 1200547..1202439 /gene="scsB" /locus_tag="STM1114" /db_xref="GeneID:1252632" regulatory 1200547..1200552 /regulatory_class="ribosome_binding_site" /gene="scsB" /locus_tag="STM1114" /note="putative RBS for scsB; RegulonDB:STMS1H001386" CDS 1200553..1202439 /gene="scsB" /locus_tag="STM1114" /note="suppressor for copper-sensitivity B (gi|2327004)" /codon_start=1 /transl_table=11 /product="protein-disulfide reductase" /protein_id="NP_460087.1" /db_xref="GI:16764472" /db_xref="GeneID:1252632" /translation="MMILFRRILFCLLWLWLPVSWAAESGWLRSPDNDHASIRLRADT SANGETRLLLDVKLENGWKTYWRAPGEGGVAPSIAWKGDMPEVSWFWPTPSRFDVANI TTQGYHDEVTFPMIVRGTLPATLRGVLTLSTCSNVCLLTDYPFSVTPTVQNADFAHDY ARAMGKIPLRSGLTDSLDVGYRPGELVVTATRAAGWSSPGLYLDTVDDVDFAKPRLRV EGDRLQATVPVTDSWGEKAPDLRNKSLTLVLADGAIAQESTQTIGTAPAQTPDNAALP FWQVVMMALIGGLILNLMPCVLPVLGMKLGSILLVEEKSRSHIRRQFLASVAGIIASF MALAAFMTLLRLSNHALAWGVQFQNVWFIGFMALVMLLFSASLFGLFEFRLPSSMTTK LATYGGNGMSGHFWQGAFATLLATPCSAPFLGTAVAVALTASLPTLWGLFLALGLGMS APWLLVAIRPGLALRLPRPGRWMNVLRRILGLMMLGSAIWLATLLLPHFGFTASKSAQ DTVQWQPLSEQAIQSALAQHKRVFVDVTADWCITCKVNKYNVLQKEDVQAALQQPDVV ALRGDWTLPSDAITDFLKTRGQVAVPFNQVYGPGLPEGEALPTLLTRDAVLQTLKKAK GITQ" gene 1202429..1203059 /gene="scsC" /locus_tag="STM1115" /db_xref="GeneID:1252633" regulatory 1202429..1202434 /regulatory_class="ribosome_binding_site" /gene="scsC" /locus_tag="STM1115" /note="putative RBS for scsC; RegulonDB:STMS1H001387" CDS 1202436..1203059 /gene="scsC" /locus_tag="STM1115" /note="suppressor for copper-sensitivity C (gi|2327005)" /codon_start=1 /transl_table=11 /product="disulfide bond formation protein DsbA" /protein_id="NP_460088.1" /db_xref="GI:16764473" /db_xref="GeneID:1252633" /translation="MKYMIVLLLALFSTLSIAQETAPFTPDQEKQIENLIHAALFNDP ASPRIGAKHPKLTLVNFTDYNCPYCKQLDPMLEKIVQKYPDVAVIIKPLPFKGESSVL AARIALTTWREHPQQFLALHEKLMQKRVYHTDDSIKQAQQKAGATPVTLDEKSMETIR TNLQLARLVGVQGTPATIIGDELIPGAVPWDTLEAVVKEKLASANGG" gene 1203044..1203555 /gene="scsD" /locus_tag="STM1116" /db_xref="GeneID:1252634" regulatory 1203044..1203049 /regulatory_class="ribosome_binding_site" /gene="scsD" /locus_tag="STM1116" /note="putative RBS for scsD; RegulonDB:STMS1H001388" CDS 1203049..1203555 /gene="scsD" /locus_tag="STM1116" /note="suppressor for copper-sensitivity D (gi|2327006)" /codon_start=1 /transl_table=11 /product="protein disulfide oxidoreductase" /protein_id="NP_460089.1" /db_xref="GI:16764474" /db_xref="GeneID:1252634" /translation="MAGKLRRWLREAAVFLALLIAIMVVMDVWRAPQAPPAFATTPLR TLTGESTTLATLSEERPVLLYFWASWCGVCRFTTPAVARLAAEGENVMTVALRSGDDA EVARWLARKGVDFPVVNDANGALSAGWEISVTPTLVVVSQGRVVFTTSGWTSYWGMKL RLWWAKTF" gene 1203676..1204929 /gene="agp" /locus_tag="STM1117" /db_xref="GeneID:1252635" regulatory 1203676..1203681 /regulatory_class="ribosome_binding_site" /gene="agp" /locus_tag="STM1117" /note="putative RBS for agp; RegulonDB:STMS1H001389" CDS 1203688..1204929 /gene="agp" /locus_tag="STM1117" /EC_number="3.1.3.10" /note="glucose-1-phosphatase precursor. (SW:AGP_SALTY)" /codon_start=1 /transl_table=11 /product="bifunctional glucose-1-phosphatase/inositol phosphatase" /protein_id="NP_460090.1" /db_xref="GI:16764475" /db_xref="GeneID:1252635" /translation="MKKSLLAVAVAGAVLLSSAVQAQTTPEGYQLQQVLMMSRHNLRA PLANNGSVLAQSTPNAWPAWDVPGGQLTTKGGVLEVYMGHYTREWLVAQGLIPSGECP APDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAF RQQAVQAMEKARSQLHLDESYKLLEQITHYQDSPSCKEKHQCSLIDAKDTFSANYQQE PGVQGPLKVGNSLVDAFTLQYYEGFPMDQVAWGGIHTDRQWKVLSKLKNGYQDSLFTS PTVARNVAAPLVKYIDKVLVADRVSAPKVTVLVGHDSNIASLLTALDFKPYQLHDQYE RTPIGGQLVFQRWHDGNANRDLMKIEYVYQSARQLRNAEALTLKSPAQRVTLELKGCP VDANGFCPLDKFDNVMNTAAK" gene complement(1204963..1205203) /gene="yccJ" /locus_tag="STM1118" /db_xref="GeneID:1252636" CDS complement(1204963..1205190) /gene="yccJ" /locus_tag="STM1118" /note="similar to E. coli orf, hypothetical protein (AAC74088.1); Blastp hit to AAC74088.1 (75 aa), 92% identity in aa 1 - 75" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460091.1" /db_xref="GI:16764476" /db_xref="GeneID:1252636" /translation="MPTQEAKAHRVGEWASLRNTSPEIAEAIFEVAHYDEKLAEKIWE EGSDEVLIKAFEKTDKDSLFWGEQIIERKNV" regulatory complement(1205198..1205203) /regulatory_class="ribosome_binding_site" /gene="yccJ" /locus_tag="STM1118" /note="putative RBS for yccJ; RegulonDB:STMS1H001390" gene complement(1205211..1205821) /gene="wraB" /locus_tag="STM1119" /db_xref="GeneID:1252637" CDS complement(1205211..1205807) /gene="wraB" /locus_tag="STM1119" /note="similar to E. coli trp repressor binding protein; affects association of trp repressor and operator (AAC74089.1); Blastp hit to AAC74089.1 (198 aa), 94% identity in aa 1 - 198" /codon_start=1 /transl_table=11 /product="NAD(P)H:quinone oxidoreductase, type IV" /protein_id="NP_460092.1" /db_xref="GI:16764477" /db_xref="GeneID:1252637" /translation="MAKILVLYYSMYGHIETMAHAVAEGAKKVDGAEVIIKRVPETMP PEIFAKAGGKTQNAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGS LYGKLGSVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPY GATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG" regulatory complement(1205816..1205821) /regulatory_class="ribosome_binding_site" /gene="wraB" /locus_tag="STM1119" /note="putative RBS for wraB; RegulonDB:STMS1H001391" gene 1206155..1206262 /gene="ycdF" /locus_tag="STM1120" /note="pseudogene; in-frame stops following codons 5 and 21" /pseudo /db_xref="GeneID:1252638" gene 1206186..1206359 /gene="ymdF" /locus_tag="STM1121" /db_xref="GeneID:1252639" regulatory 1206186..1206191 /regulatory_class="ribosome_binding_site" /gene="ycdF" /locus_tag="STM1120" /note="putative RBS for ymdF; RegulonDB:STMS1H001393" /pseudo CDS 1206192..1206359 /gene="ymdF" /locus_tag="STM1121" /note="similar to E. coli orf, hypothetical protein (AAC74341.1); Blastp hit to AAC74341.1 (78 aa), 87% identity in aa 20 - 73" /codon_start=1 /transl_table=11 /product="stress-induced protein" /protein_id="NP_460093.1" /db_xref="GI:16764478" /db_xref="GeneID:1252639" /translation="MANHRGGSGNFAEDRERASEAGRKGGQHSGGNFKNDPQRASEAG KKGGKSSNRNS" gene 1206483..1207134 /gene="ycdC" /locus_tag="STM1122" /db_xref="GeneID:1252640" regulatory 1206483..1206488 /regulatory_class="ribosome_binding_site" /gene="ycdC" /locus_tag="STM1122" /note="putative RBS for ycdC; RegulonDB:STMS1H001394" CDS 1206496..1207134 /gene="ycdC" /locus_tag="STM1122" /note="similar to E. coli putative tet operon regulator (AAC74098.1); Blastp hit to AAC74098.1 (212 aa), 83% identity in aa 1 - 212" /codon_start=1 /transl_table=11 /product="pyrimidine utilization regulatory protein R" /protein_id="NP_460094.1" /db_xref="GI:16764479" /db_xref="GeneID:1252640" /translation="MSQRTEKKIGKRSQATGAKRQLILTAALAVFSQYGIHGARLEQV AERAGVSKTNLLYYYPSKEALYVAVMRQILDVWLAPLKAFRAEFSPLEAIKEYIRLKL EVSRDYPQASRLFCMEMLAGAPLLMEELTGDLKALIDEKSALIAGWVHSGKLAPISPH HLIFMIWAATQHYADFAPQVEAVTGATLRDEAFFNQTVESVQRIIIEGIRVR" gene complement(1207131..1207533) /locus_tag="STM1123" /db_xref="GeneID:1252641" CDS complement(1207131..1207526) /locus_tag="STM1123" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460095.1" /db_xref="GI:16764480" /db_xref="GeneID:1252641" /translation="MKRIFLTCAALLISSQALADECASASTQLEMNRCAAAQYQAADK KLNETYQSALKRAQPPQRELLQKAQVAWIALRDADCALIRSGTEGGSVQPMIASQCLT DKTNEREAFLASLLQCEEGDLSCPLPPAG" regulatory complement(1207528..1207533) /regulatory_class="ribosome_binding_site" /locus_tag="STM1123" /note="putative RBS for STM1123; RegulonDB:STMS1H001395" gene complement(1207585..1211547) /gene="putA" /locus_tag="STM1124" /db_xref="GeneID:2673752" CDS complement(1207585..1211547) /gene="putA" /locus_tag="STM1124" /EC_number="1.2.1.88" /EC_number="1.5.5.2" /note="PUTA protein (SW:PUTA_SALTY); bifunctional in plasma membrane proline dehydrogenase and pyrroline-5-carboxylate dehydrogenase OR in cytoplasm a transcriptional repressor" /codon_start=1 /transl_table=11 /product="trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase" /protein_id="NP_447555.1" /db_xref="GI:1109557611" /db_xref="GeneID:2673752" /translation="MGTTTMGVKLDDATRERIKMAASRIDRTPHWLIKQAIFSYLDKL ENSDTLPELPALFVGAANESEEPVAPQDEPHQPFLEFAEQILPQSVSRAAITAAWRRP ETDAVSMLMEQARLSPPVAEQAHKLAYQLAEKLRNQKSASGRAGMVQGLLQEFSLSSQ EGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGR LVSTHNEANLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAQALANARKLE EKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALH PRYSRAQYDRVMEELYPRLKSLTLLARQYDIGLNIDAEEADRLEISLDLLEKLCFEPE LAGWNGIGFVIQAYQKRCPLVIDYLVDLASRSRRRLMIRLVKGAYWDSEIKRAQMEGL EGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYHLAGQNYYPGQY EFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSF VNRIADATLPLDELVADPVEAVEKLAQQEGQAGIPHPKIPLPRDLYGEGRINSAGLDL ANEHRLASLSSALLSNAMQKWQAKPVLEQPVADGEMTPVINPAEPKDIVGWGREATES EVEQALQNAVNQAPVWFATPPQERAAILQRAAVLMEDQMQQLIGLLVREAGKTFSNAI AEVREAVDFLHYYAGQVRDDFDNETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNS VLAKPAEQTSLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTADARVRGVMFTGS TEVATLLQRNIATRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAG QRCSALRVLCLQDDIAEHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHI QTMRAKGRPVFQAARENSDDAQEWQTGTFVMPTLIELENFAELEKEVFGPVLHVVRYN RNQLAELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPF GGEGLSGTGPKAGGPLYLYRLLAHRPPNALNTTLTRQDARYPVDAQLKTTLLAPLTAL TQWAADRPALQTLCRQFADLAQAGTQRLLPGPTGERNTWTLLPRERVLCLADDEQDAL TQLAAVLAVGSQALWSDDAFHRDLAKRLPAAVAARVQFAKAETLMAQPFDAVIFHGDS DKLRTVCEAVAAREGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG " regulatory complement(1211556..1211561) /regulatory_class="ribosome_binding_site" /note="putative RBS for putA; RegulonDB:STMS1H001396" regulatory complement(1211660..1211668) /regulatory_class="minus_10_signal" /note="putative -10_signal for putA; RegulonDB:STMLTH004470" regulatory complement(1211676..1211684) /regulatory_class="minus_35_signal" /note="putative -35_signal for putA; RegulonDB:STMLTH004470" gene 1211904..1213477 /gene="putP" /locus_tag="STM1125" /db_xref="GeneID:1252643" regulatory 1211904..1211912 /regulatory_class="minus_35_signal" /gene="putP" /locus_tag="STM1125" /note="putative -35_signal for putP; RegulonDB:STMLTH004471" regulatory 1211931..1211939 /regulatory_class="minus_10_signal" /gene="putP" /locus_tag="STM1125" /note="putative -10_signal for putP; RegulonDB:STMLTH004471" regulatory 1211956..1211961 /regulatory_class="ribosome_binding_site" /gene="putP" /locus_tag="STM1125" /note="putative RBS for putP; RegulonDB:STMS1H001397" CDS 1211969..1213477 /gene="putP" /locus_tag="STM1125" /note="sodium/proline symporter (proline permease). (SW:PUTP_SALTY)" /codon_start=1 /transl_table=11 /product="sodium/proline symporter" /protein_id="NP_460097.1" /db_xref="GI:16764482" /db_xref="GeneID:1252643" /translation="MAISTPMLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGP FVTALSAGASDMSGWLLMGLPGAIFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTE FNNNALTLPDYFTGRFEDKSRVLRIISALVILLFFTIYCASGIVAGARLFESTFGMSY ETALWAGAAATIIYTFIGGFLAVSWTDTVQASLMIFALILTPVMVIVGVGGFSESLEV IKQKSIENVDMLKGLNFVAIISLMGWGLGYFGQPHILARFMAADSHHSIVHARRISMT WMILCLAGAVAVGFFGIAYFNNNPALAGAVNQNSERVFIELAQILFNPWIAGVLLSAI LAAVMSTLSCQLLVCSSAITEDLYKAFLRKSASQQELVWVGRVMVLVVALIAIALAAN PDNRVLGLVSYAWAGFGAAFGPVVLFSVMWSRMTRNGALAGMIIGAVTVIVWKQYGWL DLYEIIPGFIFGSLGIVIFSLLGKAPTAAMQERFAKADAHYHSAPPSKLQAE" gene 1214284..1215158 /gene="phoH" /locus_tag="STM1126" /db_xref="GeneID:2673763" regulatory 1214284..1214289 /regulatory_class="ribosome_binding_site" /gene="phoH" /locus_tag="STM1126" /note="putative RBS for phoH; RegulonDB:STMS1H001398" CDS 1214304..1215158 /gene="phoH" /locus_tag="STM1126" /note="similar to E. coli PhoB-dependent, ATP-binding pho regulon component; may be helicase; induced by P starvation (AAC74105.1); Blastp hit to AAC74105.1 (354 aa), 92% identity in aa 71 - 354" /codon_start=1 /transl_table=11 /product="phosphate starvation protein PhoH" /protein_id="NP_447557.1" /db_xref="GI:1109557612" /db_xref="GeneID:2673763" /translation="MCAHNRVQENAGDVYLQLKVLSMGRQKAVIKARREAKRVLRRDS RSHKQREEESVTSLVQMGGVEAIGMARDSRDTSPVKARNEAQAHYLNAIDSKQLIFAT GEAGCGKTWISAAKAAEALIHKDVERIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPV YDVLLKRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMF LTRLGENVTVIVNGDITQCDLPRGVRSGLSDALERFEEDEMVGIVHFNKDDCVRSALC QRTLHAYS" gene complement(1215264..1216153) /locus_tag="STM1127" /db_xref="GeneID:1252645" CDS complement(1215264..1216145) /locus_tag="STM1127" /note="similar to E. coli orf, hypothetical protein (AAC75480.1); Blastp hit to AAC75480.1 (285 aa), 29% identity in aa 15 - 264" /codon_start=1 /transl_table=11 /product="N-acetylmannosamine kinase" /protein_id="NP_460099.1" /db_xref="GI:16764484" /db_xref="GeneID:1252645" /translation="MEPQPPRLKPGKILDTLGAMQKSLTRASQRIAQYILAFPRQVTQ SSIADLSRETQAGEATVIRFCRTLGYKGFQDFKMDLAIELATTESDDSSPLLDAEVSE SDDAHAIGLKLQNTISNVLSETLNLLDMQQVLGVVDALRHCHSVYIFGVGSSGITALD MKHKLMRIGLRGDAVSNNHFMYMQATLLKAGDVAMGVSHSGTSPETVHSLRLARQAGA TTVAITHNLGSPLCEEADFCLINGNRQGMLQGDSIGTKAAQLFVFDLLYTLLVQSSPE QARESKLRTMNALDMTK" regulatory complement(1216148..1216153) /regulatory_class="ribosome_binding_site" /locus_tag="STM1127" /note="putative RBS for STM1127; RegulonDB:STMS1H001399" gene complement(1216430..1217938) /locus_tag="STM1128" /db_xref="GeneID:1252646" CDS complement(1216430..1217926) /locus_tag="STM1128" /note="similar to E. coli putative cotransporter (AAC76702.1); Blastp hit to AAC76702.1 (571 aa), 22% identity in aa 7 - 478" /codon_start=1 /transl_table=11 /product="acetylneuraminate ABC transporter" /protein_id="NP_460100.1" /db_xref="GI:16764485" /db_xref="GeneID:1252646" /translation="MITHSFGIVNYLVLFGYLLAMMLVGVYFSRRQKTADDYFRGGGR VPGWAAGVSVFATTLSSITFMSIPAKAFTSDWTFIIGQYLAIAILPLVFYFYIPFFRK LKVTSAYEYLEARFDVRCRLFASMSFMLFHIGRIAIITFLTVLALRPFIAIDPVILVL LISVMCIIYTWMGGIEGVIWTDVIQGLLLSGSAILIFIVICLKVQGGIDEIFTVTQQA DKFFPATQFHWSWTESTVPVLMIGFLFANIQQFTASQDVVQRYIVTDSIEETKKTLLT NAKLVAVIPVFFFAIGSALFVYYQQHPQLLPAGFNTGGILPLFVVTEMPVGIAGLIIA AIFAAAQSSISSSLNSISSCFNSDIYQRLSHKKRTPENRMKIAKLVILVAGLISSAAS VWLVMADESEIWDAFNSLIGLMGGPMTGLFMLGIFFKRANAGSAVLGIIISVITVLGA RYATDLNFFFYGVIGSLSVVISGVIFAPLFAPAPPLTLDEKPEPKVTL" regulatory complement(1217933..1217938) /regulatory_class="ribosome_binding_site" /locus_tag="STM1128" /note="putative RBS for STM1128; RegulonDB:STMS1H001400" gene complement(1218263..1218949) /locus_tag="STM1129" /db_xref="GeneID:1252647" CDS complement(1218263..1218943) /locus_tag="STM1129" /note="similar to E. coli putative enzyme (AAC76255.1); Blastp hit to AAC76255.1 (229 aa), 70% identity in aa 1 - 226" /codon_start=1 /transl_table=11 /product="N-acetylmannosamine-6-phosphate 2-epimerase" /protein_id="NP_460101.1" /db_xref="GI:16764486" /db_xref="GeneID:1252647" /translation="MSLLARLEQSVHENGGLIVSCQPVPGSPMDKPEIVAAMAQAAAS AGAVAVRIEGIENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADII AFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQKGIEFIGTTLSGYTGP ITPVEPDLAMVTQLSHAGCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITRIEHICQ WFSHAVKR" regulatory complement(1218944..1218949) /regulatory_class="ribosome_binding_site" /locus_tag="STM1129" /note="putative RBS for STM1129; RegulonDB:STMS1H001401" gene 1219449..1220609 /locus_tag="STM1130" /db_xref="GeneID:1252648" CDS 1219449..1220609 /locus_tag="STM1130" /note="similar to E. coli orf, hypothetical protein (AAC77266.1); Blastp hit to AAC77266.1 (404 aa), 41% identity in aa 40 - 403" /codon_start=1 /transl_table=11 /product="N-acetylneuraminic acid mutarotase" /protein_id="NP_460102.1" /db_xref="GI:16764487" /db_xref="GeneID:1252648" /translation="MGMQMKNFKKMMTLMALCFSVAITTSGYATTLPDIPEPLKNGTG AIDNNGVIYVGLGTAGTSWYKIDLKKQHKDWERIKSFPGGAREQSVSVFLNDELYVFG GVGKKNSESPLQVYSDVYKYSPVKNTWQKVDTISPVGLTGHTGVKLNETMVLITGGVN EHIFDKYFIDIAAAAADESEKNKVIYNYFNKPAKDYFFNKIVFIYNAKENTWKNAGEL PGAGTAGSSSVMGNNFLMLINGELKPGLRTDVIYRAMWDNDKLTWLKNSQLPPSPGEQ QQEGLAGAFSGYSHGVLLVGGGANFPGAKQNYTNGKFYSHEGINKKWRDEVYGLINGH WQYMGKMKQPLGYGVSVSYGDEVFLIGGENAKGKPVSSVTSFTMRDGNLLIK" gene 1220643..1221347 /locus_tag="STM1131" /db_xref="GeneID:1252649" regulatory 1220643..1220648 /regulatory_class="ribosome_binding_site" /locus_tag="STM1131" /note="putative RBS for STM1131; RegulonDB:STMS1H001402" CDS 1220655..1221347 /locus_tag="STM1131" /note="similar to E. coli orf, hypothetical protein (AAC77267.1); Blastp hit to AAC77267.1 (241 aa), 26% identity in aa 4 - 239" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460103.1" /db_xref="GI:16764488" /db_xref="GeneID:1252649" /translation="MKINKYLLGMVSFIAFSSYLQAATLDYRHEYADRTRINKDRIAI IEKLPNGIGFYVDASVKSGGVDGEQDKHLSDLVANAIELGVSYNYKVTDNFVLQPGFI FESGPDTSIYKPYLRGQYNFDSGVYMAGRYRYDYARKTANYSDDEKTNRFDTYIGYVF DELKLEYNFTWMDSDQIKFDNKKTNYEHNVALAWKLNKSFTPYVEVGNVAVRNNTDER QTRYRVGLQYHF" gene 1221618..1222910 /locus_tag="STM1132" /db_xref="GeneID:1252650" regulatory 1221618..1221623 /regulatory_class="ribosome_binding_site" /locus_tag="STM1132" /note="putative RBS for STM1132; RegulonDB:STMS1H001403" CDS 1221630..1222910 /locus_tag="STM1132" /note="similar to E. coli putative transport protein (AAC77235.1); Blastp hit to AAC77235.1 (425 aa), 57% identity in aa 25 - 418" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_460104.1" /db_xref="GI:16764489" /db_xref="GeneID:1252650" /translation="MIAKFFPWYSEITRPQKNALFSAWLGYVFDGFDFMLIFYIMYLI KADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGL ASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAY FMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGPGKHSQSAWSVFS LSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLTGEGFDTGVVSNLMTAAA FGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMAT NVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTF IVAFWTATILLIIGLSIPDRLKARRESFQSTKEF" gene 1222913..1224027 /locus_tag="STM1133" /db_xref="GeneID:1252651" regulatory 1222913..1222918 /regulatory_class="ribosome_binding_site" /locus_tag="STM1133" /note="putative RBS for STM1133; RegulonDB:STMS1H001404" CDS 1222921..1224027 /locus_tag="STM1133" /note="similar to E. coli putative dehydrogenase (AAC77236.1); Blastp hit to AAC77236.1 (377 aa), 62% identity in aa 6 - 371" /codon_start=1 /transl_table=11 /product="putative dehydrogenases and related proteins" /protein_id="NP_460105.1" /db_xref="GI:16764490" /db_xref="GeneID:1252651" /translation="MMTKYGVVGTGYFGAELARFMSKVEGAKITAIYDPVNAAPIAKE LNCVATATMEALCSHPDVDCVIIASPNYLHKAPVIAAAKAGKHVFCEKPIALNYQDCK DMVDACKEAGVTFMAGHVMNFFHGVRHAKALIKAGEIGEVTQVHTKRNGFEDVQDEIS WKKIRAKSGGHLYHHIHELDCTLFIMDETPSLVSMAAGNVAHKGEKFGDEDDVVLITL EFESGRFATLQWGSSFHYPEHYVLIEGTTGAILIDMQNTAGYLIKAGKKTHFLVHESQ AEDDDRRNGNISSEMDGAIAYGKPGKRTPMWLSSIMKLEMQYLHDVINGLEPGEEFAK LLTGEAATNAIATADAATLSSNEGRKVKLTEILG" gene complement(1224732..1224816) /gene="serX" /locus_tag="STM1134" /db_xref="GeneID:1252652" tRNA complement(1224732..1224816) /gene="serX" /locus_tag="STM1134" /product="tRNA-Ser" /db_xref="GeneID:1252652" gene 1225044..1225993 /gene="ycdW" /locus_tag="STM1135" /db_xref="GeneID:1252653" regulatory 1225044..1225049 /regulatory_class="ribosome_binding_site" /gene="ycdW" /locus_tag="STM1135" /note="putative RBS for ycdW; RegulonDB:STMS1H001406" CDS 1225055..1225993 /gene="ycdW" /locus_tag="STM1135" /note="similar to E. coli putative dehydrogenase (AAC74117.1); Blastp hit to AAC74117.1 (325 aa), 77% identity in aa 14 - 325" /codon_start=1 /transl_table=11 /product="bifunctional glyoxylate/hydroxypyruvate reductase A" /protein_id="NP_460106.1" /db_xref="GI:16764491" /db_xref="GeneID:1252653" /translation="MEIIFYHPTFNAAWWVNALEKALPHARVREWKVGDNNPADYALV WQPPVEMLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEY AVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGF PLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPD GAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHI AAVTRPAEAIDYISRTITQLEKGEPVTGQVDRARGY" gene 1226065..1226814 /gene="ycdX" /locus_tag="STM1136" /db_xref="GeneID:1252654" regulatory 1226065..1226070 /regulatory_class="ribosome_binding_site" /gene="ycdX" /locus_tag="STM1136" /note="putative RBS for ycdX; RegulonDB:STMS1H001407" CDS 1226077..1226814 /gene="ycdX" /locus_tag="STM1136" /note="related to hydrolases of the PHP family; similar to E. coli orf, hypothetical protein (AAC74118.1); Blastp hit to AAC74118.1 (245 aa), 89% identity in aa 1 - 245" /codon_start=1 /transl_table=11 /product="phosphatase" /protein_id="NP_460107.1" /db_xref="GI:16764492" /db_xref="GeneID:1252654" /translation="MYPVDLHMHTVASTHAYSTLSDYIAEAKRKGIKLFAITDHGPDM EDAPHHWHFINMRIWPRLVDGVGILRGIEANIKNINGEIDCSGKMFDSLDLIIAGFHE PVFAPHDKETNTQAMIATIASGKVHIISHPGNPKYPVEVKAIAQAAAKHHVALEINNS SFLHSRKGSEDNCRAVAAAVRDAGGWVALGSDSHTAFTLGDFTECRKILDAVNFPEDR ILNVSPQRLLAFLESRGMAPVPEFAEL" gene 1226824..1227392 /gene="ycdY" /locus_tag="STM1137" /db_xref="GeneID:1252655" regulatory 1226824..1226829 /regulatory_class="ribosome_binding_site" /gene="ycdY" /locus_tag="STM1137" /note="putative RBS for ycdY; RegulonDB:STMS1H001408" CDS 1226838..1227392 /gene="ycdY" /locus_tag="STM1137" /note="similar to E. coli putative oxidoreductase component (AAC74119.1); Blastp hit to AAC74119.1 (184 aa), 86% identity in aa 1 - 184" /codon_start=1 /transl_table=11 /product="molecular chaperone" /protein_id="NP_460108.1" /db_xref="GI:16764493" /db_xref="GeneID:1252655" /translation="MNEFSILCRVLGSLFYRQPQDPLLVPLFTLIREGKLAANWPLEQ DDMLARLQKSCDITQISTDYNALFVGEECAVAPYRSAWVEGAEESEVRAFLTSRGMPL ADTPADHIGTLLLAASWLEDQSAEDESEALETLFADYLLPWCNTFLGKVEAHAVTPFW RTLAPLTRDAIGAMWDELQEEDEE" gene 1227445..1227975 /gene="ycdZ" /locus_tag="STM1138" /db_xref="GeneID:1252656" CDS 1227445..1227975 /gene="ycdZ" /locus_tag="STM1138" /note="hypothetical protein in phoH-csgG intergenic region. (SW:YCDZ_SALTY)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460109.1" /db_xref="GI:16764494" /db_xref="GeneID:1252656" /translation="MCVISLMCRFSVMMRAMNILLSIAITTGILSGIWGWGAVSLGLL SWAGFLGCTAYFACPQGGFKGLLISACTLLSGMVWALVIIHGSALAPHLEIVSYVLTG IVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGDWRLVLPSLALGLIFGYAMKNSGLW LASRREQHSANTAVTK" gene complement(1228014..1228860) /gene="csgG" /locus_tag="STM1139" /db_xref="GeneID:1252657" CDS complement(1228014..1228847) /gene="csgG" /locus_tag="STM1139" /note="curli production assembly/transport component CSGG precursor. (SW:CSGG_SALTY)" /codon_start=1 /transl_table=11 /product="curli production assembly/transport protein CsgG" /protein_id="NP_460110.1" /db_xref="GI:16764495" /db_xref="GeneID:1252657" /translation="MPRLLILVAVLLLSGCLTAPPKQAAKPTLMPRAQSYKDLTHLPA PTGKIFVSVYNIQDETGQFKPYPASNFSTAVPQSATAMLVTALKDSRWFIPLERQGLQ NLLNERKIIRAAQENGTVAMNNRIPLQSLTAANIMVEGSIIGYESNVKSGGVGARYFG IGADTQYQLDQIAVNLRVVNVSTGEILSSVNTSKTILSYEVQAGVFRFIDYQRLLEGE IGYTSNEPVMLCLMSAIETGVIFLINDGIDRGLWDLQNKADRQNDILVKYRELSVPPE S" regulatory complement(1228855..1228860) /regulatory_class="ribosome_binding_site" /gene="csgG" /locus_tag="STM1139" /note="putative RBS for csgG; RegulonDB:STMS1H001409" gene complement(1228874..1229302) /gene="csgF" /locus_tag="STM1140" /db_xref="GeneID:1252658" CDS complement(1228874..1229290) /gene="csgF" /locus_tag="STM1140" /note="curli production assembly/transport component CSGF precursor. (SW:CSGF_SALTY)" /codon_start=1 /transl_table=11 /product="curli assembly protein CsgF" /protein_id="NP_460111.1" /db_xref="GI:16764496" /db_xref="GeneID:1252658" /translation="MRVKHAVVLLMLFSPLTWAGNMTFQFRNPNFGGNPNNGSFLLNS AQAQNSYKDPAYDNDFGIETPSALDNFTQAIQSQILGGLLTNINTGKPGRMVTNDFII DIANRDGQLQLNVTDRKTGRTSTIEVSGLQTQSTDF" regulatory complement(1229297..1229302) /regulatory_class="ribosome_binding_site" /gene="csgF" /locus_tag="STM1140" /note="putative RBS for csgF; RegulonDB:STMS1H001410" gene complement(1229317..1229726) /gene="csgE" /locus_tag="STM1141" /db_xref="GeneID:1252659" CDS complement(1229317..1229712) /gene="csgE" /locus_tag="STM1141" /note="curli production assembly/transport component CSGE precursor. (SW:CSGE_SALTY)" /codon_start=1 /transl_table=11 /product="curli assembly protein CsgE" /protein_id="NP_460112.1" /db_xref="GI:16764497" /db_xref="GeneID:1252659" /translation="MKRYLTWIVAAELLFATGNLHANEVEVEVPGLLTDHTVSSIGHE FYRAFSDKWESEYTGNLTINERPSARWGSWITITVNQDVIFQTFLFPMKRDFEKTVVF ALAQTEEALNRRQIDQTLLSTSDLARDEF" gene complement(1229717..1230380) /gene="csgD" /locus_tag="STM1142" /db_xref="GeneID:1252660" CDS complement(1229717..1230367) /gene="csgD" /locus_tag="STM1142" /note="LuxR/UhpA family member; probable csgAB operon transcriptional regulatory protein. (SW:CSGD_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional regulator CsgD" /protein_id="NP_460113.1" /db_xref="GI:16764498" /db_xref="GeneID:1252660" /translation="MFNEVHSSHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQ RSLEDISAGCIVLMDMMEADKKLIHYWQDNLSRKNNNIKTLLLNTPDDYPYREIENWP HINGVFYATEDQEHVVSGLQGILRGECYFSQKLASYLITHSGNYRYNSTESALLTHRE KEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR" regulatory complement(1229721..1229726) /regulatory_class="ribosome_binding_site" /gene="csgE" /locus_tag="STM1141" /note="putative RBS for csgE; RegulonDB:STMS1H001411" regulatory complement(1230375..1230380) /regulatory_class="ribosome_binding_site" /gene="csgD" /locus_tag="STM1142" /note="putative RBS for csgD; RegulonDB:STMS1H001412" gene 1231000..1231577 /gene="csgB" /locus_tag="STM1143" /db_xref="GeneID:1252661" regulatory 1231000..1231008 /regulatory_class="minus_35_signal" /gene="csgB" /locus_tag="STM1143" /note="putative -35_signal for csgB; RegulonDB:STMLTH004473" regulatory 1231024..1231032 /regulatory_class="minus_10_signal" /gene="csgB" /locus_tag="STM1143" /note="putative -10_signal for csgB; RegulonDB:STMLTH004473" regulatory 1231110..1231115 /regulatory_class="ribosome_binding_site" /gene="csgB" /locus_tag="STM1143" /note="putative RBS for csgB; RegulonDB:STMS1H001413" CDS 1231122..1231577 /gene="csgB" /locus_tag="STM1143" /note="nucleator for assembly of adhesive surface organelles; minor curlin subunit precursor (fimbrin SEF17 minor subunit). (SW:CSGB_SALTY)" /codon_start=1 /transl_table=11 /product="curli minor subunit precursor" /protein_id="NP_460114.1" /db_xref="GI:16764499" /db_xref="GeneID:1252661" /translation="MKNKLLFMMLTILGAPGIATATNYDLARSEYNFAVNELSKSSFN QAAIIGQVGTDNSARVRQEGSKLLSVISQEGGNNRAKVDQAGNYNFAYIEQTGNANDA SISQSAYGNSAAIIQKGSGNKANITQYGTQKTAVVVQKQSHMAIRVTQR" gene 1231605..1232074 /gene="csgA" /locus_tag="STM1144" /db_xref="GeneID:1252662" regulatory 1231605..1231610 /regulatory_class="ribosome_binding_site" /gene="csgA" /locus_tag="STM1144" /note="putative RBS for csgA; RegulonDB:STMS1H001414" CDS 1231619..1232074 /gene="csgA" /locus_tag="STM1144" /note="coiled surface structures; cryptic; major curlin subunit precursor (fimbrin SEF17). (SW:CSGA_SALTY)" /codon_start=1 /transl_table=11 /product="curli major subunit" /protein_id="NP_460115.1" /db_xref="GI:16764500" /db_xref="GeneID:1252662" /translation="MKLLKVAAFAAIVVSGSALAGVVPQWGGGGNHNGGGNSSGPDST LSIYQYGSANAALALQSDARKSETTITQSGYGNGADVGQGADNSTIELTQNGFRNNAT IDQWNAKNSDITVGQYGGNNAALVNQTASDSSVMVRQVGFGNNATANQY" gene 1232127..1232462 /gene="csgC" /locus_tag="STM1145" /db_xref="GeneID:1252663" regulatory 1232127..1232132 /regulatory_class="ribosome_binding_site" /gene="csgC" /locus_tag="STM1145" /note="putative RBS for csgC; RegulonDB:STMS1H001415" CDS 1232136..1232462 /gene="csgC" /locus_tag="STM1145" /note="putative curlin production protein CSGC precursor. (SW:CSGC_SALTY)" /codon_start=1 /transl_table=11 /product="Curli assembly protein CsgC" /protein_id="NP_460116.1" /db_xref="GI:16764501" /db_xref="GeneID:1252663" /translation="MHTLLLLAALSNQITFTTTQQGDIYTVIPQVTLNEPCVCQVQIL SVRDGVGGQSHTQQKQTLSLPANQPIELSRLSVNISSEDSVKIIVTVSDGQSLHLSQQ WPPSAQ" gene 1232582..1232913 /gene="ymdA" /locus_tag="STM1146" /db_xref="GeneID:1252664" regulatory 1232582..1232587 /regulatory_class="ribosome_binding_site" /gene="ymdA" /locus_tag="STM1146" /note="putative RBS for ymdA; RegulonDB:STMS1H001416" CDS 1232593..1232913 /gene="ymdA" /locus_tag="STM1146" /note="hypothetical protein in csgC-mdoG intergenic region precursor. (SW:YMDA_SALTY)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460117.1" /db_xref="GI:16764502" /db_xref="GeneID:1252664" /translation="MSVIKKNIPAIGLCICAFFIHSAVGQQTVQGGVIHFRGAIVEPL CDISTHAENIDLTCLREGKKQMHRIDLRQASGLPQDIQSIATVRLHYLDAQKSLAVMN IEYR" gene 1232988..1233541 /locus_tag="STM1147" /db_xref="GeneID:1252665" regulatory 1232988..1232993 /regulatory_class="ribosome_binding_site" /locus_tag="STM1147" /note="putative RBS for STM1147; RegulonDB:STMS1H001417" CDS 1233002..1233541 /locus_tag="STM1147" /note="related to the C-terminal domain of histone macroH2A1; similar to E. coli putative polyprotein (AAC74129.1); Blastp hit to AAC74129.1 (177 aa), 76% identity in aa 1 - 177" /codon_start=1 /transl_table=11 /product="O-acetyl-ADP-ribose deacetylase" /protein_id="NP_460118.1" /db_xref="GI:16764503" /db_xref="GeneID:1252665" /translation="MTSRLQVIQGDITQLSVDAIVNAANASLMGGGGVDGAIHRAAGP ALLDACKLIRQQQGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYR NCLLLAEANHFRSIAFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYD EETARLYARLLTQQGDDPA" gene 1233480..1234964 /gene="ymdC" /locus_tag="STM1148" /db_xref="GeneID:1252666" CDS 1233480..1234964 /gene="ymdC" /locus_tag="STM1148" /note="similar to E. coli putative synthase (AAC74130.1); Blastp hit to AAC74130.1 (493 aa), 79% identity in aa 2 - 493" /codon_start=1 /transl_table=11 /product="putative phospholipase" /protein_id="NP_460119.3" /db_xref="GI:1109557613" /db_xref="GeneID:1252666" /translation="MKKLPGFTQDYLLSKATTLPDKTRLERAVEPLCARHPGECGILA LDNSLDAFAARYRLTEMAARTLDVQYYIWEDDMSGRLLFSVLLSAAKRGVHVRLLLDD NNTPGLDDTLRLLDSHPNIEVRLFNPFSFRTLRALGYLTDFARLNRRMHNKSYTADGV VTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVNDVANDFERYWRCSSVSTLQQVLS LSEQELTQRIELPESWYNDEITRRYLHKLETSQFMADLDRGTLPLIWAKTRLLSDDPS KGEGKAQRHSLLPQRLFDVMGSPTERIDIISAYFVPTRAGVAQLLNLVRKGVKIAILT NSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREHETAVHDRGLTGNSGSSLHAK TFSIDGSKVFIGSLNFDPRSTLLNTEMGFVIESETLATLIHKRFTQSQRDAAWQLRLD RWGRINWIDRQQEEEKVLKKEPATRFWQRVLVRLAAILPVEWLL" gene complement(1234981..1236153) /gene="mdoC" /locus_tag="STM1149" /db_xref="GeneID:1252667" CDS complement(1234981..1236135) /gene="mdoC" /locus_tag="STM1149" /note="required for succinyl substitution of glucan backbone of OPG (osmoregulated periplasmic glucan); similar to E. coli orf, hypothetical protein (AAC74131.1); Blastp hit to AAC74131.1 (385 aa), 82% identity in aa 1 - 379" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="NP_460120.1" /db_xref="GI:16764505" /db_xref="GeneID:1252667" /translation="MSSVPAPREYFLDSIRAWLMLLGIPFHISLIYSTHSWHVNSAAP SWWLTLFNDFIHAFRMQVFFVISGYFSYMLFLRYPLKHWWKVRVERVGIPMLTAIPLL TLPQFILLQYVKEKTENWPTLSAYEKYNTLAWELISHLWFLLVLVILTTVSIGIFTWF QKRQETSKPRPAAISLAKLSLIFFLLGVAYAAIRRIIFIVYPAILSDGMFNFIVMQTL FYVPFFILGALAFIHPDLKARFTTPSRGCTLGAAVAFIAYLLNQRYGSGDAWMYETES VITMVMGLWMVNVVFSLGHRLLNFQSARVTYFVNASLFIYLVHHPLTLFFGAYITPHI SSNLIGFLCGLIFVMGIALILYEIHLRIPLLKFLFSGKPPVKRESRATIG" regulatory complement(1236148..1236153) /regulatory_class="ribosome_binding_site" /gene="mdoC" /locus_tag="STM1149" /note="putative RBS for mdoC; RegulonDB:STMS1H001418" gene 1236311..1237942 /gene="mdoG" /locus_tag="STM1150" /db_xref="GeneID:1252668" regulatory 1236311..1236319 /regulatory_class="minus_35_signal" /gene="mdoG" /locus_tag="STM1150" /note="putative -35_signal for mdoG; RegulonDB:STMLTH004474" regulatory 1236335..1236343 /regulatory_class="minus_10_signal" /gene="mdoG" /locus_tag="STM1150" /note="putative -10_signal for mdoG; RegulonDB:STMLTH004474" CDS 1236407..1237942 /gene="mdoG" /locus_tag="STM1150" /note="similar to E. coli periplasmic glucans biosynthesis protein (AAC74132.1); Blastp hit to AAC74132.1 (511 aa), 93% identity in aa 1 - 511" /codon_start=1 /transl_table=11 /product="periplasmic glucans biosynthesis protein" /protein_id="NP_460121.1" /db_xref="GI:16764506" /db_xref="GeneID:1252668" /translation="MMKMRWLGAAIMLTLYASSSWAFSIDDVAKQAQSLAGKGYEAPK SNLPSVFRDMKYADYQQIQFNSDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATT VKRIKYSPDYFNFGNVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVI GAGQVYGLSARGLAIDTALPSGEEFPRFREFWIERPKPTDKRLTVYALLDSPRATGAY RFVIIPGRDTVVDVQSKVYLRDKVGKLGVAPLTSMFLFGPNQPSPTTNYRPELHDSNG LSIHAGNGEWIWRPLNNPKHLAVSSYAMENPQGFGLLQRGREFSRFEDLDDRYDLRPS AWITPKGDWGKGKVELVEIPTNDETNDNIVAYWTPDQLPEPGKEMNFKYTLTFSRDED KLHAPDNAWVLQTRRSTGDVKQSNLIRQPDGTIAFVVDFVGADMKKLPPDTPVAAQTS IGDNGEIVDSNVRYNPVTKGWRLMLRVKVKDAKKTTEMRAALVNADQTLSETWSYQLP ANE" gene 1237935..1240478 /gene="mdoH" /locus_tag="STM1151" /db_xref="GeneID:1252669" CDS 1237935..1240478 /gene="mdoH" /locus_tag="STM1151" /note="synthesis of membrane-derived oligosaccharide (MDO)/synthesis of OPGs (osmoregulated periplasmic glucans); similar to E. coli membrane glycosyltransferase; synthesis of membrane-derived oligosaccharide (MDO) (AAC74133.1); Blastp hit to AAC74133.1 (847 aa), 94% identity in aa 1 - 840" /codon_start=1 /transl_table=11 /product="glucan biosynthesis glucosyltransferase H" /protein_id="NP_460122.1" /db_xref="GI:16764507" /db_xref="GeneID:1252669" /translation="MNKTTEYIDALLLSEREKAALPKTDIRAVHQALDAEHRTYSRED DSPQGSVKARLEHAWPDSLAKGQLIKDDEGRDQLQAMPKATRSSMFPDPWRTNPVGRF WDRLRGRDVTPRYVSRLTKEEQASEQKWRTVGTIRRYILLILTLAQTVVATWYMKTIL PYQGWALINPMDMVGQDIWVSFMQLLPYMLQTGILILFAVLFCWVSAGFWTALMGFLQ LLIGRDKYSISASTVGDEPLNPEHRTALIMPICNEDVSRVFAGLRATWESVKATGNAA HFDVYILSDSYNPDICVAEQKAWMELIAEVQGEGQIFYRRRRRRMKRKSGNIDDFCRR WGNQYSYMVVLDADSVMSGECLSGLVRLMEANPNAGIIQSSPKASGMDTLYARCQQFA TRVYGPLFTAGLHFWQLGESHYWGHNAIIRVKPFIEHCALAPLPGEGSFAGSILSHDF VEAALMRRAGWGVWIAYDLPGSYEELPPNLLDELKRDRRWCHGNLMNFRLFLVKGMHP VHRAVFLTGVMSYLSAPLWFMFLALSTALQVVHALTEPQYFLQPRQLFPVWPQWRPEL AIALFASTMVLLFLPKLLSIMLIWCKGTKEYGGFWRVTLSLLLEVLFSVLLAPVRMLF HTVFVVSAFLGWEVVWNSPQRDDDSTPWGEAFMRHGSQLLLGLVWAVGMAWLDLRFLF WLAPIVFSLILSPFVSVISSRSTVGLRTKRWKLFLIPEEYSPPQVLVDTDKYLEMNRR RILDDGFMHAVFNPSLNALATAMATARHRASKVLEIARDRHVEQALNETPEKLNRDRR LVLLSDPVTMARLHYRVWNAPERYSSWVNHYQSLVLNPQALQGRTSSAR" gene 1240542..1240779 /gene="yceK" /locus_tag="STM1152" /db_xref="GeneID:1252670" regulatory 1240542..1240547 /regulatory_class="ribosome_binding_site" /gene="yceK" /locus_tag="STM1152" /note="putative RBS for yceK; RegulonDB:STMS1H001419" CDS 1240552..1240779 /gene="yceK" /locus_tag="STM1152" /note="similar to E. coli orf, hypothetical protein (AAC74134.1); Blastp hit to AAC74134.1 (75 aa), 86% identity in aa 1 - 75" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460123.1" /db_xref="GI:16764508" /db_xref="GeneID:1252670" /translation="MRIFAVSIMVITLSGCGSIISRTIPGQGHGNQYYPGVQWDMRDS AWRYITILDLPFSLIFDTLLLPLDIHHGPYE" gene complement(1240780..1241167) /gene="msyB" /locus_tag="STM1153" /db_xref="GeneID:1252671" CDS complement(1240780..1241154) /gene="msyB" /locus_tag="STM1153" /note="similar to E. coli acidic protein suppresses mutants lacking function of protein export (AAC74135.1); Blastp hit to AAC74135.1 (125 aa), 92% identity in aa 2 - 125" /codon_start=1 /transl_table=11 /product="secY/secA suppressor protein" /protein_id="NP_460124.1" /db_xref="GI:16764509" /db_xref="GeneID:1252671" /translation="MTMYATLEEAIDAAREEFLADHPGLEQDEANVQQFNVQKYVLQD GDIMWQVEFFADEGEDGECLPMLSGEAAQSVFDGDYDEIEIRQEWQEENTLHEWDEGE FQLEPPLDTEEGRTAADEWDER" regulatory complement(1241162..1241167) /regulatory_class="ribosome_binding_site" /gene="msyB" /locus_tag="STM1153" /note="putative RBS for msyB; RegulonDB:STMS1H001420" gene complement(1241236..1242460) /gene="yceE" /locus_tag="STM1154" /db_xref="GeneID:1252672" CDS complement(1241236..1242450) /gene="yceE" /locus_tag="STM1154" /note="similar to E. coli putative transport protein (AAC74137.1); Blastp hit to AAC74137.1 (408 aa), 27% identity in aa 1 - 404" /codon_start=1 /transl_table=11 /product="multidrug transporter subunit MdtG" /protein_id="NP_460125.1" /db_xref="GI:16764510" /db_xref="GeneID:1252672" /translation="MSPSDVPINWKRNLTVTWLGCFLTGAAFSLVMPFLPLYVEQLGV TGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMAIVMLLMGMA QNIWQFLILRALLGLLGGFIPNANALIATQVPRHKSGWALGTLSTGGVSGALLGPLAG GLLADHYGLRPVFFITASVLFICFLLTFFFIRENFLPVSKKEMLHVREVVASLKNPRL VLSLFVTTLIIQVATGSIAPILTLYVRELAGDVSNIAFISGMIASVPGVAALLSAPRL GKLGDRIGPEKILIVALIISVLLLIPMSFVQTPWQLALLRFLLGAADGALLPAVQTLL VYNSTNQIAGRIFSYNQSFRDIGNVTGPLMGAAISASYGFRAVFCVTAGVVLFNAIYS WNSLRRRRLAIE" regulatory complement(1242455..1242460) /regulatory_class="ribosome_binding_site" /gene="yceE" /locus_tag="STM1154" /note="putative RBS for yceE; RegulonDB:STMS1H001421" gene complement(1242605..1243535) /gene="htrB" /locus_tag="STM1155" /db_xref="GeneID:1252673" CDS complement(1242605..1243525) /gene="htrB" /locus_tag="STM1155" /EC_number="2.3.1.-" /note="similar to E. coli heat shock protein (AAC74138.1); Blastp hit to AAC74138.1 (306 aa), 83% identity in aa 1 - 306" /codon_start=1 /transl_table=11 /product="lipid A biosynthesis lauroyl acyltransferase" /protein_id="NP_460126.1" /db_xref="GI:16764511" /db_xref="GeneID:1252673" /translation="MTKLPKFSVALLHPRYWLTWLGIGALWLVVQLPYPVIYKLGCAL GHLARRVMKRRAKIAYRNLELCFPEMSAQERHTMVVKNFESVGMGVMETGMAWFWPDR RVNRWMEASGLEHIREVKAQGLGFILVGIHFLTLEFGARMFGMHNPGIGVYRPNDNPL LDWLQTWGRLRSNKSMLDRKDLKGMVKALKSGELIWYAPDHDYGPRASVFVPLFAVDQ AATTSGTWMLARMSKACIIPFVPRRKPDGKGYELIILPAEYSPPLESAEATAAWMNKI VEQCIMMAPEQYMWLHRRFKTRPEGVPSRY" regulatory complement(1243530..1243535) /regulatory_class="ribosome_binding_site" /gene="htrB" /locus_tag="STM1155" /note="putative RBS for htrB; RegulonDB:STMS1H001422" gene 1243730..1244797 /gene="yceA" /locus_tag="STM1156" /db_xref="GeneID:1252674" regulatory 1243730..1243735 /regulatory_class="ribosome_binding_site" /gene="yceA" /locus_tag="STM1156" /note="putative RBS for yceA; RegulonDB:STMS1H001423" CDS 1243745..1244797 /gene="yceA" /locus_tag="STM1156" /note="similar to E. coli orf, hypothetical protein (AAC74139.1); Blastp hit to AAC74139.1 (350 aa), 88% identity in aa 1 - 350" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460127.1" /db_xref="GI:16764512" /db_xref="GeneID:1252674" /translation="MPVLHNRISNDELKAKMLAESEPRTTISFYKYFTIASPQQTRDA LYQVFTALDVFGRVYLAHEGINAQISVPQSKLETFRQQLYTFDPALDGVRLNIALEDD GKSFWVLRMKVRDRIVADGIDDPTFDASNVGDYLKAADVNAMLDDPDAVFIDMRNHYE YEVGHFENALEIPADTFREQLPKAVEMLREHADKKIVMYCTGGIRCEKASAWMKHNGF NKVWHIEGGIIEYARRARAQGLPVRFIGKNFVFDERMGERISDEVIAHCHQCGASCDS HTNCKNDGCHLLFIQCPQCASKFNGCCSEQCCEELALPEEEQRRRRAGRENGNKIFNK SRGRLNSKLSIPDPAE" gene complement(1244849..1245437) /gene="yceI" /locus_tag="STM1157" /db_xref="GeneID:1252675" CDS complement(1244849..1245424) /gene="yceI" /locus_tag="STM1157" /note="similar to E. coli orf, hypothetical protein (AAC74140.1); Blastp hit to AAC74140.1 (191 aa), 91% identity in aa 1 - 191" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460128.1" /db_xref="GI:16764513" /db_xref="GeneID:1252675" /translation="MKKNLLGFTLASLLFTTGSAVAAEYKIDKEGQHAFVNFRIQHLG YSWLYGTFKDFDGTFTFDEKNPSADKVNVTINTNSVDTNHAERDKHLRSAEFLNVAKF PQATFTSTSVKKEGDELDITGNLTLNGVTKPVTLEAKLMGQGDDPWGGKRAGFEAEGK IKLKDFNITTDLGPASQEVELIISVEGVQQK" gene complement(1245421..1246004) /locus_tag="STM1158" /db_xref="GeneID:1252676" CDS complement(1245421..1245993) /locus_tag="STM1158" /note="similar to E. coli putative cytochrome (AAC74141.1); Blastp hit to AAC74141.1 (188 aa), 77% identity in aa 1 - 187" /codon_start=1 /transl_table=11 /product="cytochrome B" /protein_id="NP_460129.1" /db_xref="GI:16764514" /db_xref="GeneID:1252676" /translation="MQFKNTPQRYGVVSAALHWLTALVVYGMFALGLWMVTLSYYDGW YHQAPEIHKSIGILLMMALIVRIIWRLYSPPPVALTSYSRLTRIGAAAGHLLLYLLLF AIIISGYLISTADGKPISVFGWFEIPATLTDAGAQADIAGTLHLWFAWSLVIISLSHG VMALKHHFIDKDDTLKRMTGMSSSDYGAQK" regulatory complement(1245432..1245437) /regulatory_class="ribosome_binding_site" /locus_tag="STM1158" /note="putative RBS for yceI; RegulonDB:STMS1H001424" regulatory complement(1245999..1246004) /regulatory_class="ribosome_binding_site" /locus_tag="STM1158" /note="putative RBS for STM1158; RegulonDB:STMS1H001425" gene complement(1246256..1246379) /gene="yceO" /locus_tag="STM1159" /db_xref="GeneID:1252677" CDS complement(1246256..1246369) /gene="yceO" /locus_tag="STM1159" /note="similar to E. coli orf, hypothetical protein (AAC74142.1); Blastp hit to AAC74142.1 (46 aa), 64% identity in aa 10 - 46" /codon_start=1 /transl_table=11 /product="DUF2770 domain-containing protein" /protein_id="NP_460130.1" /db_xref="GI:16764515" /db_xref="GeneID:1252677" /translation="MRRLFHFLMNNIREHFMLYVILWSLLAVMDIVYLLFF" regulatory complement(1246374..1246379) /regulatory_class="ribosome_binding_site" /gene="yceO" /locus_tag="STM1159" /note="putative RBS for yceO; RegulonDB:STMS1H001426" gene complement(1246410..1247537) /gene="solA" /locus_tag="STM1160" /db_xref="GeneID:1252678" CDS complement(1246410..1247528) /gene="solA" /locus_tag="STM1160" /EC_number="1.5.3.1" /note="similar to E. coli sarcosine oxidase-like protein (AAC74143.1); Blastp hit to AAC74143.1 (372 aa), 84% identity in aa 1 - 371" /codon_start=1 /transl_table=11 /product="N-methyltryptophan oxidase" /protein_id="NP_460131.1" /db_xref="GI:16764516" /db_xref="GeneID:1252678" /translation="MKYDLIIIGSGSVGAAAGYYATRAGLKVLMTDAHMPPHQQGSHH GDTRLIRHAYGEGEKYVPLVLRAQTLWDELSTHNEEPIFVRSGVVNLGPADSAFLANV ARSAQQWQLNVERLDATALMTRWPEIRVPDNYIGLFEADSGFLRSELAITTWLRLARE AGCAQLFNSPVSHIHHDDNGVTIETSEGCYHASKALISAGTWVKALVPELPVQPVRKV FAWFKADGRYSTKNRFPAFTGEMPNGDQYYGFPAENDELKIGKHNGGQLIQAPEERKP FAAVASDGAEAFPFLRNVLPGIGGCLHGAACTYDNSPDEDFIIDTLPGHENTLVITGL SGHGFKFAPVLGEIAADFALGKTPSFDLTPFRLSRFSQ" regulatory complement(1247532..1247537) /regulatory_class="ribosome_binding_site" /gene="solA" /locus_tag="STM1160" /note="putative RBS for solA; RegulonDB:STMS1H001427" gene complement(1247641..1247907) /gene="yceP" /locus_tag="STM1161" /db_xref="GeneID:1252679" CDS complement(1247641..1247895) /gene="yceP" /locus_tag="STM1161" /note="similar to E. coli orf, hypothetical protein (AAC74144.1); Blastp hit to AAC74144.1 (84 aa), 94% identity in aa 1 - 84" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_460132.3" /db_xref="GI:161353564" /db_xref="GeneID:1252679" /translation="MEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQTPNRPEPEGT EVGQTLWLTTDVARQFISILEAGIAKIESGDYQENEYRRH" regulatory complement(1247902..1247907) /regulatory_class="ribosome_binding_site" /gene="yceP" /locus_tag="STM1161" /note="putative RBS for yceP; RegulonDB:STMS1H001428" gene complement(1248185..1248442) /gene="dinI" /locus_tag="STM1162" /db_xref="GeneID:1252680" CDS complement(1248185..1248430) /gene="dinI" /locus_tag="STM1162" /note="inhibits UmuD processing; similar to E. coli damage-inducible protein I (AAC74145.1); Blastp hit to AAC74145.1 (81 aa), 85% identity in aa 1 - 81" /codon_start=1 /transl_table=11 /product="DNA damage-inducible protein I" /protein_id="NP_460133.1" /db_xref="GI:16764518" /db_xref="GeneID:1252680" /translation="MRIEVTIAKTSPLPAGAIDALAGELSRRISHHFPENLGNVTVRY ATANNLSVIGASKEDKERISEILQETWESADDWFINE" regulatory complement(1248437..1248442) /regulatory_class="ribosome_binding_site" /gene="dinI" /locus_tag="STM1162" /note="putative RBS for dinI; RegulonDB:STMS1H001429" gene complement(1248504..1249628) /gene="pyrC" /locus_tag="STM1163" /db_xref="GeneID:1252681" CDS complement(1248504..1249550) /gene="pyrC" /locus_tag="STM1163" /EC_number="3.5.2.3" /note="dihydroorotase. (SW:PYRC_SALTY)" /codon_start=1 /transl_table=11 /product="dihydroorotase" /protein_id="NP_460134.1" /db_xref="GI:16764519" /db_xref="GeneID:1252681" /translation="MTAPSQVLKIRRPDDWHVHLRDGDMLKTVVPYTSEIYGRAIVMP NLASPITTVDAAIAYRQRILDAVPAGHDFTPLMTCYLTDSLDADELERGFHEGVFTAA KLYPANATTNSSHGVTSVDAIMPVLERMEKLGIPLLVHGEVTHADVDIFDREARFIDT VMEPLRQRLTALKVVFEHITTKDAAQYVRDGNDYLAATITPQHLMFNRNDMLVGGIRP HLYCLPILKRNIHQQALRELVASGFTRAFLGTDSAPHSRHRKETSCGCAGCFNAPSAL GSYAAVFEEMNALAHFEAFCSLNGPQFYGLPMNTGWVELVRDEQQIPGNIALADDSLV PFLAGETVRWSVKK" regulatory complement(1249558..1249563) /regulatory_class="ribosome_binding_site" /gene="pyrC" /locus_tag="STM1163" /note="putative RBS for pyrC; RegulonDB:STMS1H001430" regulatory complement(1249600..1249608) /regulatory_class="minus_10_signal" /gene="pyrC" /locus_tag="STM1163" /note="putative -10_signal for pyrC; RegulonDB:STMLTH004476" protein_bind complement(1249603..1249619) /gene="pyrC" /locus_tag="STM1163" /note="putative binding site for PurR, RegulonDB: STMS1H000357" /bound_moiety="PurR" regulatory complement(1249620..1249628) /regulatory_class="minus_35_signal" /gene="pyrC" /locus_tag="STM1163" /note="putative -35_signal for pyrC; RegulonDB:STMLTH004476" gene complement(1249655..1250225) /gene="yceB" /locus_tag="STM1164" /db_xref="GeneID:1252682" CDS complement(1249655..1250215) /gene="yceB" /locus_tag="STM1164" /note="hypothetical protein in pyrC 3'region. (SW:YCEB_SALTY)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460135.1" /db_xref="GI:16764520" /db_xref="GeneID:1252682" /translation="MKKFFFAAALVVSGLLVGCNQLTQYTISEQEINQALEKRNNFSK DIGLPGIADAHIVLTNLVSQIGREEPNKVTLTGDARLDMNSLFGSQKATMKLKLKALP VFDKEKGAIYLQEMEVVDATVTPEKMQSVLQTLLPYLNQSLRSYFNQRPAYVLREDSS KGEALAKKLAKGIEVKPGEIVIPFTN" regulatory complement(1250220..1250225) /regulatory_class="ribosome_binding_site" /gene="yceB" /locus_tag="STM1164" /note="putative RBS for yceB; RegulonDB:STMS1H001431" gene complement(1250340..1250997) /gene="grxB" /locus_tag="STM1165" /db_xref="GeneID:1252683" CDS complement(1250340..1250987) /gene="grxB" /locus_tag="STM1165" /note="similar to E. coli glutaredoxin 2 (AAC74148.1); Blastp hit to AAC74148.1 (215 aa), 85% identity in aa 1 - 215" /codon_start=1 /transl_table=11 /product="glutaredoxin, GrxB family" /protein_id="NP_460136.1" /db_xref="GI:16764521" /db_xref="GeneID:1252683" /translation="MKLYIYDHCPFCVKARMIFGLKNIPVELNVLQNDDEATPTRMIG QKMVPILQKDDSRYLPESMDIVHYVDNLDGKPLLTGKRNPAIEEWLRKVNGYVNQLLL PRFAKSAFDEFSTPAARQYFIRKKEASSGSFDNHLAHSAGLIKKIGDDLRLLDKLIVQ PNAVNGELSEDDIHLFPLLRNLTLVAGIHWPTKVADYRDNMAKQTQINLLSSMAI" regulatory complement(1250992..1250997) /regulatory_class="ribosome_binding_site" /gene="grxB" /locus_tag="STM1165" /note="putative RBS for grxB; RegulonDB:STMS1H001432" gene complement(1251051..1252267) /gene="yceL" /locus_tag="STM1166" /db_xref="GeneID:1252684" CDS complement(1251051..1252259) /gene="yceL" /locus_tag="STM1166" /note="similar to E. coli orf, hypothetical protein (AAC74149.1); Blastp hit to AAC74149.1 (412 aa), 92% identity in aa 11 - 412" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_460137.1" /db_xref="GI:16764522" /db_xref="GeneID:1252684" /translation="MSRVSQARNLGKYFLLIDNMLVVLGFFVVFPLISIRFVDQMGWA AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMGIAHEPWLL WFSCFLSGLGGTLFDPPRSALVVKLIRPEQRDRFFSLLMMQDSAGAVIGALLGSWLLQ YDFRLVCATGAILFILCALFNAWLLPAWKLSTVRTPVREGMRRVMSDKRFVTYVLTLA GYYMLAVQVMLMLPIMVNDIAGSPAAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHR LMAGLLVMSLSMLPIGMVGNLQQLFTLICAFYIGSVIAEPARETLSASLADARARGSY MGFSRLGLAIGGAIGYIGGGWLFDMGKALAQPELPWMMLGIIGFITFLALGWQFSHKR TPRRMLEPGA" regulatory complement(1252262..1252267) /regulatory_class="ribosome_binding_site" /gene="yceL" /locus_tag="STM1166" /note="putative RBS for yceL; RegulonDB:STMS1H001433" gene 1252476..1253080 /gene="rimJ" /locus_tag="STM1167" /db_xref="GeneID:1252685" regulatory 1252476..1252481 /regulatory_class="ribosome_binding_site" /gene="rimJ" /locus_tag="STM1167" /note="putative RBS for rimJ; RegulonDB:STMS1H001434" CDS 1252496..1253080 /gene="rimJ" /locus_tag="STM1167" /EC_number="2.3.1.128" /note="similar to E. coli acetylation of N-terminal alanine of 30S ribosomal subunit protein S5 (AAC74150.1); Blastp hit to AAC74150.1 (194 aa), 95% identity in aa 1 - 194" /codon_start=1 /transl_table=11 /product="ribosomal protein S5 alanine N-acetyltransferase" /protein_id="NP_460138.1" /db_xref="GI:16764523" /db_xref="GeneID:1252685" /translation="MFGYRSNVPKVRLTTDRLVVRLVHERDAWRLADYYAENRHFLKP WEPVRDESHCYPSGWQARLGMIGEFHKQGSAFYFALLDPEEKEIIGVANFSNVVRGSF HACYLGYSIAQKWQGQGLMFEALTAAIRYMQRTQHIHRIMANYMPHNKRSGALLARLG FEKEGYAKDYLLIDGQWRDHVLTALTTPLWTPGR" gene 1253097..1253763 /gene="yceH" /locus_tag="STM1168" /db_xref="GeneID:1252686" regulatory 1253097..1253102 /regulatory_class="ribosome_binding_site" /gene="yceH" /locus_tag="STM1168" /note="putative RBS for yceH; RegulonDB:STMS1H001435" CDS 1253116..1253763 /gene="yceH" /locus_tag="STM1168" /note="similar to E. coli orf, hypothetical protein (AAC74151.1); Blastp hit to AAC74151.1 (215 aa), 86% identity in aa 1 - 215" /codon_start=1 /transl_table=11 /product="DUF480 domain-containing protein" /protein_id="NP_460139.1" /db_xref="GI:16764524" /db_xref="GeneID:1252686" /translation="MKYELTATEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNR EPVMNLTEQEVQEQLDNLVKRHFLRTVSGFGNRVTKYEQRFCNSEFGDLKLSAAEVAL VTTLLLRGAQTPGELRSRASRMHEFSDMAEVESTLERLASREDGPYVVRLAREPGKRE SRYMHLFCGDVDELSLQTSAPESASGDLQSRVEALESEVAELKQRLDSLLAHLGE" gene 1253752..1254688 /gene="mviM" /locus_tag="STM1169" /db_xref="GeneID:1252687" regulatory 1253752..1253757 /regulatory_class="ribosome_binding_site" /gene="yceH" /locus_tag="STM1168" /note="putative RBS for mviM; RegulonDB:STMS1H001436" CDS 1253765..1254688 /gene="mviM" /locus_tag="STM1169" /note="virulence factor MVIM. (SW:MVIM_SALTY)" /codon_start=1 /transl_table=11 /product="virulence factor MviM" /protein_id="NP_460140.1" /db_xref="GI:16764525" /db_xref="GeneID:1252687" /translation="MRTLRIGIVGLGGIAQKAWLPVLTNTAGWTLQGAWSPSRDKALR ICESWRIPYVDSLANLASSCDAVFVHSSTASHYAVVSELLNAGVHVCVDKPLAENLRD AERLVALAAQKKLTLMVGFNRRFAPLYRELKTRLGTAASLRMDKHRTDSVGPHDLRFT LLDDYLHVVDTALWLAGGEARLASGTLLTSESGEMCYAEHHFSADKLQITTSMHRRAG SQRESVQAVTDGGLYDVTDMREWREERGQGILIKPIPSWQTTLEQRGFVGCARHFIDC VQNQTVPETAGEQAILAQRVVEALWRDAISE" gene 1254942..1256527 /gene="mviN" /locus_tag="STM1170" /db_xref="GeneID:1252688" regulatory 1254942..1254947 /regulatory_class="ribosome_binding_site" /gene="mviN" /locus_tag="STM1170" /note="putative RBS for mviN; RegulonDB:STMS1H001437" CDS 1254953..1256527 /gene="mviN" /locus_tag="STM1170" /note="virulence factor MVIM. (SW:MVIN_SALTY)" /codon_start=1 /transl_table=11 /product="putative virulence factor" /protein_id="NP_460141.1" /db_xref="GI:16764526" /db_xref="GeneID:1252688" /translation="MQEFYARVWNTKEMNLLKSLAAVSSMTMFSRVLGFARDAIVARI FGAGMATDAFFVAFKLPNLLRRIFAEGAFSQAFVPILAEYKSKQGEEATRIFVAYVSG LLTLALAVVTVAGMLAAPWVIMVTAPGFADTADKFALTTQLLRITFPYILLISLASLV GAILNTWNRFSIPAFAPTFLNISMIGFALFAAPYFNPPVLALAWAVTVGGVLQLVYQL PYLKKIGMLVLPRINFRDTGAMRVVKQMGPAILGVSVSQISLIINTIFASFLASGSVS WMYYADRLMEFPSGVLGVALGTILLPSLSKSFASGNHDEYCRLMDWGLRLCFLLALPS AVALGILAKPLTVSLFQYGKFTAFDAAMTQRALIAYSVGLIGLIVVKVLAPGFYSRQD IKTPVKIAIVTLIMTQLMNLAFIGPLKHAGLSLSIGLAACLNASLLYWQLRKQNIFTP QPGWMWFLMRLIISVLVMAAVLFGVLHIMPEWSQGSMLWRLLRLMAVVIAGIAAYFAA LAVLGFKVKEFVRRTA" gene complement(1256609..1257031) /gene="flgN" /locus_tag="STM1171" /db_xref="GeneID:1252689" CDS complement(1256609..1257031) /gene="flgN" /locus_tag="STM1171" /note="belived to be export chaperone for FlgK and FlgL; flagella synthesis protein FLGN. (SW:FLGN_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein FlgN" /protein_id="NP_460142.1" /db_xref="GI:16764527" /db_xref="GeneID:1252689" /translation="MTRLSEILDQMTTVLNDLKTVMDAEQQQLSVGQINGSQLQRITE EKSSLLATLDYLEQQRRLEQNAQRSANDDIAERWQAITEKTQHLRDLNQHNGWLLEGQ IERNQQALEVLKPHQEPTLYGADGQTSVSHRGGKKISI" gene complement(1257036..1257341) /gene="flgM" /locus_tag="STM1172" /db_xref="GeneID:1252690" CDS complement(1257036..1257329) /gene="flgM" /locus_tag="STM1172" /note="anti-sigma; negative regulator of flagellin synthesis (anti-sigma-28 factor). (SW:FLGM_SALTY)" /codon_start=1 /transl_table=11 /product="anti-sigma-28 factor FlgM" /protein_id="NP_460143.1" /db_xref="GI:16764528" /db_xref="GeneID:1252690" /translation="MSIDRTSPLKPVSTVQTRETSDTPVQKTRQEKTSAATSASVTLS DAQAKLMQPGVSDINMERVEALKTAIRNGELKMDTGKIADSLIREAQSYLQSK" regulatory complement(1257336..1257341) /regulatory_class="ribosome_binding_site" /gene="flgM" /locus_tag="STM1172" /note="putative RBS for flgM; RegulonDB:STMS1H001438" gene complement(1257421..1258094) /gene="flgA" /locus_tag="STM1173" /db_xref="GeneID:1252691" CDS complement(1257421..1258080) /gene="flgA" /locus_tag="STM1173" /note="assembly of basal-body periplasmic P ring; flagella basal body P-ring formation protein FLGA precursor. (SW:FLGA_SALTY)" /codon_start=1 /transl_table=11 /product="flagella basal body P-ring formation protein FlgA" /protein_id="NP_460144.1" /db_xref="GI:16764529" /db_xref="GeneID:1252691" /translation="MQTLKRGFAVAALLFSPLTMAQDINAQLTTWFSQRLAGFSDEVV VTLRSSPNLLPSCEQPAFSMTGSAKLWGNVNVVARCANEKRYLQVNVQATGNYVAVAA PIARGGKLTPANVTLKRGRLDQLPPRTVLDIRQIQDAVSLRDLAPGQPVQLTMIRQAW RVKAGQRVQVIANGEGFSVNAEGQAMNNAAVAQNARVRMTSGQIVSGTVDSDGNILIN L" regulatory complement(1258089..1258094) /regulatory_class="ribosome_binding_site" /gene="flgA" /locus_tag="STM1173" /note="putative RBS for flgA; RegulonDB:STMS1H001439" gene 1258229..1258653 /gene="flgB" /locus_tag="STM1174" /db_xref="GeneID:1252692" regulatory 1258229..1258234 /regulatory_class="ribosome_binding_site" /gene="flgB" /locus_tag="STM1174" /note="putative RBS for flgB; RegulonDB:STMS1H001440" CDS 1258237..1258653 /gene="flgB" /locus_tag="STM1174" /note="cell-proximal portion of basal-body rod; flagellar basal-body rod protein FLGB (putative proximal rod protein). (SW:FLGB_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar basal body rod protein FlgB" /protein_id="NP_460145.1" /db_xref="GI:16764530" /db_xref="GeneID:1252692" /translation="MLDRLDAALRFQQEALNLRAQRQEILAANIANADTPGYQARDID FASELKKVMVRGREETGGVALTLTSSHHIPAQAVSSPAVDLLYRVPDQPSLDGNTVDM DRERTQFADNSLKYQMGLTVLGSQLKGMMNVLQGGN" gene 1258643..1259061 /gene="flgC" /locus_tag="STM1175" /db_xref="GeneID:1252693" regulatory 1258643..1258648 /regulatory_class="ribosome_binding_site" /gene="flgC" /locus_tag="STM1175" /note="putative RBS for flgC; RegulonDB:STMS1H001441" CDS 1258657..1259061 /gene="flgC" /locus_tag="STM1175" /note="cell-proximal portion of basal-body rod; flagellar basal-body rod protein FLGC (putative proximal rod protein). (SW:FLGC_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar basal body rod protein FlgC" /protein_id="NP_460146.1" /db_xref="GI:16764531" /db_xref="GeneID:1252693" /translation="MALLNIFDIAGSALAAQSKRLNVAASNLANADSVTGPDGQPYRA KQVVFQVDAAPGQATGGVKVASVIESQAPEKLVYEPGNPLADANGYVKMPNVDVVGEM VNTMSASRSYQANIEVLNTVKSMMLKTLTLGQ" gene 1259061..1259771 /gene="flgD" /locus_tag="STM1176" /db_xref="GeneID:1252694" regulatory 1259061..1259066 /regulatory_class="ribosome_binding_site" /gene="flgD" /locus_tag="STM1176" /note="putative RBS for flgD; RegulonDB:STMS1H001442" CDS 1259073..1259771 /gene="flgD" /locus_tag="STM1176" /note="initiation of hook assembly; basal-body rod modification protein FLGD. (SW:FLGD_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar basal body rod modification protein" /protein_id="NP_460147.1" /db_xref="GI:16764532" /db_xref="GeneID:1252694" /translation="MSIAVNMNDPTNTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQL KNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGAISGQIDNSQSLQATTLIGHGVM VPGTTILAGKGAEEGAVTSTTPFGVELQQPADKVTATITDKDGRVVRTLEIGELRAGV HTFTWDGKQTDGTTVPNGSYNIAITASNGGTQLVAQPLQFALVQGVTKGSNGNLLDLG TYGTTTLDEVRQII" gene 1259786..1261009 /gene="flgE" /locus_tag="STM1177" /db_xref="GeneID:1252695" regulatory 1259786..1259791 /regulatory_class="ribosome_binding_site" /gene="flgE" /locus_tag="STM1177" /note="putative RBS for flgE; RegulonDB:STMS1H001443" CDS 1259798..1261009 /gene="flgE" /locus_tag="STM1177" /note="flagellar biosynthesis; flagellar hook protein flge. (SW:FLGE_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar hook protein FlgE" /protein_id="NP_460148.1" /db_xref="GI:16764533" /db_xref="GeneID:1252695" /translation="MSFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFA GSKVGLGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKL DENRNLVNMQGMQLTGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTTASMQINLNS TDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDP AATAPTTASTTLKFNENGILESGGTVNITTGTINGATAATFSLSFLNSMQQNTGANNI VATNQNGYKPGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNVW AATQASGVALLGTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQ DQILNTLVNLR" gene 1261017..1261785 /gene="flgF" /locus_tag="STM1178" /db_xref="GeneID:1252696" regulatory 1261017..1261022 /regulatory_class="ribosome_binding_site" /gene="flgF" /locus_tag="STM1178" /note="putative RBS for flgF; RegulonDB:STMS1H001444" CDS 1261030..1261785 /gene="flgF" /locus_tag="STM1178" /note="cell-proximal portion of basal-body rod; flagellar basal-body rod protein flgf (putative proximal rod protein). (SW:FLGF_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein FlgF" /protein_id="NP_460149.1" /db_xref="GI:16764534" /db_xref="GeneID:1252696" /translation="MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV PVDGLSLATRTLVTASTPGADMTPGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRN GNIQVGPTGQLTIQGHPVIGEGGPITVPEGSEITIAADGTISALNPGDPPNTVAPVGR LKLVKAEGNEVQRSDDGLFRLTAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMT DMIANARRFEMQMKVITSVDENEGRANQLLSMS" gene 1261788..1262581 /gene="flgG" /locus_tag="STM1179" /db_xref="GeneID:1252697" regulatory 1261788..1261793 /regulatory_class="ribosome_binding_site" /gene="flgG" /locus_tag="STM1179" /note="putative RBS for flgG; RegulonDB:STMS1H001445" CDS 1261799..1262581 /gene="flgG" /locus_tag="STM1179" /note="cell-distal portion of basal-body rod; flagellar basal-body rod protein flgg (distal rod protein). (SW:FLGG_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar basal-body rod protein FlgG" /protein_id="NP_460150.1" /db_xref="GI:16764535" /db_xref="GeneID:1252697" /translation="MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDL LYQTIRQPGAQSSEQTTLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGF FQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVT QQGQAAPVQVGQLNLTTFMNDTGLESIGENLYIETQSSGAPNESTPGLNGAGLLYQGY VETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQL" gene 1262630..1263334 /gene="flgH" /locus_tag="STM1180" /db_xref="GeneID:1252698" regulatory 1262630..1262635 /regulatory_class="ribosome_binding_site" /gene="flgH" /locus_tag="STM1180" /note="putative RBS for flgH; RegulonDB:STMS1H001446" CDS 1262636..1263334 /gene="flgH" /locus_tag="STM1180" /note="basal-body outer-membrane L (lipopolysaccharide layer) ring protein; flagellar l-ring protein precursor (basal body l-ring protein). (SW:FLGH_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar basal body L-ring protein" /protein_id="NP_460151.1" /db_xref="GI:16764536" /db_xref="GeneID:1252698" /translation="MQKYALHAYPVMALMVATLTGCAWIPAKPLVQGATTAQPIPGPV PVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKT SFGFDTVPRYLQGLFGNSRADMEASGGNSFNGKGGANASNTFSGTLTVTVDQVLANGN LHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNSVPSTQVADARIEYVGNGYINEAQN MGWLQRFFLNLSPM" gene 1263337..1264443 /gene="flgI" /locus_tag="STM1181" /db_xref="GeneID:1252699" regulatory 1263337..1263342 /regulatory_class="ribosome_binding_site" /gene="flgI" /locus_tag="STM1181" /note="putative RBS for flgI; RegulonDB:STMS1H001447" CDS 1263346..1264443 /gene="flgI" /locus_tag="STM1181" /note="flagellar p-ring protein precursor. (SW:FLGI_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein FlgA" /protein_id="NP_460152.1" /db_xref="GI:16764537" /db_xref="GeneID:1252699" /translation="MFKALAGIVLALVATLAHAERIRDLTSVQGVRENSLIGYGLVVG LDGTGDQTTQTPFTTQTLNNMLSQLGITVPTGTNMQLKNVAAVMVTASYPPFARQGQT IDVVVSSMGNAKSLRGGTLLMTPLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQL NGGRITNGAIIERELPTQFGAGNTINLQLNDEDFTMAQQITDAINRARGYGSATALDA RTVQVRVPSGNSSQVRFLADIQNMEVNVTPQDAKVVINSRTGSVVMNREVTLDSCAVA QGNLSVTVNRQLNVNQPNTPFGGGQTVVTPQTQIDLRQSGGSLQSVRSSANLNSVVRA LNALGATPMDLMSILQSMQSAGCLRAKLEII" gene 1264429..1265393 /gene="flgJ" /locus_tag="STM1182" /db_xref="GeneID:1252700" regulatory 1264429..1264434 /regulatory_class="ribosome_binding_site" /gene="flgJ" /locus_tag="STM1182" /note="putative RBS for flgJ; RegulonDB:STMS1H001448" CDS 1264443..1265393 /gene="flgJ" /locus_tag="STM1182" /note="flagellar protein flgj. (SW:FLGJ_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar rod assembly protein/muramidase FlgJ" /protein_id="NP_460153.1" /db_xref="GI:16764538" /db_xref="GeneID:1252700" /translation="MIGDGKLLASAAWDAQSLNELKAKAGQDPAANIRPVARQVEGMF VQMMLKSMREALPKDGLFSSDQTRLYTSMYDQQIAQQMTAGKGLGLADMMVKQMTSGQ TMPADDAPQVPLKFSLETVNSYQNQALTQLVRKAIPKTPDSSDAPLSGDSKDFLARLS LPARLASEQSGVPHHLILAQAALESGWGQRQILRENGEPSYNVFGVKATASWKGPVTE ITTTEYENGEAKKVKAKFRVYSSYLEALSDYVALLTRNPRYAAVTTAATAEQGAVALQ NAGYATDPNYARKLTSMIQQLKAMSEKVSKTYSANLDNLF" gene 1265447..1267119 /gene="flgK" /locus_tag="STM1183" /db_xref="GeneID:1252701" regulatory 1265447..1265452 /regulatory_class="ribosome_binding_site" /gene="flgK" /locus_tag="STM1183" /note="putative RBS for flgK; RegulonDB:STMS1H001449" CDS 1265458..1267119 /gene="flgK" /locus_tag="STM1183" /note="flagellar biosynthesis protein; flagellar hook-associated protein 1 (HAP1). (SW:FLGK_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar hook-associated protein FlgK" /protein_id="NP_460154.1" /db_xref="GI:16764539" /db_xref="GeneID:1252701" /translation="MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQA NSTLGAGGWIGNGVYVSGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADK SSSLSGSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNI AIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVS VQDGGTYNLTMANGYTLVQGSTARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLN TGSLGGLLTFRSQDLDQTRNTLGQLALAFADAFNAQHTKGYDADGNKGKDFFSIGSPV VYSNSNNADKTVSLTAKVVDSTKVQATDYKIVFDGTDWQVTRTADNTTFTATKDADGK LEIDGLKVTVGTGAQKNDSFLLKPVSNAIVDMNVKVTNEAEIAMASESKLDPDVDTGD SDNRNGQALLDLQNSNVVGGNKTFNDAYATLVSDVGNKTSTLKTSSTTQANVVKQLYK QQQSVSGVNLDEEYGNLQRYQQYYLANAQVLQTANALFDALLNIR" gene 1267119..1268087 /gene="flgL" /locus_tag="STM1184" /db_xref="GeneID:1252702" regulatory 1267119..1267124 /regulatory_class="ribosome_binding_site" /gene="flgL" /locus_tag="STM1184" /note="putative RBS for flgL; RegulonDB:STMS1H001450" CDS 1267134..1268087 /gene="flgL" /locus_tag="STM1184" /note="flagellar biosynthesis protein; flagellar hook-associated protein 3 (HAP3) (hook-filament junctionprotein). (SW:FLGL_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar hook-filament junction protein FlgL" /protein_id="NP_460155.1" /db_xref="GI:16764540" /db_xref="GeneID:1252702" /translation="MRISTQMMYEQNMSGITNSQAEWMKLGEQMSTGKRVTNPSDDPI AASQAVVLSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTL SDDDRASLATDLQGIRDQLMNLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSV TQQVDSARTMVIGHTGAQIFNSITSNAVPEPDGSDSEKNLFVMLDTAIAALKTPVEGN NVEKEKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSLGSDRALGQKLQMS NLVDVDWNSVISSYVMQQAALQASYKTFTDMQGMSLFQLNR" gene complement(1268344..1271547) /gene="rne" /locus_tag="STM1185" /db_xref="GeneID:1252703" CDS complement(1268344..1271547) /gene="rne" /locus_tag="STM1185" /EC_number="3.1.4.-" /note="similar to E. coli RNase E, membrane attachment, mRNA turnover, maturation 5S RNA (AAC74168.1); Blastp hit to AAC74168.1 (1061 aa), 82% identity in aa 1 - 1061" /codon_start=1 /transl_table=11 /product="ribonuclease E" /protein_id="NP_460156.1" /db_xref="GI:16764541" /db_xref="GeneID:1252703" /translation="MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKG KITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIV QIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLEL PEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAF RDYLRQDIGEILIDNPKVMEMARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIE SAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQL RLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRL SPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASY LLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVRKGEETPTLSYMLPKLHEE AMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSVATAKKDNVAAAQPAQP GLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRKPRQNNRRDRNERRDTRD NRAGRDGGESRDDNRRNRRQTQQQNAEARDTRQQETAEKVKTGDEQQQTPRRERSRRR NDDKRQAQQEVKALNREEQPVQETEQEERVQQVQPRRKQRQLNQKVRFTNSAVVETVD TPVVVDEPRPVENVEQPVPAPRTELAKVDLPVVADIAPEQDDSVEPRDNTGMPRRSRR SPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKVWIRYPIVRPQETQVVD EQREADLALPQPVVAEQQVIAATAALEPQASVQAVENVAVEPQTVAEPQAPEVVEVET THPEVIAAPVDEQPQLIAESDTPVAQEVIADAEPVAETADASITVAENVADVVVVEPE EETKAEAAVVEHTAEETVIAPAQVVEKSQDVVCVDDHNHASAPMTRAPAPEYVPETPH HSDWQRPSFHFEGKGAAGGHSATRHASAPATRPQPVE" gene 1271638..1272012 /locus_tag="STM1186" /note="pseudogene; in-frame stop following codon 97; no start near coli start" /pseudo /db_xref="GeneID:1252704" gene 1272121..1273080 /gene="rluC" /locus_tag="STM1187" /db_xref="GeneID:1252705" CDS 1272121..1273080 /gene="rluC" /locus_tag="STM1187" /EC_number="4.2.1.70" /note="similar to E. coli orf, hypothetical protein (AAC74170.1); Blastp hit to AAC74170.1 (319 aa), 97% identity in aa 1 - 319" /codon_start=1 /transl_table=11 /product="23S rRNA pseudouridine(955/2504/2580) synthase" /protein_id="NP_460157.1" /db_xref="GI:16764542" /db_xref="GeneID:1252705" /translation="MKTETPSVKIVAIAADEAGQRIDNFLRTQLKGVPKSMIYRILRK GEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHI LVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSAL RSLHEQLREKGMQKDYLALVRGQWQSHVKTVQAPLLKNILQSGERIVRVSQEGKPSET RFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDQQLTEAGTG LKRLFLHAAALKFTHPGTGEVMRIEAPMDNALKRCLQVLRNAK" gene 1273236..1273979 /locus_tag="STM1188" /db_xref="GeneID:1252706" CDS 1273236..1273979 /locus_tag="STM1188" /note="similar to E. coli orf, hypothetical protein (AAC76578.1); Blastp hit to AAC76578.1 (276 aa), 28% identity in aa 49 - 238" /codon_start=1 /transl_table=11 /product="putative inner membrane lipoprotein" /protein_id="NP_460158.1" /db_xref="GI:16764543" /db_xref="GeneID:1252706" /translation="MRSFTQRWGKYVIVPLVIAMLTGCEGKGDSSRRAFVEYLNTQII TSPVVGVCELTPAQRQAFGHYADDYDVLLTAYGQIFAVVYETGQEDKITGVIQSERDN LVFLNELRVARDVNNRFILRLKNVSSENRKKYSALKLPADVKPVFDAAWNKTVTPLDE TMTRYYFLRGKRLDQLVAMGEFLQKQGNKVRFETNGKAVFADLAAKEHFQDQQFNFFI TQNDINHLTQQMVEFINSQQDAADAGGVN" gene complement(1274481..1275077) /gene="yceF" /locus_tag="STM1189" /db_xref="GeneID:1252707" CDS complement(1274481..1275065) /gene="yceF" /locus_tag="STM1189" /note="similar to E. coli orf, hypothetical protein (AAC74171.1); Blastp hit to AAC74171.1 (207 aa), 88% identity in aa 14 - 205" /codon_start=1 /transl_table=11 /product="septum formation inhibitor Maf" /protein_id="NP_460159.1" /db_xref="GI:16764544" /db_xref="GeneID:1252707" /translation="MPRLILASTSPWRRALLEKLTIPFECAAPDVDETPMPGEAPRQL VLRLAQAKAQSLAARFPNHLIIGSDQICVLDGEITGKPLTEEKARQQLAKASGNIVTF YTGLALYNSASGHLQTEVEPFDVHFRHLSEAEIDDYVRKEHPLHCAGSFKSEGLGIAL FERLEGRDPNTLIGLPLIALCQMLRREGFNPLQQ" regulatory complement(1275072..1275077) /regulatory_class="ribosome_binding_site" /gene="yceF" /locus_tag="STM1189" /note="putative RBS for yceF; RegulonDB:STMS1H001451" gene 1275222..1275784 /gene="yceD" /locus_tag="STM1190" /db_xref="GeneID:1252708" regulatory 1275222..1275230 /regulatory_class="minus_35_signal" /gene="yceD" /locus_tag="STM1190" /note="putative -35_signal for yceD; RegulonDB:STMLTH004477" regulatory 1275246..1275254 /regulatory_class="minus_10_signal" /gene="yceD" /locus_tag="STM1190" /note="putative -10_signal for yceD; RegulonDB:STMLTH004477" CDS 1275263..1275784 /gene="yceD" /locus_tag="STM1190" /note="hypothetical protein in rne-rpmF intergenic region (G30K). (SW:YCED_SALTY)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460160.1" /db_xref="GI:16764545" /db_xref="GeneID:1252708" /translation="MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSD VECSMSFAIDNQRLAVLTGDAVVTVSLECQRCGKPFTHQVHTTYCFSPVRSDEQAEAL PEAYEPIEVNEFGEIDLLATVEDEIILALPVVPVHDSEHCEVSEADMVFGELPDEAQK PNPFAVLASLKRK" gene 1275822..1276009 /gene="rpmF" /locus_tag="STM1191" /db_xref="GeneID:1252709" regulatory 1275822..1275827 /regulatory_class="ribosome_binding_site" /gene="rpmF" /locus_tag="STM1191" /note="putative RBS for rpmF; RegulonDB:STMS1H001452" CDS 1275836..1276009 /gene="rpmF" /locus_tag="STM1191" /note="50S ribosomal protein L32. (SW:RL32_ECOLI)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L32" /protein_id="NP_460161.1" /db_xref="GI:16764546" /db_xref="GeneID:1252709" /translation="MAVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHIT ADGYYRGRKVIAK" gene 1276126..1277222 /gene="plsX" /locus_tag="STM1192" /db_xref="GeneID:1252710" regulatory 1276126..1276131 /regulatory_class="ribosome_binding_site" /gene="plsX" /locus_tag="STM1192" /note="putative RBS for plsX; RegulonDB:STMS1H001453" CDS 1276143..1277222 /gene="plsX" /locus_tag="STM1192" /note="fatty acid/phospholipid synthesis protein PLSX. (SW:PLSX_SALTY)" /codon_start=1 /transl_table=11 /product="phosphate acyltransferase" /protein_id="NP_460162.1" /db_xref="GI:16764547" /db_xref="GeneID:1252710" /translation="MTRLTLALDVMGGDFGPSVTVPAALQALNANSQLTLLLVGNPDI ITPLLAKADFEQRSRLQIIPAQSVIASDARPSQAIRASRGTSMRVALELVKEGRAEAC VSAGNTGALMGLAKLLLKPLEGIERPALVTVLPHQQKGKTVVLDLGANVDCDSTMLVQ FAVMGAVLAEEVVGIKNPRVALLNIGEEETKGLDSIREASLMLKTVPTINYIGYLEAN ELLTGKTDVLVCDGFTGNVTLKTMEGVVRMFLSLLKSQGEGKKRSWWLLLLKRWLQKS LTRRFSHLNPDQYNGACLLGLRGTVIKSHGAANQRAFAVAIEQAVQAVQRQVPQRIAA RLESVYPAGFEPLDDGKGVNLRAHR" gene 1277302..1278255 /gene="fabH" /locus_tag="STM1193" /db_xref="GeneID:1252711" CDS 1277302..1278255 /gene="fabH" /locus_tag="STM1193" /EC_number="2.3.1.41" /EC_number="2.3.1.38" /note="3-oxoacyl-[acyl-carrier-protein] synthase III. (SW:FABH_SALTY)" /codon_start=1 /transl_table=11 /product="3-oxoacyl-ACP synthase" /protein_id="NP_460163.1" /db_xref="GI:16764548" /db_xref="GeneID:1252711" /translation="MYTKIIGTGSYLPEQVRTNADLEKMVETSDEWIVTRTGIRKRHI AAPNETVATMGFTAANRAIEMAGIDKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG CPAFDVAAACAGFTYALSIADQYVKSGAVKHALVVGSDVLARTCDPGDRGTIIIFGDG AGAAVLSASEEPGIISTHLHADGRYGELLTLPNADRVNPDNPIYLTMAGNEVFKVAVT ELAHIVDETLAANNLDRSELDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTS AASVPCALDEAVRDGRIKAGQLVLLEAFGGGFTWGSALIRF" gene 1278259..1279200 /gene="fabD" /locus_tag="STM1194" /db_xref="GeneID:1252712" regulatory 1278259..1278264 /regulatory_class="ribosome_binding_site" /gene="fabD" /locus_tag="STM1194" /note="putative RBS for fabD; RegulonDB:STMS1H001454" CDS 1278271..1279200 /gene="fabD" /locus_tag="STM1194" /EC_number="2.3.1.39" /note="malonyl coA-acyl carrier protein transacylase. (SW:FABD_SALTY)" /codon_start=1 /transl_table=11 /product="[acyl-carrier-protein] S-malonyltransferase" /protein_id="NP_460164.1" /db_xref="GI:16764549" /db_xref="GeneID:1252712" /translation="MTQFAFVFPGQGSQSVGMLAEMAANYPIVEETFAEASAALGYDL WALTQQGPAEELNKTWQTQPALLTASVALWRVWQQQGGKMPALMAGHSLGEYSALVCA GVINFADAVRLVEMRGKFMQEAVPEGTGGMSAIIGLDDASIAKACEESAEGQVVSPVN FNSPGQVVIAGHKEAVERAGAACKAAGAKRALPLPVSVPSHCALMKPAADKLAVELAK ITFSAPTVPVVNNVDVKCETDAAAIRDALVRQLYNPVQWTKSVEFIAAQGVEHLYEVG PGKVLTGLTKRIVDTLTASALNEPAALSAALTQ" gene 1279203..1279947 /gene="fabG" /locus_tag="STM1195" /db_xref="GeneID:1252713" regulatory 1279203..1279208 /regulatory_class="ribosome_binding_site" /gene="fabG" /locus_tag="STM1195" /note="putative RBS for fabG; RegulonDB:STMS1H001455" CDS 1279213..1279947 /gene="fabG" /locus_tag="STM1195" /EC_number="1.1.1.100" /note="3-oxoacyl-[acyl-carrier protein] reductase. (SW:FABG_SALTY)" /codon_start=1 /transl_table=11 /product="3-oxoacyl-ACP reductase" /protein_id="NP_460165.1" /db_xref="GI:16764550" /db_xref="GeneID:1252713" /translation="MSFEGKIALVTGASRGIGRAIAETLVARGAKVIGTATSENGAKN ISDYLGANGKGLMLNVTDPASIESVLENIRAEFGEVDILVNNAGITRDNLLMRMKDDE WNDIIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTMGNAGQANYAAAKAGLIG FSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIASA VAFLASDEASYITGETLHVNGGMYMV" gene 1280087..1280339 /gene="acpP" /locus_tag="STM1196" /db_xref="GeneID:1252714" regulatory 1280087..1280092 /regulatory_class="ribosome_binding_site" /gene="acpP" /locus_tag="STM1196" /note="putative RBS for acpP; RegulonDB:STMS1H001456" CDS 1280103..1280339 /gene="acpP" /locus_tag="STM1196" /note="similar to E. coli acyl carrier protein (AAC74178.1); Blastp hit to AAC74178.1 (78 aa), 100% identity in aa 1 - 78" /codon_start=1 /transl_table=11 /product="acyl carrier protein" /protein_id="NP_460166.1" /db_xref="GI:16764551" /db_xref="GeneID:1252714" /translation="MSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELV MALEEEFDTEIPDEEAEKITTVQAAIDYINGHQA" gene 1280412..1281666 /gene="fabF" /locus_tag="STM1197" /db_xref="GeneID:1252715" regulatory 1280412..1280417 /regulatory_class="ribosome_binding_site" /gene="fabF" /locus_tag="STM1197" /note="putative RBS for fabF; RegulonDB:STMS1H001457" CDS 1280425..1281666 /gene="fabF" /locus_tag="STM1197" /EC_number="2.3.1.41" /note="similar to E. coli 3-oxoacyl-[acyl-carrier-protein] synthase II (AAC74179.1); Blastp hit to AAC74179.1 (413 aa), 94% identity in aa 1 - 413" /codon_start=1 /transl_table=11 /product="beta-ketoacyl-[acyl-carrier-protein] synthase II" /protein_id="NP_460167.1" /db_xref="GI:16764552" /db_xref="GeneID:1252715" /translation="MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTS AYATKFAGLVKDFNCDDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEVTEENASRIG AAIGSGIGGLGLIEENHSSLVKGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISI ATACTSGVHNIGHAARIIAYGDADAMVAGGAEKASTPLGVGGFGAARALSTRNDNPQA ASRPWDKERDGFVLGDGAGMLVLEEYEHAKARGAKIYAEIVGFGMSSDAYHMTSPPEN GAGAALAMVNALRDAAIEPAQIGYVNAHGTSTPAGDKAETQAVKSVFGDAASRVMVSS TKSMTGHLLGAAGAVESIFSILALRDQAIPPTINLDNPDEGCDLDFVPHEARQVSDLE YALCNSFGFGGTNGSLIFKKI" gene 1281779..1282599 /gene="pabC" /locus_tag="STM1198" /db_xref="GeneID:1252716" regulatory 1281779..1281784 /regulatory_class="ribosome_binding_site" /gene="pabC" /locus_tag="STM1198" /note="putative RBS for pabC; RegulonDB:STMS1H001458" CDS 1281790..1282599 /gene="pabC" /locus_tag="STM1198" /EC_number="4.-.-.-" /note="similar to E. coli 4-amino-4-deoxychorismate lyase (AAC74180.1); Blastp hit to AAC74180.1 (269 aa), 69% identity in aa 1 - 269" /codon_start=1 /transl_table=11 /product="aminodeoxychorismate lyase" /protein_id="NP_460168.1" /db_xref="GI:16764553" /db_xref="GeneID:1252716" /translation="MFLINGHAQDQLAVSDRATQFGDGSFTTARIVDGNICHLEAHLQ RLQVACEKLRIAFSHWSTLRQEMTMLATGHDSGVLKVIISRGSGGRGYSAMNCQAATR ILSVSAYPAYYSQWRKQGITLTLSPIPLGRNPYLAGLKHLNRLEQVLIRSHLEQTDAD EALVLDSEGWVTECCAANLFWRTGDIVFTPRLDQAGVNGIMRQFCLRQLAQSPFQVLE VQAREEAVRQADEIIICNALMPIIPIRAYHGTSYSSRTLFQFLAPFCEHPN" gene 1282602..1283624 /gene="yceG" /locus_tag="STM1199" /db_xref="GeneID:1252717" CDS 1282602..1283624 /gene="yceG" /locus_tag="STM1199" /note="similar to E. coli putative thymidylate kinase (AAC74181.1); Blastp hit to AAC74181.1 (340 aa), 85% identity in aa 1 - 340" /codon_start=1 /transl_table=11 /product="cell division protein YceG" /protein_id="NP_460169.1" /db_xref="GI:16764554" /db_xref="GeneID:1252717" /translation="MKKLSGVFLLLLVVLGIAVGVGMWKVRHLANSTLLIKDETIFTL KAGTGRLALGDQLYDEKIINRPRVFQWLLRVEPELSHFKAGTYRFTTGMTVREMLELL ESGKEAQFPLRFVEGMRLSDYLKQLREAPYIRHTLPDDDYATVAQALKLAHPEWVEGW FWPDTWMYTANTSDVAILKRAHQKMVKAVDTVWKGRAEGLPYKDQNQLVTMASIIEKE TAVASERDQVASVFINRLRIGMRLQTDPTVIYGMGTSYNGNLSRADLEKPTAYNTYTI TGLPPGPIASPSEASLQAAAHPAKTPYLYFVADGKGGHTFNTNLASHNRSVQEYLKVL KEKNGQ" gene 1283604..1284255 /gene="tmk" /locus_tag="STM1200" /db_xref="GeneID:1252718" regulatory 1283604..1283609 /regulatory_class="ribosome_binding_site" /gene="tmk" /locus_tag="STM1200" /note="putative RBS for tmk; RegulonDB:STMS1H001459" CDS 1283614..1284255 /gene="tmk" /locus_tag="STM1200" /EC_number="2.7.4.9" /note="similar to E. coli thymidylate kinase (AAC74182.1); Blastp hit to AAC74182.1 (213 aa), 90% identity in aa 1 - 210" /codon_start=1 /transl_table=11 /product="dTMP kinase" /protein_id="NP_460170.1" /db_xref="GI:16764555" /db_xref="GeneID:1252718" /translation="MGSNYIVIEGLEGAGKTTARDVVVETLEQLGIRNMIFTREPGGT QLAEKLRSLVLDIRSVGDEVITDKAEVLMFYAARVQLVETVIKPALAQGVWVIGDRHD LSTQAYQGGGRGIDQTMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGDLDRIE QESFDFFNRTRARYLELAAQDSRIRTIDATQPLDAVMRDIRATVTKWVQEQAA" gene 1284238..1285256 /gene="holB" /locus_tag="STM1201" /db_xref="GeneID:1252719" regulatory 1284238..1284243 /regulatory_class="ribosome_binding_site" /gene="tmk" /locus_tag="STM1200" /note="putative RBS for holB; RegulonDB:STMS1H001460" CDS 1284252..1285256 /gene="holB" /locus_tag="STM1201" /EC_number="2.7.7.7" /note="similar to E. coli DNA polymerase III, delta prime subunit (AAC74183.1); Blastp hit to AAC74183.1 (334 aa), 79% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit delta'" /protein_id="NP_460171.1" /db_xref="GI:16764556" /db_xref="GeneID:1252719" /translation="MKWYPWLRPAYEKLVESYQAGRGHHALLIQALPGMGDEALCYAL SRYLLCQQPEGHKSCGHCRGCQLMQAGTHPDYYTLTPDKGKSSLGVDAVREVSEKLYE HSRLGGAKVVWIADAALLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRCR LHHLAPPSESYAMSWLSREVTASQEALLTALRLNAGSPGAALALLQSERWAQREALCQ ALMDSLHTGDWYAVLTALNHEQAPARLHWLATLLVDALKRQHGASYLTNVDADAVVAA LAGPLSPARIQAILNDVCHCRDQLLHVTGLNRELVLTDLILRIEHYLQPGTLLPVPHL " gene 1285257..1286064 /gene="ycfH" /locus_tag="STM1202" /db_xref="GeneID:1252720" regulatory 1285257..1285262 /regulatory_class="ribosome_binding_site" /gene="ycfH" /locus_tag="STM1202" /note="putative RBS for ycfH; RegulonDB:STMS1H001462" CDS 1285267..1286064 /gene="ycfH" /locus_tag="STM1202" /note="similar to E. coli orf, hypothetical protein (AAC74184.1); Blastp hit to AAC74184.1 (265 aa), 93% identity in aa 1 - 265" /codon_start=1 /transl_table=11 /product="putative metal-dependent hydrolase" /protein_id="NP_460172.1" /db_xref="GI:16764557" /db_xref="GeneID:1252720" /translation="MFLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATTL PGYRHMRKLVGKRDNVVFSCGVHPLNQDEAYDVEELRLLAAEDDVVAMGETGLDYFYT PETKIRQQASFIHHIQIGRELHKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTED RETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKE NQPAMVRDVAEYMAVLKGVAVEELAQITTDNFARLFHIDASRLSSIR" gene 1286342..1287792 /gene="ptsG" /locus_tag="STM1203" /db_xref="GeneID:1252721" regulatory 1286342..1286347 /regulatory_class="ribosome_binding_site" /gene="ptsG" /locus_tag="STM1203" /note="putative RBS for ptsG; RegulonDB:STMS1H001463" CDS 1286359..1287792 /gene="ptsG" /locus_tag="STM1203" /EC_number="2.7.1.191" /note="PTS system; glucose-specific IIBC component (EIIBC-GLC) (glucose-permease IIBC component) (phosphotransferase enzyme II, BC component). (SW:PTGB_SALTY)" /codon_start=1 /transl_table=11 /product="PTS glucose transporter subunit IIBC" /protein_id="NP_460173.1" /db_xref="GI:16764558" /db_xref="GeneID:1252721" /translation="MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVV SHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAAVVAYGIMVKTMAVVAPLVLH LPAEEIAAKHLADTGVLGGIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLA AIFTGVVLSFVWPPIGTAIQAFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPF QMQIGEYTNAAGQVFHGDIPRYMAGDPTAGMLSGGFLFKMYGLPAAAIAIWHSAKPEN RAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDG TSFSHGLIDFIVLSGNSSKLWLFPIVGAGYAIVYYTVFRVLIKALDLKTPGREDTTDD AKAGATSEMAPALVAAFGGKENITNLDACITRLRVSVADVAKVDQAGLKKLGAAGVVV AGSGVQAIFGTKSDNLKTEMDEYIRNS" gene complement(1287877..1290063) /gene="fhuE" /locus_tag="STM1204" /db_xref="GeneID:1252722" CDS complement(1287877..1290051) /gene="fhuE" /locus_tag="STM1204" /note="Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid uptake; similar to E. coli outer membrane receptor for ferric iron uptake (AAC74186.1); Blastp hit to AAC74186.1 (729 aa), 81% identity in aa 5 - 729" /codon_start=1 /transl_table=11 /product="ferric-rhodotorulic acid/ferric-coprogen receptor FhuE" /protein_id="NP_460174.1" /db_xref="GI:16764559" /db_xref="GeneID:1252722" /translation="MSFIQYRRDKHLPSTAAPSLLAMGMAMAFMPAAFAAEDTVIVEG ETTADAVNREEQDYSMKTTAAGTKMPMTQRDIPQSVSIVSQQRMEDQQLQTLGEVMTN TLGISGSQADSDRISYYSRGFEIDNYMVDGIPTYFESRWNLGDALTDTALYERVEVVR GANGLMTGTGNPSASINMIRKHATSREFKGNVSTEYGSWNKQRYVMDLQSPLTADGNV RGRIVAGYQNNDSWLDRYNSEKAFFSGIVDADLGTTTNLSAGYEYQKIDVNSPTWGGL PRWNTDGSKNSYDRARSTAPDWAYNNKEINKFFVTLKQRFAESWQATLNATHTEVKFD SKMMYIDALVDKETGTLVSPYGASYPVVGGTGWNSGKRKVDAIDLFADGAYELFGRQH NMMFGGSYSKQNNRYFSAWANVFPDDIGNFSAFNGNFPQTHWAPQNLAQDDTTHMKSL YAATRISLADPLHLILGARYTNWRVDTLTYSMEKNHTTPYAGLIYDINDNWSAYASYT SIFQPQNKRDKAGQYLAPITGNNYEAGLKSDWMNSRLTTTLSVFRIEQNNVAQATTIP IPGSNGEFAWKSTDGTVSKGVEFEVNGAITDNWQMTFGATRYVAEDNEGNAVNPNLPR TSVKLFTRYRLPAIPELTVGGGVNWQNRVYKDTTTPYGTFRAEQGSYALVDLFTRYQV TKNFSVQGNINNLFDKTYDTNIDGSIVYGAPRNVSLTANYQF" regulatory complement(1290058..1290063) /regulatory_class="ribosome_binding_site" /gene="fhuE" /locus_tag="STM1204" /note="putative RBS for fhuE; RegulonDB:STMS1H001464" gene 1290381..1290752 /gene="ycfF" /locus_tag="STM1205" /db_xref="GeneID:1252723" regulatory 1290381..1290386 /regulatory_class="ribosome_binding_site" /gene="ycfF" /locus_tag="STM1205" /note="putative RBS for ycfF; RegulonDB:STMS1H001465" CDS 1290393..1290752 /gene="ycfF" /locus_tag="STM1205" /note="similar to E. coli orf, hypothetical protein (AAC74187.1); Blastp hit to AAC74187.1 (119 aa), 97% identity in aa 1 - 119" /codon_start=1 /transl_table=11 /product="histidine triad nucleotide-binding protein" /protein_id="NP_460175.1" /db_xref="GI:16764560" /db_xref="GeneID:1252723" /translation="MAEETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIP NILIPTVNDVTAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHM HLLGGRPLGPMLAHKGL" gene 1290742..1291129 /gene="ycfL" /locus_tag="STM1206" /db_xref="GeneID:1252724" regulatory 1290742..1290747 /regulatory_class="ribosome_binding_site" /gene="ycfF" /locus_tag="STM1205" /note="putative RBS for ycfL; RegulonDB:STMS1H001466" CDS 1290755..1291129 /gene="ycfL" /locus_tag="STM1206" /note="similar to E. coli orf, hypothetical protein (AAC74188.1); Blastp hit to AAC74188.1 (125 aa), 80% identity in aa 1 - 125" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460176.1" /db_xref="GI:16764561" /db_xref="GeneID:1252724" /translation="MIKGCIAVSLGLLLLTGCRSHPEIPVSDAQSLVMESTVLAAGVT AEPPELTASDIQPSASSRVYNERQEPITVHYRFYWYDARGLEMHPLEAPRSVTIPARS SVTLFGSANYLGAHKVRLYLYL" gene 1291128..1291781 /gene="ycfM" /locus_tag="STM1207" /db_xref="GeneID:1252725" regulatory 1291128..1291133 /regulatory_class="ribosome_binding_site" /gene="ycfM" /locus_tag="STM1207" /note="putative RBS for ycfM; RegulonDB:STMS1H001467" CDS 1291143..1291781 /gene="ycfM" /locus_tag="STM1207" /note="similar to E. coli orf, hypothetical protein (AAC74189.1); Blastp hit to AAC74189.1 (213 aa), 89% identity in aa 1 - 213" /codon_start=1 /transl_table=11 /product="penicillin-binding protein activator LpoB" /protein_id="NP_460177.1" /db_xref="GI:16764562" /db_xref="GeneID:1252725" /translation="MTKMHRYAAIAALAIFLSGCMAQRQPAPVEEVKPAPEQPAQPPQ PPVVPSVPTIPQQPGPIEHEDQTGQPAPKVRHYDWNGAMQPLVSKMLQADGVTAGSVL LVDSVNNRTNGSLNANEATETLRNALANNGKFTLVSVQQLSMAKQQLGLSPQDSLGTR SKAIGIARNVGAQYVLYSSASGNVNAPALQMQLMLVQTGEIIWSGKGAVQQQ" gene 1291753..1292586 /gene="ycfN" /locus_tag="STM1208" /db_xref="GeneID:1252726" regulatory 1291753..1291758 /regulatory_class="ribosome_binding_site" /gene="ycfM" /locus_tag="STM1207" /note="putative RBS for ycfN; RegulonDB:STMS1H001468" CDS 1291762..1292586 /gene="ycfN" /locus_tag="STM1208" /note="similar to E. coli putative beta-glucosidase (AAC74190.1); Blastp hit to AAC74190.1 (274 aa), 67% identity in aa 5 - 273" /codon_start=1 /transl_table=11 /product="thiamine kinase" /protein_id="NP_460178.1" /db_xref="GI:16764563" /db_xref="GeneID:1252726" /translation="MRSNNNNPLTRDEILSRYFPQYRPAVATSQGLSGGSCIIAHDTH RVVLRRHHDPDAPPAHFLRHYRALSQLPASLAPRALFYTPGWMAVEYLHGVVNSALPD ADELAALLYHLHQQPRFGWRIALSPLLAQYWSCCDPARRTPFWLRRLKQLQKNGEPRP LRLAPLHMDVHGDNIVLTSAGLRLIDWEYAGDGDIALELAAVWVEDERQHRQLADAYA ARARIDARQLWRQIRLWHPWVIMLKAGWFEYRWRQTGEQQFIRLADETWRQLRMKG" gene 1292585..1293622 /gene="nagZ" /locus_tag="STM1209" /db_xref="GeneID:1252727" regulatory 1292585..1292590 /regulatory_class="ribosome_binding_site" /gene="nagZ" /locus_tag="STM1209" /note="putative RBS for nagZ; RegulonDB:STMS1H001469" CDS 1292597..1293622 /gene="nagZ" /locus_tag="STM1209" /note="similar to E. coli orf, hypothetical protein (AAC74191.1); Blastp hit to AAC74191.1 (341 aa), 91% identity in aa 1 - 341" /codon_start=1 /transl_table=11 /product="beta-N-acetylhexosaminidase" /protein_id="NP_460179.1" /db_xref="GI:16764564" /db_xref="GeneID:1252727" /translation="MGPVMLNVEGCELDAEEREILAHPLVGGLILFTRNYHDPEQLRE LVRQIRAASRNHLVVAVDQEGGRVQRFREGFTRLPAAQSFFALHGLEEGGRLAQEAGW LMASEMIAMDIDISFAPVLDVGHISAAIGERSYHADPAKALAMATRFIDGMHDAGMKT TGKHFPGHGAVTADSHKETPCDPRPETDIRGKDMSVFRTLISENKLDAIMPAHVIYRA IDPRPASGSPYWLKTVLRQELGFDGVIFSDDLSMEGAAIMGSYAERAQASLDAGCDMI LVCNNRKGAVSVLDNLSPIKAERVTRLYHKGSFSRRELMDSARWKTASAQLNQLHERW QEEKAGH" gene 1293636..1294189 /gene="ycfP" /locus_tag="STM1210" /db_xref="GeneID:1252728" regulatory 1293636..1293641 /regulatory_class="ribosome_binding_site" /gene="ycfP" /locus_tag="STM1210" /note="putative RBS for ycfP; RegulonDB:STMS1H001470" CDS 1293647..1294189 /gene="ycfP" /locus_tag="STM1210" /note="similar to E. coli orf, hypothetical protein (AAC74192.1); Blastp hit to AAC74192.1 (199 aa), 94% identity in aa 20 - 199" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460180.1" /db_xref="GI:16764565" /db_xref="GeneID:1252728" /translation="MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLVSYSTRHPKHDMQ HLLKEVDKMLQLNVDERPLICGVGLGGYWAERIGFLCDIRQVVFNPNLFPYENMEGKI DRPEEYADIATKCVTNFREKNRDRCLVILSRHDEALDSQRSAQALHPFYEIVWDEEQT HKFKNISPHLQRIKAFKTLG" protein_bind 1294244..1294266 /note="putative binding site for FNR, RegulonDB: STMS1H000174" /bound_moiety="FNR" protein_bind 1294292..1294316 /note="putative binding site for FNR, RegulonDB: STMS1H000152" /bound_moiety="FNR" gene 1294327..1295748 /gene="ndh" /locus_tag="STM1211" /db_xref="GeneID:1252729" regulatory 1294327..1294335 /regulatory_class="minus_35_signal" /gene="ndh" /locus_tag="STM1211" /note="putative -35_signal for ndh; RegulonDB:STMLTH004478" regulatory 1294354..1294362 /regulatory_class="minus_10_signal" /gene="ndh" /locus_tag="STM1211" /note="putative -10_signal for ndh; RegulonDB:STMLTH004478" regulatory 1294432..1294437 /regulatory_class="ribosome_binding_site" /gene="ndh" /locus_tag="STM1211" /note="putative RBS for ndh; RegulonDB:STMS1H001471" CDS 1294444..1295748 /gene="ndh" /locus_tag="STM1211" /EC_number="1.6.99.3" /EC_number="1.6.5.3" /EC_number="1.16.1.-" /note="similar to E. coli respiratory NADH dehydrogenase (AAC74193.1); Blastp hit to AAC74193.1 (434 aa), 97% identity in aa 1 - 434" /codon_start=1 /transl_table=11 /product="FAD-dependent oxidoreductase" /protein_id="NP_460181.1" /db_xref="GI:16764566" /db_xref="GeneID:1252729" /translation="MTTPLKKIVIVGGGAGGLEMATQLGHKLGRKKKAKITLVDRNHS HLWKPLLHEVATGSLDEGVDALSYLAHARNHGFQFQLGSVMDIDREAKTITIAELRDE KGELLVPERKIAYDTLVMALGSTSNDFNTPGVKEHCIFLDNPHQARRFHQEMLNLFLK YSANLGANGKVNIAIVGGGATGVELSAELHNAVKQLHSYGYKGLTNDALNVTLVEAGE RILPALPPRISSAAHNELTKLGVRVLTQTMVTSADEGGLHTKEGEYIQADLMVWAAGI KAPDFMKEIGGLETNRINQLVVEPTLQTTRDPDIYAIGDCASCARPEGGFVPPRAQAA HQMATCAMKNILAQMNGKPLKAYQYKDHGSLVSLSNFSTVGSLMGNLTRGSMMIEGRI ARFVYISLYRMHQIALHGYFKTGLMMLVGSINRVIRPRLKLH" gene 1295913..1296466 /gene="ycfJ" /locus_tag="STM1212" /db_xref="GeneID:1252730" regulatory 1295913..1295918 /regulatory_class="ribosome_binding_site" /gene="ycfJ" /locus_tag="STM1212" /note="putative RBS for ycfJ; RegulonDB:STMS1H001472" CDS 1295927..1296466 /gene="ycfJ" /locus_tag="STM1212" /note="similar to E. coli orf, hypothetical protein (AAC74194.1); Blastp hit to AAC74194.1 (179 aa), 94% identity in aa 1 - 178" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460182.1" /db_xref="GI:16764567" /db_xref="GeneID:1252730" /translation="MNKSMLAGIGIGVAAALGVAAVASLNVFDRGPQYAQVISAKPIK ETVKTPRQECRNVTVTHRRPVQDENRIAGSVLGAVAGGVIGHQFGGGRGKDVATVVGA LGGGYAGNQIQGSMQESDTYTTTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDKD PGTQIPLDGNGQLVLNNKA" gene complement(1296541..1297192) /gene="ycfQ" /locus_tag="STM1213" /db_xref="GeneID:1252731" CDS complement(1296541..1297176) /gene="ycfQ" /locus_tag="STM1213" /note="similar to E. coli orf, hypothetical protein (AAC74195.1); Blastp hit to AAC74195.1 (236 aa), 80% identity in aa 27 - 236" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="NP_460183.1" /db_xref="GI:16764568" /db_xref="GeneID:1252731" /translation="MTTDTTSCAKKSRGRPKVFDREAALDKAMTLFWQHGYEATSLAD LVEATGAKAPTLYAEFTNKKGLFRAVLDRYITRFASKHEAQLFCEEKSVESALEDYFT EIAACFTSTDTPAGCFMINTSATLAASSRDIARTVKSRHAMQEQTLIQFLRQRQERGE IPAHCNPQALAEYINCILQGMSISAREGATFEQLMQITRTTLRIWPELIKS" regulatory complement(1297187..1297192) /regulatory_class="ribosome_binding_site" /gene="ycfQ" /locus_tag="STM1213" /note="putative RBS for ycfQ; RegulonDB:STMS1H001473" gene 1297406..1297675 /gene="ycfR" /locus_tag="STM1214" /db_xref="GeneID:1252732" regulatory 1297406..1297411 /regulatory_class="ribosome_binding_site" /gene="ycfR" /locus_tag="STM1214" /note="putative RBS for ycfR; RegulonDB:STMS1H001474" CDS 1297418..1297675 /gene="ycfR" /locus_tag="STM1214" /note="similar to E. coli orf, hypothetical protein (AAC74196.1); Blastp hit to AAC74196.1 (85 aa), 91% identity in aa 1 - 85" /codon_start=1 /transl_table=11 /product="multiple stress resistance protein BhsA" /protein_id="NP_460184.1" /db_xref="GI:16764569" /db_xref="GeneID:1252732" /translation="MKNVKTLIAAAVLSSLSFASFAAVEVQATPEGQQKFGTISANGG TNLGSLEDQLAQKAQEMGAKSFRITSVTGPNTLHGTAVIYK" gene complement(1297772..1298751) /gene="ycfS" /locus_tag="STM1215" /db_xref="GeneID:1252733" CDS complement(1297772..1298737) /gene="ycfS" /locus_tag="STM1215" /note="similar to E. coli orf, hypothetical protein (AAC74197.1); Blastp hit to AAC74197.1 (320 aa), 84% identity in aa 1 - 320" /codon_start=1 /transl_table=11 /product="L,D-transpeptidase" /protein_id="NP_460185.1" /db_xref="GI:16764570" /db_xref="GeneID:1252733" /translation="MFNNTRLSRWWALLALTATIMLALPAQANTWPLPPPGSRLVGEN KFHVVEDDGGSLEAIAKKYNVGFLALLQANPGIDPYVPRAGSVLTIPLQTLLPDAPRE GIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTPTAN IRARYKAQGIDLPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCI RLRDGDIETLFRQVTPGTKVNIINTPIKASVEPGGVRLVEVHQPLSKNIGDDPQVLPI VLNGPMQAFKDAPQTDAAVMEHVMEVRSGMPVDVTRQAEAKPQSL" regulatory complement(1298746..1298751) /regulatory_class="ribosome_binding_site" /gene="ycfS" /locus_tag="STM1215" /note="putative RBS for ycfS; RegulonDB:STMS1H001475" gene complement(1298885..1302349) /gene="mfd" /locus_tag="STM1216" /db_xref="GeneID:1252734" CDS complement(1298885..1302331) /gene="mfd" /locus_tag="STM1216" /note="similar to E. coli transcription-repair coupling factor; mutation frequency decline (AAC74198.1); Blastp hit to AAC74198.1 (1148 aa), 95% identity in aa 1 - 1148" /codon_start=1 /transl_table=11 /product="transcription-repair coupling factor" /protein_id="NP_460186.1" /db_xref="GI:16764571" /db_xref="GeneID:1252734" /translation="MPEKQRYTLPTKAGDQRQLGELTGAACATLVAEIAERHAGPVVL IAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQ RGVLIVPVNTLMQRVCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHG EYATRGALLDLFPMGSEQPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFP TDKAAIELFRSQWRDTFEVKRDAEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF PANTLVVNTGSLETSAERFQADTLARFENRGVDPMRPLLPPEALWLRVDELFSELKRW PRLQLKTDHLPEKAANTNLGFQKLPDLAIQAQQKAPLDALRKFLESFSGPVIFSVESE GRREALGELLARIKIAPKRILRLDEAQDAGRYLMIGAAEHGFIDTQRNLALICESDLL GERVARRRLDSRRTINPDTLIRNLAELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEY LMLTYANDAKLYVPVSSLHLISRYAGGAEESAPLHKLGGDAWSRARQKAAEKVRDVAA ELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDR LVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEM LSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLIVDEEHRFGVRHKE RIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVV REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL LTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI ASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGGTIE FAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQQLEENA IA" regulatory complement(1302344..1302349) /regulatory_class="ribosome_binding_site" /gene="mfd" /locus_tag="STM1216" /note="putative RBS for mfd; RegulonDB:STMS1H001476" gene 1302558..1303868 /gene="ycfU" /locus_tag="STM1217" /db_xref="GeneID:1252735" CDS 1302558..1303868 /gene="ycfU" /locus_tag="STM1217" /note="similar to E. coli orf, hypothetical protein (AAC74200.1); Blastp hit to AAC74200.1 (399 aa), 93% identity in aa 1 - 399" /codon_start=1 /transl_table=11 /product="integral membrane protein ABC transporter" /protein_id="NP_460187.3" /db_xref="GI:1109557614" /db_xref="GeneID:1252735" /translation="MSAFFRITLTNSYGSDIYAFRFRLYTRDFANSNQTDYMYQPVAL FIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNILGLMPQ AILSAEHGSLNPNQMPEKAVNLQGVNRIAPLTTGDVVLQSARSVAVGVMLGIDPAQKD PLTPYLVNVKQSELQPGKYNVILGEQLAGQLGVNRGDQIRLMVPSASQFTPMGRLPSQ RLFTVIGTFAANSEVDGYEMLVNIQDASRLMRYPAGNITGWRLWLDEPLQVDTLSQQT LPQGTKWQDWRERKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEV AILQTQGLTPRQIMMVFMVQGASAGIIGALLGAALGALLASQLNNLMPIIGAFLDGAA LPVAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQPAEALRYE" gene 1303848..1304562 /gene="ycfV" /locus_tag="STM1218" /db_xref="GeneID:1252736" regulatory 1303848..1303853 /regulatory_class="ribosome_binding_site" /gene="ycfV" /locus_tag="STM1218" /note="putative RBS for ycfV; RegulonDB:STMS1H001477" CDS 1303861..1304562 /gene="ycfV" /locus_tag="STM1218" /note="similar to E. coli putative ATP-binding component of a transport system (AAC74201.1); Blastp hit to AAC74201.1 (228 aa), 94% identity in aa 1 - 228" /codon_start=1 /transl_table=11 /product="lipoprotein ABC transporter ATP-binding protein LolD" /protein_id="NP_460188.1" /db_xref="GI:16764573" /db_xref="GeneID:1252736" /translation="MNKILLQCDNLCKRYQEGTVQTDVLHDVSFSIGEGEMMAIVGSS GSGKSTLLHLLGGLDTPTSGDVIFSGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF TALENVAMPLLIGKKKPAEIDARAREMLHAVGLEHRATHRPSELSGGERQRVAIARAL VNNPRLVLADEPTGNLDARNADSIFELLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM RDGRLTAELSLMGAE" gene 1304548..1305806 /gene="ycfW" /locus_tag="STM1219" /db_xref="GeneID:1252737" regulatory 1304548..1304553 /regulatory_class="ribosome_binding_site" /gene="ycfV" /locus_tag="STM1218" /note="putative RBS for ycfW; RegulonDB:STMS1H001478" CDS 1304562..1305806 /gene="ycfW" /locus_tag="STM1219" /note="similar to E. coli putative kinase (AAC74202.1); Blastp hit to AAC74202.1 (414 aa), 92% identity in aa 1 - 414" /codon_start=1 /transl_table=11 /product="lipoprotein transporter subunit LolE" /protein_id="NP_460189.1" /db_xref="GI:16764574" /db_xref="GeneID:1252737" /translation="MASPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVG LSAMNGFERELNNRILAVVPHGEIEAVNQPWTNWREALAKVQKVPGIAAAAPYINFTG LVESGANLRAIQVKGVDPKQEQQLSALPSFVQNHAWDHFKAGEQQIIIGKGVADALNV KQGDWVSIMIPNANADHKLLQPKRVRLHVIGILQLSGQLDHSFAMIPLEDAQQYLDMG SSVSGIALKVHDVFNANKLVRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAM ILVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLLGSLIG VAIGVVVSLQLTAIINGIEKAIGHQFLSGDIYFIDFLPSELHWLDVVYVLVTALLLSL LASWYPARRASNIDPARVLSGQ" gene 1305824..1306746 /gene="ycfX" /locus_tag="STM1220" /db_xref="GeneID:1252738" regulatory 1305824..1305829 /regulatory_class="ribosome_binding_site" /gene="ycfX" /locus_tag="STM1220" /note="putative RBS for ycfX; RegulonDB:STMS1H001479" CDS 1305835..1306746 /gene="ycfX" /locus_tag="STM1220" /note="similar to E. coli putative NAGC-like transcriptional regulator (AAC74203.1); Blastp hit to AAC74203.1 (303 aa), 92% identity in aa 1 - 303" /codon_start=1 /transl_table=11 /product="N-acetylglucosamine kinase" /protein_id="NP_460190.1" /db_xref="GI:16764575" /db_xref="GeneID:1252738" /translation="MYYGFDIGGTKIALGVFDSTRRLQWEKRVPTPHTSYSAFLDAVC ELVEEADQRFGVKGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRL DNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLVLNGKPITGQSYITGEFGHMRL PVDALTLMGFDFPLRRCGCGQMGCIENYLSGRGFAWLYQHYYDQSLQAPEIIALWEQG DEQAHAHVERYLDLLAVCLGNILTIVDPDLLVIGGGLSNFTAITTQLAERLPRHLLPV ARAPRIERARHGDAGGMRGAAFLHLTD" gene 1306756..1307586 /gene="cobB" /locus_tag="STM1221" /db_xref="GeneID:1252739" regulatory 1306756..1306761 /regulatory_class="ribosome_binding_site" /gene="cobB" /locus_tag="STM1221" /note="putative RBS for cobB; RegulonDB:STMS1H001480" CDS 1306765..1307586 /gene="cobB" /locus_tag="STM1221" /note="homolog of virulence factor; similar to E. coli putative nicotinic acid mononucleotide:5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase (AAC74204.1); Blastp hit to AAC74204.1 (279 aa), 91% identity in aa 1 - 273" /codon_start=1 /transl_table=11 /product="NAD-dependent protein deacylase" /protein_id="NP_460191.1" /db_xref="GI:16764576" /db_xref="GeneID:1252739" /translation="MQSRRFHRLSRFRKNKRLLRERLRQRIFFRDRVVPEMMENPRVL VLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFARNPGLVQTFYNARRQQLQQP EIQPNAAHLALAKLEEALGDRFLLVTQNIDNLHERAGNRNIIHMHGELLKVRCSQSGQ ILEWNGDVMPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGH VYPAAGFVHEAKLHGAHTVELNLEPSQVGSEFEEKHYGPASQVVPEFVDKFLKGL" gene complement(1307668..1308727) /gene="potD" /locus_tag="STM1222" /db_xref="GeneID:1252740" CDS complement(1307668..1308714) /gene="potD" /locus_tag="STM1222" /note="ABC superfamily (peri_perm); spermidine/putrescine-binding periplasmic protein SPBP. (SW:POTD_SALTY)" /codon_start=1 /transl_table=11 /product="spermidine/putrescine ABC transporter substrate-binding protein PotD" /protein_id="NP_460192.1" /db_xref="GI:16764577" /db_xref="GeneID:1252740" /translation="MKKWSRHLLAAGALALGMSAAHASDNDTLYFYNWTEYVPPGLLE QFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKS KLTNFHNLDPEMLNKPFDPNNDYSVPYIWGATAIGVNSDAIDPKTITSWADLWKPEYK NSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYEELKKLMPNVAAFNSDNPANPY MEGEVNLGMVWNGSAFVARQAGTPLEVVWPKEGGIFWMDSLAIPANAKNKEGALKLIN FLLRPDVAKEVAETIGYPTPNLAARKLLSPEVANDKSLYPDAQTISKGEWQNDVGDAS AIYEEYYQKLKAGR" regulatory complement(1308722..1308727) /regulatory_class="ribosome_binding_site" /gene="potD" /locus_tag="STM1222" /note="putative RBS for potD; RegulonDB:STMS1H001481" gene complement(1308739..1309532) /gene="potC" /locus_tag="STM1223" /db_xref="GeneID:1252741" CDS complement(1308739..1309518) /gene="potC" /locus_tag="STM1223" /note="ABC superfamily (membrane); similar to E. coli spermidine/putrescine transport system permease (AAC74208.1); Blastp hit to AAC74208.1 (264 aa), 96% identity in aa 1 - 258" /codon_start=1 /transl_table=11 /product="spermidine/putrescine ABC transporter permease PotC" /protein_id="NP_460193.1" /db_xref="GI:16764578" /db_xref="GeneID:1252741" /translation="MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTT KWYELLVNNDSLLQAAQHSLTMAIFSATFATLIGSLTAVALYRYRFRGKPFVSGMLFV VMMSPDIVMAISLLVLFMLLGIQLGFWSLLFSHITFSLPFVVVTVYSRLKGFDVRMLE AAKDLGASEVTILRKIILPLAMPAVAAGWLLSFTLSMDDVVVSSFVTGPGYEILPLKI YSMVKVGVSPEVNALATVLLVLSLVMVIASQLIARDKTKGR" regulatory complement(1309527..1309532) /regulatory_class="ribosome_binding_site" /gene="potC" /locus_tag="STM1223" /note="putative RBS for potC; RegulonDB:STMS1H001482" gene complement(1309834..1310844) /gene="sifA" /locus_tag="STM1224" /db_xref="GeneID:1252742" CDS complement(1309834..1310844) /gene="sifA" /locus_tag="STM1224" /note="replication in macrophages; SIFA protein (SW:SIFA_SALTY)" /codon_start=1 /transl_table=11 /product="effector protein SifA" /protein_id="NP_460194.1" /db_xref="GI:16764579" /db_xref="GeneID:1252742" /translation="MPITIGNGFLKSEILTNSPRNTKEAWWKVLWEKIKDFFFSTGKA KADRCLHEMLFAERAPTRERLTEIFFELKELACASQRDRFQVHNPHENDATIILRIMD QNEENELLRITQNTDTFSCEVMGNLYFLMKDRPDILKSHPQMTAMIKRRYSEIVDYPL PSTLCLNPAGAPILSVPLDNIEGYLYTELRKGHLDGWKAQEKATYLAAKIQSGIEKTT RILHHANISESTQQNAFLETMAMCGLKQLEIPPPHTHIPIEKMVKEVLLADKTFQAFL VTDPSTSQSMLAEIVEAISDQVFHAIFRIDPQAIQKMAEEQLTTLHVRSEQQSGCLCC FL" gene complement(1311173..1312052) /gene="potB" /locus_tag="STM1225" /db_xref="GeneID:1252743" CDS complement(1311173..1312036) /gene="potB" /locus_tag="STM1225" /note="ABC superfamily (membrane); similar to E. coli spermidine/putrescine transport system permease (AAC74209.1); Blastp hit to AAC74209.1 (275 aa), 97% identity in aa 1 - 272" /codon_start=1 /transl_table=11 /product="spermidine/putrescine ABC transporter permease PotB" /protein_id="NP_460195.1" /db_xref="GI:16764580" /db_xref="GeneID:1252743" /translation="MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFV KMVFTLDNYARLLDPLYFEVLLHSLNMALIATLSCLVLGYPFAWFLAKLPEKIRPLLL FLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYI LLPFMVMPLYSSIEKLDKPLLEAARDLGASKMQTFIRIIIPLTMPGIVAGCLLVMLPA MGLFYVSDLMGGAKNLLIGNVIKVQFLNIRDWPFGAATSITLTIVMGLMLLIYWRASR LLNKKVSDISD" gene complement(1312020..1313156) /gene="potA" /locus_tag="STM1226" /db_xref="GeneID:1252744" CDS complement(1312020..1313156) /gene="potA" /locus_tag="STM1226" /note="ABC superfamily (atp_bind); similar to E. coli ATP-binding component of spermidine/putrescine transport (AAC74210.1); Blastp hit to AAC74210.1 (378 aa), 94% identity in aa 1 - 378" /codon_start=1 /transl_table=11 /product="spermidine/putrescine transporter" /protein_id="NP_460196.1" /db_xref="GI:16764581" /db_xref="GeneID:1252744" /translation="MGQSKKLNNQPRSLSPLVLLSGISKSFDGKEVISQLDLTINNGE FLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTVFQSYALFP HMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIAR AVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI VVMRNGVIEQDGTPREIYEEPKNLFVAGFIGEINRFDATVIERLDEQRVRASVEGREC NIYVNFAVEPGQKLNVLLRPEDLRVEEINDDNHIEGLIGYVRERNYKGMTLESVVELE NGKMVMVSEFFNEDDPDFDHSLDQKMAISWVESWEVVLADEEHK" regulatory complement(1312047..1312052) /regulatory_class="ribosome_binding_site" /gene="potB" /locus_tag="STM1225" /note="putative RBS for potB; RegulonDB:STMS1H001483" gene 1313395..1314636 /gene="pepT" /locus_tag="STM1227" /db_xref="GeneID:1252745" regulatory 1313395..1313400 /regulatory_class="ribosome_binding_site" /gene="pepT" /locus_tag="STM1227" /note="putative RBS for pepT; RegulonDB:STMS1H001484" CDS 1313407..1314636 /gene="pepT" /locus_tag="STM1227" /EC_number="3.4.11.-" /note="peptidase T (SW:PEPT_SALTY); putative peptidase T" /codon_start=1 /transl_table=11 /product="aminotripeptidase" /protein_id="NP_460197.1" /db_xref="GI:16764582" /db_xref="GeneID:1252745" /translation="MDKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEE MGLVNITLSEKGTLMATLPANVEGDIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGD IALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGVAEIMTALAVLKGNPI PHGDIKVAFTPDEEVGKGAKHFDVEAFGAQWAYTVDGGGVGELEFENFNAASVNIKIV GNNVHPGTAKGVMVNALSLAARIHAEVPADEAPETTEGYEGFYHLASMKGTVDRAEMH YIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILD IAQQAMRDCHITPEMKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEK AVQVIVRIAELTAKRGQ" gene 1314636..1315974 /locus_tag="STM1228" /db_xref="GeneID:1252746" regulatory 1314636..1314641 /regulatory_class="ribosome_binding_site" /locus_tag="STM1228" /note="putative RBS for STM1228; RegulonDB:STMS1H001485" CDS 1314640..1315974 /locus_tag="STM1228" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460198.1" /db_xref="GI:16764583" /db_xref="GeneID:1252746" /translation="MLRIVVKRFIIYGGIFSAINFSAWSAEYTPSWSQRQQQSAACFM TGDETCMTFIDDAVRLASQQYGKRSIQLVRSLLLQSDIYQWLGKPELTPQMLLRARAI MKTFPADTYPGDRADMFEHLAAFNVYSDDRYIEYSPTEQWRYEIKVDYRQQIAWQEQA LTWRLKDKKASTEALVYTLNRMRDAYSDALEERDVECDSARKAYYLAKIDATERQWLS VILRDKTWDNRERVASFLQQKADIAYNAGHISEAINALSQALKIEQTLYGAEFGEMTV DSNNLAGFYAQGHHYKEAKDLYLKLIAYYQSRLTPMATVISRLRFYLPENIDLDSTSL YLPLLAEYKRRQSDVSMVLYGISLLYQSNQELEQAKDFAERAFTLDAVAYPAKMQYER LQQLANIAEGLGDNVLARRYRQMSFRHRMAHSIYPGDPQYNDVAKPGGDRCG" gene complement(1316014..1317148) /gene="ycfD" /locus_tag="STM1229" /db_xref="GeneID:1252747" CDS complement(1316014..1317135) /gene="ycfD" /locus_tag="STM1229" /note="similar to E. coli orf, hypothetical protein (AAC74212.1); Blastp hit to AAC74212.1 (376 aa), 93% identity in aa 4 - 376" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L16 arginine hydroxylase" /protein_id="NP_460199.1" /db_xref="GI:16764584" /db_xref="GeneID:1252747" /translation="MEYQLTLNWPDFLERHWQKRPVVLKRGFSNFIDPLSPDELAGLA MESEIDSRLVSHQDGKWQVSHGPFESYDHLGESNWSLLVQAVNHWHEPTAALMRPFRA LPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMRQHCPHPDLL QVEPFEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNSRELISGFADYV LQRELGNTYYSDPDMPSRKHPADILPQEMDKLRNMMLDLINQPAHFQQWLGEFLSQSR HELDIAPPEPPYQPDEIYDALKQGEVLVRLGGLRVLRIGDEVYANGEKIDSPHRPALE ALASHIALTAENFGDALEDPSFLAMLAALVNSGYWFFEG" regulatory complement(1317143..1317148) /regulatory_class="ribosome_binding_site" /gene="ycfD" /locus_tag="STM1229" /note="putative RBS for ycfD; RegulonDB:STMS1H001486" gene complement(1317216..1318679) /gene="phoQ" /locus_tag="STM1230" /db_xref="GeneID:1252748" CDS complement(1317216..1318679) /gene="phoQ" /locus_tag="STM1230" /EC_number="2.7.3.-" /note="ligand is Mg+; virulence sensor protein PHOQ (SW:PHOQ_SALTY)" /codon_start=1 /transl_table=11 /product="sensor protein PhoQ" /protein_id="NP_460200.1" /db_xref="GI:16764585" /db_xref="GeneID:1252748" /translation="MNKFARHFLPLSLRVRFLLATAGVVLVLSLAYGIVALVGYSVSF DKTTFRLLRGESNLFYTLAKWENNKISVELPENLDMQSPTMTLIYDETGKLLWTQRNI PWLIKSIQPEWLKTNGFHEIETNVDATSTLLSEDHSAQEKLKEVREDDDDAEMTHSVA VNIYPATARMPQLTIVVVDTIPIELKRSYMVWSWFVYVLAANLLLVIPLLWIAAWWSL RPIEALAREVRELEDHHREMLNPETTRELTSLVRNLNQLLKSERERYNKYRTTLTDLT HSLKTPLAVLQSTLRSLRNEKMSVSKAEPVMLEQISRISQQIGYYLHRASMRGSGVLL SRELHPVAPLLDNLISALNKVYQRKGVNISMDISPEISFVGEQNDFVEVMGNVLDNAC KYCLEFVEISARQTDDHLHIFVEDDGPGIPHSKRSLVFDRGQRADTLRPGQGVGLAVA REITEQYAGQIIASDSLLGGARMEVVFGRQHPTQKEE" gene complement(1318679..1319365) /gene="phoP" /locus_tag="STM1231" /db_xref="GeneID:1252749" CDS complement(1318679..1319353) /gene="phoP" /locus_tag="STM1231" /note="transcribes genes expressed under low Mg+ concentration (OmpR family); virulence transcriptional regulatory protein PHOP. (SW:PHOP_SALTY)" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with PhoQ" /protein_id="NP_460201.1" /db_xref="GI:16764586" /db_xref="GeneID:1252749" /translation="MMRVLVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEH LPDIAIVDLGLPDEDGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTK PFHIEEVMARMQALMRRNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIME TLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQG YLFELR" regulatory complement(1319360..1319365) /regulatory_class="ribosome_binding_site" /gene="phoP" /locus_tag="STM1231" /note="putative RBS for phoP; RegulonDB:STMS1H001487" gene complement(1319477..1320862) /gene="purB" /locus_tag="STM1232" /db_xref="GeneID:1252750" CDS complement(1319477..1320847) /gene="purB" /locus_tag="STM1232" /EC_number="4.3.2.2" /note="similar to E. coli adenylosuccinate lyase (AAC74215.1); Blastp hit to AAC74215.1 (456 aa), 94% identity in aa 1 - 456" /codon_start=1 /transl_table=11 /product="adenylosuccinate lyase" /protein_id="NP_460202.1" /db_xref="GI:16764587" /db_xref="GeneID:1252750" /translation="MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWL QKLAAHAAIKEVPAFAADANGYLDTLVANFNEEDAARIKTIERTTNHDVKAVEYFLKE KVAAIPALHDVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQVINAVKDLATQ YRDIPLLSRTHGQPATPSTLGKEMANVAYRMERQFRQLNQVEILGKINGAVGNYNAHI AAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCIARFNTILIDFDRDVW GYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLHHLANKLPVSRWQ RDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTV MRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDSLALPEAEKTRLKAMTPANYIGRAVT LVDELK" gene complement(1320851..1321550) /gene="ycfC" /locus_tag="STM1233" /db_xref="GeneID:1252751" CDS complement(1320851..1321498) /gene="ycfC" /locus_tag="STM1233" /note="similar to E. coli orf, hypothetical protein (AAC74216.1); Blastp hit to AAC74216.1 (213 aa), 94% identity in aa 1 - 213" /codon_start=1 /transl_table=11 /product="unknown membrane associated protein" /protein_id="NP_460203.1" /db_xref="GI:16764588" /db_xref="GeneID:1252751" /translation="MIVAKNYYDITLALSGICQSARLVQQLAHQGHCDADALHVSLNS VIDMNPSSTLGVFGGSEANLRLGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLS SAKGALNTLGDRINGLQRQLDHFDLQSDTLMSAMAGIYVDVISPLGPRIQVTGSPAVL QSPQVQAKVRASLLAGIRAAVLWHQVGGGRLQLMFSRHRLTTQAKQILAHLTPEL" regulatory complement(1320857..1320862) /regulatory_class="ribosome_binding_site" /gene="ycfC" /locus_tag="STM1233" /note="putative RBS for purB; RegulonDB:STMS1H001488" regulatory complement(1321502..1321507) /regulatory_class="ribosome_binding_site" /gene="ycfC" /locus_tag="STM1233" /note="putative RBS for ycfC; RegulonDB:STMS1H001489" regulatory complement(1321524..1321532) /regulatory_class="minus_10_signal" /gene="ycfC" /locus_tag="STM1233" /note="putative -10_signal for ycfC; RegulonDB:STMLTH004479" regulatory complement(1321542..1321550) /regulatory_class="minus_35_signal" /gene="ycfC" /locus_tag="STM1233" /note="putative -35_signal for ycfC; RegulonDB:STMLTH004479" gene complement(1321579..1322739) /gene="trmU" /locus_tag="STM1234" /db_xref="GeneID:1252752" CDS complement(1321579..1322730) /gene="trmU" /locus_tag="STM1234" /EC_number="2.1.1.61" /note="similar to E. coli orf, hypothetical protein (AAC74217.1); Blastp hit to AAC74217.1 (383 aa), 94% identity in aa 1 - 383" /codon_start=1 /transl_table=11 /product="tRNA 2-thiouridine(34) synthase MnmA" /protein_id="NP_460204.3" /db_xref="GI:1109557615" /db_xref="GeneID:1252752" /translation="MIEYAALKFNVASIPMSESPKKVIVGMSGGVDSSVSAWLLQQQG YQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFL EEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVNGKSRLLRGL DGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGE RKFRDFLGRYLPAQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYV VDKDVENNVLIVAQGHEHPRLMSVGLIAQQLHWVDREPFTGTLRCTVKTRYRQTDIPC TINALNDDRIEVIFDEPVAAVTPGQSAVFYSGEVCLGGGIIEQRLPLTV" regulatory complement(1322734..1322739) /regulatory_class="ribosome_binding_site" /gene="trmU" /locus_tag="STM1234" /note="putative RBS for trmU; RegulonDB:STMS1H001490" gene complement(1322739..1323210) /gene="ymfB" /locus_tag="STM1235" /db_xref="GeneID:1252753" CDS complement(1322739..1323200) /gene="ymfB" /locus_tag="STM1235" /note="similar to E. coli putative phosphohydrolase (AAC74218.1); Blastp hit to AAC74218.1 (153 aa), 84% identity in aa 1 - 152" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase" /protein_id="NP_460205.1" /db_xref="GI:16764590" /db_xref="GeneID:1252753" /translation="MFKPHVTVACIVHAEDKFLVVEETINGKSLWNQPAGHLEADETL AQAAARELWEETGITAQPQYFIRMHQWIAPDKTPFLRFLFAIKLDHICATDPHDNDID CCRWVSADEILNAPNLRSPLVAESVRSYQTGQRYPLSIVGEFNWPFTEGVK" regulatory complement(1323205..1323210) /regulatory_class="ribosome_binding_site" /gene="ymfB" /locus_tag="STM1235" /note="putative RBS for ymfB; RegulonDB:STMS1H001491" gene complement(1323212..1323549) /locus_tag="STM1236" /db_xref="GeneID:1252754" CDS complement(1323212..1323541) /locus_tag="STM1236" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460206.1" /db_xref="GI:16764591" /db_xref="GeneID:1252754" /translation="MKRLLIAFALLTPLSVNAASFDCQKAQAADEKAICAHLTLNDKD VEMHTKYQFLKGLFAMGSRGALQDAQQSWLKQRQQCKADVTCLTKAYNERLKQLDVIY DHIDKPL" gene complement(1323538..1324203) /gene="ymfC" /locus_tag="STM1237" /db_xref="GeneID:1252755" CDS complement(1323538..1324203) /gene="ymfC" /locus_tag="STM1237" /note="similar to E. coli orf, hypothetical protein (AAC74219.1); Blastp hit to AAC74219.1 (207 aa), 83% identity in aa 1 - 205" /codon_start=1 /transl_table=11 /product="23S rRNA pseudouridine synthase E" /protein_id="NP_460207.1" /db_xref="GI:16764592" /db_xref="GeneID:1252755" /translation="MRQLISSENTMQKTSFRNHYVKRFSSRQASKSRKENQPKRVVLF NKPYDVLPQFTDEAGRRTLKDFIPVQGVYAAGRLDRDSEGLLVLTNDGALQARLTQPG KRTGKIYYVQVEGIPDNAALQALRTGVTLNDGPTLPAGIEIVAEPDWLWPRTPPIRER KNIPTSWLKVTLYEGRNRQVRRMTAHVGHPTLRLIRYSMGDYTLNGLDNGQWREIAQE KDR" regulatory complement(1323544..1323549) /regulatory_class="ribosome_binding_site" /locus_tag="STM1236" /note="putative RBS for STM1236; RegulonDB:STMS1H001492" protein_bind 1324130..1324144 /note="putative binding site for FruR, RegulonDB: STMS1H000184" /bound_moiety="FruR" gene 1324219..1325625 /gene="icdA" /locus_tag="STM1238" /db_xref="GeneID:1252756" regulatory 1324219..1324227 /regulatory_class="minus_35_signal" /gene="icdA" /locus_tag="STM1238" /note="putative -35_signal for icdA; RegulonDB:STMLTH004480" protein_bind 1324238..1324300 /gene="icdA" /locus_tag="STM1238" /note="putative binding site for ArcA, RegulonDB: STMS1H000016" /bound_moiety="ArcA" regulatory 1324246..1324254 /regulatory_class="minus_10_signal" /gene="icdA" /locus_tag="STM1238" /note="putative -10_signal for icdA; RegulonDB:STMLTH004480" regulatory 1324363..1324368 /regulatory_class="ribosome_binding_site" /gene="icdA" /locus_tag="STM1238" /note="putative RBS for icdA; RegulonDB:STMS1H001493" CDS 1324375..1325625 /gene="icdA" /locus_tag="STM1238" /EC_number="1.1.1.42" /note="specific for NADP+; similar to E. coli isocitrate dehydrogenase, specific for NADP+ (AAC74220.1); Blastp hit to AAC74220.1 (416 aa), 96% identity in aa 1 - 416" /codon_start=1 /transl_table=11 /product="NADP-dependent isocitrate dehydrogenase" /protein_id="NP_460208.1" /db_xref="GI:16764593" /db_xref="GeneID:1252756" /translation="MESKVVVPVEGKKITLQNGKLNVPENPIIPFIEGDGIGVDVTPA MLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIRDYRVAIKGP LTTPVGGGIRSLNVALRQELDLYVCLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIY AGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAI TNDRDSVTLVHKGNIMKFTEGAFKDWGYQLARDEFGGELIDGGPWLKIKNPNTGKEIV VKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECAL FEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMQWFEAADLIVKGMEGAIAAKTVTYD FERLMEGAKLLKCSEFGDAIIANM" gene 1326065..1327197 /locus_tag="STM1239" /db_xref="GeneID:1252757" regulatory 1326065..1326070 /regulatory_class="ribosome_binding_site" /locus_tag="STM1239" /note="putative RBS for STM1239; RegulonDB:STMS1H001494" CDS 1326073..1327197 /locus_tag="STM1239" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460209.1" /db_xref="GI:16764594" /db_xref="GeneID:1252757" /translation="MLKPICHSGSIKVPEYLETDKEKNAGRTPLSSDIQQVRNVVEDV PLFPESRTARGSVSAAYRLSFDEVFCGLSNEERKKVYGRLFGKQVLAHIHSRCQRDAD IIREKALRRISRECGAEIDCALLLNKMVDILQNARLTINFNAAKIDFVSLLKNKEYLN SYALGCRPGDLPAYNVGRDSVETKAFELEKLADSPYAPYGQTGGFSVAYTPNSRTFST TSRPIYAALDFLNGENGGASAYGKSFFELNDNVKTNCTFSPFDIYGHRFGLDTSKLST FWHMENLIASCQNDFFGYNCFKSLVKMAKDEKFLAHSNYGKGYEGNYIEAHIHGDVCL FRDIKHVYLSLQENSYSKSQLYDYAKQINQALNRDCIILY" gene complement(1328179..1328972) /gene="envF" /locus_tag="STM1240" /db_xref="GeneID:1252758" CDS complement(1328179..1328967) /gene="envF" /locus_tag="STM1240" /note="probable lipoprotein ENVF precursor (SW:ENVF_SALTY)" /codon_start=1 /transl_table=11 /product="lipoprotein EnvF" /protein_id="NP_460210.1" /db_xref="GI:16764595" /db_xref="GeneID:1252758" /translation="MNKIHVTYKNLLLPITFIAATLISACDNDKDAMAEAEKNQEKYM QKIQQKEHQQSMFFYDKAEMQKAIANINAKGGANLAIIEVRFFKGGYSFIRQSVNTPA KVEVFKFNNGYWGGPSPVNLTIFGTITEEQKQEALKEALFKFDSINFSIIPERIQETI KRANASGIISVTEDSDIVVRAEIAHNGEFVYDITITAKNTARAVMTLNKDGSIAGYEI KEPFDPKKEAEKAQQLVEQSRKDIESQRKKAAGKMNEIQQTFKK" regulatory complement(1328967..1328972) /regulatory_class="ribosome_binding_site" /gene="envF" /locus_tag="STM1240" /note="putative RBS for envF; RegulonDB:STMS1H001495" gene complement(1329456..1329702) /gene="msgA" /locus_tag="STM1241" /db_xref="GeneID:1252759" CDS complement(1329456..1329695) /gene="msgA" /locus_tag="STM1241" /note="virulence protein MSGA (SW:MSGA_SALTY)" /codon_start=1 /transl_table=11 /product="DinI family protein" /protein_id="NP_460211.1" /db_xref="GI:16764596" /db_xref="GeneID:1252759" /translation="MFVELVYDKRNVEGLPGAREIILNELTKRVHQLFPDAQVKVKPM QANALNSDCTKTEKERLHRMLEEMFEEADMWLVAE" regulatory complement(1329697..1329702) /regulatory_class="ribosome_binding_site" /gene="msgA" /locus_tag="STM1241" /note="putative RBS for msgA; RegulonDB:STMS1H001496" gene complement(1329886..1330411) /gene="envE" /locus_tag="STM1242" /db_xref="GeneID:1252760" CDS complement(1329886..1330407) /gene="envE" /locus_tag="STM1242" /note="probable lipoprotein ENVE precursor. (SW:ENVE_SALTY)" /codon_start=1 /transl_table=11 /product="lipoprotein EnvE" /protein_id="NP_460212.1" /db_xref="GI:16764597" /db_xref="GeneID:1252760" /translation="MTLLSGKTTLVLCLSSILCGCTTNGLPTPYSINLSFPVITQNQI NSGGYYINDAEQIRTTDGLCLDAGPDQQNRLTLRECKHVQSQLFSFHRDRITQGEKCL DAAGQGTKEGTPIILYSCTGNDNQRWLTDDNKIKGKQSRKCLGTNSIIVRKGDPVVLA DCDFSRALEFTIR" regulatory complement(1330406..1330411) /regulatory_class="ribosome_binding_site" /gene="envE" /locus_tag="STM1242" /note="putative RBS for envE; RegulonDB:STMS1H001497" gene complement(1330822..1331045) /locus_tag="STM1243" /db_xref="GeneID:1252761" CDS complement(1330822..1331034) /locus_tag="STM1243" /note="cold shock-like protein CSPH. (SW:CSPH_SALTY)" /codon_start=1 /transl_table=11 /product="cold-shock protein" /protein_id="NP_460213.1" /db_xref="GI:16764598" /db_xref="GeneID:1252761" /translation="MSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISACRQHETEA LIPGIRVEFCRINGLRGPTAANVYLS" regulatory complement(1331040..1331045) /regulatory_class="ribosome_binding_site" /locus_tag="STM1243" /note="putative RBS for STM1243; RegulonDB:STMS1H001498" gene complement(1331166..1331437) /gene="pagD" /locus_tag="STM1244" /db_xref="GeneID:1252762" CDS complement(1331166..1331429) /gene="pagD" /locus_tag="STM1244" /note="virulence protein PAGD precursor. (SW:PAGD_SALTY)" /codon_start=1 /transl_table=11 /product="virulence factor" /protein_id="NP_460214.1" /db_xref="GI:16764599" /db_xref="GeneID:1252762" /translation="MKHHAFMLWSLLIFSFHVLASSGHCSGLQQASWDIFIYDFGSKT PQPPTNTDKKQARQISSPSCPTTKPMMSAPVNDARKGNTFSRT" regulatory complement(1331432..1331437) /regulatory_class="ribosome_binding_site" /gene="pagD" /locus_tag="STM1244" /note="putative RBS for pagD; RegulonDB:STMS1H001499" gene 1331478..1331655 /locus_tag="STM1245" /note="pseudogene; in-frame stop following codon 4" /pseudo /db_xref="GeneID:1252763" gene 1332234..1332798 /gene="pagC" /locus_tag="STM1246" /db_xref="GeneID:1252764" regulatory 1332234..1332239 /regulatory_class="ribosome_binding_site" /gene="pagC" /locus_tag="STM1246" /note="putative RBS for pagC; RegulonDB:STMS1H001500" CDS 1332241..1332798 /gene="pagC" /locus_tag="STM1246" /note="PhoP regulated; virulence membrane protein PAGC precursor. (SW:PAGC_SALTY)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460215.1" /db_xref="GI:16764600" /db_xref="GeneID:1252764" /translation="MKNIILSTLVITTSVLVVNVAQADTNAFSVGYAQSKVQDFKNIR GVNVKYRYEDDSPVSFISSLSYLYGDRQASGSVEPEGIHYHDKFEVKYGSLMVGPAYR LSDNFSLYALAGVGTVKATFKEHSTQDGDSFSNKISSRKTGFAWGAGVQMNPLENIVV DVGYEGSNISSTKINGFNVGVGYRF" gene 1333199..1333272 /locus_tag="STM1247" /db_xref="GeneID:1252765" tRNA 1333199..1333272 /locus_tag="STM1247" /product="tRNA-OTHER" /db_xref="GeneID:1252765" gene 1333532..1333707 /locus_tag="STM1248" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1252766" gene complement(1334035..1334385) /locus_tag="STM1249" /db_xref="GeneID:1252767" CDS complement(1334035..1334379) /locus_tag="STM1249" /codon_start=1 /transl_table=11 /product="lysozyme inhibitor" /protein_id="NP_460216.1" /db_xref="GI:16764601" /db_xref="GeneID:1252767" /translation="MMKRKLIPFTLFLAALSASTTSIAASQEISKSIYTCNDNQVMEV IYVNTEAGNAYAIISQVNEMIPMRLMKMASGANYEAIDKNYTYKLYTKGKTAELVEGD DKPVLSNCSLAN" regulatory complement(1334380..1334385) /regulatory_class="ribosome_binding_site" /locus_tag="STM1249" /note="putative RBS for STM1249; RegulonDB:STMS1H001502" gene 1335077..1335354 /locus_tag="STM1250" /db_xref="GeneID:1252768" regulatory 1335077..1335082 /regulatory_class="ribosome_binding_site" /locus_tag="STM1250" /note="putative RBS for STM1250; RegulonDB:STMS1H001503" CDS 1335082..1335354 /locus_tag="STM1250" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460217.1" /db_xref="GI:16764602" /db_xref="GeneID:1252768" /translation="MFLVVLPPVAEKDNDNVTVAETDEYDDREFYFWRPYFLPKGRPK AALGLIMEKGVGHCHNQPVYINAIDNHYQFGWWRKIVKMKGQRKWQ" gene 1335498..1335973 /locus_tag="STM1251" /db_xref="GeneID:1252769" regulatory 1335498..1335503 /regulatory_class="ribosome_binding_site" /locus_tag="STM1251" /note="putative RBS for STM1251; RegulonDB:STMS1H001504" CDS 1335506..1335973 /locus_tag="STM1251" /note="similar to E. coli heat shock protein (AAC76710.1); Blastp hit to AAC76710.1 (137 aa), 33% identity in aa 1 - 136" /codon_start=1 /transl_table=11 /product="heat-shock protein" /protein_id="NP_460218.1" /db_xref="GI:16764603" /db_xref="GeneID:1252769" /translation="MALRTLSALPVFADSLFSDRFNRIDRLFSQLTGDTPVAATPAYD LQKRDANNYLLTVSVPGWKEEELEIETVGGNLNITGKHTEETVEDQTHWIYRGIRKAD FQLSFSLPEHAKVNNAKLEQGLLLVEIYQEIPESEKPKKIAIESKPKAIEHKS" gene 1336306..1337355 /locus_tag="STM1252" /db_xref="GeneID:1252770" regulatory 1336306..1336311 /regulatory_class="ribosome_binding_site" /locus_tag="STM1252" /note="putative RBS for STM1252; RegulonDB:STMS1H001505" CDS 1336312..1337355 /locus_tag="STM1252" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460219.1" /db_xref="GI:16764604" /db_xref="GeneID:1252770" /translation="MKLALVNRQVILPESGTESFQCHASTLVRLPCGTLVAAWFAGLR EGSEDTAIWLSRYEHNIWTTPQRVAAREGEAHWNPVLFYPSDKLWLFYKVGSDVHVWK TWFITSSDRGFTWSTPAPLVNDDILPRGPVKNKLLLASNGAWIAPGSIESPERWRAFV DRSSDEGKHWSISFVPLEPDNAISGTNVALWDGIKKGRLWECCLENLLRWDGVIQPTL WESSPGHIHMLLRSTRGAIFRSDSIDYGATWSVARATSLPNNNSGIDLVSMQDGTLIL ALNPVNGNWGKRYPLSLIASQDNGESWLPLLDLESDHGEYSYPAIISEGGIVHITYTW NRKNIVYCRLQTV" gene complement(1337438..1337981) /locus_tag="STM1253" /db_xref="GeneID:1252771" CDS complement(1337438..1337968) /locus_tag="STM1253" /note="similar to E. coli putative cytochrome (AAC75040.1); Blastp hit to AAC75040.1 (186 aa), 67% identity in aa 11 - 183" /codon_start=1 /transl_table=11 /product="cytochrome b" /protein_id="NP_460220.1" /db_xref="GI:16764605" /db_xref="GeneID:1252771" /translation="MAHFSRLQITLHWLTLLLTGIAYAAIELRGWAPKGSSVYLFMKD THYDMGVLVWALMFLRLYLKHKYPDPVITPPPPHWQHVAAKLMHIALYLTFLALPLLG VAMMASGGKSWSFFGFTVPVFLTPDSTLKSDIKRIHEMLANIGYFLIAMHAAAALFHH YIQKDDTFSRMLPGKS" regulatory complement(1337976..1337981) /regulatory_class="ribosome_binding_site" /locus_tag="STM1253" /note="putative RBS for STM1253; RegulonDB:STMS1H001506" gene complement(1338117..1338436) /locus_tag="STM1254" /db_xref="GeneID:1252772" CDS complement(1338117..1338431) /locus_tag="STM1254" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460221.1" /db_xref="GI:16764606" /db_xref="GeneID:1252772" /translation="MTNKKHIFSIIFIGSLLTGCATGPSPTGIGLYTDVKGPITATSL PATKTGKACAQTVLGIVNTGDASIDSAKKAGDISLVSSVDYETTGSYPFYGKTCVVVR GQ" regulatory complement(1338431..1338436) /regulatory_class="ribosome_binding_site" /locus_tag="STM1254" /note="putative RBS for STM1254; RegulonDB:STMS1H001507" gene 1339105..1340747 /locus_tag="STM1255" /db_xref="GeneID:1252773" regulatory 1339105..1339110 /regulatory_class="ribosome_binding_site" /locus_tag="STM1255" /note="putative RBS for STM1255; RegulonDB:STMS1H001508" CDS 1339113..1340747 /locus_tag="STM1255" /note="putative substrate-binding protein (gi|2337942)" /codon_start=1 /transl_table=11 /product="nickel ABC transporter substrate-binding protein" /protein_id="NP_460222.1" /db_xref="GI:16764607" /db_xref="GeneID:1252773" /translation="MLRREKQKQRIIWDKLMIKGKLALVTCALTLVFTSSLFAASDTA DGRTLKLAIGPEPTEGFDPMLGWSHGSYLLLHAPLLKQNADMSWGNLLTEKVDTSPDG KIWTLTLKPGLKFSDGSPLTAEDVVFTYNKAAKSGGKIDMGNFSHARALDARRIEMTL SHPQSTFVNVLGSLGIVPASRYDEKTFAREPIGAGPYRLVSFQPGQQLIVEANPWYAG KKNDFNRLVFVFLDEDNAYAAARSGQLGLVRIAPSMAVAPQQDNLKLWVRDSVENRGI VFPMVPAGKKDANDYPVGNDVTADVAIRRAINYAINRKQLAEQVMEGHAIPAYSAVQG LPWQNPSVIFSDGDIAKARAILEEAGWKINSAGVREKAGKEARLTLWYASGDSTRRDL AEAVRAMLQPLGIVVSLQSGSWETVERHMHANPTLFGWGSLDPMELFHHYSGKAAGVE YYNPGYYSNPAVEAHLKQAIDAPDWQKAIPFWQQVEWDGKQGAGVQGDAAWAWLLNIQ HTYLANPCIDLGKGAPEIHGSWSVLNNLDDWTWTCR" gene 1340741..1341721 /locus_tag="STM1256" /db_xref="GeneID:1252774" regulatory 1340741..1340746 /regulatory_class="ribosome_binding_site" /locus_tag="STM1256" /note="putative RBS for STM1256; RegulonDB:STMS1H001509" CDS 1340747..1341721 /locus_tag="STM1256" /note="putative transmembrane protein (gi|2337943)" /codon_start=1 /transl_table=11 /product="peptide ABC transporter permease" /protein_id="NP_460223.1" /db_xref="GI:16764608" /db_xref="GeneID:1252774" /translation="MKLFFSHFLRLIILLVLVAAGTFILLSFSPVDPIRAYIGNDLLH VPPEQYARIAARWGLDQPLWERFGHWFWRLLQGDMGYSMLFNMPVASVIRERFATSFA LLAGAWLLSGVLGVTLGFLAGRFLHRWPDKMICRISYLLSSLPTFWIAMLLLALFAVR WPVLPVCCAWDPGNNAGTALLSERLRHLVLPVCALSLLGMGQIALHTREKIASVMKSE FIRFARAQGDKGWSLLRHQVLRHAITPALCLQFASLGELMGGALLAEKVFAYPGLGQA TIDAGLRGDVPLLMGIVLFCTLLVFAGNTISAWLVVVLNRSLERPDAL" gene 1341704..1342523 /locus_tag="STM1257" /db_xref="GeneID:1252775" regulatory 1341704..1341709 /regulatory_class="ribosome_binding_site" /locus_tag="STM1257" /note="putative RBS for STM1257; RegulonDB:STMS1H001510" CDS 1341711..1342523 /locus_tag="STM1257" /note="putative transmembrane protein (gi|2337944)" /codon_start=1 /transl_table=11 /product="peptide ABC transporter permease" /protein_id="NP_460224.1" /db_xref="GI:16764609" /db_xref="GeneID:1252775" /translation="MLYNPAPTLFRLLLSVTCLLFIAGYGYATLSQPPEVNLLARHLS PDIQHWFGTDNLGRDVWLRCFQGAFTSLQIGVGAALCSGVIALVMAAVARIHPRLDLL VRLITDAMLAMPHLLLLILICFTLGGGKSGVIAAVALTHWPRLALILRADAERVAQSD YLTLTYRLGHGHLYCWRYHYFPALLPQWLTGTLLMFPHAVLHSAALSFLGFGLAPHEP SLGLLLADALRFISHGNWWLVLFPGLMLFTLVMLFDQFARAIQRLWLRSDVC" gene 1342510..1343314 /locus_tag="STM1258" /db_xref="GeneID:1252776" regulatory 1342510..1342515 /regulatory_class="ribosome_binding_site" /locus_tag="STM1258" /note="putative RBS for STM1258; RegulonDB:STMS1H001511" CDS 1342517..1343314 /locus_tag="STM1258" /note="contains duplicated ATPase domain; putative ATPase (gi|2337945)" /codon_start=1 /transl_table=11 /product="peptide ABC transporter ATP-binding protein" /protein_id="NP_460225.1" /db_xref="GI:16764610" /db_xref="GeneID:1252776" /translation="MLSLQQVTLESARYRWYGARRWSPLLQNVSFDIAPGEMVALVGG SGEGKSLLLQCLLDLLPENLRFRGEITLDGNRLDRHTIRQLRGNTFSYVPQGVQALNP MLNIRKHLNRACHLTGRAWDETQMVQLLQQSDLEPTVLERFPRQLSGGMAKRILACHA SLSQARYILADEITAWLDTALANQLLEHLRGLCERGCGVLWVTHDLLLAARYADRIVA LHQGYITDNIRCEQLQPEEMSEPLKRQWQALPELNPLFMPTGEGIEC" gene 1343301..1343898 /locus_tag="STM1259" /db_xref="GeneID:1252777" regulatory 1343301..1343306 /regulatory_class="ribosome_binding_site" /locus_tag="STM1259" /note="putative RBS for STM1259; RegulonDB:STMS1H001512" CDS 1343308..1343898 /locus_tag="STM1259" /note="contains duplicated ATPase domain; putative ATPase (gi|2337946)" /codon_start=1 /transl_table=11 /product="peptide ABC transporter ATP-binding protein" /protein_id="NP_460226.1" /db_xref="GI:16764611" /db_xref="GeneID:1252777" /translation="MLSCRDLVIRQGGKVLWQNLTFTISAGERVGIHAPSGTGKTTLG RVLAGWQKPTAGDVLLDGSPLPLHQYCPVQLVPQHPELTFNPWRSAGDAVRDAWQPDP ETMRRLHVQPEWLTRRPMQLSGGELARIAILRALDPRTRFLIADEMTAQLDPSIQKAI WVYVLEVCRSRSLGMLVISHQSALLDQVCTRHLQVE" gene complement(1343980..1345119) /locus_tag="STM1260" /db_xref="GeneID:1252778" CDS complement(1343980..1345113) /locus_tag="STM1260" /note="hypothetical protein (gi|2337947)" /codon_start=1 /transl_table=11 /product="mechanosensitive ion channel protein MscS" /protein_id="NP_460227.1" /db_xref="GI:16764612" /db_xref="GeneID:1252778" /translation="MEYLARLNIVAMLMSTTFWINLAVVFFVTLITYWLINWLLNVVY KALQRPDKKDDAHGRLRPIVFEMLKKTSKMLIFFAAFLFSLRFVALPDRLFSTLSHAW FLVVAIQMAIWLDQGVQSWMRHLLYAPGSNKNPVTLVILGMILRVLVWSMMLLSILAN VGVDITALVASLGVGGIAIALAVQTVLSDVFASLSIGFDKPFEIGDFVVFNDVAGTIE HIGLKTTRIRSLSGEQIVCANAQLLQQTIHNYKRMQTRRIVFTFGVATATPPEKLRLI GDMVKKIITDVGETQFDRAHLLAFGQDRLTYEVVHIVNTADYNKYMDIQQEINIRIIE KLIENDIELALPSLVVRAPVQVEETRDYSNTADAKNADKRVMQ" regulatory complement(1345114..1345119) /regulatory_class="ribosome_binding_site" /locus_tag="STM1260" /note="putative RBS for STM1260; RegulonDB:STMS1H001513" gene 1345300..1345633 /locus_tag="STM1261" /db_xref="GeneID:1252779" regulatory 1345300..1345305 /regulatory_class="ribosome_binding_site" /locus_tag="STM1261" /note="putative RBS for STM1261; RegulonDB:STMS1H001514" CDS 1345307..1345633 /locus_tag="STM1261" /codon_start=1 /transl_table=11 /product="four-helix bundle copper-binding protein" /protein_id="NP_460228.1" /db_xref="GI:16764613" /db_xref="GeneID:1252779" /translation="MQQEHRECIEQCYECAAACDICASSCLREDNVEMMKHCIQLDMQ CAAICRLAAQFMALESEYSQKLCRLCADICKACAEECARHDHDHCQNCARACSQCADA CLKMAA" gene 1345637..1345710 /locus_tag="STM1262" /db_xref="GeneID:1252780" tRNA 1345637..1345710 /locus_tag="STM1262" /product="tRNA-OTHER" /db_xref="GeneID:1252780" gene 1345815..1346477 /locus_tag="STM1263" /db_xref="GeneID:1252781" regulatory 1345815..1345820 /regulatory_class="ribosome_binding_site" /locus_tag="STM1263" /note="putative RBS for STM1263; RegulonDB:STMS1H001515" CDS 1345830..1346477 /locus_tag="STM1263" /note="similar to E. coli orf, hypothetical protein (AAC75039.1); Blastp hit to AAC75039.1 (216 aa), 71% identity in aa 3 - 216" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460229.3" /db_xref="GI:1109557616" /db_xref="GeneID:1252781" /translation="MIHLKKLTMLLGMLLVNSPAFAHGHHAHGAPMTEVEQKAAAGVF DDANVRDRALTDWDGMWQSVYPYLVSGELDPVFRQKAKKDPEKTFEDIKAYYRKGYVT NVETIGIENGVIEFHRDNNVASCKYNYAGYKILTYASGKKGVRYLFECKDANSKAPKY VQFSDHIIAPRKSAHFHIFMGNTSQQALLQEMENWPTYYPYQLKANEVVDEMLHH" gene 1346579..1347374 /gene="aadA" /locus_tag="STM1264" /db_xref="GeneID:1252782" regulatory 1346579..1346584 /regulatory_class="ribosome_binding_site" /gene="aadA" /locus_tag="STM1264" /note="putative RBS for aadA; RegulonDB:STMS1H001516" CDS 1346586..1347374 /gene="aadA" /locus_tag="STM1264" /codon_start=1 /transl_table=11 /product="aminoglycoside resistance protein" /protein_id="NP_460230.1" /db_xref="GI:16764615" /db_xref="GeneID:1252782" /translation="MTLSIPPSIQCQTEAACRLITRVTGDTLRAIHLYGSAVAGGLKP NSDIDLLVTICQPLTEAQRATLMQELLALSSPPGASAEKRALEVTVVLYSQLVPWCFP PSREMQFGEWLREDICQGIYEPAQQDWDMVLLITQILETSIPLKGERAERLFTPAPAA QLLKALRYPLDLWQSTADVQGDEYHIVLTLARIWYTLSTGRFTSKDAAADWLLPQLPE DYAATLRAAQREYLGLEQQDWHILLPAVVRFVDFAKAHIPTQFT" gene 1347512..1348112 /locus_tag="STM1265" /db_xref="GeneID:1252783" regulatory 1347512..1347517 /regulatory_class="ribosome_binding_site" /locus_tag="STM1265" /note="putative RBS for STM1265; RegulonDB:STMS1H001517" CDS 1347519..1348112 /locus_tag="STM1265" /note="contains a CheY-like receiver domain and a HTH DNA-binding domain" /codon_start=1 /transl_table=11 /product="putative response regulators" /protein_id="NP_460231.1" /db_xref="GI:16764616" /db_xref="GeneID:1252783" /translation="MTGSASSVLKTDTRLLSENLFLNYGLESLFKDVAIIAGNVNYII FDIDDYYTVQQYITSTFKTVLIGIVTHNEYNFIDEHHVIYRIKVDASIAEWRELLILA AAGQFFPRSEKVRLTANERNVLAMLVKGMDIRQISCELNVHLKTIYSVRYHVLTKLGC RTVLDYQILSVSKAFTHWLTINNVDNVISRVNSKVIA" gene 1348176..1349029 /locus_tag="STM1266" /db_xref="GeneID:1252784" regulatory 1348176..1348181 /regulatory_class="ribosome_binding_site" /locus_tag="STM1266" /note="putative RBS for STM1266; RegulonDB:STMS1H001518" CDS 1348181..1349029 /locus_tag="STM1266" /note="similar to E. coli putative transcriptional regulator (AAC74246.1); Blastp hit to AAC74246.1 (243 aa), 31% identity in aa 1 - 241" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_460232.1" /db_xref="GI:16764617" /db_xref="GeneID:1252784" /translation="MATFSISAMAAQCGVTTANIRSWERYGLLQPTKDEAGNRFYCIE DAIRIQHIIDALSKGFSLKEIKPALYGEETHCRSGWLFYQEEILAQCRKFEPAKLRKL LWRYGREIPPCIVIESILRPLRLWLSAGDDDARRFEKALLDTAIIEYATFQLSSVRKA PAGTMLIAAFSLNDPIELWLETIKYCSEGMRVEVIPWQAPMPDLLSTSFEHIVLWHDE TLTPAQENLIQALKESGKFSLHVKNGSGLTLLPAVYRQHEMPESMQHVAPQIHANGYE KSGTAR" gene complement(1349284..1349542) /locus_tag="STM1267" /db_xref="GeneID:1252785" CDS complement(1349284..1349532) /locus_tag="STM1267" /note="similar to E. coli orf, hypothetical protein (AAC74250.1); Blastp hit to AAC74250.1 (88 aa), 41% identity in aa 23 - 88" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="NP_460233.1" /db_xref="GI:16764618" /db_xref="GeneID:1252785" /translation="MTTITLVNEQNSTGNPFSAHMLCEQRAIQEITYELLQSQQHVSN KDIIAKLIEKLETEKDVVQLDIYRNALEAVLFQTPDDI" regulatory complement(1349537..1349542) /regulatory_class="ribosome_binding_site" /locus_tag="STM1267" /note="putative RBS for STM1267; RegulonDB:STMS1H001519" gene complement(1349611..1349764) /locus_tag="STM1268" /db_xref="GeneID:1252786" CDS complement(1349611..1349760) /locus_tag="STM1268" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460234.1" /db_xref="GI:16764619" /db_xref="GeneID:1252786" /translation="MLIRLNWSEKKEQAVDSAESSFKVYKIYNKSHKCDAHHVFMIFY YSFMI" regulatory complement(1349759..1349764) /regulatory_class="ribosome_binding_site" /locus_tag="STM1268" /note="putative RBS for STM1268; RegulonDB:STMS1H001520" gene 1349836..1350388 /locus_tag="STM1269" /db_xref="GeneID:1252787" regulatory 1349836..1349841 /regulatory_class="ribosome_binding_site" /locus_tag="STM1269" /note="putative RBS for STM1269; RegulonDB:STMS1H001521" CDS 1349843..1350388 /locus_tag="STM1269" /codon_start=1 /transl_table=11 /product="putative chorismate mutase" /protein_id="NP_460235.1" /db_xref="GI:16764620" /db_xref="GeneID:1252787" /translation="MIRHIAIFLCSLLMCSTTFADSVTSVSLGALLTALNERMLLMKD VAAYKMKHHLPIEDFTREQNVFAEAEEEAKNNGLDPHSITPFIRSLMDASKAIQYRYL AQWRTGSEPSFPIQTLSVTRQRIRQLDNQMLIIISQRLMVGAFSHDDMVWLRAQFNAP NLNESDISNVLAALSLVRRAR" gene 1350570..1351223 /gene="yeaS" /locus_tag="STM1270" /db_xref="GeneID:1252788" regulatory 1350570..1350575 /regulatory_class="ribosome_binding_site" /gene="yeaS" /locus_tag="STM1270" /note="putative RBS for yeaS; RegulonDB:STMS1H001522" CDS 1350585..1351223 /gene="yeaS" /locus_tag="STM1270" /note="similar to E. coli orf, hypothetical protein (AAC74868.1); Blastp hit to AAC74868.1 (212 aa), 86% identity in aa 1 - 212" /codon_start=1 /transl_table=11 /product="leucine efflux protein LeuE" /protein_id="NP_460236.1" /db_xref="GI:16764621" /db_xref="GeneID:1252788" /translation="MFAEYGVLNYWTYLVGAIFIVLVPGPNTLFVLKNSVGRGVKGGY LAACGVFIGDAILMFLAYAGVATLIKTTPVLFNIVRYLGAFYLLYLGAKILYATLTSK GRAATETVVPFGAIFKRALILSLTNPKAILFYVSFFVQFIDVTAPHTGVSFFILATTL EIVSFCYLSFLILSGAFVTHYIGTKKKLAKVGNSLIGLLFVGFAARLATLQS" gene 1351385..1351758 /gene="yeaR" /locus_tag="STM1271" /db_xref="GeneID:1252789" regulatory 1351385..1351390 /regulatory_class="ribosome_binding_site" /gene="yeaR" /locus_tag="STM1271" /note="putative RBS for yeaR; RegulonDB:STMS1H001523" CDS 1351396..1351758 /gene="yeaR" /locus_tag="STM1271" /note="similar to E. coli orf, hypothetical protein (AAC74867.1); Blastp hit to AAC74867.1 (119 aa), 83% identity in aa 1 - 119" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460237.1" /db_xref="GI:16764622" /db_xref="GeneID:1252789" /translation="MRQIPQNHIHTRSTPFWNKETAPAGIFERHLDKGTRPDVYPRLS VMQGAVKYLGYADEHCSEPEEIMVINAGEFGVFPPEKWHNIEVMTDDTYFNIDFFVAP EVLMEGATSRKVIHAGRE" gene 1351745..1351943 /gene="yoaG" /locus_tag="STM1272" /db_xref="GeneID:1252790" regulatory 1351745..1351750 /regulatory_class="ribosome_binding_site" /gene="yoaG" /locus_tag="STM1272" /note="putative RBS for yoaG; RegulonDB:STMS1H001524" CDS 1351761..1351943 /gene="yoaG" /locus_tag="STM1272" /note="similar to E. coli orf, hypothetical protein (AAC74866.1); Blastp hit to AAC74866.1 (60 aa), 96% identity in aa 1 - 60" /codon_start=1 /transl_table=11 /product="DUF1869 domain-containing protein" /protein_id="NP_460238.1" /db_xref="GI:16764623" /db_xref="GeneID:1252790" /translation="MGKATYTVTVTNNSNGVSVDYETEAPMTLLVPEVAAEVVKDLVN TVRSYDTENEHDVCGW" gene 1352168..1352814 /locus_tag="STM1273" /db_xref="GeneID:1252791" regulatory 1352168..1352173 /regulatory_class="ribosome_binding_site" /locus_tag="STM1273" /note="putative RBS for STM1273; RegulonDB:STMS1H001525" CDS 1352173..1352814 /locus_tag="STM1273" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460239.1" /db_xref="GI:16764624" /db_xref="GeneID:1252791" /translation="MKLDTRLTSSALTLALAAVVIPFTADWQLPLLNGVVVRWIENGQ ALWLLFGALFTAWYIRPLSRPEGAKQFWLWAVVWWVVLLGRSTSWGRDYFPDEPRMLF RTISVILIAALVLPVLFSAGLRKEIVRRLRDVPLPLWLFAVTTCSYLISDTVEHHRWL SPIFLHNARYTDLIEELYEVPFMIGLFMVTVGFMQQDKQDECTALEMTPYHAK" gene 1353120..1353377 /gene="yeaQ" /locus_tag="STM1274" /db_xref="GeneID:1252792" regulatory 1353120..1353125 /regulatory_class="ribosome_binding_site" /gene="yeaQ" /locus_tag="STM1274" /note="putative RBS for yeaQ; RegulonDB:STMS1H001526" CDS 1353129..1353377 /gene="yeaQ" /locus_tag="STM1274" /note="similar to E. coli orf, hypothetical protein (AAC74865.1); Blastp hit to AAC74865.1 (82 aa), 95% identity in aa 1 - 82" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460240.1" /db_xref="GI:16764625" /db_xref="GeneID:1252792" /translation="MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGG WISTFFGFGKVDGFNFGSFAVAVIGAIVVLLIYRKIKS" gene 1353799..1354061 /gene="yaoF" /locus_tag="STM1275" /db_xref="GeneID:1252793" regulatory 1353799..1353804 /regulatory_class="ribosome_binding_site" /gene="yaoF" /locus_tag="STM1275" /note="putative RBS for yaoF; RegulonDB:STMS1H001527" CDS 1353810..1354061 /gene="yaoF" /locus_tag="STM1275" /note="similar to E. coli orf, hypothetical protein (AAC74863.1); Blastp hit to AAC74863.1 (84 aa), 63% identity in aa 1 - 84" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460241.1" /db_xref="GI:16764626" /db_xref="GeneID:1252793" /translation="MKFTWIALPGVLLLSACSSSQPNAPRPPRIGMPNPAAVYCEQQG GTLMPVQTPQGVRSDCKLPNGEIIDEWTLWRREHPDTKK" gene 1354125..1354441 /locus_tag="STM1276" /db_xref="GeneID:1252794" regulatory 1354125..1354130 /regulatory_class="ribosome_binding_site" /locus_tag="STM1276" /note="putative RBS for STM1276; RegulonDB:STMS1H001528" CDS 1354130..1354441 /locus_tag="STM1276" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460242.1" /db_xref="GI:16764627" /db_xref="GeneID:1252794" /translation="MFQLKPGALAIVIGAKTPAGRQNIGKSVELFCLCQPGDEFINPV NGHVTLLPKEAPRALWLVTGDVASADGQHGFAWVRAEHLMPLSPDRQPGQAAARQSQL S" gene complement(1354427..1354786) /gene="yeaO" /locus_tag="STM1277" /db_xref="GeneID:1252795" CDS complement(1354427..1354774) /gene="yeaO" /locus_tag="STM1277" /note="similar to E. coli orf, hypothetical protein (AAC74862.1); Blastp hit to AAC74862.1 (122 aa), 73% identity in aa 8 - 122" /codon_start=1 /transl_table=11 /product="MarR family transcriptional regulator" /protein_id="NP_460243.1" /db_xref="GI:16764628" /db_xref="GeneID:1252795" /translation="MRIQCKRVYFPAEKDDGYRVLVDRLWPRGIKKAALVYDEWNKAI TPSTELRKAFHSELIDFNHFAQQYRAELAQQHQEGKRLADIARHQPLTLLYAAKDTRQ NHAIVLAEWLREL" regulatory complement(1354781..1354786) /regulatory_class="ribosome_binding_site" /gene="yeaO" /locus_tag="STM1277" /note="putative RBS for yeaO; RegulonDB:STMS1H001529" gene complement(1354893..1356094) /gene="yeaN" /locus_tag="STM1278" /db_xref="GeneID:1252796" CDS complement(1354893..1356077) /gene="yeaN" /locus_tag="STM1278" /note="similar to E. coli putative amino acid/amine transport protein (AAC74861.1); Blastp hit to AAC74861.1 (393 aa), 81% identity in aa 1 - 392" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460244.1" /db_xref="GI:16764629" /db_xref="GeneID:1252796" /translation="MTTALSPRGKQGALLIAGILMIATTLRVTFTGAAPLLETIRSDY GLSTAQTGLLTTLPLLAFALVSPLAAGIARRFGMERSLFAAMLLICAGIALRSLPSAA LLFAGTAIIGCGIALGNVLLPGLIKRDFSQHVARLTGAYSLTMGAAAALGSALVVPLA LHGFGWRGALLMLMLFPLLAFLIWLPQWRTTRSANLSSSRALHERGIWRSPLAWQVTL FLGLNSLIYYVIIGWLPTILISHGYSEAQAGSLHGLLQLATAAPGLAIPLILHRFNDQ RWIAALVSLLCAVGAAGLWFVPGQAIIWTLLFGFGSGATMILGLTFIGLRASSAHQAA ALSGMAQSVGYLLAACGPPVMGKLHDASGSWYLPLSGVTVLAIIMAIFGLYAGRDREI AS" regulatory complement(1356089..1356094) /regulatory_class="ribosome_binding_site" /gene="yeaN" /locus_tag="STM1278" /note="putative RBS for yeaN; RegulonDB:STMS1H001530" gene 1356166..1356972 /gene="yeaM" /locus_tag="STM1279" /db_xref="GeneID:1252797" regulatory 1356166..1356171 /regulatory_class="ribosome_binding_site" /gene="yeaM" /locus_tag="STM1279" /note="putative RBS for yeaM; RegulonDB:STMS1H001531" CDS 1356178..1356972 /gene="yeaM" /locus_tag="STM1279" /note="similar to E. coli putative ARAC-type regulatory protein (AAC74860.1); Blastp hit to AAC74860.1 (273 aa), 76% identity in aa 5 - 256" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="NP_460245.1" /db_xref="GI:16764630" /db_xref="GeneID:1252797" /translation="MIGLRLDGYDPDLHHDAAVAFCIRARDDELFSPRHQHRKGQLIL ALHGAITCEVENAMWMVPPQYAVWLPGSLPHSNHVTAGAELCFLFIEPAAVVMPERCC TLKISPLCRELILSLARRTDPERAQMPTQRLIQVLFDELPQQPQEQLQLPVSGHPKIR QMVETMAQEPARWNTLGQWASVFAMSERNLARLVVKETGLSFRRWRHQLQLILALQAL IAGRNVQQTAQMLGYDSTTAFITMFKKGLGQTPGQYLTGELLLPHN" gene complement(1356952..1357398) /gene="yeaL" /locus_tag="STM1280" /db_xref="GeneID:1252798" CDS complement(1356952..1357398) /gene="yeaL" /locus_tag="STM1280" /note="similar to E. coli orf, hypothetical protein (AAC74859.1); Blastp hit to AAC74859.1 (148 aa), 94% identity in aa 1 - 130" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460246.2" /db_xref="GI:1109557617" /db_xref="GeneID:1252798" /translation="MFDVTLLILLGLAALGFISHNTTVAVSILVLIIVRVTPLNTFFP WIEKQGLTVGIIILTIGVMAPIASGTLPPSTLIHSFVNWKSLVAIAVGVFVSWLGGRG ITLMGNQPQLVAGLLVGTVLGVALFRGVPVGPLIAAGLVSLIVGKQ" regulatory complement(1357405..1357410) /regulatory_class="ribosome_binding_site" /note="putative RBS for yeaL; RegulonDB:STMS1H001532" gene 1357592..1357711 /locus_tag="STM1281" /db_xref="GeneID:1252799" regulatory 1357592..1357597 /regulatory_class="ribosome_binding_site" /locus_tag="STM1281" /note="putative RBS for STM1281; RegulonDB:STMS1H001533" CDS 1357604..1357711 /locus_tag="STM1281" /note="similar to E. coli orf, hypothetical protein (AAC74858.1); Blastp hit to AAC74858.1 (50 aa), 55% identity in aa 17 - 50" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460247.1" /db_xref="GI:16764632" /db_xref="GeneID:1252799" /translation="MYDPPFLEALMITASFFAIFIIIVVSVLLLEGGGD" gene complement(1357708..1358240) /gene="yeaK" /locus_tag="STM1282" /db_xref="GeneID:1252800" CDS complement(1357708..1358226) /gene="yeaK" /locus_tag="STM1282" /note="similar to E. coli orf, hypothetical protein (AAC74857.1); Blastp hit to AAC74857.1 (167 aa), 87% identity in aa 1 - 165" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460248.1" /db_xref="GI:16764633" /db_xref="GeneID:1252800" /translation="MTEVAKGVATHQRLVALLTQENARYRVVNHEAVGKCEAVSEIRG TALGQGAKALVCKVKGNGVNQHVLAILAADQQADLSQLASHLGGLRASLASPAEVDML TGCVFGAIPPFSFHPNLKLVADPLLFERFDEIAFNAGLLEKSVIMNTQDYLRIARPEL AVFRRFQSSPTA" regulatory complement(1358235..1358240) /regulatory_class="ribosome_binding_site" /gene="yeaK" /locus_tag="STM1282" /note="putative RBS for yeaK; RegulonDB:STMS1H001534" gene complement(1358276..1359786) /gene="yeaJ" /locus_tag="STM1283" /db_xref="GeneID:1252801" CDS complement(1358276..1359769) /gene="yeaJ" /locus_tag="STM1283" /note="Diguanylate cyclase/phosphodiesterase domain 1; similar to E. coli orf, hypothetical protein (AAC74856.1); Blastp hit to AAC74856.1 (556 aa), 68% identity in aa 61 - 556" /codon_start=1 /transl_table=11 /product="diguanylate cylase" /protein_id="NP_460249.1" /db_xref="GI:16764634" /db_xref="GeneID:1252801" /translation="MNLHHKALRHFISASVIVLTSSFLIYELIASDRAMNAYMRYIME RADSSFLYDKYQNQSIAAHLMRTFEAPGDPVTAEKHRAFCDAFEAINGTHGVNLTRHN YPALHGTLQTAATQCTDNLDDALLLPAFDQAVSINRSQDDHSHGLGTLELKFRYYVDL NKHYVYFYDLINSRRFAMHRWTFLQKGTMGINRKDIDKLFTGRTVISSIYMDDITQEN VMSFLTPVYLAGSLKGIVMVDVNQDNLKNIFYTQDRPLVWRYLNVTLKDMDSGKEIII NQSKNNLFQYVNYSHDIPGGLRVSLSLDLTYFLVSSWKALAFYLLATALLLNMVRMHF RLYRNVTRENISDAMTGLYNRKILTPVLEQRLQRLVNTGTPVTFVAIDCDRLKLINDT QGHQEGDRIITLLAKAIKTSIRKSDYAIRLGGDEFCIILVDYAADLAIHLPERIIRNL QIIAPDKTVHFSAGIYNMQPNDTINDAYQASDAQLYLNKQQKQHRSS" regulatory complement(1359781..1359786) /regulatory_class="ribosome_binding_site" /gene="yeaJ" /locus_tag="STM1283" /note="putative RBS for yeaJ; RegulonDB:STMS1H001535" gene complement(1360410..1361707) /gene="yeaH" /locus_tag="STM1284" /db_xref="GeneID:1252802" CDS complement(1360410..1361696) /gene="yeaH" /locus_tag="STM1284" /note="similar to E. coli orf, hypothetical protein (AAC74854.1); Blastp hit to AAC74854.1 (427 aa), 94% identity in aa 1 - 423" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460250.1" /db_xref="GI:16764635" /db_xref="GeneID:1252802" /translation="MTWFIDRRLNGKNKSTVNRQRFLRRYKAQIKQSISEAINKRSVT DVDSGESVSIPTDDISEPMFHQGRGGLRHRVHPGNDHFIQNDRIERPQGGGGGGSGSG QGQASQDGEGQDEFVFQISKDEYLDLLFEDLALPNLKKNQHRQLNEYKTHRAGFTSNG VPANISVVRSLQNSLARRTAMTAGKRRELHALETELETISHSEPAQLLEEERLRREIA ELRAKIERVPFIDTFDLRYKNYEKRPEPSSQAVMFCLMDVSGSMDQATKDMAKRFYIL LYLFLSRTYKNVEVVYIRHHTQAKEVDEHEFFYSQETGGTIVSSALKLMDEVVKERYD PGQWNIYAAQASDGDNWADDSPLCHEILAKKLLPVVRYYSYIEITRRAHQTLWREYEH LQATFDNFAMQHIRDQEDIYPVFRELFQKQSANQSA" regulatory complement(1361702..1361707) /regulatory_class="ribosome_binding_site" /gene="yeaH" /locus_tag="STM1284" /note="putative RBS for yeaH; RegulonDB:STMS1H001536" gene complement(1361819..1363767) /gene="yeaG" /locus_tag="STM1285" /db_xref="GeneID:1252803" CDS complement(1361819..1363753) /gene="yeaG" /locus_tag="STM1285" /note="similar to E. coli orf, hypothetical protein (AAC74853.1); Blastp hit to AAC74853.1 (644 aa), 98% identity in aa 1 - 644" /codon_start=1 /transl_table=11 /product="PrkA family serine protein kinase" /protein_id="NP_460251.1" /db_xref="GI:16764636" /db_xref="GeneID:1252803" /translation="MNIFDHYRQRYEAAKDEEFTLQDFLTICRQDRSAYANAAERLLM AIGEPNMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEK KQILYLLGPVGGGKSSLAERLKSLMQRVPIYVLSANGERSPVNDHPLCLFNPQEDAQI LEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILEQIAIAKTEPGDEN NQDISALVGKVDIRKLEHHAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLL TATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLR ISEEIKIYEKLLNHSELAHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGES LKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHAEVAANPVHLFYVL EQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVT YADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARAN NSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVISFNAKTSTDEQKKHDDFVDRMMEKG YTRKQVRLLCEWYLRVRKSS" regulatory complement(1363762..1363767) /regulatory_class="ribosome_binding_site" /gene="yeaG" /locus_tag="STM1285" /note="putative RBS for yeaG; RegulonDB:STMS1H001537" gene 1364165..1364926 /gene="mipA" /locus_tag="STM1286" /db_xref="GeneID:1252804" regulatory 1364165..1364170 /regulatory_class="ribosome_binding_site" /gene="mipA" /locus_tag="STM1286" /note="putative RBS for mipA; RegulonDB:STMS1H001538" CDS 1364180..1364926 /gene="mipA" /locus_tag="STM1286" /note="similar to E. coli orf, hypothetical protein (AAC74852.1); Blastp hit to AAC74852.1 (248 aa), 83% identity in aa 1 - 248" /codon_start=1 /transl_table=11 /product="MltA-interacting protein MipA" /protein_id="NP_460252.1" /db_xref="GI:16764637" /db_xref="GeneID:1252804" /translation="MTKLKLLALGVFIATSASVAHAESNLTLGAGVGVVEHPYKDYDS DVYPIPVIAYESENFWFRGLGGGYYLWNDNADKLSIMAYWSPMYFKPGDSDDHQLRRL DRRKSTMMAGVSYAHHTQYGFLRTSLAGDTLDNSNGIVWDLAWLYRYTNGGLTLTPGI GVEWNSENQNDYYYGVSRKESSRSGLRGYNPNDSWNPYLELSANYNFAGNWSVYGTAR YTRLSDEITDSPMVDKSWTGILSTGVTYRF" gene 1365216..1366412 /locus_tag="STM1287" /db_xref="GeneID:1252805" CDS 1365216..1366412 /locus_tag="STM1287" /note="similar to E. coli putative arylsulfatase regulator (AAC76803.1); Blastp hit to AAC76803.1 (411 aa), 46% identity in aa 10 - 401" /codon_start=1 /transl_table=11 /product="anaerobic sulfatase maturase" /protein_id="NP_460253.1" /db_xref="GI:16764638" /db_xref="GeneID:1252805" /translation="MSIVFNTVAKPSGSLCNLSCKYCFYLDKPRGQRVMSDDVLETYI RRVIDDTPSSEVSFCWQGGEPTLCGLSFYQKVVRLQQRYANGKTIYNSLQTNGVLINE EWAAFFAQHQFLIGISIDGPQVVHDNYRKTPSGRASFSRVVNAIRLLQANDVEFNTLT VVNDASCCHGNAIYHFLTQELESKHLQFIPIVEPLAQKAQRSLTLSDNEDSPSLMPFS VTPEGWGAFMCDVFDQWIRHDVGRIFVQLFDNLLGVWMGEPATLCTMQSTCGQSLLVE QNGDVFSCDHFVFPAYKLGNLQQHSLEEMAASPFQQQFGAAKANLSSRCQNCTWRFAC HGGCPKHRICMDGGERQNYLCKGYLEFFQHVTPYMNVMRQLLLNQRPAAHITRIVDMI ADDVRQ" gene 1366503..1367366 /locus_tag="STM1288" /db_xref="GeneID:1252806" regulatory 1366503..1366508 /regulatory_class="ribosome_binding_site" /locus_tag="STM1288" /note="putative RBS for STM1288; RegulonDB:STMS1H001539" CDS 1366509..1367366 /locus_tag="STM1288" /note="similar to E. coli putative an aldehyde reductase (AAC74851.1); Blastp hit to AAC74851.1 (284 aa), 78% identity in aa 4 - 284" /codon_start=1 /transl_table=11 /product="putative aldehyde reductase" /protein_id="NP_460254.1" /db_xref="GI:16764639" /db_xref="GeneID:1252806" /translation="MKSVKNVTFCGQVTLPAIGQGTWYMGERADQRQREVSALRAGLD LGLRLIDTAEMYADGGAEKVVGEALAGRRDEAFLVSKVYPWNAGGQKIVAACEESLRR LKTDYLDLYLLHWAGSFSFEETVEGMERLIAQGKIRRWGVSNLDYDDMQALWRIPGGQ QCATNQVLYHLASRGIEYDLLPWCQQQRMPVMAYSPLAQAGRLRSGLLNHPVVNEIAQ AHNATAAQILLTWVIAHPGVMAIPKAGSTEHVKQNAAALEIALSANELALLDNAWPAP KGKTALDMV" gene complement(1367465..1368361) /gene="yeaD" /locus_tag="STM1289" /db_xref="GeneID:1252807" CDS complement(1367465..1368349) /gene="yeaD" /locus_tag="STM1289" /note="similar to E. coli orf, hypothetical protein (AAC74850.1); Blastp hit to AAC74850.1 (301 aa), 82% identity in aa 8 - 301" /codon_start=1 /transl_table=11 /product="D-hexose-6-phosphate mutarotase" /protein_id="NP_460255.1" /db_xref="GI:16764640" /db_xref="GeneID:1252807" /translation="MINKIFALPVIEQLTPVLSRRQLDDLDLIVVDHPQVKASFALQG AHLLSWKPVGEEEVLWLSNNTPFKTGVALRGGVPICWPWFGPAAQQGLPSHGFARNLP WALKAHNEDDNGVMLTFELQSSEATRKYWPHDFTLLARFKVGKTCEIELEAHGEFATT SALHSYFNVGDIANVKVSGLGDRFIDKVNDAKEGVLTDGIQTFPDRTDRVYLNPEACS VIHDATLNRTIDVVHHHHLNVVGWNPGPALSVSMGDMPDDGYKTFVCVETVYATAPQQ ATEEKPSRLAQTICVAKR" regulatory complement(1368356..1368361) /regulatory_class="ribosome_binding_site" /gene="yeaD" /locus_tag="STM1289" /note="putative RBS for yeaD; RegulonDB:STMS1H001540" gene complement(1368684..1369691) /gene="gapA" /locus_tag="STM1290" /db_xref="GeneID:1252808" CDS complement(1368684..1369679) /gene="gapA" /locus_tag="STM1290" /EC_number="1.2.1.12" /note="glyceraldehyde 3-phosphate dehydrogenase. (SW:G3P1_SALTY)" /codon_start=1 /transl_table=11 /product="type I glyceraldehyde-3-phosphate dehydrogenase" /protein_id="NP_460256.1" /db_xref="GI:16764641" /db_xref="GeneID:1252808" /translation="MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDAEYMAYM LKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLT DETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKYEGQDIVSNASCTTNCLAPLAK VINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKV LPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTE DDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK" regulatory complement(1369686..1369691) /regulatory_class="ribosome_binding_site" /gene="gapA" /locus_tag="STM1290" /note="putative RBS for gapA; RegulonDB:STMS1H001541" gene 1369983..1370434 /gene="yeaA" /locus_tag="STM1291" /db_xref="GeneID:1252809" regulatory 1369983..1369988 /regulatory_class="ribosome_binding_site" /gene="yeaA" /locus_tag="STM1291" /note="putative RBS for yeaA; RegulonDB:STMS1H001542" CDS 1369991..1370434 /gene="yeaA" /locus_tag="STM1291" /note="putative domain frequently associated with peptide methionine sulfoxide reductase; similar to E. coli orf, hypothetical protein (AAC74848.1); Blastp hit to AAC74848.1 (137 aa), 85% identity in aa 1 - 137" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460257.1" /db_xref="GI:16764642" /db_xref="GeneID:1252809" /translation="MSTFKVRCEQMANQPSAEELKKKLSEMQFYVTQDRGTEPPFTGR LLHNKRDGVYHCLVCDTPLFHSHTKYDSGCGWPSFYQPVSEEAIRYIDDFSHGMQRVE IRCGNCDAHLGHVFPDGPQPTGERYCVNSASLAFSDEKNGDQLKG" gene 1370460..1370754 /gene="yeaC" /locus_tag="STM1292" /db_xref="GeneID:1252810" regulatory 1370460..1370465 /regulatory_class="ribosome_binding_site" /gene="yeaC" /locus_tag="STM1292" /note="putative RBS for yeaC; RegulonDB:STMS1H001543" CDS 1370476..1370754 /gene="yeaC" /locus_tag="STM1292" /note="similar to E. coli orf, hypothetical protein (AAC74847.1); Blastp hit to AAC74847.1 (105 aa), 87% identity in aa 16 - 105" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460258.1" /db_xref="GI:16764643" /db_xref="GeneID:1252810" /translation="MNLDEIINSMTPEVYQRLSTAVELGKWPDGVALTPEQKENSLQL VMLWQARHNTEAQHMTIDTHGQMVMKSKQQLKADFGITSKPIATLKMQ" gene complement(1371106..1371774) /gene="pncA" /locus_tag="STM1293" /db_xref="GeneID:1252811" CDS complement(1371106..1371762) /gene="pncA" /locus_tag="STM1293" /EC_number="3.5.1.-" /EC_number="3.5.1.19" /note="similar to E. coli orf, hypothetical protein (AAC74838.1); Blastp hit to AAC74838.1 (219 aa), 80% identity in aa 7 - 219" /codon_start=1 /transl_table=11 /product="nicotinamidase" /protein_id="NP_460259.1" /db_xref="GI:16764644" /db_xref="GeneID:1252811" /translation="MTNRALLLVDLQNDFCAGGALAVAEGDSTIDIANALIDWCQPRQ IPVLASQDWHPAQHGSFASQHQAEPYSQGKLDGLPQTLWPDHCVQHTDGAALHPLLNQ HAIDACIYKGENPLIDSYSAFFDNEHRQKTTLDTWLREHDVTELIVMGLATDYCVKFT VLDALELGYAVNVITDGCRGVNIHPQDSAHAFMEMASAGATLYTLADWEETQGQAVAR " regulatory complement(1371769..1371774) /regulatory_class="ribosome_binding_site" /gene="pncA" /locus_tag="STM1293" /note="putative RBS for pncA; RegulonDB:STMS1H001544" gene complement(1371789..1372822) /gene="ansA" /locus_tag="STM1294" /db_xref="GeneID:1252812" CDS complement(1371789..1372805) /gene="ansA" /locus_tag="STM1294" /EC_number="3.5.1.1" /note="similar to E. coli cytoplasmic L-asparaginase I (AAC74837.1); Blastp hit to AAC74837.1 (338 aa), 94% identity in aa 1 - 338" /codon_start=1 /transl_table=11 /product="L-asparaginase 1" /protein_id="NP_460260.1" /db_xref="GI:16764645" /db_xref="GeneID:1252812" /translation="MQKKSIYVAYTGGTIGMQRSDKGYIPVSGHLQRQLALMPEFHRP EMPDFTIHEYAPLMDSSDMTPEDWQHIAADIKAHYDEYDGFVILHGTDTMAFTASALS FMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINEVTLFFNNRLFRGNR TTKAHADGFDAFASPNLPPLLEAGIHIRRLNTPPAPYGSGELIVHPITPQPIGVVTIY PGISAEVVRNFLRQPVKALILRSYGVGNAPQNKAFLQELKEASSRGIVVVNLTQCMSG RVNMGGYATGNALAHAGVIGGADMTVEATLTKLHYLLSQGLDTQAIRSAMAQNLRGEL TPDD" regulatory complement(1372817..1372822) /regulatory_class="ribosome_binding_site" /gene="ansA" /locus_tag="STM1294" /note="putative RBS for ansA; RegulonDB:STMS1H001545" gene complement(1372901..1374769) /gene="sppA" /locus_tag="STM1295" /db_xref="GeneID:1252813" CDS complement(1372901..1374757) /gene="sppA" /locus_tag="STM1295" /EC_number="3.4.21.-" /note="signal peptide peptidase; similar to E. coli protease IV, a signal peptide peptidase (AAC74836.1); Blastp hit to AAC74836.1 (618 aa), 86% identity in aa 1 - 618" /codon_start=1 /transl_table=11 /product="signal peptide peptidase SppA" /protein_id="NP_460261.1" /db_xref="GI:16764646" /db_xref="GeneID:1252813" /translation="MRTLWRFIAGFFKWTWRVLNFVREMVLNLFFIFLVLVGVGIWMQ IGNGSNSEQTARGALLLDISGVIVDKPSTNHRLGALGRQLFGASSDRLQENSLFDIVN AIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKALREFRDSGKPVFAVGENYSQGQY YLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKVSTHVFRVGTYKSAVEPFIRD DMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGAQAIIDGLTSVGGDTAKYA LDHKLVDALASSADVEKALTKQFGWSKTENNYRAISYYDYSLKTPADTGGTIAVIFAN GAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASEVIRAELAAA RAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGV HSDGVSTSPLADISMTKALSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQ GHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKLKQWHLDYYQDEPTVLDMVMDSMTG SVRAMLPETIQAMLPAPLVSAANTVKAEGDKLAAFNDPQNRYAFCLTCANVR" regulatory complement(1374764..1374769) /regulatory_class="ribosome_binding_site" /gene="sppA" /locus_tag="STM1295" /note="putative RBS for sppA; RegulonDB:STMS1H001546" gene 1374917..1375482 /gene="ydjA" /locus_tag="STM1296" /db_xref="GeneID:1252814" regulatory 1374917..1374922 /regulatory_class="ribosome_binding_site" /gene="ydjA" /locus_tag="STM1296" /note="putative RBS for ydjA; RegulonDB:STMS1H001547" CDS 1374931..1375482 /gene="ydjA" /locus_tag="STM1296" /note="similar to E. coli orf, hypothetical protein (AAC74835.1); Blastp hit to AAC74835.1 (183 aa), 88% identity in aa 1 - 183" /codon_start=1 /transl_table=11 /product="NAD(P)H nitroreductase" /protein_id="NP_460262.1" /db_xref="GI:16764647" /db_xref="GeneID:1252814" /translation="MDALELLVNRRSASRLAEPAPVGEQLQNILRAGMRVPDHKSLQP WRFFVIEGEGRDRFSAVLEQGAVAAGGDEKAIEKARNAPFRAPLIITVVAKCEENHKV PVWEQEMSAGCAVMAMQMAAIAQGFNGIWRSGALTESAIVREAFECRPQDKIVGFLYL GTPQLKASTTISTPDPTPFVRYF" gene 1375588..1376643 /gene="selD" /locus_tag="STM1297" /db_xref="GeneID:1252815" regulatory 1375588..1375593 /regulatory_class="ribosome_binding_site" /gene="selD" /locus_tag="STM1297" /note="putative RBS for selD; RegulonDB:STMS1H001548" CDS 1375600..1376643 /gene="selD" /locus_tag="STM1297" /EC_number="2.7.9.3" /note="similar to E. coli selenophosphate synthase, H(2)Se added to acrylyl-tRNA (AAC74834.1); Blastp hit to AAC74834.1 (347 aa), 92% identity in aa 1 - 347" /codon_start=1 /transl_table=11 /product="selenophosphate synthase" /protein_id="NP_460263.1" /db_xref="GI:16764648" /db_xref="GeneID:1252815" /translation="MSEQAIRLTQYSHGAGCGCKISPKVLETILHSEQAKFVDPNLLV GNETRDDAAVYDLGNGTSIISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMA IAILGWPINTLSPDIAREVTEGGRFACRQAGIALAGGHSIDAPEPIFGLAVTGVVPTE RVKKNSTAQAGCKLFLTKPLGIGVLTTAEKKSLLKPEHQGLATEVMCRMNVAGAAFAN IDGVKAMTDVTGFGLLGHLSEMCQGAGVQALLCYQDIPKLPGVEEYIALGAVPGGTER NFASYGHLMGDMSREVRSLLCDPQTSGGLLLAVTPDAEDDVKATAAEFGIDLTAIGEL VEARGGRAMVEIR" gene 1376648..1378597 /gene="topB" /locus_tag="STM1298" /db_xref="GeneID:1252816" CDS 1376648..1378597 /gene="topB" /locus_tag="STM1298" /EC_number="5.99.1.2" /note="DNA topoisomerase III (SW:TOP3_SALTY)" /codon_start=1 /transl_table=11 /product="DNA topoisomerase III" /protein_id="NP_460264.1" /db_xref="GI:16764649" /db_xref="GeneID:1252816" /translation="MRLFIAEKPSLGRAIADVLPKPHRKGDGFIECGNGQVVTWCIGH LLEQAQPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHQAGEIIHAG DPDREGQLLVDEVLDYLQLPAEKRQQVRRCLINDLNPQAVERAIDRLRANSDFVPLCV SALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVA KDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRINGQPALV TSYNDKRESESAPLPFSLSTLQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCR YLPEEHFAGRQAVMNAISVHAPDLLPQPVVNPDTRNRCWDDKKVDAHHAIIPTARSSS VHLTENEAKVYTLIARQYLMQFCPDAVFRKCVIELEIAKGKFVAKARFLAEAGWRTLL GSKERDEENDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQ DKDLKKILRATDGLGTEATRAGIIELLFKRSFLTKKGRYIHSTDAGKALIHSLPEMAA RPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIEQAKRTPVKRFRGIVAPGGGD KKKSAPRKRAGKKSPPAAETGRQTE" gene complement(1378627..1379985) /gene="gdhA" /locus_tag="STM1299" /db_xref="GeneID:1252817" CDS complement(1378627..1379970) /gene="gdhA" /locus_tag="STM1299" /EC_number="1.4.1.4" /note="NADP-specific glutamate dehydrogenase. (SW:DHE4_SALTY)" /codon_start=1 /transl_table=11 /product="glutamate dehydrogenase" /protein_id="NP_460265.1" /db_xref="GI:16764650" /db_xref="GeneID:1252817" /translation="MDQTCSLESFLNHVQKRDPHQTEFAQAVREVMTTLWPFLEQNPR YRHMSLLERLVEPERVIQFRVVWLDDKNQVQVNRAWRVQFNSAIGPYKGGMRFHPSVN LSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGP DTDVPAGDIGVGGREVGFMAGMMRKLSNNSSCVFTGKGLSFGGSLIRPEATGYGLVYF TEAMLKRHGLGFEGMRVAVSGSGNVAQYAIEKAMAFGARVVTASDSSGTVVDESGFTP EKLARLCEIKASRDGRVADYAREFGLTYLEGQQPWSVPVDIALPCATQNELDVDAARV LIANGVKAVAEGANMPTTIEATDLFLEAGVLFAPGKAANAGGVATSGLEMAQNAARLS WKAEKVDARLHHIMLDIHHACVEYGGDNKHTNYVQGANIAGFVKVADAMLAQGVI" regulatory complement(1379980..1379985) /regulatory_class="ribosome_binding_site" /gene="gdhA" /locus_tag="STM1299" /note="putative RBS for gdhA; RegulonDB:STMS1H001549" gene 1380198..1380484 /locus_tag="STM1300" /db_xref="GeneID:1252818" regulatory 1380198..1380203 /regulatory_class="ribosome_binding_site" /locus_tag="STM1300" /note="putative RBS for STM1300; RegulonDB:STMS1H001550" CDS 1380209..1380484 /locus_tag="STM1300" /note="similar to E. coli orf, hypothetical protein (AAC74830.1); Blastp hit to AAC74830.1 (90 aa), 73% identity in aa 1 - 89" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460266.1" /db_xref="GI:16764651" /db_xref="GeneID:1252818" /translation="MRRSLVVAVMAIMPMVGLANQNSRPDIQVNVPPEVFSTRGQSSQ PCIQCCVYQDQNYSEGAVIKVEGVLLQCQRDEKTISTNPLVWRRVKL" gene complement(1380444..1380860) /locus_tag="STM1301" /db_xref="GeneID:1252819" CDS complement(1380444..1380860) /locus_tag="STM1301" /note="similar to E. coli orf, hypothetical protein (AAC74829.1); Blastp hit to AAC74829.1 (135 aa), 77% identity in aa 1 - 135" /codon_start=1 /transl_table=11 /product="NTP pyrophosphohydrolase" /protein_id="NP_460267.1" /db_xref="GI:16764652" /db_xref="GeneID:1252819" /translation="MIKKLDVVAAIIECDGKILLAQRPAHADQAGLWEFAGGKVEPGE TQPQALIRELREELGIDATPGVYIASHQRDVSGRRIHLHAWHVPAFNGLIRALEHQAL AWCTPEEALEYPLAPADIPLLQAFIALRDARLTDSC" gene complement(1380933..1381751) /gene="xthA" /locus_tag="STM1302" /db_xref="GeneID:1252820" CDS complement(1380933..1381739) /gene="xthA" /locus_tag="STM1302" /EC_number="3.1.11.2" /note="may repair singlet oxygen induced lesions; exodeoxyribonuclease III. (SW:EX3_SALTY)" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease III" /protein_id="NP_460268.1" /db_xref="GI:16764653" /db_xref="GeneID:1252820" /translation="MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDEMFPL EEVAKLGYNVFYHGQKGHYGVALLTKATPISVRRGFPDDGEEAQRRIIMAEIPSPLGN ITVINGYFPQGESRDHPLKFPAKAQFYQNLQNYLETELKCDNPVLIMGDMNISPTDLD IGIGEENRKRWLRTGKCSFLPEEREWMSRLLKWGLVDTFRQANPQTMDKFSWFDYRSK GFVDNRGLRIDLLLASAPLAERCAETGIDYDIRSMEKPSDHAPVWATFRV" regulatory complement(1381746..1381751) /regulatory_class="ribosome_binding_site" /gene="xthA" /locus_tag="STM1302" /note="putative RBS for xthA; RegulonDB:STMS1H001551" gene 1382176..1383411 /gene="astC" /locus_tag="STM1303" /db_xref="GeneID:1252821" regulatory 1382176..1382181 /regulatory_class="ribosome_binding_site" /gene="astC" /locus_tag="STM1303" /note="putative RBS for astC; RegulonDB:STMS1H001552" CDS 1382185..1383411 /gene="astC" /locus_tag="STM1303" /EC_number="2.6.1.-" /note="contains acetylornitine transaminase activity; similar to E. coli acetylornithine delta-aminotransferase (AAC74818.1); Blastp hit to AAC74818.1 (406 aa), 84% identity in aa 1 - 404" /codon_start=1 /transl_table=11 /product="aspartate aminotransferase family protein" /protein_id="NP_460269.1" /db_xref="GI:16764654" /db_xref="GeneID:1252821" /translation="MSLSVTRENFDEWMVPVYVPAPFIPVRGEGSRLWDQQGKEYIDF AGGIAVNALGHAHPALREALNEQANRFWHIGNGYTNEPALRLAKKLIDATFAERVFFC NSGAEANEAALKLARKYAHDRVGNHKSGIVAFKNAFHGRTLFTVSAGGQPTYSQDFAP LPPDIRHAAYNDLNSASALIDDNTCAVIVEPVQGEGGVIPATKAFLQGLRELCDRHQA LLIFDEVQTGVGRTGELYAYMHYGVTPDILTTAKALGGGFPIGAMLTTQDYASVMTPG THGTTYGGNPLATAVAGKVLDIINTPEMQNGVRQRHDAFIERLNTLNVRFGMFSEIRG LGLLLGCVLQTEFAGKAKLIAQEAAKAGVMVLIAGGDVVRFAPALNVSDEEIATGLDR FALACERLQTGGVPCG" gene 1383392..1384436 /gene="astA" /locus_tag="STM1304" /db_xref="GeneID:1252822" regulatory 1383392..1383397 /regulatory_class="ribosome_binding_site" /gene="astA" /locus_tag="STM1304" /note="putative RBS for astA; RegulonDB:STMS1H001553" CDS 1383402..1384436 /gene="astA" /locus_tag="STM1304" /EC_number="2.3.1.109" /note="similar to E. coli orf, hypothetical protein (AAC74817.1); Blastp hit to AAC74817.1 (344 aa), 91% identity in aa 1 - 343" /codon_start=1 /transl_table=11 /product="arginine N-succinyltransferase" /protein_id="NP_460270.1" /db_xref="GI:16764655" /db_xref="GeneID:1252822" /translation="MRVIRPVEHADIAALMQLAGKTGGGLTSLPANEATLAARIERAL KTWSGELPKGEQGYVFVLEDSETGEVGGICAIEVAVGLNDPWYNYRVGTLVHASKELN VYNALPTLFLSNDHTGSSELCTLFLDPEWRKEGNGYLLSKSRFMFMAAFRDKFNEKVV AEMRGVIDEHGYSPFWQSLGKRFFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLS EEAQAVIGEVHPQTAPARAVLEKEGFRYRHYIDIFDGGPTLECDIDRVRAIRKSRLVE VAEGQPAPGDYPACLVANENYHHFRAALVRADPQTSRLVLTAAQLDALKCRAGDHVRL VRLCAEEKTV" gene 1384419..1385911 /gene="astD" /locus_tag="STM1305" /db_xref="GeneID:1252823" regulatory 1384419..1384424 /regulatory_class="ribosome_binding_site" /gene="astA" /locus_tag="STM1304" /note="putative RBS for astD; RegulonDB:STMS1H001554" CDS 1384433..1385911 /gene="astD" /locus_tag="STM1305" /EC_number="1.2.1.-" /note="similar to E. coli putative aldehyde dehydrogenase (AAC74816.1); Blastp hit to AAC74816.1 (492 aa), 83% identity in aa 1 - 487" /codon_start=1 /transl_table=11 /product="succinylglutamate-semialdehyde dehydrogenase" /protein_id="NP_460271.1" /db_xref="GI:16764656" /db_xref="GeneID:1252823" /translation="MTLWINGDWITGQGERRRKTNPVSAEILWQGNDANAAQVAEACQ AARAAFPRWARQPFAARQAIVEKFAALLEAHKAELTEVIARETGKPRWEAATEVTAMI NKIAISIKAYHARTGAQKSELVDGAATLRHRPHGVLAVFGPYNFPGHLPNGHIVPALL AGNTLIFKPSELTPWTGETVIKLWERAGLPAGVLNLVQGGRETGQALSSLDDLDGLLF TGSASTGYQLHRQLSGQPEKILALEMGGNNPLIIEDAANIDAAVHLTLQSAFITAGQR CTCARRLLVKQGAQGDAFLARLVDVAGRLQPGRWDDDPQPFIGGLISAQAAQHVMEAW RQREALGGRTLLAPRKVKEGTSLLTPGIIELTGVADVPDEEVFGPLLNVWRYAHFDEA IRLANNTRFGLSCGLVSTDRAQFEQLLLEARAGIVNWNKPLTGAASTAPFGGVGASGN HRPSAWYAADYCAWPMASLESPELTLPATLSPGLDFSRREAV" gene 1385900..1387251 /gene="astB" /locus_tag="STM1306" /db_xref="GeneID:1252824" regulatory 1385900..1385905 /regulatory_class="ribosome_binding_site" /gene="astB" /locus_tag="STM1306" /note="putative RBS for astB; RegulonDB:STMS1H001555" CDS 1385908..1387251 /gene="astB" /locus_tag="STM1306" /note="similar to E. coli orf, hypothetical protein (AAC74815.1); Blastp hit to AAC74815.1 (447 aa), 85% identity in aa 1 - 447" /codon_start=1 /transl_table=11 /product="N-succinylarginine dihydrolase" /protein_id="NP_460272.1" /db_xref="GI:16764657" /db_xref="GeneID:1252824" /translation="MTAHEVNFDGLVGLTHHYAGLSFGNEASTRHRFQVSNPRLAVKQ GLLKMKALADAGFPQAVIPPHERPFIPALRQLGFTGSDEQILDKVARQAPRWLSSVSS ASPMWVANAATVCPSADALDGKVHLTVANLNNKFHRALEAPVTEALLRAIFRDESQFS VHSALPQVALLGDEGAANHNRLGGEYGSAGVQLFVYGREEENEIRPARYPARQSREAS EAVARLNQVNPQQVIFAQQNPEVIDQGVFHNDVIAVSNRQVLFCHEAAFARQKVLINQ LRTRVDGFMAIEVPAGEVSVSDAVATYLFNSQLLSRNDGLMLLVLPRECQDHVGVWRY LNKLVAEDNPISAMQVFDLRESMANGGGPACLRLRVVLTEEERRAVNPAVMMNDALFT ALNAWADRYYRDRLTAADLADPLLLREGREALDVLTRLLDLGSVYPFQQTGAADG" gene 1387231..1388212 /gene="astE" /locus_tag="STM1307" /db_xref="GeneID:1252825" regulatory 1387231..1387236 /regulatory_class="ribosome_binding_site" /gene="astE" /locus_tag="STM1307" /note="putative RBS for astE; RegulonDB:STMS1H001556" CDS 1387244..1388212 /gene="astE" /locus_tag="STM1307" /EC_number="3.1.-.-" /note="similar to E. coli orf, hypothetical protein (AAC74814.1); Blastp hit to AAC74814.1 (322 aa), 70% identity in aa 1 - 321" /codon_start=1 /transl_table=11 /product="succinylglutamate desuccinylase" /protein_id="NP_460273.1" /db_xref="GI:16764658" /db_xref="GeneID:1252825" /translation="MDNFLALTLSGTTPRVTQGKGAGFRWRWLGHGLLELTPDAPVDR ALILSAGIHGNETAPVEMLDKLLSALYSGSLTLTWRVLVVLGNPQALAAGIRYCHSDM NRMFGGRWQSFAESDETRRARELELSLETFFSSGQARVRWHLDLHTAIRGSHHLRFGV LPQRDRPWETDFLAWLGAAGLEALVFHQAPGGTFTHFSSEHFGALSCTLELGKALPFR QNDLTQFNVTSQALSALLSGVETSTSFSPPLRYRVVSQITRHSDKFALYMDAQTLNFT AFAKGTLLAEEGDKRVTVTHDVEYVLFPNPSVACGLRAGLMLERLP" gene 1388532..1389033 /gene="spy" /locus_tag="STM1308" /db_xref="GeneID:1252826" regulatory 1388532..1388537 /regulatory_class="ribosome_binding_site" /gene="spy" /locus_tag="STM1308" /note="putative RBS for spy; RegulonDB:STMS1H001557" CDS 1388548..1389033 /gene="spy" /locus_tag="STM1308" /note="similar to E. coli periplasmic protein related to spheroblast formation (AAC74813.1); Blastp hit to AAC74813.1 (161 aa), 89% identity in aa 1 - 161" /codon_start=1 /transl_table=11 /product="ATP-independent periplasmic protein-refolding chaperone" /protein_id="NP_460274.1" /db_xref="GI:16764659" /db_xref="GeneID:1252826" /translation="MRKLTALFVASTLAMGAANLAHAAETTTAAPADAKPMMQHKGKF GPHHDMMFKNLNLTDAQKQQIRDIMKAQREQMKRPLLEERRAMHDIIASDTFDKAKAE AQITKMEAQRKANMLAHMETQNKIYNVLTPEQKKQYNANFEKRLTERPAQEGKMPAAA E" gene complement(1389108..1390016) /locus_tag="STM1309" /db_xref="GeneID:1252827" CDS complement(1389108..1390016) /locus_tag="STM1309" /note="similar to E. coli putative excinuclease subunit (AAC74811.1); Blastp hit to AAC74811.1 (295 aa), 80% identity in aa 1 - 286" /codon_start=1 /transl_table=11 /product="putative nuclease subunit of the excinuclease complex" /protein_id="NP_460275.1" /db_xref="GI:16764660" /db_xref="GeneID:1252827" /translation="MNNQLTEITVVRRQSAPRLEFEAAAIYEYPEHLRPFLSEAPALP GVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDEATMLRQARRISWICTAGEMGALL LEARLIKEQQPLFNKRLRRNRQLCSLQLSEQKIEVVSARSVDFSHEPNLFGLFANRRA ALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQAHFLRLQAS LERLRVVCWPWKGAIALKESRPQMTQFHIINNWLWLGAVPSLDEAATLVRTPAGFDQD GYKILCKPLMSGQYEIIELHTDCRQS" gene complement(1390110..1390948) /gene="nadE" /locus_tag="STM1310" /db_xref="GeneID:1252828" CDS complement(1390110..1390937) /gene="nadE" /locus_tag="STM1310" /EC_number="6.3.5.1" /note="prefers NH3 over glutamine; similar to E. coli NAD synthetase, prefers NH3 over glutamine (AAC74810.1); Blastp hit to AAC74810.1 (275 aa), 89% identity in aa 1 - 275" /codon_start=1 /transl_table=11 /product="NAD(+) synthase" /protein_id="NP_460276.1" /db_xref="GI:16764661" /db_xref="GeneID:1252828" /translation="MTLQQEIIQALGAKPHINPEEEIRRSVDFLKAYLKTYPFLKSLV LGISGGQDSTLAGKLSQMAIAELREETGDNALQFIAVRLPYGVQADEQDCQDAIAFIQ PDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTHGVVVGT DHAAEAITGFFTKYGDGGTDINPLHRLNKRQGKQLLAALGCPEHLYKKVPTADLEDDR PSLPDEAALGVTYDNIDDYLEGKTLDPAIAKTIEGWYVKTEHKRRLPITVFDDFWKR" regulatory complement(1390943..1390948) /regulatory_class="ribosome_binding_site" /gene="nadE" /locus_tag="STM1310" /note="putative RBS for nadE; RegulonDB:STMS1H001558" gene 1391028..1391497 /gene="osmE" /locus_tag="STM1311" /db_xref="GeneID:1252829" regulatory 1391028..1391036 /regulatory_class="minus_35_signal" /gene="osmE" /locus_tag="STM1311" /note="putative -35_signal for osmE; RegulonDB:STMLTH004482" regulatory 1391052..1391060 /regulatory_class="minus_10_signal" /gene="osmE" /locus_tag="STM1311" /note="putative -10_signal for osmE; RegulonDB:STMLTH004482" protein_bind 1391135..1391149 /gene="osmE" /locus_tag="STM1311" /note="putative binding site for IHF, RegulonDB: STMS1H000219" /bound_moiety="IHF" regulatory 1391145..1391150 /regulatory_class="ribosome_binding_site" /gene="osmE" /locus_tag="STM1311" /note="putative RBS for osmE; RegulonDB:STMS1H001559" CDS 1391156..1391497 /gene="osmE" /locus_tag="STM1311" /note="similar to E. coli activator of ntrL gene (AAC74809.1); Blastp hit to AAC74809.1 (112 aa), 96% identity in aa 1 - 112" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_460277.1" /db_xref="GI:16764662" /db_xref="GeneID:1252829" /translation="MNKNVAGILSAAAVMTMLAGCTAYDRTKDQFVEPVVKDVKKGMS RAQVAQIAGKPSSEVSMIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCA EYDTDPQAPKQ" gene 1391785..1392118 /gene="celA" /locus_tag="STM1312" /db_xref="GeneID:1252830" regulatory 1391785..1391790 /regulatory_class="ribosome_binding_site" /gene="celA" /locus_tag="STM1312" /note="putative RBS for celA; RegulonDB:STMS1H001560" CDS 1391798..1392118 /gene="celA" /locus_tag="STM1312" /EC_number="2.7.1.191" /note="similar to E. coli PEP-dependent phosphotransferase enzyme IV for cellobiose, arbutin, and salicin (AAC74808.1); Blastp hit to AAC74808.1 (106 aa), 96% identity in aa 1 - 106" /codon_start=1 /transl_table=11 /product="PTS sugar transporter subunit IIB" /protein_id="NP_460278.1" /db_xref="GI:16764663" /db_xref="GeneID:1252830" /translation="MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLA GEKGPAADVVLLGPQIAYMLPEIQRLLPGKPVEVIDSMLYGKVDGLGVLKAAVAAIKK AAAN" gene 1392187..1393559 /gene="celB" /locus_tag="STM1313" /db_xref="GeneID:1252831" regulatory 1392187..1392192 /regulatory_class="ribosome_binding_site" /gene="celB" /locus_tag="STM1313" /note="putative RBS for celB; RegulonDB:STMS1H001561" CDS 1392201..1393559 /gene="celB" /locus_tag="STM1313" /note="similar to E. coli PEP-dependent phosphotransferase enzyme II for cellobiose, arbutin, and salicin (AAC74807.1); Blastp hit to AAC74807.1 (452 aa), 94% identity in aa 1 - 452" /codon_start=1 /transl_table=11 /product="PTS N,N'-diacetylchitobiose transporter subunit IIC" /protein_id="NP_460279.1" /db_xref="GI:16764664" /db_xref="GeneID:1252831" /translation="MSNVIASLEKVLLPFAVKIGKQPHVNAIKNGFIRLMPLTLAGAM FVLINNVFLSFGEGSFFYSMGIRLDASTIETLNGLKGIGGNVYNGTLGIMSLMAPFFI GMALAEERKVDALAAGLLSVAAFMTVTPYSVGEAYAVGANWLGGANIISGIIIGLVVA EMFTFIVRRNWVIKLPDSVPASVSRSFSALIPGFIILSIMGIISWALSNYGSNFHQII MDTISTPLASLGSVVGWAYVIFVPLLWFFGIHGSLALTALDSGIMTPWALENISIYQQ YGSVDAALEAGKTFHIWAKPMLDSYIFLGGSGATLGLIIAIFLASRRADYRQVAKLAL PSGIFQINEPILFGLPIIMNPVMFIPFILVQPILAAITLVAYYLGIIPPITNIAPWTM PTGLGAFFNTNGSVAALLVALFNLAVATLIYLPFVVVANKAQNAIEQEESEEDIANAL KF" gene 1393599..1393957 /gene="celC" /locus_tag="STM1314" /db_xref="GeneID:1252832" regulatory 1393599..1393604 /regulatory_class="ribosome_binding_site" /gene="celC" /locus_tag="STM1314" /note="putative RBS for celC; RegulonDB:STMS1H001562" CDS 1393610..1393957 /gene="celC" /locus_tag="STM1314" /EC_number="2.7.1.191" /note="similar to E. coli PEP-dependent phosphotransferase enzyme III for cellobiose, arbutin, and salicin (AAC74806.1); Blastp hit to AAC74806.1 (116 aa), 87% identity in aa 1 - 115" /codon_start=1 /transl_table=11 /product="PTS N N'-diacetylchitobiose transporter subunit IIA" /protein_id="NP_460280.1" /db_xref="GI:16764665" /db_xref="GeneID:1252832" /translation="MFDLENVVDNQTAAEELEEVVMGLIINSGQARSLAYGALRKAKE GDFEAAKAMMDQSRIALNEAHLVQTKLIEGDQGEGKMKVSLVLVHAQDHLMTSMLARE LIAELIELHEKLK" gene 1393958..1394810 /gene="celD" /locus_tag="STM1315" /db_xref="GeneID:1252833" regulatory 1393958..1393963 /regulatory_class="ribosome_binding_site" /gene="celD" /locus_tag="STM1315" /note="putative RBS for celD; RegulonDB:STMS1H001563" CDS 1393968..1394810 /gene="celD" /locus_tag="STM1315" /note="AraC/XylS family; similar to E. coli negative transcriptional regulator of cel operon (AAC74805.1); Blastp hit to AAC74805.1 (280 aa), 85% identity in aa 1 - 280" /codon_start=1 /transl_table=11 /product="transcriptional repressor of cel operon" /protein_id="NP_460281.1" /db_xref="GI:16764666" /db_xref="GeneID:1252833" /translation="MMQLQVNATEIKTVYEQQLFNGKNFHVFIYNKTESVTGLHQHDY YEFTLVLTGRYYQEINGKRVLLERGDFVFIPVGSNHQSFYEFGATRILNVGISKRFFE QHYLPLLPFCFVASQVYRANSTFLTYIETVIASLNFRGNGLDEFIEVVTFYIINRLRH YREEQVYDDIPQWLKATVEIMHDKTQFGEHALENMVRLSAKSQEYLTRATRRYYSKTP MQIINEIRINFAKKQLEMTNYSVTDIAYEAGYSSPSLFIKTFKKMTSFTPNSYRKRLT EINE" gene 1394923..1396290 /gene="celF" /locus_tag="STM1316" /db_xref="GeneID:1252834" regulatory 1394923..1394928 /regulatory_class="ribosome_binding_site" /gene="celF" /locus_tag="STM1316" /note="putative RBS for celF; RegulonDB:STMS1H001564" CDS 1394935..1396290 /gene="celF" /locus_tag="STM1316" /EC_number="3.2.1.86" /note="similar to E. coli phospho-beta-glucosidase; cryptic (AAC74804.1); Blastp hit to AAC74804.1 (450 aa), 90% identity in aa 1 - 450" /codon_start=1 /transl_table=11 /product="6-phospho-beta-glucosidase" /protein_id="NP_460282.1" /db_xref="GI:16764667" /db_xref="GeneID:1252834" /translation="MSQKLKVVTIGGGSSYTPELLEGFIKRYHELPVTELWLVDVEDG KEKLGIIYDLCQRMIDKAGVPLKLYKTLDRREALKGANFVTTQLRVGQLKARELDERI PLSHGYLGQETNGAGGLFKGLRTIPVIFDIIKDVEELCPNAWVINFTNPAGMVTEAVY RHTNFKKFIGVCNIPVGMKMFIHDVLALNENDDLSIDLFGLNHMVFIKDVLVNGTSRF AELLDGVASGQLKASTVKNIFDLPFSEGLIRSLNMLPCSYLLYYFKQKEMLAIEMGEY YKGGARAQVVQKVEKQLFDLYKNPELNVKPKELEQRGGAYYSDAACEVINAIYNDKQT EHYVNIPHHGHVENIPADWAVEMTCILGRNGATPHPRITRFDEKVLGLIHTIKGFEVA ASNAALSGNFNDVLLALNLSPLVHSDRDAEVLARELILAHEKWLPNFAACIEALKGKH H" gene 1396293..1397061 /gene="celG" /locus_tag="STM1317" /db_xref="GeneID:1252835" regulatory 1396293..1396298 /regulatory_class="ribosome_binding_site" /gene="celG" /locus_tag="STM1317" /note="putative RBS for celG; RegulonDB:STMS1H001565" CDS 1396303..1397061 /gene="celG" /locus_tag="STM1317" /note="similar to E. coli orf, hypothetical protein (AAC74803.1); Blastp hit to AAC74803.1 (249 aa), 76% identity in aa 1 - 249" /codon_start=1 /transl_table=11 /product="carbohydrate deacetylase" /protein_id="NP_460283.1" /db_xref="GI:16764668" /db_xref="GeneID:1252835" /translation="MERVLIVNADDFGLSKGQNYGIVEAYRNGVVTSTTALVNGEAID HAAQLSRELPALGVGMHFVLTLGKPVSEMPGLTRDGLLGKWIWQMAEEDTLPLDEIAH ELACQYQRFIDVFGSEPTHLDSHHHVHMFPQIFPIVARFAAQRGIALRIDRQTVLNAD DLPSDLRSTQGFSSEFYGEEITEACFLRILDASAHRGEASLEVMCHPAFVDNIIRQSA YCYPRLTELEVLTSASLKAAIAERGYRPGSFLDI" gene complement(1397105..1399372) /gene="katE" /locus_tag="STM1318" /db_xref="GeneID:1252836" CDS complement(1397105..1399357) /gene="katE" /locus_tag="STM1318" /EC_number="1.11.1.6" /note="RpoS dependent; similar to E. coli catalase; hydroperoxidase HPII(III) (AAC74802.1); Blastp hit to AAC74802.1 (753 aa), 88% identity in aa 4 - 753" /codon_start=1 /transl_table=11 /product="catalase HPII" /protein_id="NP_460284.1" /db_xref="GI:16764669" /db_xref="GeneID:1252836" /translation="MSHNEKSPHQSPVHDTRESQPGLDSLAPSDGSHRPTPETTPPGA QPTAPGSLKAPETANDKLTALDAFRKGSENYALTTNQGVRIADDQNSLRAGSRGPTLL EDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKDLSDITKAAFLCDPQKITPVF VRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNTPIFFIQDAHKFPDFVHAV KPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHTFRL INAQGKATFVRFHWKPLAGKASLVWDESQKLTGRDPDFHRRDLWEAIEAGDFPEYELG LQLIAEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFFAENEQAAFHPGH IVPGIDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYHNFQRDGMHRMDI DTNPANYEPNSINDNWPRETPPAPKRGGFESYQERVDGNKIRERSPSFGEYYSHPRLF WLSQTPIEQQHIIDAFSFELGKVARAYIRERVVDQLAHIDVTLAQGVAHNLGFALTHE QTQIAPPPDVNGLKKDPALSLYAVPDGDVKGRVVAILLNDKVNAAELLTILQALKAKG VHAKLLYSRMGEVTADDGSTLTIAATFAGAPSLTVDAVIVPCGNIADIESCGDARYYL LEAYKHLKPIALAGDARRFKALLNIDSQGEEGLVEADNVDHHFMDTLLTLMAAHRVWS RAGKINAIPA" regulatory complement(1399367..1399372) /regulatory_class="ribosome_binding_site" /gene="katE" /locus_tag="STM1318" /note="putative RBS for katE; RegulonDB:STMS1H001566" gene 1399662..1399964 /gene="cedA" /locus_tag="STM1319" /db_xref="GeneID:1252837" regulatory 1399662..1399670 /regulatory_class="minus_35_signal" /gene="cedA" /locus_tag="STM1319" /note="putative -35_signal for cedA; RegulonDB:STMLTH004483" regulatory 1399689..1399697 /regulatory_class="minus_10_signal" /gene="cedA" /locus_tag="STM1319" /note="putative -10_signal for cedA; RegulonDB:STMLTH004483" regulatory 1399711..1399716 /regulatory_class="ribosome_binding_site" /gene="cedA" /locus_tag="STM1319" /note="putative RBS for cedA; RegulonDB:STMS1H001567" CDS 1399722..1399964 /gene="cedA" /locus_tag="STM1319" /note="affects inhibition after overreplication of chromosome in dnaAcos mutants; similar to E. coli orf, hypothetical protein (AAC74801.1); Blastp hit to AAC74801.1 (87 aa), 82% identity in aa 8 - 87" /codon_start=1 /transl_table=11 /product="cell division modulator" /protein_id="NP_460285.1" /db_xref="GI:16764670" /db_xref="GeneID:1252837" /translation="MMKPLRQQNRQIISYIPRVEPAPPEHAIKMDTFRDVWILRGKYV AFVLTRESFQRSPAFSVPESAQRWANQVRQENEIAD" gene complement(1400066..1401470) /gene="ydjN" /locus_tag="STM1320" /db_xref="GeneID:1252838" CDS complement(1400066..1401457) /gene="ydjN" /locus_tag="STM1320" /note="putative domain shared with transporter; similar to E. coli part of a kinase (AAC74799.1); Blastp hit to AAC74799.1 (463 aa), 96% identity in aa 1 - 462" /codon_start=1 /transl_table=11 /product="L-cystine transporter" /protein_id="NP_460286.1" /db_xref="GI:16764671" /db_xref="GeneID:1252838" /translation="MNFPLIANIAVFVILLFVLAQARHKQWSLAKKVLVGLVMGVVFG LALHTIYGADSQVLKDSIQWFNIVGNGYVQLLQMIVMPLVFASILSAVARLHNASQLG KISFLTIGTLLFTTLIAALVGVLVTNLFGLTAEGLVQGGAETARLNAIETSYVGKVAD LSVPQLVLSFVPKNPFADLTGANPTSIISVVIFAAFLGVAALKLLKDDAPKGERVLVA IDTLQSWVMKLVRLVMQLTPYGVLALMTKVVAGSNLQDIIKLGSFVVASYLGLAIMFV VHGILLGVNGISPLKYFRKVWPVLTFAFTSRSSAASIPLNVEAQTRRLGVPESIASFA ASFGATIGQNGCAGLYPAMLAVMVAPTVGINPLDPVWIATLVGIVTVSSAGVAGVGGG ATFAALIVLPAMGLPVTLVALLISVEPLIDMGRTALNVSGSMTAGTLTSQWLKQTDKT ILDSEEDAELAHR" regulatory complement(1401465..1401470) /regulatory_class="ribosome_binding_site" /gene="ydjN" /locus_tag="STM1320" /note="putative RBS for ydjN; RegulonDB:STMS1H001568" gene complement(1401594..1402193) /gene="ydjM" /locus_tag="STM1321" /db_xref="GeneID:1252839" CDS complement(1401594..1402193) /gene="ydjM" /locus_tag="STM1321" /note="putative SOS response; similar to E. coli orf, hypothetical protein (AAC74798.1); Blastp hit to AAC74798.1 (200 aa), 86% identity in aa 1 - 199" /codon_start=1 /transl_table=11 /product="LexA regulated gene" /protein_id="NP_460287.3" /db_xref="GI:1109557618" /db_xref="GeneID:1252839" /translation="MGFIMTAEGHLLFSIASAVFAKNAELTPVLAHGDWWHIIPSAIL TCLLPDIDHPKSFLGQRLKWVSKPIARAFGHRGFTHSLLAVFALLATFYLKVPDTWII PADALQGMVLGYLSHIVADMLTPAGVPLLWPCRWRFRLPILAPRKGNQLERFLCMALF AWAVWMPQSMPENNVIRWSSQMITILQMQFNRFINHQID" gene complement(1402331..1403013) /gene="yniC" /locus_tag="STM1322" /db_xref="GeneID:1252840" CDS complement(1402331..1402999) /gene="yniC" /locus_tag="STM1322" /note="similar to E. coli putative phosphatase (AAC74797.1); Blastp hit to AAC74797.1 (222 aa), 90% identity in aa 1 - 222" /codon_start=1 /transl_table=11 /product="2-deoxyglucose-6-phosphatase" /protein_id="NP_460288.1" /db_xref="GI:16764673" /db_xref="GeneID:1252840" /translation="MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDITRRH ELPDTLGLRIDMVVDLWFAQQPWNGPDRQEVTNRVIARAITLIEETRPLLPGVREAVA LCKAQGLLVGLASASPLHMLEKVLTMFELRDSFDALASAEKLPYSKPHPQVYLDCAAK LGVDPLTCVALEDSVNGLIAAKAARMRAIVVPAEENQPDPRFALANVKLNSLTELTAA HLLG" regulatory complement(1403008..1403013) /regulatory_class="ribosome_binding_site" /gene="yniC" /locus_tag="STM1322" /note="putative RBS for yniC; RegulonDB:STMS1H001569" gene 1403137..1403684 /gene="yniB" /locus_tag="STM1323" /db_xref="GeneID:1252841" regulatory 1403137..1403142 /regulatory_class="ribosome_binding_site" /gene="yniB" /locus_tag="STM1323" /note="putative RBS for yniB; RegulonDB:STMS1H001570" CDS 1403148..1403684 /gene="yniB" /locus_tag="STM1323" /note="similar to E. coli orf, hypothetical protein (AAC74796.1); Blastp hit to AAC74796.1 (178 aa), 83% identity in aa 1 - 178" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460289.1" /db_xref="GI:16764674" /db_xref="GeneID:1252841" /translation="MTYQQAGRIAILKRVVGWVIFIPALLSTLISVLKFMYAHSEKQE GINAVMLDFTHVMIDMMRVNTPFLNVFWYNSPTPNFQGSLNIGFWLIFILIFVGLAMQ DSGARMSRQSRFLREGVEDQLILEKAKGAEGLTREQIESRIVVPHHTIFLQFFPLYIL PVIIIVLGYFFFSLLGFM" gene complement(1403727..1404602) /locus_tag="STM1324" /db_xref="GeneID:1252842" CDS complement(1403727..1404587) /locus_tag="STM1324" /note="similar to E. coli orf, hypothetical protein (AAC74795.1); Blastp hit to AAC74795.1 (286 aa), 92% identity in aa 1 - 285" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460290.1" /db_xref="GI:16764675" /db_xref="GeneID:1252842" /translation="MWQAISRLLSEQVGEGEIELRNELPGGEVHAAWHLRYAGHDFFV KCDEREMLRGFTAEADQLELLSRSKTVVVPKVWAVGSDRDYSFLVMDYLSPRPLDAHN AFILGQQLARLHQWSDQPQFGLDFDNALSTTPQPNTWQRRWSTFFAEQRIGWQLELAA EKGITFGNIDAIVEHVQQRLASHQPQPSLLHGDLWSANCALGPDGPYIFDPACYWGDR ECDLAMLPLHTDQPPQIYDGYQSVSPLPLDFLDRQPIYQLYTLLNRARLFGGQHLATA QKAMDRLLAV" regulatory complement(1404597..1404602) /regulatory_class="ribosome_binding_site" /locus_tag="STM1324" /note="putative RBS for STM1324; RegulonDB:STMS1H001571" gene complement(1404694..1404994) /gene="ydiZ" /locus_tag="STM1325" /db_xref="GeneID:1252843" CDS complement(1404694..1404984) /gene="ydiZ" /locus_tag="STM1325" /note="similar to E. coli orf, hypothetical protein (AAC74794.1); Blastp hit to AAC74794.1 (96 aa), 69% identity in aa 1 - 94" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460291.1" /db_xref="GI:16764676" /db_xref="GeneID:1252843" /translation="MASGDITRYVITVTFHEDSLTEINELNNHLTRSGFLLTLTDDEG DVHELGTNTFGFVSAQSADEIKALVAGLAKSALDKDVDITVATWEAWSKNAQ" regulatory complement(1404989..1404994) /regulatory_class="ribosome_binding_site" /gene="ydiZ" /locus_tag="STM1325" /note="putative RBS for ydiZ; RegulonDB:STMS1H001572" gene complement(1405081..1406025) /gene="pfkB" /locus_tag="STM1326" /db_xref="GeneID:1252844" CDS complement(1405081..1406013) /gene="pfkB" /locus_tag="STM1326" /EC_number="2.7.1.11" /note="similar to E. coli 6-phosphofructokinase II; suppressor of pfkA (AAC74793.1); Blastp hit to AAC74793.1 (309 aa), 92% identity in aa 1 - 308" /codon_start=1 /transl_table=11 /product="6-phosphofructokinase II" /protein_id="NP_460292.1" /db_xref="GI:16764677" /db_xref="GeneID:1252844" /translation="MVRIYTLTLAPSLDSATITPQIYPEGKLRCSAPVFEPGGGGINV ARAIAHLGGTATAIFPAGGATGEHLVALLADENVPVSTVDAKDWTRQNLHVHVESSGE QYRFVMPGATLDDDEFRQLEEQVLEIESGAILVISGSLPPGVKVEKLTQLISAAQKQG IRCIIDSSGDALTAALALGDIELVKPNLKELSALVNRDLTQPDDVRKAAQELVQSGKA RRVVVSLGPQGALGIDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAQDASLEEMV RFGVAAGSAATLNQGTRLCSRDDTQKIYAYLSAQ" regulatory complement(1406020..1406025) /regulatory_class="ribosome_binding_site" /gene="pfkB" /locus_tag="STM1326" /note="putative RBS for pfkB; RegulonDB:STMS1H001573" gene 1406287..1407060 /gene="ydiY" /locus_tag="STM1327" /db_xref="GeneID:1252845" regulatory 1406287..1406292 /regulatory_class="ribosome_binding_site" /gene="ydiY" /locus_tag="STM1327" /note="putative RBS for ydiY; RegulonDB:STMS1H001574" CDS 1406302..1407060 /gene="ydiY" /locus_tag="STM1327" /note="similar to E. coli orf, hypothetical protein (AAC74792.1); Blastp hit to AAC74792.1 (252 aa), 88% identity in aa 1 - 252" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460293.1" /db_xref="GI:16764678" /db_xref="GeneID:1252845" /translation="MKLLKAVPAVVMLAGGVFASLYAAADDSVFTVMDDPSTAKKPFE GNLNAGYLAQSGNTKSSSLTADTAMTWYGQRTAWSLWGNASNTSSNDERSSEKYAVGA RNRFNMTDYDYTFGQASWLTDRFNGYRQRDVLTAGYGRQFLNGPVHSFRFEFGPGVRY DEHTDDTTETQPLGYASGSYAWQLTDNAKFTQGVSVFGAEDTTLNSETALNVAINEHF GLKVGYNLTWNSQPPESAPEHTDRRTTVTLGYKM" gene complement(1407109..1408075) /locus_tag="STM1328" /db_xref="GeneID:1252846" CDS complement(1407109..1408068) /locus_tag="STM1328" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460294.1" /db_xref="GI:16764679" /db_xref="GeneID:1252846" /translation="MNKYSYCATMIAAILSTTTMANASSLAISVANDDAGIFQPSLNA LYGHPAADRGDYTAGLFLGYSHDLTDASQLSFHIAQDIYSPSGANKRKPEAVKGDRAF SAFLHTGLEWNSLATNWLRYRLGTDIGVIGPDAGGQEVQNRAHRIIGAEKYPAWQDQI ENRYGYTAKGMVSLTPAIDILGVNVGFYPEVSAVGGNLFQYLGYGATVALGNDKTFNS DNGFGLLSRRGLIHTQKEGLIYKVFAGVERREVDKNYTLQGKTLQTKMETVDINKTVD EYRVGATIGYSPVAFSLSLNKVTSEFRTGDDYSYINGDITFFF" regulatory complement(1408070..1408075) /regulatory_class="ribosome_binding_site" /locus_tag="STM1328" /note="putative RBS for STM1328; RegulonDB:STMS1H001575" gene 1408204..1408525 /locus_tag="STM1329" /db_xref="GeneID:1252847" regulatory 1408204..1408209 /regulatory_class="ribosome_binding_site" /locus_tag="STM1329" /note="putative RBS for STM1329; RegulonDB:STMS1H001576" CDS 1408211..1408525 /locus_tag="STM1329" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460295.1" /db_xref="GI:16764680" /db_xref="GeneID:1252847" /translation="MLKNGVEKHASDIIEYPFFIRYLSARNYWLHDYAYNTMFFGINM NITLYSFELIFYDGFDVYLLLIFTVIVLSLMMRISNGCQGNITKLLLSELLGQLLLRK KK" gene 1408515..1409376 /locus_tag="STM1330" /db_xref="GeneID:1252848" regulatory 1408515..1408520 /regulatory_class="ribosome_binding_site" /locus_tag="STM1329" /note="putative RBS for STM1330; RegulonDB:STMS1H001577" CDS 1408522..1409376 /locus_tag="STM1330" /codon_start=1 /transl_table=11 /product="endonuclease" /protein_id="NP_460296.1" /db_xref="GI:16764681" /db_xref="GeneID:1252848" /translation="MNKTINLLKLLPVVLLSACTTSYPPQDTTSAPELPHRNVLVQQP DNCSVGCPQGGSQQTIYRHVYTLNNNSVTKFANWVAYSVTKTSQASGRPRNWAQDPDL PPSDTLAPSAYKNAHTLLKVDRGHQAPLAGLGGVSDWPSLNYLSNITPQKSALNQGAW AALENRVRELAKQADVSVVHVVTGPLFERHIATLPEDATVEIPSGYWKVLFTGMAPSK SEGNYAAFIMDQNTPRSANFCDYQVTVEAIEHKAKPVLTLWSALPEAVASEVKTTKGS LAQKLGCR" gene 1409545..1409755 /locus_tag="STM1331" /db_xref="GeneID:1252849" regulatory 1409545..1409550 /regulatory_class="ribosome_binding_site" /locus_tag="STM1331" /note="putative RBS for STM1331; RegulonDB:STMS1H001578" CDS 1409549..1409755 /locus_tag="STM1331" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_447756.1" /db_xref="GI:1109557619" /db_xref="GeneID:1252849" /translation="MDTQLTVNKFIFSLYVILRNKYNPSFTSILVRLNLFHQFRVITG NSGYICFIPFYIDPFRAVRCTYLI" gene complement(1410078..1411306) /gene="rfc" /locus_tag="STM1332" /db_xref="GeneID:1252850" CDS complement(1410078..1411301) /gene="rfc" /locus_tag="STM1332" /note="O-antigen polymerase (SW:RFC_SALTY)" /codon_start=1 /transl_table=11 /product="polymerase" /protein_id="NP_460298.1" /db_xref="GI:16764683" /db_xref="GeneID:1252850" /translation="MLIISYIALCLLFIVYLYTLSVRIEGKIINVMVPYLIITVPTLY VFEGIFVYLSEVQNYTVEYLFFYTCYITYIASFVISYLYTQRKPIYNKSNTKNKPRYV FTSLLFTFLAFIIYLPVLMEFREYILSPRRIYELTRTGYGIYFYPSLMFSLVASICAF FTYKKSKLFCISIVLFNCILIFLHGNKGPIFSIFIAFILYLSYIENKKIKFMFLVKSF AVIAVIVTAFFAYTFTDGNPIENMANYSDYTRNAVLVASSNFDFMYGKLLMESEVYSR IPRAIWPDKPEDFGALYLAKVFFPDAFYRNQGAPAFGYGELYADFGLFTPVWLVISGV FKGVLAKYFSNKTQETKSAHYFIMFLFCIGISVIPVSMGWLFPEHLMIAFMVYIASSF VFSEHIRFVLLRNNK" regulatory complement(1411301..1411306) /regulatory_class="ribosome_binding_site" /gene="rfc" /locus_tag="STM1332" /note="putative RBS for rfc; RegulonDB:STMS1H001579" gene 1412182..1414121 /gene="thrS" /locus_tag="STM1333" /db_xref="GeneID:1252851" regulatory 1412182..1412187 /regulatory_class="ribosome_binding_site" /gene="thrS" /locus_tag="STM1333" /note="putative RBS for thrS; RegulonDB:STMS1H001580" CDS 1412193..1414121 /gene="thrS" /locus_tag="STM1333" /EC_number="6.1.1.3" /note="similar to E. coli threonine tRNA synthetase (AAC74789.1); Blastp hit to AAC74789.1 (642 aa), 96% identity in aa 1 - 642" /codon_start=1 /transl_table=11 /product="threonine--tRNA ligase" /protein_id="NP_460299.1" /db_xref="GI:16764684" /db_xref="GeneID:1252851" /translation="MPVITLPDGSQRHYDHPVSPMDVALDIGPGLAKATIAGRVNGEL VDASDLIENDATLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVVDNGF YYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHDARETFVKRGETYKVAIL DENIAHDDKPGLYHHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRI YGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRE LEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNC PGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQ IRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPDKRIGSDEMWDRAEADLAVALEENNI PFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPV MIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNITDSQSEYVNELTQKLQNAG IRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVNDV IEKLQQEIRSRSLQQLEE" gene 1414213..1414667 /gene="infC" /locus_tag="STM1334" /db_xref="GeneID:1252852" regulatory 1414213..1414218 /regulatory_class="ribosome_binding_site" /gene="infC" /locus_tag="STM1334" /note="putative RBS for infC; RegulonDB:STMS1H001581" CDS 1414233..1414667 /gene="infC" /locus_tag="STM1334" /note="translation initiation factor IF-3. (SW:IF3_SALTY)" /codon_start=1 /transl_table=11 /product="protein chain initiation factor IF-3" /protein_id="NP_460300.3" /db_xref="GI:1109557620" /db_xref="GeneID:1252852" /translation="MSLREALEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKS SKEQKKKQKVIQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQ QIGMEVLNRVKDDLQELAVVESFPTKIEGRQMIMVLAPKKKQ" gene 1414748..1414960 /gene="rpmI" /locus_tag="STM1335" /db_xref="GeneID:1252853" regulatory 1414748..1414753 /regulatory_class="ribosome_binding_site" /gene="rpmI" /locus_tag="STM1335" /note="putative RBS for rpmI; RegulonDB:STMS1H001582" CDS 1414763..1414960 /gene="rpmI" /locus_tag="STM1335" /note="similar to E. coli 50S ribosomal subunit protein A (AAC74787.1); Blastp hit to AAC74787.1 (65 aa), 100% identity in aa 1 - 65" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L35" /protein_id="NP_460301.1" /db_xref="GI:16764686" /db_xref="GeneID:1252853" /translation="MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHL RPKAMVSKGDLGLVIACLPYA" gene 1414998..1415367 /gene="rplT" /locus_tag="STM1336" /db_xref="GeneID:1252854" regulatory 1414998..1415003 /regulatory_class="ribosome_binding_site" /gene="rplT" /locus_tag="STM1336" /note="putative RBS for rplT; RegulonDB:STMS1H001583" CDS 1415011..1415367 /gene="rplT" /locus_tag="STM1336" /note="similar to E. coli 50S ribosomal subunit protein L20, and regulator (AAC74786.1); Blastp hit to AAC74786.1 (118 aa), 100% identity in aa 1 - 118" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L20" /protein_id="NP_460302.1" /db_xref="GI:16764687" /db_xref="GeneID:1252854" /translation="MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQ YAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFD KVAFTALVEKAKAALA" gene 1415659..1416652 /gene="pheS" /locus_tag="STM1337" /db_xref="GeneID:1252855" regulatory 1415659..1415664 /regulatory_class="ribosome_binding_site" /gene="pheS" /locus_tag="STM1337" /note="putative RBS for pheS; RegulonDB:STMS1H001584" CDS 1415669..1416652 /gene="pheS" /locus_tag="STM1337" /EC_number="6.1.1.20" /note="similar to E. coli phenylalanine tRNA synthetase, alpha-subunit (AAC74784.1); Blastp hit to AAC74784.1 (327 aa), 97% identity in aa 1 - 327" /codon_start=1 /transl_table=11 /product="phenylalanine--tRNA ligase subunit alpha" /protein_id="NP_460303.1" /db_xref="GI:16764688" /db_xref="GeneID:1252855" /translation="MSHLAELVANAAAAINQASDVAALDNVRVEYLGKKGHLTLQMTT LRDLPPEERPAAGAVINAAKEQVQQALNARKAELESAALNARLAAETIDISLPGRRIE NGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF DATRLLRTQTSGVQIRTMKAQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNI SFTNLKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVH PNVLRNVGIDPEIYSGFAFGMGMERLTMLRYGVTDLRSFFENDLRFLKQFK" gene 1416656..1419055 /gene="pheT" /locus_tag="STM1338" /db_xref="GeneID:1252856" regulatory 1416656..1416661 /regulatory_class="ribosome_binding_site" /gene="pheT" /locus_tag="STM1338" /note="putative RBS for pheT; RegulonDB:STMS1H001585" CDS 1416668..1419055 /gene="pheT" /locus_tag="STM1338" /EC_number="6.1.1.20" /note="phenylalanyl-tRNA synthetase beta chain. (SW:SYFB_SALTY)" /codon_start=1 /transl_table=11 /product="phenylalanine--tRNA ligase subunit beta" /protein_id="NP_460304.1" /db_xref="GI:16764689" /db_xref="GeneID:1252856" /translation="MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFNG VVVGEVVECAQHPNADKLRVTKVNVGGERLLDIVCGAPNCRQGLKVAVATIGAILPGD FKIKAAKLRGEPSEGMLCSFSELGISDDHSGIIELPADAPLGTDIREYLKLDDNTIEI SVTPNRADCLGIIGVARDVAVLNKAPLQEPEMAPVTATISDTLPITVEAADACPRYLG RVVKGINVNAPTPLWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIDGGI VVRMAKEGETVVLLDGSEATLNADTLVIADHHKALGIAGIFGGEHSGVNGETQNVLLE CAYFNPLSITGRARRHGLHTDASHRYERGVDPALQYKAIERATRLLLDICGGDAGPII DVSNEATLPKRATITLRRSKLDRLIGHHIADEQVSDILRRLGCEVTEGQDEWKAVAPT WRFDMEIEEDLVEEVARVYGYNNIPDEPIQAGLIMGTHREADLSLKRVKTMLNDKGYQ EVITYSFVDPKVQQLIHPGAEALLLPNPISVEMSAMRLSLWSGLLATVVYNQNRQQNR VRIFETGLRFVPDTQANLGIRQDLMLAGVICGNRYDEHWNLAKETVDFYDLKGDLEAV LDLTGKLGDIQFKAEMNPALHPGQSAAIYLKDERIGFIGVVHPELERKLDLNGRTLVF ELEWNKLADRIVPQAREISRFPANRRDIAVVVAENVPAADILSECKKVGVNQVVGVNL FDVYRGKGVAEGYKSLAISLILQDTNRTLEEEEIAATVAKCVEALKERFQASLRD" gene 1418921..1419359 /gene="himA" /locus_tag="STM1339" /db_xref="GeneID:1252857" regulatory 1418921..1418929 /regulatory_class="minus_35_signal" /gene="himA" /locus_tag="STM1339" /note="putative -35_signal for himA; RegulonDB:STMLTH004484" regulatory 1418945..1418953 /regulatory_class="minus_10_signal" /gene="himA" /locus_tag="STM1339" /note="putative -10_signal for himA; RegulonDB:STMLTH004484" regulatory 1419046..1419051 /regulatory_class="ribosome_binding_site" /gene="himA" /locus_tag="STM1339" /note="putative RBS for himA; RegulonDB:STMS1H001586" CDS 1419060..1419359 /gene="himA" /locus_tag="STM1339" /note="integration host factor alpha-subunit (IHF-alpha). (SW:IHFA_SALTY)" /codon_start=1 /transl_table=11 /product="integration host factor subunit alpha" /protein_id="NP_460305.1" /db_xref="GI:16764690" /db_xref="GeneID:1252857" /translation="MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQV KLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKEE" gene 1419553..1420542 /gene="btuC" /locus_tag="STM1340" /db_xref="GeneID:1252858" regulatory 1419553..1419558 /regulatory_class="ribosome_binding_site" /gene="btuC" /locus_tag="STM1340" /note="putative RBS for btuC; RegulonDB:STMS1H001587" CDS 1419562..1420542 /gene="btuC" /locus_tag="STM1340" /note="ABC superfamily (membrane); similar to E. coli vitamin B12 transport permease protein (AAC74781.1); Blastp hit to AAC74781.1 (326 aa), 91% identity in aa 1 - 326" /codon_start=1 /transl_table=11 /product="vitamin B12 ABC transporter permease BtuC" /protein_id="NP_460306.1" /db_xref="GI:16764691" /db_xref="GeneID:1252858" /translation="MLTFARQQQRRNVRWLLSLSLLVLLATLLSLCAGEQWIAPGDWL SARGELFVWQIRLPRTLAVLLVGAALALSGAVMQALFENPLAEPGLLGVSNGAGVGLI AAVLLGQGQLPGWALGLCAIAGALIITLILLRFARRHLSTSRLLLAGVALGIICSALM TWAIYFSTSFDLRQLMYWMMGGFGGVDWQQSWLMIALIPVLIWICCQSQPLNMLALGE TSARQLGLPLWFWRNLLVVATGWMVGVSVAMAGAIGFIGLVIPHILRLCGLTDHRVLL PGCALAGAIALLLADVVARLALASAELPIGVVTATLGAPVFIWLLLKSAR" gene 1420622..1421185 /gene="btuE" /locus_tag="STM1341" /db_xref="GeneID:1252859" regulatory 1420622..1420627 /regulatory_class="ribosome_binding_site" /gene="btuE" /locus_tag="STM1341" /note="putative RBS for btuE; RegulonDB:STMS1H001588" CDS 1420634..1421185 /gene="btuE" /locus_tag="STM1341" /note="ABC superfamily (binding protein); similar to E. coli vitamin B12 transport (AAC74780.1); Blastp hit to AAC74780.1 (183 aa), 85% identity in aa 1 - 183" /codon_start=1 /transl_table=11 /product="glutathione peroxidase" /protein_id="NP_460307.1" /db_xref="GI:16764692" /db_xref="GeneID:1252859" /translation="MQNSLLNTHVTTIDGEVTTLEKYAGKVLLIVNVASRCGLTPQYE QLENIQKAWADQGFVVLGFPCNQFMGQEPGSEEEIKTYCASTWGVTFPMFSKIDVNGD ARHPLYQKLIAAAPTAVAPEKSGFYERMVSKGRTPLYPDDILWNFEKFLVGRDGQVVQ RFSPDMTPEDPIVMESIKIALAK" gene 1421185..1421934 /gene="btuD" /locus_tag="STM1342" /db_xref="GeneID:1252860" CDS 1421185..1421934 /gene="btuD" /locus_tag="STM1342" /note="ABC superfamily (binding protein); similar to E. coli ATP-binding component of vitamin B12 transport system (AAC74779.1); Blastp hit to AAC74779.1 (249 aa), 80% identity in aa 1 - 247" /codon_start=1 /transl_table=11 /product="vitamin B12 ABC transporter ATP-binding protein BtuD" /protein_id="NP_460308.1" /db_xref="GI:16764693" /db_xref="GeneID:1252860" /translation="MSQLMQLKDVAESTRLGPLSGEVSAGEILHLVGPNGAGKSTLLA RMAGLTSGEGSIRFGGAPLEAWATATLAQHRAYLAQQQNPPFAMPVWHYLTLHQPDKT RTGQLNEVADMLGLGDKLGRSVNQLSGGEWQRVRLAAVVLQIHPDANPVGQLLLLDEP MNSLDVAQQNALDRVLHHLCQAGIAIVMSSHDLNHTLRHAHKAWLLKRGKLIACGRRE EVLTPSYLAQAYGLRFRRLDVEGHPMLISAT" gene 1421996..1422475 /gene="nlpC" /locus_tag="STM1343" /db_xref="GeneID:1252861" regulatory 1421996..1422001 /regulatory_class="ribosome_binding_site" /gene="nlpC" /locus_tag="STM1343" /note="putative RBS for nlpC; RegulonDB:STMS1H001589" CDS 1422011..1422475 /gene="nlpC" /locus_tag="STM1343" /note="similar to E. coli lipoprotein (AAC74778.1); Blastp hit to AAC74778.1 (154 aa), 86% identity in aa 1 - 154" /codon_start=1 /transl_table=11 /product="endopeptidase" /protein_id="NP_460309.1" /db_xref="GI:16764694" /db_xref="GeneID:1252861" /translation="MRFWLLVITALFLAGCSTHRAPAPNARLSDSITVIAGLNDQLQS WRGTPYRYGGMSRRGVDCSGFVVVTMRDKFDLQLPRDTREQSKIGTRIDKDELLPGDL VFFKTGSGESGLHVGIYDTNNEFIHASTSRGVMRSSLDNVYWRKNFWQARRI" gene 1422781..1423502 /gene="ydiV" /locus_tag="STM1344" /db_xref="GeneID:1252862" regulatory 1422781..1422786 /regulatory_class="ribosome_binding_site" /gene="ydiV" /locus_tag="STM1344" /note="putative RBS for ydiV; RegulonDB:STMS1H001590" CDS 1422789..1423502 /gene="ydiV" /locus_tag="STM1344" /note="similar to E. coli orf, hypothetical protein (AAC74777.1); Blastp hit to AAC74777.1 (237 aa), 52% identity in aa 5 - 237" /codon_start=1 /transl_table=11 /product="EAL domain-containing protein" /protein_id="NP_460310.1" /db_xref="GI:16764695" /db_xref="GeneID:1252862" /translation="MIASLDELYHSELFFLPVMDENARLVGLEIIATFAAEDGAVRMP TELVAPRLSVEEQYCLFVEKLALLETCQHFFIQHKLIAWLNLPPAISDLLLLDSELFS RAARFPFLELAINENYPGLNQGKNNETLANLAMHFPLMLANFGAGEASTKAIFDGLFK RVMLDKNFIQQRAEMISFEPFMHAIVAQISSSCESLMIAGIDTEAMFARAAPLGFSAF QGGLWPPVPVSQLIKLVQR" gene 1423553..1425006 /gene="ydiU" /locus_tag="STM1345" /db_xref="GeneID:1252863" regulatory 1423553..1423558 /regulatory_class="ribosome_binding_site" /gene="ydiU" /locus_tag="STM1345" /note="putative RBS for ydiU; RegulonDB:STMS1H001591" CDS 1423564..1425006 /gene="ydiU" /locus_tag="STM1345" /note="similar to E. coli orf, hypothetical protein (AAC74776.1); Blastp hit to AAC74776.1 (478 aa), 82% identity in aa 1 - 478" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460311.1" /db_xref="GI:16764696" /db_xref="GeneID:1252863" /translation="MTLSFTARWRDELPATYTALLPTPLKNARLIWYNDELAQQLAIP ASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGS TLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDTPVQ RETQETGAMLMRLAQSHMRFGHFEHFYYRREPEKVQQLADFAIRHYWPQWQDVPEKYA LWFEEVAARTGRLIAEWQTVGFAHGVMNTDNMSILGLTIDYGPFGFLDDYDPGFIGNH SDHQGRYRFDNQPSVALWNLQRLAQTLTPFIEIDALNRALDRYQDALLTHYGQRMRQK LGFFTEQKDDNVLLNELFSLMAREGSDYTRTFRMLSHTEQQSASSPLRDTFIDRAAFD AWFDRYRARLRTEAVDDALRQQQMQRVNPAIVLRNWLAQRAIDAAEQGDMAELHRLHE VLRQPFTDRDDDYARRPPEWGKRLEVSCSS" gene complement(1425041..1425232) /gene="ydiE" /locus_tag="STM1346" /db_xref="GeneID:1252864" CDS complement(1425041..1425232) /gene="ydiE" /locus_tag="STM1346" /note="similar to E. coli orf, hypothetical protein (AAC74775.1); Blastp hit to AAC74775.1 (63 aa), 60% identity in aa 1 - 63" /codon_start=1 /transl_table=11 /product="hemin uptake protein hemP" /protein_id="NP_460312.1" /db_xref="GI:16764697" /db_xref="GeneID:1252864" /translation="MSRMDNTELPHPKEIDNETLLPAAERRVNSQALLGPDGKVIIDH NGQEYLLRKTQAGKLLLTK" gene complement(1425389..1426471) /gene="aroH" /locus_tag="STM1347" /db_xref="GeneID:1252865" CDS complement(1425389..1426435) /gene="aroH" /locus_tag="STM1347" /EC_number="2.5.1.54" /note="tryptophan repressible; similar to E. coli 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, tryptophan repressible) (AAC74774.1); Blastp hit to AAC74774.1 (348 aa), 90% identity in aa 1 - 348" /codon_start=1 /transl_table=11 /product="3-deoxy-7-phosphoheptulonate synthase" /protein_id="NP_460313.1" /db_xref="GI:16764698" /db_xref="GeneID:1252865" /translation="MNRTDELRTARIDSLVTPTELAQRYPVSSSVASHVTDSRRRIEK ILNGEDPRLLVVIGPCSIHDLNAAMEYATQLQAQRQKHQARLEIVMRTYFEKPRTVVG WKGLISDPDLNGSYRVNYGLELARRLLLQVNELGVPTATEFLDMVTGQFIADLISWGA IGARTTESQIHREMASALSCPVGFKNGTDGNTRIAVDAIRASRASHMFLSPDKDGQMT IYQTSGNPYGHIIMRGGKKPNYHAEDIAAACDTLHEFDLPEHLVVDFSHGNCQKQHRR QLEVCDDICQQIRNGSTAIAGIMAESFLREGTQKIISGQPLIYGQSITDPCLNWEDTE VLLEKLAAAVDSRF" regulatory complement(1426447..1426455) /regulatory_class="minus_10_signal" /gene="aroH" /locus_tag="STM1347" /note="putative -10_signal for aroH; RegulonDB:STMLTH004485" regulatory complement(1426463..1426471) /regulatory_class="minus_35_signal" /gene="aroH" /locus_tag="STM1347" /note="putative -35_signal for aroH; RegulonDB:STMLTH004485" protein_bind complement(1426581..1426587) /note="putative binding site for TrpR, RegulonDB: STMS1H000376" /bound_moiety="TrpR" gene complement(1426591..1427437) /gene="ydiA" /locus_tag="STM1348" /db_xref="GeneID:1252866" CDS complement(1426591..1427424) /gene="ydiA" /locus_tag="STM1348" /note="similar to E. coli orf, hypothetical protein (AAC74773.1); Blastp hit to AAC74773.1 (277 aa), 97% identity in aa 1 - 277" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate synthase regulatory protein" /protein_id="NP_460314.1" /db_xref="GI:16764699" /db_xref="GeneID:1252866" /translation="MDNVVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVE NESRARAVKDQIDAIYQQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQ EMKLDPTPIAHRTHGLNPGNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSR CGKTPTSLYLAMQFGIRAANYPFIADDMDNLTLPTSLKPLQHKLFGLTIDPERLAAIR EERRENSRYASLRQCRMEVAEVEALYRKNQIPCLNSTNYSVEEIATKILDIMGLNRRM Y" regulatory complement(1427432..1427437) /regulatory_class="ribosome_binding_site" /gene="ydiA" /locus_tag="STM1348" /note="putative RBS for ydiA; RegulonDB:STMS1H001592" gene 1427610..1430139 /gene="pps" /locus_tag="STM1349" /db_xref="GeneID:1252867" regulatory 1427610..1427618 /regulatory_class="minus_35_signal" /gene="pps" /locus_tag="STM1349" /note="putative -35_signal for pps; RegulonDB:STMLTH004486" regulatory 1427636..1427644 /regulatory_class="minus_10_signal" /gene="pps" /locus_tag="STM1349" /note="putative -10_signal for pps; RegulonDB:STMLTH004486" regulatory 1427749..1427754 /regulatory_class="ribosome_binding_site" /gene="pps" /locus_tag="STM1349" /note="putative RBS for pps; RegulonDB:STMS1H001593" CDS 1427761..1430139 /gene="pps" /locus_tag="STM1349" /EC_number="2.7.9.2" /note="similar to E. coli phosphoenolpyruvate synthase (AAC74772.1); Blastp hit to AAC74772.1 (792 aa), 96% identity in aa 1 - 792" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate synthase" /protein_id="NP_460315.1" /db_xref="GI:16764700" /db_xref="GeneID:1252867" /translation="MSNNGSSPLVLWYNQLGMNDVDRVGGKNASLGEMITNLSGMGVS VPNGFATTADAFNQFLDQSGVNQRIYELLDKTDIDDVSQLAKAGAQIRQWIIDTPFQP ELENAIRDAYAQLSSDDENASFAVRSSATAEDMPDASFAGQQETFLNVQGFDAVLVAV KHVFASLFNDRAISYRVHQGYDHRGVALSAGVQRMVRSDLASSGVMFSIDTESGFDQV VFITSAWGLGEMVVQGAVNPDEFYVHKPTLAAGRPAIVRRTMGSKKIRMVYAATQEHG KQVKIEDVPQEQRDIFSLTNEEVQELAKQAVQIEQHYGRPMDIEWAKDGHTGKLFIVQ ARPETVRSRGQVMERYTLHAQGKIIAEGRAIGHRIGAGTVKVIHDIGEMNRIEPGDVL VTDMTDPDWEPIMKKAAAIVTNRGGRTCHAAIIARELGIPAVVGCGDATERMKDGEKV TVSCAEGDTGYVYADMLDFSVKSSSVDTMPELPLKVMMNVGNPDRAFDFACLPNEGVG LARLEFIINRMIGVHPRALLEFDDQDAALQNDIREMMKGFDSPREFYVGRLTEGIATL GAAFYPKRVIVRLSDFKSNEYANLVGGERYEPHEENPMLGFRGAGRYVAESFRDCFAL ECEAVKRVRNDMGLTNVEIMIPFVRTVDQAKAVIEELARQGLKRGENGLKIIMMCEIP SNALLAEQFLEYFDGFSIGSNDMTQLALGLDRDSGVVSELFDERNDAVKALLSMAIRA AKKQGKYVGICGQGPSDHEDFAAWLMEEGIDSLSLNPDTVVQTWLSLAELKK" gene complement(1430181..1431833) /gene="ydiD" /locus_tag="STM1350" /db_xref="GeneID:1252868" CDS complement(1430181..1431821) /gene="ydiD" /locus_tag="STM1350" /note="similar to E. coli putative ligase/synthetase (AAC74771.1); Blastp hit to AAC74771.1 (566 aa), 82% identity in aa 19 - 560" /codon_start=1 /transl_table=11 /product="cyclohexanecarboxylate-CoA ligase" /protein_id="NP_460316.1" /db_xref="GI:16764701" /db_xref="GeneID:1252868" /translation="MSVTLTFDAARRKTYRESGYWGDASLGDYWRQTARAVPDKIAVV DNHGASWTYAALDYAASRLANWLLSQGIQPGDRVAFQLPGWCEFTLIYLACLKTGAVS VPLLPAWREAELVWVLNKCQAKIFFAPTVFKQNRPVDLILPLQNQLRHLTHIVGVDKL APATTALALSQIIDRSEPLQSDINIHGDELAAVLFTSGTEGMPKGVMLTHNNILASER AYCARLNLTWQDVFLMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPEACLTLLAQQ RCTCMSGATPFIYDLLCAIEQQPADLSSLRFFLCGGTTIPKKVARDCQQRGIKLLSIY GSTESSPHSMVNLGDSTSRMMNTDGYAATGVEIKIVDEDRNTLPAGHEGEEASRGPNV FMGYLDEPELTARALDNEGWYYSGDLCRMDEDGYIKITGRKKDIIIRGGENISSREVE DILLQHPRIHDACVVAMPDERLGERSCAYVVLKPPHLSLTLEEVIAFFSRKRVAKYKY PERIVIVEKLPRTASGKVQKFLLRQDIIERLRQEHTAV" regulatory complement(1431828..1431833) /regulatory_class="ribosome_binding_site" /gene="ydiD" /locus_tag="STM1350" /note="putative RBS for ydiD; RegulonDB:STMS1H001594" gene complement(1431911..1432220) /gene="ydiT" /locus_tag="STM1351" /db_xref="GeneID:1252869" CDS complement(1431911..1432204) /gene="ydiT" /locus_tag="STM1351" /note="similar to E. coli orf, hypothetical protein (AAC74770.1); Blastp hit to AAC74770.1 (97 aa), 80% identity in aa 1 - 97" /codon_start=1 /transl_table=11 /product="ferredoxin family protein" /protein_id="NP_460317.1" /db_xref="GI:16764702" /db_xref="GeneID:1252869" /translation="MSSDNKVNVDVKLGVNKFYVDEGHPHIILRSSPDMQEFNKLIKA CPAGLYKLDDAGNIHFDSAGCLECGTCRVLCGNTLLEKWEYPAGTFGVEFRYG" gene complement(1432201..1433501) /gene="ydiS" /locus_tag="STM1352" /db_xref="GeneID:1252870" CDS complement(1432201..1433487) /gene="ydiS" /locus_tag="STM1352" /EC_number="1.5.5.-" /note="similar to E. coli flavoprotein; probably electron transport (AAC74769.1); Blastp hit to AAC74769.1 (429 aa), 80% identity in aa 1 - 429" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_460318.1" /db_xref="GI:16764703" /db_xref="GeneID:1252870" /translation="MSDDKFDAIVVGAGVAGTVAAYVMAKAGLDVLVIERGNSAGSKN MTGGRLYAHSIESIMPGFATSAPIERVVTREKISFLTEESAVTLDFHRAPPTPPLTSY TVLRNKLDPWLMAQAEQAGAQFIPGVRVDALVREGNRVTGVQAGDDILDANIVILADG VNSMLGRSLDMVPVSSAHHYAVGVKELIGLSPALIEERFNLASHEGAAWLFAGAPSNG LMGGGFLYTNRDSVSLGLVCGLGDIAHATKSVPQMLEDFKQHPAIRPLIQGGTLLEYS AHMVPEGGIAMMPELANDGVMIVGDAAGLCLNLGYTVRGMDLAIASAQAAAQTAIDAK ARQDFSAASLAGYKRALEKNGVLRDMRHFRKLPGLMENPRLFTEYPRMAANIVGDLFT VDGGPVPPLRKTILSHAKKIGLVNLLKDGIKGATAL" regulatory complement(1432215..1432220) /regulatory_class="ribosome_binding_site" /gene="ydiT" /locus_tag="STM1351" /note="putative RBS for ydiT; RegulonDB:STMS1H001595" regulatory complement(1433496..1433501) /regulatory_class="ribosome_binding_site" /gene="ydiS" /locus_tag="STM1352" /note="putative RBS for ydiS; RegulonDB:STMS1H001596" gene complement(1433544..1434495) /gene="ydiR" /locus_tag="STM1353" /db_xref="GeneID:1252871" CDS complement(1433544..1434479) /gene="ydiR" /locus_tag="STM1353" /note="similar to E. coli putative flavoprotein (AAC74768.1); Blastp hit to AAC74768.1 (312 aa), 72% identity in aa 1 - 312" /codon_start=1 /transl_table=11 /product="electron transfer flavoprotein subunit alpha" /protein_id="NP_460319.1" /db_xref="GI:16764704" /db_xref="GeneID:1252871" /translation="MNHLANVWVFSDNVERYAELMTGARQWGEKVYAIVQGNTDIDYV KALGADEIVILESHTDLQRVENYAETLASLLGDQNGLLLMAATKRCKALGARLSIQLD AVMVNDATSIDLLDGTLHAEHRMYGGLAFGKEKLNSPQAIITLAPGVLEPAAPLPGHT CPQTTLAYIAPRHEVLCQQRRAKSLSSVDLSKAKRVIGVGRGLAAQSDLDMVHKLATV LGAEVGCSRPIAEGENWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKIIV AINKDKNAPIFNYADYGLVGDIYKVVPALIDQLSR" regulatory complement(1434490..1434495) /regulatory_class="ribosome_binding_site" /gene="ydiR" /locus_tag="STM1353" /note="putative RBS for ydiR; RegulonDB:STMS1H001597" gene complement(1434501..1435276) /gene="ydiQ" /locus_tag="STM1354" /db_xref="GeneID:1252872" CDS complement(1434501..1435265) /gene="ydiQ" /locus_tag="STM1354" /note="similar to E. coli putative transport protein (AAC74767.1); Blastp hit to AAC74767.1 (254 aa), 79% identity in aa 1 - 254" /codon_start=1 /transl_table=11 /product="putative electron transfer flavoprotein" /protein_id="NP_460320.1" /db_xref="GI:16764705" /db_xref="GeneID:1252872" /translation="MKIITCFKLVPEEQDITVTPEHSLNFDRAEAKISQFDLNAIEAA AQLAGGGDEIAALTVGGSLLQNSKVRKDVLSRGPDALFMVQDAQMEHALPKETALALA SAAEKIGFDLLLFGEGSGDIYAQQVGLLTGELLKLPVINAVSHIQRDGDKIIVERTLE EDVEIIELTLPAVLCVTSDINVPRIPSMKAILGAGKKAVTSWLASDIHWTPTTPMAEL VAISVPPQTERKHIILDNDSPEAITALADHLKKSLN" regulatory complement(1435271..1435276) /regulatory_class="ribosome_binding_site" /gene="ydiQ" /locus_tag="STM1354" /note="putative RBS for ydiQ; RegulonDB:STMS1H001598" gene 1435719..1436618 /gene="ydiP" /locus_tag="STM1355" /db_xref="GeneID:1252873" regulatory 1435719..1435724 /regulatory_class="ribosome_binding_site" /gene="ydiP" /locus_tag="STM1355" /note="putative RBS for ydiP; RegulonDB:STMS1H001599" CDS 1435728..1436618 /gene="ydiP" /locus_tag="STM1355" /note="similar to E. coli putative ARAC-type regulatory protein (AAC74766.1); Blastp hit to AAC74766.1 (303 aa), 80% identity in aa 1 - 292" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="NP_460321.1" /db_xref="GI:16764706" /db_xref="GeneID:1252873" /translation="MYQRCFDSAAETIFEQDKTPRFSRFVISDDPNWESGHHMHDNET ELIYVKKGIARLIIDSSLYVAHADDIVVVERGRLHAVASDSNSPATTYTCALYGFCFP GWEENQLLQSHSCPVVSVVQGKGVIKSIFNELSVLLPQGKNVLASSVYDAFAYTLTAL YYENFKNAYRSEQGYIKKDVLIKDVLVYLNNNYREKITLDQLSKKFRASVSYICHEFA KEYHISPINYVIQRRMTEAKFALTNTESPLAEISWRVGYENVDHFAKLFMRHVGCSPN DYRKQFKNSLVEQAYLLPNT" gene complement(1436694..1437858) /gene="ydiO" /locus_tag="STM1356" /db_xref="GeneID:1252874" CDS complement(1436694..1437845) /gene="ydiO" /locus_tag="STM1356" /note="similar to E. coli putative oxidoreductase (AAC74765.1); Blastp hit to AAC74765.1 (401 aa), 95% identity in aa 19 - 401" /codon_start=1 /transl_table=11 /product="putative acyl-CoA dehydrogenase" /protein_id="NP_460322.1" /db_xref="GI:16764707" /db_xref="GeneID:1252874" /translation="MDFSLTEEQELLLASIRELITSNFPEEYFRTCDQTGTYPKEFMQ ALAENGISMLGVPEEFGGIPADYVTQMLALMEISKCGAPAFLITNGQCIHSMRRFGSA EQLRKTAESTLATGDPAYALALTEPGAGSDNNSATTTWTRKNGKVYLNGQKTFITGAK EYPYMLVLARDTEPKDPKKAFTLWWVDSNKPGIKINPLHKIGWHMLSTCEVYLDNVEV DESDRVGEEGMGFLNVMYNFEMERLINAARSTGFAECAFEDAARYANQRIAFGKPIGH NQMIQEKLALMAIKIENMRNMVLKVAWQADREESLRTSAALAKLYCARTAMEVIDDAI QIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILKDYQNK" regulatory complement(1437853..1437858) /regulatory_class="ribosome_binding_site" /gene="ydiO" /locus_tag="STM1356" /note="putative RBS for ydiO; RegulonDB:STMS1H001600" gene complement(1437859..1439412) /gene="ydiF" /locus_tag="STM1357" /db_xref="GeneID:1252875" CDS complement(1437859..1439412) /gene="ydiF" /locus_tag="STM1357" /note="similar to E. coli putative enzyme (AAC74764.1); Blastp hit to AAC74764.1 (531 aa), 93% identity in aa 15 - 531" /codon_start=1 /transl_table=11 /product="putative acetyl-CoA:acetoacetyl-CoA transferase beta subunit" /protein_id="NP_460323.3" /db_xref="GI:1109557621" /db_xref="GeneID:1252875" /translation="MLSAQEAVNYIPDEATLCILGAGGGILEATTLITALADKYQTTQ SPRDLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISELAEQNKIAAYNY PQGVLTQTLRASAAHQPGILSDIGIGTFVDPRQQGGKLNDVTKEDLIKLVEIDNKEYL YYKAIAPNVAFIRATTCDSEGYASFEDEVMYLDALVIAQAVHNNGGIVMMQVQKMVKK ATLHPKSVRIPGYLVDIVVVDADQTQLYGGAPVNRFISGDFTLDDSTQLTLPLNQRKL VARRALFEMRKGAVGNVGVGIADGIGLVAREEGCADDFVLTVETGPVGGITSQGVAFG ANVNTRAILDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDIS ATSQKIIFCGTLTAGSLKTEITDGKLNILQEGRVKKFVSELPEITFSGKIALERGLDV RYITERAVFTLKQDGLHLIEIAPGVDLQRDILDKMDFSPVISPDLKLMDTRLFTDSTM GFTLPDATH" gene complement(1439608..1440377) /gene="aroD" /locus_tag="STM1358" /db_xref="GeneID:1252876" CDS complement(1439608..1440366) /gene="aroD" /locus_tag="STM1358" /EC_number="4.2.1.10" /note="similar to E. coli 3-dehydroquinate dehydratase (AAC74763.1); Blastp hit to AAC74763.1 (252 aa), 80% identity in aa 1 - 252" /codon_start=1 /transl_table=11 /product="3-dehydroquinate dehydratase" /protein_id="NP_460324.1" /db_xref="GI:16764709" /db_xref="GeneID:1252876" /translation="MKTVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDI LEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNR AAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRK MQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEV FGSAATFGAVKKASAPGQISVADLRTVLTILHQA" regulatory complement(1440372..1440377) /regulatory_class="ribosome_binding_site" /gene="aroD" /locus_tag="STM1358" /note="putative RBS for aroD; RegulonDB:STMS1H001601" gene complement(1440411..1441289) /gene="ydiB" /locus_tag="STM1359" /db_xref="GeneID:1252877" CDS complement(1440411..1441277) /gene="ydiB" /locus_tag="STM1359" /note="similar to E. coli putative oxidoreductase (AAC74762.1); Blastp hit to AAC74762.1 (288 aa), 90% identity in aa 1 - 288" /codon_start=1 /transl_table=11 /product="quinate/shikimate dehydrogenase" /protein_id="NP_460325.1" /db_xref="GI:16764710" /db_xref="GeneID:1252877" /translation="MDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEV DNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVNDDGYLR GYNTDGTGHIRAIKESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDF FEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIG DVSLLRPELLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFELWTGKAFP LDYVKQVMGFTA" regulatory complement(1441284..1441289) /regulatory_class="ribosome_binding_site" /gene="ydiB" /locus_tag="STM1359" /note="putative RBS for ydiB; RegulonDB:STMS1H001602" gene complement(1441344..1442595) /gene="ydiN" /locus_tag="STM1360" /db_xref="GeneID:1252878" CDS complement(1441344..1442579) /gene="ydiN" /locus_tag="STM1360" /note="similar to E. coli putative amino acid/amine transport protein (AAC74761.1); Blastp hit to AAC74761.1 (423 aa), 85% identity in aa 3 - 412" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_460326.1" /db_xref="GI:16764711" /db_xref="GeneID:1252878" /translation="MSQNKARNMPYLLAVICIYFSYFLHGMSVITLAQNMTSLAQKFS TDSAGIAYLISGIGLGRLVSILFFGVLSDKFGRRAIILLGAVLYMLFFFGIPASPNLM IAFILAVCVGVANSALDTGGYPALMECFPKASGSAVILVKAMVSFGQMIYPLIVSALL VNHIWYGYAVVIPGILFVLITLMLLKSRFPSQLVDASIAKELPQMNSTPLVWLEGVAS VLFGVAAFSTFYVIVVWMPKYAMAFAGMAESDALKTISYYSMGSLVCVFIFAALLKKM VRPIWANVFNAGLATITAAAIYLYPSPLICNAGAFVIGFSAAGGILQLGVSVMSEFFP KSKAKVTSIYMMMGGVANFLIPLITGYLSTIGLQYIILLDFAFALLTFITAIIVFIRY YRVFKIPQNDVRFGEHYFQ" regulatory complement(1442590..1442595) /regulatory_class="ribosome_binding_site" /gene="ydiN" /locus_tag="STM1360" /note="putative RBS for ydiN; RegulonDB:STMS1H001603" gene complement(1442943..1444162) /gene="ydiM" /locus_tag="STM1361" /db_xref="GeneID:1252879" CDS complement(1442943..1444154) /gene="ydiM" /locus_tag="STM1361" /note="similar to E. coli putative transport system permease protein (AAC74760.1); Blastp hit to AAC74760.1 (404 aa), 79% identity in aa 1 - 395" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_460327.1" /db_xref="GI:16764712" /db_xref="GeneID:1252879" /translation="MKNRYFPTAVGLYFNYFVHGMGVILMSLNMSSLEQQWHTSAAGV SIVISSLGIGRLSVLLIAGMLSDRFGRRPFIILGTTCYLIFFIGILYAQTIFVAYACG FLAGMANSFLDAGTYPSLMEAFPRSPSTANILIKAFVSGGQFLLPIIISLLVWANMWF GWSFLLAGAIMLINALFLLRCPFPPYPGRILKPKISQAPVTGVHHCSLIDLISYTLYG YISMATFYLISQWLAQYGQFVAGMSYTQSIKLLSIYTCGSLLCVFITAPLVRKTIRST TLLMFYTFISFIALLTVCLHPQTYIVMIFAFVIGFSSAGGVVQIGLTLMASRFPQEKG KATGIYYSAGSIATFTIPLITARISEMSIAHIMWFDTGIAAVGFLLALFIGYRSRAES QHHAEAASTAQ" regulatory complement(1444157..1444162) /regulatory_class="ribosome_binding_site" /gene="ydiM" /locus_tag="STM1361" /note="putative RBS for ydiM; RegulonDB:STMS1H001604" gene complement(1444295..1444654) /gene="ydiL" /locus_tag="STM1362" /db_xref="GeneID:1252880" CDS complement(1444295..1444654) /gene="ydiL" /locus_tag="STM1362" /note="similar to E. coli orf, hypothetical protein (AAC74759.1); Blastp hit to AAC74759.1 (127 aa), 59% identity in aa 10 - 127" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460328.1" /db_xref="GI:16764713" /db_xref="GeneID:1252880" /translation="MMNALELQALRRIFDMTIEECTIYITQDNNSATWQRWEAGDIPI SPEIIARLKEMKARRQRRINAIVDKINNRIGNNTMRYFPDLSSFQSIYTEGDFIEWKI YQSVAAELFAHDLERLC" gene complement(1444822..1444928) /gene="rprA" /locus_tag="STM1363" /db_xref="GeneID:1252881" ncRNA complement(1444822..1444928) /ncRNA_class="other" /gene="rprA" /locus_tag="STM1363" /product="regulatory RNA" /db_xref="GeneID:1252881" gene complement(1445112..1446246) /gene="ydiK" /locus_tag="STM1364" /db_xref="GeneID:1252882" CDS complement(1445112..1446230) /gene="ydiK" /locus_tag="STM1364" /note="similar to E. coli orf, hypothetical protein (AAC74758.1); Blastp hit to AAC74758.1 (370 aa), 89% identity in aa 1 - 370" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460329.1" /db_xref="GI:16764714" /db_xref="GeneID:1252882" /translation="MVNVRQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTI VIATWPVLLKLQKILWGRRSLAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTG GDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGSAIMAKVRPYIGTTTTWFVGQAAHI GRFMMHCALMLLFSALLYWRGEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGV VVTALVQAVLGGVGLAISGVPYATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTT WGTVLLVWSAVVGTLDNVIRPVLIRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLL AVTWRLFSAWVHEVPAPTNEPEEILEELDDIEEANKQS" regulatory complement(1446241..1446246) /regulatory_class="ribosome_binding_site" /gene="ydiK" /locus_tag="STM1364" /note="putative RBS for ydiK; RegulonDB:STMS1H001605" gene 1446477..1449551 /gene="ydiJ" /locus_tag="STM1365" /db_xref="GeneID:1252883" regulatory 1446477..1446482 /regulatory_class="ribosome_binding_site" /gene="ydiJ" /locus_tag="STM1365" /note="putative RBS for ydiJ; RegulonDB:STMS1H001606" CDS 1446495..1449551 /gene="ydiJ" /locus_tag="STM1365" /note="similar to E. coli putative oxidase (AAC74757.1); Blastp hit to AAC74757.1 (1018 aa), 88% identity in aa 1 - 1017" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460330.1" /db_xref="GI:16764715" /db_xref="GeneID:1252883" /translation="MIPQISQAPGVVQLVLNFLQALEQQGFTGDTATSYADRLTMSTD NSIYQLLPDAVVFPRSTADVALLARLAAEPRFTSLIFTPRGGGTGTNGQALNQGIIVD MSRYMNRIIEINPEEGWVRVEAGVIKDQLNQALKPYGYFFAPELSTSNRATLGGMINT DASGQGSLVYGKTSDHVLGIRAVLLGGDILDTQSMPVELARTLGENTTTPGRIYQTVY QSCLENRQLILDSFPKLNRFLTGYDLRHVFNDDMTRFDLTRILTGSEGTLAFITEARL DITPIPKVRRLVNVKYDSFDSALRNAPFMVDARALSVETVDSKVLNLAREDIVWHSVS ELITDVPDKEMLGLNIVEFAGDDEALIDGQVEALCHRLDGLMARAEAGVIGWQLCTDL TGIERIYAMRKKAVGLLGNAKGAAKPIPFAEDTCVPPEHLADYIAEFRALLDGHGLSY GMFGHVDAGVLHVRPALDMCDPQQELLMKQISDEVVALTARYGGLLWGEHGKGFRAEY SPAFFGEVLYGELRKIKAAFDPHNRLNPGKICPPQGIEAPMMKVDAVKRGTWDRQIPL AVRQTWRGAMECNGNGLCFNFDAKSPMCPSMKISLNRIHSPKGRATLVREWLRLLADR GVDPLKLEKELPEKRASLRTLIARTRNSWHKRKGEYDFSHEVKEAMSGCLACKACTTQ CPIKIDVPEFRSRFLQLYHTRYLRPVRDHLVATVETYAPLMARAPKTFNFFINQPVVR NLAKKHIGMVDLPLLSAPSLQQQLVGHPSANMTLEQLERMSAEQKAKTVLVVQDPFTS YYDARVVADFIRLAEKLGRRPVLLPFSPNGKAQHIKGFLNRFAKTAKKTSEFLNRIAA LGMPMVGVDPALVLCYRDEYKLALGEQRGDFHVLLVHEWLAQEINARLSVEVSGEPWY FFGHCTEVTALPGAPAQWAAIFAHFGAKLENVSVGCCGMAGTYGHELTNHKNSLGIYE LSWHQAMQRLPRNRCLATGYSCRSQVKRIEGTGVRHPLQALLEIIG" gene 1449534..1449958 /locus_tag="STM1366" /db_xref="GeneID:1252884" regulatory 1449534..1449539 /regulatory_class="ribosome_binding_site" /locus_tag="STM1366" /note="putative RBS for STM1366; RegulonDB:STMS1H001607" CDS 1449548..1449958 /locus_tag="STM1366" /note="possibly involved in aromatic compounds catabolism; similar to E. coli orf, hypothetical protein (AAC74756.1); Blastp hit to AAC74756.1 (136 aa), 88% identity in aa 1 - 136" /codon_start=1 /transl_table=11 /product="thioesterase" /protein_id="NP_460331.1" /db_xref="GI:16764716" /db_xref="GeneID:1252884" /translation="MIWKREVTLDALNAMGEGNMVGLLDIRFERIGDDTLEATMPVDH RTKQPFGLLHGGASVVLAESIGSVAGYLCTQGEQKVVGLEVNANHVRSARQGRVRGVC KALHTGARHQVWQIEIFDEQGRLCCSSRLTTAIV" gene 1450009..1450245 /gene="ydiH" /locus_tag="STM1367" /db_xref="GeneID:1252885" regulatory 1450009..1450014 /regulatory_class="ribosome_binding_site" /gene="ydiH" /locus_tag="STM1367" /note="putative RBS for ydiH; RegulonDB:STMS1H001608" CDS 1450018..1450245 /gene="ydiH" /locus_tag="STM1367" /note="similar to E. coli orf, hypothetical protein (AAC74755.1); Blastp hit to AAC74755.1 (89 aa), 89% identity in aa 24 - 89" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460332.1" /db_xref="GI:16764717" /db_xref="GeneID:1252885" /translation="MIYCARLHISEDDMSTDLDPTQLAIEFLRRDKTELSPAQYLKRL KQLELEFADLLTLSATELKEEIYFAWRLGVH" gene complement(1450533..1451885) /locus_tag="STM1368" /db_xref="GeneID:1252886" CDS complement(1450533..1451879) /locus_tag="STM1368" /note="similar to E. coli part of a kinase (AAC74799.1); Blastp hit to AAC74799.1 (463 aa), 46% identity in aa 6 - 444" /codon_start=1 /transl_table=11 /product="L-cystine transporter" /protein_id="NP_460333.1" /db_xref="GI:16764718" /db_xref="GeneID:1252886" /translation="MVVTLAYIALFLVFSWVILRINQKSDSLSKSVFIAIFLGAVIGL SLHFISANHTKTIIEWYSIVGNGYVHLLKLVAIPLIFISILSAINKLENSAGIGKMSL TIVGCMLCLVMVAGFIGLLTAHVLGLDASAFVHMPSMLTTEEVNKTAAVSIPQLVTSL IPTNIFLDLTGARSVSVIGIVIFTLIAGIALLKVKKEAPEEGQKLSAGINAIQIWVMK MVRIVIALTPYGVMALMTTVFSSYRLEQFASLLGFIGACYIAIFMMFIVHAILLILSG NNPARYFRMVWPVLTFAFVSRSSAASIPLAISAQEKFGVQSTIANISASFGSSMGQNG CAGIYPAIMVAMIAPTIGIDPLSLHFLAAMLPAIALGSIGVAGVGGGGTFAALIVLST LNFPVALVGIFIAIEPIVDMARTALNVNGSMMSGVLANRILNNHTADDMPAVIDRP" regulatory complement(1451880..1451885) /regulatory_class="ribosome_binding_site" /locus_tag="STM1368" /note="putative RBS for STM1368; RegulonDB:STMS1H001609" gene 1452295..1452674 /gene="sufA" /locus_tag="STM1369" /db_xref="GeneID:1252887" regulatory 1452295..1452300 /regulatory_class="ribosome_binding_site" /gene="sufA" /locus_tag="STM1369" /note="putative RBS for sufA; RegulonDB:STMS1H001610" CDS 1452306..1452674 /gene="sufA" /locus_tag="STM1369" /note="similar to E. coli orf, hypothetical protein (AAC74754.1); Blastp hit to AAC74754.1 (122 aa), 84% identity in aa 1 - 122" /codon_start=1 /transl_table=11 /product="Fe-S cluster assembly scaffold SufA" /protein_id="NP_460334.1" /db_xref="GI:16764719" /db_xref="GeneID:1252887" /translation="MELHSDTFNPEDFPWQGLTLTPAAAAHIRELAEKQPGMLGVRLS VKQTGCAGFGYVLDTVREPDKDDLVFEAEGAKLFAPLQAMPFIDGTEVDYVQEGLNQL FKFHNPKAQNECGCGESFGV" gene 1452672..1454170 /gene="sufB" /locus_tag="STM1370" /db_xref="GeneID:1252888" regulatory 1452672..1452677 /regulatory_class="ribosome_binding_site" /gene="sufB" /locus_tag="STM1370" /note="putative RBS for sufB; RegulonDB:STMS1H001611" CDS 1452683..1454170 /gene="sufB" /locus_tag="STM1370" /note="similar to E. coli orf, hypothetical protein (AAC74753.1); Blastp hit to AAC74753.1 (508 aa), 96% identity in aa 14 - 508" /codon_start=1 /transl_table=11 /product="Fe-S cluster assembly protein SufB" /protein_id="NP_460335.1" /db_xref="GI:16764720" /db_xref="GeneID:1252888" /translation="MSRNTEATEEVGIWTGGRLNYKEGFFTQLPTDELAKGISEEVVR AISAKRNEPEWMLEFRLNAYRAWLDMDEPHWLKAHYDKLNYQDYSYYSAPSCGNCDDS CVSQPGAVQQTGANTFLSKEVEDAFEQLGVPVREGKEVAVDAIFDSVSVATTYREKLA EQGIIFCSFGEAIHDHPDLVRKYLGTVVPGNDNFFAALNAAVASDGTFIYVPKGVRCP MELSTYFRINAEKTGQFERTILVADEGSYVSYIEGCSAPVRDSYQLHAAVVEVIIHKD AEVKYSTVQNWFPGDNNTGGILNFVTKRALCEGENSKMSWTQSETGSAITWKYPSCIL RGDNSIGEFYSVALTSGHQQADTGTKMIHIGKNTRSTIISKGISAGHSQNSYRGLVKI MPTATNARNFTQCDSMLIGADCGAHTFPYVECRNNSAQLEHEATTSRIGEDQLFYCLQ RGISEEDAISMIVNGFCKDVFSELPLEFAVEAQKLLAISLEHSVG" gene 1454176..1454933 /gene="sufC" /locus_tag="STM1371" /db_xref="GeneID:1252889" regulatory 1454176..1454181 /regulatory_class="ribosome_binding_site" /gene="sufC" /locus_tag="STM1371" /note="putative RBS for sufC; RegulonDB:STMS1H001612" CDS 1454187..1454933 /gene="sufC" /locus_tag="STM1371" /note="ABC superfamily (atp_bind); similar to E. coli putative ATP-binding component of a transport system (AAC74752.1); Blastp hit to AAC74752.1 (248 aa), 92% identity in aa 1 - 248" /codon_start=1 /transl_table=11 /product="Fe-S cluster assembly ATPase SufC" /protein_id="NP_460336.1" /db_xref="GI:16764721" /db_xref="GeneID:1252889" /translation="MLSIKDLQVSVEEKAILRGLNLEIRPGEVHAIMGPNGSGKSTLS ATLAGREDYEVTGGSVTFKGKDLLELSPEERAGEGIFMAFQYPVEIPGVSNQFFLQTA LNAVRAYRGQASLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA VLEPELCILDESDSGLDIDALKIVAEGVNALRDDKRAFIIVTHYQRILDYIKPDYVHV LYQGRIVRSGDFTLVKQLEEQGYGWLTEQQ" gene 1454895..1456179 /gene="sufD" /locus_tag="STM1372" /db_xref="GeneID:1252890" regulatory 1454895..1454900 /regulatory_class="ribosome_binding_site" /gene="sufC" /locus_tag="STM1371" /note="putative RBS for sufD; RegulonDB:STMS1H001613" CDS 1454908..1456179 /gene="sufD" /locus_tag="STM1372" /note="similar to E. coli orf, hypothetical protein (AAC74751.1); Blastp hit to AAC74751.1 (423 aa), 79% identity in aa 1 - 421" /codon_start=1 /transl_table=11 /product="FeS cluster assembly protein SufD" /protein_id="NP_460337.1" /db_xref="GI:16764722" /db_xref="GeneID:1252890" /translation="MAGLPNSSKALQQWQHLFEEKGESRTEQARQHLQQMLRLGLPTR KHEDWKYTPLEGLTHSQFIQQCATISAAQRDALALQIDAVRLVFVDGRFMPELSDSTQ NSGFDVSVRDERQALAAPVQPEVFLHLTESLAQCVTYIQVRRNQRPTRPLLLMHITQG VDGDELNTAHYRHHLALAEGAEATVIEHYVSLTAAKHFTGARLTMNVADNAQLRHFKL AFENASSYHFAHNDLLLATDASAFSHSFLLGAAVLRHHSSSQLNGENATLRLNSLAMP VKNEVCDTRTWLEHNKGYCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNN LLLGKLAEVDTKPQLEIYADDVKCSHGATIGRIDDEQMFYLQSRGIRQQEARHMILYA FAAELTEAIHDSALKQQVLARIGQRLPGGLV" gene 1456163..1457396 /gene="sufS" /locus_tag="STM1373" /db_xref="GeneID:1252891" regulatory 1456163..1456168 /regulatory_class="ribosome_binding_site" /gene="sufS" /locus_tag="STM1373" /note="putative RBS for sufS; RegulonDB:STMS1H001614" CDS 1456176..1457396 /gene="sufS" /locus_tag="STM1373" /note="similar to E. coli orf, hypothetical protein (AAC74750.1); Blastp hit to AAC74750.1 (406 aa), 87% identity in aa 1 - 406" /codon_start=1 /transl_table=11 /product="bifunctional cysteine desulfurase/selenocysteine lyase" /protein_id="NP_460338.1" /db_xref="GI:16764723" /db_xref="GeneID:1252891" /translation="MTFPVEKVRADFPILQREVNGLPLAYLDSAASAQKPNQVIDAES AFYRHGYAAVHRGIHTLSAQATESMENVRKQASRFINARSAEELVFVRGTTEGINLVA NSWGTENIRAGDNIIISEMEHHANIVPWQMLCERKGAELRVIPLHPDGTLRLETLAAL FDDRTRLLAITHVSNVLGTENPLPDMIALARQHGAKVLVDGAQAVMHHAVDVQALDCD FYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMISTVSLTQGTTWAKAPWRFEA GTPNTGGIIGLGAAIDYVTSLGLDKIGDYEQMLMRYALEQLAQVPDITLYGPAQRLGV IAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAWYGVPAMCRASLAMYNTHEEVD RLVAGLTRIHRLLG" gene 1457401..1457825 /gene="ynhA" /locus_tag="STM1374" /db_xref="GeneID:1252892" regulatory 1457401..1457406 /regulatory_class="ribosome_binding_site" /gene="ynhA" /locus_tag="STM1374" /note="putative RBS for ynhA; RegulonDB:STMS1H001615" CDS 1457409..1457825 /gene="ynhA" /locus_tag="STM1374" /note="involved in Fe-S center assembly; similar to E. coli orf, hypothetical protein (AAC74749.1); Blastp hit to AAC74749.1 (138 aa), 87% identity in aa 1 - 138" /codon_start=1 /transl_table=11 /product="cysteine desufuration protein SufE" /protein_id="NP_460339.1" /db_xref="GI:16764724" /db_xref="GeneID:1252892" /translation="MAALPDKEKLLRNFTRCANWEEKYLYIIELGQRLAELNPQDRNP QNTIHGCQSQVWIVMRRNANGIIELQGDSDAAIVKGLMAVVFILYHQMTAQDIVHFDV RPWFEKMALAQHLTPSRSQGLEAMIRAIRAKAATLS" gene 1457967..1458981 /gene="ynhG" /locus_tag="STM1375" /db_xref="GeneID:1252893" regulatory 1457967..1457972 /regulatory_class="ribosome_binding_site" /gene="ynhG" /locus_tag="STM1375" /note="putative RBS for ynhG; RegulonDB:STMS1H001616" CDS 1457980..1458981 /gene="ynhG" /locus_tag="STM1375" /note="similar to E. coli orf, hypothetical protein (AAC74748.1); Blastp hit to AAC74748.1 (334 aa), 85% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="murein L,D-transpeptidase" /protein_id="NP_460340.1" /db_xref="GI:16764725" /db_xref="GeneID:1252893" /translation="MKRASFITLTIIGAYSALQAAWAVDYPLPPEGSRLIGQNQTYTV QEGDKNLQAIARRFDTAAMLILEANNTIAPVPKPGTLITIPSQMLLPDAPREGVIVNL AELRLYYYPPGENRVQVYPIGIGLQGLETPVMDTRIGQKIPNPTWTPTAGIRQRSLER GITLPPVIPAGPNNPLGRYALRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIK ALFAQVRTGTPVKVINQPVKFSVEPNGIRYVEVHRPLSPEEEQNVQTMPYVLPAEFTA FRNAQGVDSRLVDKALYRRAGYPVSVSAGQTPAVNTTAVESAQNGFVGEEGQTRATQ" gene complement(1459048..1459287) /gene="lppB" /locus_tag="STM1376" /db_xref="GeneID:1252894" CDS complement(1459048..1459287) /gene="lppB" /locus_tag="STM1376" /note="similar to E. coli murein lipoprotein (AAC74747.1); Blastp hit to AAC74747.1 (78 aa), 88% identity in aa 2 - 71" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460341.1" /db_xref="GI:16764726" /db_xref="GeneID:1252894" /translation="MNRTNQLILGAVVLGSTLLAGCSSNAKIDQLSSDVQTLSAKVEQ LSNDVNAMRSDVQAAKDDAARANQRLDNKVFRICK" gene complement(1459370..1459619) /gene="lpp" /locus_tag="STM1377" /db_xref="GeneID:1252895" CDS complement(1459370..1459606) /gene="lpp" /locus_tag="STM1377" /note="links outer and inner membranes; similar to E. coli murein lipoprotein (AAC74747.1); Blastp hit to AAC74747.1 (78 aa), 96% identity in aa 1 - 78" /codon_start=1 /transl_table=11 /product="murein lipoprotein" /protein_id="NP_460342.1" /db_xref="GI:16764727" /db_xref="GeneID:1252895" /translation="MNRTKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQL SNDVNAMRSDVQAAKDDAARANQRLDNQATKYRK" regulatory complement(1459614..1459619) /regulatory_class="ribosome_binding_site" /gene="lpp" /locus_tag="STM1377" /note="putative RBS for lpp; RegulonDB:STMS1H001617" gene complement(1459917..1461452) /gene="pykF" /locus_tag="STM1378" /db_xref="GeneID:1252896" CDS complement(1459917..1461329) /gene="pykF" /locus_tag="STM1378" /EC_number="2.7.1.40" /note="formerly F; fructose stimulated; pyruvate kinase I. (SW:KPY1_SALTY)" /codon_start=1 /transl_table=11 /product="pyruvate kinase" /protein_id="NP_460343.1" /db_xref="GI:16764728" /db_xref="GeneID:1252896" /translation="MKKTKIVCTIGPKTESEEMLSKMLDAGMNVMRLNFSHGDYAEHG QRIQNLRNVMSKTGKKAAILLDTKGPEIRTIKLEGGNDVSLKAGQTFTFTTDKSVVGN NEIVAVTYEGFTSDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNL PGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVVEIREHLKAHGGENIQII SKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVIT ATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICER TDRVMNSRLDYNNDSRKLRITEAVCRGAVETAEKLEAPLIVVATQGGKSARAVRKYFP DATILALTTNEVTARQLVLSKGVVSQLVKEINSTDDFYRLGKDVALQSGLAQKGDVVV MVSGALVPSGTTNTASVHVL" regulatory complement(1461425..1461433) /regulatory_class="minus_10_signal" /gene="pykF" /locus_tag="STM1378" /note="putative -10_signal for pykF; RegulonDB:STMLTH004487" regulatory complement(1461444..1461452) /regulatory_class="minus_35_signal" /gene="pykF" /locus_tag="STM1378" /note="putative -35_signal for pykF; RegulonDB:STMLTH004487" protein_bind complement(1461535..1461549) /note="putative binding site for FruR, RegulonDB: STMS1H000186" /bound_moiety="FruR" gene complement(1461731..1463080) /gene="orf48" /locus_tag="STM1379" /db_xref="GeneID:1252897" CDS complement(1461731..1463074) /gene="orf48" /locus_tag="STM1379" /note="amino acid permease YeeF like protein (gi|1526981)" /codon_start=1 /transl_table=11 /product="putative amino acid permease" /protein_id="NP_460344.1" /db_xref="GI:16764729" /db_xref="GeneID:1252897" /translation="MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVY IIGAIAMFFTAYSYSTLSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLV AVLGGVAVHAILPQIPVWVWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFV LLIVRLMLLDSSQITLSFRPFFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEG GGRAVSKATLLALVLATVLFIIVVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIW LKVAFSIIVAFVCAVGNIITAQTAVSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILF TGGVTLLLSYLFSGKIESISTLVNFGALFAFFVVNLCVFILFNFRMKAQRRIFAHVIS PIMGMIVIGYVCLNMNIHALILGISWAAIGIAILCYRKAHNQNIAIDLEGKKLLD" regulatory complement(1463075..1463080) /regulatory_class="ribosome_binding_site" /gene="orf48" /locus_tag="STM1379" /note="putative RBS for orf48; RegulonDB:STMS1H001618" gene complement(1463096..1463992) /gene="orf32" /locus_tag="STM1380" /db_xref="GeneID:1252898" CDS complement(1463096..1463989) /gene="orf32" /locus_tag="STM1380" /note="proline iminopeptidase like protein (gi|1526980)" /codon_start=1 /transl_table=11 /product="hydrolase" /protein_id="NP_460345.1" /db_xref="GI:16764730" /db_xref="GeneID:1252898" /translation="MNDTYLYGEMFSENILTSYRIYGDRKSLLTPLIILHGGPSGGFD YLLNYRRLADDGRMVIFYDQYGCGRSTHFPHADASFWTIARYLRQLTQLIHHLGIGHG YSILGHSWGGMLAAEHACLQPAGLRGTILASSPASIALWQQEAIRLFNALTPMSDDDI KNVIMPAVIYQNPPEQLVAYYARHVYTLAEEAVHVQRSNAQFAADPTVYHILWGTNEL AANGKLADWDITPHLCQIRCPVLVLRGENDQATERVVSPLLSHISDCRAVTIPGSSHN PHEENIAPCLAAVSAFLRDLA" regulatory complement(1463987..1463992) /regulatory_class="ribosome_binding_site" /gene="orf32" /locus_tag="STM1380" /note="putative RBS for orf32; RegulonDB:STMS1H001619" gene complement(1464048..1464792) /gene="orf245" /locus_tag="STM1381" /db_xref="GeneID:1252899" CDS complement(1464048..1464785) /gene="orf245" /locus_tag="STM1381" /note="ORF 245 (gi|4456875)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460346.1" /db_xref="GI:16764731" /db_xref="GeneID:1252899" /translation="MKILFIGESWHIHMIHSKGFDSFTSSKYEEGADYLLSCLRQGNI DVDYMPAHIVQTRFPQTAEALACYDAIVISDIGSNTFLLQNRTFYNMDIIPDALQLIA DYVAEGGGLLMIGGYLSFTGIEAKANYKNTVLAEVLPVDMLDVDDRVELPQGCKAVNT AVEHVITQPFSEWPPLLGYNKLIAKENSQVLAEINGDPLLVMGTYHKGKVCCFASDCS PHWGSPQFLQWEHYATFWCNVLHTIKK" regulatory complement(1464787..1464792) /regulatory_class="ribosome_binding_site" /gene="orf245" /locus_tag="STM1381" /note="putative RBS for orf245; RegulonDB:STMS1H001620" gene complement(1464797..1466030) /gene="orf408" /locus_tag="STM1382" /db_xref="GeneID:1252900" CDS complement(1464797..1466023) /gene="orf408" /locus_tag="STM1382" /note="ORF 408 (gi|4456874)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460347.1" /db_xref="GI:16764732" /db_xref="GeneID:1252900" /translation="MFKEERRHAIINLLIKDNSVSVSKLSDLYKVSQETIRSDLRYFQ KSGMLQRCYGGGILNRDALSKLITENKIDISSTIATPIHQDAKLRRENPKKAGKVCVL GSFNIDVSATVPWFPQSGESILASQFGFYPGGKGANQALAANNAGAAAHFIFKVGKDQ FSAFAMNHIIQSGITSYSAYQTDKAPTGSALIYVSAVDGDNIIAIYPGANMMLTTQEI NEQHRYIAESDVMLMQLETNIEALTEFIRLGKQENKMIMLNPAPYTKQVTHLLSDIDI ITPNETEASFLSGVTITDINDAKKAGNIILQSGVKKVIITLGARGSLICEHARTLYIP AWSAVVKDAAGAGDAFNGALAAALARQADMVAAIQYASAFASLAVEQVGASSMPQHLQ VLHRMRTQSNKVIHIN" regulatory complement(1466025..1466030) /regulatory_class="ribosome_binding_site" /gene="orf408" /locus_tag="STM1382" /note="putative RBS for orf408; RegulonDB:STMS1H001621" gene complement(1466346..1469416) /gene="ttrA" /locus_tag="STM1383" /db_xref="GeneID:1252901" CDS complement(1466346..1469408) /gene="ttrA" /locus_tag="STM1383" /note="tetrathionate reductase subunit A (TtrA) (gi|4456873)" /codon_start=1 /transl_table=11 /product="tetrathionate reductase subunit A" /protein_id="NP_460348.1" /db_xref="GI:16764733" /db_xref="GeneID:1252901" /translation="MANLTRRQWLKVGLAVGGMVTFGLSYRDVAKRAIDGLLNGTSGK VTRDRIFGNALIPEAQAQTHWQQNPQQTIAMTQCFGCWTQCGIRARVNADGKVIRIAG NPYHPLSQEHPIDSSVPFSEAMEQLAGESGLDARSTACARGATLLESLYSPLRLLEPM KRVGKRGEGKWQRISFEQLIEEVVEGGDLFGEGHVDGLRAIHAPDTPIDAKHPSFGPK TNQLLVTNTSDEGRDAFLRRFALNSFGSKNFGAHGAYCGLAYRAGSGALMGDLDKNPH VKPDWENVEFALFMGTSPAQSGNPFKRQARQLASARLRENFQYVVVAPALPLSTVLAD PRGRWQPVMPGSDSALAMGMIRWIMDNQRYNADYLAIPGVQAMQQAGEQSWTNATHLV IADELPTLAGQHLTLRHLTPDGEETPVVLNTDGELVDASTCRQARLFVTQYVTLADGQ RVTVKSGLQRLKEAAEKLSLAQYSEQCGVPEAQIIALAETFTSHGRKAAVISHGGMMA GNGFYNAWSVMMLNALIGNLSLSGGVFVGGGKFNGVSDGPRYNMNSFAGKVKPSGLSI ARSKTAYEASEEYRDKIAGGQSPYPAKAPWYPFVAGQLTELLTSALEGYPYPLKAWIS NMSNPFYGVPGLRAVAEEKLKDPRRLPLFIAIDAFMNETTALADYIVPDTHNFESWGF TAPWGGVASKATTARWPVVAPATHRTADGQPVSMEAFCIAVAKRLHLPGFGDRAITDP QGNTFPLNRAEDFYLRVAANIAFMGKTPVALANQEDISLTGVSRILPAIQHTLKADEV GRVAFIYSRGGRFAPEDSGYTEQRLGNAWKKPLQIWNADVAAHRHAITGERFSGCPVW YPARLSDGRAIDDQFPIGQWPLKLISFKSNTMSSSTAVIPRLHHVKPANLVALNPQDG ERYGLQHGDRVRIITPGGQVVAQISLLNGVMPGVIAIEHGYGHREMGATQHSLDGVPM PYDPQIRAGINLNDLGFADPTRTITNTWLDWVSGAAVRQGLPAKIERI" gene complement(1469401..1470431) /gene="ttrC" /locus_tag="STM1384" /db_xref="GeneID:1252902" CDS complement(1469401..1470423) /gene="ttrC" /locus_tag="STM1384" /note="tetrathionate reductase subunit C (TtrC) (gi|4456872)" /codon_start=1 /transl_table=11 /product="tetrathionate reductase subunit C" /protein_id="NP_460349.1" /db_xref="GI:16764734" /db_xref="GeneID:1252902" /translation="MTHSLIIEEVLAHPQDISWLPWAVQYFFFIGIAACAALFACYLH WRKKDAATEENRALLIAITCAITAPLALTADLHQTARVWHFYAWPTPWSWMPWGALFL PLFTGFLALWFLAQQIKRLFNKSYNVTKWLALASALCAVGLLIYTGREVSVVLARPIW FSYAFPVAMFLSALQAFFALMIVAARRDSVRLPKILWGQIWTLAALGLVVAMWVSGDT LSGTAIRQWITVALSAKYYAVGWVALWVCTLLFCSLALRHPLSQLRRVLLVLSALALC WLMRWTLLIQVQTVPKFNAQFNPYSLPGGTDGWLAILGTFGLWIALLIIIRETLNGLT RRLQHG" regulatory complement(1469411..1469416) /regulatory_class="ribosome_binding_site" /gene="ttrC" /locus_tag="STM1384" /note="putative RBS for ttrA; RegulonDB:STMS1H001622" gene complement(1470424..1471176) /gene="ttrB" /locus_tag="STM1385" /db_xref="GeneID:1252903" CDS complement(1470424..1471176) /gene="ttrB" /locus_tag="STM1385" /note="tetrathionate reductase subunit B (TtrB) (gi|4456871)" /codon_start=1 /transl_table=11 /product="tetrathionate reductase complex, subunit B" /protein_id="NP_460350.1" /db_xref="GI:16764735" /db_xref="GeneID:1252903" /translation="MWTGVNMDSSKRQFLQQLGVLTAGASLVPLAEAKFPFSPERHEG SPRHRYAMLIDLRRCIGCQSCTVSCTIENQTPQGAFRTTVNQYQVQREGSQEVTNVLL PRLCNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHETQ TADKCTFCVHRLEAGLLPACVESCVGGARIIGDIKDPHSRIATMLHQHRDAIKVLKPE NGTSPHVFYLGLDDAFVTPLMGRAQPALWQEV" regulatory complement(1470426..1470431) /regulatory_class="ribosome_binding_site" /gene="ttrB" /locus_tag="STM1385" /note="putative RBS for ttrC; RegulonDB:STMS1H001623" gene 1471334..1473118 /gene="ttrS" /locus_tag="STM1386" /db_xref="GeneID:1252904" regulatory 1471334..1471339 /regulatory_class="ribosome_binding_site" /gene="ttrS" /locus_tag="STM1386" /note="putative RBS for ttrS; RegulonDB:STMS1H001624" CDS 1471340..1473118 /gene="ttrS" /locus_tag="STM1386" /EC_number="2.7.3.-" /EC_number="2.7.1.40" /note="TtrS (gi|4456870)" /codon_start=1 /transl_table=11 /product="tetrathionate reductase complex: sensory transduction histidine kinase" /protein_id="NP_460351.1" /db_xref="GI:16764736" /db_xref="GeneID:1252904" /translation="MRGKTVRRLAVLAAVGLLCHGAWAGTWNIGILAMRGEASTRSHW QPLAKTLSQQLPGETFHIQPLDLHQMQEAVNQGTVQFVITNPAQFVQLNSHAPLRWLA SLRSTRDGKAVSNVIGSVILTRRDSGITTAHDLIGKTVGAIDAQAFGGYLLGYKALSD AGLRPERDFHLRFTGFPGDALVYMLREKAVQAAIVPVCLLENMDQEGLINKKDFIALL SRPTPLPCLTSTPLYPDWSFAALPAVSDALADRVTRALFNAPAAASFHWGAPASTSQV EALLRDVRQHPQQRRLWLDVKSWLIQHQLMVGGVILAFLLLTLNYIWVMLLVRRRGKQ LERNSVVLHQHERALETARQMSVLGEMTSGFAHELNQPLSAIRHYAQGCLIRLRAADE QHPLLPALEQIDQQAQRGADTLRNLRHWVSQAQGNPVLTEAWKAIAIREAIDHVWQLL RMAQQFPTVTLHTEVSAALRVTLPSVLLEQVLANIILNAAQAGATHLWIVAERTENGI SIVLQDNAGGIDEALLRQAFQPFMTTRKEGMGLGLAICQRLVRYGRGDISIRNQTAPD GLSGTVVTIHFLHENGGRDGDNSSTG" gene 1473088..1473713 /gene="ttrR" /locus_tag="STM1387" /db_xref="GeneID:1252905" regulatory 1473088..1473093 /regulatory_class="ribosome_binding_site" /gene="ttrR" /locus_tag="STM1387" /note="putative RBS for ttrR; RegulonDB:STMS1H001625" CDS 1473093..1473713 /gene="ttrR" /locus_tag="STM1387" /note="TtrR (gi|4456869)" /codon_start=1 /transl_table=11 /product="DNA-binding response regulator" /protein_id="NP_460352.3" /db_xref="GI:1109557622" /db_xref="GeneID:1252905" /translation="MATIHLLDDDTAVTNACAFLLESLGYDVKCWTQGADFLAQASLY QAGVVLLDMRMPVLDGQGVHDALRQCGSTLAVVFLTGHGDVPMAVEQMKRGAVDFLQK PVSVKPLQAALERALTVSSAAVARREIILCYQQLTPKERELASLVAKGFMNREIAEAM NIAVRTVEVHRARVMEKMQAGSLAELIRRFEKMASPETRIRTTYEP" gene 1473792..1474023 /gene="orf70" /locus_tag="STM1388" /db_xref="GeneID:1252906" regulatory 1473792..1473797 /regulatory_class="ribosome_binding_site" /gene="orf70" /locus_tag="STM1388" /note="putative RBS for orf70; RegulonDB:STMS1H001626" CDS 1473811..1474023 /gene="orf70" /locus_tag="STM1388" /note="hypothetical 7.9 Kda protein in ssrB-ttRr intergenic region (ORF70). (SW:YDHZ_SALTY)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460353.1" /db_xref="GI:16764738" /db_xref="GeneID:1252906" /translation="MTKPTKDDELYREMCRVVGKVVLEMRDLGQEPKYIVIAGVLRTA LANQRIQRSALEKQAMETVINALARS" gene complement(1474119..1475089) /gene="orf319" /locus_tag="STM1389" /db_xref="GeneID:1252907" CDS complement(1474119..1475078) /gene="orf319" /locus_tag="STM1389" /note="ORF 319 (gi|4456867)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460354.1" /db_xref="GI:16764739" /db_xref="GeneID:1252907" /translation="MNNKPVVGISGCLTGATVRFDGGHKRMDFVMNSLAPWVAYKPIC PEVAIGLPVPRPALRLIQTTCGDIRMRYSHAPHDDVTERMNAFADRFLPTIGELAGFI VCAKSPSCGMERVRLYDEKGNRGRKAGTGLFTAAMMDKYPWLPIEEDGRLHDPVLREN FIARIFALHELNALRAQGLSRHSLLAFHSRYKLQLLAHHQAGYREIGPFVARLHEWDD LDAFFVRYREKLMAILRHPASRKNHTNVLMHIQGYFHRALNSRQRAELREVILGYRAG RLPILAPLTLLKHYLAEHPDDYLRSQNYFEPYPDTLGLRLAIT" regulatory complement(1475084..1475089) /regulatory_class="ribosome_binding_site" /gene="orf319" /locus_tag="STM1389" /note="putative RBS for orf319; RegulonDB:STMS1H001627" gene complement(1475251..1475979) /gene="orf242" /locus_tag="STM1390" /db_xref="GeneID:1252908" CDS complement(1475251..1475979) /gene="orf242" /locus_tag="STM1390" /note="ORF 242 (gi|4456866)" /codon_start=1 /transl_table=11 /product="helix-turn-helix-type transcriptional regulator" /protein_id="NP_460355.1" /db_xref="GI:16764740" /db_xref="GeneID:1252908" /translation="MSYSIGEFARLCGINAATLRAWQRRYGLLKPQRTDGGHRLYSDD DIRQALSILDWVRKGVPISQVKPLLSRPVIRLGDNWITIQETMLQHLHEGRIDALRQL IYDCGREYPRAELVTHLLRPLRSKVSAHLPAVMTLREILDGIIIAYTSFCLEGDRKAP GNNAFISGWNLSDHCEIWLETLTRTGQELRLNVLPSPPVVLAPELFAQRKWFLVTTGK LTAGQKKQLAQWRNVVASLEVITL" gene complement(1476158..1476801) /gene="ssrB" /locus_tag="STM1391" /db_xref="GeneID:1252909" CDS complement(1476158..1476796) /gene="ssrB" /locus_tag="STM1391" /note="homologous with degU/uvrY/bvgA; SsrB (gi|2765824)" /codon_start=1 /transl_table=11 /product="DNA-binding response regulator" /protein_id="NP_460356.1" /db_xref="GI:16764741" /db_xref="GeneID:1252909" /translation="MKEYKILLVDDHEIIINGIMNALLPWPHFKIVEHVKNGLEVYNA CCAYEPDILILDLSLPGINGLDIIPQLHQRWPAMNILVYTAYQQEYMTIKTLAAGANG YVLKSSSQQVLLAALQTVAVNKRYIDPTLNREAILAELNADTTNHQLLTLRERQVLKL IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRLIEY" regulatory complement(1476796..1476801) /regulatory_class="ribosome_binding_site" /gene="ssrB" /locus_tag="STM1391" /note="putative RBS for ssrB; RegulonDB:STMS1H001628" gene complement(1476827..1479596) /gene="ssrA" /locus_tag="STM1392" /db_xref="GeneID:1252910" CDS complement(1476827..1479589) /gene="ssrA" /locus_tag="STM1392" /EC_number="2.7.3.-" /EC_number="2.7.1.40" /note="SpiR (gi|1498305)" /codon_start=1 /transl_table=11 /product="hybrid sensor histidine kinase/response regulator" /protein_id="NP_460357.1" /db_xref="GI:16764742" /db_xref="GeneID:1252910" /translation="MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQ KRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLS VGPSNCTPTLNGEKHRLFLQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQP LTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLP LDDSIRVWLDQNNHLLPFSYIPQKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSL VTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTA TAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQALNEAKKRAERA NKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTLSLLAIINN LLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVPLYFHTD SIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQIFTAF YQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIKGT LSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFSGKLYDLAQQLILCTPNMPVINN LLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLIDI RMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLA TLARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAV SAGEKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIF KNYTIT" regulatory complement(1479591..1479596) /regulatory_class="ribosome_binding_site" /gene="ssrA" /locus_tag="STM1392" /note="putative RBS for ssrA; RegulonDB:STMS1H001629" gene 1479990..1480391 /gene="ssaB" /locus_tag="STM1393" /db_xref="GeneID:1252911" CDS 1479990..1480391 /gene="ssaB" /locus_tag="STM1393" /note="SpiC (gi|1498306)" /codon_start=1 /transl_table=11 /product="pathogenicity island chaperone protein SpiC" /protein_id="NP_460358.1" /db_xref="GI:16764743" /db_xref="GeneID:1252911" /translation="MSEEGFMLAVLKGIPLIQDIRAEGNSRSWIMTIDGHPARGEIFS EAFSISLFLNDLESLPKPCLAYVTLLLAAHPDVHDYAIQLTADGGWLNGYYTTSSSSE LIAIEIEKHLALTCILKNVIRNHHKLYSGGV" gene 1480387..1481886 /gene="ssaC" /locus_tag="STM1394" /db_xref="GeneID:1252912" regulatory 1480387..1480392 /regulatory_class="ribosome_binding_site" /gene="ssaC" /locus_tag="STM1394" /note="putative RBS for ssaC; RegulonDB:STMS1H001630" CDS 1480393..1481886 /gene="ssaC" /locus_tag="STM1394" /note="SpiA (gi|1498307)" /codon_start=1 /transl_table=11 /product="EscC/YscC/HrcC family type III secretion system outer membrane ring protein" /protein_id="NP_460359.1" /db_xref="GI:16764744" /db_xref="GeneID:1252912" /translation="MVVNKRLILILLFILNTAKSDELSWKGNDFTLYARQMPLAEVLH LLSENYDTAITISPLITATFSGKIPPGPPVDILNNLAAQYDLLTWFDGSMLYVYPASL LKHQVITFNILSTGRFIHYLRSQNILSSPGCEVKEITGTKAVEVSGVPSCLTRISQLA SVLDNALIKRKDSAVSVSIYTLKYATAMDTQYQYRDQSVVVPGVVSVLREMSKTSVPT SSTNNGSPATQALPMFAADPRQNAVIVRDYAANMAGYRKLITELDQRQQMIEISVKII DVNAGDINQLGIDWGTAVSLGGKKIAFNTGLNDGGASGFSTVISDTSNFMVRLNALEK SSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITTGSLLRVTPRLLND NGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQI HSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLIKASVVNNGISHG" gene 1481867..1483078 /gene="ssaD" /locus_tag="STM1395" /db_xref="GeneID:1252913" CDS 1481867..1483078 /gene="ssaD" /locus_tag="STM1395" /note="SpiB (gi|1498308)" /codon_start=1 /transl_table=11 /product="EscD/YscD/HrpQ family type III secretion system inner membrane ring protein" /protein_id="NP_460360.1" /db_xref="GI:16764745" /db_xref="GeneID:1252913" /translation="MAYLMVNPKSSWKIRFLGHVLQGREVWLNEGNLSLGEKGCDICI PLAINEKIILREQADSLFVDAGKARVRVNGRRFNPNKPLPSSGVLQVAGVAIAFGKQD CELADYQIPVSRSGYWWLAGVFLIFIGGMGVLLSISGQPETVNDLPLRVKFLLDKSNI HYVRAQWKEDGSLQLSGYCSSSEQMQKVRATLESWGVMYRDGVICDDLLVREVQDVLI KMGYPHAEVSSEGPGSVLIHDDIQMDQQWRKVQPLLADIPGLLHWQISHSHQSQGDDI ISAIIENGLVGLVNVTPMRRSFVISGVLDESHQRILQETLAALKKKDPALSLIYQDIA PSHDESKYLPAPVAGFVQSRHGNYLLLTNKERLRVGALLPNGGEIVHLSADVVTIKHY DTLINYPLDFK" gene 1483080..1483328 /gene="ssaE" /locus_tag="STM1396" /db_xref="GeneID:1252914" regulatory 1483080..1483085 /regulatory_class="ribosome_binding_site" /gene="ssaE" /locus_tag="STM1396" /note="putative RBS for ssaE; RegulonDB:STMS1H001631" CDS 1483086..1483328 /gene="ssaE" /locus_tag="STM1396" /note="putative secretory apparatus component (gi|3377860)" /codon_start=1 /transl_table=11 /product="EscE/YscE/SsaE family type III secretion system needle protein co-chaperone" /protein_id="NP_460361.1" /db_xref="GI:16764746" /db_xref="GeneID:1252914" /translation="MTTLTRLEDLLLHSREEAKGIILQLRAARKQLEENNGKLQDPQQ YQQNTLLLEAIEQAENIINIIYYRYHNSALVVSEQE" gene 1483585..1483918 /gene="sseA" /locus_tag="STM1397" /db_xref="GeneID:1252915" regulatory 1483585..1483590 /regulatory_class="ribosome_binding_site" /gene="sseA" /locus_tag="STM1397" /note="putative RBS for sseA; RegulonDB:STMS1H001632" CDS 1483592..1483918 /gene="sseA" /locus_tag="STM1397" /note="SseA (gi|3377861)" /codon_start=1 /transl_table=11 /product="type III secretion system chaperone SseA" /protein_id="NP_460362.1" /db_xref="GI:16764747" /db_xref="GeneID:1252915" /translation="MMIKKKAAFSEYRDLEQSYMQLNHCLKKFHQIRAKVSQQLAERA ESPKNSRETESILHNLFPQGVAGVNQEAEKDLKKIVSLFKQLEVRLKQLNAQAPVEIP SGKTKR" gene 1483919..1484515 /gene="sseB" /locus_tag="STM1398" /db_xref="GeneID:1252916" regulatory 1483919..1483924 /regulatory_class="ribosome_binding_site" /gene="sseB" /locus_tag="STM1398" /note="putative RBS for sseB; RegulonDB:STMS1H001633" CDS 1483925..1484515 /gene="sseB" /locus_tag="STM1398" /note="putative secreted protein (gi|3377862)" /codon_start=1 /transl_table=11 /product="pathogenicity island 2 effector protein SseB" /protein_id="NP_460363.1" /db_xref="GI:16764748" /db_xref="GeneID:1252916" /translation="MSSGNILWGSQNPIVFKNSFGVSNADTGSQDDLSQQNPFAEGYG VLLILLMVIQAIANNKFIEVQKNAERARNTQEKSNEMDEVIAKAAKGDAKTKEEVPED VIKYMRDNGILIDGMTIDDYMAKYGDHGKLDKGGLQAIKAALDNDANRNTDLMSQGQI TIQKMSQELNAVLTQLTGLISKWGEISSMIAQKTYS" gene 1484507..1484985 /gene="sscA" /locus_tag="STM1399" /db_xref="GeneID:1252917" regulatory 1484507..1484512 /regulatory_class="ribosome_binding_site" /gene="sscA" /locus_tag="STM1399" /note="putative RBS for sscA; RegulonDB:STMS1H001634" CDS 1484512..1484985 /gene="sscA" /locus_tag="STM1399" /note="putative secretion chaperone (gi|3377863)" /codon_start=1 /transl_table=11 /product="CesD/SycD/LcrH family type III secretion system chaperone" /protein_id="NP_460364.1" /db_xref="GI:16764749" /db_xref="GeneID:1252917" /translation="MKKDPTLQQAHDTMRFFRRGGSLRMLLDDDVTQPLNTLYRYATQ LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA PQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQLSDRS" gene 1484980..1486442 /gene="sseC" /locus_tag="STM1400" /db_xref="GeneID:1252918" regulatory 1484980..1484985 /regulatory_class="ribosome_binding_site" /gene="sscA" /locus_tag="STM1399" /note="putative RBS for sseC; RegulonDB:STMS1H001635" CDS 1484988..1486442 /gene="sseC" /locus_tag="STM1400" /note="SseC (gi|3377864)" /codon_start=1 /transl_table=11 /product="pathogenicity island 2 effector protein SseC" /protein_id="NP_460365.1" /db_xref="GI:16764750" /db_xref="GeneID:1252918" /translation="MNRIHSNSDSAAGVTALTHHHLSNVSCVSSGSLGKRQHRVNSTF GDGNAACLLSGKISLQEASNALKQLLDAVPGNHKRPSLPDFLQTNPAVLSMMMTSLIL NVFGNNAQSLCQQLERATEVQNALRNKQVKEYQEQIQKAIEQEDKARKAGIFGAIFDW ITGIFETVIGALKVVEGFLSGNPAEMASGVAYMAAGCAGMVKAGAETAMMCGADHDTC QAIIDVTSKIQFGCEAVALALDVFQIGRAFMATRGLSGAAAKVLDSGFGEEVVERMVG AGEAEIEELAEKFGEEVSESFSKQFEPLEREMAMANEMAEEAAEFSRNVENNMTRSAG KSFTKEGVKAMAKEAAKEALEKCVQEGGKFLLKKFRNKVLFNMFKKILYALLRDCSFK GLQAIRCATEGASQMNTGMVNTEKAKIEKKIEQLITQQRFLDFIMQQTENQKKIEQKR LEELYKGSGAALRDVLDTIDHYSSVQARIAGYRA" gene 1486451..1487045 /gene="sseD" /locus_tag="STM1401" /db_xref="GeneID:1252919" regulatory 1486451..1486456 /regulatory_class="ribosome_binding_site" /gene="sseD" /locus_tag="STM1401" /note="putative RBS for sseD; RegulonDB:STMS1H001636" CDS 1486458..1487045 /gene="sseD" /locus_tag="STM1401" /note="SseD (gi|3776122)" /codon_start=1 /transl_table=11 /product="pathogenicity island 2 effector protein SseD" /protein_id="NP_460366.1" /db_xref="GI:16764751" /db_xref="GeneID:1252919" /translation="MEASNVALVLPAPSLLTPSSTPSPSGEGMGTESMLLLFDDIWMK LMELAKKLRDIMRSYNVEKQRLAWELQVNVLQTQMKTIDEAFRASMITAGGAMLSGVL TIGLGAVGGETGLIAGQAVGHTAGGVMGLGAGVAQRQSDQDKAIADLQQNGAQSYNKS LTEIMEKATEIMQQIIGVGSSLVTVLAEILRALTR" gene 1487042..1487464 /gene="sseE" /locus_tag="STM1402" /db_xref="GeneID:1252920" regulatory 1487042..1487047 /regulatory_class="ribosome_binding_site" /gene="sseE" /locus_tag="STM1402" /note="putative RBS for sseE; RegulonDB:STMS1H001637" CDS 1487048..1487464 /gene="sseE" /locus_tag="STM1402" /note="SseE (gi|3377866)" /codon_start=1 /transl_table=11 /product="pathogenicity island 2 effector protein SseE" /protein_id="NP_460367.1" /db_xref="GI:16764752" /db_xref="GeneID:1252920" /translation="MVQEIEQWLRRHQVFTEPAYLGETAILLGQQFILSPYLVIYRIE AKEMIICEFRRLTPGQPRPQQLFHLLGLLRGIFVHHPQLTCLKMLIITDVLDEKKAML RRKLLRILTVMGATFTQLDGDNWTVLSAEHLIQRRF" gene 1487516..1487950 /gene="sscB" /locus_tag="STM1403" /db_xref="GeneID:1252921" CDS 1487516..1487950 /gene="sscB" /locus_tag="STM1403" /note="SscB (gi|3377867)" /codon_start=1 /transl_table=11 /product="CesD/SycD/LcrH family type III secretion system chaperone" /protein_id="NP_460368.1" /db_xref="GI:16764753" /db_xref="GeneID:1252921" /translation="MMMKEDQKNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAV IDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCL KMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDTLIA" gene 1487962..1488748 /gene="sseF" /locus_tag="STM1404" /db_xref="GeneID:1252922" regulatory 1487962..1487967 /regulatory_class="ribosome_binding_site" /gene="sseF" /locus_tag="STM1404" /note="putative RBS for sseF; RegulonDB:STMS1H001638" CDS 1487966..1488748 /gene="sseF" /locus_tag="STM1404" /note="SseF (gi|3377868)" /codon_start=1 /transl_table=11 /product="pathogenicity island 2 effector protein SseF" /protein_id="NP_460369.1" /db_xref="GI:16764754" /db_xref="GeneID:1252922" /translation="MKIHIPSAASNIVDGNSPPSDIQAKEVSFPPPEIPAPGTPAAPV LLTPEQIRQQRDYAIHFMQYTIRALGATVVFGLSVAAAVISGGAGLPIAILAGAALVI AIGDACCAYHNYQSICQQKEPLQTASDSVALVVSALALKCGASLNCANTLANCLSLLI RSGIAISMLVLPLQFPLPAAENIAASLDMGSVITSVSLTAIGAVLDYCLARPSGDDQE NSVDELHADPSVLLAEQMAALCQSATTPALMDSSDHTSRGEP" gene 1488741..1489434 /gene="sseG" /locus_tag="STM1405" /db_xref="GeneID:1252923" regulatory 1488741..1488746 /regulatory_class="ribosome_binding_site" /gene="sseG" /locus_tag="STM1405" /note="putative RBS for sseG; RegulonDB:STMS1H001639" CDS 1488745..1489434 /gene="sseG" /locus_tag="STM1405" /note="SseG (gi|3377858)" /codon_start=1 /transl_table=11 /product="pathogenicity island 2 effector protein SseG" /protein_id="NP_460370.1" /db_xref="GI:16764755" /db_xref="GeneID:1252923" /translation="MKPVSPNAQVGGQRPVNAPEESPPCPSLPHPETNMESGRIGPQQ GKERVLAGLAKRVIECFPKEIFSWQTVILGGQILCCSAGIALTVLSGGGAPLVALAGI GLAIAIADVACLIYHHKHHLPMAHDSIGNAVFYIANCFANQRKSMAIAKAVSLGGRLA LTATVMTHSYWSGSLGLQPHLLERLNDITYGLMSFTRFGMDGMAMTGMQVSSPLYRLL AQVTPEQRAPE" gene 1489521..1489743 /gene="ssaG" /locus_tag="STM1406" /db_xref="GeneID:1252924" regulatory 1489521..1489526 /regulatory_class="ribosome_binding_site" /gene="ssaG" /locus_tag="STM1406" /note="putative RBS for ssaG; RegulonDB:STMS1H001640" CDS 1489528..1489743 /gene="ssaG" /locus_tag="STM1406" /note="SsaH (gi|2460267)" /codon_start=1 /transl_table=11 /product="secretion system apparatus" /protein_id="NP_460371.1" /db_xref="GI:16764756" /db_xref="GeneID:1252924" /translation="MDIAQLVDMLSHMAHQAGQAINDKMNGNDLLNPESMIKAQFALQ QYSTFINYESSLIKMIKDMLSGIIAKI" gene 1489778..1490011 /gene="ssaH" /locus_tag="STM1407" /db_xref="GeneID:1252925" regulatory 1489778..1489783 /regulatory_class="ribosome_binding_site" /gene="ssaH" /locus_tag="STM1407" /note="putative RBS for ssaH; RegulonDB:STMS1H001641" CDS 1489784..1490011 /gene="ssaH" /locus_tag="STM1407" /note="SsaH (gi|3776128)" /codon_start=1 /transl_table=11 /product="secretion system apparatus" /protein_id="NP_460372.1" /db_xref="GI:16764757" /db_xref="GeneID:1252925" /translation="MFAGVNHSLISQVHAMLPALTVIVPDKKLQLVCLALLLAGLNEP LKAAKILSDIDLPEAMALRLLFPAPNEGFEN" gene 1490023..1490271 /gene="ssaI" /locus_tag="STM1408" /db_xref="GeneID:1252926" CDS 1490023..1490271 /gene="ssaI" /locus_tag="STM1408" /note="SsaI (gi|3776129)" /codon_start=1 /transl_table=11 /product="EscI/YscI/HrpB family type III secretion system inner rod protein" /protein_id="NP_460373.1" /db_xref="GI:16764758" /db_xref="GeneID:1252926" /translation="MSVVPVSTQSYVKSSAEPSQEQINFFEQLLKDEASTSNASALLP QVMLTRQMDYMQLTVGVDYLARISGAASQALNKLDNMA" gene 1490262..1491017 /gene="ssaJ" /locus_tag="STM1409" /db_xref="GeneID:1252927" regulatory 1490262..1490267 /regulatory_class="ribosome_binding_site" /gene="ssaI" /locus_tag="STM1408" /note="putative RBS for ssaJ; RegulonDB:STMS1H001642" CDS 1490268..1491017 /gene="ssaJ" /locus_tag="STM1409" /note="homology with the yscJ/mxiJ/prgK family of lipoproteins; secretion system apparatus lipoprotein SSAJ precursor. (SW:SSAJ_SALTY)" /codon_start=1 /transl_table=11 /product="EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein" /protein_id="NP_460374.1" /db_xref="GI:16764759" /db_xref="GeneID:1252927" /translation="MKVHRIVFLTVLTFFLTACDVDLYRSLPEDEANQMLALLMQHHI DAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFTTADKMFPANQLVVSPQEEQQ KINFLKEQRIEGMLSQMEGVINAKVTIALPTYDEGSNASPSSVAVFIKYSPQVNMEAF RVKIKDLIEMSIPGLQYSKISILMQPAEFRMVADVPARQTFWIMDVINANKGKVVKWL MKYPYPLMLSLTGLLLGVGILIGYFCLRRRF" gene 1491035..1491583 /locus_tag="STM1410" /db_xref="GeneID:1252928" CDS 1491035..1491583 /locus_tag="STM1410" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460375.1" /db_xref="GI:16764760" /db_xref="GeneID:1252928" /translation="MLQLYRYFWQPARYAVPEWLDKLGFHLSNCWRYGDRPELDRLLD RALNRLRGSSVIPACLNDRQKRQVRLAPRISAFAFGLGLFKLRCSDYFMLPEYRQLLL QWFSEDEIWQLYGWLGQRDGKLLPPQVMQQTALQIGTAILNREAHDDAVLHALLVLLP PPQRILWPKTSLTEIIFMEHLL" gene 1491574..1492254 /gene="ssaK" /locus_tag="STM1411" /db_xref="GeneID:1252929" regulatory 1491574..1491579 /regulatory_class="ribosome_binding_site" /locus_tag="STM1410" /note="putative RBS for ssaK; RegulonDB:STMS1H001643" CDS 1491580..1492254 /gene="ssaK" /locus_tag="STM1411" /note="secretion system apparatus protein SSAK. (SW:SSAK_SALTY)" /codon_start=1 /transl_table=11 /product="type III secretion system protein SsaK" /protein_id="NP_460376.1" /db_xref="GI:16764761" /db_xref="GeneID:1252929" /translation="MSFTSLPLTEINHKLPARNIIESQWITLQLTLFAQEQQAKRVSH AIVSSAYRKAEKIIRDAYRYQREQKVEQQQELACLRKNTLEKMEVEWLEQHVKHLQDD ENQFRSLVDHAAHHIKNSIEQVLLAWFDQQSVDSVMCHRLARQATAMAEEGALYLRIH PEKEALMRETFGKRFTLIIEPGFSPDQAELSSTRYAVEFSLSRHFNALLKWLRNGEDK RGSDEY" gene 1492216..1493236 /gene="ssaL" /locus_tag="STM1412" /db_xref="GeneID:1252930" regulatory 1492216..1492221 /regulatory_class="ribosome_binding_site" /gene="ssaK" /locus_tag="STM1411" /note="putative RBS for ssaL; RegulonDB:STMS1H001644" CDS 1492220..1493236 /gene="ssaL" /locus_tag="STM1412" /note="secretion system apparatus protein SSAL. (SW:SSAL_SALTY)" /codon_start=1 /transl_table=11 /product="secretion system apparatus protein" /protein_id="NP_460377.1" /db_xref="GI:16764762" /db_xref="GeneID:1252930" /translation="MVKIKEVAMNIKINEIKMTPPTAFTPGQVIEEQEVISPSMLALQ ELQETTGAALYETMEEIGMALSGKLRENYKFTDAEKLERRQQALLRLIKQIQEDNGAT LRPLTEENSDPDLQNAYQIIALAMALTAGGLSKKKKRDLQSQLDTLTAEEGWELAVFS LLELGEVDTATLSSLKRFMQQAIDNDEMPLSQWFRRVADWPDRCERVRILLRAVAFEL SICIEPSEQSRLAAALVRLRRLLLFLGLEKECQREEWICQLPPNTLLPLLLDIICERW LFSDWLLDRLTAIVSSSKMFNRLLQQLDAQFMLIPDNCFNDEDQREQILETLREVKIN QVLF" gene 1493288..1493662 /gene="ssaM" /locus_tag="STM1413" /db_xref="GeneID:1252931" regulatory 1493288..1493293 /regulatory_class="ribosome_binding_site" /gene="ssaM" /locus_tag="STM1413" /note="putative RBS for ssaM; RegulonDB:STMS1H001645" CDS 1493294..1493662 /gene="ssaM" /locus_tag="STM1413" /note="secretion system apparatus protein SSAM. (SW:SSAM_SALTY)" /codon_start=1 /transl_table=11 /product="type III secretion system protein SsaM" /protein_id="NP_460378.1" /db_xref="GI:16764763" /db_xref="GeneID:1252931" /translation="MDWDLITERNIQLFIQLAGLAERPLATNMFWRQGQYETYLNYHN GRIHLCQILKQTFLDEELLFKALANWKPAAFQGIPQRLFLLRDGLAMSCSPPLSSSAE LWLRLHHRQIKFLESQCVHG" gene 1493640..1495692 /gene="ssaV" /locus_tag="STM1414" /db_xref="GeneID:1252932" regulatory 1493640..1493645 /regulatory_class="ribosome_binding_site" /gene="ssaM" /locus_tag="STM1413" /note="putative RBS for ssaV; RegulonDB:STMS1H001646" CDS 1493647..1495692 /gene="ssaV" /locus_tag="STM1414" /note="homology with the LcrD family of proteins; secretion system apparatus protein SSAV. (SW:SSAV_SALTY)" /codon_start=1 /transl_table=11 /product="EscV/YscV/HrcV family type III secretion system export apparatus protein" /protein_id="NP_460379.1" /db_xref="GI:16764764" /db_xref="GeneID:1252932" /translation="MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTW MVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQH NAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGK QMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNII GGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNL ATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPIILIRRKKSVVS ANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEV LPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDM AHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQ RQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHIL RRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSA KLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDLSEEELADNEE" gene 1495674..1496983 /gene="ssaN" /locus_tag="STM1415" /db_xref="GeneID:1252933" regulatory 1495674..1495679 /regulatory_class="ribosome_binding_site" /gene="ssaN" /locus_tag="STM1415" /note="putative RBS for ssaN; RegulonDB:STMS1H001647" CDS 1495682..1496983 /gene="ssaN" /locus_tag="STM1415" /EC_number="3.6.3.14" /EC_number="2.7.1.40" /note="homology with the YscN family of proteins; probable secretion system apparatus ATP synthase SSAN. (SW:SSAN_SALTY)" /codon_start=1 /transl_table=11 /product="EscN/YscN/HrcN family type III secretion system ATPase" /protein_id="NP_460380.1" /db_xref="GI:16764765" /db_xref="GeneID:1252933" /translation="MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGE LCCIKPGEELAEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVI DGFGRPLDGRELPDVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGI FSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE YPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALYQEVELLIRIGEYQRGV DTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE" gene 1496986..1497363 /gene="ssaO" /locus_tag="STM1416" /db_xref="GeneID:1252934" CDS 1496986..1497363 /gene="ssaO" /locus_tag="STM1416" /note="secretion system apparatus protein SSAO. (SW:SSAO_SALTY)" /codon_start=1 /transl_table=11 /product="type III secretion system protein SsaO" /protein_id="NP_460381.1" /db_xref="GI:16764766" /db_xref="GeneID:1252934" /translation="METLLEIIARREKQLRGKLTVLDQQQQAIITEQQICQTRALAVS TRLKELMGWQGTLSCHLLLDKKQQMAGLFTQAQSFLTQRQQLENQYQQLVSRRSELQK NFNALMKKKEKITMVLSDAYYQS" gene 1497339..1497718 /gene="ssaP" /locus_tag="STM1417" /db_xref="GeneID:1252935" regulatory 1497339..1497344 /regulatory_class="ribosome_binding_site" /gene="ssaO" /locus_tag="STM1416" /note="putative RBS for ssaP; RegulonDB:STMS1H001648" CDS 1497344..1497718 /gene="ssaP" /locus_tag="STM1417" /note="secretion system apparatus protein SSAP. (SW:SSAP_SALTY)" /codon_start=1 /transl_table=11 /product="type III secretion system protein SsaP" /protein_id="NP_460382.1" /db_xref="GI:16764767" /db_xref="GeneID:1252935" /translation="MRITKVEGSLGLPCQSYQDDNEAEAERMDFEQLMHQALPIGENN PPAALNKNVVFTQRYRVSGGYLDGVECEVCESGGLIQLRINVPHHEIYRSMKALKQWL ESQLLHMGYIISLEIFYVKNSE" gene 1497692..1498667 /gene="ssaQ" /locus_tag="STM1418" /db_xref="GeneID:1252936" regulatory 1497692..1497697 /regulatory_class="ribosome_binding_site" /gene="ssaP" /locus_tag="STM1417" /note="putative RBS for ssaQ; RegulonDB:STMS1H001649" CDS 1497699..1498667 /gene="ssaQ" /locus_tag="STM1418" /note="secretion system apparatus protein SSAQ. (SW:SSAQ_SALTY)" /codon_start=1 /transl_table=11 /product="type III secretion system protein SsaQ" /protein_id="NP_460383.1" /db_xref="GI:16764768" /db_xref="GeneID:1252936" /translation="MLRIANEERPWVEILPTQGATIGELTLSMQQYPVQQGTLFTINY HNELGRVWIAEQCWQRWCEGLIGTANRSAIDPELLYGIAEWGLAPLLQASDATLCQNE PPTSCSNLPHQLALHIKWTVEEHEFHSIIFTWPTGFLRNIVGELSAERQQIYPAPPVV VPVYSGWCQLTLIELESIEIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMK FDELVQDIETLLASGSPMSKSDGTSSVELEQIPQQVLFEVGRASLEIGQLRQLKTGDV LPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRITRWYLCKNTA" gene 1498732..1499382 /gene="ssaR" /locus_tag="STM1419" /db_xref="GeneID:1252937" regulatory 1498732..1498737 /regulatory_class="ribosome_binding_site" /gene="ssaR" /locus_tag="STM1419" /note="putative RBS for ssaR; RegulonDB:STMS1H001650" CDS 1498735..1499382 /gene="ssaR" /locus_tag="STM1419" /note="homology with YscR of the secretion system of Yersinia; virulence protein yscr (SW:YSCR_SALTY)" /codon_start=1 /transl_table=11 /product="EscR/YscR/HrcR family type III secretion system export apparatus protein" /protein_id="NP_460384.1" /db_xref="GI:16764769" /db_xref="GeneID:1252937" /translation="MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNAL GIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYR QFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLI YLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS" gene 1499375..1499645 /gene="ssaS" /locus_tag="STM1420" /db_xref="GeneID:1252938" regulatory 1499375..1499380 /regulatory_class="ribosome_binding_site" /gene="ssaS" /locus_tag="STM1420" /note="putative RBS for ssaS; RegulonDB:STMS1H001651" CDS 1499379..1499645 /gene="ssaS" /locus_tag="STM1420" /note="homology with YscS of the secretion system of Yersinia; secretion system apparatus protein SSAS. (SW:SSAS_SALTY)" /codon_start=1 /transl_table=11 /product="EscS/YscS/HrcS family type III secretion system export apparatus protein" /protein_id="NP_460385.1" /db_xref="GI:16764770" /db_xref="GeneID:1252938" /translation="MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQI QDQTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQIMLRIGEHG" gene 1499641..1500425 /gene="ssaT" /locus_tag="STM1421" /db_xref="GeneID:1252939" regulatory 1499641..1499646 /regulatory_class="ribosome_binding_site" /gene="ssaT" /locus_tag="STM1421" /note="putative RBS for ssaT; RegulonDB:STMS1H001652" CDS 1499646..1500425 /gene="ssaT" /locus_tag="STM1421" /note="homology with YscT of the secretion system of Yersinia; secretion system apparatus protein SSAT. (SW:SSAT_SALTY)" /codon_start=1 /transl_table=11 /product="EscT/YscT/HrcT family type III secretion system export apparatus protein" /protein_id="NP_460386.1" /db_xref="GI:16764771" /db_xref="GeneID:1252939" /translation="MAQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVL MSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVDMAGFLL DTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPG RTLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFS MPLKSILVLLTLLISFPYALHHYLVESDKFYIYLKDWFPSV" gene 1500417..1501480 /gene="ssaU" /locus_tag="STM1422" /db_xref="GeneID:1252940" regulatory 1500417..1500422 /regulatory_class="ribosome_binding_site" /gene="ssaT" /locus_tag="STM1421" /note="putative RBS for ssaU; RegulonDB:STMS1H001653" CDS 1500422..1501480 /gene="ssaU" /locus_tag="STM1422" /note="homology with YscU of the secretion system of Yersinia; secretion system apparatus protein SSAU. (SW:SSAU_SALTY)" /codon_start=1 /transl_table=11 /product="EscU/YscU/HrcU family type III secretion system export apparatus switch protein" /protein_id="NP_460387.1" /db_xref="GI:16764772" /db_xref="GeneID:1252940" /translation="MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF TEKMILILIESITFTLQLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVF LQVGVVIASKAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYY ASTFRALPYCGLACGVLVVSSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKD DVKQEHKDLEGDPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTD MPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVA ALLRMVMKIDYAHSTETP" gene complement(1501631..1501704) /gene="valW" /locus_tag="STM1423" /db_xref="GeneID:1252941" tRNA complement(1501631..1501704) /gene="valW" /locus_tag="STM1423" /product="tRNA-Val" /db_xref="GeneID:1252941" gene complement(1501718..1501791) /gene="valV" /locus_tag="STM1424" /db_xref="GeneID:1252942" tRNA complement(1501718..1501791) /gene="valV" /locus_tag="STM1424" /product="tRNA-Val" /db_xref="GeneID:1252942" gene complement(1501953..1503337) /gene="ydhE" /locus_tag="STM1425" /db_xref="GeneID:1252943" CDS complement(1501953..1503326) /gene="ydhE" /locus_tag="STM1425" /note="similar to E. coli putative transport protein (AAC74735.1); Blastp hit to AAC74735.1 (457 aa), 92% identity in aa 1 - 457" /codon_start=1 /transl_table=11 /product="MATE family efflux transporter" /protein_id="NP_460388.2" /db_xref="GI:1109557623" /db_xref="GeneID:1252943" /translation="MQKYTSEARQLLALAIPVILAQVAQTAMGFVDTVMAGGYSATDM AAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLV MIVLWNAGYIIRSMHNIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPG MVMGFLGLLVNIPVNYIFIYGHFGMPELGGIGCGVATAAVYWVMFIAMLSYIKHARSM RDIRNEKGFGKPDSVVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQI ALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLGVGICMAVVTAIFTV TLRKHIALLYNDNPEVVALAAQLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFFITF TAYWVLGLPSGYILALTDLVVDRMGPAGFWMGFIIGLTSAAVLMMLRMRYLQRQPSAI ILQRAAR" regulatory complement(1503332..1503337) /regulatory_class="ribosome_binding_site" /gene="ydhE" /locus_tag="STM1425" /note="putative RBS for ydhE; RegulonDB:STMS1H001654" gene 1503529..1504184 /gene="ribE" /locus_tag="STM1426" /db_xref="GeneID:1252944" regulatory 1503529..1503534 /regulatory_class="ribosome_binding_site" /gene="ribE" /locus_tag="STM1426" /note="putative RBS for ribE; RegulonDB:STMS1H001655" CDS 1503543..1504184 /gene="ribE" /locus_tag="STM1426" /EC_number="2.5.1.9" /note="similar to E. coli riboflavin synthase, alpha chain (AAC74734.1); Blastp hit to AAC74734.1 (213 aa), 90% identity in aa 1 - 208" /codon_start=1 /transl_table=11 /product="riboflavin synthase subunit alpha" /protein_id="NP_460389.1" /db_xref="GI:16764774" /db_xref="GeneID:1252944" /translation="MFTGIVQGTAKLVSIDEKPNFRTHVVTLPDYMLEGLETGASVAH NGCCLTVTEINGNQISFDLMKETLRITNLGALRVGDEVNVERAAKFSDEIGGHLMSGH IITTAEIAKILTSENNHQVWFKVQDASLMKYILYKGFIGVDGISLTVGEVTPTRFCVH LIPETLERTTLGRKKLGERVNIEIDPQTQAVVDTVERVLAARENAVRNQADIG" gene complement(1504226..1505385) /gene="cfa" /locus_tag="STM1427" /db_xref="GeneID:1252945" CDS complement(1504226..1505374) /gene="cfa" /locus_tag="STM1427" /EC_number="2.1.1.79" /note="similar to E. coli cyclopropane fatty acyl phospholipid synthase (AAC74733.1); Blastp hit to AAC74733.1 (382 aa), 90% identity in aa 1 - 382" /codon_start=1 /transl_table=11 /product="cyclopropane-fatty-acyl-phospholipid synthase" /protein_id="NP_460390.1" /db_xref="GI:16764775" /db_xref="GeneID:1252945" /translation="MSSSCIEEVSVPDDNWYRIANELLSRADITINGSAPSDIRVKNP DFFKRVLQEGSLGLGESYMDGWWECERLDIFFSKVLRAGLENQLPHHVKDTLRILGAR LINLQSKKRAWIVGKEHYDLGNDLFSRMLDPYMQYSCAYWKDADTLEAAQQAKLKLIC EKLQLQPGMRVLDIGCGWGGLSQYMATHYGVSVVGVTISAEQQKMAQTRCEGLDVSIL LEDYRDLNDQFDRIVSVGMFEHVGPKNYNTYFEVVDRNLKPDGLFLLHTIGSKKTDHN VDPWINKYIFPNGCLPSVRQIAEASESHFVMEDWHNFGADYDTTLMAWHERFINAWPE IAGNYNERFKRMFSYYLNACAGAFRARDIQLWQVVFTRGVENGLRVPR" regulatory complement(1505380..1505385) /regulatory_class="ribosome_binding_site" /gene="cfa" /locus_tag="STM1427" /note="putative RBS for cfa; RegulonDB:STMS1H001656" gene complement(1505664..1506880) /gene="ydhC" /locus_tag="STM1428" /db_xref="GeneID:1252946" CDS complement(1505664..1506869) /gene="ydhC" /locus_tag="STM1428" /note="similar to E. coli putative transport protein (AAC74732.1); Blastp hit to AAC74732.1 (403 aa), 85% identity in aa 1 - 403" /codon_start=1 /transl_table=11 /product="Bcr/CflA family multidrug efflux transporter" /protein_id="NP_460391.1" /db_xref="GI:16764776" /db_xref="GeneID:1252946" /translation="MQPGKGFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPAAAVS ASLSLFLAGFAVAQLLWGPLSDRYGRKPILLLGLSIFALGSLGMLWVESAAALLTLRF VQAVGVCAATVIWQALVTDYYPSQKINRIFATIMPLVGLSPALAPLLGSWILTHFSWQ AIFATLFVITLLLMLPALRLKPSGKARTEGQDKLTFATLLRSKTYRGNVLIYAACSAS FFAWLTGSPFILSAMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGYQLLPWLLG LYALSVIATWGAGLLNNASLVEILIPFCVMAIANGAIYPIVVAQALRPFPQATGRAAA LQNTLQLGLCFLASLVVSWLISTPLLTTTSVMLSTVVLAALGYKMQSHADCAETGFPH ANVAHDKSH" regulatory complement(1506875..1506880) /regulatory_class="ribosome_binding_site" /gene="ydhC" /locus_tag="STM1428" /note="putative RBS for ydhC; RegulonDB:STMS1H001657" gene 1506972..1507914 /gene="ydhB" /locus_tag="STM1429" /db_xref="GeneID:1252947" regulatory 1506972..1506977 /regulatory_class="ribosome_binding_site" /gene="ydhB" /locus_tag="STM1429" /note="putative RBS for ydhB; RegulonDB:STMS1H001658" CDS 1506982..1507914 /gene="ydhB" /locus_tag="STM1429" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC74731.1); Blastp hit to AAC74731.1 (310 aa), 90% identity in aa 1 - 310" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_460392.1" /db_xref="GI:16764777" /db_xref="GeneID:1252947" /translation="MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWL AVPLFVRRHRDVELTPAGVWFLKEGRSVIKKMQITRQQCQQIANGWRGQLAIAVDNIV RPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATQAIPVGGRYAF RDMGTLSWSCVVASDHPLASMPGPLSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKR VVVPDWESSATCLSAGLCVGMVPTHFARQWIDSGKWVALTLENPFPDAACCVTWQQNE ASPALAWLLDYLGDSETLNREWLREPEEAPDSGD" gene complement(1507911..1509032) /gene="purR" /locus_tag="STM1430" /db_xref="GeneID:1252948" CDS complement(1507911..1508936) /gene="purR" /locus_tag="STM1430" /note="purine nucleotide synthesis repressor. (SW:PURR_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional repressor" /protein_id="NP_460393.1" /db_xref="GI:16764778" /db_xref="GeneID:1252948" /translation="MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELH YSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLE KQRAYLSMMAQKRVDGLLVMCSEYPEPLLSMLEEYRHIPMVVMDWGEAKADFTDTVID NAFAGGYMAGRYLVERGHRDIGVIPGPLERNTGAGRLAGFMKAMEEALINVPDNWIVQ GDFEPESGYHAMQQILSQSHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSVIGYDN VRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREESQSIEVHPRLVERRSVADG PFRDYRR" protein_bind complement(1508889..1508907) /gene="purR" /locus_tag="STM1430" /note="putative binding site for PurR, RegulonDB: STMS1H000348" /bound_moiety="PurR" regulatory complement(1508946..1508951) /regulatory_class="ribosome_binding_site" /gene="purR" /locus_tag="STM1430" /note="putative RBS for purR; RegulonDB:STMS1H001659" protein_bind complement(1508975..1508993) /gene="purR" /locus_tag="STM1430" /note="putative binding site for PurR, RegulonDB: STMS1H000352" /bound_moiety="PurR" regulatory complement(1509008..1509016) /regulatory_class="minus_10_signal" /gene="purR" /locus_tag="STM1430" /note="putative -10_signal for purR; RegulonDB:STMLTH004488" regulatory complement(1509024..1509032) /regulatory_class="minus_35_signal" /gene="purR" /locus_tag="STM1430" /note="putative -35_signal for purR; RegulonDB:STMLTH004488" gene complement(1509404..1509998) /gene="sodB" /locus_tag="STM1431" /db_xref="GeneID:1252949" CDS complement(1509404..1509985) /gene="sodB" /locus_tag="STM1431" /EC_number="1.15.1.1" /note="similar to E. coli superoxide dismutase, iron (AAC74728.1); Blastp hit to AAC74728.1 (193 aa), 94% identity in aa 1 - 193" /codon_start=1 /transl_table=11 /product="superoxide dismutase" /protein_id="NP_460394.1" /db_xref="GI:16764779" /db_xref="GeneID:1252949" /translation="MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIK GTAFEGKSLEEIVRTSEGGIFNNAAQVWNHTFYWNCLAPNAGGEPTGKLADAIAASFG SFAEFKAQFTDAAIKNFGSGWTWLVKSADGKLAIVSTSNAGTPLTTDATPLLTVDVWE HAYYIDYRNARPNYLEHFWALVNWEFVAKNLAA" regulatory complement(1509993..1509998) /regulatory_class="ribosome_binding_site" /gene="sodB" /locus_tag="STM1431" /note="putative RBS for sodB; RegulonDB:STMS1H001660" gene complement(1510112..1510966) /gene="ydhO" /locus_tag="STM1432" /db_xref="GeneID:1252950" CDS complement(1510112..1510966) /gene="ydhO" /locus_tag="STM1432" /note="similar to E. coli putative lipoprotein (AAC74727.1); Blastp hit to AAC74727.1 (271 aa), 72% identity in aa 1 - 271" /codon_start=1 /transl_table=11 /product="putative cell wall-associated hydrolase" /protein_id="NP_460395.1" /db_xref="GI:16764780" /db_xref="GeneID:1252950" /translation="MNRLPLTEDCSVARINKISITLCALLFTTLPFTPMAHASRQAKA TPAVSHVTKTADKKKSTTKKISKTSKKNVKKTSKTSRSSSASTPKRTTASTKSRHTTH RRNRTAPTSIAALDVTEKCTTRKGRKPHCVKGKGTLPVSIADAHRAKVQKATKTAMSK LMNQIGKPYHWGGASPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSE LKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRSGQEIKITSLNEEYWQRHYVGARR VMTPKTIR" gene 1511254..1511615 /gene="ydhD" /locus_tag="STM1433" /db_xref="GeneID:1252951" regulatory 1511254..1511259 /regulatory_class="ribosome_binding_site" /gene="ydhD" /locus_tag="STM1433" /note="putative RBS for ydhD; RegulonDB:STMS1H001661" CDS 1511268..1511615 /gene="ydhD" /locus_tag="STM1433" /note="similar to E. coli orf, hypothetical protein (AAC74726.1); Blastp hit to AAC74726.1 (115 aa), 97% identity in aa 1 - 115" /codon_start=1 /transl_table=11 /product="Grx4 family monothiol glutaredoxin" /protein_id="NP_460396.1" /db_xref="GI:16764781" /db_xref="GeneID:1252951" /translation="MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACG ERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE TAAKYKTQEPDAE" gene complement(1511693..1512340) /gene="rnt" /locus_tag="STM1434" /db_xref="GeneID:1252952" CDS complement(1511693..1512340) /gene="rnt" /locus_tag="STM1434" /EC_number="3.1.13.-" /note="degrades tRNA, has exonuclease and ssDNAse activity; similar to E. coli RNase T, degrades tRNA (AAC74724.1); Blastp hit to AAC74724.1 (215 aa), 90% identity in aa 1 - 209" /codon_start=1 /transl_table=11 /product="ribonuclease T" /protein_id="NP_460397.1" /db_xref="GI:16764782" /db_xref="GeneID:1252952" /translation="MSDNAQLSGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITL KMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNGIDPSNPLRGAVSEYEALHAIFKM VRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLKRNPFHPFVTFDTAALSGLALG QTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVNRWKRLGGWPLPLPTDK" gene complement(1512441..1512861) /gene="gloA" /locus_tag="STM1435" /db_xref="GeneID:1252953" CDS complement(1512441..1512848) /gene="gloA" /locus_tag="STM1435" /EC_number="4.4.1.5" /note="lactoylglutathione lyase. (SW:LGUL_SALTY)" /codon_start=1 /transl_table=11 /product="lactoylglutathione lyase" /protein_id="NP_460398.1" /db_xref="GI:16764783" /db_xref="GeneID:1252953" /translation="MRLLHTMLRVGDLQRSIAFYTNVLGMKLLRTSENPEYKYSLAFV GYGPETEEAVIELTYNWGVESYDMGNAYGHIALSVDNAAEACERIRQNGGNVTREAGP VKGGSTIIAFVEDPDGYKIELIEAKDAGRGLGN" regulatory complement(1512856..1512861) /regulatory_class="ribosome_binding_site" /gene="gloA" /locus_tag="STM1435" /note="putative RBS for gloA; RegulonDB:STMS1H001662" gene complement(1512917..1514025) /gene="nemA" /locus_tag="STM1436" /db_xref="GeneID:1252954" CDS complement(1512917..1514014) /gene="nemA" /locus_tag="STM1436" /EC_number="1.-.-.-" /note="similar to E. coli N-ethylmaleimide reductase (AAC74722.1); Blastp hit to AAC74722.1 (365 aa), 92% identity in aa 1 - 365" /codon_start=1 /transl_table=11 /product="N-ethylmaleimide reductase" /protein_id="NP_460399.1" /db_xref="GI:16764784" /db_xref="GeneID:1252954" /translation="MSSAKLFTPLKVGAITATNRVFMAPLTRLRSIEPGDIPTPLMAE YYRQRASAGLIISEATQISAQAKGYAGAPGLHSDEQIAAWKKITQGVHAQGGHMAVQL WHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALDTHEIPGI VNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNHRTDRYGGGVENRARLVLEV VDAGIKEWGADRIGIRLSPVGTFQNVDNGPNEEADALYLIEALGKRGIAYLHMSEPDW AGGEPYSDAFREKVRARFHGPIIGAGAYTPEKAEDLIEKGLIDAVAFGRDYIANPDLV ARLQRKAELNPQRPESFYGGGAEGYTDYPTL" regulatory complement(1514020..1514025) /regulatory_class="ribosome_binding_site" /gene="nemA" /locus_tag="STM1436" /note="putative RBS for nemA; RegulonDB:STMS1H001663" gene complement(1514073..1514672) /gene="ydhM" /locus_tag="STM1437" /db_xref="GeneID:1252955" CDS complement(1514073..1514672) /gene="ydhM" /locus_tag="STM1437" /note="similar to E. coli orf, hypothetical protein (AAC74721.1); Blastp hit to AAC74721.1 (199 aa), 83% identity in aa 1 - 197" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="NP_460400.1" /db_xref="GI:16764785" /db_xref="GeneID:1252955" /translation="MNKQTEHDTREHLLATGEQLCMQRGFTGMGLSELLKTAQVPKGS FYHYFRSKEAFGVAMLERHYACYHQRLTAHFTSGPGNHRDRLLAWYQETLKQFCQQGA ISGCLTVKLSAEVCDLSEDMRSTMDKGAQEIMALLARALEDGRNSHCLHFTGQPLPQA QVLYALWLGANLQAKISRSAAPLENALAHVKTIIATPEQ" gene 1514764..1515014 /gene="ydhL" /locus_tag="STM1438" /db_xref="GeneID:1252956" regulatory 1514764..1514769 /regulatory_class="ribosome_binding_site" /gene="ydhL" /locus_tag="STM1438" /note="putative RBS for ydhL; RegulonDB:STMS1H001664" CDS 1514775..1515014 /gene="ydhL" /locus_tag="STM1438" /note="similar to E. coli orf, hypothetical protein (AAC74720.1); Blastp hit to AAC74720.1 (125 aa), 83% identity in aa 47 - 125" /codon_start=1 /transl_table=11 /product="DUF1289 domain-containing protein" /protein_id="NP_460401.1" /db_xref="GI:16764786" /db_xref="GeneID:1252956" /translation="MAEQLEFFPVASPCRGICQSDERGFCRGCMRSRDERFNWQKMSD VEKQNVLRLCRQRFLRKIRANKPLPSEDPQQPSLF" gene 1515053..1515961 /gene="ydhF" /locus_tag="STM1439" /db_xref="GeneID:1252957" regulatory 1515053..1515058 /regulatory_class="ribosome_binding_site" /gene="ydhF" /locus_tag="STM1439" /note="putative RBS for ydhF; RegulonDB:STMS1H001665" CDS 1515065..1515961 /gene="ydhF" /locus_tag="STM1439" /note="similar to E. coli orf, hypothetical protein (AAC74719.1); Blastp hit to AAC74719.1 (298 aa), 89% identity in aa 1 - 298" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_460402.1" /db_xref="GI:16764787" /db_xref="GeneID:1252957" /translation="MVQRVTIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDL GVTTVDHADIYGGYQCEAAFGEALTLAPHLREKLQIVTKCGIATTARAENKLGHYITD RRHIILSAEQSLKNLATDYLDMLLIHRPDPLMDADDVAEAFQHLHQSGKVRHFGVSNF TPAQFTLLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRIRPMAWSCLGGGRLF NDEAYQPLRQELSVIAQELNASSIEQVVYAWILRLPSQPLPIIGSGKIERVRAALEAE TLSLTRQQWFRIRKAALGYDVP" gene 1516033..1516562 /gene="sodC" /locus_tag="STM1440" /db_xref="GeneID:1252958" regulatory 1516033..1516038 /regulatory_class="ribosome_binding_site" /gene="sodC" /locus_tag="STM1440" /note="putative RBS for sodC; RegulonDB:STMS1H001666" CDS 1516041..1516562 /gene="sodC" /locus_tag="STM1440" /EC_number="1.15.1.1" /note="similar to E. coli superoxide dismutase precursor (Cu-Zn) (AAC74718.1); Blastp hit to AAC74718.1 (173 aa), 82% identity in aa 1 - 173" /codon_start=1 /transl_table=11 /product="superoxide dismutase" /protein_id="NP_460403.1" /db_xref="GI:16764788" /db_xref="GeneID:1252958" /translation="MKRLSLAMVTLLACAGAQAASEKVEMNLVTAQGVGQSIGTVVID ETEGGLKFTPHLKALPPGEHGFHIHANGSCQPAIKDGKAVAAEAAGGHLDPQNTGKHE GPEGQGHLGDLPVLVVNNDGIASEPVTAPRLKSLDEVKDKALMIHVGGDNMSDQPKPL GGGGMRYACGVIK" gene complement(1516538..1518583) /locus_tag="STM1441" /db_xref="GeneID:1252959" CDS complement(1516538..1518577) /locus_tag="STM1441" /note="similar to E. coli orf, hypothetical protein (AAC74717.1); Blastp hit to AAC74717.1 (670 aa), 84% identity in aa 1 - 669" /codon_start=1 /transl_table=11 /product="fusaric acid resistance protein" /protein_id="NP_460404.1" /db_xref="GI:16764789" /db_xref="GeneID:1252959" /translation="MKLSLPALRNTPWFKATSGQWRYALRNTIAMCLALTFAYYLNLD EPYWAMTSAAVVSFPTVGGVISKSLGRIAGSLLGATAALIIAGHTLNEPWLFLFSMAA WIGFCTWACAHFTNNAAYAFQLSGYTAAIIAFPMVNIVEITQLWDIAQARVCEVIVGI LCGGMMMMILPSTSDGTALLTAFKNMHARLLEHASLLWQPETTDAIRSAHEGVIGQIL TMNLLRIQAFWSHYRFRRQNALLNALLHQQLRLTSVISSLRRMLLNWPTPPENSREVI EQLLAELAKPRADSYTVAQIIAPLRPQDEQDYRHLAFWQRLRYFCQLYLRSSRQLYLI ESGAPVDQIHIRRTPGLARHTDNAEAIWSGVRTFCTLTVIGAWSIGAQWESGPGALTL AAISCVLYSIVATPFKSLSLLMRTLVLLSLFSFVVKFGLMVQITDLWQFLLFLFPLFV TMQLLKLQMPKLAGLWGQLIVFMGSFIAVTNPPVYDFADFLNDNTAKIVGVAISWLAF AILRPGSDAVKSRRHIRALRRDFVDQLSRHPSHNESEFESLTYHHVSQLSNSQDALAR RWLLRWGVVLLNCSHVVWQLRAWESRSDPLSRVRDICISLLRDVMSERGVQQRPLAVT LQELQRICDTLAHHHQPAAHELAAIIWRLHCSLSQLEQAPAQGTLAPGYLMTPQA" gene complement(1518577..1519473) /gene="ydhJ" /locus_tag="STM1442" /db_xref="GeneID:1252960" CDS complement(1518577..1519473) /gene="ydhJ" /locus_tag="STM1442" /note="similar to E. coli putative membrane protein (AAC74716.1); Blastp hit to AAC74716.1 (299 aa), 83% identity in aa 9 - 299" /codon_start=1 /transl_table=11 /product="putative multidrug resistance efflux pump" /protein_id="NP_460405.1" /db_xref="GI:16764790" /db_xref="GeneID:1252960" /translation="MSGPRFTDRVVNMSLKTIKYFSTLIVAVVAVLAAWWLWNYYMQS PWTRDGKIRAEQVSVTPQVSGSITQLNIKDNQFVNAGDVLFVIDKTPFHIAELNAQAQ LAKAQSDLAKANNEADRRRHLSRNYISAEDLDSANLNVKAMQANVDVALATLKQAQWQ LSQTEVKAPVSGWVTNLSTRTGDYASTGKPLFALVDSHSFYVMGYFEETKLRHIREGE PALITLYSGNVKLQGHVGSIGRAIYDQSVESDSGLVPDIKPNVPWVRLAQRVPVRIEF DALPQDITLVSGTTCSVAIGQR" regulatory complement(1518578..1518583) /regulatory_class="ribosome_binding_site" /gene="ydhJ" /locus_tag="STM1442" /note="putative RBS for STM1441; RegulonDB:STMS1H001667" gene complement(1519440..1519690) /gene="ydhI" /locus_tag="STM1443" /db_xref="GeneID:1252961" CDS complement(1519440..1519676) /gene="ydhI" /locus_tag="STM1443" /note="similar to E. coli orf, hypothetical protein (AAC74715.1); Blastp hit to AAC74715.1 (78 aa), 76% identity in aa 1 - 78" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460406.1" /db_xref="GI:16764791" /db_xref="GeneID:1252961" /translation="MKCILNATGLPLQDLMLGASVYFPPFFKAFALGFVIWLFIHRLL RDRIYSDEIWHPLLMDLSLFTLCVCLGLVLLIAW" regulatory complement(1519685..1519690) /regulatory_class="ribosome_binding_site" /gene="ydhI" /locus_tag="STM1443" /note="putative RBS for ydhI; RegulonDB:STMS1H001668" gene 1519865..1520311 /gene="slyA" /locus_tag="STM1444" /db_xref="GeneID:1252962" regulatory 1519865..1519870 /regulatory_class="ribosome_binding_site" /gene="slyA" /locus_tag="STM1444" /note="putative RBS for slyA; RegulonDB:STMS1H001669" CDS 1519871..1520311 /gene="slyA" /locus_tag="STM1444" /note="transcriptional regulator SLYA (salmolysin) (cytolysin SLYA). (SW:SLYA_SALTY)" /codon_start=1 /transl_table=11 /product="MarR family transcriptional regulator for hemolysin" /protein_id="NP_460407.3" /db_xref="GI:1109557624" /db_xref="GeneID:1252962" /translation="MKLESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQ LPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI AEMEEVIHKTRGEILAGISSEEIELLIKLIAKLEHNIMELHSHD" gene complement(1520359..1520840) /gene="slyB" /locus_tag="STM1445" /db_xref="GeneID:1252963" CDS complement(1520359..1520826) /gene="slyB" /locus_tag="STM1445" /note="outer membrane lipoprotein SLYB precursor. (SW:SLYB_SALTY)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460408.1" /db_xref="GI:16764793" /db_xref="GeneID:1252963" /translation="MIKRVLAVSLMGLSLAGCVNNDSLSGDVYTASEAKQVQNVTYGT IVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTIGGGTGRSLATAAGAVAGGVAGQGV QSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSAGQRVVLASNGSQVTVSPR" regulatory complement(1520835..1520840) /regulatory_class="ribosome_binding_site" /gene="slyB" /locus_tag="STM1445" /note="putative RBS for slyB; RegulonDB:STMS1H001670" gene 1521087..1522219 /gene="ydhH" /locus_tag="STM1446" /db_xref="GeneID:1252964" regulatory 1521087..1521092 /regulatory_class="ribosome_binding_site" /gene="ydhH" /locus_tag="STM1446" /note="putative RBS for ydhH; RegulonDB:STMS1H001671" CDS 1521098..1522219 /gene="ydhH" /locus_tag="STM1446" /note="similar to E. coli orf, hypothetical protein (AAC74712.1); Blastp hit to AAC74712.1 (369 aa), 84% identity in aa 1 - 369" /codon_start=1 /transl_table=11 /product="anhydro-N-acetylmuramic acid kinase" /protein_id="NP_460409.1" /db_xref="GI:16764794" /db_xref="GeneID:1252964" /translation="MKSGRFIGVMSGTSLDGVDVVLAAIDETMVAQQASLTWPIPVHL KKGILDICQGQPLTLSQLGQLDTQLGRLFAQAVNALLAQQRLQPRDIVAIGCHGQTVW HEPTGEAPHTLQIGDNNHIVAHTGITVVGDFRRRDIALGGQGAPLVPAFHHALLGHPT EKRMVLNIGGIANLSLLFPGQAVRGYDTGPGNMLMDAWIWRQCAQPYDKDAAWAKEGQ VILPLLQKMLRDPYFAASAPKSTGREYFNYGWLERHLAAFPGADARDVQATLAELTAV SIAQQVLLNGGCERLMVCGGGGRNPLVMARLAALLPGIEVSTTDKAGISGDDMEALAF AWLAWRTLAGLPGNLPSVTGATEASVLGAIYPANPITQS" gene 1522289..1522636 /gene="ydhA" /locus_tag="STM1447" /db_xref="GeneID:1252965" regulatory 1522289..1522294 /regulatory_class="ribosome_binding_site" /gene="ydhA" /locus_tag="STM1447" /note="putative RBS for ydhA; RegulonDB:STMS1H001672" CDS 1522307..1522636 /gene="ydhA" /locus_tag="STM1447" /note="similar to E. coli orf, hypothetical protein (AAC74711.1); Blastp hit to AAC74711.1 (82 aa), 90% identity in aa 1 - 82" /codon_start=1 /transl_table=11 /product="lysozyme inhibitor" /protein_id="NP_460410.1" /db_xref="GI:16764795" /db_xref="GeneID:1252965" /translation="MPMKKIAIMCLPVLLTGCSVYQQFVERMQTDTLEYQCDEKPLTV KVNNPREEVSFVYDNKLLTLKQGISASGARYTDGIYVFWSQGESATVYKRDRIVLNNC QLQNPKR" gene 1522695..1523351 /gene="pdxH" /locus_tag="STM1448" /db_xref="GeneID:1252966" CDS 1522695..1523351 /gene="pdxH" /locus_tag="STM1448" /EC_number="1.4.3.5" /note="similar to E. coli pyridoxinephosphate oxidase (AAC74710.1); Blastp hit to AAC74710.1 (218 aa), 91% identity in aa 1 - 218" /codon_start=1 /transl_table=11 /product="pyridoxamine 5'-phosphate oxidase" /protein_id="NP_460411.1" /db_xref="GI:16764796" /db_xref="GeneID:1252966" /translation="MSDNDQLQQIAHLRREYTKGGLRRRDLPAEPLTLFERWLGQACD ARLADPTAMVVATVDDKGQPYQRIVLLKHYDEKGLVFYTNLGSRKAHQIEHNPRISLL FPWHMLERQVMVTGKAERLSTLEVVRYFHSRPRDSQIGAWVSKQSSRISARGILESKF LELKQKFQQGEVPLPSFWGGFRVSIEQMEFWQGGEHRLHDRFLYQRDDGAWKIDRLAP " gene 1523466..1524752 /gene="tyrS" /locus_tag="STM1449" /db_xref="GeneID:1252967" regulatory 1523466..1523471 /regulatory_class="ribosome_binding_site" /gene="tyrS" /locus_tag="STM1449" /note="putative RBS for tyrS; RegulonDB:STMS1H001673" CDS 1523478..1524752 /gene="tyrS" /locus_tag="STM1449" /EC_number="6.1.1.1" /note="similar to E. coli tyrosine tRNA synthetase (AAC74709.1); Blastp hit to AAC74709.1 (424 aa), 96% identity in aa 1 - 424" /codon_start=1 /transl_table=11 /product="tyrosine--tRNA ligase" /protein_id="NP_460412.1" /db_xref="GI:16764797" /db_xref="GeneID:1252967" /translation="MASSNLIKQLQERGLVAQVTDEDALAERLAQGPIALYCGFDPTA DSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVA KIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQR LNRDDQGISFTEFSYNLLQGYDFACLNKLHGVALQIGGSDQWGNITSGIDLTRRLHQN QVFGLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFT FMDIEEINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLVAAKRITECLFSGSLSA LSEADFEQLAQDGVPMVEMEKGADLMQALVDAELQPSRGQARKTIASNAVTINGEKQS DPEYIFNDEDRLFGRYTLLRRGKKNYCLICWK" gene 1524801..1525672 /gene="pdxY" /locus_tag="STM1450" /db_xref="GeneID:1252968" regulatory 1524801..1524806 /regulatory_class="ribosome_binding_site" /gene="pdxY" /locus_tag="STM1450" /note="putative RBS for pdxY; RegulonDB:STMS1H001674" CDS 1524812..1525672 /gene="pdxY" /locus_tag="STM1450" /EC_number="2.7.1.35" /note="similar to E. coli pyridoxal kinase 2 / pyridoxine kinase (AAC74708.1); Blastp hit to AAC74708.1 (287 aa), 90% identity in aa 2 - 287" /codon_start=1 /transl_table=11 /product="pyridoxal kinase" /protein_id="NP_460413.1" /db_xref="GI:16764798" /db_xref="GeneID:1252968" /translation="MKNILAIQSHVVFGHAGNSAAEFPMRRLGANVWPLNTVQFSNHT QYGKWTGCVMPPSHLTEIVQGIADIGQLAHCDAVLSGYLGSAEQGEHILGIVRQVKAA NPQAKYFCDPVMGHPEKGCIVAPGVAEFHVRYALPASDIIAPNLIELEILSKHSVNNV DDAVQAARELIAQGPEIVLVKHLARAGYSSERFEMLLVTAQEAWHISRPLVDFGSRQP VGVGDVTSGLLLVKLLQGATLQQALEHVTAAVYEIMIATKTMQEYELQVVAAQDRIAN PEHYFSATRL" gene complement(1525731..1526348) /gene="gst" /locus_tag="STM1451" /db_xref="GeneID:1252969" CDS complement(1525731..1526336) /gene="gst" /locus_tag="STM1451" /EC_number="2.5.1.18" /note="similar to E. coli glutathionine S-transferase (AAC74707.1); Blastp hit to AAC74707.1 (201 aa), 84% identity in aa 1 - 200" /codon_start=1 /transl_table=11 /product="glutathione transferase GstA" /protein_id="NP_460414.1" /db_xref="GI:16764799" /db_xref="GeneID:1252969" /translation="MKLFYKPGACSLASHITLREIGKDFTLDGVDLAKKRLENGDDYL AVNPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVSSLARYHTLEWLNYIA TELHKGFTPLFRPDTPETLKPAVRAGLEKKLQYVDESLSDDQWICGQRFTIADAYLFT VLRWAYGVKLNMDGLTHIESYMQRVAKRPTVAAALKAEGLN" regulatory complement(1526343..1526348) /regulatory_class="ribosome_binding_site" /gene="gst" /locus_tag="STM1451" /note="putative RBS for gst; RegulonDB:STMS1H001675" gene complement(1526441..1527955) /gene="ydgR" /locus_tag="STM1452" /db_xref="GeneID:1252970" CDS complement(1526441..1527946) /gene="ydgR" /locus_tag="STM1452" /note="similar to E. coli putative transport protein (AAC74706.1); Blastp hit to AAC74706.1 (500 aa), 90% identity in aa 1 - 498" /codon_start=1 /transl_table=11 /product="dipeptide/tripeptide permease A" /protein_id="NP_460415.1" /db_xref="GI:16764800" /db_xref="GeneID:1252970" /translation="MSTANKKPTESVSLNAFKQPKAFYLIFSIELWERFGYYGLQGIM AVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKILGTKRVIMLGAVVLAIGY ALVAWSGHDAGIVYMGMAAIAVGNGLFKANPSSLLSTCYAKDDPRLDGAFTMYYMSVN IGSFFSMLATPWLAARYGWSTAFALSVVGMLITVVNFAFCQRWVKSYGSKPDFEPINF RNLLLTIVGIVVLIAVATWLLHNQDIARMVLGVIALGIVIIFGKEAFSMHGAARRKMI VAFILMLQAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAFEPEQYQALNPFWIIIGSP ILAAIYNRMGDTLPMPMKFAIGMVLCSGAFLILPLGAKFANDAGIVSVNWLIASYGLQ SIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGANIIGGYVANLMAVPSDVTDP LMSLEVYGRVFMQIGIATAVIAVLMLLTAPKLNRMTQDDDTAEKGSKAATV" regulatory complement(1527950..1527955) /regulatory_class="ribosome_binding_site" /gene="ydgR" /locus_tag="STM1452" /note="putative RBS for ydgR; RegulonDB:STMS1H001676" gene complement(1528548..1529196) /gene="nth" /locus_tag="STM1453" /db_xref="GeneID:1252971" CDS complement(1528548..1529183) /gene="nth" /locus_tag="STM1453" /EC_number="4.2.99.18" /note="similar to E. coli endonuclease III; specific for apurinic and/or apyrimidinic sites (AAC74705.1); Blastp hit to AAC74705.1 (211 aa), 95% identity in aa 1 - 211" /codon_start=1 /transl_table=11 /product="DNA glycosylase/apyrimidinic (AP) lyase" /protein_id="NP_460416.1" /db_xref="GI:16764801" /db_xref="GeneID:1252971" /translation="MNKAKRLEILTRLRDNNPHPTTELNFTSPFELLIAVLLSAQATD VSVNKATAKLYPVANTPAAMLELGVEGVKSYIKTIGLFNSKAENVIKTCRILLDKHNG EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVE EKLLKVVPNEFKVDCHHWLILHGRYTCIARKPRCGSCLIEDLCEYKEKVDI" gene complement(1529183..1529888) /gene="ydgQ" /locus_tag="STM1454" /db_xref="GeneID:1252972" CDS complement(1529183..1529875) /gene="ydgQ" /locus_tag="STM1454" /note="similar to E. coli orf, hypothetical protein (AAC74704.1); Blastp hit to AAC74704.1 (231 aa), 91% identity in aa 1 - 231" /codon_start=1 /transl_table=11 /product="electron transport complex subunit RsxE" /protein_id="NP_460417.1" /db_xref="GI:16764802" /db_xref="GeneID:1252972" /translation="MSEIKDIVVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLA TTLVLTLTNLTVSALRRWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFI PLIVTNCIVVGRAEAFAAKKGPWLSALDGFSIGMGATGAMFVLGSLREILGNGTLFDG ADSLLGGWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAVKYLIDEKMKKRRAETA PSAVPAGETGKV" regulatory complement(1529191..1529196) /regulatory_class="ribosome_binding_site" /gene="nth" /locus_tag="STM1453" /note="putative RBS for nth; RegulonDB:STMS1H001677" gene complement(1529878..1530509) /gene="ydgP" /locus_tag="STM1455" /db_xref="GeneID:1252973" CDS complement(1529878..1530498) /gene="ydgP" /locus_tag="STM1455" /note="similar to E. coli orf, hypothetical protein (AAC74703.1); Blastp hit to AAC74703.1 (206 aa), 84% identity in aa 1 - 206" /codon_start=1 /transl_table=11 /product="electron transport complex subunit RsxG" /protein_id="NP_460418.1" /db_xref="GI:16764803" /db_xref="GeneID:1252973" /translation="MLKTIRKHGITLALFAAGSTGLTAVINQMTKSTIHEQALQQQHA LFDQVLPPDRYNNNLQESCYLVDAPALGKGTHRVFIARKDDKPVAAIIEATAPDGYSG AIQLIVGADFNGTVLGTRVTEHHETPGLGDKIERRLSDWITHFSGKTISGENDTHWAV KKDGGDFDQFTGATITPRAVVNAVKRAGLYAESLPAQLPHLTACGE" regulatory complement(1529883..1529888) /regulatory_class="ribosome_binding_site" /gene="ydgP" /locus_tag="STM1455" /note="putative RBS for ydgQ; RegulonDB:STMS1H001678" gene complement(1530502..1531569) /gene="ydgO" /locus_tag="STM1456" /db_xref="GeneID:1252974" CDS complement(1530502..1531560) /gene="ydgO" /locus_tag="STM1456" /note="similar to E. coli orf, hypothetical protein (AAC74702.1); Blastp hit to AAC74702.1 (352 aa), 87% identity in aa 1 - 352" /codon_start=1 /transl_table=11 /product="electron transport complex subunit RsxD" /protein_id="NP_460419.1" /db_xref="GI:16764804" /db_xref="GeneID:1252974" /translation="MVFRIASSPYTHNQRQTSRIMLLVLIAALPGIAAQTWFFGWGTL FQIVLAAITALVAEAIVLRLRKQSVASHLQDYSALLTGLLLAVSIPPLAPWWMVVLGT GFAIIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPYEIAATTPDMLDTLR MIFTGHTASGGDMTLLRIGIDGISQATPLDTFKTSLRAGHSVEQIMQYPIYSGALAGV GWQWVNLAWLVGGVFLLWQKAIRWHIPVSFLLTLALCAALGWLFSPATLASPQLHLLS GATMLGAFFILTDPVTASTTNRGRLIFGALAGVLVWLIRSFGGYPDGVAFAVLLANIT VPLIDYYTRPRVYGHRKG" regulatory complement(1530504..1530509) /regulatory_class="ribosome_binding_site" /gene="ydgP" /locus_tag="STM1455" /note="putative RBS for ydgP; RegulonDB:STMS1H001679" gene complement(1531561..1533778) /locus_tag="STM1457" /db_xref="GeneID:1252975" CDS complement(1531561..1533768) /locus_tag="STM1457" /note="similar to E. coli putative membrane protein (AAC74701.1); Blastp hit to AAC74701.1 (740 aa), 87% identity in aa 1 - 740" /codon_start=1 /transl_table=11 /product="electron transport complex subunit RsxC" /protein_id="NP_460420.1" /db_xref="GI:16764805" /db_xref="GeneID:1252975" /translation="MLKLFSAFRKDKIWDFDGGIHPPEMKTQSNGTPLRQVPLAPRFV IPLKQHIGAEGELCVSVGDRVLRGQALTRGRGRMLPVHAPTSGTVIAIAPHSTAHPSA LAELSVIIDADGEDRWIEREGWSDYRAHSREALIERIHQYGVAGLGGAGFPTGVKLQG GGDKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKP QAISMLRAVLADAHDISLRVIPTKYPSGGAKQLTRILTGKQVPHGGRSSDIGVLMQNV GTAYAVKRAVIDGEPITERVVTLTGEAVSRPGNVWARLGTPVRHLLNDAGFCPSADQM VIMGGPLMGFTLPWLDVPVVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLL PQQLYWFSKGQQHDKATAHHIADCIECGACAWVCPSNIPLVQYFRQEKAEINAIRLEE KRAAEAKARFEARQARLEREKAARLARHKSAAVQPAAKDQDAIAAALARVKEKQAQAT QPVVIQAGSQPDNSAVIAAREARKAQARAKQAAHPMADSAIPGDDPSKAAVEAAIARA KARKQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEQQAGSEPVEAVDPRKAAVEAA IARAKARKQEQQTGSEPAEAVDPRKAAVEAAIARAKARKQEQQTGSEPAEPIDPRKAA VEAAIARAKARKQEQQAGSEPAEPADPRKAAVAAAIARVQAKKAAQQQVVNED" regulatory complement(1531564..1531569) /regulatory_class="ribosome_binding_site" /gene="ydgO" /locus_tag="STM1456" /note="putative RBS for ydgO; RegulonDB:STMS1H001680" gene complement(1533761..1534358) /gene="ydgM" /locus_tag="STM1458" /db_xref="GeneID:1252976" CDS complement(1533761..1534339) /gene="ydgM" /locus_tag="STM1458" /note="similar to E. coli orf, hypothetical protein (AAC74700.1); Blastp hit to AAC74700.1 (192 aa), 89% identity in aa 1 - 192" /codon_start=1 /transl_table=11 /product="electron transport complex subunit RsxB" /protein_id="NP_460421.1" /db_xref="GI:16764806" /db_xref="GeneID:1252976" /translation="MNTIWIAVGALTLLGLVFGAILGYASRRFAVEDDPVVEKIDAIL PQSQCGQCGYPGCRPYAEAVGLQGEKINRCAPGGEAVMLKIAELLNVEPQPCDGEEQQ AAPVRMLAVIDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTH CIELRPVNETPDSWKWDLNTIPVRIIPVEQHA" regulatory complement(1533773..1533778) /regulatory_class="ribosome_binding_site" /gene="ydgM" /locus_tag="STM1458" /note="putative RBS for STM1457; RegulonDB:STMS1H001681" gene complement(1534339..1534931) /locus_tag="STM1459" /db_xref="GeneID:1252977" CDS complement(1534339..1534920) /locus_tag="STM1459" /note="similar to E. coli orf, hypothetical protein (AAC74699.1); Blastp hit to AAC74699.1 (193 aa), 98% identity in aa 1 - 193" /codon_start=1 /transl_table=11 /product="electron transport complex subunit RsxA" /protein_id="NP_460422.1" /db_xref="GI:16764807" /db_xref="GeneID:1252977" /translation="MTDYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLA TTFVMTLASICAWLIDTWILIPLDLIYLRTLAFILVIAVVVQFTEMVVRKTSPALYRL LGIFLPLITTNCAVLGVALLNINLGHHFLQSALYGFSAAVGFSLVMVLFAAIRERLAV ADVPAPFRGNAIALITAGLMSLAFMGFSGLVKL" regulatory complement(1534353..1534358) /regulatory_class="ribosome_binding_site" /locus_tag="STM1459" /note="putative RBS for ydgM; RegulonDB:STMS1H001682" regulatory complement(1534926..1534931) /regulatory_class="ribosome_binding_site" /locus_tag="STM1459" /note="putative RBS for STM1459; RegulonDB:STMS1H001683" gene complement(1534997..1535448) /gene="ydgK" /locus_tag="STM1460" /db_xref="GeneID:1252978" CDS complement(1534997..1535437) /gene="ydgK" /locus_tag="STM1460" /note="similar to E. coli orf, hypothetical protein (AAC74698.1); Blastp hit to AAC74698.1 (154 aa), 82% identity in aa 9 - 154" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460423.1" /db_xref="GI:16764808" /db_xref="GeneID:1252978" /translation="MTTTPPQRIGGWLLGPLAWLLVALLSASLALLLYVMALATPQTF KTLSGQETGNLLLWGISFITAIAMWYYTLWLTIAFFKRRRCVPKHYIIWLLVSVLLAV KAFAFSPVSDAFAVRQLLFPLLATALIVPYLKRSARVKTTFVNP" regulatory complement(1535443..1535448) /regulatory_class="ribosome_binding_site" /gene="ydgK" /locus_tag="STM1460" /note="putative RBS for ydgK; RegulonDB:STMS1H001684" gene complement(1535526..1535756) /gene="ydgT" /locus_tag="STM1461" /db_xref="GeneID:1252979" CDS complement(1535526..1535741) /gene="ydgT" /locus_tag="STM1461" /note="similar to E. coli orf, hypothetical protein (AAC74697.1); Blastp hit to AAC74697.1 (71 aa), 88% identity in aa 1 - 71" /codon_start=1 /transl_table=11 /product="oriC-binding nucleoid-associated protein" /protein_id="NP_460424.3" /db_xref="GI:308065940" /db_xref="GeneID:1252979" /translation="MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAAD HRRAELVSGGRLFDVGQVPQSVWRYVQ" regulatory complement(1535751..1535756) /regulatory_class="ribosome_binding_site" /gene="ydgT" /locus_tag="STM1461" /note="putative RBS for ydgT; RegulonDB:STMS1H001685" gene 1536297..1537412 /gene="ydgJ" /locus_tag="STM1462" /db_xref="GeneID:1252980" CDS 1536297..1537412 /gene="ydgJ" /locus_tag="STM1462" /note="similar to E. coli orf, hypothetical protein (AAC74696.1); Blastp hit to AAC74696.1 (359 aa), 91% identity in aa 11 - 359" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_460425.3" /db_xref="GI:1109557625" /db_xref="GeneID:1252980" /translation="MMVRTLLRLIARWCGIAISKTGGSEMNDKIRVGLIGYGYASKTF HAPLIMGTPGLELAAVSSSDETKVKADWPAVSVVSEPRHLFNDPHIDLIVIPTPNDTH FPLAKAALEAGKHVVVDKPFTVTLSQARELDALARSTGRVLSVFHNRRWDSDFLTLKA LLADGVLGEVSLFESHFDRFRPQVRDRWREQGGPGSGIWYDLAPHLLDQAIQLFGLPV SMTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIVHGSRGSYVKYG LDPQEERLKNGERLPQEDWGYDMRDGVLTLVEGETRKEENWLTLPGNYPAYYAAIRDA LNGNGENPVPASQAIQIMELIELGMESAKHRATLCLA" gene complement(1537487..1538488) /gene="add" /locus_tag="STM1463" /db_xref="GeneID:1252981" CDS complement(1537487..1538488) /gene="add" /locus_tag="STM1463" /EC_number="3.5.4.4" /note="similar to E. coli adenosine deaminase (AAC74695.1); Blastp hit to AAC74695.1 (333 aa), 90% identity in aa 1 - 331" /codon_start=1 /transl_table=11 /product="adenosine deaminase" /protein_id="NP_460426.1" /db_xref="GI:16764811" /db_xref="GeneID:1252981" /translation="MIDITLPLTDIHRHLDGNIRAQTILDLGRQFNIALPAQTLETLI PHVQVTSTEPDLVSFLTKLDWGVKVLASLDACRRVAFENIEDAARNGLHYVELRFSPG YMAMAHQLPIAGVVEAVIDGVRDGCNTFGVEARLIGIMSRTFGEAACLQELDALLAHR ENITALDLAGDELGFPGSLFLSHFNRARDAGWHITVHAGEAAGPESIWQAIRELGAER IGHGVKAVEDRALMDFLAQQRIGIESCLTSNIQTSTVASLADHPLKTFLEHGVLASLN TDDPAVQGVDIIHEYHVAAPAAGLSREQIRQAQINGLEIAFLSDSEKRALREKVAEA" gene complement(1538711..1538844) /gene="malY" /locus_tag="STM1464" /note="pseudogene; in-frame stop following codon 16" /pseudo /db_xref="GeneID:1252982" gene complement(1538854..1539073) /gene="malX" /locus_tag="STM1465" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1252983" gene complement(1539192..1540713) /gene="ydgA" /locus_tag="STM1466" /db_xref="GeneID:1252984" CDS complement(1539192..1540700) /gene="ydgA" /locus_tag="STM1466" /note="similar to E. coli orf, hypothetical protein (AAC74686.1); Blastp hit to AAC74686.1 (502 aa), 79% identity in aa 1 - 502" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460427.1" /db_xref="GI:16764812" /db_xref="GeneID:1252984" /translation="MKKTLVAAGVVIALGIVWTGGAWYTGKKLENHLAEMVTQANEQL KRTAPEAGVELSYQNYQRGVFSSHLQLVVKPVAGADNTWLKPGQSIVLDESVSHGPFP LAQLKTLNLIPSMASVKTTLVNNDAAKPLFDIAKGDAPFVINTRIGYGGDTRSDISLK PLNYENAGEKVAFSGGEFQLNADKDGNVVSLSGEAQSGLVDAVNEYNQKVQLTFNNLK TDGTSKLASFGERVGDQKLTLDKLSIAIEGKEMAVLEGMEITGKSDLVNDGKTINSQL DYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYHAQTQALLNQPDVAQNPELY QQKVTEAFFSALPVLLKGDPVLTLAPLSWKNAKGETTLNLSLFLKDPATTTAQPQTLA QEVDRSVKSLDAKLAIPMDMAVEFMTQIAKLEGYQQDDAEKLAKQQVQGLSAMGQMFR LTTLKDNTIASSLQYANGQITLNGQKMPLEDFVGLFGMPALSVPDVPALPQQ" regulatory complement(1540708..1540713) /regulatory_class="ribosome_binding_site" /gene="ydgA" /locus_tag="STM1466" /note="putative RBS for ydgA; RegulonDB:STMS1H001688" gene complement(1540803..1541990) /gene="manA" /locus_tag="STM1467" /db_xref="GeneID:1252985" CDS complement(1540803..1541978) /gene="manA" /locus_tag="STM1467" /EC_number="5.3.1.8" /note="mannose-6-phosphate isomerase. (SW:MANA_SALTY)" /codon_start=1 /transl_table=11 /product="mannose-6-phosphate isomerase" /protein_id="NP_460428.1" /db_xref="GI:16764813" /db_xref="GeneID:1252985" /translation="MQKLINSVQNYAWGSKTALTELYGIANPQQQPMAELWMGAHPKS SSRITTANGETVSLRDAIEKNKTAMLGEAVANRFGELPFLFKVLCAAQPLSIQVHPNK RNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSDIVSLLQP VAGAHSAIAHFLQVPNAERLSQLFASLLNMQGEEKSRALAVLKAALNSQQGEPWQTIR VISEYYPDDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAG LTPKYIDIPELVANVKFEPKPAGELLTAPVKSGAELDFPIPVDDFAFSLHDLALQETS IGQHSAAILFCVEGEAVLRKDEQRLVLKPGESAFIGADESPVNASGTGRLARVYNKL" regulatory complement(1541985..1541990) /regulatory_class="ribosome_binding_site" /gene="manA" /locus_tag="STM1467" /note="putative RBS for manA; RegulonDB:STMS1H001689" regulatory 1542075..1542083 /regulatory_class="minus_35_signal" /note="putative -35_signal for fumA; RegulonDB:STMLTH004489" regulatory 1542099..1542107 /regulatory_class="minus_10_signal" /note="putative -10_signal for fumA; RegulonDB:STMLTH004489" regulatory 1542160..1542165 /regulatory_class="ribosome_binding_site" /note="putative RBS for fumA; RegulonDB:STMS1H001690" gene 1542178..1543824 /gene="fumA" /locus_tag="STM1468" /db_xref="GeneID:1252986" CDS 1542178..1543824 /gene="fumA" /locus_tag="STM1468" /EC_number="4.2.1.2" /note="fumarate hydratase class I; aerobic isozyme; (SW:FUMA_SALTY)" /codon_start=1 /transl_table=11 /product="fumarate hydratase" /protein_id="NP_460429.2" /db_xref="GI:1109557626" /db_xref="GeneID:1252986" /translation="MSNKPFFYQDPFPLKKDDTEYYLLTSEHVSVAEFEGQEILKVAP EALTLLARQAFHDASFMLRPAHQQQVADILRDPQASENDKYVALQFLRNSDIAAKGVL PTCQDTGTAIIVGKKGQRVWTGGGDEAALARGVYNTYIEDNLRYSQNAALDMYKEVNT GTNLPAQIDLYSVDGDEYKFLCIAKGGGSANKTYLYQETKALLTPGKLKNYLVDKMRT LGTAACPPYHIAFVIGGTSAEANLKTVKLASAKYYDALPTEGNEHGQAFRDIELEKEL LLEAQNLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINRDGIW IEKLERNPGKYIPEALRQAGEGEAVRVDLNRPMSEILQQLSQYPVSTRLSLNGTIIVG RDIAHAKLKERMDRGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGPTTAGRMDSYVDQ LQSQGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKRLECVEYPEL GMEAIWKIEVEDFPAFILVDDKGNDFFQQIQSSQCARCVK" gene 1543884..1545395 /gene="fumC" /locus_tag="STM1469" /db_xref="GeneID:1252987" regulatory 1543884..1543892 /regulatory_class="minus_35_signal" /gene="fumC" /locus_tag="STM1469" /note="putative -35_signal for fumC; RegulonDB:STMLTH004490" regulatory 1543911..1543919 /regulatory_class="minus_10_signal" /gene="fumC" /locus_tag="STM1469" /note="putative -10_signal for fumC; RegulonDB:STMLTH004490" regulatory 1543980..1543985 /regulatory_class="ribosome_binding_site" /gene="fumC" /locus_tag="STM1469" /note="putative RBS for fumC; RegulonDB:STMS1H001691" CDS 1543992..1545395 /gene="fumC" /locus_tag="STM1469" /EC_number="4.2.1.2" /note="fumarate hydratase Class II; similar to E. coli fumarase C= fumarate hydratase Class II; isozyme (AAC74683.1); Blastp hit to AAC74683.1 (467 aa), 91% identity in aa 1 - 467" /codon_start=1 /transl_table=11 /product="class II fumarate hydratase" /protein_id="NP_460430.1" /db_xref="GI:16764815" /db_xref="GeneID:1252987" /translation="MVTVRREKDSMGAIEVPADKLWGAQTQRSLEHFRISTEKMPVSL IHALALTKRAAAKVNQDLGLLAAEKASAIIQAADEVLAGKHADEFPLAIWQTGSGTQS NMNMNEVLANRASEILGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALREHL IPQLSALTDTLRDKSHAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLRHIEHS LPHVAELALGGTAVGTGLNTHPEYARRVAEELATITAAPFVTAPNKFEALATCDALVQ AHGALKGLAASLMKIANDVRWLASGPRCGIGEIAIPENEPGSSIMPGKVNPTQCEAVT MLCCQVMGNDVAINMGGASGNFELNVYRPMVIHNFLQTVRLLADGMESFNKHCASGIE PNRERITQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKASAVALGYLSDEEF DAWVRPELMVGSMTPGR" gene complement(1545392..1546321) /gene="tus" /locus_tag="STM1470" /db_xref="GeneID:1252988" CDS complement(1545392..1546321) /gene="tus" /locus_tag="STM1470" /note="DNA replication terminus site-binding protein (TER protein). (SW:TUS_SALTY)" /codon_start=1 /transl_table=11 /product="DNA replication terminus site-binding protein" /protein_id="NP_460431.1" /db_xref="GI:16764816" /db_xref="GeneID:1252988" /translation="MSRYDLVERLNGTFRQIEQHLAALTDNLQQHSLLIARVFSLPQV TKEAEHAPLDTIEVTQHLGKEAEALALRHYRHLFIQQQSENRSSKAAVRLPGVLCYQV DNATQLDLENQIQRINQLKTTFEQMVTVESGLPSAARFEWVHRHLPGLITLNAYRTLT LINNPATIRFGWANKHIIKNLSRDEVLSQLKKSLASPRSVPPWTREQWQFKLEREYQD IAALPQQARLKIKRPVKVQPISRIWYKGQQKQVQHACPTPIIALINTDNGAGVPDIGG LENYDADNIQHRFKPQAQPLRLIIPRLHLYVAD" gene complement(1546397..1547711) /gene="rstB" /locus_tag="STM1471" /db_xref="GeneID:1252989" CDS complement(1546397..1547698) /gene="rstB" /locus_tag="STM1471" /EC_number="2.7.3.-" /note="similar to E. coli sensor histidine protein kinase (RstA regulator) (AAC74681.1); Blastp hit to AAC74681.1 (433 aa), 82% identity in aa 1 - 433" /codon_start=1 /transl_table=11 /product="two-component system sensor histidine kinase RstB" /protein_id="NP_460432.1" /db_xref="GI:16764817" /db_xref="GeneID:1252989" /translation="MKKLFVQFYLLLFVCFLVMTLLVGLVYKFTAERAGRQSLDDLMK SSLYLMRSELREIPPREWGKTLKEMDLNLSFDLRVEPLNHYKLDAATTQRLREGDIVA LDDQYTFIQRIPRSHYVLAVGPVPYLYFLHQMRLLDIALMALIAFSLAFPVFIWMRPH WQEMLRLESAAQRFGEGHLTERLHFDNGSSFERLGVAFNQMADNINALIASKKQLIDG IAHELRTPLVRLRYRLEMSENLTPPESQALNRDIGQLEALIEELLTYARLDRPQNELM LTEPDLPAWLLAHLQDVQSVTPERAVNLVTCVIGDYGALDMRLMSRVLDNLLNNALRY SHTTVQVSLLLDGSQATLIVEDDGPGIEADARERVFEPFVRLDPSRDRATGGCGLGLA IVHSIALAMGGSVVCDESELGGAKFSFRWPVWHAMPDMTAA" regulatory complement(1547706..1547711) /regulatory_class="ribosome_binding_site" /gene="rstB" /locus_tag="STM1471" /note="putative RBS for rstB; RegulonDB:STMS1H001692" gene complement(1547809..1549522) /locus_tag="STM1472" /db_xref="GeneID:1252990" CDS complement(1547809..1549515) /locus_tag="STM1472" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460433.1" /db_xref="GI:16764818" /db_xref="GeneID:1252990" /translation="MLMISLVPSLLSRTALLFLLTATGAATAARPAADIILHNGNIIT LNDAQPQASALAISGSRIVAIGDDTATNEWRGDHTRTIDLQGKTVIPGLTDTHIHAIR GGQTWTFETYWYDSPSLKDALDKLRADANRRPHDQWVAVVGSWIPAQFAENRAPTVAE LSHALPDHPAYIQYLYDYALVNQRGIDVLGLNNTPPPDLAGIRVERDAKGSATGKLFG DIAAFNQLFASISRNADREGGLRQFFADMNARGVTGIIDPSAGPAAAYEPLFAMRNQG DLPLRVGYRIPVQPEAKGHEAQWFSNLMAFRPARADDGQLAFLGLGESLVAGMNDGVR MAPGFSSSEQDKTALRQVATFAAKRGIPLEIHAYTDDSADAILTIFEQVAQQYDLRPL RWSIAHLNTGSPQTLERMRKLGLAYTVQMGPYFEGLAIRDANPPGATDNSPPVRLALD KGLVVAGGTDSTRIGIAGVWHAIEYHITGIASGGSVRKPASERLTRLEALALYTRHAA WLAFAEQHRGQLRVGKQADLAVLNQPFMTMPEDRIDTIRAVLTLVDGRIVHESPDLNA GQ" regulatory complement(1549517..1549522) /regulatory_class="ribosome_binding_site" /locus_tag="STM1472" /note="putative RBS for STM1472; RegulonDB:STMS1H001693" gene complement(1549668..1550813) /gene="ompN" /locus_tag="STM1473" /db_xref="GeneID:1252991" CDS complement(1549668..1550801) /gene="ompN" /locus_tag="STM1473" /note="non-specific porin; similar to E. coli putative outer membrane protein (AAC74459.1); Blastp hit to AAC74459.1 (377 aa), 81% identity in aa 1 - 377" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460434.1" /db_xref="GI:16764819" /db_xref="GeneID:1252991" /translation="MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYF SDDSSKDGDQTYMRVGFKGETQINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGL KFGDYGSFDYGRNYGVLYDVEGWTDMLPEFGGDSYTYADNFMTGRANGVATYRNTDFF GLVDGLNFALQYQGANENQVSHEQEGTNNGGDRNVKNANGDGFGISSTYDLGMGVSFG AAYTTSDRTNGQVNYSTAGGDKADAWTVGAKYDANNIYLATMYSETRNMTPYGNDDCR SCVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGKDLTYNNVNGDDKDLVKYADVGATY YFNKNFSTYVDYKINLLDDDDQFYKDAGISTDDIVALGMVYQF" regulatory complement(1550808..1550813) /regulatory_class="ribosome_binding_site" /gene="ompN" /locus_tag="STM1473" /note="putative RBS for ompN; RegulonDB:STMS1H001694" gene 1550858..1551216 /locus_tag="STM1474" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1252992" gene complement(1551281..1552012) /gene="rstA" /locus_tag="STM1475" /db_xref="GeneID:1252993" CDS complement(1551281..1552012) /gene="rstA" /locus_tag="STM1475" /note="similar to E. coli response transcriptional regulatory protein (RstB sensor) (AAC74680.1); Blastp hit to AAC74680.1 (242 aa), 84% identity in aa 4 - 242" /codon_start=1 /transl_table=11 /product="two-component system response regulator RstA" /protein_id="NP_460435.1" /db_xref="GI:16764820" /db_xref="GeneID:1252993" /translation="MNRIVFVEDDAEVGSLIAAYLAKHDIDVIVEPRGDRAEDLILTT QPDLVLLDIMLPGKDGMTICRDLRHRWQGPIVLLTSLDSDMNHILALEMGACDYILKT TPPAVLLARLRLHLRQSEQTQQAKSLQESALTPHKALRFGALTIDPLNRAVQLNGDFI SLSTADFELLWELATHAGQIMDRDALLKTLRGVNYDGLDRSVDVAISRLRKKLLDSAA EPYRIKTIRNKGYLFAPHAWDETTG" gene 1552133..1552474 /gene="ydgC" /locus_tag="STM1476" /db_xref="GeneID:1252994" regulatory 1552133..1552138 /regulatory_class="ribosome_binding_site" /gene="ydgC" /locus_tag="STM1476" /note="putative RBS for ydgC; RegulonDB:STMS1H001696" CDS 1552139..1552474 /gene="ydgC" /locus_tag="STM1476" /note="similar to E. coli orf, hypothetical protein (AAC74679.1); Blastp hit to AAC74679.1 (111 aa), 81% identity in aa 1 - 111" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460436.1" /db_xref="GI:16764821" /db_xref="GeneID:1252994" /translation="MGLVIKAALGALVVVLIGLLSKTKNYYIAGLIPLFPTFALIAHY IVASERGIDAMRTTIAFSMWSIIPYFIYLATLWYFSGVMRLPVALGGAVVCWGLSAWL LIFCWIKWH" gene complement(1552536..1553928) /gene="ydgI" /locus_tag="STM1477" /db_xref="GeneID:1252995" CDS complement(1552536..1553918) /gene="ydgI" /locus_tag="STM1477" /note="similar to E. coli putative arginine/ornithine antiporter (AAC74677.1); Blastp hit to AAC74677.1 (460 aa), 92% identity in aa 1 - 460" /codon_start=1 /transl_table=11 /product="putative amino acid transporter" /protein_id="NP_460437.1" /db_xref="GI:16764822" /db_xref="GeneID:1252995" /translation="MEKKLGLSALTALVLSSMLGAGVFSLPQNMAAVASPAALLIGWA ITGVGILLLAFAMLILTRIRSELDGGIFTYAREGFGELIGFCSAWGYWLCAVIANVSY LVIVFSALSFFTDTPALRLFGDGNTWQAIVGASVLLWIVHFLILRGVQTAASINLVAT LAKLLPLGAFIVLAIMMFKLDTFTLDFTGVELGIPVWEQVKNTMLITLWVFIGVEGAV VVSARAKNKRDVGRATLLAVLAALGIYLLVTLLSLGVLARPELAEMRNPSMAGLMVKM MGPWGEIIIAAGLIVSVCGAYLSWTIMAAEVPFLAAAYKSFPGIFARQNAQGAPSASL WLTNICVQICLVLIWLTGSDYNTLLTIASEMILVPYFLVGAFLLKIATRPLHRAVGIG ACIYGLWLLYASGPMHLLLSVVLYAPGLLVFLYARRTHKHDNVLNRQEVVLIGLLLVA AVPATWMLVG" regulatory complement(1553923..1553928) /regulatory_class="ribosome_binding_site" /gene="ydgI" /locus_tag="STM1477" /note="putative RBS for ydgI; RegulonDB:STMS1H001697" gene complement(1554217..1555174) /gene="ydgH" /locus_tag="STM1478" /db_xref="GeneID:1252996" CDS complement(1554217..1555161) /gene="ydgH" /locus_tag="STM1478" /note="similar to E. coli orf, hypothetical protein (AAC74676.1); Blastp hit to AAC74676.1 (314 aa), 90% identity in aa 1 - 314" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460438.1" /db_xref="GI:16764823" /db_xref="GeneID:1252996" /translation="MKLKNTLLASALLSAAAFSVHAATELTPEQAAALKPYDRIVITG RFNAIGDAVSAVSRRADKEGAASFYVVDTSEFGNSGNWRVVADVYKADAPKADAPKNR VINGIVELPKDQAVQLEPYDTVTVQGFYRSQPEVNDAITKAAKQKGAYAFYIVRQIDA NQGGNQRITAFIYKQDAKKRIVQSPDAIPADSEAGRAALAQGGEAAKKVEIPGVATSA SPSAEVGRFFETQSSKGGRYTVTLPDGTKVEELNKATAAMMVPFDSVKFTGNYGNMTE ISYQVAKRAAKKGAKYYHITRQWQERGNNITISADLYK" regulatory complement(1555169..1555174) /regulatory_class="ribosome_binding_site" /gene="ydgH" /locus_tag="STM1478" /note="putative RBS for ydgH; RegulonDB:STMS1H001698" gene 1555562..1557217 /gene="pntA" /locus_tag="STM1479" /db_xref="GeneID:1252997" regulatory 1555562..1555570 /regulatory_class="minus_35_signal" /gene="pntA" /locus_tag="STM1479" /note="putative -35_signal for pntA; RegulonDB:STMLTH004491" regulatory 1555586..1555594 /regulatory_class="minus_10_signal" /gene="pntA" /locus_tag="STM1479" /note="putative -10_signal for pntA; RegulonDB:STMLTH004491" regulatory 1555672..1555677 /regulatory_class="ribosome_binding_site" /gene="pntA" /locus_tag="STM1479" /note="putative RBS for pntA; RegulonDB:STMS1H001699" CDS 1555688..1557217 /gene="pntA" /locus_tag="STM1479" /EC_number="1.6.1.2" /note="proton pump; similar to E. coli pyridine nucleotide transhydrogenase, alpha subunit (AAC74675.1); Blastp hit to AAC74675.1 (510 aa), 92% identity in aa 1 - 510" /codon_start=1 /transl_table=11 /product="NAD(P) transhydrogenase subunit alpha" /protein_id="NP_460439.1" /db_xref="GI:16764824" /db_xref="GeneID:1252997" /translation="MRIGIPKERLPNETRVAATPKTVEQLLKLGFSVAIESGAGQLAS FDDKAFAQAGADIVDGNAIWQSEIILKVNAPEEEEIALLNPGTTLVSFIWPAQNPGLM EKLAERKVTVMAMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAA GKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE EAGSGDGYAKVMSEAFIKAEMALFAAQAKEVDIIVTTALIPGKPAPKLITRDMVDSMK AGSVIVDLAAQNGGNCEYTVANQVVTTDNGVKVIGYTDLPGRLPTQSSQLYGTNLVNL LKLLCKEKDGNIDVDFDDVVIRGVTVIRDGDITWPAPPIQVSAQPQAAPKAAPAPKEP EKPTSPWRKYALMALAIILFGWLADVAPKEFLGHFTVFALACVVGYYVVWNVSHALHT PLMSVTNAISGIIVVGALLQIGQGGWVSFLSFIAVLIASINIFGGFTVTQRMLKMFRK N" gene 1557216..1558616 /gene="pntB" /locus_tag="STM1480" /db_xref="GeneID:1252998" regulatory 1557216..1557221 /regulatory_class="ribosome_binding_site" /gene="pntB" /locus_tag="STM1480" /note="putative RBS for pntB; RegulonDB:STMS1H001700" CDS 1557228..1558616 /gene="pntB" /locus_tag="STM1480" /EC_number="1.6.1.2" /note="proton pump; similar to E. coli pyridine nucleotide transhydrogenase, beta subunit (AAC74674.1); Blastp hit to AAC74674.1 (462 aa), 95% identity in aa 1 - 462" /codon_start=1 /transl_table=11 /product="NAD(P) transhydrogenase subunit beta" /protein_id="NP_460440.1" /db_xref="GI:16764825" /db_xref="GeneID:1252998" /translation="MSGGLVTAAYIVAAILFIFSLAGLSKHETSRQGNNFGIAGMAIA LLATIFGPDTGNVAWILVAMIIGGAIGIRMAKKVEMTEMPELVAILHSFVGLAAVLVG FNSYLYHDASLAPVLVNIHLTEVFLGIFIGAVTFTGSIVAFGKLRGKISSKPLMLPNR HKMNLAALVVSFLLLLVFVRTESVGLQVLALLLMTIIALAFGWHLVASIGGADMPVVV SMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFG TDGSSTGDDQEAGEHREITAEETAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLR ARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGAND TVNPAAQDDPRSPIAGMPVLEVWKAQNVVVFKRSMNTGYAGVQNPLFFKENTQMLFGD AKASVDAILKAL" gene complement(1558791..1559836) /locus_tag="STM1481" /db_xref="GeneID:1252999" CDS complement(1558791..1559825) /locus_tag="STM1481" /note="similar to E. coli putative transport protein (AAC74673.1); Blastp hit to AAC74673.1 (344 aa), 88% identity in aa 1 - 343" /codon_start=1 /transl_table=11 /product="pheromone autoinducer 2 transporter" /protein_id="NP_460441.1" /db_xref="GI:16764826" /db_xref="GeneID:1252999" /translation="MAKPIITLNGLKIVIMLGMLVVILSGIRFAADIIVPFILALFIA VVLNPVVQRMTRCRIPRVIAVSLLIVIIVMLMVLLLAYLGTSLNELARTLPQYRSSLV IPLQRIEPWLQRAGIGVSVDELAKYIDPNAAMTLVTNLLTQLSNAMSSIFLLLLTVVF MLLEVPQLPEKLQQMMSRPVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAAL DVRFAFVWGLLAFALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFG NILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQTTGGQSI AVLLSDLNKR" regulatory complement(1559831..1559836) /regulatory_class="ribosome_binding_site" /locus_tag="STM1481" /note="putative RBS for STM1481; RegulonDB:STMS1H001701" gene 1560230..1560605 /gene="ydgF" /locus_tag="STM1482" /db_xref="GeneID:1253000" regulatory 1560230..1560235 /regulatory_class="ribosome_binding_site" /gene="ydgF" /locus_tag="STM1482" /note="putative RBS for ydgF; RegulonDB:STMS1H001702" CDS 1560243..1560605 /gene="ydgF" /locus_tag="STM1482" /note="similar to E. coli possible chaperone (AAC74672.1); Blastp hit to AAC74672.1 (121 aa), 83% identity in aa 4 - 121" /codon_start=1 /transl_table=11 /product="multidrug transporter subunit MdtJ" /protein_id="NP_460442.1" /db_xref="GI:16764827" /db_xref="GeneID:1253000" /translation="MFYWILLALAIATEITGTLSMKWASVGNGNAGFILMLVMITLSY IFLSFAVKKIALGVAYALWEGIGILFITIFSVLLFDEALSTMKIAGLLTLVAGIVLIK SGTRKPGKPVKEATRATI" gene 1560579..1560921 /gene="ydgE" /locus_tag="STM1483" /db_xref="GeneID:1253001" regulatory 1560579..1560584 /regulatory_class="ribosome_binding_site" /gene="ydgE" /locus_tag="STM1483" /note="putative RBS for ydgE; RegulonDB:STMS1H001703" CDS 1560592..1560921 /gene="ydgE" /locus_tag="STM1483" /note="similar to E. coli possible chaperone (AAC74671.1); Blastp hit to AAC74671.1 (109 aa), 84% identity in aa 3 - 109" /codon_start=1 /transl_table=11 /product="multidrug transporter subunit MdtI" /protein_id="NP_460443.1" /db_xref="GI:16764828" /db_xref="GeneID:1253001" /translation="MQQFEWIHGAWLGLAIMLEIAANVLLKFSDGFRRKCYGILSLAA VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWVLFGQRLNPKGWVGVILLLAG MVMIKFA" gene complement(1560961..1561782) /locus_tag="STM1484" /db_xref="GeneID:1253002" CDS complement(1560961..1561782) /locus_tag="STM1484" /note="similar to E. coli orf, hypothetical protein (AAC74670.1); Blastp hit to AAC74670.1 (273 aa), 77% identity in aa 1 - 272" /codon_start=1 /transl_table=11 /product="serine protease" /protein_id="NP_460444.1" /db_xref="GI:16764829" /db_xref="GeneID:1253002" /translation="MHKTIAVLLGIVCFLPVMAKAGGAETDATDASDVKTLFFNHDDR VPVADPTQSPWDAIGQLETASGNLCTATLISPHIALTAGHCLLTPPKGKPDKAVALRF VARKGVWRYEIHGIEGRVEPSLGRRLKADGDGWIVPPAAASWDFGLVILRYPPSGITP VPLFTGDKAALTAALKAADRKVTQSGYPEDHLNALYSHQDCVVTGWAQNAVLSHQCDT LPGDSGSPLLLHTDSGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLKALAQD" gene complement(1562051..1562346) /locus_tag="STM1485" /db_xref="GeneID:1253003" CDS complement(1562051..1562335) /locus_tag="STM1485" /note="similar to E. coli acid shock protein (AAC74669.1); Blastp hit to AAC74669.1 (111 aa), 67% identity in aa 2 - 81, 46% identity in aa 30 - 111" /codon_start=1 /transl_table=11 /product="acid shock protein" /protein_id="NP_460445.3" /db_xref="GI:1109557627" /db_xref="GeneID:1253003" /translation="MGLNENQIEGIKMKKVLALVVAAAMGLSSAAFAAETATPAKTAA PAKTTQTTQHHKKQHKKTVEQKAQAAKKHQKKGGKAPAKTTSKPTTQPAA" regulatory complement(1562341..1562346) /regulatory_class="ribosome_binding_site" /locus_tag="STM1485" /note="putative RBS for STM1485; RegulonDB:STMS1H001704" gene complement(1562694..1563958) /gene="ynfM" /locus_tag="STM1486" /db_xref="GeneID:1253004" CDS complement(1562694..1563947) /gene="ynfM" /locus_tag="STM1486" /note="similar to E. coli putative transport protein (AAC74668.1); Blastp hit to AAC74668.1 (417 aa), 91% identity in aa 1 - 417" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460446.1" /db_xref="GI:16764831" /db_xref="GeneID:1253004" /translation="MSRTTILDDATASDIDEQRHSQPVQFIKRGTAPFMRVTLALFSA GLATFALLYCVQPILPVLSQEFGVSPASSSVSLSISTAMLAIGLLFTGPLSDAIGRKP VMVTALLLASCCTLLSTMMTSWHGILIMRALIGLSLSGVAAVGMTYLSEEIHPSFVAF SMGLYISGNSIGGMSGRLLSGVMTDFFNWRIALAAIGCFALASALMFWKILPASQHFR PTSLRPKTLFINFRLHWRDRGLPLLFAEGFLLMGAFVTLFNYIGYRLMLSPWELSQAV VGLLSVAYLTGTWSSPKAGAMTSRYGRGPVMLFSTAVMLGGLLLTLFTSLWLIFAGML LFSAGFFAAHSVASSWIGPRARRAKGQASSLYLFSYYLGSSIAGTLGGVFWHSYGWNG VGGFIALMLVLAILVGTRLHHRLHA" regulatory complement(1563953..1563958) /regulatory_class="ribosome_binding_site" /gene="ynfM" /locus_tag="STM1486" /note="putative RBS for ynfM; RegulonDB:STMS1H001705" gene 1564067..1564966 /gene="ynfL" /locus_tag="STM1487" /db_xref="GeneID:1253005" CDS 1564067..1564966 /gene="ynfL" /locus_tag="STM1487" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC74667.1); Blastp hit to AAC74667.1 (297 aa), 83% identity in aa 1 - 297" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_460447.1" /db_xref="GI:16764832" /db_xref="GeneID:1253005" /translation="MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQILEQQ VGARLLARTNRSVALTAAGRQFLVDSRHILSLVNDAAARAERLHQGEAGEIRIGFTSS APFIRAVSHTFSLFRQSYPGVHMQTREMNTREQIAPLNEGVLDIGLLRNTPLPDTLNR EVILHEPLMAMIPREHRLAQKPVVSLTELAEEPFVFFDPHVGTGLYDDILGLMRRYNL SPTITQEVGEAMTIIGLVAAGLGVSILPASFKRVQMSEMRWVPLAEEDAVSEMWLVWP KHHEQSHAVQRFCQLLLLAARRD" gene 1565081..1566314 /gene="mlc" /locus_tag="STM1488" /db_xref="GeneID:1253006" regulatory 1565081..1565086 /regulatory_class="ribosome_binding_site" /gene="mlc" /locus_tag="STM1488" /note="putative RBS for mlc; RegulonDB:STMS1H001706" CDS 1565094..1566314 /gene="mlc" /locus_tag="STM1488" /note="global repressor of carbohydrate metabolism (pts operon) (NagC/XylR family); similar to E. coli putative NAGC-like transcriptional regulator (AAC74666.1); Blastp hit to AAC74666.1 (406 aa), 90% identity in aa 1 - 406" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_460448.1" /db_xref="GI:16764833" /db_xref="GeneID:1253006" /translation="MVADSQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAP ASITKIVREMLEAHLVQELEIKEAGSRGRPAVGLMVETEAWHYLSIRISRGEIFLALR DLSSKLVVEECLPLPLTEATPLLERIITHVDRFFTRHQQKLERLTSIAITLPGIIDTE NGVVHRMPYYEDVKEMPLGDSLERHTGVPVYIQHDISAWTMAEALFGASRGARDVIQV VIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSVLE LTQLRLNQSMSSMLHGQPLTVDSLCQAAMQGDLLAKDIISGVGAHVGRILAIMVNLFN PQKILIGSPLSKAADILFPAIADSIRQQALPAYSRNTVVESTQFTNQGTMAGAALVKD AMYNGSLLIRLLQG" gene 1566428..1567135 /gene="ynfK" /locus_tag="STM1489" /db_xref="GeneID:1253007" regulatory 1566428..1566433 /regulatory_class="ribosome_binding_site" /gene="ynfK" /locus_tag="STM1489" /note="putative RBS for ynfK; RegulonDB:STMS1H001707" CDS 1566440..1567135 /gene="ynfK" /locus_tag="STM1489" /EC_number="6.3.3.3" /note="similar to E. coli orf, hypothetical protein (AAC74665.1); Blastp hit to AAC74665.1 (235 aa), 93% identity in aa 5 - 233" /codon_start=1 /transl_table=11 /product="putative dethiobiotin synthase" /protein_id="NP_460449.1" /db_xref="GI:16764834" /db_xref="GeneID:1253007" /translation="MLKRFFITGTDTSVGKTVVSRALLQALASSGKSVAGYKPVAKGS KETAEGMRNKDALVLQSVSSLELPYEAINPIALSEEESSVAHSCPINYTLLSNGLASL SDKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAVA NDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIRLS MLGSVLAVDRIMA" gene complement(1567091..1568380) /locus_tag="STM1490" /db_xref="GeneID:1253008" CDS complement(1567091..1568380) /locus_tag="STM1490" /note="similar to E. coli putative chloride channel (AAC74664.1); Blastp hit to AAC74664.1 (438 aa), 78% identity in aa 9 - 437" /codon_start=1 /transl_table=11 /product="voltage-gated ClC-type chloride channel ClcB" /protein_id="NP_460450.3" /db_xref="GI:1109557628" /db_xref="GeneID:1253008" /translation="MHRLHAYPDLRAMFRRLLIATLIGILAALAVAAFRHAMQLLEWI FLSNDTGSLVNAAEGLSPWRRLITPALGGLAAGLLLWGWQKMNQQRPHAPTDYMEALQ TDGQFDVGASLVKSLASLLVVVSGSAIGREGAMILLAALAASSFARRFTPREEWKLWI ASGAAAGMAGAYHAPLAGSLFIAEILFGTLMLASLGPVVVSAVVALLTTHVLNGSDSL LYTVHLTVDLHAREYVMIVSTGLVAGLCGPLLMWLMTASHNSFLRLKLSPPWQLALGG LIVGLLSLLTPTVWGNGYSVVQSFLLSPPLFSLIGGIFVCKILAVLASSGSGAPGGVF TPTLFVGLSIGMFLGRIWGFWLPGSDEIAILLGLAGMATLLAATTHAPIMSTLMICEM TGEYQLLPGLLIACVVASVLSRTLRHDSIYRQHAAEH" gene complement(1568516..1569670) /locus_tag="STM1491" /db_xref="GeneID:1253009" CDS complement(1568516..1569664) /locus_tag="STM1491" /note="ATPase component; similar to E. coli putative ATP-binding component of a transport system (AAC75190.1); Blastp hit to AAC75190.1 (308 aa), 41% identity in aa 1 - 297" /codon_start=1 /transl_table=11 /product="glycine/betaine ABC transporter ATP-binding protein" /protein_id="NP_460451.1" /db_xref="GI:16764836" /db_xref="GeneID:1253009" /translation="MIKLENLTKQFVQKKGQPLKAVDNVNLNVPEGEMCVLLGPSGCG KTTTLKMINRLIAPSSGNILINGENTNDMDAVTLRRNIGYVIQQIGLFPNMTIEENIT VVPRMLGWDKARCKQRAEELMDMVALDARKFLHRYPKEMSGGQQQRIGVIRALAADPP VLLMDEPFGAVDPINREVIQNQFLDMQRKLKKTVMLVSHDIDEALKLGDRIAVFRQGR IVQCASPDELLAKPANEFVGSFVGQDRTLKRLLLVSAGDVTDQQPTITARPSTPLSEA FGIMDDHDIRAITVIDNDGKPLGFVKRREARNASGICADITHPFRITGKAEDNLRIVL SRLYESNTSWMPIVDEDGRYNGEISQDYIADYLSSGRTRRALNIHENS" gene complement(1569664..1570318) /locus_tag="STM1492" /db_xref="GeneID:1253010" CDS complement(1569664..1570311) /locus_tag="STM1492" /note="inner membrane component; similar to E. coli putative transport system permease protein (AAC75189.1); Blastp hit to AAC75189.1 (243 aa), 36% identity in aa 47 - 239" /codon_start=1 /transl_table=11 /product="choline ABC transporter permease" /protein_id="NP_460452.1" /db_xref="GI:16764837" /db_xref="GeneID:1253010" /translation="MDTIHYMLDNAGYLASLTFQHLWLVALAVGLAIIIGVPLGVLIV RHKWLATPVLGAATLLLTIPSIALFGLMIPLFSLIGHGIGVLPAVTAVFLYSLLPIVR NTHTALDSLPPGLREAGRGIGMTFWQRLRWVEIPMALPVIFGGIRTAVVMNIGVMAIA AVIGAGGLGLLLLNGISGSDIRMLIAGALMICLLAIVLDWLLHRLQVVLTPKGIR" regulatory complement(1569665..1569670) /regulatory_class="ribosome_binding_site" /locus_tag="STM1492" /note="putative RBS for STM1491; RegulonDB:STMS1H001708" regulatory complement(1570313..1570318) /regulatory_class="ribosome_binding_site" /locus_tag="STM1492" /note="putative RBS for STM1492; RegulonDB:STMS1H001709" gene complement(1570321..1571230) /locus_tag="STM1493" /db_xref="GeneID:1253011" CDS complement(1570321..1571223) /locus_tag="STM1493" /note="ABC transport system; similar to E. coli putative transport system permease protein (AAC75192.1); Blastp hit to AAC75192.1 (305 aa), 28% identity in aa 9 - 302" /codon_start=1 /transl_table=11 /product="glycine/betaine ABC transporter substrate-binding protein" /protein_id="NP_460453.1" /db_xref="GI:16764838" /db_xref="GeneID:1253011" /translation="MRFKKHLLGWLAATLLFSSQTQAAPLVLATKSFTEQHILSAMTV QYLQKKGFQVQPQTNIAAVISRNAMVNKQIDITWEYTGTSLIIFNRIDKRMSPQETYD TVKRLDAKLGLVWLKPADMNNTYAFAMQRKRAESENITTISQMVAKIEQVRQNDPDHN WMLGLDLEFAGRSDGMKPLQQAYQMQLDRPQIRQMDPGLVYNAVRDGLVDAGLVYTTD GRVKGFDLKVLEDDKGFFPSYAVTPVVRKEVLEANPGLDDALNTLSGLLNNDVISTLN AQVDIEHRTPQQVAHQFLQDKGLL" regulatory complement(1571225..1571230) /regulatory_class="ribosome_binding_site" /locus_tag="STM1493" /note="putative RBS for STM1493; RegulonDB:STMS1H001710" gene complement(1571252..1571968) /locus_tag="STM1494" /db_xref="GeneID:1253012" CDS complement(1571252..1571962) /locus_tag="STM1494" /note="permease components; similar to E. coli putative transport system permease protein (AAC75189.1); Blastp hit to AAC75189.1 (243 aa), 43% identity in aa 42 - 241" /codon_start=1 /transl_table=11 /product="glycine/betaine ABC transporter permease" /protein_id="NP_460454.1" /db_xref="GI:16764839" /db_xref="GeneID:1253012" /translation="MHTLTLKRVLGFTIVILLLLALFIWGIGLETLKARQVDLLYLGQ RHLMLVFTSMFFALLVGIPSGILLSRPAAKGFAEYVMQIFNVGNTLPPLAVLALAMVI IGIGDTPAIVALFLASLLPIVRNTYAGLCSVPASLIEAANGIGMTKWQRLRQVELPNA WPVMLSGIRIATAINVGTAPLAFLIGASSYGELIFPGIYLNDFPTLILGATATALFAL ILDTLLAWFGRRLSPHTV" regulatory complement(1571963..1571968) /regulatory_class="ribosome_binding_site" /locus_tag="STM1494" /note="putative RBS for STM1494; RegulonDB:STMS1H001711" gene complement(1572267..1572881) /gene="ynfI" /locus_tag="STM1495" /db_xref="GeneID:1253013" CDS complement(1572267..1572881) /gene="ynfI" /locus_tag="STM1495" /note="similar to E. coli putative oxidoreductase component (AAC74663.1); Blastp hit to AAC74663.1 (207 aa), 76% identity in aa 4 - 207" /codon_start=1 /transl_table=11 /product="DMSO reductase maturation protein DsmD" /protein_id="NP_460455.1" /db_xref="GI:16764840" /db_xref="GeneID:1253013" /translation="MTTFLQRDDFAVTARVLGALFYYSPESHETAPLVQALLNDDWQA QWPLDAEALAPVAAMFKTHSEESLPQAWQRLFIGPYALPSPPWGSVWLDRESVLFGDS TLALRQWMRENGIQFEMQQNEPEDHFGSLLLLAAWLAENDRHHECEQLLAWHLFPWSS RFLDVFIDHAGHPFYQALGQLARLTLAQWQAQLIIPVAVKPLFR" gene complement(1572924..1573794) /locus_tag="STM1496" /db_xref="GeneID:1253014" CDS complement(1572924..1573781) /locus_tag="STM1496" /note="similar to E. coli putative DMSO reductase anchor subunit (AAC74662.1); Blastp hit to AAC74662.1 (284 aa), 76% identity in aa 1 - 284" /codon_start=1 /transl_table=11 /product="putative dimethylsulfoxide reductase" /protein_id="NP_460456.1" /db_xref="GI:16764841" /db_xref="GeneID:1253014" /translation="MGSGWHEWPLMIFTVFGQCVVGALIVSGLGWLTAKDDTIARQRI VRSMFFLWLVMGLGFLASIMHLGSPMRAFNSLNRVGASALSNEIAAGSVFFAVGGIWW LVAVLGKMPPALGKVWLLVSMALGVAFIWAMTLVYQIDTVPTWYNGYTTLAFFLTAFL CGPVFAALLLRIARVPFCSVTFASISGLALVVCVTVIVLQGLSLSTIHSSVQQASHLA PDYGMLQVWRIVLLAAGLGCWLCPLIRRREPHTVGLLLGVVLVLAGEIIGRGLFYGLH MTVGMAVAG" gene complement(1573783..1574412) /locus_tag="STM1497" /db_xref="GeneID:1253015" CDS complement(1573783..1574400) /locus_tag="STM1497" /EC_number="1.8.99.-" /note="similar to E. coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); Blastp hit to AAC73981.1 (205 aa), 96% identity in aa 1 - 205" /codon_start=1 /transl_table=11 /product="dimethylsulfoxide reductase, chain B" /protein_id="NP_460457.1" /db_xref="GI:16764842" /db_xref="GeneID:1253015" /translation="MTTQYGFFIDSSRCTGCKTCELACKDYKDLTPDVSFRRIYEYAG GDWQEDNGVWHQNVFAYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGC RYCHMACPYGAPQYNAAKGHMTKCDGCYDRVADGKKPICVESCPLRALDFGPIDELRK KHGELAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPKEV" regulatory complement(1573789..1573794) /regulatory_class="ribosome_binding_site" /locus_tag="STM1497" /note="putative RBS for STM1496; RegulonDB:STMS1H001712" regulatory complement(1574407..1574412) /regulatory_class="ribosome_binding_site" /locus_tag="STM1497" /note="putative RBS for STM1497; RegulonDB:STMS1H001713" gene complement(1574411..1576846) /locus_tag="STM1498" /db_xref="GeneID:1253016" CDS complement(1574411..1576846) /locus_tag="STM1498" /EC_number="1.8.99.-" /note="similar to E. coli putative oxidoreductase, major subunit (AAC74660.1); Blastp hit to AAC74660.1 (808 aa), 91% identity in aa 2 - 807" /codon_start=1 /transl_table=11 /product="dimethyl sulfoxide reductase subunit A" /protein_id="NP_460458.1" /db_xref="GI:16764843" /db_xref="GeneID:1253016" /translation="MKITNPEALMAASLSRRSLVKTSAIGSLALASSAFTLPFSRIAH AAADLASGNVAEKAVWSSCTVNCGSRCLLRLHVKDDTVYWVESDTTGNDEYGNHQVRA CLRGRSIRRRMNHPDRLKYPMKRVGKRGEGKFERISWDEALDTIGDNLKRILKDYGNE AVHVLYGTGVDGGNITNSNVPYRLMNACGGYLSRYGSYSTAQISAAMSYMFGGNDGNS PDDIANTKLVVMFGNNPAETRMSGGGVTYYVEQARERSNARMIVIDPRYNDTAAGRED EWLPIRPGTDGALAAAIAWVLITEDLIDKPFLDKYCIGYDETTLPASAPRNAHYKAYI LGQGDDGIAKTPQWAAQITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTAR AIAMLSVLTGNVGINGGNSGVREGTWDLGVEWFSMLENPVKTQISVFTWTDAIDHGAE MTATRDGVRGKDKLDVPIKFLWCYASNTLINQHGDIAHTHEVLQDDSKCEMIVGIEHF MTASAKYCDILLPDLMPTEQEDLISHESAGNMGYVILGQPATSPKFERKPIYWTLSEV AKRLGPDVYQTFTEGRTQHEWVKYLHAKTKARNPEMPDYEEMKQTGIFKKKCPEEHYV AFRAFREDPAANPLKTPSGKIEIYSERLATLANTWELKKDEIIHPLPAYTPGFDGWDD PLRQRYPLQLTGFHYKARTHSSYGNIDILQQACPQEIWINPIDAQARGIQHGDTVRVF NQNGEMLIPAKVTPRILPGVTAIGQGAWLNADMFGDKVDRGGSINILTSHRPSPLAKG NPSHSNLVQVEKA" gene complement(1576945..1579395) /locus_tag="STM1499" /db_xref="GeneID:1253017" CDS complement(1576945..1579386) /locus_tag="STM1499" /EC_number="1.8.99.-" /note="similar to E. coli putative oxidoreductase, major subunit (AAC74659.1); Blastp hit to AAC74659.1 (808 aa), 86% identity in aa 1 - 808" /codon_start=1 /transl_table=11 /product="putative dimethyl sulphoxide reductase, chain A1" /protein_id="NP_460459.1" /db_xref="GI:16764844" /db_xref="GeneID:1253017" /translation="MMPGEKQQTGVSRRTLVKSAALGSLALAAGGVSLPFGMRTAAAA VQQAMRNEEDKIVWGACSVNCGSRCALRLHVKDNEVWWVETDNTGDDVYGNHQVRACL RGRSIRRRINHPDRLNYPMKRVGRRGEGKFERISWQEALDTISASLKKTVETYGNEAV YIHYSSGIVGGNITRSSPAASPVKRLMNCYGGSLNQYGSYSTAQISCAMPYTYGSNDG NSTSDIENSKLVVMFGNNPAETRMSGGGITWFLEQARERSNARMIVIDPRYTDTAAGR EDEWIPIRPGTDAALVAGIAWVLINENLVDQPFLDNYCIGYDEKTLPADAPPNGHYKA YILGQGEDGIAKTPQWASHITGIPADRIIKLAREIGSVKPAYICQGWGPQRQANGEQT ARAIAMLPILTGNVGIHGGNSGARESTYTITIERLPVLENPVKTAISCFSWTDAIARG PEMTALRDGVRGKDKLDVPIKFLWNYAGNTLINQHSDINKTHEILQDEAKCEMIVVID NFMTSSAKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFIQPATTPKFERKPIYWVLS EIARRLGDDVYQRFTEGRTQAQWLQYLYAKMQARDPALPAYDDLKKMGIYKRKDPNGH FVAYKKFREDPQANPLKTPSGKIEIYSSKLAHIASTWELAEGDVISPLPIYTPTFEGW DDPKRSTFPLQLFGFHYKSRTHSSYGNIDVLQAACRQEVWINPLDAQKRGIANGDKVR VFNDRGEVRLPAKVTPRILPGVSAMGQGAWHNADMAGDKIDHGACINTLTTLRPSPLA KGNPQHTNLVEIEKI" regulatory complement(1579390..1579395) /regulatory_class="ribosome_binding_site" /locus_tag="STM1499" /note="putative RBS for STM1499; RegulonDB:STMS1H001714" gene complement(1579540..1579857) /gene="ynfD" /locus_tag="STM1500" /db_xref="GeneID:1253018" CDS complement(1579540..1579848) /gene="ynfD" /locus_tag="STM1500" /note="similar to E. coli orf, hypothetical protein (AAC74658.1); Blastp hit to AAC74658.1 (115 aa), 71% identity in aa 14 - 115" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_460460.1" /db_xref="GI:16764845" /db_xref="GeneID:1253018" /translation="MMKIATAIAALALVSAPSLVMAAPGSCERVKSDIEQRIINNGVP ADNFTLTIVPNDQADQPDSQVVGHCANDTHKILYTRTSSGNAPANTSPAQDGSSAEPQ " regulatory complement(1579852..1579857) /regulatory_class="ribosome_binding_site" /gene="ynfD" /locus_tag="STM1500" /note="putative RBS for ynfD; RegulonDB:STMS1H001715" gene 1579943..1580662 /gene="ynfC" /locus_tag="STM1501" /db_xref="GeneID:1253019" CDS 1579943..1580662 /gene="ynfC" /locus_tag="STM1501" /note="similar to E. coli orf, hypothetical protein (AAC74657.1); Blastp hit to AAC74657.1 (248 aa), 72% identity in aa 13 - 248" /codon_start=1 /transl_table=11 /product="putative inner membrane lipoprotein" /protein_id="NP_460461.3" /db_xref="GI:1109557629" /db_xref="GeneID:1253019" /translation="MIRVKKPLLLTLLCMILAGCDNPKSLESFTPEMASFSNEFDFDP LRGPVKDFSQTLMSENGEVAKQVTGTLSQEGCFDTLELHDLENNTGLALVLDANYYRD AQTLEKKVQLQGKCQLAALPSAGVTWETDDNGFVVSATGKEMKVEYRYDSEGYPLGKT TINSQNTLSVTAKPSADPRKKLDYTAVSRVDDRQVGNVTQSCEYDAYANPVDCRLVIV DESVKPAVSHHYTIKNRIDYY" gene complement(1580703..1581274) /gene="speG" /locus_tag="STM1502" /db_xref="GeneID:1253020" CDS complement(1580703..1581263) /gene="speG" /locus_tag="STM1502" /EC_number="2.3.1.57" /note="similar to E. coli spermidine N1-acetyltransferase (AAC74656.1); Blastp hit to AAC74656.1 (186 aa), 91% identity in aa 1 - 186" /codon_start=1 /transl_table=11 /product="spermidine acetyltransferase" /protein_id="NP_460462.1" /db_xref="GI:16764847" /db_xref="GeneID:1253020" /translation="MTSDYKVRLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVEL SDLYDKHIHDQSERRFVVECDGENAGLVELVEINHVHRRAEFQIIISPEYQGKGLASR AAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFRVEGELIHEFFINGEYRNTI RMCIFQQQYLDEHKTSGSTLLKPTAQ" regulatory complement(1581269..1581274) /regulatory_class="ribosome_binding_site" /gene="speG" /locus_tag="STM1502" /note="putative RBS for speG; RegulonDB:STMS1H001716" gene complement(1581299..1581652) /gene="ynfB" /locus_tag="STM1503" /db_xref="GeneID:1253021" CDS complement(1581299..1581640) /gene="ynfB" /locus_tag="STM1503" /note="similar to E. coli orf, hypothetical protein (AAC74655.1); Blastp hit to AAC74655.1 (113 aa), 81% identity in aa 1 - 113" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460463.1" /db_xref="GI:16764848" /db_xref="GeneID:1253021" /translation="MNNTLSKRLCLTAMLTLAAVVYTTSAFAETSKLVIESGDSAQSR QEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRC LDRRTGRVITP" regulatory complement(1581647..1581652) /regulatory_class="ribosome_binding_site" /gene="ynfB" /locus_tag="STM1503" /note="putative RBS for ynfB; RegulonDB:STMS1H001717" gene 1581793..1582119 /gene="ynfA" /locus_tag="STM1504" /db_xref="GeneID:1253022" CDS 1581793..1582119 /gene="ynfA" /locus_tag="STM1504" /note="similar to E. coli orf, hypothetical protein (AAC74654.1); Blastp hit to AAC74654.1 (108 aa), 88% identity in aa 1 - 108" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460464.1" /db_xref="GI:16764849" /db_xref="GeneID:1253022" /translation="MLKTTLLFFVTALCEIIGCFLPWLWLKRGASVWWLLPAAASLAL FVWLLTLHPAASGRVYAAYGGVYVCTALLWLRVVDGVRLTVYDWCGALIALCGMLIIV VGWGRT" gene 1582230..1583455 /gene="rspA" /locus_tag="STM1505" /db_xref="GeneID:1253023" regulatory 1582230..1582235 /regulatory_class="ribosome_binding_site" /gene="rspA" /locus_tag="STM1505" /note="putative RBS for rspA; RegulonDB:STMS1H001718" CDS 1582241..1583455 /gene="rspA" /locus_tag="STM1505" /note="similar to E. coli starvation sensing protein (AAC74653.1); Blastp hit to AAC74653.1 (404 aa), 94% identity in aa 1 - 404" /codon_start=1 /transl_table=11 /product="bifunctional D-altronate/D-mannonate dehydratase" /protein_id="NP_460465.1" /db_xref="GI:16764850" /db_xref="GeneID:1253023" /translation="MKIVGAEVFVTCPGRNFVTLKITTEDGITGLGDATLNGRELPVA SYLTDHLCPQLIGRDARRIEDIWQFFYKGAYWRRGPVTMSAISAVDMALWDIKAKAAN MPLYQLLGGASREGVMVYCHTTGHTIDDVLEDYARHKEQGFKAIRVQCGVPGMKTTYG MAKGKGLAYEPATKGQWPEEQLWSTEKYLDFTPKLFDAVRNTFGFNEHLLHDMHHRLT PIEAARFGKCIEDYRLFWMEDPTPAENQACFRLIRQHTVTPIAVGEVFNSIWDCKQLI EEQLIDYIRTTLTHAGGITGMRRIADFASLYQVRTGSHGPSDLSPVCMAAALHFDLWV PNFGVQEFMGYSEQMLEVFPHNWTFEGGYMHPGDKPGLGIEFDEKLAAKYPYDPAYLP VARLEDGTLWNW" gene 1583454..1584485 /gene="rspB" /locus_tag="STM1506" /db_xref="GeneID:1253024" regulatory 1583454..1583459 /regulatory_class="ribosome_binding_site" /gene="rspB" /locus_tag="STM1506" /note="putative RBS for rspB; RegulonDB:STMS1H001719" CDS 1583466..1584485 /gene="rspB" /locus_tag="STM1506" /EC_number="1.1.1.-" /note="similar to E. coli starvation sensing protein (AAC74652.1); Blastp hit to AAC74652.1 (339 aa), 75% identity in aa 1 - 339" /codon_start=1 /transl_table=11 /product="Zn-dependent oxidoreductase" /protein_id="NP_460466.1" /db_xref="GI:16764851" /db_xref="GeneID:1253024" /translation="MKSIVIEKPNTLTIETRALPQPAPGEVRIKVKLAGICGSDSHIY RGHNPFAKYPRVIGHEFFGVIDAVGDNVNHDRIGERVSVDPVISCGHCYPCSVGKPNV CTSLVVLGVHRDGGFSEYAVAPARNAHRIPDNIADHHAVMVEPFTIAANVTGQVNPTE QDVALIYGAGPMGLTTVQALKGVYQVKTVIVVDRIEERLAMAKQSGADWTLNNGQHSL AEFLQQKALKPTLIVDAACHPAILQEAITLASPAARIVLMGFSSDPCEIVQQGITGKE LAIYSSRLNANKFPVVIDWLNKGLIDPDKLITHTFDYQHVTDAIELFEKDQRQCCKVL LTFAK" gene 1584539..1585516 /gene="ydfJ" /locus_tag="STM1507" /db_xref="GeneID:2673769" CDS 1584539..1585516 /gene="ydfJ" /locus_tag="STM1507" /note="similar to E. coli putative transport protein (AAC74616.1); Blastp hit to AAC74616.1 (427 aa), 86% identity in aa 1 - 293" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_447926.1" /db_xref="GI:1109557630" /db_xref="GeneID:2673769" /translation="MTQIKHERSTQDLVRAAVSGWLGTALEFMDFQLYSLGAALVFHE IFFPEQSAAMALILAMGTYGAGYIARIIGAFVFGKMGDRIGRKKVLFITITMMGICTT LIGVLPTYAQIGIFAPVLLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSLVA MGTNCGTLSATAIWAVMFFALEREQLIAWGWRIPFLASVVVMIFAIWLRMNLKESPVF EKVSEGEKSPALTPASENTLGAMFTSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTL LFNKSIPTDALMISSVIGFITIPLLGWLSDKYGRRLPYIILNISAIILA" gene 1586051..1587528 /gene="ydfI" /locus_tag="STM1508" /db_xref="GeneID:1253026" regulatory 1586051..1586056 /regulatory_class="ribosome_binding_site" /gene="ydfI" /locus_tag="STM1508" /note="putative RBS for ydfI; RegulonDB:STMS1H001720" CDS 1586062..1587528 /gene="ydfI" /locus_tag="STM1508" /note="similar to E. coli putative oxidoreductase (AAC74615.1); Blastp hit to AAC74615.1 (486 aa), 81% identity in aa 1 - 484" /codon_start=1 /transl_table=11 /product="D-mannonate oxidoreductase" /protein_id="NP_460468.1" /db_xref="GI:16764853" /db_xref="GeneID:1253026" /translation="MQNRLLSAKATLPDYDRAALAARMVHLGFGAFHRAHQGVYTDIL AAEQHSDWGYYEVNLIGGEQQIADLKQQDNLYTVAEMSAEAWTARVVGVVKAALHVQV DGLERVLAAMCEPQIAIVSLTITEKGYCHSPATGQLLLEHPMIAADLQNPHQPLTAPG IIVEALARRKAAGLPAFTVMSCDNMPENGHVTRQVVTAYAREVDAELAIWIEQNVTFP STMVDRIVPAVTPETLDKIEQLTGVRDPAGVACEPFRQWVIEDTFVAGRPLWENAGAT LVADVVPFEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMADDNYRLTAQALMLREQAP TLKVQGVDLQRYADQLIARYRNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLANHSDF DLLALGVAGWMRYVGGVDEQGKAIDVSDPLLPVIQRAVANSEEGASRVKALLGMAEIF GNDLPQAARFTQKVQEAYDSLLTYGAKASVAKYAERLK" gene complement(1587595..1587812) /gene="ydfZ" /locus_tag="STM1509" /db_xref="GeneID:1253027" CDS complement(1587595..1587798) /gene="ydfZ" /locus_tag="STM1509" /note="similar to E. coli orf, hypothetical protein (AAC74614.1); Blastp hit to AAC74614.1 (67 aa), 79% identity in aa 1 - 67" /codon_start=1 /transl_table=11 /product="selenoprotein YdfZ" /protein_id="NP_460469.1" /db_xref="GI:16764854" /db_xref="GeneID:1253027" /translation="MMTYDRNRNAITTGSRVMISGTGHTGIIKAIESEGLDAGQIRRG KTVIVEGCEGKFAPVELIRLGMN" regulatory complement(1587807..1587812) /regulatory_class="ribosome_binding_site" /gene="ydfZ" /locus_tag="STM1509" /note="putative RBS for ydfZ; RegulonDB:STMS1H001721" gene complement(1587979..1588673) /gene="ydfH" /locus_tag="STM1510" /db_xref="GeneID:1253028" CDS complement(1587979..1588665) /gene="ydfH" /locus_tag="STM1510" /note="similar to E. coli orf, hypothetical protein (AAC74613.1); Blastp hit to AAC74613.1 (228 aa), 86% identity in aa 1 - 228" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="NP_460470.1" /db_xref="GI:16764855" /db_xref="GeneID:1253028" /translation="MTVETQLNPTQPVNQQIYRILRRDIVHCLIPPGTPLSEKEVSTR FNVSRQPVREAFIKLAENGLIQIRPQRGSYVNKISLSQVQNGCFVRQAIECAVVRRAA AMITDNQCYQLAQNLHLQHIAIERKQIDDFFQLDDDFHQKLAQIADCQLAWDTIENIK ATIDRVRYMSLDHVSPPEMLLRQHHDIFSALENRDGNAVESAMTQHLQEISESVQLIR QENSGWFSEE" regulatory complement(1588668..1588673) /regulatory_class="ribosome_binding_site" /gene="ydfH" /locus_tag="STM1510" /note="putative RBS for ydfH; RegulonDB:STMS1H001722" gene complement(1588795..1589554) /gene="ydfG" /locus_tag="STM1511" /db_xref="GeneID:1253029" CDS complement(1588795..1589541) /gene="ydfG" /locus_tag="STM1511" /EC_number="1.-.-.-" /note="similar to E. coli putative oxidoreductase (AAC74612.1); Blastp hit to AAC74612.1 (248 aa), 88% identity in aa 1 - 247" /codon_start=1 /transl_table=11 /product="NADP-dependent 3-hydroxy acid dehydrogenase" /protein_id="NP_460471.1" /db_xref="GI:16764856" /db_xref="GeneID:1253029" /translation="MIVLVTGATAGFGECIARRFVENGHKVIATGRRHERLQALKDEL GENVLTAQLDVRNRAAIEEMMASLPAQWRDIDVLVNNAGLALGLEPAHKASVEDWETM IDTNNKGLIYMTRAVLPGMVERNRGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLN LRTDLHGTAVRVTDIEPGLVGGTEFSSVRFKGDDEKAGKTYENTTALTPEDITEAVWW VATLPAHVNINTVEMMPVTQSFAGLSVHRS" regulatory complement(1589549..1589554) /regulatory_class="ribosome_binding_site" /gene="ydfG" /locus_tag="STM1511" /note="putative RBS for ydfG; RegulonDB:STMS1H001723" gene 1589668..1591722 /gene="dcp" /locus_tag="STM1512" /db_xref="GeneID:1253030" regulatory 1589668..1589673 /regulatory_class="ribosome_binding_site" /gene="dcp" /locus_tag="STM1512" /note="putative RBS for dcp; RegulonDB:STMS1H001724" CDS 1589680..1591722 /gene="dcp" /locus_tag="STM1512" /EC_number="3.4.15.5" /note="peptidyl-dipeptidase DCP. (SW:DCP_SALTY)" /codon_start=1 /transl_table=11 /product="dipeptidyl carboxypeptidase II" /protein_id="NP_460472.1" /db_xref="GI:16764857" /db_xref="GeneID:1253030" /translation="MSTNPLLDQSMLPYQAPRFDRIKDCHYRPAFDEGVRQKRVEIEA IVNHPAAPDFTNTLLALEQSGALLSRVTSVFFAMTAAHTNDELQRLDEAFSAELAALS NDIYLNSALFARVDAVWQQRHSLGLDDESLRLVDVIHQRFVLAGAQLAEEDKARLKVL NTESATLMSQFNQRLLAASKAGGLAVDDAHCLAGLSPEEMTVAAEAAREKGLEERWFI PLLNTTQQPALATLRDRQTRENLFAASWTRAEKGDAHDTRAIVQRLVEIRRCQAKLLG FPNYAAWKMADQMAKTPQAALSFMRGIVPPARQRVLNEQAEIQNVIDGEQGGYTVQAW DWMFYAEQVRREKYALDEAQLKPYFALNTVLQEGVFWTANQLFGITFVERFDIPVYHP DVRVWEIFDSDGVGMALFYGDFFARDSKSGGAWMGNFVEQSTLNETRPVIYNVCNYQK PVDGQPALLLWDDVITLFHEFGHTLHGLFAVQRYATLSGTNTPRDFVEFPSQINEHWA SHPRVFERYARHVDSGEKMPADLQERMRKASLFNKGYDMTELLGAALLDMRWHMLEES VAEQSVAEFEQQALAAEHLDLPAVPPRYRSSYFAHIFGGGYAAGYYAYLWTQMLADDG YQWFVEQGGLTRENGQRFRDAILARGNSTDLETLYSAWRGHEPHIDPMLQYRGLDR" gene 1592060..1592249 /locus_tag="STM1513" /db_xref="GeneID:1253031" regulatory 1592060..1592065 /regulatory_class="ribosome_binding_site" /locus_tag="STM1513" /note="putative RBS for STM1513; RegulonDB:STMS1H001725" CDS 1592067..1592249 /locus_tag="STM1513" /note="hypothetical protein (gi|6851081)" /codon_start=1 /transl_table=11 /product="stress-induced acidophilic repeat motif-containing protein" /protein_id="NP_460473.1" /db_xref="GI:16764858" /db_xref="GeneID:1253031" /translation="MAEHRGGSGNFAEDKEKASEAGRKGGQHSGGNFKNDPQRASEAG KKGGQNSHSGGRKSGN" gene complement(1592369..1592911) /gene="ydeJ" /locus_tag="STM1514" /db_xref="GeneID:1253032" CDS complement(1592369..1592896) /gene="ydeJ" /locus_tag="STM1514" /note="similar to E. coli orf, hypothetical protein (AAC74610.1); Blastp hit to AAC74610.1 (172 aa), 61% identity in aa 1 - 171" /codon_start=1 /transl_table=11 /product="competence protein ComA" /protein_id="NP_460474.1" /db_xref="GI:16764859" /db_xref="GeneID:1253032" /translation="MRLEQHDIVTLDEAESVDSLTKKLGDLLVNQKLRLTTAESCTGG KLASALCAAEDTPSFYGVGYVTFTDEAKAKILRVQRHSLAEHTAVSEAVVTEMAQGAK DQAEVNISIAISGYGGPEGGEDGTPAGTVWFAWNINNTTFTSRQHFNGDCQEVLEKCV RFALAELLFLLTKKA" regulatory complement(1592906..1592911) /regulatory_class="ribosome_binding_site" /gene="ydeJ" /locus_tag="STM1514" /note="putative RBS for ydeJ; RegulonDB:STMS1H001726" gene 1593312..1593715 /gene="ydeI" /locus_tag="STM1515" /db_xref="GeneID:1253033" regulatory 1593312..1593317 /regulatory_class="ribosome_binding_site" /gene="ydeI" /locus_tag="STM1515" /note="putative RBS for ydeI; RegulonDB:STMS1H001727" CDS 1593323..1593715 /gene="ydeI" /locus_tag="STM1515" /note="similar to E. coli orf, hypothetical protein (AAC74609.1); Blastp hit to AAC74609.1 (130 aa), 79% identity in aa 1 - 130" /codon_start=1 /transl_table=11 /product="TIGR00156 family protein" /protein_id="NP_460475.1" /db_xref="GI:16764860" /db_xref="GeneID:1253033" /translation="MKLQVAAFLSFLIMPYALADDQGGLKKDVAPPPPHAIEDGYRGT DDAEKMTIEQAKTLHDGATVSLRGNLIDHKGDDRYVFRDKSGEINVIIPSAVFDGREV QPDQMININGSLDKKAKEPLVRVNRLQK" gene complement(1594407..1595602) /gene="ydeE" /locus_tag="STM1516" /db_xref="GeneID:1253034" CDS complement(1594407..1595594) /gene="ydeE" /locus_tag="STM1516" /note="similar to E. coli putative transport protein (AAC74607.1); Blastp hit to AAC74607.1 (395 aa), 76% identity in aa 1 - 395" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_460476.1" /db_xref="GI:16764861" /db_xref="GeneID:1253034" /translation="MNPGLRRSTLALLASSLLLTIGRGATLPFMTIYLNRQYGLGVDL IGYALTSALTIGVIFSLGFGILADKFDKKRYMLLAIIAFACGFIAIPMVHNVVLVVLL FALINCAYSVFSTVLKAWFADNLTATTKTRIFSLNYTVLNIGWTVGPPLGTLLVMQSI NLPFWLAAICSAFPLVFIQVWVTRSVAASEGKNAAIWSPSVLLRDKALLWFTLSAFLA SFVGGAFASCISQYVMVVADSGFAEKVVAVVLPVNAVIVVSLQYAVGRRLTAVNIRPM MTTGTVFFIAGLIGFIFSGDNLFFWGLSAAVFTIGEIIYAPGEYMLIDNIAPAGMKAS YFSAQSLGWLGAAVNPLASGVILTTLPAWSLFVVLIIAIVFAWALMLKGMRITPTQQA ITC" regulatory complement(1595597..1595602) /regulatory_class="ribosome_binding_site" /gene="ydeE" /locus_tag="STM1516" /note="putative RBS for ydeE; RegulonDB:STMS1H001728" gene 1595813..1596724 /gene="ydeD" /locus_tag="STM1517" /db_xref="GeneID:1253035" regulatory 1595813..1595818 /regulatory_class="ribosome_binding_site" /gene="ydeD" /locus_tag="STM1517" /note="putative RBS for ydeD; RegulonDB:STMS1H001729" CDS 1595822..1596724 /gene="ydeD" /locus_tag="STM1517" /note="probable cysteine metabolite efflux pump. (SW:EAMA_SALTY)" /codon_start=1 /transl_table=11 /product="putative permease, integral membrane protein" /protein_id="NP_460477.1" /db_xref="GI:16764862" /db_xref="GeneID:1253035" /translation="MMSRKDGFLALLVVVVWGLNFVVIKVGLHHMPPLLLAGLRFLLV AFPAIFFVARPKVPLTLLLGYGLTISFGQFAFLFCAIKFGMPAGLASLVLQAQAFFTM ALGAFVFSERLQRKQLAGIALAIIGVLVLIEASLNGQHIAMSGFMLTLAAAFSWACGN IFNKKIMQHSPRPAVMSLVVWSALIPILPFLLSSLLLEGADHITQSLITIDMTTILSL LYLAFVATILGYGIWGALLGRYETWRVAPLSLLVPVVGLASAAVLLGETLTGMQLAGA VLIMAGLYINVFGFRVRRTARVSG" gene complement(1596843..1597070) /gene="marB" /locus_tag="STM1518" /db_xref="GeneID:1253036" CDS complement(1596843..1597058) /gene="marB" /locus_tag="STM1518" /note="multiple antibiotic resistance protein MARB. (SW:MARB_SALTY)" /codon_start=1 /transl_table=11 /product="multiple antibiotic resistance regulatory periplasmic protein MarB" /protein_id="NP_460478.1" /db_xref="GI:16764863" /db_xref="GeneID:1253036" /translation="MKMLFPALPGLLLIASGYGIAEQTLLPVAQNSRDVMLLPCVGDP PNDLHPVSVNSDKSDELGVPYYNDQHL" regulatory complement(1597065..1597070) /regulatory_class="ribosome_binding_site" /gene="marB" /locus_tag="STM1518" /note="putative RBS for marB; RegulonDB:STMS1H001730" gene complement(1597087..1597540) /gene="marA" /locus_tag="STM1519" /db_xref="GeneID:1253037" CDS complement(1597087..1597521) /gene="marA" /locus_tag="STM1519" /note="multiple antibiotic resistance protein MARA. (SW:MARA_SALTY)" /codon_start=1 /transl_table=11 /product="AraC/XylS family transcriptional activator of defense systems" /protein_id="NP_460479.4" /db_xref="GI:1109557631" /db_xref="GeneID:1253037" /translation="MSICSRKFCRRQKRGMTMSRRNTDAITIHSILDWIEDNLESPLS LEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYG FESQQTLTRTFKNYFDVPPHKYRITNMHGESRYMLPLNHGNY" gene complement(1597490..1598122) /gene="marR" /locus_tag="STM1520" /db_xref="GeneID:1253038" CDS complement(1597490..1597924) /gene="marR" /locus_tag="STM1520" /note="multiple antibiotic resistance protein MARR. (SW:MARR_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_460480.1" /db_xref="GI:16764865" /db_xref="GeneID:1253038" /translation="MKSTSDLFNEIIPLGRLIYMVNQKKDRLLNNYLSPLDITATQFK VLCSIRCAGCITPVELKKVLSVDLGALTRMLDRLLCKGWIERLPNPNDKRGVLVKLTP DGAAICEQCHQRPGQDLHQELTKNLTADEVATLEYLLKKILP" regulatory complement(1597535..1597540) /regulatory_class="ribosome_binding_site" /gene="marA" /locus_tag="STM1519" /note="putative RBS for marA; RegulonDB:STMS1H001731" regulatory complement(1597933..1597938) /regulatory_class="ribosome_binding_site" /gene="marR" /locus_tag="STM1520" /note="putative RBS for marR; RegulonDB:STMS1H001732" regulatory complement(1598098..1598106) /regulatory_class="minus_10_signal" /gene="marR" /locus_tag="STM1520" /note="putative -10_signal for marR; RegulonDB:STMLTH004494" regulatory complement(1598114..1598122) /regulatory_class="minus_35_signal" /gene="marR" /locus_tag="STM1520" /note="putative -35_signal for marR; RegulonDB:STMLTH004494" gene 1598164..1598848 /gene="marC" /locus_tag="STM1521" /db_xref="GeneID:1253039" regulatory 1598164..1598169 /regulatory_class="ribosome_binding_site" /gene="marC" /locus_tag="STM1521" /note="putative RBS for marC; RegulonDB:STMS1H001733" CDS 1598183..1598848 /gene="marC" /locus_tag="STM1521" /note="multiple antibiotic resistance protein MARC. (SW:MARC_SALTY)" /codon_start=1 /transl_table=11 /product="stress protection protein MarC" /protein_id="NP_460481.1" /db_xref="GI:16764866" /db_xref="GeneID:1253039" /translation="MMDLFKAIGLGLVVLLPLANPLTTVALFLGLAGNMNSAERNRQS YMASVYVFAIMMVAYYAGQLVMNTFGISIPGLRIAGGLIVAFIGFRMLFPQQKAHESP EAKSKSEELADEPTANIAFVPLAMPSTAGPGTIAMIISSASTVRHGGEFPDWVIMVAP PIIFLAVAVILWGCLRSSGAIMRLVGKGGIEAISRLMGFLLVCMGVQFIINGVLEIIK TYH" gene complement(1598895..1600085) /gene="ydeA" /locus_tag="STM1522" /db_xref="GeneID:1253040" CDS complement(1598895..1600085) /gene="ydeA" /locus_tag="STM1522" /note="contributes to control of arabinose regulon; similar to E. coli putative resistance / regulatory protein (AAC74601.1); Blastp hit to AAC74601.1 (396 aa), 88% identity in aa 1 - 394" /codon_start=1 /transl_table=11 /product="sugar transporter" /protein_id="NP_460482.1" /db_xref="GI:16764867" /db_xref="GeneID:1253040" /translation="MTINPVSRKVAWLRVVTLAIAAFIFNTTEFVPVGLLSDIAESFH MQTAQVGIMLTIYAWVVAVMSLPFMLLTSQMERRKLLIYLFVLFIASHVLSFLAWNFT VLVISRIGIAFAHAIFWSITASLAIRLAPAGKRAQALSLIATGTALAMVLGLPIGRVV GQYFGWRTTFFAIGMGALITLLCLIKLLPKLPSEHSGSLKSLPLLFRRPALMSLYVLT VVVVTAHYTAYSYIEPFVQNVAGLSANFATVLLLILGGAGIIGSLVFGKLGNRHASSL VSIAIALLVVCLLLLLPAAESEAHLAILSIFWGIAIMVIGLGMQVKVLALAPDATDVA MALFSGIFNIGIGAGALVGNQVSLHWSMSAIGYIGAIPACAALVWAVLIFRKWPVTLE EQPH" gene complement(1600201..1601082) /gene="yneJ" /locus_tag="STM1523" /db_xref="GeneID:1253041" CDS complement(1600201..1601073) /gene="yneJ" /locus_tag="STM1523" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC74599.1); Blastp hit to AAC74599.1 (293 aa), 84% identity in aa 1 - 283" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_460483.1" /db_xref="GI:16764868" /db_xref="GeneID:1253041" /translation="MDLTQLEMFNAVALTGSITQAAAKVHRVPSNLTTRIRQLEADLG VSLFIRENQRLRLSPAGHNFLRYSQQILALVDEARMVVAGEEPQGLFSLGALESTAAV RIPALLAGYNQRYPKIQFALTTGPSGAMLDGVLEGKLNAAFIDGPLMHPGLEGIPAYQ EEMMIVAPHGHSVVSRASEVNGYNIYAFRANCSYRRHFESWFHADGATPGTIHEMESY HGMLACVIAGAGIALMPASMLNSMPGHHQVEAWPLAEKWRWLNTWLMWRRGAMTRQLE AFIELLNAQLASTD" regulatory complement(1601077..1601082) /regulatory_class="ribosome_binding_site" /gene="yneJ" /locus_tag="STM1523" /note="putative RBS for yneJ; RegulonDB:STMS1H001734" gene 1601166..1602564 /gene="yneI" /locus_tag="STM1524" /db_xref="GeneID:1253042" regulatory 1601166..1601171 /regulatory_class="ribosome_binding_site" /gene="yneI" /locus_tag="STM1524" /note="putative RBS for yneI; RegulonDB:STMS1H001735" CDS 1601176..1602564 /gene="yneI" /locus_tag="STM1524" /EC_number="1.2.1.-" /note="similar to E. coli putative aldehyde dehydrogenase (AAC74598.1); Blastp hit to AAC74598.1 (470 aa), 81% identity in aa 9 - 470" /codon_start=1 /transl_table=11 /product="putative succinate-semialdehyde dehydrogenase" /protein_id="NP_460484.1" /db_xref="GI:16764869" /db_xref="GeneID:1253042" /translation="MTMMTATQALSVNPATGQTLAAMPWANAQEIEHALSLAASGFKK WKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPIKQARAEVTKSAALCDWYAE HGPAMLNPEPTLVENQQAVIEYRPLGVILAIMPWNFPLWQVLRGAVPILLAGNSYLLK HAPNVTGCAQMIARILAEAGTPAGVYGWVNANNEGVSQMINDPRIAAVTVTGSVRAGA AIGAQAGAALKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIV EEGIAQAFTDRFVAAAAALKMGDPLVEENDLGPMARFDLRDELHQQVQASVAEGARLL LGGEKIAGEGNYYAATVLADVTPDMTAFRQELFGPVAAITVAKDAAHALALANDSEFG LSATIFTADDTLAAEMAARLECGGVFINGYSASDARVAFGGVKKSGFGRELSHFGLHE FCNVQTVWKNRV" gene 1602625..1603563 /gene="yneH" /locus_tag="STM1525" /db_xref="GeneID:1253043" regulatory 1602625..1602630 /regulatory_class="ribosome_binding_site" /gene="yneH" /locus_tag="STM1525" /note="putative RBS for yneH; RegulonDB:STMS1H001736" CDS 1602637..1603563 /gene="yneH" /locus_tag="STM1525" /EC_number="3.5.1.2" /note="similar to E. coli putative glutaminase (AAC74597.1); Blastp hit to AAC74597.1 (308 aa), 91% identity in aa 1 - 308" /codon_start=1 /transl_table=11 /product="putative glutaminase" /protein_id="NP_460485.1" /db_xref="GI:16764870" /db_xref="GeneID:1253043" /translation="MARAMDNAILETILQRVRPLIGQGKVADYIPALASVEGSKLGIA ICTVDGQHYQAGDAHERFSIQSISKVLSLVVAMRHYPEEEIWQRVGKDPSGSPFNSLV QLEMEQGIPRNPFINAGALVVCDMLQGRLSAPRQRMLEVVRALCGVSDITYDATVARS EFEHSARNAAIAWLMKSFGNFHHDVPTVLQNYFHYCALKMSCMELARTFVFLANQGEA FHLDEPVVTPMQARQINALMATSGMYQNAGEFAWRVGLPAKSGVGGGIVAIVPHEMAI AVWSPELDPAGNSLAGIAALEQLTQTLGRSVY" gene 1603544..1603922 /gene="yneG" /locus_tag="STM1526" /db_xref="GeneID:1253044" regulatory 1603544..1603549 /regulatory_class="ribosome_binding_site" /gene="yneG" /locus_tag="STM1526" /note="putative RBS for yneG; RegulonDB:STMS1H001737" CDS 1603563..1603922 /gene="yneG" /locus_tag="STM1526" /note="similar to E. coli orf, hypothetical protein (AAC74596.1); Blastp hit to AAC74596.1 (119 aa), 80% identity in aa 1 - 118" /codon_start=1 /transl_table=11 /product="DUF4186 domain-containing protein" /protein_id="NP_460486.1" /db_xref="GI:16764871" /db_xref="GeneID:1253044" /translation="MNALEPLFARLARSTFRSRFRLGIKERQYCWDKGAEVIDKHAAD FIAQRLAPAHPANDGKQTPMRGHPVFIAQHATATCCRGCLAKWHQIPQGEPLSEAQQQ YIVSVIHYWLVIQMNQR" gene 1604132..1605093 /locus_tag="STM1527" /db_xref="GeneID:1253045" regulatory 1604132..1604137 /regulatory_class="ribosome_binding_site" /locus_tag="STM1527" /note="putative RBS for STM1527; RegulonDB:STMS1H001738" CDS 1604146..1605093 /locus_tag="STM1527" /note="similar to E. coli orf, hypothetical protein (AAC74593.1); Blastp hit to AAC74593.1 (321 aa), 84% identity in aa 11 - 321" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460487.1" /db_xref="GI:16764872" /db_xref="GeneID:1253045" /translation="MTVLFHQLKIIMIVRPQQHWIRLIFVWHGSVLSKIFSRLLLNFL LSIAVIIMLPWYTMLGIKFTLAPFSILGVAIAIFLGFRNNACYARYVEARHLWGQLMI ASRSILREVKTTLPDERGIEDFVRLQIAFAHCLRMTLRRQPQTQVLGNYLDQEALQKV VASHSPANRILLLMGEWLAIRRRSGKLSDILFHSLNNRLNDMSSVLAGCERIANTPVP FAYTLILHRTVYLFCIMLPFALVVDLHYMTPFISVLISYTFIALDALAEELEDPFGTE NNDLPLDAICNAIEIDLLQMNDERDIPAKRIPDKRYQLT" gene complement(1605149..1605691) /locus_tag="STM1528" /db_xref="GeneID:1253046" CDS complement(1605149..1605691) /locus_tag="STM1528" /codon_start=1 /transl_table=11 /product="DUF4440 domain-containing protein" /protein_id="NP_460488.1" /db_xref="GI:16764873" /db_xref="GeneID:1253046" /translation="MGITIMQKTSLLFSAAAITLTLMASSASAATPTAAQNEATSTVK QEITEGINRYLYSIDKADPTLGKQLFYVSPETSFIHPRGHERGWSQIAENFYGTTMGK TFSKRTLKLDAPPAIHVYGNAAVAEFDWHFTAVRRDNGQTQHTTGRESQVWAKIPNTG WRIVHVHYSGPAKTGVGEGY" gene 1605534..1605866 /locus_tag="STM1529" /db_xref="GeneID:1253047" regulatory 1605534..1605539 /regulatory_class="ribosome_binding_site" /locus_tag="STM1529" /note="putative RBS for STM1529; RegulonDB:STMS1H001739" CDS 1605540..1605866 /locus_tag="STM1529" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_447948.1" /db_xref="GI:1109557632" /db_xref="GeneID:1253047" /translation="MPSVISCLTVDVASFCAAVGVAADADDAIRVNVIAAAENNSDVF CIIVIPIWSVFETLYLSCYVHLYTKGAWLTNNKKHPSIKLPRKGSSAIKNIVFVCNGM TQNINI" gene 1606403..1607526 /locus_tag="STM1530" /db_xref="GeneID:1253048" regulatory 1606403..1606408 /regulatory_class="ribosome_binding_site" /locus_tag="STM1530" /note="putative RBS for STM1530; RegulonDB:STMS1H001740" CDS 1606408..1607526 /locus_tag="STM1530" /note="similar to E. coli putative outer membrane protein (AAC74459.1); Blastp hit to AAC74459.1 (377 aa), 61% identity in aa 2 - 377" /codon_start=1 /transl_table=11 /product="phosphoporin PhoE" /protein_id="NP_460490.1" /db_xref="GI:16764875" /db_xref="GeneID:1253048" /translation="MKKVVVLSAVAAAVMMAGAANAAEIYNKDGNKLDLYGKVDGLHY FSSNHSTDGDQSYIRMGIKGETQITDQLTGFGQWEYQVNANRPEDGDSSGSPQSWTRL GFAGLAFADMGSVDYGRNYGVLYDIGSWTDVLPEFGNDSYEASDNFMTGRANGVLTYR NNDFFGLVDGLNIALQYQGKNDGLSKEGDPLSNNARKSIAYQNGDGFGASATYDLGMG VSLGAAYTSSKRTLDQMTQDKYDNGDRAEAWTGGVKYDANNIYLAANYTRTYDMTYMG DTLGGFAHKTDNWEMVGQYQFDNGLRPSLAFLQSRANDVDGLGSFDLVKYIDVGSYYY FNKNMSAYVDYKINLLKDGNPSNPNTDNTVALGLVYEF" gene complement(1607667..1608015) /locus_tag="STM1531" /db_xref="GeneID:1253049" CDS complement(1607667..1608008) /locus_tag="STM1531" /note="similar to E. coli may modulate levels of hydrogenease-2 (AAC76027.1); Blastp hit to AAC76027.1 (113 aa), 38% identity in aa 1 - 113" /codon_start=1 /transl_table=11 /product="hydrogenase maturation nickel metallochaperone HypA" /protein_id="NP_460491.1" /db_xref="GI:16764876" /db_xref="GeneID:1253049" /translation="MHELALAQNIIELLEEQAVNHQFSKVKQVWLEIGVMACVEVPAL HFGLDVAARHTLADNARFHITIAPAQGWCLSCNQPFTSQTSTLCCPLCHSGKVQIDDS SRMRIREIEVE" regulatory complement(1608010..1608015) /regulatory_class="ribosome_binding_site" /locus_tag="STM1531" /note="putative RBS for STM1531; RegulonDB:STMS1H001741" gene complement(1608021..1608914) /locus_tag="STM1532" /db_xref="GeneID:1253050" CDS complement(1608021..1608908) /locus_tag="STM1532" /codon_start=1 /transl_table=11 /product="ATP/GTP-binding protein" /protein_id="NP_460492.1" /db_xref="GI:16764877" /db_xref="GeneID:1253050" /translation="MQRLTVYSHPLRIIWQEAPIGRLLQGATPVYAKTLISRLFTLCA QAHSAAAALLLFPEKKPDMQAAQQELARETLRRALTDWLPLFSHRQATAEEWALLRRG ELSPLASTIFFDDDPQTWLAAGVKGWEAWFLQERSETARWLAAVQNIITPTLPMASSP DHTLITHGPLDVSPLAIEYPLLSACCLSGKTTALRLLARCITLARSLSALPTLRWNRF DDGEWKIAVVETARGWLVHQARLTTSGNILDYRIISPTTRHAQPDGVIARELATIPLS LWSQQLQVIDPCVAVNIVE" gene complement(1608896..1609963) /locus_tag="STM1533" /db_xref="GeneID:1253051" CDS complement(1608896..1609957) /locus_tag="STM1533" /note="similar to E. coli nickel incorporation into hydrogenase-1 proteins (AAC74062.1); Blastp hit to AAC74062.1 (285 aa), 32% identity in aa 7 - 281" /codon_start=1 /transl_table=11 /product="hydrogenase-1 operon protein HyaF2" /protein_id="NP_460493.1" /db_xref="GI:16764878" /db_xref="GeneID:1253051" /translation="MNHSRTIPVVNIAGPGSQPEEEDFNFLPIPAGINLPLTPVLPEQ ALPAELRVARHILTTLIRDMDNPVATLPFPLSYKLNATEQQNSGLLDQLLGEGEISAR VLLSDGKEQRIQETVFTGVWRVREYNADQQRVADEIIIGPIPESIWQTHPQPPITPEL PPQPAGLMNGAFIAHEIAERVKQPVKEPHIINLTLLPVNDADREYLDHFLGEGCSAIF SRGYGKCRIVSTHFPGVWRVNYFNDMNTLLQDMIEIADIPDIAVAGIDDIEDAYAGLK NTLEWLKEYPVTENEPVVRMECKVCWWVYDPALGDDVWQIPPGVPFNQLPDYWCCPVC ETSKSGFMVIDEGNSSCKD" regulatory complement(1608909..1608914) /regulatory_class="ribosome_binding_site" /locus_tag="STM1532" /note="putative RBS for STM1532; RegulonDB:STMS1H001742" regulatory complement(1609958..1609963) /regulatory_class="ribosome_binding_site" /locus_tag="STM1533" /note="putative RBS for STM1533; RegulonDB:STMS1H001743" gene complement(1609975..1610392) /locus_tag="STM1534" /db_xref="GeneID:1253052" CDS complement(1609975..1610385) /locus_tag="STM1534" /note="similar to E. coli processing of HyaA and HyaB proteins (AAC74061.1); Blastp hit to AAC74061.1 (132 aa), 36% identity in aa 17 - 115" /codon_start=1 /transl_table=11 /product="putative hydrogenase" /protein_id="NP_460494.1" /db_xref="GI:16764879" /db_xref="GeneID:1253052" /translation="MTISPQNPVCPLADKGFLVTDAQTLPSLINAHPTLLVLLQSDPN KHPEVADSWVIIPEILKQFPATSYTAAFADSEQSELIAREYRILKYPALLFFRQHRFV GSLAGLYSWQEYSQRVAALLTTPGYRQDIPVITQ" gene complement(1610382..1610685) /locus_tag="STM1535" /db_xref="GeneID:1253053" CDS complement(1610382..1610681) /locus_tag="STM1535" /codon_start=1 /transl_table=11 /product="hydrogenase formation protein" /protein_id="NP_460495.1" /db_xref="GI:16764880" /db_xref="GeneID:1253053" /translation="MCIGVPVQVISPGQWFAKCRDRHGELIDVDIRLVAPPLAGAWLL TFGGAARREMDEAEAAEVLAALDSLEQAMLTQSDPLTGFADLLSRTPELPEHLKK" regulatory complement(1610387..1610392) /regulatory_class="ribosome_binding_site" /locus_tag="STM1535" /note="putative RBS for STM1534; RegulonDB:STMS1H001744" regulatory complement(1610680..1610685) /regulatory_class="ribosome_binding_site" /locus_tag="STM1535" /note="putative RBS for STM1535; RegulonDB:STMS1H001745" gene complement(1610681..1611296) /locus_tag="STM1536" /db_xref="GeneID:1253054" CDS complement(1610681..1611289) /locus_tag="STM1536" /note="similar to E. coli processing of HyaA and HyaB proteins (AAC74060.1); Blastp hit to AAC74060.1 (195 aa), 53% identity in aa 6 - 183" /codon_start=1 /transl_table=11 /product="hydrogenase expression/formation protein" /protein_id="NP_460496.1" /db_xref="GI:16764881" /db_xref="GeneID:1253054" /translation="MAEVTILGLGNLLWADEGFGVRAAEKLFEQYADNEKVDVVDGGT QGLALLPWLQQTEKLLIMDAIDFGMAPGSLAMFRDEQVPAYLTAKKLSLHQTSFSEVL ALLQLTGGQLSEIVLIGVQPECLDDYGGSLTPQVKAQLMPAVYLAQEVLAQWGITASS AALPTERLNHYSLCMERYEDERPDAQSACRVGDIRVLQREKS" regulatory complement(1611291..1611296) /regulatory_class="ribosome_binding_site" /locus_tag="STM1536" /note="putative RBS for STM1536; RegulonDB:STMS1H001746" gene complement(1611295..1612042) /locus_tag="STM1537" /db_xref="GeneID:1253055" CDS complement(1611295..1612038) /locus_tag="STM1537" /note="similar to E. coli probable Ni/Fe-hydrogenase 1 b-type cytochrome subunit (AAC74059.1); Blastp hit to AAC74059.1 (235 aa), 54% identity in aa 1 - 222" /codon_start=1 /transl_table=11 /product="Ni/Fe-hydrogenase, b-type cytochrome subunit" /protein_id="NP_460497.1" /db_xref="GI:16764882" /db_xref="GeneID:1253055" /translation="MLLIIMEGSWSGFRYDDDDSEVSMHLKEITSQGYYIYEAPVRLW HWITALSIVVLAVTGYFIGRPLPSIQGEATFMFWMGWIRLIHFTTAYIFTVALLFRIY WACVGNEYAREMFLVPFWRRAWRKGVISEIRWYFFLEKEAHRYYGHNPVAGLAVMFYF WMSVLMVCSGFALYGEGLGTDSWAYQWFGWMIRLTGNDSLALHFWHRLGMWFIIAFVI AHVYTAIREDIMSRQSVISVMISGWRWFR" gene complement(1611989..1613797) /locus_tag="STM1538" /db_xref="GeneID:1253056" CDS complement(1611989..1613791) /locus_tag="STM1538" /EC_number="1.12.7.2" /note="similar to E. coli hydrogenase-1 large subunit (AAC74058.1); Blastp hit to AAC74058.1 (597 aa), 66% identity in aa 1 - 597" /codon_start=1 /transl_table=11 /product="putative hydrogenase-1 large subunit" /protein_id="NP_460498.1" /db_xref="GI:16764883" /db_xref="GeneID:1253056" /translation="MAYPYQTQGFTLDNSGRRIVVDPVTRIEGHMRCEVNIDSNNVIT NAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALTSIRAVENALGIAIPDN ANCIRNMMQATLHVHDHLVHFYHLHALDWVDVVAALKADPHQTSAIAQSLSAWPLSSP GYFRDLQNRLKRFIESGQLGPFRNGYWGHPAMKLPPEANLLAVAHYLEALDFQKEIVK IHTVFGGKNPHPNWLVGGVPCAINLDETGAVGAVNMERLNLVSSIIQKARQFCEQVYL PDVLLIASYYKDWAKIGGGLSSMNLLAYGEFPDNPNDYSASNLLLPRGAIINGRFDEI HPVDLTAPDEIQEFVTHSWYTYGNGNNDKGLHPWDGLTEPQLVMGEHYKGTKTFIEQV DESAKYSWIKSPRWKGHAMEVGPLARYLIGYHQNKPEFKEPVDQLLSVLKLPKEALFS TLGRTAARALESVWAGNTLQYFFDRLMRNLKSGDTATANVTLWEPDTWPTSAKGVGFS EAPRGALGHWIKIANQKIDSYQCVVPTTWNAGPRDDKGQIGAYEAALMGTKLAVPDQP LEILRTLHSFDPCLACSTHVIDNHGGELVRVQVR" regulatory complement(1612037..1612042) /regulatory_class="ribosome_binding_site" /locus_tag="STM1537" /note="putative RBS for STM1537; RegulonDB:STMS1H001747" regulatory complement(1613792..1613797) /regulatory_class="ribosome_binding_site" /locus_tag="STM1538" /note="putative RBS for STM1538; RegulonDB:STMS1H001748" gene complement(1613794..1614902) /locus_tag="STM1539" /db_xref="GeneID:1253057" CDS complement(1613794..1614897) /locus_tag="STM1539" /EC_number="1.12.7.2" /note="similar to E. coli hydrogenase-1 small subunit (AAC74057.1); Blastp hit to AAC74057.1 (372 aa), 72% identity in aa 1 - 371" /codon_start=1 /transl_table=11 /product="putative hydrogenase-1 small subunit" /protein_id="NP_460499.1" /db_xref="GI:16764884" /db_xref="GeneID:1253057" /translation="MQTQDTFYQVMRRHGVTRRSFLKFCSLTATSLGLSSSMIPQIAY ALENKPRTPVIWLHGLECTCCTESFIRSAHPLAKDAILSLISLDYDDTIMAAAGQQAE QALADVMREYKGNYIVAVEGNAPLNEDGMFCILAGEPFLEKLKRVSADAKAIIAWGSC ASWGCVQAARPNPTKATPVHKLITDKPIIKVPGCPPIPEVMSAVITYMLAFDRIPPLD RLGRPKMFYGQRIHDKCYRRAHFDAGQFVEAWDDEGARKGYCLYKMGCKGPTTYNACS TVRWNDGVSFPIQSGHGCLGCSEDGFWDYGSFYSRATGIPQTGIEATADKIGLGVAGV AGAAAIAHATVSAIKHARNKNNTSSENAPEEKK" regulatory complement(1614897..1614902) /regulatory_class="ribosome_binding_site" /locus_tag="STM1539" /note="putative RBS for STM1539; RegulonDB:STMS1H001749" gene 1615319..1616417 /locus_tag="STM1540" /db_xref="GeneID:1253058" regulatory 1615319..1615324 /regulatory_class="ribosome_binding_site" /locus_tag="STM1540" /note="putative RBS for STM1540; RegulonDB:STMS1H001750" CDS 1615326..1616417 /locus_tag="STM1540" /codon_start=1 /transl_table=11 /product="putative hydrolase" /protein_id="NP_460500.1" /db_xref="GI:16764885" /db_xref="GeneID:1253058" /translation="MMKKSKAMLFIAPALFSYALAAQACTTLAIQDKQGDIFHGRTLE YMQDLPSWLTYYPAGTQFDKKTPDGSQGISYQAKYPILAITSTITDGDSRDILEGMNS AGLSFSENMIMNAQLPPLPASEYKQAIPVTSLGEWALARFATVGEVKQAIKEGKFWSP ELHRFGDLKSPFHYAFYDKKGGSIVVEVENGKFHVYDNPTRVMTNGPAFPWHLTNLNN YTQLTNVDRSSGTLGGIKVMQPDSGIAIADLPSSDTSVSRFIRGVYYTTYAPQATSAH DAMNTLAHIMSRFDRPKNITVDYMGSEGEGNATRKPVSEYTVWTTLSDLMHGEMMVRG YNDINYKTWSLSQFKNATAPVFEKINVKG" gene 1616457..1617254 /locus_tag="STM1541" /db_xref="GeneID:1253059" regulatory 1616457..1616462 /regulatory_class="ribosome_binding_site" /locus_tag="STM1541" /note="putative RBS for STM1541; RegulonDB:STMS1H001751" CDS 1616463..1617254 /locus_tag="STM1541" /note="similar to E. coli regulator for uxu operon (AAC77280.1); Blastp hit to AAC77280.1 (257 aa), 31% identity in aa 8 - 229" /codon_start=1 /transl_table=11 /product="putative gntR family regulatory protein" /protein_id="NP_460501.1" /db_xref="GI:16764886" /db_xref="GeneID:1253059" /translation="METTGGCFSLSCTVINYHDHQRQDGMLNPFKIPWIWIGGRMVIP EVRQERLYQKIANLIIKLINDNIFPPGTFLPPERELAKQLGVSRASLREALIVLEISG WIVIQSGNGVIVSDKKHLASDYTIEEILSTRELVDSHCARLAAQNDNVDVINQIEAIY HRMDQAINDNNVHGFYSLDKEFHLAISEASRNRVLFDMSRMLWEQRINIPYAGLDEQS GDRNVLLNLNKQHKAIVDAMRQSDADSAYEGSLEHLRYVRKIVGG" gene complement(1617313..1618344) /locus_tag="STM1542" /db_xref="GeneID:1253060" CDS complement(1617313..1618338) /locus_tag="STM1542" /note="similar to E. coli starvation sensing protein (AAC74652.1); Blastp hit to AAC74652.1 (339 aa), 32% identity in aa 1 - 337" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase" /protein_id="NP_460502.1" /db_xref="GI:16764887" /db_xref="GeneID:1253060" /translation="MKVKAVFINKPGEVETRWVDYPHKKENEVLIKVDAAGICGSDIG AFRGTNPLVTYPRIIGHEVTGIVLQEGAGMPDNIKEGDRVIVDPYIYCGHCYPCSVGR TNCCENLNVIGVHVDGAMQEVVTHPAHLIHKIPDNVPSEMAPLAEPLTIALHALHRAN VKAGEYVAIIGAGAIGLMAALSARHYKATPILIDIVEERLRYAQKLGVPYVLNAADDQ VIDAIKNITHGTMAQVVIEASGANSAIRNTLDLASFAGRISFTGWPKQETSLPTNLIT YKELDLRGSRTSAGEFDEALRMLSTLEINPQDVVSKVVNLDEIPDAVKELDRYPERYL KINAVFH" gene complement(1618313..1619606) /locus_tag="STM1543" /db_xref="GeneID:1253061" CDS complement(1618313..1619599) /locus_tag="STM1543" /note="similar to E. coli putative transport protein (AAC76161.1); Blastp hit to AAC76161.1 (444 aa), 32% identity in aa 17 - 433, 23% identity in aa 108 - 270" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_460503.1" /db_xref="GI:16764888" /db_xref="GeneID:1253061" /translation="MKRKTMGWLIVFLLFIVYMLNYMDRSALSITAPLIEKELGFNAA EMGMIFSAFFIGYALFNFIGGWASDKVGPKTVFLIAALLWSVFCGLTGLVTGLWTMLI VRVLFGMAEGPVSAAGNKIINNWISRKESATAIGIFSAGSPLGGAVSGPIVGLLALSL GWRPAFGIIFLFGLVWVLLWYFIVSDKPTMSKRLAPEERIDFENHEDVILSDDGRATP SLGYYMKQPMVWATTLAFFSYNYILFFFLTWFPSYLNHSLHLDIKEISIATVIPWVIG AIGMVLGGVCSDVIYRITGNALLSRRLILGVCLAGAAVCVAVSGTVSTIGSAITLMSV SLFLLYLTGPIYWAVIQDVVHKDKVGSVGGAMHGLANISGIIGPLVTGFIVQFSGKYD YAFYLAGAIAIVSSLLVFVFVKSKGFKANESQSCVH" regulatory complement(1618339..1618344) /regulatory_class="ribosome_binding_site" /locus_tag="STM1542" /note="putative RBS for STM1542; RegulonDB:STMS1H001752" regulatory complement(1619601..1619606) /regulatory_class="ribosome_binding_site" /locus_tag="STM1543" /note="putative RBS for STM1543; RegulonDB:STMS1H001753" gene complement(1619776..1621332) /gene="pqaA" /locus_tag="STM1544" /db_xref="GeneID:1253062" CDS complement(1619776..1621332) /gene="pqaA" /locus_tag="STM1544" /codon_start=1 /transl_table=11 /product="PhoPQ-regulated protein" /protein_id="NP_460504.1" /db_xref="GI:16764889" /db_xref="GeneID:1253062" /translation="MFKRYLWKLCWLAFALVKRGESMKKIYLVVIVLFFISTKVYTLL HNNIFFCRNSPECDLSHVLPDYREQISGTPLKYTLINTAPLAQVVVRHYELLSQHWSP DDMVTPAQWRHNVDIYIPETAKEHHALVVVNNGINYDKGVQITGKPGDFPQETLASIS RDTNTIVISVSDIPNQYLTFQDDKKPLKEDESVSRSWALFMEAPEQRKLMPLNIPMVT AISQAMRLAKKELTQWNINSFIITGISKRGWTTWLSAIADPDVEAIVPFAIDLLDIDA SLEHIYQSYGGNWPITFYPYYQQGIDEKIKSPAFTQLRQIIDPLRYLNTIYQPRLAIP KYIINASGDDFFVPDNTRFYYSKLPGVKSLRIVPNMNHYSINQFAEGSLVPFINRFQS KKTLPQLIDLIHHHLLTVYFSEAPVKVVRWTANNPNARDFRYACGIRYQPLTIDSPVN NKISITLNEPKTGWEATYIEATFNDGYVATSQVYITPDEKYPQTAPPSVNAACQTLPG RGLGENDSSD" gene complement(1621402..1622648) /locus_tag="STM1545" /db_xref="GeneID:1253063" CDS complement(1621402..1622643) /locus_tag="STM1545" /note="similar to E. coli putative DEOR-type transcriptional regulator (AAC73932.1); Blastp hit to AAC73932.1 (402 aa), 23% identity in aa 26 - 394" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_460505.1" /db_xref="GI:16764890" /db_xref="GeneID:1253063" /translation="MNTNVYENTDSETITPLNKRRILPVFLLVGLYAASTAAVMSVLP FYIREMGGSPLIIGIIIATEAFSQFCAAPLIGHLSDRVGRKRILIVTLAIAAISLLLL ANAQCILFILLARTLFGISAGNLSAAAAYIADCTHVRNRRQAIGILTGCIGLGGIVGA GVSGWLSRISLSAPIYAAFILVLGSALVAIWGLKDPSTTSRTTDKIAAFSARAILKMP VLRVLIIVMLCHFFAYGMYSSQLPVFLSDTFIWNGLPFGPKALSYLLMADGVINIFVQ LFLLGWVSQYFSERKLIILIFALLCTGFLTAGIATTIPVLVFAIVCISIADALAKPTY LAALSVHVSPARQGIVIGTAQALIAIADFISPVLGGFVLGYALYGVWIGIAISVAIIG LVTAMIYLSKSSVLIVKPETE" gene complement(1622633..1624152) /locus_tag="STM1546" /db_xref="GeneID:1253064" CDS complement(1622633..1624141) /locus_tag="STM1546" /note="similar to E. coli 3-(3-hydroxyphenyl)propionate hydroxylase (AAC73450.1); Blastp hit to AAC73450.1 (554 aa), 29% identity in aa 15 - 353, 35% identity in aa 494 - 521" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460506.1" /db_xref="GI:16764891" /db_xref="GeneID:1253064" /translation="MTRYTTTDVLICGAGVTGLTLAIELARHGVSFRLIEKRTTPFIG SRGKGIQPRTQEIFEDLGILNKVVAAGGLYPRLRTYRHDGSYVDSDIAHHTKPTHAEP YHLPLMVPQNVTETIMREQLKAWGHRVEFGCELRHFAQTPRTVTAYVAGPAGEEVIIA HYLIGADGGGSFVRKKLGVSFPGRTLGIHALVADASLSGLNRDVWHHFNDGDMARMIT ICPLAGTQLFQIQALLAPDDSQNFSADVLTAFLTERIGRTDVRIHSIPWVSKYQMNAR IAEHYRVGKVFLAGDAAHVHPPTGGQGLNTSIQDAYNLGWKMAASLRGAGEELLDSYE QERRPIAESLLHLSTRLLDSQKQRGIKRERDVQQLDIQYTNSPLAHTLPERQHGLQAG ERAPDAPLLGAGGQSLRLFQLLQGPDWNLLAYETHGKVIDARRGLRIHHIGEQDELID TLGHFRESYHLAPGQCVLIRPDGYVGAFFHGKQSNDIENYLSRFAIGIKDEY" regulatory complement(1622643..1622648) /regulatory_class="ribosome_binding_site" /locus_tag="STM1545" /note="putative RBS for STM1545; RegulonDB:STMS1H001754" regulatory complement(1624147..1624152) /regulatory_class="ribosome_binding_site" /locus_tag="STM1546" /note="putative RBS for STM1546; RegulonDB:STMS1H001755" gene 1624178..1624674 /locus_tag="STM1547" /db_xref="GeneID:1253065" regulatory 1624178..1624183 /regulatory_class="ribosome_binding_site" /locus_tag="STM1547" /note="putative RBS for STM1547; RegulonDB:STMS1H001756" CDS 1624186..1624674 /locus_tag="STM1547" /codon_start=1 /transl_table=11 /product="MarR family transcriptional regulator" /protein_id="NP_460507.1" /db_xref="GI:16764892" /db_xref="GeneID:1253065" /translation="MSENKNVQDTHISEQMKALHGALIRVVSALNRPRNDEKLIAEAG IQLDRALFSILISIERLGPIGVVELAERAGRDYTTVSRQVAKLEKLGLIIRQHNAIDR RIREAVISRTGKAMTERIDAAREQMGNVVFKDWPQDELDVFVRLMQKFADAMDSDASM PE" gene 1624906..1625946 /locus_tag="STM1548" /db_xref="GeneID:1253066" CDS 1624906..1625946 /locus_tag="STM1548" /note="similar to E. coli synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase (AAC73508.1); Blastp hit to AAC73508.1 (356 aa), 28% identity in aa 23 - 343" /codon_start=1 /transl_table=11 /product="putative S-adenosylmethionine:tRNA-ribosyltransferase-isomerase" /protein_id="NP_460508.3" /db_xref="GI:1109557633" /db_xref="GeneID:1253066" /translation="MTIPLRPHWIANDSYREKCKMLVLNRSKGEIHKVDFSKLTDYIK EGDVICFNDSTIINHMFICKTRQNRLIKIVLEGFLPNNRVIISGLLKERLNANDVFYL VDNPEISIKIEQRFSEESQYRAVVENHEALICYLASHGERLDEYVDSSLFYKYPDAYR SVFSKKYGSLEIPSAGIHFTWDLIQRIKDKGGLISFITLHVASTEMLSNRKIQTKCVE EVTINEEYYEVPQATADIINTAKQNGGRIFAVGTTVTRCLESAYSREHNCLKASSGWT ALYIHPGYQLKVVDCLLTNLHQPKTTHMVLTGQFAGVDLLIKAYTSEHIQSCQFDMFG DCMLIIQDEGQG" gene complement(1625998..1626399) /locus_tag="STM1549" /db_xref="GeneID:1253067" CDS complement(1625998..1626387) /locus_tag="STM1549" /note="similar to E. coli orf, hypothetical protein (AAC77205.1); Blastp hit to AAC77205.1 (131 aa), 82% identity in aa 1 - 129" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460509.1" /db_xref="GI:16764894" /db_xref="GeneID:1253067" /translation="MTQRIAVFPADRHSLYEEHGYSAAIRSGDLLFVSGQVGSHTDGT PEPDFQKQVRLAFENLKATLTAAGCTFDDIVDVTTFHTDPEQQLNDVMAVKQEIFAHP PYPNWTAVGVTWLAGFDFEIKVIARIP" regulatory complement(1626394..1626399) /regulatory_class="ribosome_binding_site" /locus_tag="STM1549" /note="putative RBS for STM1549; RegulonDB:STMS1H001757" gene complement(1626558..1626848) /locus_tag="STM1550" /db_xref="GeneID:1253068" CDS complement(1626558..1626842) /locus_tag="STM1550" /note="similar to E. coli orf, hypothetical protein (AAC74636.1); Blastp hit to AAC74636.1 (95 aa), 62% identity in aa 1 - 87" /codon_start=1 /transl_table=11 /product="addiction module toxin RelE" /protein_id="NP_460510.1" /db_xref="GI:16764895" /db_xref="GeneID:1253068" /translation="MTYKLAFNESALKEWKKLGHTIQEQFKKKLRERLENPRVPASQL HGRKDQYKIKLRGAGYRLVYSVEDEIITVTVIGVGKRENDAVYKMTRHRS" gene complement(1626832..1627088) /locus_tag="STM1551" /db_xref="GeneID:1253069" CDS complement(1626832..1627080) /locus_tag="STM1551" /codon_start=1 /transl_table=11 /product="plasmid stabilization protein" /protein_id="NP_460511.1" /db_xref="GI:16764896" /db_xref="GeneID:1253069" /translation="MAFQILTTTAASITELKRDPMGTFNAGDGAPVAILNRNEPAFYC VPPALYAHLMDILEDEELGRIIDERANERVIEVNIDDL" regulatory complement(1626843..1626848) /regulatory_class="ribosome_binding_site" /locus_tag="STM1551" /note="putative RBS for STM1550; RegulonDB:STMS1H001758" regulatory complement(1627083..1627088) /regulatory_class="ribosome_binding_site" /locus_tag="STM1551" /note="putative RBS for STM1551; RegulonDB:STMS1H001759" gene 1627912..1628820 /locus_tag="STM1552" /db_xref="GeneID:1253070" CDS 1627912..1628820 /locus_tag="STM1552" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460512.1" /db_xref="GI:16764897" /db_xref="GeneID:1253070" /translation="MNHVKKHVLWKDEYFERYYRLNPELVQKRLDKIYQAEDDLMVLI STQLFCFLQANGTLYFDGCYKTGKADNSLLCTNLALWSIELACDHFDIREERGHTTKF SEQGESWLTLFACNQFSLVPYCYPAIQRGFQSGVLKEIVPFYREQKLGILAMEIMARE RGDTINWEAMQVRVDPVYLDFCQNILLSSDDELVRTGLITLCDKHLEWTDFHNSDKHC CLTGYEIQRQDLLLWPFEYQAVKNWRARQGLSTPMIEHPLMNSPMTTANCPDFSQWQR PEWFNPLVDFLAQRRPELAFLRHLFI" gene complement(1628813..1629590) /locus_tag="STM1553" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1253071" gene complement(1630398..1631871) /locus_tag="STM1554" /db_xref="GeneID:1253072" CDS complement(1630398..1631864) /locus_tag="STM1554" /codon_start=1 /transl_table=11 /product="putative coiled-coil protein" /protein_id="NP_460513.1" /db_xref="GI:16764898" /db_xref="GeneID:1253072" /translation="MMSSITKSIQNEYVLLMENAFSEKYKYAFRNLELKELRRFILKE LISSPELDNQLTNLIVLLNKFWDTHAAALITEVRASKSYRLLLPIQRFGYNISNHLRS LGIYFDSIIMVDPLHFPSLSSLHSFLSLPPDNSYVRMRRLVLLEHVSNLFRAIPFMTI DDDYPIFLIVPELLDFDKERNHEQSAAFLSQLFFKDRKMDYATYLAFLEHFGRNEETF QKILTNKELLKTLLNNFNNIEKEVWVYDTDLKSFTTREVDLLDYDLPSAIATLLGKVE GAIYAQRSTQLSATLLGIDPVIYSNHMFLHEWTTEQLVKDYGKLNPLSSEEQAITMGL SAAEVKFLTALSDLELKKIRERGQLESLRHELRISRHDLQGKTPDQMQDAANNFSKHL INVVEEYGKSHESAIKNSKKKKISSGLIFAGTATLGIASLAMPQLTLLSAAATGIGLA FGGKSLADIFSEHKAHKNEIQILEKTPVSLLYGAYKKK" regulatory complement(1631866..1631871) /regulatory_class="ribosome_binding_site" /locus_tag="STM1554" /note="putative RBS for STM1554; RegulonDB:STMS1H001760" gene 1632123..1633130 /locus_tag="STM1555" /db_xref="GeneID:1253073" CDS 1632123..1633130 /locus_tag="STM1555" /note="similar to E. coli repressor of galETK operon (AAC75876.1); Blastp hit to AAC75876.1 (343 aa), 42% identity in aa 1 - 330" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_460514.1" /db_xref="GI:16764899" /db_xref="GeneID:1253073" /translation="MATIKDVASMAGVSTATVSRVINQTAWVEPVTRERVEKAMRDLN YRRNAAAIALAKRSGDMLGLLTGNLADPFFARLARGVEDVSRKQQYRLMVCSGGHDEE MEKAGLDFLVNQGCEAIVVHASRLPDKELLRYAAHFPALVVVNRYIAGMANRCIWLEN RSAAREATRYLLANGHRRIACVTSDLPIIDRQERLDGYREALEEYGISPDPRWVISVP FNEEGGERAAHQLINSGLPLTAAVTFNDVMAAGIMRILHQRGVQLPQQLSIVGFDDVV LARYLYPALTTMHYPVEQMARCAAQLAIQLYQGITPPPSSNHFNAELVIRDSVAPYFS R" gene 1633267..1634725 /locus_tag="STM1556" /db_xref="GeneID:1253074" regulatory 1633267..1633272 /regulatory_class="ribosome_binding_site" /locus_tag="STM1556" /note="putative RBS for STM1556; RegulonDB:STMS1H001761" CDS 1633274..1634725 /locus_tag="STM1556" /note="similar to E. coli transport of dicarboxylates (AAC73722.1); Blastp hit to AAC73722.1 (461 aa), 23% identity in aa 36 - 414" /codon_start=1 /transl_table=11 /product="Na+/H+ antiporter NhaC" /protein_id="NP_460515.1" /db_xref="GI:16764900" /db_xref="GeneID:1253074" /translation="MSASQNKKKTLSLGLALIPVISMLLLLIIGYGIMGLRIEPLLLC SAAVAAGIAWWQGYCWEDIINSVVDKLAKAMPVIMILICVGGLIGSWMFSGTIPYMVY WGLKLISPEYILIAAFFLTSVVSVCTGTSWGSAGTVGVALMGVAAGLDVSLAAAAGAV VSGAYFGDKISPLSDSTNFAAIVADTTLFEHIQHLLWTTLPSFLLAAVVYLIAGHSNM LGEVATPQRVTDIIHSLESLYHFNIVLILPPVIVLWGAIRKKPVIPLMLSACVLALFL GVIMQGLSIKQGLDAFIDGFDIAMFPQGAEGVVADVPRLLNRGGMFSMMGTILLVFCA FSFAGALTLTGALTIIINRLLTIIHSVGQLIAATIGTTILVTGATSDGKLALLVPAEL FKDAYRRMGLDTKNLSRTIEDAGTVIEPLLPWTSAGVYMATTLGVSTLDLLPWAIQCY AAIFFALIYGFSGIGIARTASASEKSPQSSVTE" gene 1634727..1635940 /locus_tag="STM1557" /db_xref="GeneID:1253075" regulatory 1634727..1634732 /regulatory_class="ribosome_binding_site" /locus_tag="STM1557" /note="putative RBS for STM1557; RegulonDB:STMS1H001762" CDS 1634738..1635940 /locus_tag="STM1557" /EC_number="2.6.1.-" /note="similar to E. coli enzyme that may degrade or block biosynthesis of endogenous mal inducer, probably aminotrasferase (AAC74694.1); Blastp hit to AAC74694.1 (390 aa), 33% identity in aa 3 - 382" /codon_start=1 /transl_table=11 /product="putative aminotransferase" /protein_id="NP_460516.1" /db_xref="GI:16764901" /db_xref="GeneID:1253075" /translation="MDFNQIINRNNTGSVKWDFIERHFGDGAGKLLPMWVSDFDFACP PEVQAALHQRIEHGVFGYSERDEAYFNALLHWFSSRHQLTLKQEWVCSVEGVVPGLAL LVQMLTHPGDGVVVQGPYYGSFAKIITLNGRKLLENPLSESPDDGYQMDFCQLERLFR HERPPLMILCNPHNPTGRCWSANELEQLLLLCEAYDVTLISDEIWADLLLPGETFTSV LHLGVRWHKRVISATAASKTFGLSSLRISNFLIPDPTLRQRFLSRLDAHGLDVFNALS VQAATTAWNESRQWLDSLLDYLAENRRWFVEHATEHLPWARIVPAQGTYLLWMDCKKL GLDDEQLKWVMADVAGIAPSMGSGFGPAGSGFIRLNLGCPRTYLEMAIDGLKRISVKT IKGIPTGG" gene complement(1636053..1638135) /locus_tag="STM1558" /db_xref="GeneID:1253076" CDS complement(1636053..1638128) /locus_tag="STM1558" /EC_number="3.2.1.-" /note="similar to E. coli part of glycogen operon, a glycosyl hydrolase, debranching enzyme (AAC76456.1); Blastp hit to AAC76456.1 (657 aa), 48% identity in aa 3 - 595" /codon_start=1 /transl_table=11 /product="glycogen debranching enzyme GlgX" /protein_id="NP_460517.1" /db_xref="GI:16764902" /db_xref="GeneID:1253076" /translation="MTTNRAFEIRSGYSHTLGANYDGEGVNFAIFSAHAERVELCLYD PSGEHEIARLELPEYTDEIWHGYVPKLQPGALYGYRVYGPYDPENGHRFNPNKLLIDP YARELVGDIQWNDAHFAYQLLHDDKDLTFDDQDSAPFTPKCRVIDPDEANWEDRQRPS IPWSNAIIYETHVKGFTQLNSAIPEPLRGTFEGMGHKASVDYIKSLGITSVELLPVHW FPDDQHLLDKGLKNFWGYNSLGFFAPATRYYGPKGIQGFRDMVRAFHDAGIEVILDVV YNHTAEGNELGPTLSFKGIDNFSYYRTMPDQHRYYINDTGTGNTVNTSHPRVLQMVMD SLRYWAESMHVDGFRFDLGTILGREPEGFDQRGGFFDAVTQDPVLAKLKLIGEPWDIG PGGYQVGGFPPGWGEWNDKYRDTVREYWKGDNVTNDFAARLLGSGDLYDLRGRRPWSS VNFITAHDGFTLNDLVSYNDKHNEANGEDNNDGHNDNRSCNYGAEGPTDDEGINAIRE RQKRNFLTTLLFSHGTPMLLAGDEFGRSQMGNNNGYCQDSEISWVHWDNLPETANALR EFTRHLIQLRATQPLLRRESWRDGLEIRWFNAGGGAQQSEQWDEGSTIGVCISRPDLQ PEAGIWHDALLLFNPFEGSVPFRIPMWGEGGWVLELTTADNAQQGMRITEEMDFDLAG RSIVLFRRP" regulatory complement(1638130..1638135) /regulatory_class="ribosome_binding_site" /locus_tag="STM1558" /note="putative RBS for STM1558; RegulonDB:STMS1H001763" gene complement(1638185..1640719) /locus_tag="STM1559" /db_xref="GeneID:1253077" CDS complement(1638185..1640713) /locus_tag="STM1559" /note="similar to E. coli trehalase 6-P hydrolase (AAC77196.1); Blastp hit to AAC77196.1 (551 aa), 36% identity in aa 41 - 129, 25% identity in aa 149 - 210, 37% identity in aa 356 - 379" /codon_start=1 /transl_table=11 /product="malto-oligosyltrehalose synthase" /protein_id="NP_460518.1" /db_xref="GI:16764903" /db_xref="GeneID:1253077" /translation="MIPTATYRLQFRNGMTFDRAAALVPYLKNLGISHLYASPIFTAT KASTHGYDVTDANEIEPSIGGREGFERLVAELKAQGLGLIIDIVPNHMASSLENAWWR DVLEYGKESRYARHFDIDWSRRLTLPFLGDTFDAVLENGEIAIKPDPATGKPAFAYYD NYYPLAPATWQGREAEILALTDKAAIADLHERQPWKLMSWRDAARSLSYRRFFEVTGL VGMRVEDKTVFDDTHRLILELVRTGAVDGLRIDHIDGLADPKAYLARLRQEVGPACYI TVEKILAKGEQLPDDWPVSGTTGYEFIASLAEVLVDDEQIDNLRQAYETVKGAPVDMR AELRAAKLLMVDRNFEGEFTRLLALALSIASELQIAQEESVVRQALRELLIAFPVYRT YGTAEGLPPTDICLLHRIVERVKTLETPPQPEALTFLSRLLTGDVPASSQEEATQFRV RFQQLTGPLMAKSVEDTLFFRQNMGLALNEVGAEPVTHHFSIERFHHEMKTRQARQPD ALSGTSTHDTKRGEDARARLYTLTEAPEQWSECLARWRQMNQTHVKFLNDGTAPKSAD TWMLYQALTGVWPPVLQPQDETGLNALKTRFEAFVEKALREAKLRTDWVDSNEAYETA MLDYARYLLAPDNQTFLQDFYRSLQPFIRAGLVNSLTQTVIKLTAPGVPDIYQGSEAL NFSLVDPDNRREPDFATLAQQLDQLTPGVFSREESWLNGQVNQYVTAALLRLRQQNHE LFRFGDYIPLRAVGQRADKVIAYARVNHDDALIVVAPRLVFAECDGLLSQSHSGFWSG TDIIIPGQLNQHRYRNVLTQERLMPGERLSLASHQGGVLVLMSD" gene complement(1640710..1642500) /locus_tag="STM1560" /db_xref="GeneID:1253078" CDS complement(1640710..1642494) /locus_tag="STM1560" /note="similar to E. coli 1,4-alpha-glucan branching enzyme (AAC76457.1); Blastp hit to AAC76457.1 (728 aa), 30% identity in aa 235 - 407, 28% identity in aa 524 - 576" /codon_start=1 /transl_table=11 /product="malto-oligosyltrehalose trehalohydrolase" /protein_id="NP_460519.1" /db_xref="GI:16764904" /db_xref="GeneID:1253078" /translation="MSSKIFCKSWGAEYIAADVVRFRLWATGQQKVMLRLAGKDQEMQ ANGDGWFTLDVAGVTPGTEYNFVLSDGMVVPDPASRAQKTDVNGPSYVVDPGSYTWRN TGWKGSRWEQAVVYEMHTGTFTPEGTFRAAIAKLPYLAELGVTVIEVMPVAQFGGERG WGYDGVLLYAPHSAYGTPDDFKAFIDAAHGYGLSVVLDIVLNHFGPEGNYLPLLAPAF FHKERMTPWGNGIAYDVDAVRRYIIEAPLYWLTEYHLDGLRFDAIDQIEDSSARHVLV EIAQRIREDITDRPIHLTTEDSRNIISLHPRDQDGNAPLFTAEWNDDFHNAVHVFATG ETQAYYNDFADAPEKHLARALAEGFAYQGEISPQTGEPRGVKSTGQPPVAFVDFIQNH DQVGNRAQGDRLITLAGAERTKVLLATLLLSPHIPLLFMGEEYGESRPFLFFTDFHGD LARAVREGRAKEFADHAGENVPDPNAPETFQRSKLNWKQQHSEEGKAWLAFTRELLLL RQKHIVPLLSAARESSGTVLQTAPGFIAVSWRFPGGTLSLALNISATTVLLPDLPGKT LFAWPNESTGSLSQHSLIVRLAQGESAS" regulatory complement(1640714..1640719) /regulatory_class="ribosome_binding_site" /locus_tag="STM1560" /note="putative RBS for STM1559; RegulonDB:STMS1H001764" regulatory complement(1642495..1642500) /regulatory_class="ribosome_binding_site" /locus_tag="STM1560" /note="putative RBS for STM1560; RegulonDB:STMS1H001765" gene complement(1642623..1643414) /locus_tag="STM1561" /db_xref="GeneID:1253079" CDS complement(1642623..1643408) /locus_tag="STM1561" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460520.1" /db_xref="GI:16764905" /db_xref="GeneID:1253079" /translation="MKILPLALFIIPFLAGCGANNTPPQTPIPGEKTSAKLRTLETGA AAIQSRPPVDAISTYLDGFHFYSGDKNGQMEAHHYVTVLNEDVMQAVIYDGNTKNARL MGVEYIISERLFKTLPPEEKKLWHSHQYEVKSGSLVAPGLPQVADKALMSKIVNTYGK TWHTWHTDRDKTLPMGIPALMMGFTGDGQLDPALLADRDRRLGIDTQAIKRERQDLPE HPVVKGANAWEQGEVIQLQRVQGSGEHGRGDTAHFGTSEQSRQ" regulatory complement(1643409..1643414) /regulatory_class="ribosome_binding_site" /locus_tag="STM1561" /note="putative RBS for STM1561; RegulonDB:STMS1H001766" gene complement(1643551..1643894) /locus_tag="STM1562" /db_xref="GeneID:1253080" CDS complement(1643551..1643880) /locus_tag="STM1562" /note="similar to E. coli orf, hypothetical protein (AAC76534.1); Blastp hit to AAC76534.1 (112 aa), 43% identity in aa 5 - 110" /codon_start=1 /transl_table=11 /product="acid-resistance protein" /protein_id="NP_460521.1" /db_xref="GI:16764906" /db_xref="GeneID:1253080" /translation="MNKFSLATAGIIVAALVTSVSVNAATDTTKTNVTPKGMSCQEFV DLNPQTMAPVAFWVLNEDEDFKGGDYVDFQETETTAVPLAVELCKKNPQSELSKIKDE IKKELSK" regulatory complement(1643889..1643894) /regulatory_class="ribosome_binding_site" /locus_tag="STM1562" /note="putative RBS for STM1562; RegulonDB:STMS1H001767" gene complement(1644230..1644674) /gene="osmC" /locus_tag="STM1563" /db_xref="GeneID:1253081" CDS complement(1644230..1644661) /gene="osmC" /locus_tag="STM1563" /note="osmotically inducible; similar to E. coli osmotically inducible protein (AAC74555.1); Blastp hit to AAC74555.1 (143 aa), 92% identity in aa 1 - 143" /codon_start=1 /transl_table=11 /product="OsmC family peroxiredoxin" /protein_id="NP_460522.1" /db_xref="GI:16764907" /db_xref="GeneID:1253081" /translation="MTIHKKGQAHWEGDIKRGKGTVSTESGVLNQQPYGFNTRFEGAQ GTNPEELIGAAHAACFSMALSLMLGEAGFTPTSIDTTADVSLDKVEAGFAITKIALQS KVAVADIDASTFDQIIQKAKAGCPVSQVLNAEITLDYQLNA" regulatory complement(1644669..1644674) /regulatory_class="ribosome_binding_site" /gene="osmC" /locus_tag="STM1563" /note="putative RBS for osmC; RegulonDB:STMS1H001768" gene 1645161..1645389 /gene="yddX" /locus_tag="STM1564" /db_xref="GeneID:1253082" regulatory 1645161..1645166 /regulatory_class="ribosome_binding_site" /gene="yddX" /locus_tag="STM1564" /note="putative RBS for yddX; RegulonDB:STMS1H001769" CDS 1645174..1645389 /gene="yddX" /locus_tag="STM1564" /note="similar to E. coli orf, hypothetical protein (AAC74554.1); Blastp hit to AAC74554.1 (92 aa), 88% identity in aa 22 - 92" /codon_start=1 /transl_table=11 /product="biofilm-dependent modulation protein" /protein_id="NP_460523.1" /db_xref="GI:16764908" /db_xref="GeneID:1253082" /translation="MFTYHSANTSAAQPALVNAIEQGLRAELGVVTEDDILMELTKWV EASDNDILSDIYQQTINYVVSGQHPTL" gene 1645473..1645627 /gene="rpsV" /locus_tag="STM1565" /db_xref="GeneID:1253083" regulatory 1645473..1645478 /regulatory_class="ribosome_binding_site" /gene="rpsV" /locus_tag="STM1565" /note="putative RBS for rpsV; RegulonDB:STMS1H001770" CDS 1645484..1645627 /gene="rpsV" /locus_tag="STM1565" /note="similar to E. coli 30S ribosomal subunit protein S22 (AAC74553.1); Blastp hit to AAC74553.1 (45 aa), 86% identity in aa 1 - 44" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit S22" /protein_id="NP_460524.1" /db_xref="GI:16764909" /db_xref="GeneID:1253083" /translation="MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRAD SQK" gene 1645804..1647501 /gene="sfcA" /locus_tag="STM1566" /db_xref="GeneID:1253084" CDS 1645804..1647501 /gene="sfcA" /locus_tag="STM1566" /EC_number="1.1.1.38" /note="similar to E. coli NAD-linked malate dehydrogenase (malic enzyme) (AAC74552.1); Blastp hit to AAC74552.1 (574 aa), 92% identity in aa 10 - 574" /codon_start=1 /transl_table=11 /product="NAD-dependent malic enzyme" /protein_id="NP_460525.1" /db_xref="GI:16764910" /db_xref="GeneID:1253084" /translation="METTTKKARSLYIPYAGPVLLEFPLLNKGSAFSVEERRNFNLSG LLPEVVESIEEQAERAWLQYQGFKTEIDKHIYLRNIQDTNETLFYRLVQNHLEEMMPV IYTPTVGAACERFSEIYRRARGVFISYPNRHNMDDILQNVPNHNIKVIVVTDGERILG LGDQGIGGMGIPIGKLSLYTACGGISPAYTLPVVLDVGTNNQQLLNDPLYMGWRHPRI TDDEYYAFVDEFIQAVKQRWPDILLQFEDFAQKNAMPLLTRYRDEICSFNDDIQGTAA VTVGTLIAASRAAGSQLSEQKIVFLGAGSAGCGIAEQIIAQTQREGLSEDAARQNVFM VDRFGLLTDRMPNLLPFQAKLVQKCDNLQHWDTENDVLSLLDVVRNVKPDILIGVSGQ TGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFSPVI WKDKVYPIAQCNNAYIFPGIGLGVIASGASRITDEMLMSASETLAKHSPLVNNGEGLV LPALKDIQVVSRAIAFAVGKMAQQQGVAVKTSAEALQQAIDDNFWKPEYRDYRRTSI" gene 1647775..1648797 /gene="adhP" /locus_tag="STM1567" /db_xref="GeneID:1253085" regulatory 1647775..1647780 /regulatory_class="ribosome_binding_site" /gene="adhP" /locus_tag="STM1567" /note="putative RBS for adhP; RegulonDB:STMS1H001771" CDS 1647787..1648797 /gene="adhP" /locus_tag="STM1567" /EC_number="1.1.1.1" /note="propanol preferring; similar to E. coli alcohol dehydrogenase (AAC74551.1); Blastp hit to AAC74551.1 (346 aa), 92% identity in aa 11 - 345" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase AdhP" /protein_id="NP_460526.1" /db_xref="GI:16764911" /db_xref="GeneID:1253085" /translation="MKAAVVTQDHQVDVTEKTLRPLRHGEALLKMECCGVCHTDLHVK NGDFGDKTGVILGHEGIGVVAEVGPGVTSLKPGDRASVAWFYEGCGHCEYCNTGNETL CRNVKNAGYTVDGGMAEECIVVADYAVKVPEGLDSAAASSITCAGVTTYKAVKISHIK PGQWIAIYGLGGLGNLALQYAKNVFNAKVIAIDVNDGQLKLAEEMGADLTINSRTEDA AKIVQEKTGGAHAAVVTAVAKAAFNSAVDAVRAGGRVVAVGLPPEAMNLDIPRLVLDG IQVVGSLVGTRQDLTEAFQFAAEGKVVPKVALRPLEDINVIFKEMEQGQIRGRMVIDF RR" gene complement(1648888..1649557) /gene="fdnI" /locus_tag="STM1568" /db_xref="GeneID:1253086" CDS complement(1648888..1649544) /gene="fdnI" /locus_tag="STM1568" /EC_number="1.2.1.2" /note="nitrate-inducible; similar to E. coli formate dehydrogenase-N, nitrate-inducible, cytochrome B556(Fdn) gamma subunit (AAD13440.1); Blastp hit to AAD13440.1 (217 aa), 98% identity in aa 1 - 217" /codon_start=1 /transl_table=11 /product="formate dehydrogenase subunit gamma" /protein_id="NP_460527.1" /db_xref="GI:16764912" /db_xref="GeneID:1253086" /translation="MSKSKMIVRTKFVDRACHWTVVICFFLVALSGISFFFPTLQWLT QTFGTPQMGRILHPFFGIAIFIALMFMFVRFVHHNIPDKKDIPWLKNIVEVLKGNEHK VADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGI ILMHAILIHMYMAFWVKGSIKGMIEGKVSRRWAKKHHPRWYREIEKAEAKKESEEGIQ " gene complement(1649537..1650432) /gene="fdnH" /locus_tag="STM1569" /db_xref="GeneID:1253087" CDS complement(1649537..1650421) /gene="fdnH" /locus_tag="STM1569" /EC_number="1.2.1.21" /note="nitrate-inducible; similar to E. coli formate dehydrogenase-N, nitrate-inducible, iron-sulfur beta subunit (AAD13439.1); Blastp hit to AAD13439.1 (294 aa), 93% identity in aa 1 - 294" /codon_start=1 /transl_table=11 /product="formate dehydrogenase subunit beta" /protein_id="NP_460528.1" /db_xref="GI:16764913" /db_xref="GeneID:1253087" /translation="MSMETQDIIKRSATNAITPPPQARDYKAEVAKLIDVSSCVGCKA CQVACSEWNDIRDNVGHCVGVYDNPADLSAKSWTVMRFTETEQNGKLEWLIRKDGCMH CEDPGCLKACPSAGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNIPRLNKEDNRVYKC TLCVDRVSVGQEPACVKTCPTGAIHFGTKKEMLELGEQRVEKLKARGFEHAGIYNPQG VGGTHVMYVLHHANQPELYHGLPKDPQIDTSINLWKGALKPLAAAGFIATFAGLIYHY IGIGPNKETDDDEEDHHE" regulatory complement(1649552..1649557) /regulatory_class="ribosome_binding_site" /gene="fdnI" /locus_tag="STM1568" /note="putative RBS for fdnI; RegulonDB:STMS1H001772" regulatory complement(1650427..1650432) /regulatory_class="ribosome_binding_site" /gene="fdnH" /locus_tag="STM1569" /note="putative RBS for fdnH; RegulonDB:STMS1H001773" gene complement(1650435..1653489) /gene="fdnG" /locus_tag="STM1570" /db_xref="GeneID:1253088" CDS complement(1650435..1653482) /gene="fdnG" /locus_tag="STM1570" /EC_number="1.2.1.2" /note="similar to E. coli formate dehydrogenase-N, nitrate-inducible, alpha subunit (AAD13438.1); Blastp hit to AAD13438.1 (1015 aa), 93% identity in aa 1 - 1015; contains selenocysteine tRNA suppressible codon" /codon_start=1 /transl_except=(pos:complement(1652895..1652897),aa:Sec) /transl_table=11 /product="putative molybdopterin oxidoreductases" /protein_id="NP_460529.1" /db_xref="GI:16764914" /db_xref="GeneID:1253088" /translation="MDVSRRQFFKICAGGMAGTTVAALGFTPKMALAQARNYKLLRAK EIRNSCTYCSVGCGLLMYSLGDGAKNAKEAIYHIEGDPDHPVSRGALCPKGAGLLDYV HSEDRLRYPEYRAPGSDKWQRISWDDAFTRIAKLMKADRDANFIEKNEQGVTVNRWLS TGMLCASAASNETGMLTQKFARSLGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWV DIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIR SGTDITFLSGVLLYLIENNKINAEYVKHYTNASLLVRDDFAFDDGLFSGYDAQKRQYD KSSWNYQFDENGYAKRDETLTHPRCVWNLLKQHVSRYTPDVVENICGTPKADFLKVCE VLASTSVPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSN IQGLTDLGLLSTSLPGYLTLPSEKQADLQTYLAANTPKATLADQVNYWGNYPKFFVSL MKSFYGDAAQQENDWGFAWLPKWDQSYDVIKYFNMMDSGKVTGYFCQGFNPVASFPDK NKVVQSLSKLKYLVVIDPLVTETSTFWQNHGESNDVDPTTIQTEVFRLPSTCFAEEDG SIANSGRWLQWHWKGQDAPGEARNDGEILAGIYHRLREMYRAEGGKGAEPLLKMSWNY KQPDEPHSEEVAKENNGYALEDLYDANGTLLARKGQLLSSFALLRDDGTTSSSCWIYT GSWTEQGNQMSRRDNADPSGLGNTLGWAWAWPLNRRVLYNRASADPQGKPWDPKRMLI QWNGAKWTGNDIPDFNNAAPGSGTNPFIMQPEGLGRLFAIDKMAEGPFPEHYEPMETP LGTNPLHPNVVSNPAARLYEEDALRMGKKEQFPYVGTTYRLTEHFHTWTKHALLNAIA QPEQFVEISETLAAAKGIANGDYVKVSSKRGFIRAVAVVTRRLRTLHVNGQQVETVGI PIHWGFEGVARKGYIANTLTPNVGDANSQTPEYKAFLVNIEKA" regulatory complement(1653484..1653489) /regulatory_class="ribosome_binding_site" /gene="fdnG" /locus_tag="STM1570" /note="putative RBS for fdnG; RegulonDB:STMS1H001774" gene 1653807..1654641 /gene="yddG" /locus_tag="STM1571" /db_xref="GeneID:1253089" regulatory 1653807..1653812 /regulatory_class="ribosome_binding_site" /gene="yddG" /locus_tag="STM1571" /note="putative RBS for yddG; RegulonDB:STMS1H001775" CDS 1653817..1654641 /gene="yddG" /locus_tag="STM1571" /note="similar to E. coli orf, hypothetical protein (AAD13437.1); Blastp hit to AAD13437.1 (293 aa), 85% identity in aa 20 - 292" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_460530.3" /db_xref="GI:1109557634" /db_xref="GeneID:1253089" /translation="MVGLIRGVSEGLGPVGGAAMIYSLSGLLLIFTVGLPDIRRFPGR YLIAGSVLFVSYEICLALSLGYAATRHQAIEVGMVNYLWPSLTILFAILFNGQKTNWL IVPGLLIALTGVCWVLGGENGLNPGEIISNVATSPLSYLLAFLGAFIWATYCTVTNKY ARGFNGITVFVLLTAVALWLHYFLTPQPAMIFSLPVIAKLFTAALTLGFAYAAWNVGI LHGNVTIMAVGSYFTPVMSSALAALLLSSPLSFSFWQGAVMVCVGSLLCWLATRRR" gene 1655153..1656254 /gene="nmpC" /locus_tag="STM1572" /db_xref="GeneID:1253090" regulatory 1655153..1655158 /regulatory_class="ribosome_binding_site" /gene="nmpC" /locus_tag="STM1572" /note="putative RBS for nmpC; RegulonDB:STMS1H001776" CDS 1655166..1656254 /gene="nmpC" /locus_tag="STM1572" /note="predicted bacterial porin; outer membrane porin protein PMPD. (SW:OMPD_SALTY)" /codon_start=1 /transl_table=11 /product="phosphoporin PhoE" /protein_id="NP_460531.1" /db_xref="GI:16764916" /db_xref="GeneID:1253090" /translation="MKLKLVAVAVTSLLAAGVVNAAEVYNKDGNKLDLYGKVHAQHYF SDDNGSDGDKTYARLGFKGETQINDQLTGFGQWEYEFKGNRTESQGADKDKTRLAFAG LKFADYGSFDYGRNYGVAYDIGAWTDVLPEFGGDTWTQTDVFMTGRTTGVATYRNTDF FGLVEGLNFAAQYQGKNDRDGAYESNGDGFGLSATYEYEGFGVGAAYAKSDRTNNQVK AASNLNAAGKNAEVWAAGLKYDANNIYLATTYSETLNMTTFGEDAAGDAFIANKTQNF EAVAQYQFDFGLRPSIAYLKSKGKNLGTYGDQDLVEYIDVGATYYFNKNMSTFVDYKI NLLDDSDFTKAAKVSTDNIVAVGLNYQF" gene 1656398..1656778 /locus_tag="STM1573" /db_xref="GeneID:1253091" CDS 1656398..1656778 /locus_tag="STM1573" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460532.3" /db_xref="GI:1109557635" /db_xref="GeneID:1253091" /translation="MLDVYACHCTLCQKWSGGIAMYLEACGQPQLAPLSPEPPYFSSS SRGERYFCSGCGCPLWFRLTDTDRYFIPWTLLELNEVDRRRLILAAEIYTETQPAFWR LTGQYARLSGKEVEEMDSPCQLAH" gene complement(1656803..1658295) /gene="smvA" /locus_tag="STM1574" /db_xref="GeneID:1253092" CDS complement(1656803..1658290) /gene="smvA" /locus_tag="STM1574" /note="methyl viologen resistance protein SMVA. (SW:SMVA_SALTY)" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_460533.1" /db_xref="GI:16764918" /db_xref="GeneID:1253092" /translation="MFRQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELL WIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSHTASWLIATRV LLAIGAAMIVPATLAGIRATFCEEKHRNMALGVWAAVGSGGAAFGPLIGGILLEHFYW GSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHAVMLIIAILLLVYSAKTALKG HLSLWVISFTLLTGALLLGLFIRTQLATSRPMIDMRLFTHRIILSGVVMAMTAMITLV GFELLMAQELQFVHGLSPYEAGVFMLPVMVASGFSGPIAGVLVSRLGLRLVATGGMAL SALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPAEKAAAAGAIE TMAYELGAGLGIAIFGLLLSRSFSASIRLPAGLEAQEIARASSSMGEAVQLANSLPPT QGQAILDAARHAFIWSHSVALSSAGSMLLLLAVGMWFSLAKAQRR" regulatory complement(1658290..1658295) /regulatory_class="ribosome_binding_site" /gene="smvA" /locus_tag="STM1574" /note="putative RBS for smvA; RegulonDB:STMS1H001777" gene 1658402..1658986 /locus_tag="STM1575" /db_xref="GeneID:1253093" regulatory 1658402..1658407 /regulatory_class="ribosome_binding_site" /locus_tag="STM1575" /note="putative RBS for STM1575; RegulonDB:STMS1H001778" CDS 1658408..1658986 /locus_tag="STM1575" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="NP_460534.1" /db_xref="GI:16764919" /db_xref="GeneID:1253093" /translation="MSYLNRDERREVILQAAMRVALAEGFAAMTVRRIASEADVAAGQ VHHHFSSAGELKALAFVHLIRTLLDAGQVPPPATWRARLHAMLGSEDGGFEPYIKLWR EAQILADRDPHIRDAYLLTMQMWHEETVTIIEQGKQAGEFTFTANATDIAWRLIALVC GLDGMYVLGIPEMADPAFKFHLDRMITLELFA" gene 1659191..1660589 /gene="narU" /locus_tag="STM1576" /db_xref="GeneID:1253094" regulatory 1659191..1659196 /regulatory_class="ribosome_binding_site" /gene="narU" /locus_tag="STM1576" /note="putative RBS for narU; RegulonDB:STMS1H001779" CDS 1659201..1660589 /gene="narU" /locus_tag="STM1576" /note="nitrite extrusion protein 2 (nitrite facilitator 2). (SW:NARU_SALTY)" /codon_start=1 /transl_table=11 /product="nitrate/nitrite transporter NarU" /protein_id="NP_460535.1" /db_xref="GI:16764920" /db_xref="GeneID:1253094" /translation="MTRQNENYNRYLLSDWRPENPAFWENKGKGIARRNLWISVSCLL LAFCVWMLFSAVAVNLNKIGFNFTTDQLFLLTALPSLSGAILRVPYSFMVPLFGGRKW TVLSTVILIIPCAWLGFAVQNPATPFGVFMLIALLCGFAGANFASSMGNISFFFPKAR QGSALGINGGLGNLGVSVMQLIAPLVIFLPIFTFLGVQGVPQPDGSLLALTNAAWIWV PLLAVATLAAWFGMNDIGSSKASVASQLPVLKRLHLWLLSLLYLATFGSFIGFSAGFA MLAKTQFPDVNILQLAFFGPFIGALARSAGGVISDKFGGVRVTLINFIFMALFTALLF LTLPGSGAGSFSAFYLVFMGLFLTAGLGSGSTFQMIAVIFRQITLYNVKLRGGSDEQA QREAVTDTAAALGFISAIGAVGGFFIPKAFGTSLALTGSPVGAMKIFLLFYLACVLLT WLVYGRRKPKQQ" gene 1660668..1664421 /gene="narZ" /locus_tag="STM1577" /db_xref="GeneID:1253095" regulatory 1660668..1660673 /regulatory_class="ribosome_binding_site" /gene="narZ" /locus_tag="STM1577" /note="putative RBS for narZ; RegulonDB:STMS1H001780" CDS 1660681..1664421 /gene="narZ" /locus_tag="STM1577" /EC_number="1.7.99.4" /note="similar to E. coli cryptic nitrate reductase 2, alpha subunit (AAC74550.1); Blastp hit to AAC74550.1 (1246 aa), 90% identity in aa 1 - 1246" /codon_start=1 /transl_table=11 /product="nitrate reductase subunit alpha" /protein_id="NP_460536.1" /db_xref="GI:16764921" /db_xref="GeneID:1253095" /translation="MSKLLDRFRYFKQKGDTFADGHGQVMHTNRDWEDSYRQRWQFDK IVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWY LYSANRLKYPLVRKRLIELWREALSRHSDPVLAWESIMNDPQKCQSYKQVRGHGGFIR SNWKELNQLIAAANVWTIKTYGPDRVAGFSPIPAMSMVSYAAGTRYLSLLGGTCLSFY DWYCDLPPASPMTWGEQTDVPESADWYNSAYIIAWGSNVPQTRTPDAHFFTEVRYKGT KTIAITPDYSEVAKLCDQWLAPKQGTDSALAMAMGHVILKEFHLDNPSDYFLNYCRRY TDMPMLVLLDERADGSYVPGRMMRASDLVDGLGEANNPEWKTVALNSTGELVAPNGSI GFRWGEKGKWNLEPVAAGVETELSLSLLGQHDDVAGVAFPYFGGNENPHFRSVRQEPV LVRQLPVKRLALADGSERMVVSVYDLVLANYGLDRGLDDGHSANNYNDVKAYTPAWGE QITGVPRRHIETIAREFAETAHKTHGRSMIILGAGVNHWYHMDMNYRGMINMLVFCGC VGQTGGGWAHYVGQEKLRPQTGWLPLAFALDWNRPPRQMNSTSFFYNHASQWRYEKLT AQELLSPLADPAKFSGHLIDFNVRAERMGWLPSAPQLNLNPLSVKASADKAGLSAADY TVQALKSGAIRFACEQPDSGHNHPRNLFVWRSNLLGSSGKGHEYMLKYLLGTDSGIQG EALGSSEGIKPEEVEWQSTAIEGKLDLLVTLDFRMSSTCLFSDIVLPTATWYEKDDMN TSDMHPFIHPLSAAVDPAWESKSDWEIYKGIASVFSEVCVGHLGQETDVVLHPLQHDS PAELAQPFDILDWRKGECELIPGKTAPNIVVVERDYPATYERFTSLGPLLDKLGNGGK GIAWNTQDEVDFLGKLNYTKHDGPAKGRPRIDTALDASEVILALAPETNGQVAVKAWQ ALGEMTGREHTHLAINKEDEKIRFRDIQAQPRKIISSPTWSGLESEHVSYNAGYTNVH ELIPWRTLSGRQQLYQDHAWMRAFGESLVAYRPPIDTRSVSEMREIPPNGFPEKALNF LTPHQKWGIHSTYSENLLMLTLSRGGPIVWISEADARELGIEDNDWIEAFNANGALTA RAVVSQRVPPGMTMMYHAQERIMNIPGSEVTGMRGGIHNSVTRVCPKPTHMIGGYAQL AYGFNYYGTVGSNRDEFIMIRKMKNINWLDDEGRDQVQEAKK" gene 1664404..1665962 /gene="narY" /locus_tag="STM1578" /db_xref="GeneID:1253096" regulatory 1664404..1664409 /regulatory_class="ribosome_binding_site" /gene="narY" /locus_tag="STM1578" /note="putative RBS for narY; RegulonDB:STMS1H001781" CDS 1664418..1665962 /gene="narY" /locus_tag="STM1578" /EC_number="1.7.99.4" /note="similar to E. coli cryptic nitrate reductase 2, beta subunit (AAC74549.1); Blastp hit to AAC74549.1 (514 aa), 94% identity in aa 1 - 514" /codon_start=1 /transl_table=11 /product="nitrate reductase subunit beta" /protein_id="NP_460537.1" /db_xref="GI:16764922" /db_xref="GeneID:1253096" /translation="MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTGREGMEYAWFNNV ETKPGIGYPKNWEDQQEWQGGWVRDVNGKIRPRLGGKMGVISKIFANPVIPQIDDYYE PFTFDYQHLHNAPESKHQPTARPRSLIDGKRMDKVIWGPNWEELLGGEFEKRARDRNF DNIQKEMYGQFENTFMMYLPRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRG WRLCISGCPYKKIYFNWKSGKSEKCIFCYPRIESGQPTVCSETCVGRIRYLGVLLYDA DRIEEAASTEHETDLYERQCDVFLNPHDPAVIEEALKQGIPQNVIDAAQRSPVYKMAM DWKLALPLHPEYRTLPMVWYVPPLSPIQSYADAGGLPHNGNILPAVETLRIPVQYLAN MLSAGDTGPVIRALKRMMAMRHYMRSQTVEGVTDTRAIEEVGLSIQQVEEMYRYLAIA NYEDRFVIPTSHREMARDAFPERNGCGFTFGDGCHGSDTKFNLFNSSRIDAINITEVR DKAEGE" gene 1665951..1666657 /gene="narW" /locus_tag="STM1579" /db_xref="GeneID:1253097" regulatory 1665951..1665956 /regulatory_class="ribosome_binding_site" /gene="narW" /locus_tag="STM1579" /note="putative RBS for narW; RegulonDB:STMS1H001782" CDS 1665962..1666657 /gene="narW" /locus_tag="STM1579" /EC_number="1.7.99.4" /note="assembly function; similar to E. coli cryptic nitrate reductase 2, delta subunit, assembly function (AAC74548.1); Blastp hit to AAC74548.1 (231 aa), 82% identity in aa 1 - 231" /codon_start=1 /transl_table=11 /product="nitrate reductase molybdenum cofactor assembly chaperone" /protein_id="NP_460538.1" /db_xref="GI:16764923" /db_xref="GeneID:1253097" /translation="MQILKAIGLLMEYPDDELWECRDEALTLIQHDAPMLADFTRELL YAPLLDKQAEWCEVFDRGRATSLLLFEHVHAESRDRGQAMVDLLSQYETVGLHLNCRE LPDHLPLYLEYLSVLPEAEAREGLQNIAPILALLGGRLKQRGAPWYQLFDALLTLAGS TLTSDSVTKQIIQESRDDTRQALDAVWEEEQVKFIEDNATTCDSSPLHHYQRRFSQDA APQYVDVSAGGPK" gene 1666644..1667334 /gene="narV" /locus_tag="STM1580" /db_xref="GeneID:1253098" regulatory 1666644..1666649 /regulatory_class="ribosome_binding_site" /gene="narV" /locus_tag="STM1580" /note="putative RBS for narV; RegulonDB:STMS1H001783" CDS 1666654..1667334 /gene="narV" /locus_tag="STM1580" /EC_number="1.7.99.4" /note="similar to E. coli cryptic nitrate reductase 2, gamma subunit (AAC74547.1); Blastp hit to AAC74547.1 (226 aa), 96% identity in aa 1 - 226" /codon_start=1 /transl_table=11 /product="respiratory nitrate reductase subunit gamma" /protein_id="NP_460539.1" /db_xref="GI:16764924" /db_xref="GeneID:1253098" /translation="MIQYLNVFFYDIYPYICATVFFLGSWLRYDYGQYTWRASSSQML DKRGMVIWSNLFHIGILGIFFGHLFGMLTPHWMYAWFLPIAVKQQMAMILGGVCGVLT LIGGAGLLWRRLTNQRVRATSTTPDIIIMSILLIQCLLGLSTIPFSAQYPDGSEMMKL VGWAQSIVTFRGGSSEMLSGVAFVFRVHLVLGMTIFLLFPFTRLVHVWSAPFEYFTRR YQIVRTRR" gene 1667427..1668333 /gene="yddE" /locus_tag="STM1581" /db_xref="GeneID:1253099" regulatory 1667427..1667432 /regulatory_class="ribosome_binding_site" /gene="yddE" /locus_tag="STM1581" /note="putative RBS for yddE; RegulonDB:STMS1H001784" CDS 1667440..1668333 /gene="yddE" /locus_tag="STM1581" /note="hypothetical protein in nhoA 5'region. (SW:YDDE_SALTY)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460540.1" /db_xref="GI:16764925" /db_xref="GeneID:1253099" /translation="MKPQIYHVDAFTGDPFRGNSAGVVLHADTLSDAQMQLIARELRH SETAFLLKSEESDVRIRYFTPTVEVPICGHATVAAHYVRATVLGLGNTTVWQTSLAGR HRVEIHAEHNDYRITLEQGQPSFEPPLVGEIRAAIITALNLTEDDIVPGAPIQVASTG HAKVMILLKPDVDIDALSPNLAALTAISQQIGCNGFFPFQIRPGKNETDGRMFSPAIG IVEDPVTGNANGPMGAWLVHHGLMAHDGKTLQIQGHQGRALGKEGTVDVTVTIRDNQP ENVTISGQAVILFHAEWAITF" gene complement(1668369..1669227) /gene="nhoA" /locus_tag="STM1582" /db_xref="GeneID:1253100" CDS complement(1668369..1669214) /gene="nhoA" /locus_tag="STM1582" /EC_number="2.3.1.118" /note="N-hydroxyarylamine O-acetyltransferase. (SW:NHOA_SALTY)" /codon_start=1 /transl_table=11 /product="N-hydroxyarylamine O-acetyltransferase" /protein_id="NP_460541.1" /db_xref="GI:16764926" /db_xref="GeneID:1253100" /translation="MTSFLHAYFTRLHCQPLGVPTVEALRTLHLAHNCAIPFENLDVL LPREIQLDETALEEKLLYARRGGYCFELNGLFERALRDIGFNVRSLLGRVILSHPASL PPRTHRLLLVDVEDEQWIADVGFGGQTLTAPLRLQAEIAQQTPHGEYRLMQEGSTWIL QFRHHEHWQSMYCFDLGVQQQSDHVMGNFWSAHWPQSHFRHHLLMCRHLPDGGKLTLT NFHFTRYHQGHAVEQVNVPDVPSLYQLLQQQFGLGVNDVKHGFTEAELAAVMAAFDTH PEAGK" regulatory complement(1669222..1669227) /regulatory_class="ribosome_binding_site" /gene="nhoA" /locus_tag="STM1582" /note="putative RBS for nhoA; RegulonDB:STMS1H001785" gene complement(1669498..1670137) /locus_tag="STM1583" /db_xref="GeneID:1253101" CDS complement(1669498..1670130) /locus_tag="STM1583" /codon_start=1 /transl_table=11 /product="effector protein steA" /protein_id="NP_460542.1" /db_xref="GI:16764927" /db_xref="GeneID:1253101" /translation="MPYTSVSTYARALSGNKLPHVAAGDYENKLSTKIMKGILYVLTA GLAYGFTRVIEHYCNVTPKVAEFCANAGNIHNHLADAVRDGLFTIDVELSDGRMLTFE QLSLIAEGKPIVRISDGEHTVEVEGTFEEICMRLEEGFFEAPAYYDYDIDEKYKTVRE RMAAYNALPQALGAIPCLEYYIARASNMQEAKAQWAADIKARYHNYLDNY" regulatory complement(1670132..1670137) /regulatory_class="ribosome_binding_site" /locus_tag="STM1583" /note="putative RBS for STM1583; RegulonDB:STMS1H001786" gene 1670632..1672136 /gene="ansP" /locus_tag="STM1584" /db_xref="GeneID:1253102" regulatory 1670632..1670637 /regulatory_class="ribosome_binding_site" /gene="ansP" /locus_tag="STM1584" /note="putative RBS for ansP; RegulonDB:STMS1H001787" CDS 1670643..1672136 /gene="ansP" /locus_tag="STM1584" /note="L-asparagine permease (L-asparagine transport protein). (SW:ANSP_SALTY)" /codon_start=1 /transl_table=11 /product="amino acid permease" /protein_id="NP_460543.1" /db_xref="GI:16764928" /db_xref="GeneID:1253102" /translation="MKTQTTHAAEQHAAKRRWLNAHEEGYHKAMGNRQVQMIAIGGAI GTGLFLGAGARLQMAGPALALVYLICGIFSFFILRALGELVLHRPSSGSFVSYAREFL GEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGDVPQWVFALGALTIVGTMNM IGVKWFAEMEFWFALIKVLAIVIFLVVGTIFLGTGQPLEGNATGFHLITDNGGFFPHG LLPALVLIQGVVFAFASIELVGTAAGECKDPQKMVPKAINSVIWRIGLFYVGSVVLLV LLLPWNAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMS MGGSAPKFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIAS WAFIMVCQMRLRQAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYPNGTYT IASLPLIAILLVAGWFGVRRRVAEIHRTAPVTADSTESVVLKEEAAT" gene complement(1672213..1672441) /locus_tag="STM1585" /db_xref="GeneID:1253103" CDS complement(1672213..1672434) /locus_tag="STM1585" /note="similar to E. coli orf, hypothetical protein (AAC75872.1); Blastp hit to AAC75872.1 (72 aa), 48% identity in aa 1 - 71" /codon_start=1 /transl_table=11 /product="DUF903 domain-containing protein" /protein_id="NP_460544.1" /db_xref="GI:16764929" /db_xref="GeneID:1253103" /translation="MKKLFICSGLGMMFFMLAGCTTNYVMTTKNGQTIVTQGKPQLDK ETGMTSYTDQEGNQREINSNDVAQLIKAD" regulatory complement(1672436..1672441) /regulatory_class="ribosome_binding_site" /locus_tag="STM1585" /note="putative RBS for STM1585; RegulonDB:STMS1H001788" gene complement(1672579..1673652) /locus_tag="STM1586" /db_xref="GeneID:1253104" CDS complement(1672579..1673640) /locus_tag="STM1586" /note="similar to E. coli putative receptor (AAC74534.1); Blastp hit to AAC74534.1 (353 aa), 89% identity in aa 1 - 353" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460545.1" /db_xref="GI:16764930" /db_xref="GeneID:1253104" /translation="MHLRHLFSPRLRGSLLLGSLLVASSFSTLAAEDMLRKAVGKGAY EMAWSQQENALWLATSQSRKLDKGGVVYRLDPVTLEITQAIHNDLKPFGATINAATQT LWFGNTINSAVTAIDAKTGDVKGRLVLDARKRTEEVRPLQPRELVADAATNTIYISGV GKESAIWVVDGETIKLKTTIENTGKMSTGLALDSKAQRLYTTNADGEFITIDTASNKI LSRKKLLDDGKEHFFINLSLDTAGHRAFITDSKATEVLVVDTRNGNILAKIAAPASLA VLFNPTRNEAYVTHRQAGQVSVIDAKTYNVVKTFDTPTYPNSLALSADGKTLYVSVKQ KSTREQEATQPDDVIRIAL" regulatory complement(1673647..1673652) /regulatory_class="ribosome_binding_site" /locus_tag="STM1586" /note="putative RBS for STM1586; RegulonDB:STMS1H001789" gene 1673893..1676024 /gene="yncD" /locus_tag="STM1587" /db_xref="GeneID:1253105" regulatory 1673893..1673898 /regulatory_class="ribosome_binding_site" /gene="yncD" /locus_tag="STM1587" /note="putative RBS for yncD; RegulonDB:STMS1H001790" CDS 1673904..1676024 /gene="yncD" /locus_tag="STM1587" /note="similar to E. coli putative outer membrane receptor for iron transport (AAC74533.1); Blastp hit to AAC74533.1 (700 aa), 84% identity in aa 1 - 700" /codon_start=1 /transl_table=11 /product="TonB-dependent receptor" /protein_id="NP_460546.1" /db_xref="GI:16764931" /db_xref="GeneID:1253105" /translation="MKIISVRQRLYPALLLPLTFSPVLQAASAPNEQTMIVTATPQTV SELDTPAAVSVIEGEDMRLATPRVNLSESLTSVPGLQVQNRQNYAQDLQISIRGFGSR SAFGVRGIRLYVDGIPATMPDGQGQISNIDINSIQDVEVLRGPFSALYGNASGGVINV TTETGRQPPTLEASSYYGSYGSWRYGLKATGAMGDGTQPGDVYYTVSTTRFTTHGYRD HSGARKNLANAKLGVRLDDVSKLSLIFNSVDIKADDPGGLTESEWKADPQQAPRAEQY NTRKTIKQTQAGLRYERQLSAQDDISVMAYAGERETTQYQSIPLVAQLKPAQAGGVIT LQRHYQGIDSRWTHRGELGVPVTFTGGVNYENMSENRKGYNNFRLNNGTPEFGHKGDL RRDERNLMWNVDPYLQTQWQLTQKLSLDAGVRYSSVWFDSNDHYIAPGNGDDSGDASY HHWLPAGSLKYALTDAWNLYLAAGRGFETPTINELSYRADGQSGFNFDLKPSTNDTVE VGSKTRIGNGLLTAALFQTDTDDEIVVASSMGGRTTYKNAGKTRRQGAELALDQRFAG DWRVKASWTWLDATYRSNVCQGQNCDGNRMPGIARNMGFASLGFIPDEGWYAGTDVRY MGDIMANDENTAKAPSYTVVGLNTGYKFNYSQLTVDIFGRVDNLFDKEYIGSVIVNES NGRYYEPAPGRNYGVGINLAWQFE" gene complement(1676091..1676773) /gene="yncC" /locus_tag="STM1588" /db_xref="GeneID:1253106" CDS complement(1676091..1676756) /gene="yncC" /locus_tag="STM1588" /note="similar to E. coli orf, hypothetical protein (AAC74532.1); Blastp hit to AAC74532.1 (240 aa), 58% identity in aa 20 - 238" /codon_start=1 /transl_table=11 /product="colanic acid/biofilm transcriptional regulator" /protein_id="NP_460547.1" /db_xref="GI:16764932" /db_xref="GeneID:1253106" /translation="MPGTEKTQHISLTTQVENRLKHQLSIGALKPGARLITKNIAQEL GVSITPVREALLRLVSSSALAVAPAQAFMVPEISLESLLEINTIRTALEEMAVVAAAG KITPDREQTLNALLDEFQQALESGVMEKILLANRAFRFEIYHYADMPTLYAMIEQLWV RLGPSLHFLYDNFKLDDYQNGVNLYRKLLNALVTGDKEASRHCLQNVLQQNVATIKNQ YFM" regulatory complement(1676768..1676773) /regulatory_class="ribosome_binding_site" /gene="yncC" /locus_tag="STM1588" /note="putative RBS for yncC; RegulonDB:STMS1H001791" gene complement(1677090..1678160) /gene="yncB" /locus_tag="STM1589" /db_xref="GeneID:1253107" CDS complement(1677090..1678160) /gene="yncB" /locus_tag="STM1589" /note="similar to E. coli putative oxidoreductase (AAC74531.1); Blastp hit to AAC74531.1 (376 aa), 85% identity in aa 28 - 375" /codon_start=1 /transl_table=11 /product="putative NADP-dependent oxidoreductase" /protein_id="NP_460548.1" /db_xref="GI:16764933" /db_xref="GeneID:1253107" /translation="MMDYARHEENRMKQQTNRNRRWVLASRPHGAPQMDNFRLEEDDV ATPGEGQVLLRTVFLSLDPYMRGRMSDEPSYAPPVEPGCVMVGGTVSRVVASNHPDYR PDEWVLSYNGWQDYDISDGEGLVKLGDNPQHPSWSLGILGMPGFTAYMGLLDIGQPKE GETLVVAAATGPVGATVGQIGKLKGCRVVGIAGGAEKCRHATDVLGFDLCLDHHADNF PQQLAQACPQGIDIYYENVGGKVFDAVLPLLNTSARIPLCGLVSGYNATALPDGPDRL PLLMATLLKKRIRLQGFIINQDYGHRIHEFQQEMGRWIKEGKIHYREQITDGLENAPE AFMGLLAGKNFGKVVIRLADDA" gene 1678327..1678854 /gene="yncA" /locus_tag="STM1590" /db_xref="GeneID:1253108" regulatory 1678327..1678332 /regulatory_class="ribosome_binding_site" /gene="yncA" /locus_tag="STM1590" /note="putative RBS for yncA; RegulonDB:STMS1H001792" CDS 1678339..1678854 /gene="yncA" /locus_tag="STM1590" /EC_number="2.3.1.-" /note="similar to E. coli putative resistance protein (AAC74530.1); Blastp hit to AAC74530.1 (172 aa), 87% identity in aa 1 - 170" /codon_start=1 /transl_table=11 /product="GNAT family N-acetyltransferase" /protein_id="NP_460549.1" /db_xref="GI:16764934" /db_xref="GeneID:1253108" /translation="MTIRFADKADCAAITEIYNHAVLHTAAIWNDRTVDTDNRLAWYE ARQLLGYPVLVSEENGVVTGYASFGDWRSFDGFRYTVEHSVYVHPAHQGKGLGRKLLS RLIDEARRCGKHVMVAGIESQNAASIRLHHSLGFTVTAQMPQVGVKFGRWLDLTFMQL QLDEHAAPDAC" gene 1678840..1679303 /gene="ydcZ" /locus_tag="STM1591" /db_xref="GeneID:1253109" regulatory 1678840..1678845 /regulatory_class="ribosome_binding_site" /gene="ydcZ" /locus_tag="STM1591" /note="putative RBS for ydcZ; RegulonDB:STMS1H001793" CDS 1678854..1679303 /gene="ydcZ" /locus_tag="STM1591" /note="similar to E. coli orf, hypothetical protein (AAC74529.1); Blastp hit to AAC74529.1 (149 aa), 86% identity in aa 1 - 149" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460550.1" /db_xref="GI:16764935" /db_xref="GeneID:1253109" /translation="MNQSLTLIFLIAAGVGLVVQNSIMVRITQTSSTILIAMLLNSLV GIVLFVTILWFKQGATGFGELVASVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAV LVASQLIGGLALDIARSHGVTLRAMVGPAFGALLLVIGAWLIAKRQF" gene complement(1679308..1679552) /gene="ydcY" /locus_tag="STM1592" /db_xref="GeneID:1253110" CDS complement(1679308..1679541) /gene="ydcY" /locus_tag="STM1592" /note="similar to E. coli orf, hypothetical protein (AAC74528.1); Blastp hit to AAC74528.1 (77 aa), 85% identity in aa 1 - 77" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460551.1" /db_xref="GI:16764936" /db_xref="GeneID:1253110" /translation="MSHLEEVSARVDAAIAESVIAHMNELLIALSDDAELRREDRYVQ QQRLRTAIAHHGRQYQEDRDARREQLTKGGTIL" regulatory complement(1679547..1679552) /regulatory_class="ribosome_binding_site" /gene="ydcY" /locus_tag="STM1592" /note="putative RBS for ydcY; RegulonDB:STMS1H001794" gene 1679760..1681084 /gene="srfA" /locus_tag="STM1593" /db_xref="GeneID:1253111" regulatory 1679760..1679765 /regulatory_class="ribosome_binding_site" /gene="srfA" /locus_tag="STM1593" /note="putative RBS for srfA; RegulonDB:STMS1H001795" CDS 1679765..1681084 /gene="srfA" /locus_tag="STM1593" /note="SrfA (gi|8347258)" /codon_start=1 /transl_table=11 /product="ssrAB-activated protein" /protein_id="NP_460552.1" /db_xref="GI:16764937" /db_xref="GeneID:1253111" /translation="MAKSLLRSGNLDDYQAVGGGGQAVFESALQIRETLRLRKQQAMV DCLAIPQLNDNGDRVDWYSPIEGQAIAWKAADEETRSRALRYLASTFESAAALSRKSL QSGKTALQLFGSLLEKATQFPGENHVFLVNGKPVITFWGFVNLNENTRDDVLDCLRVT EAIPDIPLVEPEPEEKPLVEAAFSQADEPLLTSVIEPPKMPEEPAAPPVIVSEPKPAA PIPVAEAKRARRLPLWSLPVAAVVIAAVATPFFWPSSSVDGASPVRAAPVATAKTDVT PLPELTAHLPLHRAEVTPAPKAAPLPEAPVIIAAIPKDALVMDNTQMKLGTTRFLNGS WRISVDVKDPITGKPPSLRYQIQNNKGIARVVHGDNVVCRAEIFSGLHQTGELMIKSR GNARCTDGSRYPMPEITCKAGVNDVATCTARYGDHAAIPLTFKKIGA" gene 1681083..1684070 /gene="srfB" /locus_tag="STM1594" /db_xref="GeneID:1253112" regulatory 1681083..1681088 /regulatory_class="ribosome_binding_site" /gene="srfB" /locus_tag="STM1594" /note="putative RBS for srfB; RegulonDB:STMS1H001796" CDS 1681089..1684070 /gene="srfB" /locus_tag="STM1594" /note="SrfB (gi|8347259)" /codon_start=1 /transl_table=11 /product="virulence factor SrfB" /protein_id="NP_460553.1" /db_xref="GI:16764938" /db_xref="GeneID:1253112" /translation="MLVNLCDYKQSVTLIANSGVQFLDFGLTPQESAHYGRFVRKTAN GPLLRLDFDLTSGRYTLPGRAGGQPEVVKPESTQTLHYSLDVLDGIWLPLPFLRFNPP RTFIDGPDNWARIQVRKLSEPDSAGNTHRITLAFDSQLAKNMPAALAPCENDLLNGTR FALAWRDEEVADFLDQTWIDGWLRESFLQYASQVENRSEQAIQQALRSFEYQAHWLNL LTLLGEQLTVPEVKFVTHTLSTPAIPVDLILDVGNTHTCGVLIEDHGDANDGLRQTAE LQVRSLSEPQYLNDPLFTSRVEFSEARFGKQHFSVESGRDDAFVWPSIVRVGDEARAL AMQRVGTEGSSGISSPRRYLWDETPALQDWRFSQIHGKTQREPLATAFPLMNLMNDDG QPLFRLPYEERLPVFSPQYSRSTLMTHMLCEILAQALGQINSVATRLRLGFPASPRQL RTLILTLPSAMPKQEREIFRQRMFEALALVWKAMGWHPQDEDFTTPKQREKSVVPVPE IQMEWDEASCGQLVWLYNEAISHYAGRTESFFNALARPDRQPEPGVVPGRALRVASID IGGGTTDMAIVHYQLDDGVGANVKITPHLLFREGFKVAGDDLLLDIIQRCVLPSLQTA LQRAGVTDAAALLATLFGDSGRIDTQAILRQQTALQLFMPLGHAVLSAWEQSDINDPF AGLHATFGDLLIRRPTSNVMNYIQQAIDHALPSGSPTFDIFNVPLQIQFSQLQESLLA GQFTLTTPLHAVCEAISHYHCDILLVTGRPTCLPGVQALIRHLQPVPVNRIVWMDKYQ VHEWYPFSQQGRIGNPKSTAAVGAMLCSLALDLRLPRFNFKAADIGAYSTVRYLGVLD NTVNTLRDENIWYHEIDLDKPGATLDARLHFPLRGNVTLGFRQLANSRWPATPLYCLS INSAELAKTIAGDGVLNVRLKLRGSSKDSAPESFILSDAWLQDGTPVAADALTLKLNT LADRRHSGSHYWIDSGSVYLK" gene 1684062..1686211 /gene="srfC" /locus_tag="STM1595" /db_xref="GeneID:1253113" regulatory 1684062..1684067 /regulatory_class="ribosome_binding_site" /gene="srfC" /locus_tag="STM1595" /note="putative RBS for srfC; RegulonDB:STMS1H001797" CDS 1684067..1686211 /gene="srfC" /locus_tag="STM1595" /note="predicted coiled-coil structure; SrfC (gi|8347260)" /codon_start=1 /transl_table=11 /product="virulence factor SrfC" /protein_id="NP_460554.1" /db_xref="GI:16764939" /db_xref="GeneID:1253113" /translation="MTKPLNTTQAVIEWVNNTRRYATRLDDEADALLAQLTLAAADES ALNAACASHGCVGLYGYAQSAKAHLLTTLCGNENGKLEIITPDRDYDYFSHINPGHAP ANMAIRFTRDIFSNESGWPLRLRLISEAELVQIFIAWTSSSPVCRQVEKSIITSRLEK WQSLRQPQPVPGVTAEEVATIASFWRSCLPSARQHIDDATWQHFASLLPALDLTTRAH AWALLWGEQPEITQQWLALAHMLQQTGHAGELAAPLSLLVDHFGLPAENFLTQMALTA NDTQSDVVVHPVKEGRLLNAVSLSLDSLALLTRELVLSVENNVLDNVDLLDIPVAPDS HPHPLWRAKLGWMLAHYRQQVQPDVLVICNALASRSQTSTAAHHLLEWVNATQPQHES ALPGVVWAITPQDARFATQQNLDEAVQQLMGKPGVHWGTLQALDKHSMQRLVEWLSQA TSAPQRQARLQALREQLRGRVRDLLPMFDDARLPVETVIRRLQAQAARHGDLLAGLLP PVQNFEALLSTRQSREEQVCGLFNDAIDLFADEPTRASASEGHETGYQAHKMWINHLR QWAHCRDNAQRLGLEPQMLNAVAEILITASYRLGLPQQLQKTMQREEVSGAQLHAIIG NFIAWLGYANIEEAQRPASRVQKGAAIFAATPRSTMLRLTKLDEQPVHAASRYVYDWL VALYTLANENAGYRHPQDVTDVDRAQLIALIA" gene complement(1686256..1686528) /gene="ydcX" /locus_tag="STM1596" /db_xref="GeneID:1253114" CDS complement(1686256..1686519) /gene="ydcX" /locus_tag="STM1596" /note="similar to E. coli orf, hypothetical protein (AAC74527.1); Blastp hit to AAC74527.1 (82 aa), 72% identity in aa 4 - 82" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460555.1" /db_xref="GI:16764940" /db_xref="GeneID:1253114" /translation="MLLRLINLDVRQIKRAYCARFFLWLAWMPDMTLFQKILIFYAVM AVISSLITWFLTHDKKRIRFLSAFLVGATWPISFPVALLFSLF" regulatory complement(1686523..1686528) /regulatory_class="ribosome_binding_site" /gene="ydcX" /locus_tag="STM1596" /note="putative RBS for ydcX; RegulonDB:STMS1H001798" gene complement(1686828..1688287) /gene="ydcW" /locus_tag="STM1597" /db_xref="GeneID:1253115" CDS complement(1686828..1688273) /gene="ydcW" /locus_tag="STM1597" /EC_number="1.2.1.8" /note="similar to E. coli putative aldehyde dehydrogenase (AAC74526.1); Blastp hit to AAC74526.1 (474 aa), 83% identity in aa 1 - 474" /codon_start=1 /transl_table=11 /product="putative aldehyde dehydrogenase" /protein_id="NP_460556.3" /db_xref="GI:1109557636" /db_xref="GeneID:1253115" /translation="MTIWENAMQYQLLINGVLVDGEGERQSVYNPATGEVILEIAEAS PAQVDAAVQAADNAFAEWGQTTPKARAECLLKLADSIEQNALEFARLESQNCGKPLHC VINDEIPAIVDVFRFFAGAARCLSGLAAGEYLEGHTSMIRRDPIGVVASIAPWNYPLM MAAWKLAPALAAGNCVVIKPSEITPLTALKLAVLAKDIFPPGVLNVLFGRGQTVGDVL TGHEKVRMVSLTGSIATGEHILRHTAPAIKRTHMELGGKAPVIVFDDADLDAVAQGVR TFGFYNAGQDCTAACRIYAQRGIYDALVEKLGNAVSSLKMGAPEDESTELGPLSSLAH LKRVTAAVEEAKALSHIRVITGGSQTEGKGYYFAPTLLADAKQEDAIVQREVFGPVVS ITVFDDEDQVLRWANDSRYGLASSVWTQDVGRAHRLSARLQYGCTWINTHFMLVSEMP HGGQKQSGYGKDMSLYGLEDYTLVRHIMVKH" regulatory complement(1688282..1688287) /regulatory_class="ribosome_binding_site" /gene="ydcW" /locus_tag="STM1597" /note="putative RBS for ydcW; RegulonDB:STMS1H001799" gene complement(1688388..1689812) /gene="ydcR" /locus_tag="STM1598" /db_xref="GeneID:1253116" CDS complement(1688388..1689812) /gene="ydcR" /locus_tag="STM1598" /note="similar to E. coli multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport system (AAC74521.1); Blastp hit to AAC74521.1 (468 aa), 87% identity in aa 1 - 468" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="NP_460557.1" /db_xref="GI:16764942" /db_xref="GeneID:1253116" /translation="MKKYQRLAEQIREQIASGVWQPGDRLPSLREQVASSGMSFMTVG HAYQLLESQGRIIARPQSGYYVAPHPVCRSVATAAHVIRDEAVDINTYIFEMLQASRD TSVVPFASAFPDPRLFPLPQLNRSLAQVSKTATAMSVIENLPPGNAELRYAIARRYAQ QGITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCFYGALQALERLRLKALSI PTDVKEGIDLMALEQALQEYPVKACWLMTNSQNPLGFTLSAEKKARLVALLTHHNVTL IEDDVYSELYFGREKPLPAKAWDRDDTVLHCSSFSKCLVPGFRIGWVAGGSHARQIQR LQLMSTLSTSSPMQLALVDYLSTRRYDAHLRRLRRQLAERKQQAWQTLLRHLPAEVKI HHNDSGYFLWLELPEQLDAGELSAKALEHLISIAPGKMFSTSGAWTRFFRFNTAWHWG EREEQAVKQLGSLIREMLSAKSLV" gene complement(1689948..1690725) /gene="pdgL" /locus_tag="STM1599" /db_xref="GeneID:1253117" CDS complement(1689948..1690718) /gene="pdgL" /locus_tag="STM1599" /note="D-ala-D-ala digestion in peptidoglycan; D-alanyl-D-alanine dipeptidase PcgL precursor (gi|4585342)" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine dipeptidase" /protein_id="NP_460558.1" /db_xref="GI:16764943" /db_xref="GeneID:1253117" /translation="MVKCVSSFLLFSLLSVQAMSAENHIDLHQPKDFVDITTVAPDVQ VDMRYFSSHNFIGRPIKGYNAPVCLLTRPAANAVKQVADRLRPFGLTLKIYDCYRPQS AVNDFIAWAKDPSQNQMKNEFYPQVEKNRLFEEGYLAARSGHSRGSTLDLTIVPLDSK IPIYDPGRPLVNCTASAAQRSPDNSLDFGTGFDCFSPLSHPDNVILTAQQRANRLLLQ TLMRDAGFTPLDTEWWHFSLTHEPYPNTWFDFPVKQRP" regulatory complement(1690720..1690725) /regulatory_class="ribosome_binding_site" /gene="pdgL" /locus_tag="STM1599" /note="putative RBS for pdgL; RegulonDB:STMS1H001800" gene complement(1690977..1691211) /locus_tag="STM1600" /db_xref="GeneID:1253118" CDS complement(1690977..1691207) /locus_tag="STM1600" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_448018.1" /db_xref="GI:1109557637" /db_xref="GeneID:1253118" /translation="MAMTSRPNYLGSRGILCVCTTAVNRNFSALSPTIDVFLTNCLPD YIVVLSLAKQCYLVMEGDNNCTTDYQMTFLVR" regulatory complement(1691206..1691211) /regulatory_class="ribosome_binding_site" /locus_tag="STM1600" /note="putative RBS for STM1600; RegulonDB:STMS1H001801" gene complement(1691240..1691646) /gene="ugtL" /locus_tag="STM1601" /db_xref="GeneID:1253119" CDS complement(1691240..1691638) /gene="ugtL" /locus_tag="STM1601" /note="homology with chitinase from Schizosaccharomyces; putative membrane protein UgtL (gi|4585341)" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine dipeptidase" /protein_id="NP_460560.1" /db_xref="GI:16764945" /db_xref="GeneID:1253119" /translation="MKKSDGEIHEKTASWGILQSEWLRKCGRLLLLLLYRFVIGWAFF QLLAMIVAGIFLLGILLFHPIIFVQTIAITEKLNHASLDLWHILKLCLWHYGIIAGFI FMAECTLSKSIRQVQRLSKKFGAQDVSSRP" regulatory complement(1691641..1691646) /regulatory_class="ribosome_binding_site" /gene="ugtL" /locus_tag="STM1601" /note="putative RBS for ugtL; RegulonDB:STMS1H001802" gene 1692171..1693125 /gene="sifB" /locus_tag="STM1602" /db_xref="GeneID:1253120" regulatory 1692171..1692176 /regulatory_class="ribosome_binding_site" /gene="sifB" /locus_tag="STM1602" /note="putative RBS for sifB; RegulonDB:STMS1H001803" CDS 1692175..1693125 /gene="sifB" /locus_tag="STM1602" /note="secreted effector SifB (gi|8927437)" /codon_start=1 /transl_table=11 /product="effector protein SifB" /protein_id="NP_460561.1" /db_xref="GI:16764946" /db_xref="GeneID:1253120" /translation="MPITIGRGFLKSEMFSQSAISQRSFFTLLWEKIKDFFCDTQRST ADQYIKELCDVASPPDAQRLFDLFCKLYELSSPSCRGNFHFQHYKDAECQYTNLCIKD GEDIPLCIMIRQDHYYYEIMNRTVLCVDTQSAHLKRYSDINIKASTYVCEPLCCLFPE RLQLSLSGGITFSVDLKNIEETLIAMAEKGNLCDWKEQERKAAISSRINLGIAQAGVT AIDDAIKNKIAAKVIENTNLKNAAFEPNYAQSSVTQIVYSCLFKNEILMNMLEESSSH GLLCLNELTEYVALQVHNSLFSEDLSSLVETTKNEAHHQS" gene 1693388..1693629 /gene="yncJ" /locus_tag="STM1603" /db_xref="GeneID:1253121" regulatory 1693388..1693393 /regulatory_class="ribosome_binding_site" /gene="yncJ" /locus_tag="STM1603" /note="putative RBS for yncJ; RegulonDB:STMS1H001804" CDS 1693399..1693629 /gene="yncJ" /locus_tag="STM1603" /note="similar to E. coli orf, hypothetical protein (AAC74518.1); Blastp hit to AAC74518.1 (76 aa), 76% identity in aa 1 - 73" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460562.1" /db_xref="GI:16764947" /db_xref="GeneID:1253121" /translation="MLTKTLSVVLLTCALFSGQLLAKQQDHAFVWFATGGHQLRHEAD SDELRAAAEESAEGLREHHNWQKSRKPESYFR" gene complement(1693630..1695612) /gene="ydcP" /locus_tag="STM1604" /db_xref="GeneID:1253122" CDS complement(1693630..1695594) /gene="ydcP" /locus_tag="STM1604" /EC_number="3.4.-.-" /note="similar to E. coli putative collagenase (AAC74517.1); Blastp hit to AAC74517.1 (667 aa), 92% identity in aa 20 - 667" /codon_start=1 /transl_table=11 /product="protease" /protein_id="NP_460563.1" /db_xref="GI:16764948" /db_xref="GeneID:1253122" /translation="MRQQPHYLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNA SNSLRDIADLVPFAHRYGARIFVTLNTILHDDELEPAQRLITDLYNTGVDALIVQDMG ILELDIPPIELHASTQCDIRSVEKAKFLADVGFSQIVLARELNLSQIAAIHQATDATI EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLS MKDNDQTANLGALIDAGVRSFKIEGRYKDMSYVKNITAHYRQMLDAIIEQRGDLARAS VGRTEHFFVPSTEKTFHRGSTDYFVNARKGDIGAFDSPKFIGLPVGEVLNVAKDYLDV EATEPLANGDGLNVLIKREVVGFRANTVEKTGHNRYRVWPNDMPADLHKVRPHHPLNR NLDHNWQQALTKTSSERRVAVDIMLGGWQEQLILTLTSEDGVCITHTLDGVFEEANNS EKALNNLKAGLAKLGQTPYYARDMQVTLPAALFVPNSLLNQFRREAIDMLDAARLAHY QRGRRKPVAQPAPVYPQTHLSFLANVYNHKAREFYHRYGVQLIDAAYEAHQEKGEVPV MITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVHGDEVLTLKFDCRPCEMHVIGKIKN HILKMPQPGSVVASVSPEALMKTLPKRRGV" regulatory complement(1695607..1695612) /regulatory_class="ribosome_binding_site" /gene="ydcP" /locus_tag="STM1604" /note="putative RBS for ydcP; RegulonDB:STMS1H001805" gene complement(1695673..1696220) /gene="ydcN" /locus_tag="STM1605" /db_xref="GeneID:1253123" CDS complement(1695673..1696209) /gene="ydcN" /locus_tag="STM1605" /note="similar to E. coli orf, hypothetical protein (AAC74516.1); Blastp hit to AAC74516.1 (178 aa), 72% identity in aa 1 - 177" /codon_start=1 /transl_table=11 /product="XRE family transcriptional regulator" /protein_id="NP_460564.1" /db_xref="GI:16764949" /db_xref="GeneID:1253123" /translation="MDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNE SSPTVATLWKIATGLNVPFSVFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYF SLLLAPGTVSESTPHKAGVIEHVVVIQGRLDMCTGGVWQTIDAGKGLRFAGDTAHTYR NSSDQTVHFHSLIHYPRD" regulatory complement(1696215..1696220) /regulatory_class="ribosome_binding_site" /gene="ydcN" /locus_tag="STM1605" /note="putative RBS for ydcN; RegulonDB:STMS1H001806" gene 1696291..1697478 /locus_tag="STM1606" /db_xref="GeneID:1253124" regulatory 1696291..1696296 /regulatory_class="ribosome_binding_site" /locus_tag="STM1606" /note="putative RBS for STM1606; RegulonDB:STMS1H001807" CDS 1696300..1697478 /locus_tag="STM1606" /note="similar to E. coli putative membrane transport protein (AAC74515.1); Blastp hit to AAC74515.1 (478 aa), 76% identity in aa 88 - 469" /codon_start=1 /transl_table=11 /product="benzoate transporter" /protein_id="NP_460565.1" /db_xref="GI:16764950" /db_xref="GeneID:1253124" /translation="MRLLSLPLPTVLSGLVAVLVGYASSAAIIWQAALAAGATPAEIA GWMTALGIAMGISTLTLTLWYRAPVLTAWSTPGAALLVTGLQGLSLPDAVGIFIVANA LIVLCGVTGLFARLMRIIPHSLAAAMLAGILLRFGLQAFGTLNGEFVMCGGMLLAWLL FKVFAPRYAVIAAMVMGITVALIQGKVAMSGIHFAPVWPTFVPPHFSFAQSLSVAVPL FLVTMASQNAPGVATMKASGYQLPVSPLMIFTGLLALLLSPFGVYSICIAAITAAICQ SPDAHPDPTRRWLAAAAAGVFYLLAGWFGGSITALMVALPVSWVQMLAGLALLSTISG SLYQALTHESERDAAVIAFLVTASGLTLMGIGSAFWGLIAGGIGYAVLTRTRRPSLSG " gene complement(1697532..1698213) /locus_tag="STM1607" /db_xref="GeneID:1253125" CDS complement(1697532..1698200) /locus_tag="STM1607" /note="similar to E. coli orf, hypothetical protein (AAC74513.1); Blastp hit to AAC74513.1 (222 aa), 84% identity in aa 1 - 222" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460566.1" /db_xref="GI:16764951" /db_xref="GeneID:1253125" /translation="MRTHTLFKVAVLTGLLALSGCASKVTQPDKYSGFLKNYSDLQET TSATGKPVLRWVDPHFNDSNYDSIVYNPITYYPVPKPTTQVGQQVLDKLLAYTNTKVK SAIEQRKPLVTTPGPRSLIFRGAITGVDTSKEGLQFYEVIPVALIVAGTQMATGHRTM DTHLYFEGELIDAATNKPVVKVVRQGEGKDLSNSSTPMAFETLKQVVDDMATDTSMFD VNKK" regulatory complement(1698208..1698213) /regulatory_class="ribosome_binding_site" /locus_tag="STM1607" /note="putative RBS for STM1607; RegulonDB:STMS1H001808" gene complement(1698356..1698962) /gene="tehB" /locus_tag="STM1608" /db_xref="GeneID:1253126" CDS complement(1698356..1698952) /gene="tehB" /locus_tag="STM1608" /note="tellurite resistance; similar to E. coli tellurite resistance (AAC74512.1); Blastp hit to AAC74512.1 (197 aa), 84% identity in aa 1 - 196" /codon_start=1 /transl_table=11 /product="tellurite resistance methyltransferase TehB" /protein_id="NP_460567.1" /db_xref="GI:16764952" /db_xref="GeneID:1253126" /translation="MTVRDENYFTEKYGLTRTHSDVLAAAKVVAPGRTLDLGCGNGRN SLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILST VVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEGELRRYY EGWDMLKYNEDVGELHRTDENGNRIKLRFATMLARKTA" gene complement(1698939..1699952) /gene="tehA" /locus_tag="STM1609" /db_xref="GeneID:1253127" CDS complement(1698939..1699952) /gene="tehA" /locus_tag="STM1609" /note="TDT family; similar to E. coli tellurite resistance (AAC74511.1); Blastp hit to AAC74511.1 (330 aa), 88% identity in aa 2 - 329" /codon_start=1 /transl_table=11 /product="dicarboxylate transporter/tellurite-resistance protein TehA" /protein_id="NP_460568.1" /db_xref="GI:16764953" /db_xref="GeneID:1253127" /translation="MRNHKQSDRVLNLPAGYFGIVLGTIGMGFAWRYASQIWGISHWP GDIMVILAMIIWALLTLAFLSRLVRFPHSVMAEVRHPVMSSFVSLFPATTMLVAIGFV PWYRPLAVALFSVGVVIQLAYAAWQTAGLWRGAHPEEATTPGLYLPTVANNFISAMAC GALGYNDAGLVFLGAGVFSWLSLEPVILQRLRSCGELPAVLRTSLGIQLAPALVACSA WLSVNGGEGDTLAKMLFGYGLLQLLFMLRLMPWYLSQPFNASFWSFSFGVSALATTGL HLGHGSESGLFHILAVPLFIFTNAIIALLLVRTFLLLVQGTLLIRTERAALLKTEEKN DRS" regulatory complement(1698957..1698962) /regulatory_class="ribosome_binding_site" /gene="tehB" /locus_tag="STM1608" /note="putative RBS for tehB; RegulonDB:STMS1H001809" gene 1700046..1701039 /gene="ydcK" /locus_tag="STM1610" /db_xref="GeneID:1253128" regulatory 1700046..1700051 /regulatory_class="ribosome_binding_site" /gene="ydcK" /locus_tag="STM1610" /note="putative RBS for ydcK; RegulonDB:STMS1H001810" CDS 1700059..1701039 /gene="ydcK" /locus_tag="STM1610" /note="involved in lipopolysaccharide biosynthesis; similar to E. coli orf, hypothetical protein (AAC74510.1); Blastp hit to AAC74510.1 (326 aa), 66% identity in aa 1 - 326" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460569.1" /db_xref="GI:16764954" /db_xref="GeneID:1253128" /translation="MTKYRLSEEPRAFTYQVDGEKKSVLLRQVIAVTDFNDVKAGTSG GWVDAGNVLSQQGDCWIYDENAMAFAGTEITGNARITQPCSLYNNVRIGDNVWIDRSD ISDGARISDNVTIQSSSVRGECAIYGDARVLNQSEILAVQGLTHEHAQILQIYDRATV NHSRIVHQVQLYGDATITLAFIEHRAEVFDFALIEGNKDNNVWICDCAKVYGHARVIA GTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEIRGGPILLDDRVLIEGQAC IQGEILIEHQVEISGRATVIAFDGNTIHLRGPKVINGEDRITRTPLVGSL" gene complement(1701036..1701587) /gene="rimL" /locus_tag="STM1611" /db_xref="GeneID:1253129" CDS complement(1701036..1701575) /gene="rimL" /locus_tag="STM1611" /EC_number="2.3.1.-" /note="modifies N-terminal serine of 50S ribosomal subunit protein L7/L12; similar to E. coli acetylation of N-terminal serine of 30S ribosomal subunit protein L7; acetyl transferase (AAC74509.1); Blastp hit to AAC74509.1 (179 aa), 67% identity in aa 1 - 178" /codon_start=1 /transl_table=11 /product="ribosomal protein L7/L12-serine acetyltransferase" /protein_id="NP_460570.1" /db_xref="GI:16764955" /db_xref="GeneID:1253129" /translation="MVEIIPVSTTLELRAADESHVPALHQLVLKNKAWLQQSLDWPQY VTSQEETRKHVQGNILLHQRGYAKMYLIFCQNEMAGVLSFNAIEPINKAAYIGYWLDE SFQGQGIMSQSLQALMTHYARRGDIRRFVIKCRVDNQASNAVARRNHFTLEGCMKQAE YLNGDYHDVNMYARIIDAD" regulatory complement(1701582..1701587) /regulatory_class="ribosome_binding_site" /gene="rimL" /locus_tag="STM1611" /note="putative RBS for rimL; RegulonDB:STMS1H001811" gene 1701780..1702910 /locus_tag="STM1612" /db_xref="GeneID:1253130" regulatory 1701780..1701785 /regulatory_class="ribosome_binding_site" /locus_tag="STM1612" /note="putative RBS for STM1612; RegulonDB:STMS1H001812" CDS 1701792..1702910 /locus_tag="STM1612" /note="similar to E. coli putative lyase/synthase (AAC77261.1); Blastp hit to AAC77261.1 (383 aa), 84% identity in aa 11 - 382" /codon_start=1 /transl_table=11 /product="aminopeptidase" /protein_id="NP_460571.1" /db_xref="GI:16764956" /db_xref="GeneID:1253130" /translation="MTFSVQETLFSLLRLNGISGHENSIANVMQHAFEQQAKDVWRDR LGNVVARYGSDKPDALRLMIFAHMDEVGFMVRKIEPSGFLRFERVGGPAQITMPGSIV TLAGRSGDIMGCIGIKAYHFAKGDERTQPPALDKLWIDIGAKDKADAERMGIQVGTPV TLYNPPHCLGNDLVCSKALDDRLGCTALLGVAEALASTPLDIAVFLVASVQEEFNIRG IIPVLRRVRPDLAIGIDITPSCDTPDLQDYSDVRVNHGVGITCLNYHGRGTLAGLITP PRLLRMLETTAHENNIPVQREVAPGVITETGYIQVELDGIPCASLSIPCRYTHSPAEV ASLRDLADCIRLLTALANMSPEQFPIEPETGATQEARP" gene 1702901..1703188 /locus_tag="STM1613" /db_xref="GeneID:1253131" regulatory 1702901..1702906 /regulatory_class="ribosome_binding_site" /locus_tag="STM1613" /note="putative RBS for STM1613; RegulonDB:STMS1H001813" CDS 1702907..1703188 /locus_tag="STM1613" /note="similar to E. coli galactitol-specific enzyme IIB of phosphotransferase system (AAC75154.1); Blastp hit to AAC75154.1 (94 aa), 34% identity in aa 1 - 92" /codon_start=1 /transl_table=11 /product="PTS sugar transporter subunit IIB" /protein_id="NP_460572.1" /db_xref="GI:16764957" /db_xref="GeneID:1253131" /translation="MMKKILVACGTGMSTSTMIAQKLQDFLAEQGIAATTAQCCLNEI PLNCNGMDLIVTSMRTHSDYGIPTLNGAALLTGINDDALKQEIKALLTQ" gene 1703188..1704512 /locus_tag="STM1614" /db_xref="GeneID:1253132" regulatory 1703188..1703193 /regulatory_class="ribosome_binding_site" /locus_tag="STM1614" /note="putative RBS for STM1614; RegulonDB:STMS1H001814" CDS 1703199..1704512 /locus_tag="STM1614" /note="similar to E. coli putative PTS system enzyme IIC component (AAC77260.1); Blastp hit to AAC77260.1 (437 aa), 94% identity in aa 1 - 437" /codon_start=1 /transl_table=11 /product="PTS sugar transporter subunit IIC" /protein_id="NP_460573.1" /db_xref="GI:16764958" /db_xref="GeneID:1253132" /translation="MFDYILSLGGTVFVPIIMIIIGLIFRIPWLQAVKAGVTVGIGFV GMGLVIVMAIDSLSPPIKVMIERFGLTLHVFDVGAGPASGVGYATAIGAMIIPVIFLL NVGMLVTRLTKTMNVDIYNYWHYAITGTVVQLMTGSLIYGVLGAICHAALSLKMADWT AKRVQNIVGLEGISIPQGYGSSSVPLFVLLDAIYEKIPFMKGRNIDAQEIQKRYGMVG DPVIIGVVLGLIFGLAAGEGFKGCATLMITVAAIMVLFPRMIRLIVEGLMPISDGARK FFQKHFKGREVFIGLDTAVTLGHPTTIAVGLLLIPIMLILASILPGNKVLPLADLPVA PFFICMATVIHRGDLIRTLLSGIIVMITVLLIATQFAPYFTDMALKGGFSFAAENAQI TALSVGNMFGWSISELMSLGMIGVVIVVGIVASIILVLRKRELPE" gene 1704511..1705332 /locus_tag="STM1615" /db_xref="GeneID:1253133" regulatory 1704511..1704516 /regulatory_class="ribosome_binding_site" /locus_tag="STM1615" /note="putative RBS for STM1615; RegulonDB:STMS1H001815" CDS 1704526..1705332 /locus_tag="STM1615" /note="similar to E. coli putative nucleoside triphosphatase (AAC77259.1); Blastp hit to AAC77259.1 (268 aa), 92% identity in aa 1 - 268" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460574.1" /db_xref="GI:16764959" /db_xref="GeneID:1253133" /translation="MSWLKEVIGTEKAVIAMCHLRALPGDPGFDTRKGMNWVIDRAHD DLMALQNGGVDAVMFSNEFSLPYLTKVRPETTAAMARIIGQLMSEIRVPFGVNVLWDP VASFDLAMATDAKFIREIFTGAYASDFGVWDTNVGETIRHQHRIGAGHVKTLFNIVPE AAVYLGNRDVCSIAKSTVFNNNPDALCVSGLTAGARTDSAILKRVKETVPDTVVLANT GVCLENVEEQLCIADGCVTATTFKKDGVFANFVDQARVAKFMEKVRHIRQ" gene 1705448..1705901 /locus_tag="STM1616" /db_xref="GeneID:1253134" regulatory 1705448..1705453 /regulatory_class="ribosome_binding_site" /locus_tag="STM1616" /note="putative RBS for STM1616; RegulonDB:STMS1H001816" CDS 1705464..1705901 /locus_tag="STM1616" /EC_number="2.7.1.191" /note="similar to E. coli putative PTS system enzyme II A component (AAC77258.1); Blastp hit to AAC77258.1 (143 aa), 73% identity in aa 1 - 139" /codon_start=1 /transl_table=11 /product="PTS sugar transporter subunit IIA" /protein_id="NP_460575.1" /db_xref="GI:16764960" /db_xref="GeneID:1253134" /translation="MINDVKWVQAQRHASDWRHALDIAVRPLITFGAAAPCYLDGIIE NTLKWGPYYLIAPGIALPHARPEQGANHNQISVTTLSTPVAFGNADCDPIWLLLCASA TDAEAHIRTIQRISQWLDSPESVAMLQDAPNDAALFAQLTALR" gene 1705901..1706545 /locus_tag="STM1617" /db_xref="GeneID:1253135" regulatory 1705901..1705906 /regulatory_class="ribosome_binding_site" /locus_tag="STM1617" /note="putative RBS for STM1617; RegulonDB:STMS1H001817" CDS 1705913..1706545 /locus_tag="STM1617" /EC_number="5.1.3.-" /note="similar to E. coli putative epimerase (AAC77257.1); Blastp hit to AAC77257.1 (210 aa), 65% identity in aa 1 - 210" /codon_start=1 /transl_table=11 /product="epimerase" /protein_id="NP_460576.1" /db_xref="GI:16764961" /db_xref="GeneID:1253135" /translation="MILHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNIT FGMKTIQAVAQYTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQNPPEILADI RAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQGREH FPAAECWADGGITLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQFTAL" gene 1706545..1707352 /locus_tag="STM1618" /db_xref="GeneID:1253136" regulatory 1706545..1706550 /regulatory_class="ribosome_binding_site" /locus_tag="STM1618" /note="putative RBS for STM1618; RegulonDB:STMS1H001818" CDS 1706561..1707352 /locus_tag="STM1618" /note="similar to E. coli putative DEOR-type transcriptional regulator (AAC77256.1); Blastp hit to AAC77256.1 (260 aa), 89% identity in aa 1 - 255" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_460577.1" /db_xref="GI:16764962" /db_xref="GeneID:1253136" /translation="MSQQRPDRIKQMLHYLWQHRHLSTQQAIELFGYAEATVRRDFHY IASRYPGMVRGHGCIDFDDSTEDKEYVFDVKRTLQSEAKREIAALARTFIKDGDCFFL DSGSTCLELAKCLVDAKVKVICNDIKIANELGGFPHVESYIIGGLIRPGYFSVGESLA LEMINAFAVERAFISCDALSIETGITNATMFEVGVKTRIIQRSREVILMADHSKFDTV EPHAVATLSCITTILSDSALPSAIARRYQQAGCRLIMSDPSSGAR" gene 1707344..1707789 /locus_tag="STM1619" /db_xref="GeneID:1253137" regulatory 1707344..1707349 /regulatory_class="ribosome_binding_site" /locus_tag="STM1619" /note="putative RBS for STM1619; RegulonDB:STMS1H001819" CDS 1707352..1707789 /locus_tag="STM1619" /codon_start=1 /transl_table=11 /product="aminoglycoside 6'-acetyltransferase" /protein_id="NP_460578.1" /db_xref="GI:16764963" /db_xref="GeneID:1253137" /translation="MDIRQMNRTHLDHWRGLRKQLWPGHPDDAHLADGEEILQADHLA SFIAMADGVAIGFADASIRHDYVNGCDSSPVVFLEGIFVLPSFRQRGVAKQLIAAVQR WGTNKGCREMASDTSPENTISQKVHQALGFEETERVIFYRKRC" gene complement(1707836..1709043) /locus_tag="STM1620" /db_xref="GeneID:1253138" CDS complement(1707836..1709038) /locus_tag="STM1620" /note="similar to E. coli L-lactate dehydrogenase (AAC76629.1); Blastp hit to AAC76629.1 (396 aa), 38% identity in aa 212 - 384, 33% identity in aa 22 - 175" /codon_start=1 /transl_table=11 /product="lactate oxidase" /protein_id="NP_460579.1" /db_xref="GI:16764964" /db_xref="GeneID:1253138" /translation="MKTHHLIRVVASLAMLATSGLAYAEEYKASTDEKAIKMTNVASL EARVQAKMEKGAFGYIRGGAEDENNLRSNTESFDKKYIMPRVLQGIELKEIDLSTQLL GIPLKTPIIQAPMAAQGLAHASGELATAKGMAQVGSIFSLSTYGNKTIEEVANVSGKN PFFFQLYMSKNNQFNEFILAQAVKHGAKAIILTVDSPVGGYREEDIKNNFQFPLGFAN LEMFARKNDDGSKTGKGAGISEIYAQAKQAFTPEDIAYVHRISGLPVIVKGIQSPEDA EIAIQAGAAGIWVSNHGGRQLDSGPSSFDMLPAIAKVVNKRVPVIFDSGVRRGSHIFK ALASGADIVAVGRPVLYGLNLGGAQGVASVIEQLNKELTINMMLGGARNIEQVKTTRL LTEKDLPQ" regulatory complement(1709038..1709043) /regulatory_class="ribosome_binding_site" /locus_tag="STM1620" /note="putative RBS for STM1620; RegulonDB:STMS1H001820" gene complement(1709050..1709625) /locus_tag="STM1621" /db_xref="GeneID:1253139" CDS complement(1709050..1709625) /locus_tag="STM1621" /note="similar to E. coli orf, hypothetical protein (AAC74140.1); Blastp hit to AAC74140.1 (191 aa), 33% identity in aa 1 - 190" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460580.1" /db_xref="GI:16764965" /db_xref="GeneID:1253139" /translation="MNIMKKSFLGALLSLGLLSAAHADVYKFDNTHTNAVFNIDHFQT STNHGGFYAISGELKYQPEKQVAEMRVTIPVSALNTGVDAFDNHIRSSDILDAEKYPE MVFKSTKWHFEDNKPVSIDGLLTMKGVTKPVTLTTTKFGCYMSPIFKAQVCGGDFVTQ IDRTQWGIDYLVDMGMTKVVDIKIQAEAVKQ" gene complement(1709821..1711494) /gene="ydcG" /locus_tag="STM1622" /db_xref="GeneID:1253140" CDS complement(1709821..1711476) /gene="ydcG" /locus_tag="STM1622" /note="similar to E. coli putative glycoprotein (AAC74506.1); Blastp hit to AAC74506.1 (551 aa), 89% identity in aa 1 - 550" /codon_start=1 /transl_table=11 /product="glucan biosynthesis protein D" /protein_id="NP_460581.1" /db_xref="GI:16764966" /db_xref="GeneID:1253140" /translation="MNRRRFIKGSMAMAAVCGSSGIASLFSQAAFAAESDIADGKIVR FDFAGLQSMAQALAKKPWGGAPGPLPDTLANLTPQAYNSIQYDAAHSLWNGVANRQLD IQFFHVGMGFRRRVRMFSVDTTTHLAREIHFRPELFKYNDAGVDTTQLEGQSDLGFAG FRVFKAPELARRDVVSFLGASYFRAVDDTYQYGLSARGLAIDTYTDGQEEFPDFTAFW FDTAKPGDTTFTVYALLDSASVTGAYKFVIHCEKSQVIMDVENHLYARKDIKQLGIAP MTSMFSCGNNERRVCDTIHPQIHDSDRLAMWRGNGEWICRPLNNPQKLQFNAYMDDNP KGFGLLQLDRDFSHYQDVMGWYNKRPSLWVEPRNKWGKGAVSLMEIPTTGETLDNVVC FWQPEKAIKAGDTLAFNYRLYWSAQPPVQSPLARVMATRTGMGGFPEGWAPGEHYPDK WARRFAIDFVGGDLKAAAPKGIEPVITLSSGEAKQIEILYVEPFDGYRIQFDWYPTSD STAPVDMRMFLRCQGEAISETWLYQYFPPAPDKRRYVDDRIMR" regulatory complement(1711489..1711494) /regulatory_class="ribosome_binding_site" /gene="ydcG" /locus_tag="STM1622" /note="putative RBS for ydcG; RegulonDB:STMS1H001821" gene complement(1711696..1713211) /locus_tag="STM1623" /db_xref="GeneID:1253141" CDS complement(1711696..1713204) /locus_tag="STM1623" /codon_start=1 /transl_table=11 /product="putative carboxylesterase" /protein_id="NP_460582.1" /db_xref="GI:16764967" /db_xref="GeneID:1253141" /translation="MLNPSIPLVETRHGKIVGVVQEEIHIWRGIPYAAPPTGELRWRA PQPVTPWHDVRQADCFSCASWQDITWCRELGGGDPGNFSEDCLYLNVWAPAVRHEPLP VMVWLHGGGYTIGAGSLPPYDGQALAKRGAIVVTVNYRLGHLGFFAHPALEGEEAECI HNFALLDQIAALRWVQDNIAAFGGDTQNVTLFGESAGARSVLSLMASPLAKGLFHKAI IQSGYTLPDTPREVALKKGVALAEHLGLAHATAEQLRALPAETFWPLDAPFKIAPTPI SGDVVLPHPMLETFFAAKQHPIPVMIGSNSDEASVLAVFGVDIAGQIQKMRRERRVGL GLIRLLYPGVKGDEALGRQVCRDMVFTTLGYVVMQAQQRIGEPCWRYWFDYVAEAEHN TYANGACHGNEIPYVFDTLTRAEPTCHYVNENDLAFASQVADYWVNFARHASRTRDVL HGPVRWPASIRGRDRLLRIGLNKLAGFKVENRFMRARLALFKRVMKHHVSLE" regulatory complement(1713206..1713211) /regulatory_class="ribosome_binding_site" /locus_tag="STM1623" /note="putative RBS for STM1623; RegulonDB:STMS1H001822" gene complement(1713253..1714612) /locus_tag="STM1624" /db_xref="GeneID:1253142" CDS complement(1713253..1714596) /locus_tag="STM1624" /note="similar to E. coli orf, hypothetical protein (AAC74505.1); Blastp hit to AAC74505.1 (447 aa), 87% identity in aa 1 - 447" /codon_start=1 /transl_table=11 /product="DUF1338 domain-containing protein" /protein_id="NP_460583.1" /db_xref="GI:16764968" /db_xref="GeneID:1253142" /translation="MANTITADEIREHFSQAMSAMYQQEVPQYGTLLELVADVNLAVL ENNPKLHEQLANADELARLNVERHGAIRVGTAEELSTLRRIFAIMGMYPVSYYDLSQA GVPVHSTAFRPIDEASLSRNPFRMFTSLLRLELIENAALRQRAAEILSQRDIFTSRCR QLLDEYDEQGGFSAAQAEEFVRETLETFRWHRQATVDEETYRSLHREHRLIADVVCFP GCHINHLTPRTLDIDRVQAMMPECGITPKILIEGPPRREVPILLRQTSFKALEEQVLF VDEKQGTHTARFGEIEQRGVALTPKGRRLYDELLHKAGTGKDNFTHQLHLREVFNAFP DSEFLLRQQGLAWFRYRLTPSGEAHRQAIHPGDDPQPLIERGWVIAQPITYEDFLPVS AAGIFQSNLGDETLARSHGNASRDAFEQALGCAVRDEFSLYQEAEERSKRRCGLL" regulatory complement(1714607..1714612) /regulatory_class="ribosome_binding_site" /locus_tag="STM1624" /note="putative RBS for STM1624; RegulonDB:STMS1H001823" gene 1714889..1715812 /gene="ydcI" /locus_tag="STM1625" /db_xref="GeneID:1253143" CDS 1714889..1715812 /gene="ydcI" /locus_tag="STM1625" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC74504.1); Blastp hit to AAC74504.1 (354 aa), 83% identity in aa 48 - 353" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_460584.1" /db_xref="GI:16764969" /db_xref="GeneID:1253143" /translation="MEKNGLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSK TLNELEQLTGTRLFERGRLGAQLTVPGEQFLTHAVKVLDALNTAGQALNRKEDASADV VRVGALPTAALGILPAAIGRFHQQQKSTSLQVATMNNTMLLAGLKSGEIDLGIGRMSD PELMGGLNYELLFLESLKLVVRPGHPLLQETITLSRVMEWPVVVSPKGTVPRQNAEAL LQSQGCKMPAGCIETLSASLSRQLTVDYDYVWFVPSGAVKEDLRQATLVSLPVPTQSA GEPIGILTRVDIPLSTGAQMLIAAIRKSMPL" gene complement(1715873..1717504) /gene="trg" /locus_tag="STM1626" /db_xref="GeneID:1253144" CDS complement(1715873..1717498) /gene="trg" /locus_tag="STM1626" /note="ribose and galactose sensor receptor; similar to E. coli methyl-accepting chemotaxis protein III, ribose sensor receptor (AAC74503.1); Blastp hit to AAC74503.1 (546 aa), 79% identity in aa 6 - 526" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein" /protein_id="NP_460585.2" /db_xref="GI:1109557638" /db_xref="GeneID:1253144" /translation="MGNTFSMQASHKLGFLHHIRLVPLFSSILGGILLLFALSAGLAG YFLLQADRDQRDVTDEIQVRMGLSNSANHLRTARINMIHAGAASRIAEMDEMKANIAA AETRIKQSQDGFNAYMSRAVKTPADDALDNELNARYTAYINGLQPMLKFAKNGMFEAI INHENEQAKQLDAAYNHVLLKAIELRTERARLLSEQAYQRTRLGMMFMIGAFTLALVL TLMTFMVLRRTVIQPLQQSASRIERIAAGDLTMADEPTGRSEIGRLSHHLQQMQHALQ QTVGAVRQGAEEIYRGTSEITAGNTDLSSRTEQQAAAIEQTAASMEQLTATVKQNADN AHHASKLAEDASGKASRGGQMVSGVVQTMGNISTSSKKISEITAVINSIAFQTNILAL NAAVEAARAGEQGRGFAVVASEVRTLASRSAQAAKEIEGLIGASVSLIEQGSEEVIAA GSTMNEIVDAVKRVTDIMLDIAAASDEQSRGIVQVSQAISEMDRVTQQNASLVEEASA AAASLEEQAARLTQAVDAFRLHDTGATMRSSFL" regulatory complement(1717499..1717504) /regulatory_class="ribosome_binding_site" /gene="trg" /locus_tag="STM1626" /note="putative RBS for trg; RegulonDB:STMS1H001824" gene complement(1717667..1718798) /locus_tag="STM1627" /db_xref="GeneID:1253145" CDS complement(1717667..1718785) /locus_tag="STM1627" /EC_number="1.1.1.1" /EC_number="1.1.1.284" /note="similar to E. coli alcohol dehydrogenase class III; formaldehyde dehydrogenase, glutathione-dependent (AAC73459.1); Blastp hit to AAC73459.1 (369 aa), 80% identity in aa 1 - 369" /codon_start=1 /transl_table=11 /product="S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase" /protein_id="NP_460586.1" /db_xref="GI:16764971" /db_xref="GeneID:1253145" /translation="MKSRAAVAFGPGQPLKIVEIDVAPPKKGEVLVKITHTGVCHTDA FTLSGDDPEGVFPAVLGHEGGGVVVEVGEGVTSLKPGDHVIPLYTAECGECKFCKSGK TNLCQAVRATQGKGLMPDGTTRFSYNGEPVYHYMGTSTFSEYTVCAEISLAKVNPQAP LDKVCLLGCGVTTGIGAVHNTAKVKAGDTVAVFGLGGIGLAVIQGAVQAKAGRILAVD TNPEKFTLAGEMGATDFINPNDYDKPIQDVIVELTDGGVDFSFECIGNVNVMRAALEC CHKGWGESIIIGVAGAGQEIKTRPFQLVTGRVWRGSAFGGVKGRTQLPGMVEDAMNGK IRLDPFITHRLPLEQINDAFELMHQGKSIRTVIHFGDN" regulatory complement(1718793..1718798) /regulatory_class="ribosome_binding_site" /locus_tag="STM1627" /note="putative RBS for STM1627; RegulonDB:STMS1H001825" gene complement(1718817..1719103) /locus_tag="STM1628" /db_xref="GeneID:1253146" CDS complement(1718817..1719092) /locus_tag="STM1628" /note="similar to E. coli putative alpha helix chain (AAC73460.1); Blastp hit to AAC73460.1 (98 aa), 52% identity in aa 8 - 98" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460587.1" /db_xref="GI:16764972" /db_xref="GeneID:1253146" /translation="MPHSPEDKKRILTRVRRIRGQVEALERALESGEPCLAILQQIAA VRGASNGLMSEMVEIHLKDELVSGETTPDQRAVRMAEIGHLLRAYLK" regulatory complement(1719098..1719103) /regulatory_class="ribosome_binding_site" /locus_tag="STM1628" /note="putative RBS for STM1628; RegulonDB:STMS1H001826" gene 1719608..1720016 /locus_tag="STM1629" /db_xref="GeneID:1253147" regulatory 1719608..1719613 /regulatory_class="ribosome_binding_site" /locus_tag="STM1629" /note="putative RBS for STM1629; RegulonDB:STMS1H001827" CDS 1719615..1720016 /locus_tag="STM1629" /codon_start=1 /transl_table=11 /product="putative dipicolinate reductase" /protein_id="NP_448047.1" /db_xref="GI:1109557639" /db_xref="GeneID:1253147" /translation="MPISICKHGAPFVVQHENRYGSGASQSSSLSKSIRHISNSHEEI KFISCYSANGACFSNAQMLANASGRPVIGYYGKINKLTASLDNSGRIFRPQHKLAANI CYVGNRLLSAPVQLGFGLKHLLTCHSNGNVR" gene complement(1720145..1720861) /locus_tag="STM1630" /db_xref="GeneID:1253148" CDS complement(1720145..1720861) /locus_tag="STM1630" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460589.1" /db_xref="GI:16764974" /db_xref="GeneID:1253148" /translation="MNDDSIIKNSSMLLAYLGGLGWGSAYFYGWGVSAYYGFPWWYVG VGPDNIARSLFHAISLMAIFIIAWGVGILLFFLVKQKARIHDISFLRLFLAAVLFFIP IVIEFSLLTESFLWELFFIILLVALCLSVGMRFYSKLMPVICFTQLSWVRRHCFTIVM LGFIIYFFIFSFFVGIYKPQLKKEYEMILYDGGWYYVLARYHDSFILSKSFTKNNNRF IIFRPEDGHSYEITLVKVRL" gene 1721280..1722513 /gene="sseJ" /locus_tag="STM1631" /db_xref="GeneID:1253149" regulatory 1721280..1721285 /regulatory_class="ribosome_binding_site" /gene="sseJ" /locus_tag="STM1631" /note="putative RBS for sseJ; RegulonDB:STMS1H001828" CDS 1721287..1722513 /gene="sseJ" /locus_tag="STM1631" /note="regulated by SPI-2; secreted effector J SseJ (gi|9931614)" /codon_start=1 /transl_table=11 /product="pathogenicity island 2 effector protein SseJ" /protein_id="NP_460590.1" /db_xref="GI:16764975" /db_xref="GeneID:1253149" /translation="MPLSVGQGYFTSSISSEKFNAIKESARLPELSLWEKIKAYFFTT HHAEALECIFNLYHHQELNLTPVQVRGAYIKLRALASQGCKEQFIIESQEHADKLIIK DDNGENILSIEVECHPEAFGLAKEINKSHPKPKNISLGDITRLVFFGDSLSDSLGRMF EKTHHILPSYGQYFGGRFTNGFTWTEFLSSPHFLGKEMLNFAEGGSTSASYSCFNCIG DFVSNTDRQVASYTPSHQDLAIFLLGANDYMTLHKDNVIMVVEQQIDDIEKIISGGVN NVLVMGIPDLSLTPYGKHSDEKRKLKDESIAHNALLKTNVEELKEKYPQHKICYYETA DAFKVIMEAASNIGYDTENPYTHHGYVHVPGAKDPQLDICPQYVFNDLVHPTQEVHHC FAIMLESFIAHHYSTE" gene complement(1722634..1722978) /locus_tag="STM1632" /db_xref="GeneID:1253150" CDS complement(1722634..1722978) /locus_tag="STM1632" /codon_start=1 /transl_table=11 /product="cyanate transporter" /protein_id="NP_460591.1" /db_xref="GI:16764976" /db_xref="GeneID:1253150" /translation="MYLNRFCYLLLIFAAVGSIFTSHPVAMWFLLANVLTLAIYGIDK TAARKTWRRVPESTLLVFGVVGGWPGAIVGQQLFRHKTQKQPFKTYFIVSVIVSILVT VAIYRLYPFLSY" gene 1723877..1724646 /locus_tag="STM1633" /db_xref="GeneID:1253151" regulatory 1723877..1723882 /regulatory_class="ribosome_binding_site" /locus_tag="STM1633" /note="putative RBS for STM1633; RegulonDB:STMS1H001829" CDS 1723885..1724646 /locus_tag="STM1633" /note="similar to E. coli putative periplasmic binding transport protein (AAC74987.1); Blastp hit to AAC74987.1 (266 aa), 25% identity in aa 19 - 232" /codon_start=1 /transl_table=11 /product="amino acid-binding protein" /protein_id="NP_460592.1" /db_xref="GI:16764977" /db_xref="GeneID:1253151" /translation="MLSKKFGLSMIVLGIMSSSAFADSIVEGRTLNVAVSPASPPMLF KSADGKLQGIDLELFSSYCQSRHCKLNITEYAWDGMLGAVASGQADVAFSGISITDKR KKVIDFSEPYYINSFYLVSMANHKITLNNLNELNKYSIGYPRGMAYSDLIKNDLEPKG YYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQL GIAFKKGSPVRDDFNLWLKEQGPQKISGIVDSWMK" gene 1724647..1725300 /locus_tag="STM1634" /db_xref="GeneID:1253152" regulatory 1724647..1724652 /regulatory_class="ribosome_binding_site" /locus_tag="STM1634" /note="putative RBS for STM1634; RegulonDB:STMS1H001830" CDS 1724653..1725300 /locus_tag="STM1634" /note="similar to E. coli putative transport system permease protein (former yecC) (AAC74985.1); Blastp hit to AAC74985.1 (222 aa), 31% identity in aa 14 - 213" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter ATP-binding protein" /protein_id="NP_460593.1" /db_xref="GI:16764978" /db_xref="GeneID:1253152" /translation="MSSGNMLAIFYFLLEGIGNTLLVTFTCFLSAFLTGLTVAVLRRL SPLPLQKILDVLVFILRGIPILIAVFLVYFGLPSIGIYVSPLVAMNLSVGLISGSYLA EVFRGALKLVEPFEITVAKVAGMRQLQVIINIELPQMLRFSVPGIINEFSSVLKATPF AYTVGIAEITKQAMSLTAITLNGLQIYTLAGVLYFIIYKVFTLLAGVFEKKYRIS" gene 1725318..1726056 /locus_tag="STM1635" /db_xref="GeneID:1253153" regulatory 1725318..1725323 /regulatory_class="ribosome_binding_site" /locus_tag="STM1635" /note="putative RBS for STM1635; RegulonDB:STMS1H001831" CDS 1725325..1726056 /locus_tag="STM1635" /note="ATPase component; similar to E. coli putative ATP-binding component of a transport system (AAC76303.1); Blastp hit to AAC76303.1 (252 aa), 42% identity in aa 11 - 230" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter ATP-binding protein" /protein_id="NP_460594.1" /db_xref="GI:16764979" /db_xref="GeneID:1253153" /translation="MALLKLKEISKEYSGKKVLDTVSLKIQSGDMKVVMGPSGCGKTT LLRCLLRLEEPDYGNIYFHGKNIYDKEFTILEFRKKVGCVFQNYALYRHLNVMDNITL ALCKVFGMPGQLAREKALHELQKLDMASHSAKYPSQLSGGQQQRVALARTMVTDPELI IFDEPTSALDPLMTREVGMLIKQLHDNGVTILCVTHDIRLARLLSDNVTFLNHGKIRA EGAFTDLALRETDPDIHCFFSEAQR" gene 1726047..1726733 /locus_tag="STM1636" /db_xref="GeneID:1253154" regulatory 1726047..1726052 /regulatory_class="ribosome_binding_site" /locus_tag="STM1636" /note="putative RBS for STM1636; RegulonDB:STMS1H001832" CDS 1726053..1726733 /locus_tag="STM1636" /note="similar to E. coli putative transport system permease protein (former yecC) (AAC74985.1); Blastp hit to AAC74985.1 (222 aa), 34% identity in aa 10 - 216" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter permease" /protein_id="NP_460595.1" /db_xref="GI:16764980" /db_xref="GeneID:1253154" /translation="MIAGWSLFFNDLTEQLPLVVDGIKETCKLALIVSITGFLWGIII FFLSLSHRPVVKAITRLYMDFFIGTPLILILFVIYYGLPQSGIHLSSFTVAVTGFTLN VGAYNAAYMTTAYNALNKYETEAAVVQGLNKRQVFLWIILPQVLLSSIPALTNQVINN LKDSTIVFLIQYTEFFARIQEVAATSFKFFHAYLFAAIVYLIGVTFIVGLTRFLEHRL LRHYGQGY" gene 1726863..1728420 /locus_tag="STM1637" /db_xref="GeneID:1253155" regulatory 1726863..1726868 /regulatory_class="ribosome_binding_site" /locus_tag="STM1637" /note="putative RBS for STM1637; RegulonDB:STMS1H001833" CDS 1726870..1728420 /locus_tag="STM1637" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460596.1" /db_xref="GI:16764981" /db_xref="GeneID:1253155" /translation="MALPQLSIWQPGDGLRKIKYKYHVCLIVIFSVLIRLLFLTDRYL WCDEASSVLISRHSVDNLLFHAAFDVHPPLYYLLLHDWMILWGDSIAAVRSLSLLFGI LTVVLVIALTRWLANERTALLAGWFAALMPMAVHYSQETRMYALMGMLTLAAALALMM WIKTPTHNRYLVAYALLMTFSFYTHYFTLFTLIAHWIAVTILSCQSHKTACYLKLPGW WFANLAIAVAYLPWLPVLFNLLTHLAQLRAGNDIGWIPPVTWRDLPAMYWHFFTGNNG QGFPSFILWLAVGGFIGTVGRISLCNGEYERYQLILFCNLVIPVMLVFIISWWMPLFI DRYFFFSSLSIPPLLAVLLTRAKKAVCGFWFILFTLLFGYGSYHNNPEHIDEFKPLVN YINTRHQPNDAVVVSKMFDYLSYVYYNKRDYRTFLYTPPNAHGTSGRPNAYGFGSLFY AQADQTYIDTLTTLSKSYHRVWLVSGGNFSQDYPLPSEWQNIAKFRSGRFQVQLFVIP TQQARQMQ" gene 1729109..1729546 /locus_tag="STM1638" /db_xref="GeneID:1253156" CDS 1729109..1729546 /locus_tag="STM1638" /note="similar to E. coli orf, hypothetical protein (AAC73663.1); Blastp hit to AAC73663.1 (143 aa), 55% identity in aa 1 - 140" /codon_start=1 /transl_table=11 /product="putative SAM-dependent methyltransferase" /protein_id="NP_460597.1" /db_xref="GI:16764982" /db_xref="GeneID:1253156" /translation="MDLNPDSLKIAASRVGNTKIRATLQHDVFDTFPADWHGRFDSVS MYYLLHCLPGEMTTKAKAIKNAGMALKPGGTLFGATILGKEVPHNAFGKKLMAVYNKK GIFSNTNDSADTLRSVLDEHFAKVTLEQHGAVALFSATTPRSS" gene complement(1729817..1730358) /gene="cybB" /locus_tag="STM1639" /db_xref="GeneID:1253157" CDS complement(1729817..1730347) /gene="cybB" /locus_tag="STM1639" /EC_number="1.10.2.-" /note="similar to E. coli cytochrome b(561) (AAC74500.1); Blastp hit to AAC74500.1 (188 aa), 84% identity in aa 13 - 187" /codon_start=1 /transl_table=11 /product="cytochrome B" /protein_id="NP_460598.1" /db_xref="GI:16764983" /db_xref="GeneID:1253157" /translation="MGNKYSGLQIGIHWLVFFLVIVAYAAMELRGFAPRSYRPWFNMT HVSCGITILLLMVARLFIRLKYPTPPIVPRPKPMMTGMAHLGHLVIYLLFIALPVIGL VMMYNRGNPWVAFGITMPHAAEANFERVDMLKSWHVTLANLGYFVIGLHAIAALMHHY FWKDNTLLRMMPRKRD" regulatory complement(1730353..1730358) /regulatory_class="ribosome_binding_site" /gene="cybB" /locus_tag="STM1639" /note="putative RBS for cybB; RegulonDB:STMS1H001834" gene complement(1730464..1731275) /gene="ydcF" /locus_tag="STM1640" /db_xref="GeneID:1253158" CDS complement(1730464..1731264) /gene="ydcF" /locus_tag="STM1640" /note="similar to E. coli orf, hypothetical protein (AAC74496.1); Blastp hit to AAC74496.1 (266 aa), 68% identity in aa 1 - 266" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460599.1" /db_xref="GI:16764984" /db_xref="GeneID:1253158" /translation="MNTTPFPALSAETLLAVNTVGQWLAQNDFSGEQPYSSDCVVLAG NAVIPTIDAACRIAKAQGVPLLISGGIGHSTPFLYAVIARHPRYHTIRTSGRAEAAIL ADIANQFWHIPAEKIWLEDRSTNCGENARFSCALIRQAKENINTAIVVQDPTMQRRTI AAFRRVTNDDTDAPRWLSFPGFVPVLRHLNDGTRFANVEEGIWTVERYLSLIAGELPR LRDDETGYGPRGKDFIIHVDIPRDIENAWQVLQADTTLRSALGQRALR" regulatory complement(1731270..1731275) /regulatory_class="ribosome_binding_site" /gene="ydcF" /locus_tag="STM1640" /note="putative RBS for ydcF; RegulonDB:STMS1H001835" gene complement(1731328..1735230) /gene="hrpA" /locus_tag="STM1641" /db_xref="GeneID:1253159" CDS complement(1731328..1735230) /gene="hrpA" /locus_tag="STM1641" /note="similar to E. coli helicase, ATP-dependent (AAC74495.1); Blastp hit to AAC74495.1 (1281 aa), 95% identity in aa 1 - 1280" /codon_start=1 /transl_table=11 /product="ATP-dependent RNA helicase HrpA" /protein_id="NP_460600.3" /db_xref="GI:409994417" /db_xref="GeneID:1253159" /translation="MTEQSTLTLQVLQQRLDALMLRDKQRFARRLHGVKKVKNPDAQQ AIFQTMAKEIEQAAAQVALREAARPSITYPQNLPVSQKKQDILEAIRDHQVVIVAGET GSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRF SDHVSSNTMVKLMTDGILLAEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLP RRPDLKVIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ AIFDAVDELGRESPGDILIFMSGEREIRDTADALNKLNLRHTEVLPLYARLSNSEQNR VFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQAS ANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAA FPFVEAPDKRNIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLE AQKHGCVREAMIITSALSIQDPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWNYLG EQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHV ALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWTMVAELVETSRLWGR IAARIEPEWVEPVAQHLIKRSYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQI DPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDDTLFEF YDQRISHDVISARHFDSWWKKISRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGN LKLRLSYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRRELVIALIKSLPKPV RRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVTVDREDWHWDQVPEHLKIT FRVVNDKNKKLQEGRSLAELKNALKGKVQETLSAVADDGIEQSGLHIWSFGELPESYE QKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWCGLRRLLLLNIPSPIKYLHEK LPNKAKLGLYFNPYGKVLELIDDCIACGVDKLIDANGGPVWSEAGFTALHEKVRAELN DTVVDIAKQVERILTTVFNINKRLKGRVDMSMALGLSDIKAQMSGLVYRGFVTGNGFK RLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVESVQQAWQQWINKLPPARREDDDVK EIRWMIEELRVSYFAQQLGTPYPISDKRILQAMDQITA" gene 1735419..1736036 /gene="acpD" /locus_tag="STM1642" /db_xref="GeneID:1253160" regulatory 1735419..1735424 /regulatory_class="ribosome_binding_site" /gene="acpD" /locus_tag="STM1642" /note="putative RBS for acpD; RegulonDB:STMS1H001836" CDS 1735431..1736036 /gene="acpD" /locus_tag="STM1642" /EC_number="3.1.4.14" /note="similar to E. coli acyl carrier protein phosphodiesterase (AAC74494.1); Blastp hit to AAC74494.1 (201 aa), 87% identity in aa 1 - 201" /codon_start=1 /transl_table=11 /product="FMN-dependent NADH-azoreductase" /protein_id="NP_460601.1" /db_xref="GI:16764986" /db_xref="GeneID:1253160" /translation="MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLA ANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNFNIP TQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVF LGFIGITDVNFVFAEGIAYGPEVAAKAQADAKAAIDSVVAA" gene complement(1736033..1736482) /locus_tag="STM1643" /db_xref="GeneID:1253161" CDS complement(1736033..1736482) /locus_tag="STM1643" /codon_start=1 /transl_table=11 /product="aldehyde-activating protein" /protein_id="NP_460602.1" /db_xref="GI:16764987" /db_xref="GeneID:1253161" /translation="MTSEKLSAACHCGSVVFTVQLSDGFHTARRCNCSFCRMRGAVAV SAPLSGIKVLKGQDKLTEYRFNTGKAVHFFCSVCGIYTFHQRRSNPDQYGVNVACIEN MSPFDFACVEVNDGVTHPSDGGSSGVVGYLRYKPKKSPPVETGGKNI" gene complement(1736625..1736957) /gene="ydbL" /locus_tag="STM1644" /db_xref="GeneID:1253162" CDS complement(1736625..1736948) /gene="ydbL" /locus_tag="STM1644" /note="similar to E. coli orf, hypothetical protein (AAC74465.1); Blastp hit to AAC74465.1 (110 aa), 70% identity in aa 3 - 109" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460603.1" /db_xref="GI:16764988" /db_xref="GeneID:1253162" /translation="MKKYLILWVLTLSLLTPSVWALTLDEARTQGRVGETLNGYLVAL KNDAETQKLVLDINHARRASYQQLADSNHLPVDEVAKMAGQKLVERARPGEYVQGING KWMRK" regulatory complement(1736952..1736957) /regulatory_class="ribosome_binding_site" /gene="ydbL" /locus_tag="STM1644" /note="putative RBS for ydbL; RegulonDB:STMS1H001837" gene complement(1736956..1737158) /gene="ynbE" /locus_tag="STM1645" /db_xref="GeneID:1253163" CDS complement(1736956..1737147) /gene="ynbE" /locus_tag="STM1645" /note="similar to E. coli orf, hypothetical protein (AAC74464.1); Blastp hit to AAC74464.1 (61 aa), 73% identity in aa 1 - 61" /codon_start=1 /transl_table=11 /product="YnbE family lipoprotein" /protein_id="NP_460604.1" /db_xref="GI:16764989" /db_xref="GeneID:1253163" /translation="MKMSIAMLSALASFIVVGCTPRIEVAAPEQPITINMNVKIEHEI HIKVDKDVEELLKSRSDLF" gene complement(1737147..1739800) /gene="ydbH" /locus_tag="STM1646" /db_xref="GeneID:1253164" CDS complement(1737147..1739783) /gene="ydbH" /locus_tag="STM1646" /note="similar to E. coli orf, hypothetical protein (AAC74463.1); Blastp hit to AAC74463.1 (879 aa), 78% identity in aa 1 - 878" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460605.1" /db_xref="GI:16764990" /db_xref="GeneID:1253164" /translation="MKGKYKAALALLLLLILIPLTLLMTLGLWVPTLAGIWLPVGTRI ALEQSPRLTRHGLVIPDLRYLVNDCSLAHITQAELTHPSRWLLNIKSLKLDAACLAKL PATEASPAAPRTLAQWQSMLPNTWINIDNVILAPWPEWQGKLAISMTPVIQQIRYQGE KVKFQGQLRGQALTVSQLEIAALANQPPVSLAGEFVLPLVPDGLPVSGHAAATLRLPQ EPSLVDAELEWRDNAGQLIVMARGNPDPILDLPWAVTRQRLTISDGRWNWPYQGFPLS GRLAFNIDNWQAGPDNAQVSGRLNILTQGDAGKANAVLTIGPGKLSMDSSEMPLQLTG EAKQKDLIFYAVLPAMFRGSLADPQLTFAPGALLRSRGRVIDALDIDEIRWPLAGVKV TPRGVDGRLQAILRAHENEMGDFVLHLDGLANDFLPDAGRWRWRYWGQGSFTPMRAHW DIAGQGEWHDNTIRLTSLSTGFDQLHYGAMTVTSPRLALNKPIVWVRDATTPSLQGAL SLVAGKTVFTSGSVLPPSTLNFSVEGREPTLFQFKGDLRAGAIGPVRLNGRWDGERLR GQAWWPKQSLIVFQPLLPPDWKMTLREGSLYAQVAFSAAQGQGFEAGGHGVLKGGSAW MPDNKINGVDFILPFRFHNGAWQLGTRGPISLRIAGIVNQVTAKNITADLQGGYPWSE SNPLLLSDVSVDVLGGQIIMKQLRMPQHDPALLRVQNISSSELISAINPKQFAMSGPV SGALPLWLNNEKWIIKDGWLTNPGPMTLRIDKDTADAVVKDNVTAGSAINWLRYMEIT HSWTKINVDNLGVLTMQAAITGKSRVDGKTAIVNLNYTHEENVFTLWRSLRFGDNLQA WLEQNTALPQPPCRKDKDCEDK" regulatory complement(1737153..1737158) /regulatory_class="ribosome_binding_site" /gene="ynbE" /locus_tag="STM1645" /note="putative RBS for ynbE; RegulonDB:STMS1H001838" regulatory complement(1739795..1739800) /regulatory_class="ribosome_binding_site" /gene="ydbH" /locus_tag="STM1646" /note="putative RBS for ydbH; RegulonDB:STMS1H001839" gene 1740009..1741012 /gene="ldhA" /locus_tag="STM1647" /db_xref="GeneID:1253165" regulatory 1740009..1740014 /regulatory_class="ribosome_binding_site" /gene="ldhA" /locus_tag="STM1647" /note="putative RBS for ldhA; RegulonDB:STMS1H001840" CDS 1740023..1741012 /gene="ldhA" /locus_tag="STM1647" /EC_number="1.1.1.28" /note="similar to E. coli fermentative D-lactate dehydrogenase, NAD-dependent (AAC74462.1); Blastp hit to AAC74462.1 (329 aa), 94% identity in aa 1 - 328" /codon_start=1 /transl_table=11 /product="2-hydroxyacid dehydrogenase" /protein_id="NP_460606.1" /db_xref="GI:16764991" /db_xref="GeneID:1253165" /translation="MKLAVYSTKQYDKKYLQQVNEAFGFELEFFDFLLTEKTAKTANG CEAVCIFVNDDGSRPVLEELKKHGVKYIALRCAGFNNVDLDAAKELGLQVVRVPAYSP EAVAEHAIGMMMTLNRRIHRAYQRTRDANFSLEGLTGFTMHGKTAGVIGTGKIGVAAL RILKGFGMRLLAFDPYPSTAALDLGVEYVDLQTLFAESDVISLHCPLTPENYHLLNHA AFDQMKNGVMVINTSRGALIDSQAAIEALKNQKIGSLGMDVYENERDLFFEDKSNDVI QDDVFRRLSACHNVLFTGHQAFLTAEALISISETTLQNLSQLEKGEACPNALF" gene 1741113..1741533 /gene="hslJ" /locus_tag="STM1648" /db_xref="GeneID:1253166" regulatory 1741113..1741118 /regulatory_class="ribosome_binding_site" /gene="hslJ" /locus_tag="STM1648" /note="putative RBS for hslJ; RegulonDB:STMS1H001841" CDS 1741123..1741533 /gene="hslJ" /locus_tag="STM1648" /note="similar to E. coli heat shock protein hslJ (AAC74461.1); Blastp hit to AAC74461.1 (140 aa), 69% identity in aa 1 - 138" /codon_start=1 /transl_table=11 /product="heat shock protein hslJ" /protein_id="NP_460607.1" /db_xref="GI:16764992" /db_xref="GeneID:1253166" /translation="MKKIVTLVALSIIMTGCVSSGKVSVKREQLEHHRFVLESVNGKT VTGPELSFGEDMTVSGKMCNQFTGEGKLSDGELKVKNLAMTRMMCADPQLNALDGTLS ELFSKGAQVDLTANQLTLATAETTLMYKLADLAH" gene complement(1741577..1741843) /locus_tag="STM1649" /db_xref="GeneID:1253167" CDS complement(1741577..1741843) /locus_tag="STM1649" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460608.2" /db_xref="GI:1135519650" /db_xref="GeneID:1253167" /translation="MRAAFWVGCAALLLSACSSEPVQQATAAHVSPGMKAAMSSAGEA NCAMIGGSLSAARQLDGSVIGMCALPNGKRCSEQSLAAGSCGSY" regulatory complement(1741733..1741738) /regulatory_class="ribosome_binding_site" /locus_tag="STM1649" /note="putative RBS for STM1649; RegulonDB:STMS1H001842" gene 1741754..1742058 /locus_tag="STM1650" /db_xref="GeneID:1253168" regulatory 1741754..1741759 /regulatory_class="ribosome_binding_site" /locus_tag="STM1650" /note="putative RBS for STM1650; RegulonDB:STMS1H001843" CDS 1741759..1742058 /locus_tag="STM1650" /codon_start=1 /transl_table=11 /product="putative reverse transcriptase" /protein_id="NP_460609.1" /db_xref="GI:16764994" /db_xref="GeneID:1253168" /translation="MPRLPAEQVRYCKPTIITRHIPPKTLRAFLSPLFIHPNDTALNN RQQKLTRREAKRAFMRFINIYWQFFTSFRQEIAILLPPGTQKRKWGLKGFAKIKG" gene 1742108..1745643 /gene="nifJ" /locus_tag="STM1651" /db_xref="GeneID:1253169" regulatory 1742108..1742113 /regulatory_class="ribosome_binding_site" /gene="nifJ" /locus_tag="STM1651" /note="putative RBS for nifJ; RegulonDB:STMS1H001844" CDS 1742119..1745643 /gene="nifJ" /locus_tag="STM1651" /EC_number="1.2.7.1" /note="similar to E. coli putative oxidoreductase, Fe-S subunit (AAC74460.1); Blastp hit to AAC74460.1 (1174 aa), 92% identity in aa 1 - 1174" /codon_start=1 /transl_table=11 /product="putative pyruvate-flavodoxin oxidoreductase" /protein_id="NP_460610.1" /db_xref="GI:16764995" /db_xref="GeneID:1253169" /translation="MQTIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGL KNVWGDTPRVVEMQSEGGAIAAVHGALQTGSLSTSFTSSQGLLLMIPTLYKLAGQLTP FVLHVAARTVATHALSIFGDHSDVMAVRQTGCAMLCAASVQEAQDFALIAHRATLKSR VPFIHFFDGFRTSHEINKIIPLTNETILNLMPQAEIDAHRARALNPEHPVIRGTSANP DTYFQSREATNPWYNAVYDHVEEAMKAFGDATGRQYQPFEYYGHPQAERVIIMMGSAL GTCEEVVDELLIRGEKVGVLKVRLFRPFSAKHLLQALPETVRAIAVLDRTKEPGAQAE PLYLDVMTALAEAFNNGERETLPRTIGGRYGLSSKEFGPACVLAVFNELSRAKPKPRF TVGIYDDVTNLSLPLPENTLPGSAKLEALFYGLGSDGSVSATKNNIKIIGNSTPWYAQ GYFVYDSKKAGGLTVSHLRVSEKPIRSAYLIAQADFVGCHQLQFIDKYQMAERLKPGG IFLLNTPYSADEVWSRLPQEVQAVLNQKKARFYVVNAAKIARECGLGARINTVMQMAF FHLTHILPGDSALVELQGAIAKSYSSKGQDLVERNWQALALAQESLAEVPLQAVNPHS AHRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALPPDGTWPMGTTRWEKRNIAEEIP VWKEELCTQCNHCVAACPHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKYVLQV APEDCTGCNLCVEVCPAKDRQDPQIKAINMMSRLEHVEEEKVNYDFFLDLPEIERSKL ERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRMLIANATGCSSIYGGNLP STPYTTDANGRGPAWANSLFEDNAEFGLGFRLSVDQHRARVMRLLAQFADRIPAELND ALHAEATPDVRREQVAALRQHLKSVAGAEELLKDADALVEKSIWLIGGDGWAYDIGFG GLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRKARKDLGVSMM MYGHVYVAQISLGAQLNQTVKAIQEAEAWPGPSLIIAYSPCEEHGYDLALSHDQMRQL TATGFWPLYRFDPRRADEGKPPLALDSRPPSDALAETLLNEQRFRRLNAQQPEVAEQL WRDAALDLQKRYDFLALLAGKAEKPGAD" gene 1746114..1746559 /gene="ynaF" /locus_tag="STM1652" /db_xref="GeneID:1253170" regulatory 1746114..1746119 /regulatory_class="ribosome_binding_site" /gene="ynaF" /locus_tag="STM1652" /note="putative RBS for ynaF; RegulonDB:STMS1H001845" CDS 1746125..1746559 /gene="ynaF" /locus_tag="STM1652" /note="similar to E. coli putative filament protein (AAC74458.1); Blastp hit to AAC74458.1 (168 aa), 90% identity in aa 25 - 168" /codon_start=1 /transl_table=11 /product="universal stress protein F" /protein_id="NP_460611.1" /db_xref="GI:16764996" /db_xref="GeneID:1253170" /translation="MNRTILVPIDISDSELTQRVISHVEAEAKIDDAKVHFLTVIPSL PYYASLGLAYSAELPAMDDLKAEAKSQLEAIIKKFNLPADRVQAHVAEGSPKDKILEM AKKLPADMVIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR" gene complement(1746609..1746964) /locus_tag="STM1653" /db_xref="GeneID:1253171" CDS complement(1746609..1746947) /locus_tag="STM1653" /note="similar to E. coli methylviologen resistance (AAC73644.1); Blastp hit to AAC73644.1 (110 aa), 59% identity in aa 5 - 110" /codon_start=1 /transl_table=11 /product="cation transporter" /protein_id="NP_460612.1" /db_xref="GI:16764997" /db_xref="GeneID:1253171" /translation="MTKEAVIFLFIAIVVEVIATISLKLSDSFTRLVPSLVTIIGYCI AFWCLTIPMRTIPAGIIYAIWSGVGIVLIGLIGWLFLGQKLDVPAIIGMLLIICGVIV INLFSKSVSH" regulatory complement(1746959..1746964) /regulatory_class="ribosome_binding_site" /locus_tag="STM1653" /note="putative RBS for STM1653; RegulonDB:STMS1H001846" gene 1747290..1748238 /gene="ydaO" /locus_tag="STM1654" /db_xref="GeneID:1253172" regulatory 1747290..1747295 /regulatory_class="ribosome_binding_site" /gene="ydaO" /locus_tag="STM1654" /note="putative RBS for ydaO; RegulonDB:STMS1H001847" CDS 1747303..1748238 /gene="ydaO" /locus_tag="STM1654" /note="similar to E. coli orf, hypothetical protein (AAC74426.1); Blastp hit to AAC74426.1 (311 aa), 94% identity in aa 1 - 311" /codon_start=1 /transl_table=11 /product="tRNA 2-thiocytidine(32) synthetase TtcA" /protein_id="NP_460613.1" /db_xref="GI:16764998" /db_xref="GeneID:1253172" /translation="MQEIQKNTKKEQYNLNKLQKRLRRNVGEAIADFNMIEEGDRIMV CLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGVEYKI VEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFL NMFYGGKMKGMPPKLMSDDGKHIVIRPLAYCREKDIIRFAEAKAFPIIPCNLCGSQPN LQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGITHGSEVVDGGD LAFDREEIPLQPAGWQPEEDDTALEALRLDVIEVK" gene complement(1748282..1749655) /gene="dbpA" /locus_tag="STM1655" /db_xref="GeneID:1253173" CDS complement(1748282..1749655) /gene="dbpA" /locus_tag="STM1655" /note="stimulated by 23S rRNA; similar to E. coli ATP-dependent RNA helicase (AAC74425.1); Blastp hit to AAC74425.1 (457 aa), 87% identity in aa 1 - 457" /codon_start=1 /transl_table=11 /product="ATP-dependent RNA helicase DbpA" /protein_id="NP_460614.1" /db_xref="GI:16764999" /db_xref="GeneID:1253173" /translation="MTTFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVR VQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTK ILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLD MGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQ QFFETSAHEKISLLQTLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLE QRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTAR AGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQPLLPLAAEMATLCIDGGKK AKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWKQLQNGKIKGKS CRVRLLK" gene complement(1750142..1751136) /locus_tag="STM1656" /db_xref="GeneID:1253174" CDS complement(1750142..1751125) /locus_tag="STM1656" /note="similar to E. coli orf, hypothetical protein (AAC74424.1); Blastp hit to AAC74424.1 (327 aa), 92% identity in aa 1 - 327" /codon_start=1 /transl_table=11 /product="zinc transporter ZntB" /protein_id="NP_460615.1" /db_xref="GI:16765000" /db_xref="GeneID:1253174" /translation="MEAIKGSDVNVPDAVFAWLLDGRGGVKPLEDNDVIDSQHPCWLH LNYTHPDSARWLASTPLLPNNVRDALAGESSRPRVSRMGEGTLITLRCINGSTDERPD QLVAMRLYMDERFIVSTRQRKVLALDDVVSDLQEGTGPVDCGGWLVDVCDALTDHASE FIEELHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPW MSDDHRRRMQDIADRLGRGLDEIDACIARTGIMADEIAQVMQESLARRTYTMSLMAMV FLPSTFLTGLFGVNLGGIPGGGWRFGFSLFCILLVVLIGGVTLWLHRSKWL" regulatory complement(1751131..1751136) /regulatory_class="ribosome_binding_site" /locus_tag="STM1656" /note="putative RBS for STM1656; RegulonDB:STMS1H001848" gene complement(1751271..1752430) /locus_tag="STM1657" /db_xref="GeneID:1253175" CDS complement(1751271..1752425) /locus_tag="STM1657" /note="similar to E. coli methyl-accepting chemotaxis protein I, serine sensor receptor (AAC77311.1); Blastp hit to AAC77311.1 (551 aa), 39% identity in aa 195 - 519" /codon_start=1 /transl_table=11 /product="chemoreceptor protein" /protein_id="NP_460616.1" /db_xref="GI:16765001" /db_xref="GeneID:1253175" /translation="MLRNISVRTCIILFMVCAFLLVDTLQIAFLHDLPILITCNIIYL ISALLLWWYMTCYLVVPINTVKKSIEEVAAGNLSIHISEFGNNCAGRLIPGINSLSEN ISALVREIRSSSQTAMTLSEQLAARSLSLSVKTEQQSASLIQTAASIDEMAASTKNNA DNTRMASIQADCATQCARKGGELMVRVTENMRSITDCASQMTEIISLIDGIAFQTNIL ALNAAVEAARAGDHGKGFSVVAGEVRNLAHRSAEAAKSIKALIDVTHDNVRQGAAIVQ EAEKNMQEIVGGSGQLNVLMSEISTTTREQEKGINQITLALSDLESATHSNVLMVEAL SASSDVLKAQVIELQTKTDKFRLSQPGYSEHALSHSHVSSLSTITRRGQA" regulatory complement(1752425..1752430) /regulatory_class="ribosome_binding_site" /locus_tag="STM1657" /note="putative RBS for STM1657; RegulonDB:STMS1H001849" gene complement(1752836..1753413) /gene="ydaL" /locus_tag="STM1658" /db_xref="GeneID:1253176" CDS complement(1752836..1753399) /gene="ydaL" /locus_tag="STM1658" /note="similar to E. coli orf, hypothetical protein (AAC74422.1); Blastp hit to AAC74422.1 (187 aa), 86% identity in aa 1 - 187" /codon_start=1 /transl_table=11 /product="DNA endonuclease" /protein_id="NP_460617.1" /db_xref="GI:16765002" /db_xref="GeneID:1253176" /translation="MNLDDKALFLDAMEDVQPLKRHTDVHWQPTRNLKTPQRIDTLQL DNFLTTGFLDILPLNEPLEFRREGLQQGVIDKLRSGKYPQQASLNLLRQPVETCRKML FRFILEAQKEGLRNVLIIHGKGREAKSHANIVRSYVARWLTEFEDVQAYCSALPHHGG GGACYVALRKTVQAKQDNWERHAKRSR" regulatory complement(1753408..1753413) /regulatory_class="ribosome_binding_site" /gene="ydaL" /locus_tag="STM1658" /note="putative RBS for ydaL; RegulonDB:STMS1H001850" gene 1753649..1754172 /gene="ogt" /locus_tag="STM1659" /db_xref="GeneID:1253177" regulatory 1753649..1753654 /regulatory_class="ribosome_binding_site" /gene="ogt" /locus_tag="STM1659" /note="putative RBS for ogt; RegulonDB:STMS1H001851" CDS 1753657..1754172 /gene="ogt" /locus_tag="STM1659" /EC_number="2.1.1.63" /note="methylated-DNA--protein-cysteine methyltransferase. (SW:OGT_SALTY)" /codon_start=1 /transl_table=11 /product="methylated-DNA--protein-cysteine methyltransferase" /protein_id="NP_460618.1" /db_xref="GI:16765003" /db_xref="GeneID:1253177" /translation="MLRLLEEKIATPLGPLWVVCDEQFRLRAIEWEQYRDRMEQLLNI HYRHEGYERVSATNPGGLSDKLADYFAGNLAVIDTLETATGGTPFQREVWQALRAIPC GQVMHYGQLAAQLGRPGAARAVGAANGANPISIVVPCHRVIGRNGTLTGYAGGVQRKE WLLRHEGYLLL" protein_bind 1754206..1754228 /note="putative binding site for FNR, RegulonDB: STMS1H000155" /bound_moiety="FNR" gene 1754273..1755120 /gene="fnr" /locus_tag="STM1660" /db_xref="GeneID:1253178" regulatory 1754273..1754281 /regulatory_class="minus_35_signal" /gene="fnr" /locus_tag="STM1660" /note="putative -35_signal for fnr; RegulonDB:STMLTH004496" protein_bind 1754278..1754302 /gene="fnr" /locus_tag="STM1660" /note="putative binding site for FNR, RegulonDB: STMS1H000156" /bound_moiety="FNR" regulatory 1754300..1754308 /regulatory_class="minus_10_signal" /gene="fnr" /locus_tag="STM1660" /note="putative -10_signal for fnr; RegulonDB:STMLTH004496" CDS 1754326..1755120 /gene="fnr" /locus_tag="STM1660" /note="regulates aerobic, anaerobic respiration and osmotic balance (CRP family); fumarate and nitrate reduction regulatory protein. (SW:FNR_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_460619.3" /db_xref="GI:1109557640" /db_xref="GeneID:1253178" /translation="MLKLTNINYGLSRPMIPEKRIIRRIQSGGCAIHCQDCSISQLCI PFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQ ITGFHLAGDLVGFDAIGSGHHPSFAQALETSMVCEIPFETLDDLSGKMPNLRQQMMRL MSGEIKGDQDMILLLSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYL GLTVETISRLLGRFQKSGMLAVKGKYITIENSDALAALAGHTRNVA" gene 1755258..1756218 /gene="ydaA" /locus_tag="STM1661" /db_xref="GeneID:1253179" regulatory 1755258..1755263 /regulatory_class="ribosome_binding_site" /gene="ydaA" /locus_tag="STM1661" /note="putative RBS for ydaA; RegulonDB:STMS1H001852" CDS 1755271..1756218 /gene="ydaA" /locus_tag="STM1661" /note="similar to E. coli orf, hypothetical protein (AAC74415.1); Blastp hit to AAC74415.1 (316 aa), 95% identity in aa 1 - 315" /codon_start=1 /transl_table=11 /product="universal stress protein UspE" /protein_id="NP_460620.1" /db_xref="GI:16765005" /db_xref="GeneID:1253179" /translation="MAMYQNMLVVIDPNQDDQPALRRAVYLHQRIGGKIKAFLPIYDF SYEMTTLLSPDERTAMRQGVISQRTAWIREQAKYYLEAGVPIEIKVVWHNRPFEAIIQ EVIAGSHDLVLKMAHQHDRLEAVIFTPTDWHLLRKCPSPVWMVKDQPWPEGGKALVAV NLASEEPYHNALNEKLVKETLQLAEQVNHTEVHLVGAYPVTPINIAIELPEFDPSVYN DAIRGQHLLAMKALRQKFSIDEKVTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGL SAAFLGNTAEQVIDHLRCDLLVIKPDEYQTPVELDDEDD" gene complement(1756273..1756539) /gene="ynaJ" /locus_tag="STM1662" /db_xref="GeneID:1253180" CDS complement(1756273..1756527) /gene="ynaJ" /locus_tag="STM1662" /note="similar to E. coli orf, hypothetical protein (AAC74414.1); Blastp hit to AAC74414.1 (85 aa), 88% identity in aa 1 - 84" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460621.1" /db_xref="GI:16765006" /db_xref="GeneID:1253180" /translation="MIMMKLKSAKGKKFLLCLLAVFIVAASVVTRATIGGVIEQYHIP LSEWTSSMYAIQSAMIFVYSLVFTILLAIPLGIYFLGGDE" regulatory complement(1756534..1756539) /regulatory_class="ribosome_binding_site" /gene="ynaJ" /locus_tag="STM1662" /note="putative RBS for ynaJ; RegulonDB:STMS1H001853" gene 1756748..1757797 /gene="ynaI" /locus_tag="STM1663" /db_xref="GeneID:1253181" regulatory 1756748..1756753 /regulatory_class="ribosome_binding_site" /gene="ynaI" /locus_tag="STM1663" /note="putative RBS for ynaI; RegulonDB:STMS1H001854" CDS 1756766..1757797 /gene="ynaI" /locus_tag="STM1663" /note="similar to E. coli orf, hypothetical protein (AAC74412.1); Blastp hit to AAC74412.1 (343 aa), 77% identity in aa 1 - 335" /codon_start=1 /transl_table=11 /product="mechanosensitive ion channel protein MscS" /protein_id="NP_460622.1" /db_xref="GI:16765007" /db_xref="GeneID:1253181" /translation="MFTEFFLKNAFNLAILFSCGMALLVVRFWLSRNVQWKKGFTFHA AQFFIYAIIIGTIGSILNNAIEDYNLRFISSGVIDFICTSLIALILTIKLFLIINQFE KAQVNKGRDVTSTRILARVIKITIIVAIVLLYGEHFGMSLSGLLTFGGIGGIAVGMAG KDVLSNFFSGIMLYFDRPFSIGDWIRSPDRNIEGTVAEIGWRITRINTFDHRPLYVPN SVFSSISVENPGRMTNRRIKTVIGLRYEDADKIGLIVDAIRNMLQAHRDIDQKQTLLV YFNEFADSSLNIMVYCFTKTTVWQEWLAVQQDVYLKIIAIVQENGADFAFPSQTLYID DPEAAPATK" gene complement(1757883..1758485) /locus_tag="STM1664" /db_xref="GeneID:1253182" CDS complement(1757883..1758485) /locus_tag="STM1664" /note="similar to E. coli orf, hypothetical protein (AAC74516.1); Blastp hit to AAC74516.1 (178 aa), 28% identity in aa 8 - 169" /codon_start=1 /transl_table=11 /product="XRE family transcriptional regulator" /protein_id="NP_460623.1" /db_xref="GI:16765008" /db_xref="GeneID:1253182" /translation="MTKKVNLSTTAGADVSTINEAVSQRIKQFRSQKKMSLDELARRS GVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVADVVNVASEPMVHLIDRDAIPVLWR GEKGGSAKLMAGTSGPDMLELWQWIMHPGEQFESAGHPADTCELLFVNQGTLTLTVDG RRFIIREGCSAVARTDMPHAYVNDTNEVLEFTMTVNEKSR" gene 1758522..1759215 /locus_tag="STM1665" /db_xref="GeneID:1253183" regulatory 1758522..1758527 /regulatory_class="ribosome_binding_site" /locus_tag="STM1665" /note="putative RBS for STM1665; RegulonDB:STMS1H001855" CDS 1758529..1759215 /locus_tag="STM1665" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460624.1" /db_xref="GI:16765009" /db_xref="GeneID:1253183" /translation="MSSMLPSISPELARIAPGFRALSINVIAAPIRDAQVGEIALKEA CQAVINGQPAWAQAHIDAWNTVLKAFGAKPKRTPCSAEALRKRVLKDGTMAALDPVVD LYNAVSLRYAVPVGGENSAAYCGSPRLVFADGSETFDTLKEGQPATESPEPGEVIWRD DRGVTCRRWNWRQGVRTRLSASDKAMWFILESLPEMPVDELYAAGNMLTDGLEKMMPG LRFESTLIGV" gene 1759243..1759581 /locus_tag="STM1666" /note="pseudogene; in-frame stop following codon 24" /pseudo /db_xref="GeneID:1253184" gene complement(1759687..1760244) /locus_tag="STM1667" /db_xref="GeneID:1253185" CDS complement(1759687..1760244) /locus_tag="STM1667" /note="similar to E. coli thiol peroxidase (AAC74406.1); Blastp hit to AAC74406.1 (168 aa), 30% identity in aa 45 - 159" /codon_start=1 /transl_table=11 /product="putative thiol peroxidase" /protein_id="NP_460625.1" /db_xref="GI:16765010" /db_xref="GeneID:1253185" /translation="MAKIIQMLKGEVFMTPTTTQDYISLGQEHAVTFGKTQLTLKPGI LAEGEPLPCTKGLVSHNLLPGYCIPGIKKQIIVVPSLDTPVCEWQVKDYSDRLKSAGS HSTRAVYVLSMDTPFAQARFIREHDIHPGIIFVSDYACRQFLDNSGLKINELSIFARA LIECDENNVVTRVSVPRDITHLPVY" gene complement(1760343..1761179) /locus_tag="STM1668" /db_xref="GeneID:1253186" CDS complement(1760343..1761173) /locus_tag="STM1668" /codon_start=1 /transl_table=11 /product="putative outer membrane or exported protein" /protein_id="NP_460626.1" /db_xref="GI:16765011" /db_xref="GeneID:1253186" /translation="MRMSKHNLIIYSLLLAAAPISVLADSSTTSAATVGMFSPPTAPS VGHRPGTPRDSYELQFNGLGFFIEKYTPFPGMTIARNARNVGIRDPDNNYQSAETFTT VCTYYQINKDNSQHILKREKPCEHKFNIQKEHRGSKIKLEIYNETDMASASGYTPVPS VSEFQYIETETISNTPSPDLTVMSIDKSVLSPGESATITTIVKDIDGNPVNEVHINKT VARENLKGLWDYGPLKKENVPGKYTQVITYRGHSNERIDISFKYAMSFTKEISIRGRL " regulatory complement(1761174..1761179) /regulatory_class="ribosome_binding_site" /locus_tag="STM1668" /note="putative RBS for STM1668; RegulonDB:STMS1H001857" gene complement(1761194..1763184) /locus_tag="STM1669" /db_xref="GeneID:1253187" CDS complement(1761194..1763176) /locus_tag="STM1669" /note="homology to invasin C of Yersinia; similar to E. coli putative factor (AAC74304.1); Blastp hit to AAC74304.1 (417 aa), 30% identity in aa 38 - 403" /codon_start=1 /transl_table=11 /product="invasin" /protein_id="NP_460627.1" /db_xref="GI:16765012" /db_xref="GeneID:1253187" /translation="MVFSKKPITKYITWAIVTSQIPLPVIADSDNEIQSWIAGTASSI SPHLQEGTLEDYAKGKIKALPGQAANHLVNEGIKSAFPEIIFRGGVNLEDGAKYRSSE FDMFIPVQETTSSLLFGQLGFRDHDNSSFDGRTYVNVGMGYRQEVNGWLLGVNTFLDA DIRYSHLRGGIGGEVYKDSLAFSGNYYFPLTGWKMSAAHELHDERPAYGFDLRTKGTL PDFPWFSGELTYEQYYGDKVDLLGNGTLSRNPRAAGAALVWNPVPLLEVRAGYRDAGN GGSQAEGGLRVNYSFGTPLHEQLDYRNVGAPSNTTNRRAFVDRNYDIVMAYREQASKI RITAMPVSGLSGTLVTLMATVDSRYPVEKVEWSGDAELLAGLQLQGSLGSGLILPQLP LTATDGQEYSLYLTVTDSRGTRVTSERIPVRVTQDETSFRSWINVINDDVQVEDGNFV INTPLPAGEEGKVIEWHYVRERSEEEWASLKPRHIKYQSDTPGLAFKALGGTERDGHW VERVLVTHIGDDARSLKLHIEASGPDDKHPVKGTVLLQAQSDSIAQKVTSVEVLFTPG TEEANGSVTAPVVGTEMRARTLCVNNTDCTDAFNYQWEISDEMKSWQSVPGATKATWL LPYSLNGESLQNKYIRVRIISDKGNAKGNTATSDAN" regulatory complement(1763179..1763184) /regulatory_class="ribosome_binding_site" /locus_tag="STM1669" /note="putative RBS for STM1669; RegulonDB:STMS1H001858" gene complement(1763251..1764101) /locus_tag="STM1670" /db_xref="GeneID:1253188" CDS complement(1763251..1764096) /locus_tag="STM1670" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460628.1" /db_xref="GI:16765013" /db_xref="GeneID:1253188" /translation="MYFKRSLLTLAICASVVSVEAVANTRANDMASSATPASVGHRPV ATTNAKKIEVSGELTTGSTLQIADVFIRDEDGDPLSLDKMNNADDIKWYLVDNEAADP SGTPAATGTAFTIPADAGGKKIKIVYRIKTATGTPDSAFLPATVLLTSASSGVSGDSA ADGTISNKLRSVTINVVNESGKPTDELNGTNDANTPVVGGTLEAVLECAATAAAECEV SNYNFTWQMADAGTPDKFTDLNNTNAEKHKYIIKGTEQNKLFRVHVTPKTTKATPENK RAIRR" regulatory complement(1764096..1764101) /regulatory_class="ribosome_binding_site" /locus_tag="STM1670" /note="putative RBS for STM1670; RegulonDB:STMS1H001859" gene 1764383..1765247 /locus_tag="STM1671" /db_xref="GeneID:1253189" regulatory 1764383..1764388 /regulatory_class="ribosome_binding_site" /locus_tag="STM1671" /note="putative RBS for STM1671; RegulonDB:STMS1H001860" CDS 1764390..1765247 /locus_tag="STM1671" /note="similar to E. coli putative ARAC-type regulatory protein (AAC73403.1); Blastp hit to AAC73403.1 (239 aa), 35% identity in aa 12 - 210" /codon_start=1 /transl_table=11 /product="putative bacterial regulatory helix-turn-helix protein, araC family" /protein_id="NP_460629.1" /db_xref="GI:16765014" /db_xref="GeneID:1253189" /translation="MMMKKAIIISVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFK EKCGVSIGKYIRQRKLSRSATLLKLTSQSVTDIAFRMGFDSVQSYSREFKKTFGVNPN NYRKADFWDLRNLRPPYWLDCDEHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPI KWKIIHETLRTWGENVYCLSSFKPDNTKDQVIAVSSFFGMEHNSVDGGKIPMSRVIKC GKYAKFHFVGHKEQYQQFSNTIYMCILPKLNLIRREGEDIEYFHLASVQKQQNNESIV DLYYYIPVL" gene 1765638..1766747 /locus_tag="STM1672" /db_xref="GeneID:2673745" CDS 1765638..1766747 /locus_tag="STM1672" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_448089.1" /db_xref="GI:1109557641" /db_xref="GeneID:2673745" /translation="MYIIRGDIIHIFEIRADDMYTTIRNTALAMVACFSYIAHASTHP PLIITRGAGGDASGATVIHDNWRHGTPDLVNLTDIPIDKIRPEKYSCILIIGQGAIKE MLLANNASAILSGKTVGLYSHLIDQNTLRLLRQLQNKVRFNLFFTRSQITLLKLRNIS EYNFLSSKVNNVWGQDSLAIETVAPDRGNIPEKALPLKTTDYVIWLGGNYTTSSGTQR IFTNDQIVVALKPLHNVISSNASIAIMLSPRFFDNSVSKEAKVKRLKAVLNTFSRNRV TFYMSKEMLANLKEFDLPVQLSPSYAELMRMPWASATRHFASVDQYNLFADLIPKVTP FLLEPNDADQALYATDYLNTRRVSLTQNILNHGCD" gene complement(1766961..1767215) /locus_tag="STM1673" /db_xref="GeneID:1253191" CDS complement(1766961..1767215) /locus_tag="STM1673" /note="similar to E. coli orf, hypothetical protein (AAC75872.1); Blastp hit to AAC75872.1 (72 aa), 33% identity in aa 1 - 71" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_460631.3" /db_xref="GI:1109557642" /db_xref="GeneID:1253191" /translation="MPGKREMQKCSLITVLSLSVLMLAGCTTTYTMTTRTGEIIETQG KPEVDTATGMTKYADVYGYHRVMKTSEIVQTTEGASKLDW" gene complement(1767326..1767923) /locus_tag="STM1674" /db_xref="GeneID:1253192" CDS complement(1767326..1767916) /locus_tag="STM1674" /note="similar to E. coli orf, hypothetical protein (AAC77208.1); Blastp hit to AAC77208.1 (84 aa), 46% identity in aa 1 - 84" /codon_start=1 /transl_table=11 /product="TetR family transcriptional regulator" /protein_id="NP_460632.1" /db_xref="GI:16765017" /db_xref="GeneID:1253192" /translation="MTTKHSRTPGRPRQFDPEQAIETAQHLFHSRGYDAVSVADLTKA FGINPPSFYAAFGSKLGLYTRVLKRYRMTDAIPLGALLRHDRPTAKCLIDVLMEAARR YAADPDATGCLVLEGAHCNDKPAREAACEFYIAAENLIRTYVAMRYPQEADRTTDFMG TLMAGLSAKARAGYGLERLQESVLLAGDVLERLLPD" regulatory complement(1767918..1767923) /regulatory_class="ribosome_binding_site" /locus_tag="STM1674" /note="putative RBS for STM1674; RegulonDB:STMS1H001861" gene 1767982..1768707 /locus_tag="STM1675" /db_xref="GeneID:1253193" regulatory 1767982..1767987 /regulatory_class="ribosome_binding_site" /locus_tag="STM1675" /note="putative RBS for STM1675; RegulonDB:STMS1H001862" CDS 1767994..1768707 /locus_tag="STM1675" /note="similar to E. coli putative oxidoreductase (AAC77206.1); Blastp hit to AAC77206.1 (237 aa), 80% identity in aa 1 - 237" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_460633.1" /db_xref="GI:16765018" /db_xref="GeneID:1253193" /translation="MTLFRNKSVLVLGGSRGIGAAIVRRFSADGASVVFSYAGSREAA EKLATETGSIAIQTDSADRDAVISLVREYGPLDILVVNAGVALFGDALEQDSDAIDRL FRINIHAPYHASVEAARNMPEGGRIIIIGSVNGDRMPVPGMAAYAASKSALQGLARGL ARDFGPRGITINVVQPGPIDTDINPEDGPMKELMHSFMAIKRHGRPEEVAGMVAWLAG PEASFVTGAMHTIDGAFGA" gene complement(1768798..1769672) /locus_tag="STM1676" /db_xref="GeneID:1253194" CDS complement(1768798..1769667) /locus_tag="STM1676" /note="similar to E. coli orf, hypothetical protein (AAC76048.1); Blastp hit to AAC76048.1 (236 aa), 41% identity in aa 2 - 224" /codon_start=1 /transl_table=11 /product="aldo/keto reductase" /protein_id="NP_460634.1" /db_xref="GI:16765019" /db_xref="GeneID:1253194" /translation="MEYSILSNNLKMPMVGFGVFKVTDKEECQQSVLSAIRSGYRLID TAAVYGNEDAVGDAVREAIATGLCTREELFITSKLWVQDMANYDLAKAGIEASLKKSG LDYFDLYLLHQAMGDYFSAWRALEDAYEAGKLKAIGVSNFYAHVLANFCETVRITPMV NQVELHPYFAQPAALETMKHYNVQPEAWAPLGGGRHKPYENVMLQGIADAHQKTIAQV VLRWNVQRGVTVIPKSTRQERIEENFAIWDFSLTDNEMAQINALDLGYVGEAVKHFNP EFVRGCLGVKIHD" regulatory complement(1769667..1769672) /regulatory_class="ribosome_binding_site" /locus_tag="STM1676" /note="putative RBS for STM1676; RegulonDB:STMS1H001863" gene complement(1769941..1770851) /locus_tag="STM1677" /db_xref="GeneID:1253195" CDS complement(1769941..1770846) /locus_tag="STM1677" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC76546.1); Blastp hit to AAC76546.1 (323 aa), 35% identity in aa 25 - 313" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_460635.1" /db_xref="GI:16765020" /db_xref="GeneID:1253195" /translation="MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWL KIQLLQRTTRKLSVTAEGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSL ARHCIIPTLPAFLRQYPELELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLA SFNWVIAASPTYIERYGSPENLDDLQKHHAVGYLNHRTGRTIDWFFTREGKDYAIRVQ ETLVVDDTDAYIQAGIQGLGLIRVASYLVAPYLHSGALVTCMDNHSYDLPLALVYPQN RFLPPAVRAFYDWCKTALSQPAPLR" regulatory complement(1770846..1770851) /regulatory_class="ribosome_binding_site" /locus_tag="STM1677" /note="putative RBS for STM1677; RegulonDB:STMS1H001864" gene 1770959..1771894 /locus_tag="STM1678" /db_xref="GeneID:1253196" regulatory 1770959..1770964 /regulatory_class="ribosome_binding_site" /locus_tag="STM1678" /note="putative RBS for STM1678; RegulonDB:STMS1H001865" CDS 1770965..1771894 /locus_tag="STM1678" /codon_start=1 /transl_table=11 /product="aromatic alcohol reductase" /protein_id="NP_460636.1" /db_xref="GI:16765021" /db_xref="GeneID:1253196" /translation="MKQSNNQVGEKVLVLGAGQLGASVLASLVPAVTQRNGSVSVIVS GRSRDKQSKRRSSIHQQLADAGARFIPVDIAGSSVAALKDQFHGFDTIINCMGFVAGA GTQIKITRAVLEAGVKRYFPWQFGVNYDVVGKGSGQPVWDEQYDVRTLLREQNVTEWV IVSTGIFTSFLFEPAFGVVNLAKKTINALGGWEMQVTVTSPADIGRLTTEIYLHQPRI TNEVVFVAGETTSYAKLAETVERVTQQTFTRGVLTLPDLQEQLRLHPHDPMLRYRVAF ARGDGMWWPMSDTWNAQHHLPTQDIAAWLKTQQ" gene complement(1771991..1773615) /gene="mppA" /locus_tag="STM1679" /db_xref="GeneID:1253197" CDS complement(1771991..1773604) /gene="mppA" /locus_tag="STM1679" /note="also negative regulator of mulitple antibiotic resistance; similar to E. coli putative transport periplasmic protein (AAC74411.1); Blastp hit to AAC74411.1 (544 aa), 92% identity in aa 8 - 544" /codon_start=1 /transl_table=11 /product="oligopeptide ABC transporter substrate-binding protein OppA" /protein_id="NP_460637.1" /db_xref="GI:16765022" /db_xref="GeneID:1253197" /translation="MRHSVSVTCCALLVSSFSLAYAADVPGGTVLAEKQELVRHIKDE PASLDPAKAVGLPEIQVIRDLFEGLVNQNEKGEIIPGVASQWKSNDNRIWTFTLRDDA QWADGTPVTAQDFVYSWQRLVDPKTLSPFAWFAALAGITNAQAIIDGKVTPDQLGVSA VDAHTLRVQLDKPLPWFASLTASFAFYPVQKANVESGKDWMKPGKLIGNGAYVLKERV VNEKLVVVPNTHYWDNAKTVLQKVTFLPINQESAATKRYLAGDIDITESFPKNMYQKL LKDIPGQVYTPPQLGTYYYAFNTQKGPTADSRVRLALSMTIDRRLMAEKVLGTGEKPA WHFTPDVTAGFTPDPSPFEQMSQEELNAQAKTLLRAAGYGSQKPLKLTLLYNTSENHQ KIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRNTGNFDVIRASWVGDYNEPSTFLSLL TSTHTGNISRFTNPTYDKILTQATMENTAEARNADYNAAEKILTEQAPIAPIYQYTNG RLIKPWVKGYPITNPEDVAYSRTMYIVKH" regulatory complement(1773610..1773615) /regulatory_class="ribosome_binding_site" /gene="mppA" /locus_tag="STM1679" /note="putative RBS for mppA; RegulonDB:STMS1H001866" gene 1773794..1774522 /gene="ycjI" /locus_tag="STM1680" /db_xref="GeneID:1253198" CDS 1773794..1774522 /gene="ycjI" /locus_tag="STM1680" /note="similar to E. coli putative carboxypeptidase (AAC74408.1); Blastp hit to AAC74408.1 (262 aa), 90% identity in aa 21 - 262" /codon_start=1 /transl_table=11 /product="murein peptide amidase A" /protein_id="NP_460638.1" /db_xref="GI:16765023" /db_xref="GeneID:1253198" /translation="MTVTRPRAERGAFPPGTEHYGRSLLGAPLIWFPAPAVNRESGLI LAGTHGDETSSVVTLSCALRTLNPTLRRHHVVLAVNPDGCQLGLRANANGIDLNRNFP AANWKAGETVYRWNSRAQERDVVLLTGDHPGSEPETQALCQLIHRLQPAWVVSFHDPL ACIEDPRRSELGEWLADAFALPLVTSVGYETPGSFGSWCADLNLHCITAEFPPVSADE ASEKYLLAMSNLLRWHPKDGVDPS" gene complement(1774497..1775473) /gene="ycjG" /locus_tag="STM1681" /db_xref="GeneID:1253199" CDS complement(1774497..1775462) /gene="ycjG" /locus_tag="STM1681" /EC_number="5.5.-.-" /note="similar to E. coli putative muconate cycloisomerase I (AAC74407.1); Blastp hit to AAC74407.1 (335 aa), 85% identity in aa 15 - 335" /codon_start=1 /transl_table=11 /product="L-Ala-D/L-Glu epimerase" /protein_id="NP_460639.1" /db_xref="GI:16765024" /db_xref="GeneID:1253199" /translation="MRSVKVYEETWPLHTPFVIARGSRSEAHVVVVELEEEDVKGIGE CTPYPRYGESDASVMAQIMSIVPQLENGLTREALQKLLPAGAARNAVDSALWDLQARQ RQQSLAGLLGVTLAPVFTTAQTVVIGTPEQMAASAAALWEKGATLLKIKLDARLISER MVAIRSAVPEATLIVDANESWRPEGLAARCQLLADLNVAMLEQPLPAQDDAALENFIH PLPICADESCHTRSSLKALTGRYDMINIKLDKTGGLTEALALATEAREQGFGLMLGCM LCTSRAISAALPLMPQVSFADLDGPTWLAVDVEPALRFTTGQLHL" regulatory complement(1775468..1775473) /regulatory_class="ribosome_binding_site" /gene="ycjG" /locus_tag="STM1681" /note="putative RBS for ycjG; RegulonDB:STMS1H001867" gene 1775565..1776084 /gene="tpx" /locus_tag="STM1682" /db_xref="GeneID:1253200" regulatory 1775565..1775570 /regulatory_class="ribosome_binding_site" /gene="tpx" /locus_tag="STM1682" /note="putative RBS for tpx; RegulonDB:STMS1H001868" CDS 1775578..1776084 /gene="tpx" /locus_tag="STM1682" /EC_number="1.11.1.-" /note="similar to E. coli thiol peroxidase (AAC74406.1); Blastp hit to AAC74406.1 (168 aa), 88% identity in aa 1 - 168" /codon_start=1 /transl_table=11 /product="lipid hydroperoxide peroxidase" /protein_id="NP_460640.1" /db_xref="GI:16765025" /db_xref="GeneID:1253200" /translation="MSQTVHFQGNPVTVANVIPQAGSKAQAFTLVAKDLSDVSLSQYA GKRKVLNIFPSIDTGVCAASVRKFNQLATEVENTVVLCVSADLPFAQSRFCGAEGLSN VITLSTLRNNEFLKNYGVEIVDGPLKGLAARAVIVLDENDNVIFSQLVDEITHEPDYD AALNVLKA" gene complement(1776174..1777837) /gene="tyrR" /locus_tag="STM1683" /db_xref="GeneID:1253201" CDS complement(1776174..1777715) /gene="tyrR" /locus_tag="STM1683" /note="contains intrinsic ATPase and phosphatase activity (EBP family); transcriptional regulatory protein TYRR. (SW:TYRR_SALTY)" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator TyrR" /protein_id="NP_460641.1" /db_xref="GI:16765026" /db_xref="GeneID:1253201" /translation="MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIGRIYLNFA ELEFTDFSSLMAEIRRISGVTDVRTVPWMPSEREHLALSALLEALPEPVLSLDMKSKV EMANPASCQLFAQSQERMRHHTAAQLINGFNFQRWLDGNPQSSHNEHVVINGQNFLME ITPVHLQNENDEYVLTGAVVMLRSTIRMGQQLQNLSTQDLSAFSQIIAVSAKMKHVVE QARKLAMLSAPLLITGDTGTGKDLFAYACHQASPRSAKPYLALNCASIPEDAVESELF GHAPEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEIHVDVR VICATQKNLVELVQKGLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ GVPRPKLSADLSTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDILLPDYDAATV AVGEDAMEGSLDDITSRFERSVLTQLYRSYPSTRKLAKRLGVSHTAIANKLREYGLSQ KKGEE" regulatory complement(1777725..1777730) /regulatory_class="ribosome_binding_site" /gene="tyrR" /locus_tag="STM1683" /note="putative RBS for tyrR; RegulonDB:STMS1H001869" protein_bind complement(1777782..1777804) /gene="tyrR" /locus_tag="STM1683" /note="putative binding site for TyrR, RegulonDB: STMS1H000385" /bound_moiety="TyrR" regulatory complement(1777810..1777818) /regulatory_class="minus_10_signal" /gene="tyrR" /locus_tag="STM1683" /note="putative -10_signal for tyrR; RegulonDB:STMLTH004497" regulatory complement(1777829..1777837) /regulatory_class="minus_35_signal" /gene="tyrR" /locus_tag="STM1683" /note="putative -35_signal for tyrR; RegulonDB:STMLTH004497" gene complement(1777863..1778940) /gene="ycjF" /locus_tag="STM1684" /db_xref="GeneID:1253202" CDS complement(1777863..1778924) /gene="ycjF" /locus_tag="STM1684" /note="similar to E. coli orf, hypothetical protein (AAC74404.1); Blastp hit to AAC74404.1 (353 aa), 88% identity in aa 1 - 353" /codon_start=1 /transl_table=11 /product="TIGR01620 family protein" /protein_id="NP_460642.1" /db_xref="GI:16765027" /db_xref="GeneID:1253202" /translation="MSEPLKPRIDFAEPLKEEPTSAFKAQQTFSEAESRTFAPAAIDE RPEDEGAAEAAVDAALRPKRSLWRKMVMGGLALFGASVVGQGVQWTMNAWQTQDWVAL GGCAAGALIVGAGVGSVVTEWRRLWRLRQRAHERDEARELLHSHSVGKGRAFCEKLAQ QAGIDQSHPALQRWYAAIHETQNDREIVGLYANLVQPVLDAQARREISRFAAESTLMI AVSPLALVDMAFIAWRNLRLINRIATLYGIELGYYSRLRLFRLVLLNIAFAGASELVR EVGMDWMSQDLAARLSTRAAQGIGAGLLTARLGIKAMELCRPLPWIDNDKPRLGDFRR QLIGQLKETLQKSKSSPEK" gene complement(1778921..1780337) /gene="ycjX" /locus_tag="STM1685" /db_xref="GeneID:1253203" CDS complement(1778921..1780324) /gene="ycjX" /locus_tag="STM1685" /note="similar to E. coli putative EC 2.1 enzymes (AAC74403.1); Blastp hit to AAC74403.1 (465 aa), 93% identity in aa 1 - 465" /codon_start=1 /transl_table=11 /product="putative ATPase" /protein_id="NP_460643.3" /db_xref="GI:1109557643" /db_xref="GeneID:1253203" /translation="MSMKRLKTEFNALVNRGVDRHLRLAVTGLSRSGKTAFITAMVNQ LLNVHAGARLPLLSAVREERLLGVKRVPQRDFGIPRFTYDEGILQLYGNPPAWPTPTR GVSEIRLALRYRSNDSLLRHFKDTSTLYLEIVDYPGEWLLDLPMLAQDYLSWSRQMNG LLQGQRAEWAAKWRQLCDGLDPLAPADENRLAEIAAAWTDYLHQCKSQGLHFIQPGRF VLPGDMAGAPALQFFPWPDVDAFGESKLAQADKQTNAGMLRERFNYYCEKVVKGFYKN HFLRFDRQIVLVDCLQPLNSGPQAFNDMRLALTQLMQSFHYGQRTLFRRLFSPVIDKL LFAATKADHVTLDQHANMVALLQQLIQDAWQNAAFEGISMDCLGLASVQATTSGVIEV NGEKIPALRGNRLSDGAPLTVYPGEVPSRLPGQAFWDSQGFQFEAFRPQVMDVDKPLP HIRLDAALEFLIGDKLR" regulatory complement(1778935..1778940) /regulatory_class="ribosome_binding_site" /gene="ycjF" /locus_tag="STM1684" /note="putative RBS for ycjF; RegulonDB:STMS1H001870" regulatory complement(1780332..1780337) /regulatory_class="ribosome_binding_site" /gene="ycjX" /locus_tag="STM1685" /note="putative RBS for ycjX; RegulonDB:STMS1H001871" gene complement(1780467..1780793) /gene="pspE" /locus_tag="STM1686" /db_xref="GeneID:1253204" CDS complement(1780467..1780781) /gene="pspE" /locus_tag="STM1686" /note="similar to E. coli phage shock protein (AAC74390.1); Blastp hit to AAC74390.1 (104 aa), 66% identity in aa 1 - 103" /codon_start=1 /transl_table=11 /product="thiosulfate sulfurtransferase PspE" /protein_id="NP_460644.1" /db_xref="GI:16765029" /db_xref="GeneID:1253204" /translation="MLKKGIFALALFIAMPLYAAEYWIDVRIPEQYQREHIQGAINIP LKEIKSHIETVVPDRNDTVKLYCNSGRQSGMAKQMLLDMGYTHAMNMGGISRLDMPKV KK" regulatory complement(1780788..1780793) /regulatory_class="ribosome_binding_site" /gene="pspE" /locus_tag="STM1686" /note="putative RBS for pspE; RegulonDB:STMS1H001872" gene complement(1780857..1781084) /gene="pspD" /locus_tag="STM1687" /db_xref="GeneID:1253205" CDS complement(1780857..1781075) /gene="pspD" /locus_tag="STM1687" /note="similar to E. coli phage shock protein (AAC74389.1); Blastp hit to AAC74389.1 (73 aa), 87% identity in aa 1 - 72" /codon_start=1 /transl_table=11 /product="phage shock protein D" /protein_id="NP_460645.1" /db_xref="GI:16765030" /db_xref="GeneID:1253205" /translation="MNTRWQRAGQKVKPGFKIAGKLVLLTALRYGPAGVAGWAVKSVA RRPLKMLLAFALEPVLRKAANKISQRYK" regulatory complement(1781079..1781084) /regulatory_class="ribosome_binding_site" /gene="pspD" /locus_tag="STM1687" /note="putative RBS for pspD; RegulonDB:STMS1H001873" gene complement(1781098..1781472) /gene="pspC" /locus_tag="STM1688" /db_xref="GeneID:1253206" CDS complement(1781098..1781457) /gene="pspC" /locus_tag="STM1688" /note="regulatory gene; activates expression of psp operon with PspB; similar to E. coli phage shock protein: activates phage shock-protein expression (AAC74388.1); Blastp hit to AAC74388.1 (119 aa), 84% identity in aa 1 - 119" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional activator PspC" /protein_id="NP_460646.1" /db_xref="GI:16765031" /db_xref="GeneID:1253206" /translation="MGGINLNKKLWRMPQKGMVRGVCAGIADYLDVPVKLVRILVVLS IFFGLAFFTVVAYIVLSFVLDPMPDNLAAGKPQPTSGELLDTVDRELAAGEKRLREME RYVTSDTFTLRSRFRQL" gene complement(1781457..1781692) /gene="pspB" /locus_tag="STM1689" /db_xref="GeneID:1253207" CDS complement(1781457..1781681) /gene="pspB" /locus_tag="STM1689" /note="regulatory gene; activates expression of psp operon with PspC; similar to E. coli phage shock protein (AAC74387.1); Blastp hit to AAC74387.1 (74 aa), 89% identity in aa 1 - 74" /codon_start=1 /transl_table=11 /product="phage shock protein B" /protein_id="NP_460647.1" /db_xref="GI:16765032" /db_xref="GeneID:1253207" /translation="MSALFLAIPLTIFVLFVLPIWLWLHYSNRAGRGELSQSEQQRLL QLTDDAQRMRERIQALEDILDAEHPNWRER" regulatory complement(1781467..1781472) /regulatory_class="ribosome_binding_site" /gene="pspB" /locus_tag="STM1689" /note="putative RBS for pspC; RegulonDB:STMS1H001874" regulatory complement(1781687..1781692) /regulatory_class="ribosome_binding_site" /gene="pspB" /locus_tag="STM1689" /note="putative RBS for pspB; RegulonDB:STMS1H001875" gene complement(1781741..1782421) /gene="pspA" /locus_tag="STM1690" /db_xref="GeneID:1253208" CDS complement(1781741..1782409) /gene="pspA" /locus_tag="STM1690" /note="negative regulatory gene for the psp opreon; similar to E. coli phage shock protein, inner membrane protein (AAC74386.1); Blastp hit to AAC74386.1 (222 aa), 91% identity in aa 1 - 222" /codon_start=1 /transl_table=11 /product="phage shock protein PspA" /protein_id="NP_460648.1" /db_xref="GI:16765033" /db_xref="GeneID:1253208" /translation="MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVR SNSARALAEKKQLSRRIEQATAQQIEWQEKAELALRKDKDDLARAALIEKQKLTDLIA TLEQEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGK LDEAMARFESFERRIDQMEAEAESHRFGKQQSLDQQFANLKADDEISEQLAQLKAKMK QDNQ" regulatory complement(1782416..1782421) /regulatory_class="ribosome_binding_site" /gene="pspA" /locus_tag="STM1690" /note="putative RBS for pspA; RegulonDB:STMS1H001876" gene 1782565..1783560 /gene="pspF" /locus_tag="STM1691" /db_xref="GeneID:1253209" regulatory 1782565..1782570 /regulatory_class="ribosome_binding_site" /gene="pspF" /locus_tag="STM1691" /note="putative RBS for pspF; RegulonDB:STMS1H001877" CDS 1782580..1783560 /gene="pspF" /locus_tag="STM1691" /note="similar to E. coli psp operon transcriptional activator (AAC74385.1); Blastp hit to AAC74385.1 (330 aa), 86% identity in aa 6 - 330" /codon_start=1 /transl_table=11 /product="phage shock protein operon transcriptional activator" /protein_id="NP_460649.1" /db_xref="GI:16765034" /db_xref="GeneID:1253209" /translation="MAEFKDNLLGEANRFLEVLEQVSRLAPLDKPVLIIGERGTGKEL IANRLHYLSSRWQGPLISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGG TLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVKEGT FRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELRLPLFPGFTDRAKETLL HYAWPGNVRELKNVVERSVYRHGSSEQPLDEIVIDPFQRHPAEPPAPALPAASVTPDL PLKLREFQLQQEKALLQRSLQQAKFNQKRAADLLALTYHQFRALLKKHQL" gene 1783672..1785321 /gene="sapA" /locus_tag="STM1692" /db_xref="GeneID:1253210" CDS 1783672..1785321 /gene="sapA" /locus_tag="STM1692" /note="periplasm; peptide transport periplasmic protein SAPA precursor. (SW:SAPA_SALTY)" /codon_start=1 /transl_table=11 /product="peptide ABC transporter substrate-binding protein SapA" /protein_id="NP_460650.1" /db_xref="GI:16765035" /db_xref="GeneID:1253210" /translation="MRLVLSSLIVIAGLLSSQATAATAPEQTASADIRDSGFVYCVSG QVNTFNPQKASSGLIVDTLAAQLYDRLLDVDPYTYRLVPELAESWEVLDNGATYRFHL RRDVSFQKTAWFTPTRKLNADDVVFTFQRIFDRRHPWHNINGSSFPYFDSLQFADNVK SVRKLDNNTVEFRLTQPDASFLWHLATHYASVMSAEYAAQLSRKDRQELLDRQPVGTG PFQLSEYRAGQFIRLQRHDGFWRGKPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPA ASQLTILRDDPRLRLTLRPGMNIAYLAFNTDKPPLNNPAVRHALALSINNQRLMQSIY YGTAETAASILPRASWAYDNDAKITEYNPQKSREQLKALGIENLTLHLWVPTSSQAWN PSPLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMNHDLTLSGWATDSNDPDSFF RPLLSCAAINSQTNFAHWCNPEFDSVLRKALSSQQLASRIEAYEEAQNILEKELPILP LASSLRLQAYRYDIKGLVLSPFGNASFAGVSREKHEEVKKP" gene 1785304..1786283 /gene="sapB" /locus_tag="STM1693" /db_xref="GeneID:1253211" regulatory 1785304..1785309 /regulatory_class="ribosome_binding_site" /gene="sapB" /locus_tag="STM1693" /note="putative RBS for sapB; RegulonDB:STMS1H001878" CDS 1785318..1786283 /gene="sapB" /locus_tag="STM1693" /note="membrane; peptide transport system permease protein SAPB. (SW:SAPB_SALTY)" /codon_start=1 /transl_table=11 /product="antimicrobial peptide ABC transporter permease SapB" /protein_id="NP_460651.1" /db_xref="GI:16765036" /db_xref="GeneID:1253211" /translation="MIIFTLRRLLLLLVTLFFLTFIGFSLSYFTPHAPLQGASLWNAW VFWFNGLLHWDFGVSSINGQLISEQLKEVFPATMELCILAFGFALMVGIPVGMLAGVT RSKWPDRFISALALLGFSIPVFWLALLLTLFFSLTLGWLPVSGRFDLLYEVKPVTGFA IIDAWISDSPWRDEMVMSAIRHMVLPVLTLSVAPTTEVIRLMRISTIEVYDQNYVKAA ATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLIHAI RQQDYAAISAGVMVIGSLVIVVNVISDILGAMANPLKHKEWYALR" gene 1786260..1787160 /gene="sapC" /locus_tag="STM1694" /db_xref="GeneID:1253212" regulatory 1786260..1786265 /regulatory_class="ribosome_binding_site" /gene="sapC" /locus_tag="STM1694" /note="putative RBS for sapC; RegulonDB:STMS1H001879" CDS 1786270..1787160 /gene="sapC" /locus_tag="STM1694" /note="membrane; peptide transport system permease protein SAPC. (SW:SAPC_SALTY)" /codon_start=1 /transl_table=11 /product="antimicrobial peptide ABC transporter permease SapC" /protein_id="NP_460652.1" /db_xref="GI:16765037" /db_xref="GeneID:1253212" /translation="MPYDSVYSEKRPPGTLRTAWRKFYSDAPAMVGLYGCAGLALLCI FGGWIAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGTDDLGRDVLSRLLSGAAPTVGGA FIVTLAATLCGLVLGVVAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPHLSH AMFAVWLALLPRMVRSVYSMVHDELEKEYVIAARLDGATTLNILWFAILPNITAGLVT EITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAITLS VLLVNLLGDGIRRAIIAGVE" gene 1787152..1788152 /gene="sapD" /locus_tag="STM1695" /db_xref="GeneID:1253213" regulatory 1787152..1787157 /regulatory_class="ribosome_binding_site" /gene="sapC" /locus_tag="STM1694" /note="putative RBS for sapD; RegulonDB:STMS1H001880" CDS 1787160..1788152 /gene="sapD" /locus_tag="STM1695" /note="atp-binding; peptide transport system atp-binding protein SAPD. (SW:SAPD_SALTY)" /codon_start=1 /transl_table=11 /product="peptide ABC transporter ATP-binding protein" /protein_id="NP_460653.1" /db_xref="GI:16765038" /db_xref="GeneID:1253213" /translation="MPLLDIRNLTIEFKTSEGWVKAVDRVSMTLSEGEIRGLVGESGS GKSLIAKAICGVAKDNWRVTADRMRFDDIDLLRLSSRERRKLVGHNVSMIFQEPQSCL DPSERVGRQLMQNIPAWTYKGRWWQRLGWRKRRAIELLHRVGIKDHKDAMRSFPYELT DGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHD LQMLSQWADKINVLYCGQTVETAPSKDLVTMPHHPYTQALIRAIPDFGSAMPHKSRLN TLPGAIPLLEQLPIGCRLGPRCPYAQRECIITPRLTGAKNHLYACHFPLNMERE" gene 1788138..1788960 /gene="sapF" /locus_tag="STM1696" /db_xref="GeneID:1253214" regulatory 1788138..1788143 /regulatory_class="ribosome_binding_site" /gene="sapF" /locus_tag="STM1696" /note="putative RBS for sapF; RegulonDB:STMS1H001881" CDS 1788154..1788960 /gene="sapF" /locus_tag="STM1696" /note="atp-binding; peptide transport system atp-binding protein SAPF. (SW:SAPF_SALTY)" /codon_start=1 /transl_table=11 /product="peptide ABC transporter ATP-binding protein" /protein_id="NP_460654.1" /db_xref="GI:16765039" /db_xref="GeneID:1253214" /translation="MVETLLEVRNLSKTFRYRTGWFRRQTVDAVKPLSFTLRERQTLA IIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHYGDYSFRSQRIRMIFQDPSTSLN PRQRISQILDFPLRLNTDLEPEQRRKQIVETMRMVGLLPDHVSYYPHMLAPGQKQRLG LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHIS DQVLVMHQGEVVERGSTADVLASPLHELTRRLIAGHFGEALTADAWRKDR" gene complement(1789089..1789692) /locus_tag="STM1697" /db_xref="GeneID:1253215" CDS complement(1789089..1789685) /locus_tag="STM1697" /note="similar to E. coli orf, hypothetical protein (AAC74777.1); Blastp hit to AAC74777.1 (237 aa), 29% identity in aa 17 - 189" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase/phosphodiesterase domain 2" /protein_id="NP_460655.1" /db_xref="GI:16765040" /db_xref="GeneID:1253215" /translation="MRYFFMAEPIRAMEGDLLGVEITTHFASSPARPLHPEFVISSWD NSQKRRFLLDLLRTIAAKHGWFLRHGLFCIVNIDRGMAQLVLQDKDIRALLHAMLFVE LQVAEHFSCQDNALIDPLIHALHKQPNPLWLGDLGVGNATAAPLVCGCFSGVKLDRSF FVSQIEKMTFPLLVKHIRRVIVTRSWWGARKTHAICRC" regulatory complement(1789687..1789692) /regulatory_class="ribosome_binding_site" /locus_tag="STM1697" /note="putative RBS for STM1697; RegulonDB:STMS1H001882" gene complement(1790151..1791531) /locus_tag="STM1698" /db_xref="GeneID:1253216" CDS complement(1790151..1791524) /locus_tag="STM1698" /codon_start=1 /transl_table=11 /product="secreted effector kinase SteC" /protein_id="NP_460656.1" /db_xref="GI:16765041" /db_xref="GeneID:1253216" /translation="MPFTFQIGNHSCQISERYLRDIIDNKREHVFSTCEKFIDFFRNI FTRRSLISDYREIYNLLCQKKEHPDIKGPFSPGPFSKRDEDCTRWRPLLGYIKLIDAS RPETIDKYTVEVLAHQENMLLLQMFYDGVLVTETECSERCVDFLKETMFNYNNGEITL AALGNDNLPPSEAGSNGIYEAFEQRLIDFLTTPATASGYESGAIDQTDASQPAAIEAF INSPEFQKNIRMRDIEKNKIGSGSYGTVYRLHDDFVVKIPVNERGIKVDVNSPEHRNC HPDRVSKYLNMANDDKNFSRSAIMNINGKDVTVLVSKYIQGQEFDVEDEDNYRMAEAL LKSRGVYMHDINILGNILVKEGVLFFVDGDQIVLSQESRQQRSVSLATRQLEEQIKAH HMIKLKRAETEGNTEDVEYYKSLITDLDALIGEEEQTPAPGRRFKLAAPEEGTLVAKV LKDELKK" regulatory complement(1791526..1791531) /regulatory_class="ribosome_binding_site" /locus_tag="STM1698" /note="putative RBS for STM1698; RegulonDB:STMS1H001883" gene 1791559..1791738 /locus_tag="STM1698A" /db_xref="GeneID:1253217" CDS 1791559..1791738 /locus_tag="STM1698A" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460657.1" /db_xref="GI:16765042" /db_xref="GeneID:1253217" /translation="MQTYKNLICNYCNHLISKIFHIQYYSASINRENLQHLKKKLFLL SICWLKLHVHNIANR" gene 1791708..1792012 /gene="ycjE" /locus_tag="STM1699" /db_xref="GeneID:1253218" regulatory 1791708..1791713 /regulatory_class="ribosome_binding_site" /locus_tag="STM1698A" /note="putative RBS for ycjE; RegulonDB:STMS1H001884" CDS 1791713..1792012 /gene="ycjE" /locus_tag="STM1699" /note="hypothetical 10.4 Kda protein in fabI/envM 5'region. (SW:YCJE_SALTY)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460658.1" /db_xref="GI:16765043" /db_xref="GeneID:1253218" /translation="MSITSLIGEVNHLDEYSGFLQNLYLSGGKRIAIVLAIRPGVSGW MRRTLHQLVYCTVGPVPLDSLICQFGPGECSKSSGTSLPCGFRTSPAGDSGGKIA" gene 1792117..1792918 /gene="fabI" /locus_tag="STM1700" /db_xref="GeneID:1253219" regulatory 1792117..1792122 /regulatory_class="ribosome_binding_site" /gene="fabI" /locus_tag="STM1700" /note="putative RBS for fabI; RegulonDB:STMS1H001885" CDS 1792130..1792918 /gene="fabI" /locus_tag="STM1700" /EC_number="1.3.1.9" /note="enoyl-[acyl-carrier-protein] reductase [NADH]. (SW:FABI_SALTY)" /codon_start=1 /transl_table=11 /product="enoyl-[acyl-carrier-protein] reductase" /protein_id="NP_460659.1" /db_xref="GI:16765044" /db_xref="GeneID:1253219" /translation="MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL KGRVEEFAAQLGSSIVLPCDVAEDASIDAMFAELGNVWPKFDGFVHSIGFAPGDQLDG DYVNAVTREGFKVAHDISSYSFVAMAKACRTMLNPGSALLTLSYLGAERAIPNYNVMG LAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRR TVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIAAMNELELK" gene 1793118..1794098 /gene="yciW" /locus_tag="STM1701" /db_xref="GeneID:1253220" CDS 1793118..1794098 /gene="yciW" /locus_tag="STM1701" /note="similar to E. coli putative oxidoreductase (AAC74369.1); Blastp hit to AAC74369.1 (401 aa), 51% identity in aa 27 - 350" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460660.1" /db_xref="GI:16765045" /db_xref="GeneID:1253220" /translation="MEQCRKAGKSHWYHETQSTMSSQTPLSLMPEAAYVNDRFLLDLT VAETALTPFESWLKPARQLADVLFPRTVLNDRLHTFSAYERMSTALTAAQVFGVQRLC RYYAARLAPLPGPDASRESNQRLAQITQYARQLAGSPSVINTRAREQLAEVGLTARDT VLINQIIGFIGFQARVAAIFQAFCRLPVRELPGQEMQRFARAARFQNPQTIWRPAASL VEYPPAHTKVRRQYSSSQCQMMAPVLMRDPSSFALLERILTSTLHTASPPSLLPLITL LTSRINGSAACFNEQATQPGAWRRAVITLRQEDDDIARWELEPALTQAIQ" gene 1794158..1796274 /gene="rnb" /locus_tag="STM1702" /db_xref="GeneID:1253221" regulatory 1794158..1794166 /regulatory_class="minus_35_signal" /gene="rnb" /locus_tag="STM1702" /note="putative -35_signal for rnb; RegulonDB:STMLTH004498" regulatory 1794185..1794193 /regulatory_class="minus_10_signal" /gene="rnb" /locus_tag="STM1702" /note="putative -10_signal for rnb; RegulonDB:STMLTH004498" regulatory 1794333..1794338 /regulatory_class="ribosome_binding_site" /gene="rnb" /locus_tag="STM1702" /note="putative RBS for rnb; RegulonDB:STMS1H001886" CDS 1794340..1796274 /gene="rnb" /locus_tag="STM1702" /EC_number="3.1.13.1" /note="mRNA degradation; similar to E. coli RNase II, mRNA degradation (AAC74368.1); Blastp hit to AAC74368.1 (644 aa), 90% identity in aa 1 - 644" /codon_start=1 /transl_table=11 /product="exoribonuclease II" /protein_id="NP_460661.1" /db_xref="GI:16765046" /db_xref="GeneID:1253221" /translation="MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSY FIPPPQMKKVMHGDRIVAVIHTEKERESAEPEELIEPFLTRFVGKVQGKNDRLSIVPD HPLLKDAIPCRAARGVQHEFKEGDWAVAEMRRHPLKGDRSFYADLTQYITFADDHFVP WWVTLARHNLEKEAPNGVATEMLDEGLERQDLTALNFVTIDSASTEDMDDALYAEELA DGRLQLTVAIADPTAWIAEGSKLDNTAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN EVRPALACRMIIAADGTIDDDIAFFAATIESKAKLAYDNVSDWLENNGTWQPDNEGIA QQIRLLHRICLSRSEWRHHHALVFKDRPDYRFVLGEKGEVLDIVAEPRRIANRIVEES MIAANLCAARVLRDKLGFGIYNVHTGFDPANADALAALLKTHGLHVDAEEVLTLEGFC KLRRELDAQPSGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINH RLLKAVIKGEAIARPQEDITQQMAERRRLNRMAERDVGDWLYARFLNDKAGTNTRFAA EIIDVSRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVI DVTIAEVRMETRSIIARPAA" gene 1796527..1798518 /gene="yciR" /locus_tag="STM1703" /db_xref="GeneID:1253222" regulatory 1796527..1796532 /regulatory_class="ribosome_binding_site" /gene="yciR" /locus_tag="STM1703" /note="putative RBS for yciR; RegulonDB:STMS1H001887" CDS 1796536..1798518 /gene="yciR" /locus_tag="STM1703" /note="diguanylate cyclase/phosphodiesterase domain 1; Diguanylate cyclase/phosphodiesterase domain 2; similar to E. coli orf, hypothetical protein (AAC74367.1); Blastp hit to AAC74367.1 (661 aa), 79% identity in aa 1 - 657" /codon_start=1 /transl_table=11 /product="putative PAS/PAC domain protein" /protein_id="NP_460662.1" /db_xref="GI:16765047" /db_xref="GeneID:1253222" /translation="MMKQIQEQTALNPLHSHWRLADDRNVLYLSPTGETDAEKTVELS PEQAGRIREITAITSSLLITLLIEKQVTAVHLVGRKINNREWAGSLATWPDTPAVSPT QAQELSFAEQIVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMSR REAVASRHYIENFFRNGNAYEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFLICAGT DITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFKK INDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRI LTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQFCVF SPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWRGEVRSLEALVRWQSPERGLI PPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGINLRVAVNFSARQLADQTLFT ALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAF LTKNGVNERQGFLFAKPMPAVSFERWYKRYQTKKMR" gene 1798906..1799658 /gene="yciT" /locus_tag="STM1704" /db_xref="GeneID:1253223" CDS 1798906..1799658 /gene="yciT" /locus_tag="STM1704" /note="similar to E. coli putative DEOR-type transcriptional regulator (AAC74366.1); Blastp hit to AAC74366.1 (249 aa), 82% identity in aa 1 - 247" /codon_start=1 /transl_table=11 /product="DeoR family transcriptional regulator" /protein_id="NP_460663.1" /db_xref="GI:16765048" /db_xref="GeneID:1253223" /translation="MNSRQQSILQMVVDKGQMSVAELAKITGVSEVTIRQDLNTLEKQ SYLRRAHGFAVSLESDDVETRMMTNYTLKRRLAEFAASLVSPGESVFIENGSSNALLA RTLAEQKDVTIITVSSYIAHLLKETPCEVILLGGIYQKKSESMVGPLTRQFIHQVHFS KAFIGIDGWQADTGFTGRDMMRSDVVNAVLEKGSEAIVLTDSSKFGCVHPYPLGPLSR FHRVITDSKISASDQMQLEHAGLLVNVIGSSV" gene 1799843..1800135 /gene="osmB" /locus_tag="STM1705" /db_xref="GeneID:1253224" regulatory 1799843..1799851 /regulatory_class="minus_35_signal" /gene="osmB" /locus_tag="STM1705" /note="putative -35_signal for osmB; RegulonDB:STMLTH004499" regulatory 1799869..1799877 /regulatory_class="minus_10_signal" /gene="osmB" /locus_tag="STM1705" /note="putative -10_signal for osmB; RegulonDB:STMLTH004499" regulatory 1799903..1799908 /regulatory_class="ribosome_binding_site" /gene="osmB" /locus_tag="STM1705" /note="putative RBS for osmB; RegulonDB:STMS1H001888" CDS 1799917..1800135 /gene="osmB" /locus_tag="STM1705" /note="osmotically inducible lipoprotein B. (SW:OSMB_SALTY)" /codon_start=1 /transl_table=11 /product="osmotically inducible lipoprotein" /protein_id="NP_460664.1" /db_xref="GI:16765049" /db_xref="GeneID:1253224" /translation="MFMTSKKMAAAVLAITVAMSLSACSNWSKRDRNTAIGAGAGALG GAVLTDGSTLGTLGGAAVGGVIGHQVGK" gene complement(1800255..1800589) /gene="yciH" /locus_tag="STM1706" /db_xref="GeneID:1253225" CDS complement(1800255..1800581) /gene="yciH" /locus_tag="STM1706" /note="protein YCIH. (SW:YCIH_SALTY)" /codon_start=1 /transl_table=11 /product="translation initiation factor" /protein_id="NP_460665.1" /db_xref="GI:16765050" /db_xref="GeneID:1253225" /translation="MSDSNSRLVYSTQTGRIEEPKTAPVRPKGDGIVRIQRQTSGRKG KGVCLITGIEMNDAELTKLAAELKKKCGCGGAVKEGIIEIQGDKRDLIKSLLEAKGMK VKLAGG" gene complement(1800581..1801329) /gene="pyrF" /locus_tag="STM1707" /db_xref="GeneID:1253226" CDS complement(1800581..1801318) /gene="pyrF" /locus_tag="STM1707" /EC_number="4.1.1.23" /note="orotidine 5'-phosphate decarboxylase. (SW:DCOP_SALTY)" /codon_start=1 /transl_table=11 /product="orotidine-5'-phosphate decarboxylase" /protein_id="NP_460666.1" /db_xref="GI:16765051" /db_xref="GeneID:1253226" /translation="MTFTASSSSCAITESPVVVALDYHERDKALAFVDKIDPRDCRLK VGKEMFTLFGPQLVRDLQQRGFDVFLDLKFHDIPNTTARAVAAAADLGVWMVNVHASG GARMMAAARDALAPFSKDAPLLIAVTVLTSMETSDLHDLGVTLSPAEHAERLARLTQQ CGLDGVVCSAQEAVRFKQAFGAAFKLVTPGIRPAGSEAGDQRRIMTPEQALSAGVDYM VIGRPVTQSVDPAQTLKDINASLKREA" regulatory complement(1800584..1800589) /regulatory_class="ribosome_binding_site" /gene="yciH" /locus_tag="STM1706" /note="putative RBS for yciH; RegulonDB:STMS1H001889" regulatory complement(1801324..1801329) /regulatory_class="ribosome_binding_site" /gene="pyrF" /locus_tag="STM1707" /note="putative RBS for pyrF; RegulonDB:STMS1H001890" gene complement(1801509..1802693) /gene="yciM" /locus_tag="STM1708" /db_xref="GeneID:1253227" CDS complement(1801509..1802678) /gene="yciM" /locus_tag="STM1708" /note="similar to E. coli putative heat shock protein (AAC74362.1); Blastp hit to AAC74362.1 (389 aa), 93% identity in aa 1 - 388" /codon_start=1 /transl_table=11 /product="lipopolysaccharide assembly protein LapB" /protein_id="NP_460667.1" /db_xref="GI:16765052" /db_xref="GeneID:1253227" /translation="MLELLFLLLPVAAAYGWYMGRRSAQQTKQDEANRLSRDYVAGVN FLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLT YEQRLLAVQQLGRDYMAAGLYDRAEDMFNQLTDETEFRVGALQQLLQIYQLTSDWQKA IEVAERLVKLGKDKQRIEIAHFYCELALQQMGNDDMDRAMALLKKGAAADKNSARVSI MMGRVYMARGDYAKAVESLQRVIVQDKELVSETLEMLQTCYQQLGKNAEWAEFLRRAV EENTGAGAELMLADILEAREGSDAAQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRA KESLMVLRDMVGEQVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGQ" gene complement(1802685..1803005) /gene="yciS" /locus_tag="STM1709" /db_xref="GeneID:1253228" CDS complement(1802685..1802993) /gene="yciS" /locus_tag="STM1709" /note="similar to E. coli orf, hypothetical protein (AAC74361.1); Blastp hit to AAC74361.1 (102 aa), 92% identity in aa 1 - 102" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460668.1" /db_xref="GI:16765053" /db_xref="GeneID:1253228" /translation="MKYLLIFLLVLAIFVISVTLGAQNDQQVTFNYLLAQGEYRISTL LAVLFAVGFAIGWLICGLFWLRVRVSLARAERKIKRLENKLSPATDVAVPADSSVVKE " regulatory complement(1802688..1802693) /regulatory_class="ribosome_binding_site" /gene="yciS" /locus_tag="STM1709" /note="putative RBS for yciM; RegulonDB:STMS1H001891" regulatory complement(1803000..1803005) /regulatory_class="ribosome_binding_site" /gene="yciS" /locus_tag="STM1709" /note="putative RBS for yciS; RegulonDB:STMS1H001892" gene complement(1803143..1803918) /gene="pgpB" /locus_tag="STM1710" /db_xref="GeneID:1253229" CDS complement(1803143..1803907) /gene="pgpB" /locus_tag="STM1710" /EC_number="3.1.3.27" /note="similar to E. coli non-essential phosphatidylglycerophosphate phosphatase, membrane bound (AAC74360.1); Blastp hit to AAC74360.1 (254 aa), 82% identity in aa 1 - 254" /codon_start=1 /transl_table=11 /product="phosphatidylglycerophosphatase B" /protein_id="NP_460669.1" /db_xref="GI:16765054" /db_xref="GeneID:1253229" /translation="MLSIARRTAAGAALLLIMPLAVWVSGWQWQPGHQVWWLKTLFWI TETVTKPWGVITHVILCGWFLWCLRFRLRAAIMLFAILGGAIIVGQGVKSWVKERVQE PRPFVVWLEKTHHIPVDEFYTLKRTERGHLVKEQLAGQQNIPVFLRQHWQKETGFAFP SGHTMFAASWALLAVGLLWPRRRTFTIAFLLVWATGVMGSRLLLGMHWPRDLVVATLI SWLLVTLATWLAQRICGPLMPPREEAQEIAEREQES" regulatory complement(1803913..1803918) /regulatory_class="ribosome_binding_site" /gene="pgpB" /locus_tag="STM1710" /note="putative RBS for pgpB; RegulonDB:STMS1H001893" gene 1804091..1804693 /gene="ribA" /locus_tag="STM1711" /db_xref="GeneID:1253230" regulatory 1804091..1804096 /regulatory_class="ribosome_binding_site" /gene="ribA" /locus_tag="STM1711" /note="putative RBS for ribA; RegulonDB:STMS1H001894" CDS 1804103..1804693 /gene="ribA" /locus_tag="STM1711" /EC_number="3.5.4.25" /note="similar to E. coli GTP cyclohydrolase II (AAC74359.1); Blastp hit to AAC74359.1 (196 aa), 95% identity in aa 1 - 196" /codon_start=1 /transl_table=11 /product="GTP cyclohydrolase II" /protein_id="NP_460670.1" /db_xref="GI:16765055" /db_xref="GeneID:1253230" /translation="MQLKRVAEAKLPTPLGDFLMVGFEELATGHDHAALVFGDISGKT PVLARVHSECLTGDALFSLRCDCGFQLEAALTHIAEEGRGILIYHRQEGRNIGLLNKI RAYALQDQGYDTVEANHQLGFAADERDFTLCADMFKLLGVDEVRLLTNNPKKVEILTE AGINIVERVPLIVGRNPNNEHYLDTKAAKMGHLLSK" gene complement(1804749..1807432) /gene="acnA" /locus_tag="STM1712" /db_xref="GeneID:1253231" CDS complement(1804749..1807424) /gene="acnA" /locus_tag="STM1712" /EC_number="4.2.1.3" /note="similar to E. coli aconitate hydrase 1 (AAC74358.1); Blastp hit to AAC74358.1 (891 aa), 92% identity in aa 1 - 890" /codon_start=1 /transl_table=11 /product="aconitate hydratase 1" /protein_id="NP_460671.1" /db_xref="GI:16765056" /db_xref="GeneID:1253231" /translation="MSSTLREASKDTLQAKDKTYHYYSLPLAAKSLGDIARLPKSLKV LLENLLRWQDGESVTDEDIQALAGWLKNAHADREIAWRPARVLMQDFTGVPAVVDLAA MREAVKRLGGDTSKVNPLSPVDLVIDHSVTVDHFGDDDAFEENVRLEMERNHERYMFL KWGKQAFSRFSVVPPGTGICHQVNLEYLGKAVWSELQDGEWIAYPDSLVGTDSHTTMI NGLGVLGWGVGGIEAEAAMLGQPVSMLIPDVVGFKLTGKLREGITATDLVLTVTQMLR KHGVVGKFVEFYGDGLDSLPLADRATIANMSPEYGATCGFFPIDAITLEYMRLSGRSD DLVELVETYAKAQGMWRNPGDEPVFTSTLELDMGDVEASLAGPKRPQDRVALGDVPKA FAASAELELNTAQRDRQPVDYTMNGQPYQLPDGAVVIAAITSCTNTSNPSVLMAAGLL AKKAVTLGLKRQPWVKASLAPGSKVVSDYLAQAKLTPYLDELGFNLVGYGCTTCIGNS GPLPEPIETAIKKGDLTVGAVLSGNRNFEGRIHPLVKTNWLASPPLVVAYALAGNMNI NLATDPLGYDRKGDPVYLKDIWPSAQEIARAVELVSSDMFRKEYAEVFEGTEEWKSIQ VESSDTYGWQSDSTYIRLSPFFDEMQAQPAPVKDIHGARILAMLGDSVTTDHISPAGS IKPDSPAGRYLQNHGVERKDFNSYGSRRGNHEVMMRGTFANIRIRNEMLPGVEGGMTR HLPGTEAMSIYDAAMLYQQEKTPLAVIAGKEYGSGSSRDWAAKGPRLLGIRVVIAESF ERIHRSNLIGMGILPLEFPQGVTRKTLGLTGEEVIDIADLQNLRPGATIPVTLTRSDG SKETVPCRCRIDTATELTYYQNDGILHYVIRNMLN" regulatory complement(1807427..1807432) /regulatory_class="ribosome_binding_site" /gene="acnA" /locus_tag="STM1712" /note="putative RBS for acnA; RegulonDB:STMS1H001895" gene complement(1808401..1809569) /gene="cysB" /locus_tag="STM1713" /db_xref="GeneID:1253232" CDS complement(1808401..1809375) /gene="cysB" /locus_tag="STM1713" /note="LysR family; cys regulon transcriptional activator. (SW:CYSB_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional regulator CysB" /protein_id="NP_460672.1" /db_xref="GI:16765057" /db_xref="GeneID:1253232" /translation="MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDEL GIQIFARSGKHLTQVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHT QARYALPGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVM LPCYHWNRSIVVTPDHPLAATSSVTIEALAQYPLVTYTFGFTGRSELDTAFNRAGLTP RIVFTATDADVIKTYVRLGLGVGVIASMAVDPLADPDLVRIDAHDIFSHSTTKIGFRR STFLRSYMYDFIQRFAPHLTRDVVDTAVALRSNEEIEAMFQDIKLPEK" regulatory complement(1809384..1809389) /regulatory_class="ribosome_binding_site" /gene="cysB" /locus_tag="STM1713" /note="putative RBS for cysB; RegulonDB:STMS1H001896" regulatory complement(1809545..1809553) /regulatory_class="minus_10_signal" /gene="cysB" /locus_tag="STM1713" /note="putative -10_signal for cysB; RegulonDB:STMLTH004500" regulatory complement(1809561..1809569) /regulatory_class="minus_35_signal" /gene="cysB" /locus_tag="STM1713" /note="putative -35_signal for cysB; RegulonDB:STMLTH004500" gene complement(1809786..1812392) /gene="topA" /locus_tag="STM1714" /db_xref="GeneID:1253233" CDS complement(1809786..1812383) /gene="topA" /locus_tag="STM1714" /EC_number="5.99.1.2" /note="similar to E. coli DNA topoisomerase type I, omega protein (AAC74356.1); Blastp hit to AAC74356.1 (865 aa), 96% identity in aa 1 - 865" /codon_start=1 /transl_table=11 /product="DNA topoisomerase I" /protein_id="NP_460673.1" /db_xref="GI:16765058" /db_xref="GeneID:1253233" /translation="MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSAA KKSADSTSTKTAKKPKKDERGALVNRMGVDPWHNWDAHYEVLPGKEKVVSELKQLAEK ADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQAFEQPGELNIN RVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEE FWEIDANTTTPSGEALPLQVTHQNDKPFRPVNREQTLAAVSLLEKARYSVLEREDKPT SSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNM VRGYIGDNFGKKYLPDNPNQYASKENSQEAHEAIRPSDVAVMAESLKDMEADAQKLYQ LIWRQFVACQMTPAQYDSTTLTVGAGEFRLKARGRILRFDGWTKVMPALRKGDEDRTL PAVNKGDALTLLELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRG YVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMEDSLDQVANHQAEWKAVLDN FFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCPTCGRKMGIRTASTGVFLGCSGYAL SPKERCKTTINLVPENEVLNVLEGDDAETNALRAKRRCQKCGTAMDSYLIDPKRKLHV CGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHLKMGRFGKYMACTNDECKNTR KILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGIFLAANTFPKSRETRAPLVE ELYRFRDRLPEKLRYLADAPQQDPEGNKTVVRFSRKTKQQYVAAEKDGKATGWSAFFV DGKWVEGKK" regulatory complement(1812387..1812392) /regulatory_class="ribosome_binding_site" /gene="topA" /locus_tag="STM1714" /note="putative RBS for topA; RegulonDB:STMS1H001897" gene 1812774..1813037 /gene="yciN" /locus_tag="STM1715" /db_xref="GeneID:1253234" regulatory 1812774..1812779 /regulatory_class="ribosome_binding_site" /gene="yciN" /locus_tag="STM1715" /note="putative RBS for yciN; RegulonDB:STMS1H001898" CDS 1812786..1813037 /gene="yciN" /locus_tag="STM1715" /note="similar to E. coli orf, hypothetical protein (AAC74355.1); Blastp hit to AAC74355.1 (83 aa), 92% identity in aa 1 - 83" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460674.1" /db_xref="GI:16765059" /db_xref="GeneID:1253234" /translation="MHKETQPIDRETLLLEANKIIREHEDTMAGIVATGVTQRNGVLV FSGDYFLDEQGLPTPKSTAVFNMFKHLAHVLSEKYHLVD" gene complement(1813079..1814137) /gene="sohB" /locus_tag="STM1716" /db_xref="GeneID:1253235" CDS complement(1813079..1814125) /gene="sohB" /locus_tag="STM1716" /EC_number="3.4.21.-" /note="similar to E. coli putative protease (AAC74354.1); Blastp hit to AAC74354.1 (349 aa), 87% identity in aa 1 - 349" /codon_start=1 /transl_table=11 /product="protease SohB" /protein_id="NP_460675.1" /db_xref="GI:16765060" /db_xref="GeneID:1253235" /translation="MELLSEYGLFLAKIVTVVVAIAVIVLLIVNATQRKRQRGELRVT NLSEQYQEMKDDLAAALMDGHQQKLWHKAQKKKHKQEAKAAKAKAKLGDIATSDKPRV WVIDFKGSMDAHEVNALREEVTAVLAVAKPGDRAVVRLESPGGVVHGYGLAASQLQRL RDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPNFNRFLKSKDI DIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMRPALDIEQVATG EHWYGQQALEKGLVDEINTSDEVILGLMEGREVLNVRYMQRKKLIDRVTGSAAESADR LLLRWWQRGQKPLM" regulatory complement(1814132..1814137) /regulatory_class="ribosome_binding_site" /gene="sohB" /locus_tag="STM1716" /note="putative RBS for sohB; RegulonDB:STMS1H001899" gene 1814352..1815124 /gene="yciK" /locus_tag="STM1717" /db_xref="GeneID:1253236" regulatory 1814352..1814357 /regulatory_class="ribosome_binding_site" /gene="yciK" /locus_tag="STM1717" /note="putative RBS for yciK; RegulonDB:STMS1H001900" CDS 1814363..1815124 /gene="yciK" /locus_tag="STM1717" /note="similar to E. coli putative oxidoreductase (AAC74353.1); Blastp hit to AAC74353.1 (252 aa), 88% identity in aa 1 - 252" /codon_start=1 /transl_table=11 /product="YciK family oxidoreductase" /protein_id="NP_460676.1" /db_xref="GI:16765061" /db_xref="GeneID:1253236" /translation="MHYQPKQDLLQNRIILVTGASDGIGREAALTYARYGATVILLGR NEEKLRRVAQHIADEQHVQPQWFTLDLLTCTAEECRQVADRIAAHYPRLDGVLHNAGL LGEIGPMSEQDPQIWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA NWGAYATSKFATEGMMQVLADEYQNRSLRVNCINPGGTRTSMRASAFPTEDPQKLKTP ADIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGIAQ" gene 1815108..1815711 /gene="btuR" /locus_tag="STM1718" /db_xref="GeneID:1253237" regulatory 1815108..1815113 /regulatory_class="ribosome_binding_site" /gene="btuR" /locus_tag="STM1718" /note="putative RBS for btuR; RegulonDB:STMS1H001901" CDS 1815121..1815711 /gene="btuR" /locus_tag="STM1718" /EC_number="2.5.1.17" /note="cob(I)alamin adenosyltransferase. (SW:BTUR_SALTY)" /codon_start=1 /transl_table=11 /product="cob(I)yrinic acid a,c-diamide adenosyltransferase" /protein_id="NP_460677.1" /db_xref="GI:16765062" /db_xref="GeneID:1253237" /translation="MSDERYQQRQQKVKDRVDARVAQAQEERGIIIVFTGNGKGKTTA AFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADT AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITG RGCHRDILDLADTVSELRPVKHAFDAGVKAQMGIDY" gene complement(1815798..1816684) /gene="yciL" /locus_tag="STM1719" /db_xref="GeneID:1253238" CDS complement(1815798..1816673) /gene="yciL" /locus_tag="STM1719" /note="similar to E. coli orf, hypothetical protein (AAC74351.1); Blastp hit to AAC74351.1 (291 aa), 97% identity in aa 1 - 291" /codon_start=1 /transl_table=11 /product="23S rRNA pseudouridylate synthase" /protein_id="NP_460678.1" /db_xref="GI:16765063" /db_xref="GeneID:1253238" /translation="MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIATLGDRVEV TPGLKIRIDGHLISVKESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR WIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDESKLRDLSRGV QLEDGPAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDI PLPKGLPRGGWTELDLAQTNYLRGLVELPPETSSKVAVEKDRRRMKANQIRRAVKRHS QIAGGRRSGGRNNNG" regulatory complement(1816679..1816684) /regulatory_class="ribosome_binding_site" /gene="yciL" /locus_tag="STM1719" /note="putative RBS for yciL; RegulonDB:STMS1H001902" gene complement(1816774..1817403) /gene="yciO" /locus_tag="STM1720" /db_xref="GeneID:1253239" CDS complement(1816774..1817394) /gene="yciO" /locus_tag="STM1720" /note="similar to E. coli orf, hypothetical protein (AAC74349.1); Blastp hit to AAC74349.1 (218 aa), 93% identity in aa 13 - 218" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460679.1" /db_xref="GI:16765064" /db_xref="GeneID:1253239" /translation="MSQFFYIHPDNPQQRLINQAVDIVRKGGVIVYPTDSGYALGCKI EDKGAMERICRIRHLPDGHNFTLMCRDLSELSTYSYVDNVAFRLMKNNTPGNYTFILK GTKEVPRRLLQEKRKTIGLRVPSNPIALALLDTLGEPMLSTSLMLPGSDFTESDPEEI KDRLEKQVDLIIHGGYLGQQPTTVIDLTNDSPVVLREGVGDVTPFL" regulatory complement(1817398..1817403) /regulatory_class="ribosome_binding_site" /gene="yciO" /locus_tag="STM1720" /note="putative RBS for yciO; RegulonDB:STMS1H001903" gene complement(1817402..1818283) /gene="trpH" /locus_tag="STM1721" /db_xref="GeneID:1253240" CDS complement(1817402..1818283) /gene="trpH" /locus_tag="STM1721" /note="TRPH protein. (SW:TRPH_SALTY)" /codon_start=1 /transl_table=11 /product="phosphatase" /protein_id="NP_460680.1" /db_xref="GI:16765065" /db_xref="GeneID:1253240" /translation="MGAALSDTNYAVIYDLHSHTTASDGLLTPETLVHRAVEMRVGTL AITDHDTTAAIPAAREEISRSGLALNLIPGVEISTVWENHEIHIVGLNIDIAHPAMRD FLAQQTERRQARGRLIAERLEKAHIPGAWEGALRLANGGAVTRGHFARFLVECGKAAT MADVFKKYLARGKTGYVPPQWCTIEQAIDVIHHSGGKAVLAHPGRYDLSAKWLKRLVA HFADHHGDAMEVAQCQQSPNERTQLATLARQHHLWASLGSDFHQPCPWIELGRKLWLP AGVEGVWQTWEQPQISQ" gene 1818341..1818449 /gene="trpL" /locus_tag="STM1722" /db_xref="GeneID:1253241" regulatory 1818341..1818349 /regulatory_class="minus_35_signal" /gene="trpL" /locus_tag="STM1722" /note="putative -35_signal for trpL; RegulonDB:STMLTH004501" protein_bind 1818361..1818377 /gene="trpL" /locus_tag="STM1722" /note="putative binding site for TrpR, RegulonDB: STMS1H000379" /bound_moiety="TrpR" regulatory 1818365..1818373 /regulatory_class="minus_10_signal" /gene="trpL" /locus_tag="STM1722" /note="putative -10_signal for trpL; RegulonDB:STMLTH004501" regulatory 1818392..1818397 /regulatory_class="ribosome_binding_site" /gene="trpL" /locus_tag="STM1722" /note="putative RBS for trpL; RegulonDB:STMS1H001904" CDS 1818405..1818449 /gene="trpL" /locus_tag="STM1722" /note="trp operon leader peptide. (SW:LPW_SALTY)" /codon_start=1 /transl_table=11 /product="trp operon leader peptide" /protein_id="NP_448140.1" /db_xref="GI:1109557644" /db_xref="GeneID:1253241" /translation="MAATFALHGWWRTS" gene 1818534..1820106 /gene="trpE" /locus_tag="STM1723" /db_xref="GeneID:1253242" regulatory 1818534..1818539 /regulatory_class="ribosome_binding_site" /gene="trpE" /locus_tag="STM1723" /note="putative RBS for trpE; RegulonDB:STMS1H001905" CDS 1818544..1820106 /gene="trpE" /locus_tag="STM1723" /EC_number="4.1.3.27" /note="anthranilate synthase component I. (SW:TRPE_SALTY)" /codon_start=1 /transl_table=11 /product="anthranilate synthase subunit I" /protein_id="NP_460682.1" /db_xref="GI:16765067" /db_xref="GeneID:1253242" /translation="MQTPKPTLELLTCDAAYRENPTALFHQVCGDRPATLLLESADID SKDDLKSLLLVDSALRITALGDTVTIQALSDNGASLLPLLDTALPAGVENDVLPAGRV LRFPPVSPLLDEDARLCSLSVFDAFRLLQGVVNIPTQEREAMFFGGLFAYDLVAGFEA LPHLEAGNNCPDYCFYLAETLMVIDHQKKSTRIQASLFTASDREKQRLNARLAYLSQQ LTQPAPPLPVTPVPDMRCECNQSDDAFGAVVRQLQKAIRAGEIFQVVPSRRFSLPCPS PLAAYYVLKKSNPSPYMFFMQDNDFTLFGASPESSLKYDAASRQIEIYPIAGTRPRGR RADGTLDRDLDSRIELDMRTDHKELSEHLMLVDLARNDLARICTPGSRYVADLTKVDR YSYVMHLVSRVVGELRHDLDALHAYRACMNMGTLSGAPKVRAMQLIADAEGQRRGSYG GAVGYFTAHGDLDTCIVIRSALVENGIATVQAGAGIVLDSVPQSEADETRNKARAVLR AIATAHHAQETF" gene 1820092..1821701 /gene="trpD" /locus_tag="STM1724" /db_xref="GeneID:1253243" regulatory 1820092..1820097 /regulatory_class="ribosome_binding_site" /gene="trpE" /locus_tag="STM1723" /note="putative RBS for trpD; RegulonDB:STMS1H001906" CDS 1820106..1821701 /gene="trpD" /locus_tag="STM1724" /EC_number="4.1.3.27" /EC_number="2.4.2.18" /note="bifunctional: glutamine amidotransferase and phosphoribosylanthranilate transferase; anthranilate synthase component II ]. (SW:TRPG_SALTY)" /codon_start=1 /transl_table=11 /product="bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase" /protein_id="NP_460683.1" /db_xref="GI:16765068" /db_xref="GeneID:1253243" /translation="MADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRL ATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG EILHGKASSIEHDGQAMFAGLANPLPVARYHSLVGSNVPAGLTINAHFNGMVMAVRHD ADRVCGFQFHPESILTTQGARLLEQTLAWAQQKLEPTNTLQPILEKLYQAQTLTQQES HQLFSAVVRGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPEYLFADI VGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNAD KSRQALDELGVCFLFAPKYHTGLRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGV YSPELVLPIAETLRVLGYQRAAVVHSGGMDEVSLHAPTIVAELHDGEIKSYQLTAEDF GLTPYHQDQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRLHGQEDLKANA QTVLDVLRNGTAYDRVTALAARG" gene 1821643..1823063 /gene="trpC" /locus_tag="STM1725" /db_xref="GeneID:1253244" regulatory 1821643..1821651 /regulatory_class="minus_35_signal" /gene="trpC" /locus_tag="STM1725" /note="putative -35_signal for trpC; RegulonDB:STMLTH004502" regulatory 1821669..1821677 /regulatory_class="minus_10_signal" /gene="trpC" /locus_tag="STM1725" /note="putative -10_signal for trpC; RegulonDB:STMLTH004502" regulatory 1821694..1821699 /regulatory_class="ribosome_binding_site" /gene="trpC" /locus_tag="STM1725" /note="putative RBS for trpC; RegulonDB:STMS1H001907" CDS 1821705..1823063 /gene="trpC" /locus_tag="STM1725" /EC_number="4.1.1.48" /EC_number="5.3.1.24" /note="bifunctional; tryptophan biosynthesis protein TRPCF [includes: indole-3-glycerolphosphate synthase ]. (SW:TRPC_SALTY)" /codon_start=1 /transl_table=11 /product="bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase" /protein_id="NP_460684.1" /db_xref="GI:16765069" /db_xref="GeneID:1253244" /translation="MQTVLAKIVADKAIWVEARKQQQPLASFQNEIQPSTRHFYDALQ GARTAFILECKKASPSKGVIRDDFDPARIASIYQHYASAISVLTDEKYFQGSFDFLPV VSQSAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDEQYRQLSAVAHSLKMGV LTEVSNDEERERAIALGAKVVGINNRDLRDLSIDLNRTRQLAPKLGHGVTVISESGIN TYGQVRELSHFANGFLIGSALMAHDDLNAAVRRVLLGENKVCGLTRAQDAKAACDAGA IYGGLIFVPSSPRAVSVEQAREVISGAPLQYVGVFKNADIADVCQKAAVLSLSAVQLH GSEDQAYVNALREALPKQVQIWKALSVSDALPARDYHHVDKYIFDNGQGGSGQRFDWS LLQGQPLDNVLLAGGLAADNCVQAAQVGCAGLDFNSGVESQPGIKDARLLASVFQTLR AY" gene 1823062..1824266 /gene="trpB" /locus_tag="STM1726" /db_xref="GeneID:1253245" regulatory 1823062..1823067 /regulatory_class="ribosome_binding_site" /gene="trpB" /locus_tag="STM1726" /note="putative RBS for trpB; RegulonDB:STMS1H001908" CDS 1823073..1824266 /gene="trpB" /locus_tag="STM1726" /EC_number="4.2.1.20" /note="tryptophan synthase beta chain. (SW:TRPB_SALTY)" /codon_start=1 /transl_table=11 /product="tryptophan synthase subunit beta" /protein_id="NP_460685.1" /db_xref="GI:16765070" /db_xref="GeneID:1253245" /translation="MTTLLNPYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQ FADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMG KSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVH SGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILD KEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRV GIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALE AFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTVHDILK ARGEI" gene 1824253..1825072 /gene="trpA" /locus_tag="STM1727" /db_xref="GeneID:1253246" regulatory 1824253..1824258 /regulatory_class="ribosome_binding_site" /gene="trpA" /locus_tag="STM1727" /note="putative RBS for trpA; RegulonDB:STMS1H001909" CDS 1824266..1825072 /gene="trpA" /locus_tag="STM1727" /EC_number="4.2.1.20" /note="tryptophan synthase alpha chain. (SW:TRPA_SALTY)" /codon_start=1 /transl_table=11 /product="tryptophan synthase subunit alpha" /protein_id="NP_460686.1" /db_xref="GI:16765071" /db_xref="GeneID:1253246" /translation="MERYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAG ADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMY ANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADD DLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPE QVSAAVRAGAAGAISGSAIVKIIEKNLASPKQMLAELRSFVSAMKAASRA" gene 1825539..1825734 /gene="yciG" /locus_tag="STM1728" /db_xref="GeneID:1253247" regulatory 1825539..1825544 /regulatory_class="ribosome_binding_site" /gene="yciG" /locus_tag="STM1728" /note="putative RBS for yciG; RegulonDB:STMS1H001910" CDS 1825552..1825734 /gene="yciG" /locus_tag="STM1728" /note="similar to E. coli orf, hypothetical protein (AAC74341.1); Blastp hit to AAC74341.1 (78 aa), 88% identity in aa 20 - 78" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460687.1" /db_xref="GI:16765072" /db_xref="GeneID:1253247" /translation="MAEHRGGSGNFAENREKASEAGRKGGQHSGGNFKNDPQRASEAG KKGGQNSHGGRKSDNS" gene 1825808..1826327 /gene="yciF" /locus_tag="STM1729" /db_xref="GeneID:1253248" regulatory 1825808..1825813 /regulatory_class="ribosome_binding_site" /gene="yciF" /locus_tag="STM1729" /note="putative RBS for yciF; RegulonDB:STMS1H001911" CDS 1825824..1826327 /gene="yciF" /locus_tag="STM1729" /note="similar to E. coli putative structural proteins (AAC74340.1); Blastp hit to AAC74340.1 (166 aa), 86% identity in aa 1 - 166" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460688.1" /db_xref="GI:16765073" /db_xref="GeneID:1253248" /translation="MNIKTVEDLFIHLLSDTYSAEKQLTKALPKLARATSNEKLSQAF QSHLEETQGQIERIDQIVESESGIKLKRMKCVAMEGLIEEANEVIESTEKNEVRDAAL IAAAQKVEHYEIASYGTLATLAEQLGYSKALKLLKETLDEEKQTDLKLTDLAVSNVNK SAERKSK" gene 1826389..1826907 /gene="yciE" /locus_tag="STM1730" /db_xref="GeneID:1253249" regulatory 1826389..1826394 /regulatory_class="ribosome_binding_site" /gene="yciE" /locus_tag="STM1730" /note="putative RBS for yciE; RegulonDB:STMS1H001912" CDS 1826401..1826907 /gene="yciE" /locus_tag="STM1730" /note="similar to E. coli orf, hypothetical protein (AAC74339.1); Blastp hit to AAC74339.1 (168 aa), 85% identity in aa 1 - 168" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460689.1" /db_xref="GI:16765074" /db_xref="GeneID:1253249" /translation="MNYTEHYHDWLRDAHAMEKQAESMLESMASRIENYPDIKARIEQ HISETKHQITMLEEVLDRNGISRSVLKDSMSKMAAMGQSIGGMFPSDEIVKGSISGYV FEQFEIACYTSLLAAAKKAGDTASIPTIEAILKEEMQMADWLIKHIPQTTEQFLLRSE ADGVEAKK" gene 1826919..1827805 /locus_tag="STM1731" /db_xref="GeneID:1253250" regulatory 1826919..1826924 /regulatory_class="ribosome_binding_site" /locus_tag="STM1731" /note="putative RBS for STM1731; RegulonDB:STMS1H001913" CDS 1826927..1827805 /locus_tag="STM1731" /note="putative catalase (gi|7162108)" /codon_start=1 /transl_table=11 /product="Mn-containing catalase" /protein_id="NP_460690.1" /db_xref="GI:16765075" /db_xref="GeneID:1253250" /translation="MFRHVKQLQYTVRVSEPNPGLANLLLEQFGGPQGELAAACRYFT QGLSDDDAGRREMLMDIATEELSHLEIIGSLVGMLNKGAKGELAEGTENEAELYRSLT QNGNDSHITSLLYGGGPALTNSGGVPWTAAYIDTIGEVTADLRSNIAAEARAKIIYER LINLTDDPGVKDTLSFLMTREVAHQLSFEKALYSIRNNFPPGKLPPVEQYTDVYYNMS QGDDPRGSWNSDENFNYVAEPMPAVDGGDGLATVKLPREQMALLKAMAERTKSDPTVD PLTGAELGCGEPKEDK" gene complement(1827887..1828536) /gene="ompW" /locus_tag="STM1732" /db_xref="GeneID:1253251" CDS complement(1827887..1828525) /gene="ompW" /locus_tag="STM1732" /note="colicin S4 receptor; putative transporter; similar to E. coli putative outer membrane protein (AAC74338.1); Blastp hit to AAC74338.1 (212 aa), 88% identity in aa 1 - 212" /codon_start=1 /transl_table=11 /product="outer membrane protein OmpW" /protein_id="NP_460691.1" /db_xref="GI:16765076" /db_xref="GeneID:1253251" /translation="MKKFTVAALALTTLLSGSAFAHEAGEFFMRAGPATVRPTEGAGG TLGHLNGFDVSNNTQLGLTFTYMATDNIGVELLAATPFRHKVGTGATGDIATVHLLPP TLMAQWYFGDSSSKVRPYVGVGVNYTTFFDNDFNDNGKNAGLSDLSFKDSWGAAGQVG VDYLINRDWLIGASVWYMDIDTTANYKMGGVQHHDSVRLDPWVFMFSAGYRF" regulatory complement(1828531..1828536) /regulatory_class="ribosome_binding_site" /gene="ompW" /locus_tag="STM1732" /note="putative RBS for ompW; RegulonDB:STMS1H001914" gene 1828853..1829267 /locus_tag="STM1733" /db_xref="GeneID:1253252" regulatory 1828853..1828858 /regulatory_class="ribosome_binding_site" /locus_tag="STM1733" /note="putative RBS for STM1733; RegulonDB:STMS1H001915" CDS 1828863..1829267 /locus_tag="STM1733" /note="similar to E. coli putative ferredoxin (AAC73391.1); Blastp hit to AAC73391.1 (109 aa), 74% identity in aa 1 - 109" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460692.1" /db_xref="GI:16765077" /db_xref="GeneID:1253252" /translation="MSVLNPCMTCGACCAYFRVSFYWAEGDDASGRVPASLTEPVTPF LRCMAGTNQKQPHCKALIGTPGENVSCAIYENRPSTCREFSISGEGGEVNEACNRARA RYGLPPLYKDMLFHTTADAATVELSRVQLPAN" gene 1829282..1830036 /gene="yciC" /locus_tag="STM1734" /db_xref="GeneID:1253253" regulatory 1829282..1829287 /regulatory_class="ribosome_binding_site" /gene="yciC" /locus_tag="STM1734" /note="putative RBS for yciC; RegulonDB:STMS1H001916" CDS 1829293..1830036 /gene="yciC" /locus_tag="STM1734" /note="similar to E. coli orf, hypothetical protein (AAC74337.1); Blastp hit to AAC74337.1 (247 aa), 87% identity in aa 1 - 247" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460693.1" /db_xref="GI:16765078" /db_xref="GeneID:1253253" /translation="MSITAKSVYRDAGNFFRNQFITILLVSLLCAFITVVLGHAFSPS DAQIAQLSEGEHLAGSAGLFELVQNMTPEQQQILLRASAASTFSGLIGNAILAGGIIL MIQLVSAGHRVSALRAIGASAPALPKLFILIFLTTLLVQIGIMLIVVPGIIMAIVLAL APVMLVEEKMGVFAAMRSSMRLAWANMRLVAPAVIGWLLAKTLLLLFAPSFAVLTPNV GAVLANTLSNLISAVLLIYLFRLYMLIRQ" gene 1830080..1830632 /gene="yciB" /locus_tag="STM1735" /db_xref="GeneID:1253254" regulatory 1830080..1830085 /regulatory_class="ribosome_binding_site" /gene="yciB" /locus_tag="STM1735" /note="putative RBS for yciB; RegulonDB:STMS1H001917" CDS 1830093..1830632 /gene="yciB" /locus_tag="STM1735" /note="similar to E. coli orf, hypothetical protein (AAC74336.1); Blastp hit to AAC74336.1 (179 aa), 93% identity in aa 1 - 179" /codon_start=1 /transl_table=11 /product="septation protein A" /protein_id="NP_460694.1" /db_xref="GI:16765079" /db_xref="GeneID:1253254" /translation="MKQFLDFLPLVVFFAFYKLYDIYAATSALIVATAIVLIYSWVRY RKIEKMALITFVLVAVFGGLTLFFHNDEFIKWKVTVIYALFAGALLISQWVMKKPLIQ RMLGKELALPQQVWSKLNLAWALFFIACGLANIYIAFWLPQNIWVNFKVFGLTALTLI FTLLSGVYIYRHLPQEDKS" gene 1830793..1831194 /gene="yciA" /locus_tag="STM1736" /db_xref="GeneID:1253255" CDS 1830793..1831194 /gene="yciA" /locus_tag="STM1736" /note="putative acyl-coA thioester hydrolase YCIA. (SW:YCIA_SALTY)" /codon_start=1 /transl_table=11 /product="acyl-CoA esterase" /protein_id="NP_460695.1" /db_xref="GI:16765080" /db_xref="GeneID:1253255" /translation="MTTMDNTPQGELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAI LAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKRGTTSISINIEVWVKKVASE PIGQRYKATEALFIYVAVDPDGKPRPLPVQG" gene complement(1831254..1832052) /gene="tonB" /locus_tag="STM1737" /db_xref="GeneID:1253256" CDS complement(1831254..1831982) /gene="tonB" /locus_tag="STM1737" /note="energy transducer; uptake of iron, cyanocobalimin; sensitivity to phages, colicins; TONB protein. (SW:TONB_SALTY)" /codon_start=1 /transl_table=11 /product="transporter TonB" /protein_id="NP_460696.1" /db_xref="GI:16765081" /db_xref="GeneID:1253256" /translation="MTLDLPRRFPWPTLLSVGIHGAVVAGLLYTSVHQVIELPAPAQP ITVTMVSPADLEPPQAVQPPPEPVVEPEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP KPKPVKKVEEQPKREVKPAAPRPASPFENSAPVRPTSSTASATSKPAVSVPTGPRALS RNQPQYPARAQALRIEGRVKVKFDVTSAGRVENVQILSAQPANMFEREVKNAMRKWRY EAGKPGSGLVVNIIFRLNGTAQIE" regulatory complement(1831997..1832002) /regulatory_class="ribosome_binding_site" /gene="tonB" /locus_tag="STM1737" /note="putative RBS for tonB; RegulonDB:STMS1H001918" regulatory complement(1832028..1832036) /regulatory_class="minus_10_signal" /gene="tonB" /locus_tag="STM1737" /note="putative -10_signal for tonB; RegulonDB:STMLTH004503" protein_bind complement(1832036..1832056) /note="putative binding site for Fur, RegulonDB: STMS1H000190" /bound_moiety="Fur" regulatory complement(1832044..1832052) /regulatory_class="minus_35_signal" /gene="tonB" /locus_tag="STM1737" /note="putative -35_signal for tonB; RegulonDB:STMLTH004503" gene 1832192..1832502 /gene="yciI" /locus_tag="STM1738" /db_xref="GeneID:1253257" regulatory 1832192..1832197 /regulatory_class="ribosome_binding_site" /gene="yciI" /locus_tag="STM1738" /note="putative RBS for yciI; RegulonDB:STMS1H001919" CDS 1832206..1832502 /gene="yciI" /locus_tag="STM1738" /note="similar to E. coli orf, hypothetical protein (AAC74333.1); Blastp hit to AAC74333.1 (130 aa), 91% identity in aa 33 - 130" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460697.1" /db_xref="GI:16765082" /db_xref="GeneID:1253257" /translation="MLYVIYAQDNANSLEKRLSVRPAHLARLQLLHDEGRLLTAGPMP AVDSNDPGVAGFTGSTVIAEFESLEAAQSWADADPYVAAGVYAQVSVKPYKKIF" protein_bind complement(1832360..1832380) /note="putative binding site for Fur, RegulonDB: STMS1H000193" /bound_moiety="Fur" gene 1832846..1834322 /gene="cls" /locus_tag="STM1739" /db_xref="GeneID:1253258" regulatory 1832846..1832851 /regulatory_class="ribosome_binding_site" /gene="cls" /locus_tag="STM1739" /note="putative RBS for cls; RegulonDB:STMS1H001920" CDS 1832862..1834322 /gene="cls" /locus_tag="STM1739" /EC_number="2.7.8.-" /note="similar to E. coli cardiolipin synthase, a major membrane phospholipid; novobiocin sensitivity (AAC74331.1); Blastp hit to AAC74331.1 (486 aa), 94% identity in aa 1 - 486" /codon_start=1 /transl_table=11 /product="cardiolipin synthase" /protein_id="NP_460698.1" /db_xref="GI:16765083" /db_xref="GeneID:1253258" /translation="MTTFYTVVSWLVILGYWVLIAGVTLRILMKRRAVPSAMAWLLII YILPLVGIIAYLSVGELHLGKRRAERARAMWPSTAKWLNDLKACKHIFAQENSSVASS LFKLCERRQGIAGVKGNQLQLLTDSDDVMQALIRDIQLARHNIEMVFYIWQPGGMADQ VAESLMAAARRGIHCRLMLDSAGSVAFFRSPWAAMMRNAGIEVVEALKVNLMRVFLRR MDLRQHRKMVMIDNYIAYTGSMNMVDPRFFKQDAGVGQWVDLMARMEGPVATAMGIVY SCDWEIETGKRILPPPPDVNIMPFEQASGHTIHTIASGPGFPEDLIHQALLTATYAAR EYLIMTTPYFVPSDDLLHAICTAAQRGVDVSIILPRKNDSLLVGWASRAFFSELLAAG VKIYQFEGGLLHTKSVLVDGELSLVGTVNLDMRSLWLNFEITLVIDDTGFGADLAAVQ DDYISRSRLLDARLWVKRPLWQRITERLFYFFSPLL" gene 1834344..1834685 /gene="yciU" /locus_tag="STM1740" /db_xref="GeneID:2673771" regulatory 1834344..1834349 /regulatory_class="ribosome_binding_site" /gene="yciU" /locus_tag="STM1740" /note="putative RBS for yciU; RegulonDB:STMS1H001921" CDS 1834356..1834685 /gene="yciU" /locus_tag="STM1740" /note="similar to E. coli orf, hypothetical protein (AAC74330.1); Blastp hit to AAC74330.1 (135 aa), 92% identity in aa 27 - 135" /codon_start=1 /transl_table=11 /product="dsDNA-mimic protein" /protein_id="NP_448158.1" /db_xref="GI:1109557645" /db_xref="GeneID:2673771" /translation="MEMDLNNRLTEDETLEQAYDIFLELAADNLDPADIILFNLQFEE RGGAELFDPAEDWQEHIDFDLNPDFFAEVVIGLADTEDGEINDIFARVLLCREKDHKL CHILWRE" gene complement(1834733..1835575) /locus_tag="STM1741" /db_xref="GeneID:1253260" CDS complement(1834733..1835569) /locus_tag="STM1741" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_460700.1" /db_xref="GI:16765085" /db_xref="GeneID:1253260" /translation="MSLSLSSVRRRLYHNLFDLTTRSGRRFEGLCALFALLSVLVIFV ESGVGTEYHLTFDEWHIFVWLELCVTLIFTGEYLLRLFSWPEPAKYVFSFWGFIDLVT ILPLYVMWLWPEISLNYMFAWRAMRAIRVLRILKLLRFMPSLRVFWSAIISARHQLIL FYSFIAIVMIIFGALMYLIEGPKYGFTTLNASVYWAIVTVTTVGYGDITPHTPLGRIV ASVLILIGYSVIAIPTGLITTHMSSAFQKRHWQRKCPQCQQSQHEHSAQYCNRCGSKL PD" regulatory complement(1835570..1835575) /regulatory_class="ribosome_binding_site" /locus_tag="STM1741" /note="putative RBS for STM1741; RegulonDB:STMS1H001922" gene complement(1835617..1836632) /gene="oppF" /locus_tag="STM1742" /db_xref="GeneID:1253261" CDS complement(1835617..1836621) /gene="oppF" /locus_tag="STM1742" /note="ABC superfamily (atp-binding); oligopeptide transport ATP-binding protein) OPPF. (SW:OPPF_SALTY)" /codon_start=1 /transl_table=11 /product="oligopeptide ABC transporter ATP-binding protein OppF" /protein_id="NP_460701.1" /db_xref="GI:16765086" /db_xref="GeneID:1253261" /translation="MNAVIEQRKVLLEIADLKVHFDIKEGKQWFWQPPKTLKAVDGVT LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGKVAWLGKDLLGMKADEWREVRSD IQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQDVRDRVKAMMLKVGLLPNLINR YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSL IFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMSAVPIPDPDLE RNKKIQLLEGELPSPINPPSGCVFRTRCPIAGPECAQTRPVLEGSFRHAVSCLKVDPL " gene complement(1836618..1837638) /gene="oppD" /locus_tag="STM1743" /db_xref="GeneID:1253262" CDS complement(1836618..1837625) /gene="oppD" /locus_tag="STM1743" /note="ABC superfamily (atp-binding); oligopeptide transport ATP-binding protein OPPD. (SW:OPPD_SALTY)" /codon_start=1 /transl_table=11 /product="oligopeptide ABC transporter ATP-binding protein OppD" /protein_id="NP_460702.1" /db_xref="GI:16765087" /db_xref="GeneID:1253262" /translation="MSLSETATQAPQPANVLLEVNDLRVTFATPDGDVTAVNDLNFTL RAGETLGIVGESGSGKSQTAFALMGLLATNGRIGGSATFNGREILNLPERELNTLRAE QISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRM KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNT AIIMITHDLGVVAGICDKVLVMYAGRTMEYGKARDVFYQPVHPYSIGLLNAVPRLDSE GAEMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICNNAPPLEAFSPGRLRACFKPVEEL L" regulatory complement(1836627..1836632) /regulatory_class="ribosome_binding_site" /gene="oppF" /locus_tag="STM1742" /note="putative RBS for oppF; RegulonDB:STMS1H001923" regulatory complement(1837633..1837638) /regulatory_class="ribosome_binding_site" /gene="oppD" /locus_tag="STM1743" /note="putative RBS for oppD; RegulonDB:STMS1H001924" gene complement(1837637..1838557) /gene="oppC" /locus_tag="STM1744" /db_xref="GeneID:1253263" CDS complement(1837637..1838545) /gene="oppC" /locus_tag="STM1744" /note="ABC superfamily (membrane); oligopeptide transport system permease protein OPPC. (SW:OPPC_SALTY)" /codon_start=1 /transl_table=11 /product="peptide ABC transporter permease" /protein_id="NP_460703.1" /db_xref="GI:16765088" /db_xref="GeneID:1253263" /translation="MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFMHNRAAVASLI VLFLIALFVTVAPMLSQFTYFDTDWGMMSSAPDMASGHYFGTDSSGRDLLVRVAIGGR ISLMVGIAAALVAVIVGTLYGSLSGYLGGKIDSVMMRLLEILNSFPFMFFVILLVTFF GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTASIVIRHIVPNV LGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPA GFLVVTLFCFNFIGDGLRDALDPKDR" regulatory complement(1838552..1838557) /regulatory_class="ribosome_binding_site" /gene="oppC" /locus_tag="STM1744" /note="putative RBS for oppC; RegulonDB:STMS1H001925" gene complement(1838560..1839492) /gene="oppB" /locus_tag="STM1745" /db_xref="GeneID:1253264" CDS complement(1838560..1839480) /gene="oppB" /locus_tag="STM1745" /note="ABC superfamily (membrane); oligopeptide transport system permease protein OPPB. (SW:OPPB_SALTY)" /codon_start=1 /transl_table=11 /product="oligopeptide transporter permease" /protein_id="NP_460704.1" /db_xref="GI:16765089" /db_xref="GeneID:1253264" /translation="MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERALPPE VLANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFKYKDYTVNDLVAASFPVSAKLGA AAFLLAVIIGVSAGVIAALKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQW LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRR IIFRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVL SLTILVGALTILFNAIVDVLYAVIDPKIRY" regulatory complement(1839487..1839492) /regulatory_class="ribosome_binding_site" /gene="oppB" /locus_tag="STM1745" /note="putative RBS for oppB; RegulonDB:STMS1H001926" gene complement(1839602..1841396) /gene="oppA" /locus_tag="STM1746" /db_xref="GeneID:1253265" CDS complement(1839602..1841350) /gene="oppA" /locus_tag="STM1746" /note="ABC superfamily (periplasm); periplasmic oligopeptide-binding protein precursor. (SW:OPPA_SALTY)" /codon_start=1 /transl_table=11 /product="oligopeptide transport protein with chaperone properties" /protein_id="NP_460705.3" /db_xref="GI:1109557646" /db_xref="GeneID:1253265" /translation="MIAKAVTDLAVHHQCCTGTLTGLNRLVKTSNYNEWSTNTMSNIT KKSLIAAGILTALIAASAATAADVPAGVQLADKQTLVRNNGSEVQSLDPHKIEGVPES NVSRDLFEGLLISDVEGHPSPGVAEKWENKDFKVWTFHLRENAKWSDGTPVTAHDFVY SWQRLADPNTASPYASYLQYGHIANIDDIIAGKKPATDLGVKALDDHTFEVTLSEPVP YFYKLLVHPSVSPVPKSAVEKFGDKWTQPANIVTNGAYKLKNWVVNERIVLERNPQYW DNAKTVINQVTYLPISSEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPNEVRVDPY LCTYYYEINNQKAPFNDVRVRTALKLALDRDIIVNKVKNQGDLPAYSYTPPYTDGAKL VEPEWFKWSQQKRNEEAKKLLAEAGFTADKPLTFDLLYNTSDLHKKLAIAVASIWKKN LGVNVNLENQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSDSSNNTAHYKS PAFDKLIADTLKVADDTQRSELYAKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYTGK DPLDNIYVKNLYIIKH" gene 1841295..1841615 /locus_tag="STM1747" /db_xref="GeneID:1253266" regulatory 1841295..1841300 /regulatory_class="ribosome_binding_site" /locus_tag="STM1747" /note="putative RBS for STM1747; RegulonDB:STMS1H001928" CDS 1841301..1841615 /locus_tag="STM1747" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_448165.1" /db_xref="GI:1109557647" /db_xref="GeneID:1253266" /translation="MQHWWCTARSVTAFAITDFIYSDDSFDRLSSIRYTTYLPTSHVI SDNHLNENTYQQCEIFYKNVWPKSIKCVSEPPIHFTILLTNSLLWKNPCPKKQLNNVK NL" regulatory complement(1841362..1841367) /regulatory_class="ribosome_binding_site" /gene="oppA" /locus_tag="STM1746" /note="putative RBS for oppA; RegulonDB:STMS1H001927" regulatory complement(1841369..1841377) /regulatory_class="minus_10_signal" /gene="oppA" /locus_tag="STM1746" /note="putative -10_signal for oppA; RegulonDB:STMLTH004504" regulatory complement(1841388..1841396) /regulatory_class="minus_35_signal" /gene="oppA" /locus_tag="STM1746" /note="putative -35_signal for oppA; RegulonDB:STMLTH004504" gene complement(1841998..1842657) /gene="ychE" /locus_tag="STM1748" /db_xref="GeneID:1253267" CDS complement(1841998..1842645) /gene="ychE" /locus_tag="STM1748" /note="similar to E. coli putative channel protein (AAC74324.1); Blastp hit to AAC74324.1 (215 aa), 93% identity in aa 1 - 215" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460707.1" /db_xref="GI:16765092" /db_xref="GeneID:1253267" /translation="MIQPLFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTATARN KTNLTANLSVAIILWSSLFLGDGILQLFGISIDSFRIAGGILVVTIAMSMISGKLGED KQNKQEKSETAIRESIGVVPLALPLMAGPGAISSTIVWGTRYHSIAHLLGFSVAIALF ALCCWGVFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN" regulatory complement(1842652..1842657) /regulatory_class="ribosome_binding_site" /gene="ychE" /locus_tag="STM1748" /note="putative RBS for ychE; RegulonDB:STMS1H001929" protein_bind 1842858..1842872 /note="putative binding site for FruR, RegulonDB: STMS1H000185" /bound_moiety="FruR" gene 1843110..1845800 /gene="adhE" /locus_tag="STM1749" /db_xref="GeneID:1253268" regulatory 1843110..1843115 /regulatory_class="ribosome_binding_site" /gene="adhE" /locus_tag="STM1749" /note="putative RBS for adhE; RegulonDB:STMS1H001930" CDS 1843122..1845800 /gene="adhE" /locus_tag="STM1749" /EC_number="1.2.1.10" /EC_number="1.1.1.-" /note="similar to E. coli CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase (AAC74323.1); Blastp hit to AAC74323.1 (891 aa), 97% identity in aa 1 - 891" /codon_start=1 /transl_table=11 /product="bifunctional acetaldehyde-CoA/alcohol dehydrogenase" /protein_id="NP_460708.1" /db_xref="GI:16765093" /db_xref="GeneID:1253268" /translation="MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAAD ARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAE PIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKEATNKAADIVLQAAIAA GAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTP VVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFASHGGYMLQG QELKAVQNVILKNGALNAAIVGQPAYKIAELAGFSVPETTKILIGEVTVVDESEPFAH EKLSPTLAMYRAKDFEEAVEKAEKLVAMGGIGHTSCLYTDQDNQPERVAYFGQMMKTA RILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAEN MLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGV ETEVFFEVEADPTLSVVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHF EELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSGTGSEVTPFAVVTDDATGQKYPLAD YALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLL KENLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLA NALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKL LAWLESIKAELGIPKSIREAGVQEADFLAHVDKLSEDAFDDQCTGANPRYPLISELKQ ILLDTYYGRDFTEGEVAAKKDVVAAPKAEKKAKKSA" gene complement(1845997..1846634) /gene="tdk" /locus_tag="STM1750" /db_xref="GeneID:1253269" CDS complement(1845997..1846614) /gene="tdk" /locus_tag="STM1750" /EC_number="2.7.1.21" /note="similar to E. coli thymidine kinase (AAC74320.1); Blastp hit to AAC74320.1 (205 aa), 92% identity in aa 1 - 204" /codon_start=1 /transl_table=11 /product="thymidine kinase" /protein_id="NP_460709.1" /db_xref="GI:16765094" /db_xref="GeneID:1253269" /translation="MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRF GAGKVSSRIGLSSPAKLFNQNTSLFEEIRAESARQTIHCVLVDESQFLTRQQVYQLSE VVDKLDIPVLCYGLRTDFRGELFVGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQD GRPYNEGEQVVIGGNERYVSVCRKHYKDALEEGSLTAIQERHRHI" regulatory complement(1846629..1846634) /regulatory_class="ribosome_binding_site" /gene="tdk" /locus_tag="STM1750" /note="putative RBS for tdk; RegulonDB:STMS1H001931" gene 1847151..1847690 /gene="hns" /locus_tag="STM1751" /db_xref="GeneID:1253270" regulatory 1847151..1847159 /regulatory_class="minus_35_signal" /gene="hns" /locus_tag="STM1751" /note="putative -35_signal for hns; RegulonDB:STMLTH004505" regulatory 1847175..1847183 /regulatory_class="minus_10_signal" /gene="hns" /locus_tag="STM1751" /note="putative -10_signal for hns; RegulonDB:STMLTH004505" CDS 1847277..1847690 /gene="hns" /locus_tag="STM1751" /note="HU; BH2; H;, NS; pleiotropic regulator; DNA-binding protein H-NS (histone-like protein HLP-II) (protein H1)(protein B1). (SW:HNS_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_460710.1" /db_xref="GI:16765095" /db_xref="GeneID:1253270" /translation="MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEE SAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDE NGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE" gene complement(1847822..1848744) /gene="galU" /locus_tag="STM1752" /db_xref="GeneID:1253271" CDS complement(1847822..1848730) /gene="galU" /locus_tag="STM1752" /EC_number="2.7.7.9" /note="similar to E. coli glucose-1-phosphate uridylyltransferase (AAC74318.1); Blastp hit to AAC74318.1 (302 aa), 97% identity in aa 1 - 302" /codon_start=1 /transl_table=11 /product="UTP--glucose-1-phosphate uridylyltransferase" /protein_id="NP_460711.1" /db_xref="GI:16765096" /db_xref="GeneID:1253271" /translation="MAALNSKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQY VVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLEEVQSICPPHV TIMQVRQGLAKGLGHAVLCAHPVVGNEPVAVILPDVILDEYESDLSQDNLAEMIRRFD ETGNSQIMVEPVEDVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRY VLSADIWALLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAF VEYGIRHNSLGAEFKAWLEEEMGIKK" regulatory complement(1848739..1848744) /regulatory_class="ribosome_binding_site" /gene="galU" /locus_tag="STM1752" /note="putative RBS for galU; RegulonDB:STMS1H001932" gene complement(1848933..1849959) /gene="hnr" /locus_tag="STM1753" /db_xref="GeneID:1253272" CDS complement(1848933..1849946) /gene="hnr" /locus_tag="STM1753" /note="mouse virulence protein; similar to E. coli Hnr protein (AAC74317.1); Blastp hit to AAC74317.1 (337 aa), 90% identity in aa 1 - 337" /codon_start=1 /transl_table=11 /product="two-component system response regulator RssB" /protein_id="NP_460712.1" /db_xref="GI:16765097" /db_xref="GeneID:1253272" /translation="MTQPLVGKQILIVEDEPVFRSLLDSWFSSLGATTALAGDGVDAL ELMGRFTPDLMICDIAMPRMNGLKLVENLRNRGDQTPILVISATENMADIAKALRLGV EDVLLKPVKDLNRLRETVFACLYPNMFNSRVEEEERLFRDWDAMVSNPTAAAQLLQEL QPPVQQVISHCRINYRQLVSADQPGLVLDIAPLSDNELAFYCLDVTRAGDNGVLAALL LRALFNGLLQDQLGQQKHRLPELGALLKQVNHLLRQANLPGQFPLFVGYYHSELKNLI LVSAGLNATLNTGAHQVQISSGVPLGTLGNAYLNQLSQRCDSWQCQIWGAGGRLRLML SAE" regulatory complement(1849954..1849959) /regulatory_class="ribosome_binding_site" /gene="hnr" /locus_tag="STM1753" /note="putative RBS for hnr; RegulonDB:STMS1H001933" gene complement(1850037..1850942) /gene="ychK" /locus_tag="STM1754" /db_xref="GeneID:1253273" CDS complement(1850037..1850942) /gene="ychK" /locus_tag="STM1754" /note="similar to E. coli orf, hypothetical protein (AAC74316.1); Blastp hit to AAC74316.1 (314 aa), 83% identity in aa 14 - 314" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460713.1" /db_xref="GI:16765098" /db_xref="GeneID:1253273" /translation="MRKMKIGLALGSGAARGWSHIGVIKALKQAGIDIDIVAGCSIGS LVGAAYACNKLSALEQWVCSFRYWDVLRLMDVSWGRGGLLRGERVFNHYRDIMPVTDF DHCSRRFGAVATNLSTGRELWFTEGDLHLAVRASCSMPGLMSPVEHNGYWLVDGAVVN PVPVSLTRALGADIVIAVDLQHDAHLMQQDLLSVNVGNINEESDDALPWHKRLKERFS SLTSRRGVSSPGAMEIMTTSIQVLENRLKRNRMAGDPPDILIQPFCPQISTLDFHRAH AAIAAGQLAVEKKMDELIPLVRTDV" gene 1851040..1851511 /gene="ychJ" /locus_tag="STM1755" /db_xref="GeneID:1253274" regulatory 1851040..1851045 /regulatory_class="ribosome_binding_site" /gene="ychJ" /locus_tag="STM1755" /note="putative RBS for ychJ; RegulonDB:STMS1H001934" CDS 1851053..1851511 /gene="ychJ" /locus_tag="STM1755" /note="similar to E. coli orf, hypothetical protein (AAC74315.1); Blastp hit to AAC74315.1 (152 aa), 78% identity in aa 1 - 152" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460714.1" /db_xref="GI:16765099" /db_xref="GeneID:1253274" /translation="MSQPCPCGSADEYSLCCGRIVSGERVAPDPSHLMRSRYCAFVMK DADYLIKSWHPTCNAAAFRDDIIAGFANTRWLGLTIFEHTWSEAENTGYVSFIARFSE QGKNGAIIERSRFIKENGQWYYIDGTRPQLGRNDPCPCGSGKKFKKCCGQ" gene 1851546..1852404 /gene="purU" /locus_tag="STM1756" /db_xref="GeneID:1253275" regulatory 1851546..1851551 /regulatory_class="ribosome_binding_site" /gene="purU" /locus_tag="STM1756" /note="putative RBS for purU; RegulonDB:STMS1H001935" CDS 1851562..1852404 /gene="purU" /locus_tag="STM1756" /EC_number="3.5.1.10" /note="similar to E. coli formyltetrahydrofolate deformylase; for purT-dependent FGAR synthesis (AAC74314.1); Blastp hit to AAC74314.1 (280 aa), 96% identity in aa 1 - 280" /codon_start=1 /transl_table=11 /product="formyltetrahydrofolate deformylase" /protein_id="NP_460715.1" /db_xref="GI:16765100" /db_xref="GeneID:1253275" /translation="MQSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHR TGRFFMRTELEGIFNDSTLLADLDSALPEGSVRELNPAGRRRVVILVTKEAHCLGDLL MKANYGGLDVEIAAVIGNHETLRSLVERFEIPFELVSHEGLTREEHDTKMADAIDAHQ PDYVVLAKYMRVLTPGFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAH YVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYQVLAQRVFVYGNR TIIL" gene 1852564..1852645 /gene="tyrT" /locus_tag="STM1757" /db_xref="GeneID:1253276" tRNA 1852564..1852645 /gene="tyrT" /locus_tag="STM1757" /product="tRNA-Tyr" /db_xref="GeneID:1253276" gene 1852677..1852819 /gene="rtT" /locus_tag="STM1758" /db_xref="GeneID:1253277" ncRNA 1852677..1852819 /ncRNA_class="other" /gene="rtT" /locus_tag="STM1758" /product="regulatory RNA" /db_xref="GeneID:1253277" gene 1852853..1852934 /gene="tyrV" /locus_tag="STM1759" /db_xref="GeneID:1253278" tRNA 1852853..1852934 /gene="tyrV" /locus_tag="STM1759" /product="tRNA-Tyr" /db_xref="GeneID:1253278" gene complement(1853720..1855255) /locus_tag="STM1760" /db_xref="GeneID:1253279" CDS complement(1853720..1855249) /locus_tag="STM1760" /note="similar to E. coli orf, hypothetical protein (AAC73745.1); Blastp hit to AAC73745.1 (327 aa), 31% identity in aa 16 - 305, 33% identity in aa 29 - 273, 32% identity in aa 19 - 307, 33% identity in aa 47 - 320, 30-1073758628dentity in aa 22 - 312, 29% identity in aa 15 - 312, 34-1073758654dentity in aa 12 - 166" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460716.1" /db_xref="GI:16765101" /db_xref="GeneID:1253279" /translation="MRFSSIFKIIILNIFISKMAHAAVCEERYPADSEECQYVQELEQ KAEQGDESAQFSLGSWYAEGRYVKPDYKLAIKWLEKAGKQGSDFSYFILGYHYNYGEN FPLSRQKALEWYRKAAELGDSSTQEILGDAYMYGDGFPQNTQLALEWYRKAASPTNDA GVVRGQGSASSAQFKLGVMYAHGQGVPQDYQQTAILMRKAAENMYYPAQLYLGVAYFY GEGVPQDYRQAVYWLNEGIPGSYTPGHIPLNALYDKAHPADRVHSQTWYRKTAQRVMA KVQYNFGVWYYNGYHLLKDHNLALEWYRRAAAQGLAEAQDAIGVMFMQGEGVSQDYQQ ALAWYRKAARQGLPAAQTHLGIMSAFGRGVAQSDRQAIAWYRKAAKQDFAKAQYQLGV AYSTGRGVPENSRNALKWYLKAAEQGFTPAQSALGEIYAHGRQGVPKDNKQAYIWYYM ASMYTEKSKDDCSALIAERNRLKGTLTPDQLSETYAAFNLIWRKIDQSKEAKKIARKK Y" regulatory complement(1855250..1855255) /regulatory_class="ribosome_binding_site" /locus_tag="STM1760" /note="putative RBS for STM1760; RegulonDB:STMS1H001936" gene complement(1855491..1856184) /gene="narI" /locus_tag="STM1761" /db_xref="GeneID:1253280" CDS complement(1855491..1856168) /gene="narI" /locus_tag="STM1761" /EC_number="1.7.99.4" /note="similar to E. coli nitrate reductase 1, cytochrome b(NR), gamma subunit (AAC74311.1); Blastp hit to AAC74311.1 (225 aa), 92% identity in aa 1 - 225" /codon_start=1 /transl_table=11 /product="respiratory nitrate reductase subunit gamma" /protein_id="NP_460717.1" /db_xref="GI:16765102" /db_xref="GeneID:1253280" /translation="MHFLNMFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLD RKGMNLASNLFHIGILGIFAGHFLGMLTPHWMYEAFLPVDVKQKMAMIAGGACGVLTL VGGILLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLV GWAQSVVTFHGGASAHLDGVAFIFRMHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRKY QIVRARH" gene complement(1856168..1856892) /gene="narJ" /locus_tag="STM1762" /db_xref="GeneID:1253281" CDS complement(1856168..1856878) /gene="narJ" /locus_tag="STM1762" /EC_number="1.7.99.4" /note="chaperone required for molybdenum cofactor assembly in nitrate reductase 1; similar to E. coli nitrate reductase 1, delta subunit, assembly function (AAC74310.1); Blastp hit to AAC74310.1 (236 aa), 88% identity in aa 1 - 236" /codon_start=1 /transl_table=11 /product="nitrate reductase molybdenum cofactor assembly chaperone" /protein_id="NP_460718.1" /db_xref="GI:16765103" /db_xref="GeneID:1253281" /translation="MIELVIVSRLLEYPDAALWQHQQELFDALASSENLDKEDAQTLG VFLRDLTAQDLLDVQAAYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYEQHG LQLDSRELPDHLPLYLEYLAQLPKSEALGGLQDIAPILALLSARLQQRDSRYAVLFDL LLKLANTVIDSDKVAEKIANEARDDTPQALDAVWEEEQVKFFADQGCGESEISAHQRR FAGAVAPQYLNITTGGQH" regulatory complement(1856179..1856184) /regulatory_class="ribosome_binding_site" /gene="narI" /locus_tag="STM1761" /note="putative RBS for narI; RegulonDB:STMS1H001937" gene complement(1856875..1858424) /gene="narH" /locus_tag="STM1763" /db_xref="GeneID:1253282" CDS complement(1856875..1858410) /gene="narH" /locus_tag="STM1763" /EC_number="1.7.99.4" /note="similar to E. coli nitrate reductase 1, beta subunit (AAC74309.1); Blastp hit to AAC74309.1 (512 aa), 92% identity in aa 1 - 511" /codon_start=1 /transl_table=11 /product="nitrate reductase subunit beta" /protein_id="NP_460719.1" /db_xref="GI:16765104" /db_xref="GeneID:1253282" /translation="MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNV ESKPGVGFPNDWENQEKWKGGWIRKINGKLQPRMGNRALLLGKIFANPHLPGIDDYYE PFDYDYQNLHTAPESKHQPIARPRSLITGQRMDKITSGPNWEEILGGEFEKRAKDQNF ENMQKAMYGQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRG WRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDA DAIESAASTENEKDLYQRQLDVFLDPNDPAVIEQALKDGVPQSVIDAAQQSPVYKMAI DWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVDSLRIPVQYLANL LTAGDTQPVLLALKRMLAMRHYKRAETVDGKVDTRALEEVGLSEAQAQEMYRYLAIAN YEDRFVVPSSHRELARDAFPEKSGCGFTFGDGCHGSDTKFNLFNSRRIDAVDVTSKTE PHA" regulatory complement(1856887..1856892) /regulatory_class="ribosome_binding_site" /gene="narJ" /locus_tag="STM1762" /note="putative RBS for narJ; RegulonDB:STMS1H001938" gene complement(1858407..1862248) /gene="narG" /locus_tag="STM1764" /db_xref="GeneID:1253283" CDS complement(1858407..1862150) /gene="narG" /locus_tag="STM1764" /EC_number="1.7.99.4" /note="similar to E. coli nitrate reductase 1, alpha subunit (AAC74308.1); Blastp hit to AAC74308.1 (1247 aa), 95% identity in aa 1 - 1247" /codon_start=1 /transl_table=11 /product="nitrate reductase subunit alpha" /protein_id="NP_460720.1" /db_xref="GI:16765105" /db_xref="GeneID:1253283" /translation="MSKFLDRFRYFKQKGETFADGHGQLLETNRDWEDGYRQRWQHDK IVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDMPNHEPRGCPRGASYSWY LYSANRLKYPLMRKRLMKMWREAKKLHRDPVEAWASIIEDADKAKSFKQARGRGGFVR SSWQEVNELIAASNVYTVKTYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFY DWYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGT KTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPRQYFTDYVRRY TDMPMLVMLEERDGYYAAGRMLRAADLVDSLGQENNPEWKTVAINSNGEMVAPNGSIG FRWGEKGKWNLEQRDGTTGAETELQLSLLGSQDEIADVGFPYFGGEGSEYFNHVALDN VLLHKLPAKRLQLADGSSALVTTVYDLTMANYGLERGLNDENCAASYDDTKAYTPAWA EQITGVPRAQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLVFCG CVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETV TAEELLSPMADKSRYSGHLIDFNVRAERMGWLPSAPQLGTNPLYIAREAEKAGMTPVD YTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEYMLKYLLGTEHGIQ GLDLGKQGGVKPEEVEWRDNGLDGKLDLVVTLDFRLSSTCLYSDIVLPTATWYEKDDM NTSDMHPFIHPLSAAVDPAWESKSDWEIYKGIAKKFSEVCVGHLGKETDVVTLPIQHD SAAELAQPLDVKDWKKGECDLIPGKTAPHIMTVERDYPATYERFTSIGPLMEKIGNGG KGIAWNTQSEMDLLRKLNYTKADGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAW AALSEFTGRDHTHLATNKEEEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNV HELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKAVMGRKSNGNPEKALN FLTPHQKWGIHSTYSDNLLMLTLSRGGPIVWMSETDAKDLGIEDNDWIEVFNSNGALT ARAVVSQRVPAGMTMMYHAQERIVNLPGSEITQQRGGIHNSVTRITPKPTHMIGGYAQ LAYGFNYYGTVGSNRDEFVVVRKMKNINWLDGEGNDQVQESVK" regulatory complement(1858419..1858424) /regulatory_class="ribosome_binding_site" /gene="narH" /locus_tag="STM1763" /note="putative RBS for narH; RegulonDB:STMS1H001939" regulatory complement(1862158..1862163) /regulatory_class="ribosome_binding_site" /gene="narG" /locus_tag="STM1764" /note="putative RBS for narG; RegulonDB:STMS1H001940" regulatory complement(1862221..1862229) /regulatory_class="minus_10_signal" /gene="narG" /locus_tag="STM1764" /note="putative -10_signal for narG; RegulonDB:STMLTH004506" protein_bind complement(1862234..1862256) /note="putative binding site for FNR, RegulonDB: STMS1H000172" /bound_moiety="FNR" regulatory complement(1862240..1862248) /regulatory_class="minus_35_signal" /gene="narG" /locus_tag="STM1764" /note="putative -35_signal for narG; RegulonDB:STMLTH004506" protein_bind complement(1862308..1862322) /note="putative binding site for IHF, RegulonDB: STMS1H000234" /bound_moiety="IHF" protein_bind complement(1862378..1862398) /note="putative binding site for NarL, RegulonDB: STMS1H000320" /bound_moiety="NarL" gene complement(1862538..1864130) /gene="narK" /locus_tag="STM1765" /db_xref="GeneID:1253284" CDS complement(1862538..1863935) /gene="narK" /locus_tag="STM1765" /note="similar to E. coli nitrite extrusion protein (AAC74307.1); Blastp hit to AAC74307.1 (463 aa), 94% identity in aa 1 - 462" /codon_start=1 /transl_table=11 /product="nitrate/nitrite transporter" /protein_id="NP_460721.1" /db_xref="GI:16765106" /db_xref="GeneID:1253284" /translation="MSHLSAPERATGAVITEWRPEDPAFWQQRGHRVASRNLWISVPC LLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPLFGGR RWTAFSTGILIVPCVWLGFAVQDTSTPFSTFIIISLLCGFAGANFASSMANISFFFPK QKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAAFGSHGVEQPDGSQLYLANAAWI WVPFLAIFTLAAWFGMNELATSKASLKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAG FAMLSKTQFPDVQILHYAFFGPFIGALARSAGGAISDRLGGTRVTLINFVLMAIFSGL LFLTLPTGGVGGSFIAFYGVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSE ERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACV VITWAVYGRHSKNKK" regulatory complement(1863939..1863944) /regulatory_class="ribosome_binding_site" /gene="narK" /locus_tag="STM1765" /note="putative RBS for narK; RegulonDB:STMS1H001941" protein_bind complement(1863986..1864010) /gene="narK" /locus_tag="STM1765" /note="putative binding site for FNR, RegulonDB: STMS1H000167" /bound_moiety="FNR" protein_bind complement(1864040..1864060) /gene="narK" /locus_tag="STM1765" /note="putative binding site for NarL, RegulonDB: STMS1H000306" /bound_moiety="NarL" regulatory complement(1864103..1864111) /regulatory_class="minus_10_signal" /gene="narK" /locus_tag="STM1765" /note="putative -10_signal for narK; RegulonDB:STMLTH004507" regulatory complement(1864122..1864130) /regulatory_class="minus_35_signal" /gene="narK" /locus_tag="STM1765" /note="putative -35_signal for narK; RegulonDB:STMLTH004507" protein_bind complement(1864136..1864156) /note="putative binding site for NarL, RegulonDB: STMS1H000315" /bound_moiety="NarL" gene 1864160..1866072 /gene="narX" /locus_tag="STM1766" /db_xref="GeneID:1253285" regulatory 1864160..1864168 /regulatory_class="minus_35_signal" /gene="narX" /locus_tag="STM1766" /note="putative -35_signal for narX; RegulonDB:STMLTH004508" regulatory 1864186..1864194 /regulatory_class="minus_10_signal" /gene="narX" /locus_tag="STM1766" /note="putative -10_signal for narX; RegulonDB:STMLTH004508" protein_bind complement(1864260..1864284) /note="putative binding site for FNR, RegulonDB: STMS1H000171" /bound_moiety="FNR" regulatory 1864268..1864273 /regulatory_class="ribosome_binding_site" /gene="narX" /locus_tag="STM1766" /note="putative RBS for narX; RegulonDB:STMS1H001942" CDS 1864276..1866072 /gene="narX" /locus_tag="STM1766" /EC_number="2.7.3.-" /note="senses nitrate/nitrite; regulates anaerobic respiration and fermentation; similar to E. coli nitrate/nitrate sensor, histidine protein kinase acts on NarL regulator (AAC74306.1); Blastp hit to AAC74306.1 (598 aa), 86% identity in aa 1 - 598" /codon_start=1 /transl_table=11 /product="two-component system sensor histidine kinase NarX" /protein_id="NP_460722.1" /db_xref="GI:16765107" /db_xref="GeneID:1253285" /translation="MFKRCFSPLTLVNQLALIVMLSTAIGVAGMAVSGWLVQGVQGSA HAINKAGSLRMQSYRLLAAVPLDAKDQKLLDEMEQTAFSPELTRAAERDGQQKQLKAL QDYWHNELSPGLQHAQNAHAVAEDVTRFVAGLDRLVTSFDHTTELRIERVVLVHRVMA IFMALLLVFTIIWLRVRLLQPWKQLLSMARAVSQRDFTQRANISGRNEMAALGSALNN MSEELAESYAVLEQRVQEKTAGLEHKNQILSFLWQANRRLHSQAPLCERLSPVLNGLQ NLTQLHDIELRVYDLEDEDNHQEFTCQSDISCDDKGCHLCPRSALPMINGGTTLKWRL TDSHTQYGILLATLPYGRHLSHDQQQLVDTLVEQLTATLALDRHQERQQQLIVMEERA TIARELHDSIAQSLSCMKMQVSCLQMQGDVLPESSRELLSQIRNELNCSWAQLRELLT TFRLQLTEPGLRPALEASCQEFSARFGFTVKLDYQLPPRLVPSHQAIHLLQIAREALS NALKHSHADDVVVTVTQCGKQVKLKVQDNGCGVPENAERSNHYGMIIMRDRAQSLRGD CQVRRRETGGTEVTVTFIPETNFTETQGDTHE" gene 1866052..1866715 /gene="narL" /locus_tag="STM1767" /db_xref="GeneID:1253286" regulatory 1866052..1866057 /regulatory_class="ribosome_binding_site" /gene="narL" /locus_tag="STM1767" /note="putative RBS for narL; RegulonDB:STMS1H001943" CDS 1866065..1866715 /gene="narL" /locus_tag="STM1767" /note="regulates anaerobic respiration and fermentation (LuxR/UhpA family); similar to E. coli pleiotrophic regulation of anaerobic respiration: response regulator for nar, frd, dms and tor genes (AAC74305.1); Blastp hit to AAC74305.1 (216 aa), 96% identity in aa 1 - 216" /codon_start=1 /transl_table=11 /product="two-component system response regulator NarL" /protein_id="NP_460723.1" /db_xref="GI:16765108" /db_xref="GeneID:1253286" /translation="MNNQEPATILLIDDHPMLRTGVKQLVSMAPDISVVGEASNGEQG IDLAESLDPDLILLDLNMPGMNGLETLDKLREKALSGRIVVFSVSNHEEDVVTALKRG ADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATTDRDVTQLTPRE RDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF" gene complement(1866716..1868153) /gene="ychP" /locus_tag="STM1768" /db_xref="GeneID:1253287" CDS complement(1866716..1868140) /gene="ychP" /locus_tag="STM1768" /note="similar to E. coli putative factor (AAC74304.1); Blastp hit to AAC74304.1 (417 aa), 77% identity in aa 1 - 417" /codon_start=1 /transl_table=11 /product="putative invasin" /protein_id="NP_460724.3" /db_xref="GI:1109557648" /db_xref="GeneID:1253287" /translation="MSFLLSFVVEVADTLSRIVFRSFSLSLLLLAASGTIRAQAQDPF TQNRLPDLGMMPESHEGEKHFAEMAKAFGEASMKNNDLDTGEQARQFAFGQVRDVVSE QVNQQLESWLSAWGSASVDINVDNEGHFNGSRGSWFIPLQDKQRYLTWSQLGLTQQTD GLVSNIGVGQRWAQDGWLLGYNTFYDNLLDENLQRAGFGAEAWGEYLRLSANYYQPFA DWQTHTATLEQRMARGYDINAQMRLPFYQHINTSVSLEQYFGDSVDLFDSGTGYHNPV ALKLGLNYTPVPLLTMTAQHKQGESGVSQNNLGLTLNYRFGVPLKKQLAASEVAQSQS LRGSRYDTPQRNSLPTMEYRQRKTLTVFLATPPWDLTPGETVALKLQVRSVHGIRHLS WQGDTQALSLTAGTDTRSTEGWTIIMPAWDHREGAANRWRLSVVVEDEKGQRVSSNEI TLALTEPFITMPDDNPHWQPFQEQ" regulatory complement(1868148..1868153) /regulatory_class="ribosome_binding_site" /gene="ychP" /locus_tag="STM1768" /note="putative RBS for ychP; RegulonDB:STMS1H001944" gene 1868300..1868670 /gene="ychN" /locus_tag="STM1769" /db_xref="GeneID:1253288" regulatory 1868300..1868305 /regulatory_class="ribosome_binding_site" /gene="ychN" /locus_tag="STM1769" /note="putative RBS for ychN; RegulonDB:STMS1H001945" CDS 1868317..1868670 /gene="ychN" /locus_tag="STM1769" /note="involved in intracellular sulfur reduction; similar to E. coli orf, hypothetical protein (AAC74303.1); Blastp hit to AAC74303.1 (117 aa), 92% identity in aa 1 - 117" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460725.1" /db_xref="GI:16765110" /db_xref="GeneID:1253288" /translation="MQNIVIIANGAAYGSESLFNSLRLAIALREQESHLDLRLFLMSD AVTAGLRGQKPAEGYNIQQMLEILTAQNVPVKLCKTCADGRGITPLPLIDGVEIGTLV ELAQWTLAADKVLTF" gene complement(1868750..1868989) /gene="chaB" /locus_tag="STM1770" /db_xref="GeneID:1253289" CDS complement(1868750..1868980) /gene="chaB" /locus_tag="STM1770" /note="similar to E. coli cation transport regulator (AAC74301.1); Blastp hit to AAC74301.1 (76 aa), 84% identity in aa 1 - 75" /codon_start=1 /transl_table=11 /product="cation transport regulator" /protein_id="NP_460726.1" /db_xref="GI:16765111" /db_xref="GeneID:1253289" /translation="MPYKAKSDLPDNVRNVLPAHAQDIYKEAFNSAWEQYKDKADRRD DASREETAHKVAWAAVKNDYEKGEDDKWHKKK" regulatory complement(1868984..1868989) /regulatory_class="ribosome_binding_site" /gene="chaB" /locus_tag="STM1770" /note="putative RBS for chaB; RegulonDB:STMS1H001946" gene 1869234..1870347 /gene="chaA" /locus_tag="STM1771" /db_xref="GeneID:1253290" regulatory 1869234..1869239 /regulatory_class="ribosome_binding_site" /gene="chaA" /locus_tag="STM1771" /note="putative RBS for chaA; RegulonDB:STMS1H001947" CDS 1869247..1870347 /gene="chaA" /locus_tag="STM1771" /note="similar to E. coli sodium-calcium/proton antiporter (AAC74300.1); Blastp hit to AAC74300.1 (366 aa), 93% identity in aa 1 - 366" /codon_start=1 /transl_table=11 /product="sodium-potassium/proton antiporter ChaA" /protein_id="NP_460727.1" /db_xref="GI:16765112" /db_xref="GeneID:1253290" /translation="MTHACEAVKTRHKETSLIFPVLALVVLFLWGSSQSLPVVIGINI LALIGILSSAFSVVRHADVLAHRLGEPYGSLILSLSVVILEVSLISALMATGDAAPTL MRDTLYSIIMIVTGGLVGFSLLLGGRKFATQYMNLFGIKQYLIALFPLAIIVLVFPMA LPQANFSTGQALLVALISAAMYGVFLLIQTKTHQSLFIYEHEDEGDDDNPHHGKPSAH SSGWHTVWLLIHLIAVIAVTKMNASPLEALLTSMNAPVAFTGFLVALLILSPEGLGAL KAVLNNQVQRAMNLFFGSVLATISLTVPVVTLIAWATGNDLVFGLGAPEMVVMVASLV LCHISFSTGRTNVLNGAAHLALFAAYLMTIFA" gene complement(1870401..1871266) /gene="kdsA" /locus_tag="STM1772" /db_xref="GeneID:1253291" CDS complement(1870401..1871255) /gene="kdsA" /locus_tag="STM1772" /EC_number="2.5.1.55" /note="similar to E. coli 2-dehydro-3-deoxyphosphooctulonate aldolase (AAC74299.1); Blastp hit to AAC74299.1 (284 aa), 93% identity in aa 1 - 282" /codon_start=1 /transl_table=11 /product="3-deoxy-8-phosphooctulonate synthase" /protein_id="NP_460728.1" /db_xref="GI:16765113" /db_xref="GeneID:1253291" /translation="MKQKVVNIGDIKVANDLPFVLFGGMNVLESRDLAMRICEHYVTV TQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKIFQELKQTFGVKVITDVHEASQA QPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFHEGGN DKVILCDRGANFGYDNLVVDMLGFSVMKKVSGNSPVIFDVTHALQCRDPFGAASGGRR GQVTELARAGMAVGLAGLFLESHPDPANAKCDGPSALPLAKLEQFLTQIKAIDDLVKS FDELDTEN" regulatory complement(1871261..1871266) /regulatory_class="ribosome_binding_site" /gene="kdsA" /locus_tag="STM1772" /note="putative RBS for kdsA; RegulonDB:STMS1H001948" gene complement(1871293..1872114) /gene="ychA" /locus_tag="STM1773" /db_xref="GeneID:1253292" CDS complement(1871293..1872102) /gene="ychA" /locus_tag="STM1773" /note="similar to E. coli orf, hypothetical protein (AAC74298.1); Blastp hit to AAC74298.1 (269 aa), 85% identity in aa 1 - 269" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460729.1" /db_xref="GI:16765114" /db_xref="GeneID:1253292" /translation="MRSLADFEFNNAPLCDGMILASEMIRLDFPTQFVYDELERLVSL AQEEISQLLSQDEQLEKLLALFYGEWGFTDSRGVYRLSDALWLDKVLKKRQGSAVSLG AILLWIANRLDLPLVPVIFPTQLILRIESLEGEMWLINPFNGETLDEHTLEVWLKGNI SPVAELFNEDLDEADNAEVIRKLLDTLKSSLMEERQMELALRVSEALLQFNPEDPYEI RDRGLIYAQLECEHVALTDLSYFVEQCPEDPISEMIRAQINTIAHKQIVLH" gene complement(1872106..1872562) /gene="sirC" /locus_tag="STM1774" /db_xref="GeneID:1253293" CDS complement(1872106..1872495) /gene="sirC" /locus_tag="STM1774" /note="transcriptional regulator (gi|4887121)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460730.1" /db_xref="GI:16765115" /db_xref="GeneID:1253293" /translation="MTIAMLLTLHLICVALSVSLFVARYWWRYCGHALAAARWTRIVP PVIDTLLLLSGIGLIVKTHILPFTESGSWLTEKLFGVIIYIVLGFIALDYRQARSQQA RFIAFPLALVVLYIIIKLATTKIPLLG" regulatory complement(1872109..1872114) /regulatory_class="ribosome_binding_site" /gene="sirC" /locus_tag="STM1774" /note="putative RBS for ychA; RegulonDB:STMS1H001949" gene complement(1872492..1873333) /gene="hemK" /locus_tag="STM1775" /db_xref="GeneID:1253294" CDS complement(1872492..1873325) /gene="hemK" /locus_tag="STM1775" /note="HEMK protein. (SW:HEMK_SALTY)" /codon_start=1 /transl_table=11 /product="release factor-specific protein-(glutamine-N5) methyltransferase" /protein_id="NP_460731.1" /db_xref="GI:16765116" /db_xref="GeneID:1253294" /translation="MDFQHWLHEAVNQLRDSDSPRRDAEILLEYVTGKGRTYIMAFGE TPLTDVQQQQLADLLQRRKQGEPIAYLTGLREFWSLPLFVSPATLIPRPDTECLVEQA LARLPVKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLAIRN VRILQSCWFSALSGQQFDMIVSNPPYIDAQDPHLSEGDVRFEPRSALVADENGMADLT HIIDNARQMLTPGGFLLLEHGWQQGEAVRAVFRRSGYSDVETCRDYGGNERVTCGRFT P" regulatory complement(1872506..1872511) /regulatory_class="ribosome_binding_site" /gene="sirC" /locus_tag="STM1774" /note="putative RBS for sirC; RegulonDB:STMS1H001950" regulatory complement(1872538..1872546) /regulatory_class="minus_10_signal" /gene="sirC" /locus_tag="STM1774" /note="putative -10_signal for sirC; RegulonDB:STMLTH004509" regulatory complement(1872554..1872562) /regulatory_class="minus_35_signal" /gene="sirC" /locus_tag="STM1774" /note="putative -35_signal for sirC; RegulonDB:STMLTH004509" gene complement(1873325..1874425) /gene="prfA" /locus_tag="STM1776" /db_xref="GeneID:1253295" CDS complement(1873325..1874407) /gene="prfA" /locus_tag="STM1776" /note="peptide chain release factor 1 (RF-1). (SW:RF1_SALTY)" /codon_start=1 /transl_table=11 /product="peptide chain release factor 1" /protein_id="NP_460732.1" /db_xref="GI:16765117" /db_xref="GeneID:1253295" /translation="MKPSIVAKLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQ LSDVSRCFTDWQQVQDDIETAQMMLDDPEMREMAQEELREAKEKSEQLEQQLQVLLLP KDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSMSEGEHGGYK EIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAELPDIN PADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGA RIHAAETAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDETME GKLDMLIEPIVQEHQADLLAALSEQE" regulatory complement(1873328..1873333) /regulatory_class="ribosome_binding_site" /gene="hemK" /locus_tag="STM1775" /note="putative RBS for hemK; RegulonDB:STMS1H001951" regulatory complement(1874420..1874425) /regulatory_class="ribosome_binding_site" /gene="prfA" /locus_tag="STM1776" /note="putative RBS for prfA; RegulonDB:STMS1H001952" gene complement(1874448..1875724) /gene="hemA" /locus_tag="STM1777" /db_xref="GeneID:1253296" CDS complement(1874448..1875704) /gene="hemA" /locus_tag="STM1777" /EC_number="1.-.-.-" /note="glutamyl-tRNA reductase. (SW:HEM1_SALTY)" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA reductase" /protein_id="NP_460733.1" /db_xref="GI:16765118" /db_xref="GeneID:1253296" /translation="MTLLALGINHKTAPVSLRERVTFSPDTLDQALDSLLAQPMVQGG VVLSTCNRTELYLSVEEQDNLQEALIRWLCDYHNLNEDDLRNSLYWHQDNDAVSHLMR VASGLDSLVLGEPQILGQVKKAFADSQKGHLNASALERMFQKSFSVAKRVRTETDIGA SAVSVAFAACTLARQIFESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRER AQALADEVGAEVISLSDIDARLQDADIIISSTASPLPIIGKGMVERALKSRRNQPMLL VDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRQAAAVEAETIVEQEASEFMA WLRAQGASETIREYRSQSEQIRDELTTKALSALQQGGDAQAILQDLAWKLTNRLIHAP TKSLQQAARDGDDERLNILRDSLGLE" regulatory complement(1875719..1875724) /regulatory_class="ribosome_binding_site" /gene="hemA" /locus_tag="STM1777" /note="putative RBS for hemA; RegulonDB:STMS1H001953" gene 1876001..1876641 /gene="lolB" /locus_tag="STM1778" /db_xref="GeneID:1253297" regulatory 1876001..1876006 /regulatory_class="ribosome_binding_site" /gene="lolB" /locus_tag="STM1778" /note="putative RBS for lolB; RegulonDB:STMS1H001954" CDS 1876018..1876641 /gene="lolB" /locus_tag="STM1778" /note="outer-membrane lipoprotein LOLB precursor. (SW:LOLB_SALTY)" /codon_start=1 /transl_table=11 /product="lipoprotein localization factor LolB" /protein_id="NP_460734.1" /db_xref="GI:16765119" /db_xref="GeneID:1253297" /translation="MTLPDFRLIRLLPLASLVLTACTLPGHKGPGKSPDSPQWRQHQQ EVRHLNQYQTRGAFAYISDDQKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGN VQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEV NYRQDGKNWKVVYGGYDSKTQPAMPANMELSDGSQRIKLKMDNWIVK" gene 1876626..1877489 /gene="ipk" /locus_tag="STM1779" /db_xref="GeneID:1253298" regulatory 1876626..1876631 /regulatory_class="ribosome_binding_site" /gene="lolB" /locus_tag="STM1778" /note="putative RBS for ipk; RegulonDB:STMS1H001955" CDS 1876638..1877489 /gene="ipk" /locus_tag="STM1779" /EC_number="2.7.-.-" /note="4-diphosphocytidyl-2-C-methyl-D-erythritol kinase. (SW:ISPE_SALTY)" /codon_start=1 /transl_table=11 /product="4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase" /protein_id="NP_460735.1" /db_xref="GI:16765120" /db_xref="GeneID:1253298" /translation="MMTHWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTLHIE PRHDGEIHLLTPVNGVENEDNLIVRAARLLMKVASESGRLPAGSGADISIEKRLPMGG GLGGGSSNAATVLVALNHLWQCGLSIDELATLGLTLGADVPVFVRGHAAFAEGVGEIL TPVNPPEKWYLVAHPGVSIPTPVIFKDPQLPRNTPKRSIDTLLKCEFSNDCEVIARKR FREVDAALSWLLEYAPSRLTGTGACVFAEFDTESCARQVLEQAPEWLNAFVAKGVNLS PLHRELL" gene 1877687..1878702 /gene="prsA" /locus_tag="STM1780" /db_xref="GeneID:1253299" regulatory 1877687..1877695 /regulatory_class="minus_35_signal" /gene="prsA" /locus_tag="STM1780" /note="putative -35_signal for prsA; RegulonDB:STMLTH004510" regulatory 1877711..1877719 /regulatory_class="minus_10_signal" /gene="prsA" /locus_tag="STM1780" /note="putative -10_signal for prsA; RegulonDB:STMLTH004510" regulatory 1877743..1877748 /regulatory_class="ribosome_binding_site" /gene="prsA" /locus_tag="STM1780" /note="putative RBS for prsA; RegulonDB:STMS1H001956" CDS 1877755..1878702 /gene="prsA" /locus_tag="STM1780" /EC_number="2.7.6.1" /note="ribose-phosphate pyrophosphokinase. (SW:KPRS_SALTY)" /codon_start=1 /transl_table=11 /product="ribose-phosphate pyrophosphokinase" /protein_id="NP_460736.1" /db_xref="GI:16765121" /db_xref="GeneID:1253299" /translation="MPDMKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQI NENVRGGDIFIIQSTCAPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVR SARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQLN LDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVL VDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAANNLRNSVIDEVVVCDTIP LTDEIKALPNVRTLTLSGMLAEAIRRISNEESISAMFEH" gene 1878851..1880512 /gene="ychM" /locus_tag="STM1781" /db_xref="GeneID:1253300" CDS 1878851..1880512 /gene="ychM" /locus_tag="STM1781" /note="similar to E. coli orf, hypothetical protein (AAC74290.1); Blastp hit to AAC74290.1 (550 aa), 93% identity in aa 1 - 550" /codon_start=1 /transl_table=11 /product="putative SulP family transport protein" /protein_id="NP_460737.3" /db_xref="GI:1109557649" /db_xref="GeneID:1253300" /translation="MMPFRALIDACWKEKYTASRFTRDVIAGITVGIIAIPLAMALAI GSGVAPQYGLYTSAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGLAGLLVATL MSGFFLILFGLARLGRLIEYIPVSVTLGFTSGIGITIGTMQIKDFLGLQMAHVPEHYL QKVGALFMALPTVNIGDAAIGVVTLGTLIFWPRLGIRLPGHLPALLAGCAVMGIVNLL GGNVATIGSQFHYVLADGTQGNGIPQLLPQLMLPWSLPGSDFTLSWDSLRALLPAAFS MAMLGAIESLLCAVVLDGMTGTKHKANSELIGQGLGNMVAPFFGGITATAAIARSAAN VRAGATSPISAVIHAILVILALLVLAPLLSWLPLSAMAALLLMVAWNMSEAHKVVDLL RHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIARMTRLAPVNVDVPDD VLVLRVIGPLFFAAAEGLFTDLESRIKGKRIVVLKWDAVPVLDAGGLDAFQRFVKRLP EGCELRISNLEFQPLRTMARAGIKPIPGRLTFFPNRTEALADLLS" gene complement(1880557..1880845) /gene="ychH" /locus_tag="STM1782" /db_xref="GeneID:1253301" CDS complement(1880557..1880835) /gene="ychH" /locus_tag="STM1782" /note="similar to E. coli orf, hypothetical protein (AAC74289.1); Blastp hit to AAC74289.1 (92 aa), 91% identity in aa 1 - 92" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460738.1" /db_xref="GI:16765123" /db_xref="GeneID:1253301" /translation="MKRKNASLFGNVLMGLGLVVMVVGVGYSILNQLPQFNLPQFFAH GAILSIFVGAVLWLAGARVGGHEQVSDKYWWVRHYDKRCRRNDNRRHS" regulatory complement(1880840..1880845) /regulatory_class="ribosome_binding_site" /gene="ychH" /locus_tag="STM1782" /note="putative RBS for ychH; RegulonDB:STMS1H001957" gene 1881087..1881695 /gene="pth" /locus_tag="STM1783" /db_xref="GeneID:1253302" CDS 1881087..1881695 /gene="pth" /locus_tag="STM1783" /EC_number="3.1.1.29" /note="similar to E. coli peptidyl-tRNA hydrolase (AAC74288.1); Blastp hit to AAC74288.1 (194 aa), 91% identity in aa 1 - 194" /codon_start=1 /transl_table=11 /product="peptidyl-tRNA hydrolase" /protein_id="NP_460739.3" /db_xref="GI:1109557650" /db_xref="GeneID:1253302" /translation="MDLLRTKNVAIKLIVGLANPGAEYAATRHNAGAWYVDLLAERLR APLREEPKFFGYTSRITLEGEDVRLLVPTTFMNLSGKAVGAMASFYRIQPDEILVAHD ELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRVGIGHPGDKNKVVGFVLG KPPVSEQKLIDEAIDEAARCTELWFKEGLAKATSRLHTFKAQ" gene 1881797..1882903 /gene="ychF" /locus_tag="STM1784" /db_xref="GeneID:1253303" regulatory 1881797..1881802 /regulatory_class="ribosome_binding_site" /gene="ychF" /locus_tag="STM1784" /note="putative RBS for ychF; RegulonDB:STMS1H001958" CDS 1881812..1882903 /gene="ychF" /locus_tag="STM1784" /note="similar to E. coli putative GTP-binding protein (AAC74287.1); Blastp hit to AAC74287.1 (363 aa), 95% identity in aa 1 - 363" /codon_start=1 /transl_table=11 /product="redox-regulated ATPase YchF" /protein_id="NP_460740.1" /db_xref="GI:16765125" /db_xref="GeneID:1253303" /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVV PMPDPRLDQLAEIVKPQRILPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGH VVRCFENDNIIHVAGKVNPAEDIDVINTELALADLDTCERAIHRVQKKAKGGDKDAKA ELAALEKCLPHLAEAGMLRSLDLTDEDKAAIRYLSFLTLKPTMYIANVNEDGFENNPY LDQVREIAAKEGSVVVPVCAAVEADIAELDDDERDEFMAELGLEEPGLNRVIRAGYRL LNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQTIAFDDFITYKGEQ GAKEAGKMRAEGKDYIVKDGDIMNFLFNV" gene complement(1883062..1884332) /locus_tag="STM1785" /db_xref="GeneID:1253304" CDS complement(1883062..1884327) /locus_tag="STM1785" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460741.1" /db_xref="GI:16765126" /db_xref="GeneID:1253304" /translation="MKNNIRFDLSDYLIHFFRDVNLETGSHIYLPEHCGFNNQHHACF IDAKYLLRLSLRSHKIFSSWSYRNGQRTVYGDSPVVCFTDMPIAAYLETGVRRLERNE KIGLYAIVLPKEQMFNYGARPVIYGLDQHNNARCSQGRNGERILDETALPLIEQYRYV TYVPGKIDWTHEREWRWPYRGDINNFLNHIKEYGIPENIESTPGFDFRSSEISGAGII VPFAEDIPTVAHDILTLIDRGVIGRNTFKFIIAVESLQSWTQLSEPGALLSCINDNTF EFESFFDLSASKVKNYADSINDYVSELYSKKDFLNDSYAMEFGNAWVWIHDNQSQVVR ALLQAGMIKVNKEGRYLLDVNLASVDWPLRRKEAFASHVAGWLKHRFDIEAGRYSVRG KDDYDAIPSYETPLKDQHPFYNHTVNVDW" regulatory complement(1884327..1884332) /regulatory_class="ribosome_binding_site" /locus_tag="STM1785" /note="putative RBS for STM1785; RegulonDB:STMS1H001959" gene 1884759..1885940 /locus_tag="STM1786" /db_xref="GeneID:1253305" regulatory 1884759..1884767 /regulatory_class="minus_35_signal" /locus_tag="STM1786" /note="putative -35_signal for STM1786; RegulonDB:STMLTH004511" regulatory 1884786..1884794 /regulatory_class="minus_10_signal" /locus_tag="STM1786" /note="putative -10_signal for STM1786; RegulonDB:STMLTH004511" regulatory 1884802..1884807 /regulatory_class="ribosome_binding_site" /locus_tag="STM1786" /note="putative RBS for STM1786; RegulonDB:STMS1H001960" CDS 1884822..1885940 /locus_tag="STM1786" /EC_number="1.12.7.2" /note="similar to E. coli hydrogenase-1 small subunit (AAC74057.1); Blastp hit to AAC74057.1 (372 aa), 92% identity in aa 1 - 372" /codon_start=1 /transl_table=11 /product="[Ni/Fe] hydrogenase small subunit" /protein_id="NP_460742.1" /db_xref="GI:16765127" /db_xref="GeneID:1253305" /translation="MNNEETFYQAMRRKGVTRRSFLKFCSLAATSLGLGAGMTPKIAW ALENKPRIPVVWIHGLECTCCTESFIRSSHPLAKDVILSLISLDYDDTLMAAAGAQAE EVFDDITTRYAGKYILAVEGNPPLGEQGMFCISGGRPFIEKLKKAAAGASAIIAWGNC ASWGCVQAARPNPTQATPIDKVITDKPIVKVPGCPPIPDVMSAIITYMVTFDRLPELD RMGRPLMFYGQRIHDKCYRRAHFDAGEFVESWDDDAARKGYCLYKMGCKGPTTYNACS STRWNDGVSFPIQSGHGCLGCSENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGV VAAGVGGHAVASALNQRKRHKQQLAQAEQQPDNEDKQA" gene 1885923..1887730 /locus_tag="STM1787" /db_xref="GeneID:1253306" regulatory 1885923..1885928 /regulatory_class="ribosome_binding_site" /locus_tag="STM1786" /note="putative RBS for STM1787; RegulonDB:STMS1H001961" CDS 1885937..1887730 /locus_tag="STM1787" /EC_number="1.12.7.2" /note="similar to E. coli hydrogenase-1 large subunit (AAC74058.1); Blastp hit to AAC74058.1 (597 aa), 91% identity in aa 1 - 597" /codon_start=1 /transl_table=11 /product="[Ni/Fe] hydrogenase large subunit" /protein_id="NP_460743.1" /db_xref="GI:16765128" /db_xref="GeneID:1253306" /translation="MSNQYQTQGYTVNDAGRRLIVDPITRIEGHMRCEVNIDEQNVIT NAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIQVPDN ANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLNALKADPRATSQLAQSLSAWPMSSP GYFFDVQNRLKKFVDGGQLGIFRNGYWGHPQYKLSPEANLMGFAHYLEALDFQREIVK IHTIFGGKNPHPNWIVGGMPCAINLDQSGAVGAINMERLNLVQSIITRTADFINNVMV PDALAIGQFNKAWSQIGTGLSDKCVLSYGAFPDIANDFSQQSLLMPGGAVINGDFKNV MPVDLADPQQIQEFVDHAWYRYPDDRLGRHPFDGITDPWYNPGDVKGSDTHIQQLNEQ ERYSWIKAPRWRGHAMEVGPLARTLIAYHKGDAATIESVDRMMSALKLPLSGIQSTLG RILCRAHEAQWAVGKLQYFFDRLMTNLKNGDLATANTEKWEPASWPQHCRGIGFTEAP RGALGHWASIRDQKIELYQCVVPTTWNASPRDPKKQIGAYEAALMGTQMAIPDQPLEI LRTLHSFDPCLACSTHVLGDDGSELIAVQVR" gene 1887736..1888480 /locus_tag="STM1788" /db_xref="GeneID:1253307" regulatory 1887736..1887741 /regulatory_class="ribosome_binding_site" /locus_tag="STM1788" /note="putative RBS for STM1788; RegulonDB:STMS1H001962" CDS 1887749..1888480 /locus_tag="STM1788" /note="similar to E. coli probable Ni/Fe-hydrogenase 1 b-type cytochrome subunit (AAC74059.1); Blastp hit to AAC74059.1 (235 aa), 83% identity in aa 6 - 235" /codon_start=1 /transl_table=11 /product="Ni/Fe-hydrogenase b-type cytochrome subunit" /protein_id="NP_460744.1" /db_xref="GI:16765129" /db_xref="GeneID:1253307" /translation="MTGKLSPRVGEARDTAVSHYVFEAPVRLWHWLTVACMLVLMVTG YFIGRPLPSVSGEATYLFYMGYIRLIHFAAAMIFTVLLLGRIYWACVGNRYSRELFIV PVWRRSWWQGAFTVVRWYLFLEKKPGSDIGHNPVAQAAMFGYFLLSVFMILTGFALFG EHSQYAIFAPFRYVVEFFYWTGGNSIDIHSWHRLGMWLIAAFIVGHVYLAIREDIMSD DTVISTMINGYRSHKFPKPHDKEPS" gene 1888466..1889073 /locus_tag="STM1789" /db_xref="GeneID:1253308" regulatory 1888466..1888471 /regulatory_class="ribosome_binding_site" /locus_tag="STM1789" /note="putative RBS for STM1789; RegulonDB:STMS1H001963" CDS 1888477..1889073 /locus_tag="STM1789" /note="similar to E. coli processing of HyaA and HyaB proteins (AAC74060.1); Blastp hit to AAC74060.1 (195 aa), 88% identity in aa 1 - 192" /codon_start=1 /transl_table=11 /product="hydrogenase expression/formation protein" /protein_id="NP_460745.1" /db_xref="GI:16765130" /db_xref="GeneID:1253308" /translation="MNAQRVVVMGLGNLLWADEGFGIRVAERLYARYHWPEEVEIVDG GTQGLNLLGYVEQASHLLLLDAIDYGLAPGSLRTYAGEKIPAYLSAKKMSLHQNSFSE VLALADIRGHLPCHIALVGLQPALLDDYGGSLSEIARSQLPAAEQAALAQLAAWGIVP QANEVARCLNYKCLSMENYEGVRIRQYQTRLEGKRSGE" gene 1889047..1889467 /locus_tag="STM1790" /db_xref="GeneID:1253309" regulatory 1889047..1889052 /regulatory_class="ribosome_binding_site" /locus_tag="STM1790" /note="putative RBS for STM1790; RegulonDB:STMS1H001964" CDS 1889063..1889467 /locus_tag="STM1790" /note="similar to E. coli processing of HyaA and HyaB proteins (AAC74061.1); Blastp hit to AAC74061.1 (132 aa), 72% identity in aa 1 - 125" /codon_start=1 /transl_table=11 /product="hydrogenase-1 operon protein HyaE" /protein_id="NP_460746.1" /db_xref="GI:16765131" /db_xref="GeneID:1253309" /translation="MANDTPFSALWQRLLTRGWQPVEASTVDDWIKRVGDGVILLSSD PRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGK LRGALSGIHPWAELLTLMRSIVDTPAAQETVQ" gene 1889450..1890312 /locus_tag="STM1791" /db_xref="GeneID:1253310" regulatory 1889450..1889455 /regulatory_class="ribosome_binding_site" /locus_tag="STM1790" /note="putative RBS for STM1791; RegulonDB:STMS1H001965" CDS 1889464..1890312 /locus_tag="STM1791" /note="similar to E. coli nickel incorporation into hydrogenase-1 proteins (AAC74062.1); Blastp hit to AAC74062.1 (285 aa), 75% identity in aa 1 - 279" /codon_start=1 /transl_table=11 /product="hydrogenase expression/formation protein" /protein_id="NP_460747.1" /db_xref="GI:16765132" /db_xref="GeneID:1253310" /translation="MSNAFFHLLGPGTQPDDASFSMNPLPLTCQVNGDPSMAALERCA HSPAVMALLTDLRGQLARRIPEVGDVLGWELSPLNADDLSFLNTLLGEGEVSVRIQHP DGSESEIQETIFCGLWRVRHLHNRRLLTDRLEAGSAPLTLWQAATADTLPDDSLLPPP VAGLMNGLPLAHELLAHVRDPALQPHSINLTQLPLSEADRLFLARLCGHGNIQIRISG YGESQINATALRHLWHVRCLDALKGPLLDSYEICPLPELVLAAPEDLADSRQRLDEVC RWLETR" gene 1890376..1891931 /locus_tag="STM1792" /db_xref="GeneID:1253311" regulatory 1890376..1890381 /regulatory_class="ribosome_binding_site" /locus_tag="STM1792" /note="putative RBS for STM1792; RegulonDB:STMS1H001966" CDS 1890387..1891931 /locus_tag="STM1792" /EC_number="1.10.3.-" /note="similar to E. coli probable third cytochrome oxidase, subunit I (AAC74063.1); Blastp hit to AAC74063.1 (514 aa), 88% identity in aa 1 - 514" /codon_start=1 /transl_table=11 /product="cytochrome d terminal oxidase subunit I" /protein_id="NP_460748.1" /db_xref="GI:16765133" /db_xref="GeneID:1253311" /translation="MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAVMETIYVVTG KTVYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWSLYSNYVGDIFGAPLAMEALL AFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNISALWILNANGWMQYPTGAHFN IDTLRMEMSSFSDLVFNPVSQVKFVHTVMSGYVTGAMFIMSISAWYLLRGREREVALR SFAIGSVFGTLAILGTLQLGDSSAYEVAQIQPVKLAAMEGEWQTEPAPAPFHLIAWPQ QEQERNAFAVKIPALLGILATHSLDTPVPGLKNLMDDALPRLKRGREAWLLMKEIAQG NRSPQVLNAFHAVEGDLGYGILLAKYAPDMNHVTPEQYRAAQRGAIPQVAPVFWSFRI MVGCGSLLLVVMLIALIQTLRMRIDQHRWVLRMTLWSLPLPWIAIEAGWFMTEFGRQP WAIQDILPTWYAHSALTPGQLAFSMGLILGLYTLFLIAEVYLMQKYARLGPSAMQHQQ QAQQQG" gene 1891931..1893079 /locus_tag="STM1793" /db_xref="GeneID:1253312" regulatory 1891931..1891936 /regulatory_class="ribosome_binding_site" /locus_tag="STM1793" /note="putative RBS for STM1793; RegulonDB:STMS1H001967" CDS 1891943..1893079 /locus_tag="STM1793" /EC_number="1.10.3.-" /note="similar to E. coli probable third cytochrome oxidase, subunit II (AAC74064.1); Blastp hit to AAC74064.1 (378 aa), 80% identity in aa 1 - 378" /codon_start=1 /transl_table=11 /product="cytochrome d ubiquinol oxidase subunit II" /protein_id="NP_460749.1" /db_xref="GI:16765134" /db_xref="GeneID:1253312" /translation="MLDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARNDD ERRVLINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCALFFRPL AFDYRGKIANARWRALWDTGLVIGSLVPPVVFGIAFGNLFLGVPFAFTPQLHVDYFGT FWQLLSPFALLCGLLSLSLVIMQGGVWLQLKTEGVIRQRALSATRYSALLIVICFLLA GYWLWAGVDGFVLLTQDANGPSNPLLKGVAILPGAWMNHFIRSPLLLIIPLLGMILPI LAFYACLRGQTIRGFLFASLTQACVIFTAGITLFPFVMPSSVSPLSSLTVWDSTSSQM TLEIMLVIVLIFLPIVLLYTLWSYYKMLGRINLGTLRRNDHELY" gene 1893087..1893181 /locus_tag="STM1794" /db_xref="GeneID:1253313" regulatory 1893087..1893092 /regulatory_class="ribosome_binding_site" /locus_tag="STM1794" /note="putative RBS for STM1794; RegulonDB:STMS1H001968" CDS 1893092..1893181 /locus_tag="STM1794" /codon_start=1 /transl_table=11 /product="YbgT family membrane protein" /protein_id="NP_460750.1" /db_xref="GI:16765135" /db_xref="GeneID:1253313" /translation="MWYLLWFVGILLMCSLSTLALVWLESRQQ" gene 1893520..1894850 /locus_tag="STM1795" /db_xref="GeneID:1253314" regulatory 1893520..1893525 /regulatory_class="ribosome_binding_site" /locus_tag="STM1795" /note="putative RBS for STM1795; RegulonDB:STMS1H001969" CDS 1893525..1894850 /locus_tag="STM1795" /EC_number="1.4.1.3" /note="similar to E. coli NADP-specific glutamate dehydrogenase (AAC74831.1); Blastp hit to AAC74831.1 (447 aa), 32% identity in aa 33 - 408" /codon_start=1 /transl_table=11 /product="putative homolog of glutamic dehydrogenase" /protein_id="NP_460751.1" /db_xref="GI:16765136" /db_xref="GeneID:1253314" /translation="MYHGQLKNILLLSLRFIMDKLSYASDSSTSAWNTYLQQIERVAP YLGELSPWVDTLRHPKRALIVDIPVQMDDGTIRHFEGYRVQHNLSRGPGKGGVRYHPD VDLNEVMALSAWMTIKCAALNLPYGGAKGGIRVDPFSLSEGELERLTRRYTSEIGIII GPQKDIPAPDVGTNGKVMAWMMDTYSMNHGTTVTGVVTGKPIHLGGSLGREKATGRGV FVSGLEAARRANIAVEGARVAVQGFGNVGSEAARLFAGAGARVVAIQDHTATLFNATG IDMKALTAWQTEHKQIAGFPGAETIASDAFWRLEMDILIPAALEGQITRQRAEALTCK LVLEGANGPTYPDADDVLASRGILVVPDVVCNAGGVTVSYFEWVQDMASFFWSEEEIN ARMDKIMTDAIVHVWEKAAEKSCSLRTAAYIVACERILLARKDRGIYPG" gene 1894974..1896776 /gene="treA" /locus_tag="STM1796" /db_xref="GeneID:1253315" regulatory 1894974..1894982 /regulatory_class="minus_35_signal" /gene="treA" /locus_tag="STM1796" /note="putative -35_signal for treA; RegulonDB:STMLTH004512" regulatory 1894999..1895007 /regulatory_class="minus_10_signal" /gene="treA" /locus_tag="STM1796" /note="putative -10_signal for treA; RegulonDB:STMLTH004512" regulatory 1895050..1895055 /regulatory_class="ribosome_binding_site" /gene="treA" /locus_tag="STM1796" /note="putative RBS for treA; RegulonDB:STMS1H001970" CDS 1895064..1896776 /gene="treA" /locus_tag="STM1796" /EC_number="3.2.1.28" /note="similar to E. coli trehalase, periplasmic (AAC74281.1); Blastp hit to AAC74281.1 (565 aa), 82% identity in aa 11 - 553" /codon_start=1 /transl_table=11 /product="alpha,alpha-trehalase" /protein_id="NP_460752.1" /db_xref="GI:16765137" /db_xref="GeneID:1253315" /translation="MIPPEIRRSVLLQKAIKLALAGTLLTFASFSATAADPSSDTETP QPPDILLGPLFNDVQNAKLFPDQKTFADAIPNSDPLMILADYRMQRNQSGFDLRHFVD VNFTLPKAGEKYVPPAGQSLREHIDGLWPVLTRSTKNVEKWDSLLPLPESYVVPGGRF REIYYWDSYFTMLGLAESGHWDKVADMVANFGYEIDAWGHIPNGNRTYYLSRSQPPFF AFMVELLAQHEGDDALKEYLPQLQKEYAYWMEGVETLQPGQQNQRVVKLEDGSVLNRY WDDRDTPRPESWVEDIATAKSNPNRPATEIYRDLRSAAASGWDFSSRWMDNPQQLSTI RTTTIAPVDLNALLYQLEKTLARASAAAGDRAKASHYDALANARQKAIEMHLWNNKEG WYADYDLKNNKIRDQLTAAALFPLYVNAAAKDRAAKVAAAAQAHLLQPGGLATTSVKS GQQWDAPNGWAPLQWVAAEGLQNYGQDDVAMEVTWRFLTNVQHTYDREKKLVEKNDVS STGTGGGGGEYPLQDGFGWTNGVTLKMLDLICPQEKPCDSVPSTRPASLSATPTKTPS AATQ" gene complement(1896839..1897112) /gene="ymgE" /locus_tag="STM1797" /db_xref="GeneID:1253316" CDS complement(1896839..1897093) /gene="ymgE" /locus_tag="STM1797" /note="similar to E. coli orf, hypothetical protein (AAC74279.1); Blastp hit to AAC74279.1 (84 aa), 91% identity in aa 1 - 83" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460753.1" /db_xref="GI:16765138" /db_xref="GeneID:1253316" /translation="MGIIAWIVFGLIAGVIAKLLMPGRDGGGFILTCILGIVGAVVGG WLATMFGIGGSISGFNLHSFLVAVVGAIVVLVIFRLLRRG" regulatory complement(1897107..1897112) /regulatory_class="ribosome_binding_site" /gene="ymgE" /locus_tag="STM1797" /note="putative RBS for ymgE; RegulonDB:STMS1H001971" gene 1897247..1897996 /gene="ycgR" /locus_tag="STM1798" /db_xref="GeneID:1253317" regulatory 1897247..1897252 /regulatory_class="ribosome_binding_site" /gene="ycgR" /locus_tag="STM1798" /note="putative RBS for ycgR; RegulonDB:STMS1H001972" CDS 1897262..1897996 /gene="ycgR" /locus_tag="STM1798" /note="similar to E. coli orf, hypothetical protein (AAC74278.1); Blastp hit to AAC74278.1 (244 aa), 72% identity in aa 1 - 244" /codon_start=1 /transl_table=11 /product="flagellar brake protein" /protein_id="NP_460754.1" /db_xref="GI:16765139" /db_xref="GeneID:1253317" /translation="MSGYNEQFLKKNPLAILGVLRDLNKNQVPLRISWAHGQFISKIL AVDPEKLIVDYGSQEYENSAVLRAGQVAIIAETQGAKVEFTLPQLVTGEYQRLPAFIT PLPSSLWFVQRREYFRIGAPLYPPYYGVTTLPDTRTLRFRLFDLSLGGMGALLESAIP DGLIEGARFSQVELNMGQWGIFHVDAQLISISERKVIDGKNETITTPRLSFRFLNVSP AVERELQRIIFSLEREARERANKVRE" gene complement(1898010..1898634) /gene="emtA" /locus_tag="STM1799" /db_xref="GeneID:1253318" CDS complement(1898010..1898621) /gene="emtA" /locus_tag="STM1799" /EC_number="3.2.1.-" /note="similar to E. coli murein transglycosylase E (AAC74277.1); Blastp hit to AAC74277.1 (241 aa), 90% identity in aa 39 - 241" /codon_start=1 /transl_table=11 /product="lytic murein transglycosylase" /protein_id="NP_460755.1" /db_xref="GI:16765140" /db_xref="GeneID:1253318" /translation="MKLRWFAFLVVILAGCSSKQDYRNPPWNAEVPVKRAMQWMPISE KAGAAWGVDPHLITAIIAIESGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWRGEP TTSELKNPERNISMGAAYLSILENGPLAGIKDPQVMQYALVVSYANGAGALLRTFSSD RKKAIEKINDLDADEFFEHVVDNHPAPQAPRYIWKLQQALDAM" regulatory complement(1898629..1898634) /regulatory_class="ribosome_binding_site" /gene="emtA" /locus_tag="STM1799" /note="putative RBS for emtA; RegulonDB:STMS1H001973" gene 1898781..1899706 /gene="ycgQ" /locus_tag="STM1800" /db_xref="GeneID:1253319" regulatory 1898781..1898786 /regulatory_class="ribosome_binding_site" /gene="ycgQ" /locus_tag="STM1800" /note="putative RBS for ycgQ; RegulonDB:STMS1H001974" CDS 1898792..1899706 /gene="ycgQ" /locus_tag="STM1800" /note="homologs of microcin C7; similar to E. coli orf, hypothetical protein (AAC74276.1); Blastp hit to AAC74276.1 (304 aa), 79% identity in aa 1 - 304" /codon_start=1 /transl_table=11 /product="muramoyltetrapeptide carboxypeptidase" /protein_id="NP_460756.1" /db_xref="GI:16765141" /db_xref="GeneID:1253319" /translation="MSLFHLIAPSGYCINQQAALRGVQRLTDAGHQVENDEVIRRRFQ RFAGTDAERLADVNSLASLTSPDTIVMPVRGGYGASRLLDRIDWQALASRQQRDPLLI CGHSDFTAIQAGLLAQANVITFSGPMLAANFGAETLNTFTEQHFWLALRKAQFTVEWQ GDGPQCDAQGTLWGGNLAMLISLIGTPWMPTIDKGILVLEDVNEHPFRVERMLLQLEY AGILNRQSAIVLGSFSGAAPNEYDAGYSLESVYAFLRSRLSVPLITGLDFGHEQRTVT LPIGANAMLKNTRQGTQLTLSGHPTLQL" gene 1899787..1901536 /gene="ycgO" /locus_tag="STM1801" /db_xref="GeneID:1253320" regulatory 1899787..1899792 /regulatory_class="ribosome_binding_site" /gene="ycgO" /locus_tag="STM1801" /note="putative RBS for ycgO; RegulonDB:STMS1H001975" CDS 1899803..1901536 /gene="ycgO" /locus_tag="STM1801" /note="similar to E. coli orf, hypothetical protein (AAC74275.1); Blastp hit to AAC74275.1 (536 aa), 92% identity in aa 1 - 535" /codon_start=1 /transl_table=11 /product="K+/H+ antiporter" /protein_id="NP_460757.1" /db_xref="GI:16765142" /db_xref="GeneID:1253320" /translation="MDAATIISLFILGSILVTSSILLSSFSSRLGIPILVIFLAIGML AGVDGIGGIPFDNYPFAYMVSNLALAIILLDGGMRTQASSFRVALGPALSLATLGVLI TSGLTGMMAAWLFHLDLIEGLLIGAIVGSTDAAAVFSLLGGKGLNERVGSTLEIESGS NDPMAVFLTITLIEMIQKHETGLDWMFAVHIIQQFGLGIVFGLGGGYLLQQMINRISL PSGLYPMLALSGGILIFALTTALEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAW LAQIAMFLVLGLLVTPSDLWPIAVPALILSIWMIFFARPLSVFTGLLPFRGFNLRERI FISWVGLRGAVPIILAVFPMMAGLENARLFFNVAFFVVLVSLLLQGTSLSWAAKRAKV VVPPVGWPVSRVGLDIHPDNPWEQFIYQLSADKWCVGAALRDLHMPNETRIAALFRNN ELFHPTGSTRLQEGDVLCVIGRERDLPALGKLFSQSPPVSLDQRFFGDFILEANAKFA DVALIYGLEEGTEYRDKQQTLGEIIQQLLGAAPVVGDQVEFGGMIWTVAEKEDNVVRK IGVRVAEDEAE" gene complement(1901599..1902680) /gene="dadX" /locus_tag="STM1802" /db_xref="GeneID:1253321" CDS complement(1901599..1902669) /gene="dadX" /locus_tag="STM1802" /EC_number="5.1.1.1" /note="catabolic; alanine racemase, catabolic. (SW:ALR2_SALTY)" /codon_start=1 /transl_table=11 /product="alanine racemase" /protein_id="NP_460758.1" /db_xref="GI:16765143" /db_xref="GeneID:1253321" /translation="MTRPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIE RVWSALGATDGFAMLNLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHS NWQLKALQNARLNAPLDIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHF AQADHPEGIGEAMRRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPS GQWRDIADTGLKPVMTLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGY PRHAPTGTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVAS AAGTLGYELLCAVAPRVPFVTT" regulatory complement(1902675..1902680) /regulatory_class="ribosome_binding_site" /gene="dadX" /locus_tag="STM1802" /note="putative RBS for dadX; RegulonDB:STMS1H001976" gene complement(1902683..1904086) /gene="dadA" /locus_tag="STM1803" /db_xref="GeneID:1253322" CDS complement(1902683..1903981) /gene="dadA" /locus_tag="STM1803" /EC_number="1.4.99.6" /note="similar to E. coli D-amino acid dehydrogenase subunit (AAC74273.1); Blastp hit to AAC74273.1 (432 aa), 90% identity in aa 1 - 432" /codon_start=1 /transl_table=11 /product="D-amino acid dehydrogenase small subunit" /protein_id="NP_460759.1" /db_xref="GI:16765144" /db_xref="GeneID:1253322" /translation="MRVVILGSGVVGVTSAWYLSQAGHDVTVIDRESGPAQETSAANA GQISPGYAAPWAAPGVPLKAIKWMFQRHAPLAVRLDGTPFQLKWMWQMLRNCDTRHYM ENKGRMVRLAEYSRDCLKTLRAATGIEYEGRQGGTLQLFRTAQQYENATRDIAVLEDA GVPYQLLESSRLAEVEPALAEVAHKLTGGLRLPNDETGDCQLFTQRLARMAEQAGVTF RFNTPVEKLLYENDQIYGVKCADEIIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYS LTIPIVEPDGAPVSTILDETYKIAITRFDKRIRVGGMAEIVGFNTDLLQPRRETLEMV VRDLFPRGGHIEQATFWTGLRPMTPDGTPVVGRTRYKNLWLNTGHGTLGWTMACGSGQ LLSDILSGRTPAIPYDDLSVARYRSDFTPTPPQRLHSAHN" regulatory complement(1903987..1903992) /regulatory_class="ribosome_binding_site" /gene="dadA" /locus_tag="STM1803" /note="putative RBS for dadA; RegulonDB:STMS1H001977" regulatory complement(1904059..1904067) /regulatory_class="minus_10_signal" /gene="dadA" /locus_tag="STM1803" /note="putative -10_signal for dadA; RegulonDB:STMLTH004513" protein_bind complement(1904070..1904099) /note="putative binding site for CRP, RegulonDB: STMS1H000060" /bound_moiety="CRP" regulatory complement(1904078..1904086) /regulatory_class="minus_35_signal" /gene="dadA" /locus_tag="STM1803" /note="putative -35_signal for dadA; RegulonDB:STMLTH004513" gene 1904292..1905836 /gene="ycgB" /locus_tag="STM1804" /db_xref="GeneID:1253323" regulatory 1904292..1904297 /regulatory_class="ribosome_binding_site" /gene="ycgB" /locus_tag="STM1804" /note="putative RBS for ycgB; RegulonDB:STMS1H001978" CDS 1904304..1905836 /gene="ycgB" /locus_tag="STM1804" /note="similar to E. coli putative sporulation protein (AAC74272.1); Blastp hit to AAC74272.1 (510 aa), 96% identity in aa 1 - 510" /codon_start=1 /transl_table=11 /product="SpoVR family protein" /protein_id="NP_460760.3" /db_xref="GI:1109557651" /db_xref="GeneID:1253323" /translation="MAMIDSMNKDTTRLSDGPDWTFELLDVYLAEIDRVAKLYQLDTY PHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNP CIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARNYITRC EERYGVDEVEKLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWR TLPKREEEKTVAEARRFPAEPQENLLYFMEKNAPLLEPWQREILRIVRKVSQYFYPQK QTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINP YALGFAMFQDIKRICQSPTDEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPK VMRDFRFFTVLDDDRHNYLEISAIHNEEGYREIRSKLSSQYNLSNLEPNIQVWNVDLR GDRSLTLRYIPHNRAPLDKGRKEVLKHVHRLWGFDVMLEQQNEDGSVELLERCPPRMN ML" gene complement(1905883..1906616) /gene="fadR" /locus_tag="STM1805" /db_xref="GeneID:1253324" CDS complement(1905883..1906602) /gene="fadR" /locus_tag="STM1805" /note="GntR family; similar to E. coli negative regulator for fad regulon, and positive activator of fabA (AAC74271.1); Blastp hit to AAC74271.1 (239 aa), 97% identity in aa 1 - 239" /codon_start=1 /transl_table=11 /product="fatty acid metabolism regulator" /protein_id="NP_460761.1" /db_xref="GI:16765146" /db_xref="GeneID:1253324" /translation="MVIKAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVT RTTLREVLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDNLL SVRTNISTIFIRTALRQHPDKAQEVLATAHEVADHADAFADLDYNIFRGLAFASGNPI YGLILNGMKGLYTRIGRHYFANPEARSLALGFYHKLSSLCEQGAHDQVYETVRRYGHD SGEIWHRMQKNLPGDLAIQGR" regulatory complement(1906611..1906616) /regulatory_class="ribosome_binding_site" /gene="fadR" /locus_tag="STM1805" /note="putative RBS for fadR; RegulonDB:STMS1H001979" gene 1906809..1908366 /gene="nhaB" /locus_tag="STM1806" /db_xref="GeneID:1253325" regulatory 1906809..1906814 /regulatory_class="ribosome_binding_site" /gene="nhaB" /locus_tag="STM1806" /note="putative RBS for nhaB; RegulonDB:STMS1H001980" CDS 1906822..1908366 /gene="nhaB" /locus_tag="STM1806" /note="Na+/H+ antiporter; regulator of intracellular pH; similar to E. coli Na+/H+ antiporter, pH independent (AAC74270.1); Blastp hit to AAC74270.1 (513 aa), 92% identity in aa 1 - 513" /codon_start=1 /transl_table=11 /product="Na+/H+ antiporter NhaB" /protein_id="NP_460762.1" /db_xref="GI:16765147" /db_xref="GeneID:1253325" /translation="MEISWGRAMWRNFLGQSPDWYKLALLVFLIVNPFIFLANPFIAG WLLVAEFIFTLAMALKCYPLLPGGLLAIEAVIIGMTSAAHVREEVAANLEVLLLLMFM VAGIYFMKQLLLFIFTRLLLSIRSKMVLSLAFCVAAAFLSAFLDALTVVAVVISVAVG FYGIYHRVASSRGEENDMLDDSHIDPHYKTVLEQFRGFLRSLMMHAGVGTALGGVMTM VGEPQNLIIAKAAGWHFGDFFLRMSPVTVPVLVCGLLTCMLVEKMRWFGYGETLPEKV RDVLQQFDDQSRKKRTRQDKIKLIVQAIIGVWLVTALALHLAEVGLIGLSVIILATAL TGVTDEHAIGKAFTESLPFTALLTVFFSIVAVIIDQHLFAPIIQFVLQASEHAQLTLF YLFNGLLSSISDNVFVGTIYINEAKAAMENGAISLKQFELLAVAINTGTNLPSVATPN GQAAFLFLLTSALAPLIRLSYGRMVWMALPYTIVLTLIGLLCVEFTLAPATEWMTQAG WLATLS" gene 1908495..1909038 /gene="dsbB" /locus_tag="STM1807" /db_xref="GeneID:1253326" regulatory 1908495..1908500 /regulatory_class="ribosome_binding_site" /gene="dsbB" /locus_tag="STM1807" /note="putative RBS for dsbB; RegulonDB:STMS1H001981" CDS 1908508..1909038 /gene="dsbB" /locus_tag="STM1807" /note="reoxidizes DsbA protein; similar to E. coli reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (AAC74269.1); Blastp hit to AAC74269.1 (176 aa), 85% identity in aa 1 - 176" /codon_start=1 /transl_table=11 /product="disulfide bond formation protein B" /protein_id="NP_460763.1" /db_xref="GI:16765148" /db_xref="GeneID:1253326" /translation="MLRFLNQCSRGRGAWLLMAFTALALEMVALWFQHVMLLKPCVLC IYERCALFGVMGAGLVGAIAPKTPLRYVAMVIWIYSAWRGLQLAYEHTMIQLHPSPFM TCDFMARFPDWLPLGKWLPQVFVASGDCAERQWSFLTLEMPQWLLGIFAAYLVVAIAV VIAQAFKPKKRDLFGR" gene 1909141..1909488 /locus_tag="STM1808" /db_xref="GeneID:1253327" regulatory 1909141..1909146 /regulatory_class="ribosome_binding_site" /locus_tag="STM1808" /note="putative RBS for STM1808; RegulonDB:STMS1H001982" CDS 1909147..1909488 /locus_tag="STM1808" /note="similar to E. coli orf, hypothetical protein (AAC74867.1); Blastp hit to AAC74867.1 (119 aa), 42% identity in aa 2 - 113" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460764.1" /db_xref="GI:16765149" /db_xref="GeneID:1253327" /translation="MSHLRIPANWKVKRSTPFFTKENVPAALLSHHNTAAGVFGQLCV MEGTVTYYGFANETATEPEVKVVINAGQFATSPPQYWHRVELSDDARFNIHFWVEEDH QGEEMYQQKKA" gene complement(1909560..1909746) /locus_tag="STM1809" /db_xref="GeneID:1253328" CDS complement(1909560..1909733) /locus_tag="STM1809" /note="similar to E. coli orf, hypothetical protein (AAC74623.1); Blastp hit to AAC74623.1 (58 aa), 56% identity in aa 2 - 58" /codon_start=1 /transl_table=11 /product="GnsA/GnsB family toxin" /protein_id="NP_460765.1" /db_xref="GI:16765150" /db_xref="GeneID:1253328" /translation="MNSEELTHKAEEEIAALISKKVAELRKKTGQEVSEIEFAPRETM KGLEGYHVKIKLL" regulatory complement(1909741..1909746) /regulatory_class="ribosome_binding_site" /locus_tag="STM1809" /note="putative RBS for STM1809; RegulonDB:STMS1H001983" gene complement(1909925..1910067) /locus_tag="STM1810" /db_xref="GeneID:1253329" CDS complement(1909925..1910062) /locus_tag="STM1810" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460766.1" /db_xref="GI:16765151" /db_xref="GeneID:1253329" /translation="MSERPDLVDPLPEDEPLPGENIPDTPEGDDPLDPDTQNEVEDPR R" regulatory complement(1910062..1910067) /regulatory_class="ribosome_binding_site" /locus_tag="STM1810" /note="putative RBS for STM1810; RegulonDB:STMS1H001984" gene complement(1910414..1910894) /gene="ycgN" /locus_tag="STM1811" /db_xref="GeneID:1253330" CDS complement(1910414..1910875) /gene="ycgN" /locus_tag="STM1811" /note="similar to E. coli orf, hypothetical protein (AAC74265.1); Blastp hit to AAC74265.1 (158 aa), 92% identity in aa 6 - 158" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460767.3" /db_xref="GI:1109557652" /db_xref="GeneID:1253330" /translation="MADTLMSDTPFWQRKTLDEMTDAEWESLCDGCGQCCLHKLMDED TDEIYFTNVACRQLNIKTCQCRHYERRFEFEPDCIKLTRENLPDFEWLPMTCAYRLLA EGKPLPTWHPLLTGSKAAMHGERISVRHIAVKESEVRDWQDHILNKPSWAE" regulatory complement(1910889..1910894) /regulatory_class="ribosome_binding_site" /gene="ycgN" /locus_tag="STM1811" /note="putative RBS for ycgN; RegulonDB:STMS1H001985" gene complement(1910953..1911623) /gene="ycgM" /locus_tag="STM1812" /db_xref="GeneID:1253331" CDS complement(1910953..1911612) /gene="ycgM" /locus_tag="STM1812" /note="similar to E. coli putative isomerase (AAC74264.1); Blastp hit to AAC74264.1 (219 aa), 84% identity in aa 1 - 219" /codon_start=1 /transl_table=11 /product="isomerase/hydrolase" /protein_id="NP_460768.1" /db_xref="GI:16765153" /db_xref="GeneID:1253331" /translation="MYQHRNWQGALLDYPVSKVVCVGSNYANHIKEMGSATPEEPVLF IKPETALCDIRQPLAIPADMGAVHHEVELAVLIGATLRQATEDHVRKAIAGYGVALDL TLRDIQGKMKKAGQPWEKAKGFDNACPISGFIPVAAFCGDPQNTVIGLNVNGEVRQQG STADMIHPIVPLIAYMSRYFTLKAGDVVLTGTPAGVGPLLSGDELDIRFNGETLSTRV L" regulatory complement(1911618..1911623) /regulatory_class="ribosome_binding_site" /gene="ycgM" /locus_tag="STM1812" /note="putative RBS for ycgM; RegulonDB:STMS1H001986" gene complement(1911662..1911994) /gene="ycgL" /locus_tag="STM1813" /db_xref="GeneID:1253332" CDS complement(1911662..1911994) /gene="ycgL" /locus_tag="STM1813" /note="similar to E. coli orf, hypothetical protein (AAC74263.1); Blastp hit to AAC74263.1 (108 aa), 84% identity in aa 6 - 108" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460769.1" /db_xref="GI:16765154" /db_xref="GeneID:1253332" /translation="MRQVTIPLIQSKSMFCVIYRSSKRDQTYLYVEKKDDFSRVPEAL MKGFGQPQLAMMLPLDGRKKLVNAELEKVKQALSEQGYYLQLPPPPEDLLKQHLSSVG QNTSPADR" gene 1912072..1912788 /gene="minC" /locus_tag="STM1814" /db_xref="GeneID:1253333" regulatory 1912072..1912077 /regulatory_class="ribosome_binding_site" /gene="minC" /locus_tag="STM1814" /note="putative RBS for minC; RegulonDB:STMS1H001987" CDS 1912081..1912788 /gene="minC" /locus_tag="STM1814" /note="activated MinC inhibits FtsZ ring formation; similar to E. coli cell division inhibitor, inhibits ftsZ ring formation (AAC74260.1); Blastp hit to AAC74260.1 (231 aa), 84% identity in aa 1 - 231" /codon_start=1 /transl_table=11 /product="septum site-determining protein MinC" /protein_id="NP_460770.1" /db_xref="GI:16765155" /db_xref="GeneID:1253333" /translation="MSNTPIELKGSSFTLSVVHLHEAEPEVIRQALEDKIAQAPAFLK HAPVVINVSGLESPVNWPELHKIVTSTGLRIIGVSGCKDASLKVEIDRMGLPLLTEGK EKAVRPAPVEPATPSEPPQNANPITKTRLIDVPVRSGQRIYAPQCDLIVTSHVSAGAE LIADGNIHVYGMMRGRALAGASGDREAQIFCTHLTAELVSIAGVYWLSDKIPAEFYGK AARLRLADNALTVQPLN" gene 1912801..1913624 /gene="minD" /locus_tag="STM1815" /db_xref="GeneID:1253334" regulatory 1912801..1912806 /regulatory_class="ribosome_binding_site" /gene="minD" /locus_tag="STM1815" /note="putative RBS for minD; RegulonDB:STMS1H001988" CDS 1912812..1913624 /gene="minD" /locus_tag="STM1815" /note="a membrane ATPase, activates MinC, directs division apparatus to middle of cell by oscillating from one half to other; similar to E. coli cell division inhibitor, a membrane ATPase, activates minC (AAC74259.1); Blastp hit to AAC74259.1 (270 aa), 97% identity in aa 1 - 270" /codon_start=1 /transl_table=11 /product="septum site-determining protein MinD" /protein_id="NP_460771.1" /db_xref="GI:16765156" /db_xref="GeneID:1253334" /translation="MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLR NLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLFILPASQTRDKDALTREGV AKVLDSLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGIL ASKSRRAENGEEPIKEHLLLTRYNPGRVNKGDMLSMEDVLEILRIKLVGVIPEDQSVL RASNQGEPVILDATADAGKAYADTVDRLLGEERPFRFIEEEKKGFLKRLFGG" gene 1913617..1913894 /gene="minE" /locus_tag="STM1816" /db_xref="GeneID:1253335" regulatory 1913617..1913622 /regulatory_class="ribosome_binding_site" /gene="minE" /locus_tag="STM1816" /note="putative RBS for minE; RegulonDB:STMS1H001989" CDS 1913628..1913894 /gene="minE" /locus_tag="STM1816" /note="reverses MinC inhibition of FtsZ ring formation; similar to E. coli cell division topological specificity factor, reverses MinC inhibition of ftsZ ring formation (AAC74258.1); Blastp hit to AAC74258.1 (88 aa), 97% identity in aa 1 - 88" /codon_start=1 /transl_table=11 /product="cell division topological specificity factor MinE" /protein_id="NP_460772.1" /db_xref="GI:16765157" /db_xref="GeneID:1253335" /translation="MALLDFFLSRKKSTANIAKERLQIIVAERRRSDAEPHYLPQLRK DILEVICKYVQIDPEMVTVQLEQKDGDISILELNVTLPEAEESK" gene complement(1914016..1915154) /gene="rnd" /locus_tag="STM1817" /db_xref="GeneID:1253336" CDS complement(1914016..1915143) /gene="rnd" /locus_tag="STM1817" /EC_number="3.1.26.3" /note="processes tRNA precursor; similar to E. coli RNase D, processes tRNA precursor (AAC74874.1); Blastp hit to AAC74874.1 (375 aa), 86% identity in aa 1 - 374" /codon_start=1 /transl_table=11 /product="RNase D" /protein_id="NP_460773.1" /db_xref="GI:16765158" /db_xref="GeneID:1253336" /translation="MNYQMIETDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLI QLFDGANVALIDPLGISDWSPLKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLID TQILAAFCGRPLSWGFASMVEEYTGVALDKSESRTDWLARPLSERQCEYAAADVWYLL PIAKKLMIETEAAGWLPAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLACLQ LLADWRLRKARERDMAVNFVVREENLWAVARYMPGSLGELDSLGLSGSEIRFHGKTLI SLVAKAQALPEEALPEPLLNLMDMPGYRKAFKAIKALVAEVSASHHVSGELLASRRQI NQLLNWHWKLKPQNGQPELISGWRAELMEEKLTLLLQEYPL" regulatory complement(1915149..1915154) /regulatory_class="ribosome_binding_site" /gene="rnd" /locus_tag="STM1817" /note="putative RBS for rnd; RegulonDB:STMS1H001990" gene complement(1915216..1916912) /gene="fadD" /locus_tag="STM1818" /db_xref="GeneID:1253337" CDS complement(1915216..1916901) /gene="fadD" /locus_tag="STM1818" /EC_number="6.2.1.3" /note="long-chain-fatty-acid--CoA ligase; similar to E. coli acyl-CoA synthetase, long-chain-fatty-acid--CoA ligase (AAC74875.1); Blastp hit to AAC74875.1 (561 aa), 93% identity in aa 1 - 561" /codon_start=1 /transl_table=11 /product="long-chain-fatty-acid--CoA ligase" /protein_id="NP_460774.1" /db_xref="GI:16765159" /db_xref="GeneID:1253337" /translation="MKKVWLNRYPADVPAEINPDRYQSLVELFEHAATRYADQPAFVN MGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQYPVALFGILRAGMIVV NVNPLYTPRELEHQLNDSGAAAIIIVSNFAHTLEKVVEKTSVQHVILTRMGDQLSTAK GTVVNFVVKYIKRLVPKYHLPDAISFRSALQHGYRMQYVKPEVVAEDLAFLQYTGGTT GVAKGAMLTHRNMLANLEQVKATYGPLLHPGKELVVTALPLYHIFALTMNCLLFIELG GQNLLITNPRDIPGLVKELAKYPFTAMTGVNTLFNALLNNKEFQQLDFSSLHLSAGGG MPVQNVVAERWVKLTGQYLLEGYGLTECAPLVSVNPHDIDYHSGSIGLPVPSTEAKLV DDDDNEVAPGEAGELCVKGPQVMLGYWQRPDATDEIIKDGWLHTGDIAVMDEDGFLRI VDRKKDMILVSGFNVYPNEIEDVVMQHSGVQEVAAVGVPSGSSGEAVKLFVVKKDPAL TDDALITFCRRHLTGYKVPKQVEFREELPKSNVGKILRRELRDEARGKVDNKA" regulatory complement(1916907..1916912) /regulatory_class="ribosome_binding_site" /gene="fadD" /locus_tag="STM1818" /note="putative RBS for fadD; RegulonDB:STMS1H001991" gene complement(1917106..1917700) /gene="slp" /locus_tag="STM1819" /db_xref="GeneID:1253338" CDS complement(1917106..1917687) /gene="slp" /locus_tag="STM1819" /note="similar to E. coli putative outer membrane protein (AAC74876.1); Blastp hit to AAC74876.1 (193 aa), 90% identity in aa 1 - 193" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460775.1" /db_xref="GI:16765160" /db_xref="GeneID:1253338" /translation="MAVQKRLIKGALACAFALMLSGCVTIPDAIKGSSPTPQQDLVRV MNAPQLYIGQEARFGGKVVAVQNQQGKTRLEIATVPLDSGARPVLGEASRGRIFADVN GFLDPVDFRGQLVTVVGPITGTVDGKIGNTPYKFMLMQATGYKRWHLVQQVVMPPQPI DPWFYGGRAWPYGYGGWGWYNPGPAEVQTIVTE" regulatory complement(1917695..1917700) /regulatory_class="ribosome_binding_site" /gene="slp" /locus_tag="STM1819" /note="putative RBS for slp; RegulonDB:STMS1H001992" gene complement(1917759..1918465) /gene="yeaZ" /locus_tag="STM1820" /db_xref="GeneID:1253339" CDS complement(1917759..1918454) /gene="yeaZ" /locus_tag="STM1820" /note="similar to E. coli orf, hypothetical protein (AAC74877.1); Blastp hit to AAC74877.1 (231 aa), 85% identity in aa 1 - 231" /codon_start=1 /transl_table=11 /product="tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB" /protein_id="NP_460776.1" /db_xref="GI:16765161" /db_xref="GeneID:1253339" /translation="MRILAIDTATEACSVALWNNGTINAHFELCPREHTQRILPMVQE ILAASGASLNEIDALAFGRGPGSFTGVRIGIGIAQGLALGANLPMIGVSTLATMAQGA WRKTGATRVLAAIDARMGEVYWAEYQRDAQGVWQGEETEAVLKPERVGERLKQLSGEW ATVGTGWSAWPDLAKECGLTLHDGEVSLPAAEDMLPIASQKLAAGETVAVEHAEPVYL RNEVAWKKLPGKE" regulatory complement(1918460..1918465) /regulatory_class="ribosome_binding_site" /gene="yeaZ" /locus_tag="STM1820" /note="putative RBS for yeaZ; RegulonDB:STMS1H001993" gene complement(1918512..1920433) /gene="yoaA" /locus_tag="STM1821" /db_xref="GeneID:1253340" CDS complement(1918512..1920422) /gene="yoaA" /locus_tag="STM1821" /note="similar to E. coli putative enzyme (AAC74878.1); Blastp hit to AAC74878.1 (636 aa), 95% identity in aa 1 - 635" /codon_start=1 /transl_table=11 /product="ATP-dependent helicase" /protein_id="NP_460777.1" /db_xref="GI:16765162" /db_xref="GeneID:1253340" /translation="MTDDFAADGQLAKAITGFKPREPQRQMAVAVTQAIENAQPLVVE AGTGTGKTYAYLAPALRAGKKVIISTGSKALQDQLYSRDLPTVAKALAFTGKTALLKG RSNYLCLERLEQQALAGGDLPVQTLSDVILLRSWSNQTRDGDISTCVSVAEDSQAWPL VTSTNDNCLGSDCPLYKECFVVKARKKAMDADVVIVNHHLFLADMVVKESGFGELIPQ AEVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLA QSAQDFRLQLGEPGYRGNLRELLADSRIQRAFLLLDDTLELCYDVAKLSLGRSALLDA AFERATLYRSRLKRLKEINQPGYSYWYECTSRHFTLALTPLTVADKFKEVMEQKPGSW IFTSATLSVNDDLHHFTARLGIEQAESMLLPSPFDYTRQALLCVPRNLPQTNQPGAAR QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA RAVRFLAIPSAE" regulatory complement(1920428..1920433) /regulatory_class="ribosome_binding_site" /gene="yoaA" /locus_tag="STM1821" /note="putative RBS for yoaA; RegulonDB:STMS1H001994" gene 1920541..1920897 /gene="yoaB" /locus_tag="STM1822" /db_xref="GeneID:1253341" regulatory 1920541..1920546 /regulatory_class="ribosome_binding_site" /gene="yoaB" /locus_tag="STM1822" /note="putative RBS for yoaB; RegulonDB:STMS1H001995" CDS 1920553..1920897 /gene="yoaB" /locus_tag="STM1822" /note="similar to E. coli orf, hypothetical protein (AAC74879.1); Blastp hit to AAC74879.1 (130 aa), 92% identity in aa 17 - 130" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460778.1" /db_xref="GI:16765163" /db_xref="GeneID:1253341" /translation="MSIVRIDAEDRWSDVVIYNNTLWYTGVPENLDADAFEQTANTLA QIDAVLEKQGSSKSRILDATIFLSDKADFAAMNKAWDAWVVAGHAPVRCTVQAGLMNP KYKVEIKIVAAV" gene complement(1920903..1921094) /gene="yoaH" /locus_tag="STM1823" /db_xref="GeneID:1253342" CDS complement(1920903..1921082) /gene="yoaH" /locus_tag="STM1823" /note="hypothetical protein in fadD-pabB intergenic region. (SW:YOAH_SALTY)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460779.1" /db_xref="GI:16765164" /db_xref="GeneID:1253342" /translation="MFAGLPSLSHEQQQKAVERIQELMSQGMSSGEAIAQVAGELRAN HTGERIVARFEDEDE" regulatory complement(1921089..1921094) /regulatory_class="ribosome_binding_site" /gene="yoaH" /locus_tag="STM1823" /note="putative RBS for yoaH; RegulonDB:STMS1H001996" gene 1921151..1922527 /gene="pabB" /locus_tag="STM1824" /db_xref="GeneID:1253343" regulatory 1921151..1921156 /regulatory_class="ribosome_binding_site" /gene="pabB" /locus_tag="STM1824" /note="putative RBS for pabB; RegulonDB:STMS1H001997" CDS 1921163..1922527 /gene="pabB" /locus_tag="STM1824" /EC_number="4.1.3.-" /note="para-aminobenzoate synthase component I. (SW:PABB_SALTY)" /codon_start=1 /transl_table=11 /product="p-aminobenzoate synthetase, component I" /protein_id="NP_460780.1" /db_xref="GI:16765165" /db_xref="GeneID:1253343" /translation="MMKTLSPTVITLPWRPDAAEHYFAPVNHLPWAMLLHSGDAIHPY NRFDILVADPVTTLTTRAQETTVCTARTTTVTLDDPLHVLQTQLEALPFHPQPDPDLP FQGGALGLFGYDLGRRFEILPDTAARDIALPDMAIGLYDWALIVDHQKQVVSLISYHD ADARYRWLTSQRAPTRTPFRLTSAWQSNMTRCEYGEKFRQVQAWLHSGDCYQVNLSQR FQASYEGDEWQAFERLNRANRAPFSAFLRLHDGAILSLSPERFIQLENGHIQTRPIKG TLPRLNDPQADRQQAQKLANSMKDRAENLMIVDLMRNDIGRVAVPGSVKVPELFVVEP FPAVHHLVSTITARLPDSLHATDLLRAAFPGGSITGAPKVRAMEIIDELEPQRRNAWC GSIGYLSFCGKMDTSITIRTVTATQGQLYCSAGGGIVADSNEEAEYQETFDKVNRILH PLEN" gene 1922516..1923109 /gene="yeaB" /locus_tag="STM1825" /db_xref="GeneID:1253344" regulatory 1922516..1922521 /regulatory_class="ribosome_binding_site" /gene="yeaB" /locus_tag="STM1825" /note="putative RBS for yeaB; RegulonDB:STMS1H001998" CDS 1922531..1923109 /gene="yeaB" /locus_tag="STM1825" /note="hypothetical protein in pabB-sdaA intergenic region. (SW:YEAB_SALTY)" /codon_start=1 /transl_table=11 /product="CoA pyrophosphatase" /protein_id="NP_460781.1" /db_xref="GI:16765166" /db_xref="GeneID:1253344" /translation="MDTSRLTLDHFLSRFQLLRPQMTHETLNQRQAAVLIPVVRRPQP GLLLTQRAIHLRKHAGQVAFPGGAVDSTDASLIAAALREAQEEVAIPPQAVEVIGVLP PVDSVTGFQVTPVVGIIPPNLPWRASEDEVSAVFEMPLAQALQLGRYHPLDVYRRGNS HRVWLSWYEHYFVWGMTANILRELALQIGVKP" gene 1923360..1924737 /gene="sdaA" /locus_tag="STM1826" /db_xref="GeneID:1253345" regulatory 1923360..1923365 /regulatory_class="ribosome_binding_site" /gene="sdaA" /locus_tag="STM1826" /note="putative RBS for sdaA; RegulonDB:STMS1H001999" CDS 1923373..1924737 /gene="sdaA" /locus_tag="STM1826" /EC_number="4.3.1.17" /note="similar to E. coli L-serine deaminase (AAC74884.1); Blastp hit to AAC74884.1 (454 aa), 94% identity in aa 1 - 454" /codon_start=1 /transl_table=11 /product="L-serine ammonia-lyase" /protein_id="NP_460782.1" /db_xref="GI:16765167" /db_xref="GeneID:1253345" /translation="MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDNVTR VAVDVYGSLSLTGKGHHTDIAIIMGLAGNEPATVDIDSIPGFIRDVETRERLLLAQGR HEVDFPKDDGMRFHNGNLPLHENGMQIHAWHDDTVIYSKTYYSIGGGFIVDEEHFGQE ATNEVTVPYPFKSAKEMLEYCNSTGLSLSGMVMQNELALHSKKEIEEYFGHVWQTMQA CIDRGMNTEGVLPGPLRVPRRASALRRMLVSSDKLSSDPMNVIDWVNMFALAVNEENA AGGRVVTAPTNGACGIVPAVLAYYDHFIESVSPDIYTRYFLAAGAIGALYKMNASISG AEVGCQGEVGVACSMAAAGLAELLGASPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPC IERNAIASVKAINAARMAMRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIK VQCD" gene 1924773..1926476 /locus_tag="STM1827" /db_xref="GeneID:1253346" CDS 1924773..1926476 /locus_tag="STM1827" /note="similar to E. coli orf, hypothetical protein (AAC74885.1); Blastp hit to AAC74885.1 (542 aa), 75% identity in aa 5 - 540" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase/phosphodiesterase" /protein_id="NP_460783.3" /db_xref="GI:1109557653" /db_xref="GeneID:1253346" /translation="MGEIFISSSSTPRFPTTLAVSRLAFVANAYWAARMQTAQRIINH YRRNRFIVCTICALVTLILTLSIRFISERNLNHHRTVAFANHAVDALDNVLHPLLVGR NILLPLLELPCATAHLPLRKQAARLQTIRSIGLVKEGILYCSSIFGARNTPIRQLQPD LPAVGDLLLLSTDQSLLKGSPILIQWYPASADGQDGVMEIVNIDLLTTMLLEPQQPQI TSASLTVGKRHLLYGRGVVDTLPELKKDEERYQLSSRHFPFTISVSGPSAGVLAFKHL PTQLPLAVLLSLLIGYIAWLATASRMSFSWEINLALAEREFELFCQPLLNARTQQCTG VEILLRWNNPRQGWISPDVFIPIAEEHNLIAPLTRYVIAETIRQRHYFPINHQFHIGI NVAASHFRHGVLLKDLNQYWFSAEPVQQLVLELTERDALLDVDYRLMRELHRKGVKLA IDDFGTGNSSLSWLEKLRPDILKIDKSFTAAIGTDAVNSTVTDIIIALGQRLNIELVA EGVENQTQAQHLRQHGVQMLQGYLYAKPMPISEFPQWLAGSAPPPARHNGQIMSAMPH L" gene complement(1926498..1928069) /gene="yoaE" /locus_tag="STM1828" /db_xref="GeneID:1253347" CDS complement(1926498..1928057) /gene="yoaE" /locus_tag="STM1828" /note="similar to E. coli putative transport protein (AAC74886.1); Blastp hit to AAC74886.1 (518 aa), 90% identity in aa 1 - 518" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460784.2" /db_xref="GI:1109557654" /db_xref="GeneID:1253347" /translation="MELLMDPSIWVGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRD KARLIGLSLALIMRLALLSIISWLVTLTKPLFTVWDFTFSGRDLIMLLGGIFLLFKAT TELHERLENREHDTGHGKGYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAA VVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAI GFSIVIEVFNQIARRNFIRHQSTLPLRARTADAILRLMGGKRQASTQHETDSPAAISV SEGAFAEEERYMINGVLTLASRSLRGIMTPRGEISWVDANLSVAEIRQQLLSSPHSLF PVCRGELDEIIGIVRAKELLVALEEGADVAAIAASSPAIVVPETLDPINLLGVLRRAR GSFVIVTNEFGVVQGLVTPLDVLEAIAGEFPDADETPEIVADAEGWIVKGGTDLHALQ QALEVDHLVNEEGDIATVAGLVIAANGHIPRVGDVIDVPPLRITIVEANDYRVDLVRI VKEQPAHDEEE" gene complement(1928045..1928380) /locus_tag="STM1829" /db_xref="GeneID:1253348" CDS complement(1928045..1928380) /locus_tag="STM1829" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460785.1" /db_xref="GI:16765170" /db_xref="GeneID:1253348" /translation="MMEIRNFVFDNEKFRSVKYPGYISLQRKVNLCQKPVVSVMFSFR LIRMGYRAAARCMDRHRRHFTLWPFCACQSGISCHSLTLFIALPPASFEMLWAPFSHS LSRSLSWNY" regulatory complement(1928064..1928069) /regulatory_class="ribosome_binding_site" /locus_tag="STM1829" /note="putative RBS for yoaE; RegulonDB:STMS1H002000" protein_bind 1928323..1928351 /note="putative binding site for NagC, RegulonDB: STMS1H000303" /bound_moiety="NagC" protein_bind 1928325..1928345 /note="putative binding site for CRP, RegulonDB: STMS1H000041" /bound_moiety="CRP" gene 1928333..1929498 /gene="manX" /locus_tag="STM1830" /db_xref="GeneID:1253349" regulatory 1928333..1928341 /regulatory_class="minus_35_signal" /gene="manX" /locus_tag="STM1830" /note="putative -35_signal for manX; RegulonDB:STMLTH004514" regulatory 1928357..1928365 /regulatory_class="minus_10_signal" /gene="manX" /locus_tag="STM1830" /note="putative -10_signal for manX; RegulonDB:STMLTH004514" protein_bind 1928369..1928381 /gene="manX" /locus_tag="STM1830" /note="putative binding site for CRP, RegulonDB: STMS1H000037" /bound_moiety="CRP" protein_bind 1928383..1928409 /gene="manX" /locus_tag="STM1830" /note="putative binding site for NagC, RegulonDB: STMS1H000300" /bound_moiety="NagC" protein_bind 1928389..1928417 /gene="manX" /locus_tag="STM1830" /note="putative binding site for Mlc, RegulonDB: STMS1H000290" /bound_moiety="Mlc" regulatory 1928517..1928522 /regulatory_class="ribosome_binding_site" /gene="manX" /locus_tag="STM1830" /note="putative RBS for manX; RegulonDB:STMS1H002001" CDS 1928530..1929498 /gene="manX" /locus_tag="STM1830" /EC_number="2.7.1.191" /note="Sugar Specific PTS family; similar to E. coli PTS enzyme IIAB, mannose-specific (AAC74887.1); Blastp hit to AAC74887.1 (323 aa), 95% identity in aa 1 - 323" /codon_start=1 /transl_table=11 /product="PTS mannose transporter subunit IIAB" /protein_id="NP_460786.1" /db_xref="GI:16765171" /db_xref="GeneID:1253349" /translation="MTIAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAET LIEKYNAQLAKLDTSKGVLFLVDTWGGSPFNAASRIVVDKERYEVIAGVNIPMLVETF MARDDDPSFDELVALAVETGREGVKALKAKPVEKAAPAPVAAAPKAAAPAKPMGPNDY MVIGLARIDDRLIHGQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTAH VVDVAKMIRVYNNPKYAGERVMLLFTNPTDVERIVEGGVKVTSVNIGGMAYRQGKTQV NNAVSVDEKDIEAFKKLNERGIELEVRKVSTDPKLKMMDLIAKVAK" gene 1929538..1930351 /gene="manY" /locus_tag="STM1831" /db_xref="GeneID:1253350" regulatory 1929538..1929543 /regulatory_class="ribosome_binding_site" /gene="manY" /locus_tag="STM1831" /note="putative RBS for manY; RegulonDB:STMS1H002002" CDS 1929551..1930351 /gene="manY" /locus_tag="STM1831" /note="Sugar Specific PTS family; similar to E. coli PTS enzyme IIC, mannose-specific (AAC74888.1); Blastp hit to AAC74888.1 (266 aa), 94% identity in aa 1 - 266" /codon_start=1 /transl_table=11 /product="PTS mannose/fructose/sorbose transporter subunit IIC" /protein_id="NP_460787.1" /db_xref="GI:16765172" /db_xref="GeneID:1253350" /translation="MEITTLQIVLVFIVACIAGMESVLDEFQFHRPLIACTLIGAVLG DMKTGIIIGGTLEMIALGWMNIGAAVAPDAALASIISTVLVIAGHQSIGAGIALAIPL AAAGQVLTIIVRTITVAFQHAADKAAENGNLTALSWLHVSSLFLQAMRIAIPAVIVAI SVGTSEVQGMLNAIPEVVTGGLNIAGGMIVVVGYAMVINMMRAGYLMPFFYLGFVTAA FTNFNLVALGVIGAVMAILYIQLSPKYNRVAGAPAAAAGNNDLDNELD" gene 1930343..1931215 /gene="manZ" /locus_tag="STM1832" /db_xref="GeneID:1253351" regulatory 1930343..1930348 /regulatory_class="ribosome_binding_site" /gene="manY" /locus_tag="STM1831" /note="putative RBS for manZ; RegulonDB:STMS1H002003" CDS 1930355..1931215 /gene="manZ" /locus_tag="STM1832" /note="Sugar Specific PTS family; similar to E. coli PTS enzyme IID, mannose-specific (AAC74889.1); Blastp hit to AAC74889.1 (286 aa), 92% identity in aa 1 - 285" /codon_start=1 /transl_table=11 /product="mannose-specific enzyme IID" /protein_id="NP_460788.1" /db_xref="GI:16765173" /db_xref="GeneID:1253351" /translation="MSEMVDMTKTTTEKKLTPSDIRGVFLRSNLFQGSWNFERMQALG FCFSMVPAIRRLYPENNDARKQAIKRHLEFFNTHPYVAAPVLGVTLAMEEKRANGAEI DDGAINGIKVGLMGPLAGVGDPIFWGTVRPVFAALGAGIAMSGSLLGPLLFFILFNLV RLATRYYGVAYGYRKGVDIVKDMGGGFLQKLTEGASILGLFVMGALVNKWTHVNIPLV VSTITGQDGQTRVTTVQTILDQLMPGLVPLLLTFACMWLLRKKVNPLWIIVGFFVIGI AGYSVGLLGQ" gene 1931262..1931743 /locus_tag="STM1833" /db_xref="GeneID:1253352" regulatory 1931262..1931267 /regulatory_class="ribosome_binding_site" /locus_tag="STM1833" /note="putative RBS for STM1833; RegulonDB:STMS1H002004" CDS 1931273..1931743 /locus_tag="STM1833" /note="similar to E. coli orf, hypothetical protein (AAC74890.1); Blastp hit to AAC74890.1 (152 aa), 88% identity in aa 1 - 152" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460789.1" /db_xref="GI:16765174" /db_xref="GeneID:1253352" /translation="MTITDLVLILFIAALLAYALYDQFIMPRRNGPTLLSIALLRRGR VDSVIFVGLVAILIYNNVTSHGAQMTTWLLSALALMGFYIFWIRTPRIIFKQRGFFFA NVWIEYNRIKEMNLSEDGVLVMQLEQRRLLIRVRNIDDLEKIYKLLIENQYLKI" gene 1932075..1932707 /gene="yebN" /locus_tag="STM1834" /db_xref="GeneID:1253353" regulatory 1932075..1932080 /regulatory_class="ribosome_binding_site" /gene="yebN" /locus_tag="STM1834" /note="putative RBS for yebN; RegulonDB:STMS1H002005" CDS 1932087..1932707 /gene="yebN" /locus_tag="STM1834" /note="similar to E. coli orf, hypothetical protein (AAC74891.1); Blastp hit to AAC74891.1 (206 aa), 90% identity in aa 1 - 206" /codon_start=1 /transl_table=11 /product="putative YebN family transport protein" /protein_id="NP_460790.1" /db_xref="GI:16765175" /db_xref="GeneID:1253353" /translation="MFAGGSDVFNGYPGQDVVMHFTATVLLAFGMSMDAFAASIGKGA TLHKPKFSEALRTGLIFGAVETLTPLIGWGLGILASKFVLEWNHWIAFVLLIFLGGRM IIEGIRGGSDEDETPLRRHSFWLLVTTAIATSLDAMAVGVGLAFLQVNIIATALAIGC ATLIMSTLGMMIGRFIGPMLGKRAEILGGVVLIGIGVQILWTHFHG" gene complement(1932704..1933524) /gene="rrmA" /locus_tag="STM1835" /db_xref="GeneID:1253354" CDS complement(1932704..1933513) /gene="rrmA" /locus_tag="STM1835" /note="similar to E. coli putative enzyme (AAC74892.1); Blastp hit to AAC74892.1 (269 aa), 80% identity in aa 1 - 268" /codon_start=1 /transl_table=11 /product="23S rRNA (guanine(745)-N(1))-methyltransferase" /protein_id="NP_460791.1" /db_xref="GI:16765176" /db_xref="GeneID:1253354" /translation="MSFTCPLCHQPLTQINNSVICPQRHQFDVAKEGYINLLPVQHKR SRDPGDSAEMMQARRAFLDAGHYQPLRDAVINLLRERLDQSATAILDIGCGEGYYTHA FAEALPGVTTFGLDVAKTAIKAAAKRYSQVKFCVASSHRLPFADASMDAVIRIYAPCK AQELARVVKPGGWVVTATPGPHHLMELKGLIYDEVRLHAPYTEQLDGFTLQQSTRLAY HMQLTAEAAVALLQMTPFAWRARPDVWEQLAASAGLSCQTDFNLHLWQRNR" regulatory complement(1933519..1933524) /regulatory_class="ribosome_binding_site" /gene="rrmA" /locus_tag="STM1835" /note="putative RBS for rrmA; RegulonDB:STMS1H002006" gene complement(1933579..1935331) /locus_tag="STM1836" /db_xref="GeneID:1253355" CDS complement(1933579..1935324) /locus_tag="STM1836" /note="similar to E. coli septum formation; penicillin-binding protein 3; peptidoglycan synthetase (AAC73195.1); Blastp hit to AAC73195.1 (588 aa), 63% identity in aa 9 - 581" /codon_start=1 /transl_table=11 /product="peptidoglycan synthase" /protein_id="NP_460792.1" /db_xref="GI:16765177" /db_xref="GeneID:1253355" /translation="MKKKSDGDTRNFTPIRFALLCTAILLSMALLLGRVAWLQIVTPS KLVKQEDMRSLREVTTASPRGMITDREGRPLAVSVPVNAVWADPKTIISKGGVGYNER WQALASALHLSLSTLAERVNSNPAGRFIYLARQVSPQQAEWIDKLNLPGINLREESRR FYPAGHVAANLIGFTNIDGQGIEGIEKSFNAQLTGKPGSRLVRKDKFGHVIENITEVN PVPAHELQLSIDERLQTVTEDALDNAVIWNKAESGAAVLINIPTGEILSMASYPDFNP NNREGAQLDDFRNRAISDTFEPGSTVKPLVIMTALQQGIVQPDSVIDTHPFTLDGHRI RDVGYYPELTLTGILQKSSDTGVSHLSLAMPVQKLMDTYKSFGFGVPTGLGLTGESSG LLPKRRYWSDLDRATFAFGYGLMVTPLQLAHVYATIGSFGIYRPLSITKVDPPVIGTR VMPEELVHEVEHMMESVALPGGGGTKAAVRDYRIAVKTGTAKKIGDDGKYVDKYVAYT AGVAPASNPRFALVVVINNPQNGAYYGGAVSAPVFSQIMGDVLRLENVEPDGMPADSD HLLVMHGSHVAVPGS" regulatory complement(1935326..1935331) /regulatory_class="ribosome_binding_site" /locus_tag="STM1836" /note="putative RBS for STM1836; RegulonDB:STMS1H002007" gene complement(1935544..1935767) /gene="cspC" /locus_tag="STM1837" /db_xref="GeneID:1253356" CDS complement(1935544..1935753) /gene="cspC" /locus_tag="STM1837" /note="multicopy suppresses mukB mutants, putative regulator; cold shock-like protein CSPC. (SW:CSPC_SALTY)" /codon_start=1 /transl_table=11 /product="cold-shock protein" /protein_id="NP_460793.1" /db_xref="GI:16765178" /db_xref="GeneID:1253356" /translation="MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTL AEGQNVEFEIQDGQKGPAAVNVTAI" regulatory complement(1935762..1935767) /regulatory_class="ribosome_binding_site" /gene="cspC" /locus_tag="STM1837" /note="putative RBS for cspC; RegulonDB:STMS1H002008" gene complement(1935766..1935926) /gene="yobF" /locus_tag="STM1838" /db_xref="GeneID:1253357" CDS complement(1935766..1935909) /gene="yobF" /locus_tag="STM1838" /note="similar to E. coli orf, hypothetical protein (AAC74894.1); Blastp hit to AAC74894.1 (47 aa), 93% identity in aa 1 - 47" /codon_start=1 /transl_table=11 /product="DUF2627 domain-containing protein" /protein_id="NP_460794.1" /db_xref="GI:16765179" /db_xref="GeneID:1253357" /translation="MCGIFSKEVLSKHVDVEYRFSAEPYISASSSNVSVLSMLCLRAK KTL" regulatory complement(1935921..1935926) /regulatory_class="ribosome_binding_site" /gene="yobF" /locus_tag="STM1838" /note="putative RBS for yobF; RegulonDB:STMS1H002009" gene complement(1936558..1936856) /locus_tag="STM1839" /db_xref="GeneID:1253358" CDS complement(1936558..1936845) /locus_tag="STM1839" /note="similar to E. coli orf, hypothetical protein (AAC74895.1); Blastp hit to AAC74895.1 (95 aa), 73% identity in aa 1 - 95" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460795.1" /db_xref="GI:16765180" /db_xref="GeneID:1253358" /translation="MNDVLNSGAFSLASLIVSMVVLVVGLALWFFVNRASSRANEQIE LLEALLDQQKRQNALLRRLCEANEPEKEAEPATAASEPKEDEDIIRLVAER" regulatory complement(1936851..1936856) /regulatory_class="ribosome_binding_site" /locus_tag="STM1839" /note="putative RBS for STM1839; RegulonDB:STMS1H002010" gene complement(1936916..1937071) /gene="yobG" /locus_tag="STM1840" /db_xref="GeneID:1253359" CDS complement(1936916..1937059) /gene="yobG" /locus_tag="STM1840" /note="similar to E. coli orf, hypothetical protein (AAC74896.1); Blastp hit to AAC74896.1 (47 aa), 85% identity in aa 1 - 47" /codon_start=1 /transl_table=11 /product="PhoP regulon feedback inhibition protein MgrB" /protein_id="NP_460796.1" /db_xref="GI:16765181" /db_xref="GeneID:1253359" /translation="MKKFRWVVLGIVVVVCLLLWAQVFNIMCDQDVQFFSGICAINKF IPW" regulatory complement(1937066..1937071) /regulatory_class="ribosome_binding_site" /gene="yobG" /locus_tag="STM1840" /note="putative RBS for yobG; RegulonDB:STMS1H002011" gene 1937211..1937456 /locus_tag="STM1841" /db_xref="GeneID:1253360" regulatory 1937211..1937216 /regulatory_class="ribosome_binding_site" /locus_tag="STM1841" /note="putative RBS for STM1841; RegulonDB:STMS1H002012" CDS 1937217..1937456 /locus_tag="STM1841" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460797.1" /db_xref="GI:16765182" /db_xref="GeneID:1253360" /translation="MRLIIRAIVLFALVWIGLLMSGYGILVGSKVNAAGLGLQCHYLT ARGTSTAQYLHTNSGIIGFSDCPIFRKIATVVDNG" gene complement(1937668..1938469) /gene="kdgR" /locus_tag="STM1842" /db_xref="GeneID:1253361" CDS complement(1937668..1938459) /gene="kdgR" /locus_tag="STM1842" /note="similar to E. coli putative regulator (AAC74897.1); Blastp hit to AAC74897.1 (263 aa), 96% identity in aa 1 - 263" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator KdgR" /protein_id="NP_460798.1" /db_xref="GI:16765183" /db_xref="GeneID:1253361" /translation="MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMS KSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMRELSR LTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDRDEV KQILDGVEYKQSTGRTITSTEALLPLLDEVRAQGYGEDNEEQEEGLRCIGVPVFDRFG VVIAGLSISFPTLRFSEERLQEYVAMLHAAARKISEQMGYNDYPF" regulatory complement(1938464..1938469) /regulatory_class="ribosome_binding_site" /gene="kdgR" /locus_tag="STM1842" /note="putative RBS for kdgR; RegulonDB:STMS1H002013" gene 1938635..1940008 /locus_tag="STM1843" /db_xref="GeneID:1253362" CDS 1938635..1940008 /locus_tag="STM1843" /note="similar to E. coli putative transport protein (AAC74898.1); Blastp hit to AAC74898.1 (494 aa), 90% identity in aa 38 - 494" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_460799.1" /db_xref="GI:16765184" /db_xref="GeneID:1253362" /translation="MEKTRADGLPLPQRYGAILTIIIGISMAVLDGAIANVALPTIAT DLHASPASSIWIVNAYQIAIVVSLLSLSFLGDMFGYHRIYKCGLVVFLLSSLFCALSD SLQMLTLARIAQGFGGAALMSVNTALIRLIYPQRHLGRGMGINSFIVAVSSAAGPTIA AAILSISSWKWLFLINVPLGIIALILAIRFLPANIAHDTKPRFDLPSAVMNALTFGLL ITALSGFAQGQSLTLIGAELLVLVVVGFFFVRRQLSLPVPLLPIDLLRIPLFSLSIGT SICSFCAQMLAMVSLPFYLQTVLGRSEVETGLLLTPWPLATMVMAPLAGYLIERLHAG LLGALGMVIMAAGLFALVMLPASPSDLNIIWPMILCGAGFGLFQSPNNHTIITSAPRE RSGGASGMLGTARLLGQSTGAALVALMLNQFGDSGTHLSLLAAAILAILAAVVSGLRI TQPRVQA" gene complement(1940056..1940954) /gene="htpX" /locus_tag="STM1844" /db_xref="GeneID:1253363" CDS complement(1940056..1940937) /gene="htpX" /locus_tag="STM1844" /EC_number="3.4.24.-" /note="integral membrane protein; similar to E. coli heat shock protein, integral membrane protein (AAC74899.1); Blastp hit to AAC74899.1 (293 aa), 96% identity in aa 1 - 293" /codon_start=1 /transl_table=11 /product="zinc metalloprotease HtpX" /protein_id="NP_460800.1" /db_xref="GI:16765185" /db_xref="GeneID:1253363" /translation="MMRIALFLLTNLAVMVVFGLVLSLTGIQSSSVQGLLIMALLFGF GGSFISLLMSKWMALKSVGGEVIEQPRNERERWLMNTVATQARQAGIAMPQVAIYHAP DINAFATGARRDASLVAVSTGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVN TFVIFISRIIAQIAAGFLGGNRDEGEGSNGNPLIYFAVATVLELVFGILASIITMWFS RYREFHADAGSAKLVGREKMIAALQRLKTSYEPQEATSMMAFCINGKSKSLSELFMTH PPLDKRIEALRSGEYLK" regulatory complement(1940949..1940954) /regulatory_class="ribosome_binding_site" /gene="htpX" /locus_tag="STM1844" /note="putative RBS for htpX; RegulonDB:STMS1H002014" gene complement(1941131..1943197) /gene="prc" /locus_tag="STM1845" /db_xref="GeneID:1253364" CDS complement(1941131..1943179) /gene="prc" /locus_tag="STM1845" /EC_number="3.4.21.-" /note="tail-specific protease. (SW:PRC_SALTY)" /codon_start=1 /transl_table=11 /product="C-terminal processing peptidase" /protein_id="NP_460801.1" /db_xref="GI:16765186" /db_xref="GeneID:1253364" /translation="MNTFFRLTALAGLLALAGQSFAVEDITRADQIPVLKEETQHATV SERVTSRFTRSHYRQFDLDEAFSAKIFDRYLNLLDYSHNVLLASDVEQFAKKKTVLGD ELRTGKLDVFYDLYNLAQKRRFERYQYALKVLERPMDFTGNDTFNLDRSKAPWPKDEA ELNALWDGKVKFDELSLKLTGKSDKEIRETLTRRYKFAIRRLAQTNSEDVFSLAMTAF AREIDPHTNYLSPRNTEQFNTEMSLSLEGIGAVLQMDDDYTVINSLVAGGPAAKSKSI SVGDRIVGVGQAGKPMVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIITLT RERIRLEDRAVKMSVKTVGKEKVGVLDIPGFYVGLTDDVKVQLQKLEKQNVNSIVIDL RSNGGGALTEAVSLSGLFIPSGPIVQVRDNNGKVREDSDTDGVVYYKGPLVVLVDRFS ASASEIFAAAMQDYGRALIVGEPTFGKGTVQQYRSLNRIYDQMLRPEWPALGSVQYTI QKFYRVNGGSTQRKGVTPDIIMPTGNEETETGEKFEDNALPWDSIDAAKYVKSDDLAP FGPELLKEHNARIAKDPEFQYIMKDIARFNAMKDKRNIVSLNYAQREKENNEEDALRL ARINDRFKREGKPLLKKLDDLPKDYQEPDPYLDETVKIALDLAHLEKEKPAEQAAANK " regulatory complement(1943192..1943197) /regulatory_class="ribosome_binding_site" /gene="prc" /locus_tag="STM1845" /note="putative RBS for prc; RegulonDB:STMS1H002015" gene complement(1943199..1943896) /gene="proQ" /locus_tag="STM1846" /db_xref="GeneID:1253365" CDS complement(1943199..1943885) /gene="proQ" /locus_tag="STM1846" /note="similar to E. coli orf, hypothetical protein (AAC74901.1); Blastp hit to AAC74901.1 (39 aa), 94% identity in aa 1 - 39" /codon_start=1 /transl_table=11 /product="RNA chaperone ProQ" /protein_id="NP_460802.1" /db_xref="GI:16765187" /db_xref="GeneID:1253365" /translation="MENQPKLNSSKEVIAFLAERFPHCFSAEGEARPLKIGIFQDLVE RVGGEMNLSKTQLRSALRLYTSSWRYLYGVKPGATRVDLDGNPCGELEEQHVEHARKQ LEEAKARVQAQRAEQQAKKREAAAAAGEKEDAPRRERKPRPVARRKEGAERKPRADKP TTKAPRAPREEKHTPVSDISVLTVGQSLKVKAGNNAMDATVLEITKDGVRVQLNSGMS LIVRAEHLVF" regulatory complement(1943891..1943896) /regulatory_class="ribosome_binding_site" /gene="proQ" /locus_tag="STM1846" /note="putative RBS for proQ; RegulonDB:STMS1H002016" gene complement(1943983..1944567) /gene="yebR" /locus_tag="STM1847" /db_xref="GeneID:1253366" CDS complement(1943983..1944567) /gene="yebR" /locus_tag="STM1847" /note="similar to E. coli orf, hypothetical protein (AAC74902.1); Blastp hit to AAC74902.1 (183 aa), 83% identity in aa 11 - 183" /codon_start=1 /transl_table=11 /product="putative GAF domain-containing protein" /protein_id="NP_460803.1" /db_xref="GI:16765188" /db_xref="GeneID:1253366" /translation="MTGIILSKNAFNAYFNSLCLGVRPRSDYIMSKTELYAALNRDFQ SLMAGETSFLATLANTSALLFERLTEVNWAGFYLLEGDTLVLGPFQGRIACVRIPVGR GVCGAAVAQNKVQRIDDVHAFDGHIACDAASNAEIVLPVTVGERIIGVLDIDSTAFGR FTEEDEHGLRTLVAQLETVLATTDYKKFFASVAG" gene 1944601..1945892 /gene="yebS" /locus_tag="STM1848" /db_xref="GeneID:1253367" regulatory 1944601..1944606 /regulatory_class="ribosome_binding_site" /gene="yebS" /locus_tag="STM1848" /note="putative RBS for yebS; RegulonDB:STMS1H002017" CDS 1944609..1945892 /gene="yebS" /locus_tag="STM1848" /note="similar to E. coli orf, hypothetical protein (AAC74903.1); Blastp hit to AAC74903.1 (427 aa), 85% identity in aa 1 - 427" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460804.1" /db_xref="GI:16765189" /db_xref="GeneID:1253367" /translation="MALNTSHVTPTKKLTIRSISEALPRSHYQRCPECDMLFSLPEMS AHQSAYCPRCQAKIRDGRDWSLTRLTAMAVTMLLLMPFAWSEPLLHIYLLGVRIDANV MHGIWQMTQQGDPLTAAMVLFCVVGAPLILVFSIAYLWFGSLLGMNLRPVLLMLEKLK EWVMLDIYLVGIGVASIKVQDYAFLQPGIGLLAFVSLVVLSILTMIHLNVEQLWERFY PQRPAQRADERLRVCLGCHFSGYPDAKGRCPRCHIPLRLRRKQSIQKCWAALLASIVF LLPANLLPISVIYINGGRQEDTILSGIMSLASSNIAVAAVVFIASILVPFTKVIVMFT LLLSIHFKCQQGLRTRILLLRLVTWIGRWSMLDLFVISLTMSLINRDQILAFTMGPAA FYFGAAVILTILAVEWLDSRLLWDAHESGNARFED" gene 1945855..1948494 /locus_tag="STM1849" /db_xref="GeneID:1253368" CDS 1945855..1948494 /locus_tag="STM1849" /note="similar to E. coli orf, hypothetical protein (AAC74904.1); Blastp hit to AAC74904.1 (879 aa), 90% identity in aa 1 - 879" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460805.1" /db_xref="GI:16765190" /db_xref="GeneID:1253368" /translation="MHMSQETPASKTEAQIKTKRRISPFWLLPLIALMIAGWLVWDSY QDRGNSVTIDFMSADGIVPGRTPVRYQGVEVGTVEDVSLSKDLRKIEVRVSIKSDMED ALREETQFWLVTPKASLAGVSGLDALVGGNYIGMMPGKGKPRDHFVALDTQPKYRLSN GDLMIHLHAPDLGSLNSGSLVYFRKIPVGRVYDYSINPNKQGVTIDVLIERRFTDLVK KGSRFWNVSGIDADLSLSGAKVKLESLAALVNGAIAFDSPDNSKPAAQDDTFGLYKDL AHSQRGVIVKLELPSGDGLKAESTPLMYQGLEVGELSKLTLNPGGKVTGEMTVDPSVV PLMRENTRIELRNPKLSLSDANISSLLTGKTFELVPGDGEPRSEFVVVPGEKALLHEA NALTLTLTAPESYGIEPGQPLILHGVKIGQVIERNLSSKGVSFIVAIEPQHRDLVQGD SKFVVNSRVDVKVGLDGVEFLGASASEWIDGGIRILPGTSGKMKSTYPLYANLEKALE NSLSDLPTTTLTLTAETLPDVQAGSVVLYRKFEVGEVITVRPRANTFDIDLHIKPEYR HLLTSNSVFWAEGGAKVQLNGSGLTVQASPLSRALKGAISFDNLSGASASRRKGDKRI LYASETSARAVGGQITLHAFDAGKLAEGMPIRYLGIDIGQIQTLELITARNEVQAKAV LYPEYVQTFARAGTRFSVITPQISAAGVEHLDTILQPYINVEPGRGAARRDFELQEAT ITDSRYLDGLSIVVEAPEAGSLNIGTPVLFRGIEVGTVTGMSLGSLSDRVMITLRISK RYQYLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGIAFATPPGTPLAPKAQA GKHFLLQESEPKEWREWGTALPR" gene 1948558..1950011 /gene="yebU" /locus_tag="STM1850" /db_xref="GeneID:1253369" regulatory 1948558..1948563 /regulatory_class="ribosome_binding_site" /gene="yebU" /locus_tag="STM1850" /note="putative RBS for yebU; RegulonDB:STMS1H002018" CDS 1948572..1950011 /gene="yebU" /locus_tag="STM1850" /note="similar to E. coli putative nucleolar proteins (AAC74905.1); Blastp hit to AAC74905.1 (481 aa), 85% identity in aa 3 - 481" /codon_start=1 /transl_table=11 /product="16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF" /protein_id="NP_460806.1" /db_xref="GI:16765191" /db_xref="GeneID:1253369" /translation="MAQHAVYFPDAFLTQMREAMPSTLSFDEFISACQRPLRRSIRIN TLKISVADFLALIAPYGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEA SSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHA NISRCGIANTALTHFDGRVFGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESN LDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGD LFPDADRALTPEGFLHVFPQIYDCEGFFVARLRKMSSLPAMPAPGYKVGAFPFTPLKG REALHVTQAANAVGLLWDENLHLWQREKEVWLFPAEIESLIGKVRFSRLGIKLAESHN KGYRWQHEATIALACPTHAHAFELSVQEAEEWYRGRDIYPQTPPAADDVLVTFQHQPL GLAKRIGARIKNSYPRELVRDGKLFTGNS" gene 1950114..1950365 /locus_tag="STM1851" /db_xref="GeneID:1253370" regulatory 1950114..1950119 /regulatory_class="ribosome_binding_site" /locus_tag="STM1851" /note="putative RBS for STM1851; RegulonDB:STMS1H002019" CDS 1950126..1950365 /locus_tag="STM1851" /note="similar to E. coli orf, hypothetical protein (AAC74906.1); Blastp hit to AAC74906.1 (83 aa), 88% identity in aa 6 - 83" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460807.1" /db_xref="GI:16765192" /db_xref="GeneID:1253370" /translation="MMKTSVRIGAFEIDDAELHGESPGERTLTIPCKSDPDLCMQLDA WDAETSVPAILNGEHSVLFRTHYDPKSDAWVMRLA" gene 1950467..1950667 /gene="yebW" /locus_tag="STM1852" /db_xref="GeneID:1253371" regulatory 1950467..1950472 /regulatory_class="ribosome_binding_site" /gene="yebW" /locus_tag="STM1852" /note="putative RBS for yebW; RegulonDB:STMS1H002020" CDS 1950476..1950667 /gene="yebW" /locus_tag="STM1852" /note="similar to E. coli orf, hypothetical protein (AAC74907.1); Blastp hit to AAC74907.1 (91 aa), 87% identity in aa 29 - 91" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460808.1" /db_xref="GI:16765193" /db_xref="GeneID:1253371" /translation="MFALVLFVCYLDGGCEDIVVDIYDTEQHCLYSMDDQRIRHGGCF PVEDFIDGFWRPAQQYSDF" gene complement(1950686..1951346) /gene="prpA" /locus_tag="STM1853" /db_xref="GeneID:1253372" CDS complement(1950686..1951336) /gene="prpA" /locus_tag="STM1853" /EC_number="3.1.3.16" /note="similar to E. coli protein phosphatase 1 modulates phosphoproteins, signals protein misfolding (AAC74908.1); Blastp hit to AAC74908.1 (219 aa), 63% identity in aa 2 - 219" /codon_start=1 /transl_table=11 /product="serine/threonine-protein phosphatase" /protein_id="NP_460809.1" /db_xref="GI:16765194" /db_xref="GeneID:1253372" /translation="MMRPEEIYQRIEAKNWRHVWVVGDIHGCFSMLMKRLRECRFDPQ QDLLVSVGDLIDRGPDSLGCLALLRESWMTAVRGNHEQMALDARASSQSTLWLMNGGD WFTRLTAEHAAQAEALFILCQRLPWILEVRCRHSTHVIAHADYPASTYQWQKKVDLHQ VLWSRERLINKRGGISGADHFWFGHTPLRRRMDFANVHYIDTGAVFGGQLTLARIQ" regulatory complement(1951341..1951346) /regulatory_class="ribosome_binding_site" /gene="prpA" /locus_tag="STM1853" /note="putative RBS for prpA; RegulonDB:STMS1H002021" gene complement(1951560..1951732) /locus_tag="STM1854" /db_xref="GeneID:1253373" CDS complement(1951560..1951724) /locus_tag="STM1854" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460810.1" /db_xref="GI:16765195" /db_xref="GeneID:1253373" /translation="MPPLKKIVLRLFVGAMVATVTTPALALVCLEDHSAKECAISCAE AMWFMFPICF" regulatory complement(1951727..1951732) /regulatory_class="ribosome_binding_site" /locus_tag="STM1854" /note="putative RBS for STM1854; RegulonDB:STMS1H002022" gene complement(1952009..1952738) /gene="sopE2" /locus_tag="STM1855" /db_xref="GeneID:1253374" CDS complement(1952009..1952731) /gene="sopE2" /locus_tag="STM1855" /note="SopE2 (gi|9651642)" /codon_start=1 /transl_table=11 /product="type III secretion protein SopE2" /protein_id="NP_460811.1" /db_xref="GI:16765196" /db_xref="GeneID:1253374" /translation="MTNITLSTQHYRIHRSDVEPVKEKTTEKDIFAKSITAVRNSFIS LSTSLSDRFSLHQQTDIPTTHFHRGNASEGRAVLTSKTVKDFMLQKLNSLDIKGNASK DPAYARQTCEAILSAVYSNNKDQCCKLLISKGVSITPFLKEIGEAAQNAGLPGEIKNG VFTPGGAGANPFVVPLIASASIKYPHMFINHNQQVSFKAYAEKIVMKEVTPLFNKGTM PTPQQFQLTIENIANKYLQNAS" regulatory complement(1952733..1952738) /regulatory_class="ribosome_binding_site" /gene="sopE2" /locus_tag="STM1855" /note="putative RBS for sopE2; RegulonDB:STMS1H002023" gene 1953404..1953810 /locus_tag="STM1856" /db_xref="GeneID:1253375" regulatory 1953404..1953409 /regulatory_class="ribosome_binding_site" /locus_tag="STM1856" /note="putative RBS for STM1856; RegulonDB:STMS1H002024" CDS 1953415..1953810 /locus_tag="STM1856" /note="similar to E. coli orf, hypothetical protein (AAC74245.1); Blastp hit to AAC74245.1 (134 aa), 40% identity in aa 1 - 127" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460812.1" /db_xref="GI:16765197" /db_xref="GeneID:1253375" /translation="MELQLMLNHFFERVRKDANFNAFLIDLEYNNIAYYIYFVATGNV KIITHAGHFISIKSNRKLIKVNSTPNTQLIKLISAKHFSGEHSYEKYCTDLATAGVFK WIVELNQKTRQYWSKDNQLLYIENVVMPL" gene complement(1955004..1955423) /locus_tag="STM1857" /db_xref="GeneID:1253376" CDS complement(1955004..1955423) /locus_tag="STM1857" /codon_start=1 /transl_table=11 /product="N-acetyltransferase" /protein_id="NP_460813.1" /db_xref="GI:16765198" /db_xref="GeneID:1253376" /translation="MDIQITHQVTEFDKEELLTGLRSYNAQFVDFSKNGQLGVYCRNE SGEMVGGLIADRKGPWLCIDYLWVSESARNCGLGSKLMAMAEKEGLRKGCVHGLVDTF SFQALPFYEKQGYILQMSLPDFPKVGSQRHYLIKPGL" gene 1955787..1956062 /locus_tag="STM1858" /db_xref="GeneID:1253377" regulatory 1955787..1955792 /regulatory_class="ribosome_binding_site" /locus_tag="STM1858" /note="putative RBS for STM1858; RegulonDB:STMS1H002025" CDS 1955793..1956062 /locus_tag="STM1858" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460814.1" /db_xref="GI:16765199" /db_xref="GeneID:1253377" /translation="MKFDNTWNQGVWFALRSATGRPSPQPFSVEDLPALGEEYRRIMK IISAVYTSKKTLSKRWFASAELLNLYLTKYGLSCLNCSRKKTTAC" gene 1956228..1956368 /locus_tag="STM1859" /db_xref="GeneID:1253378" CDS 1956228..1956368 /locus_tag="STM1859" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460815.3" /db_xref="GI:1109557655" /db_xref="GeneID:1253378" /translation="MFRSKRTLPRNLQPYTGQASTEELHTDLNNMRYTELYSIQQMVL QL" gene complement(1956851..1957714) /locus_tag="STM1860" /db_xref="GeneID:2673760" CDS complement(1956851..1957708) /locus_tag="STM1860" /codon_start=1 /transl_table=11 /product="putative transposase" /protein_id="NP_448275.1" /db_xref="GI:1109557656" /db_xref="GeneID:2673760" /translation="MDEKKLKALAVELAKGLKTEADLNSFSRMLAKLTVETVLNAELA DHPGYEKNAPKTGSNTRNGYSSKTVLCDDGEIELNTPRDRENTFEPQLLKKHQTRITQ MDSQILSLYAKGMTTREIVATFKEMYDANVSPSLISKVTDAVKEQVTERQNRQPDALY PIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGEKFWLSVLTEL KTRGVQDILIACVDGLKGFPDAINSVFPQPHIQLCIIHMVRNSLKYVAWKGYKVATSG LRLRPKRRH" regulatory complement(1957709..1957714) /regulatory_class="ribosome_binding_site" /locus_tag="STM1860" /note="putative RBS for STM1860; RegulonDB:STMS1H002026" gene 1957832..1958200 /locus_tag="STM1861" /db_xref="GeneID:1253380" CDS 1957832..1958200 /locus_tag="STM1861" /note="similar to E. coli prophage e14 integrase (AAC74224.1); Blastp hit to AAC74224.1 (375 aa), 43% identity in aa 253 - 366" /codon_start=1 /transl_table=11 /product="integrase" /protein_id="NP_448276.1" /db_xref="GI:1109557657" /db_xref="GeneID:1253380" /translation="MKIALPLSLNLPSMGLRLSTVIERCRLVSRSEYLISAGIRKNSP NGSIHPNSLTKKFVAARKLTGINFSENPPPFHEIRSLSGRLYKDAYGEGFAQKLLGHT SENTTKLYLDERDNKAYVML" gene 1959497..1960418 /gene="pagO" /locus_tag="STM1862" /db_xref="GeneID:1253381" regulatory 1959497..1959502 /regulatory_class="ribosome_binding_site" /gene="pagO" /locus_tag="STM1862" /note="putative RBS for pagO; RegulonDB:STMS1H002027" CDS 1959504..1960418 /gene="pagO" /locus_tag="STM1862" /note="predicted integral membrane protein; PAGO protein. (SW:PAGO_SALTY)" /codon_start=1 /transl_table=11 /product="EamA family transporter" /protein_id="NP_460818.1" /db_xref="GI:16765203" /db_xref="GeneID:1253381" /translation="MRKVSISILFMLVSLTWGTTWLAMRIAVETIPPVFATGMRFMFA APFLIIIAWLRKKTLLFPPGQRLFQFVICIFYFCIPFSLMIYGETYVNSGLAAIIFAN MPVAVLIASVLFLNEKAKLMQIAGLTIAITALTGILLEETNTSTESHWQGITALISAV LIHAIIYTQCKKRSCTVSVITFNALPCLLAGLILSATGWFFERPQVSTFSVHSILATL YLGAFAGVFGILCYFALQQKANAFQASLVFLIFPLIAVSLEDYIYGYAISTHSMLLII PLVIGIFLTLVARNLPVTSRCRDNSSQK" gene 1960544..1960709 /locus_tag="STM1863" /db_xref="GeneID:1253382" regulatory 1960544..1960549 /regulatory_class="ribosome_binding_site" /locus_tag="STM1863" /note="putative RBS for STM1863; RegulonDB:STMS1H002028" CDS 1960551..1960709 /locus_tag="STM1863" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460819.1" /db_xref="GI:16765204" /db_xref="GeneID:1253382" /translation="MFMFLPFLLALSVAMGAINRKDKVSYILWAVLLIVTILSFIHHM TNSLTLSF" gene 1960712..1961333 /locus_tag="STM1864" /db_xref="GeneID:1253383" regulatory 1960712..1960717 /regulatory_class="ribosome_binding_site" /locus_tag="STM1864" /note="putative RBS for STM1864; RegulonDB:STMS1H002029" CDS 1960719..1961333 /locus_tag="STM1864" /codon_start=1 /transl_table=11 /product="disulfide bond formation protein B" /protein_id="NP_460820.1" /db_xref="GI:16765205" /db_xref="GeneID:1253383" /translation="MKTHHHPTTFVHLINQVGLLGICVALVVAFYYQLVRHELPCPIC LLQRAGLIIAGFGFLFNLCFGLRGIHYGMVIIGSILTGVMASRQICLHIMPGDTGYGS AFFGLHFYTWTLITSILIIIAVAVILAISSMNVAFRSLNINPDLFSIVGWVFLLLITA NLISTVLECGGGECAANPVTYKLLSKQDIAFLKTGLLTRTVLRL" gene complement(1961660..1961789) /locus_tag="STM1865" /db_xref="GeneID:1253384" CDS complement(1961660..1961785) /locus_tag="STM1865" /note="similar to E. coli inversion of adjacent DNA; at locus of e14 element (AAC74242.1); Blastp hit to AAC74242.1 (184 aa), 78% identity in aa 143 - 180" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_448280.1" /db_xref="GI:1109557658" /db_xref="GeneID:1253384" /translation="MTPEQWAQAGCLIRAGVPRQQVAIIYDAGLSTLYRKFPVLG" regulatory complement(1961784..1961789) /regulatory_class="ribosome_binding_site" /locus_tag="STM1865" /note="putative RBS for STM1865; RegulonDB:STMS1H002030" gene complement(1962086..1962268) /locus_tag="STM1866" /note="pseudogene; in-frame stop following codon 23" /pseudo /db_xref="GeneID:1253385" gene 1963169..1963376 /gene="pagK" /locus_tag="STM1867" /db_xref="GeneID:1253386" regulatory 1963169..1963174 /regulatory_class="ribosome_binding_site" /gene="pagK" /locus_tag="STM1867" /note="putative RBS for pagK; RegulonDB:STMS1H002032" CDS 1963176..1963376 /gene="pagK" /locus_tag="STM1867" /note="PagK (gi|2582047)" /codon_start=1 /transl_table=11 /product="phage virulence factor" /protein_id="NP_460822.1" /db_xref="GI:16765207" /db_xref="GeneID:1253386" /translation="MKHVKSVFLAMVLILPSSLYPALTIAADSQDHKKEETIKPMPQK WCNLWPAGIPFPEDWFKMCRGY" gene complement(1963473..1964361) /gene="mig-3" /locus_tag="STM1868" /db_xref="GeneID:1253387" CDS complement(1963473..1964354) /gene="mig-3" /locus_tag="STM1868" /note="phage tail assembly protein (gi|2460256)" /codon_start=1 /transl_table=11 /product="phage tail protein" /protein_id="NP_460823.1" /db_xref="GI:16765208" /db_xref="GeneID:1253387" /translation="MYIGPHGHVVIVDADGNAETFGLMDGGVDAAITAYFGSQLQERV QQNIIREYLGEQPVGTAFVIETGNSKHPWLVPAPTMRVPLIIDGTDAVYNATRAALLA IFQHNKSAGEDRKITSVALPAMGAGCGQVPPGQRRPANCTDIAPPDIPSSHIAVFDAE TQTWSLQEDHRGETVYDTTTGNQVYISDLGPLPENVTSVSPGGGYKKWDSKAQVWMND EAAEAAARLREAEGTKNRLLQIASEKIAPLQDAVDLDEATNKEKASLLAWRKYRVQVN RVDTLKPVWPEKPASSL" regulatory complement(1964356..1964361) /regulatory_class="ribosome_binding_site" /gene="mig-3" /locus_tag="STM1868" /note="putative RBS for mig-3; RegulonDB:STMS1H002033" gene 1965080..1965247 /locus_tag="STM1868A" /db_xref="GeneID:1253388" CDS 1965080..1965247 /locus_tag="STM1868A" /codon_start=1 /transl_table=11 /product="lytic enzyme" /protein_id="NP_460824.1" /db_xref="GI:16765209" /db_xref="GeneID:1253388" /translation="MKNIITIIVAIIIVFYAGMWSQKFLMEDECLDSGGSYNENGICN IAGSHQDVPPK" gene complement(1965504..1966048) /locus_tag="STM1869" /db_xref="GeneID:1253389" CDS complement(1965504..1966037) /locus_tag="STM1869" /note="similar to E. coli orf, hypothetical protein (AAC74626.1); Blastp hit to AAC74626.1 (165 aa), 67% identity in aa 6 - 163" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460825.1" /db_xref="GI:16765210" /db_xref="GeneID:1253389" /translation="MNLLSALLKRYWLQLVFILLMAGAFIAGNVWSDRGWQKKWADRD SAESSQEVNAQTAARIIEQGRVIARDEAVKDAQAQAAKSAATAAGLSATVSQLRTEAK KLATRLDAAKHTANLAAAVRSKTTNADARMLANMLGDIAEAAKHYAGIADERYRAGMT CERVYDSVRESNNYRRH" regulatory complement(1966043..1966048) /regulatory_class="ribosome_binding_site" /locus_tag="STM1869" /note="putative RBS for STM1869; RegulonDB:STMS1H002034" gene complement(1966091..1966378) /locus_tag="STM1869A" /db_xref="GeneID:1253390" CDS complement(1966091..1966378) /locus_tag="STM1869A" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460826.1" /db_xref="GI:16765211" /db_xref="GeneID:1253390" /translation="MGCWGVIRHIFVPVRIANAMNGKKAFAPRSAKIRITGLENYTRC GVALKLDLVANPGQLELERHAARSAAWLFVTKGCLKYSGDLVRVTQIINGG" gene 1966507..1967005 /locus_tag="STM1870" /db_xref="GeneID:1253391" regulatory 1966507..1966512 /regulatory_class="ribosome_binding_site" /locus_tag="STM1870" /note="putative RBS for STM1870; RegulonDB:STMS1H002035" CDS 1966511..1967005 /locus_tag="STM1870" /note="similar to E. coli exonuclease VIII, ds DNA exonuclease, 5' --> 3' specific (AAC74432.1); Blastp hit to AAC74432.1 (866 aa), 52% identity in aa 406 - 521, 20% identity in aa 543 - 585" /codon_start=1 /transl_table=11 /product="recE-like protein" /protein_id="NP_460827.1" /db_xref="GI:16765212" /db_xref="GeneID:1253391" /translation="MEQDTTEHHPDPQPLENEPPVSQTEAGYQKIRAELHEARKNIPP KNPVDVGKQLAAARGEYVEDISDPNDPRWVHNNYSASNQGEKEEVVPEGKQPAAEPEA VTRNADGTFDVSALFLPPSNQTEKTEARTERDGETPKESNQQETAGDTGQEITTDGGS GTTS" gene 1967023..1967919 /locus_tag="STM1871" /db_xref="GeneID:1253392" CDS 1967023..1967919 /locus_tag="STM1871" /note="similar to E. coli prophage e14 integrase (AAC74224.1); Blastp hit to AAC74224.1 (375 aa), 39% identity in aa 78 - 366" /codon_start=1 /transl_table=11 /product="putative phage integrase protein" /protein_id="NP_448287.1" /db_xref="GI:1109557659" /db_xref="GeneID:1253392" /translation="MALIEKLKGTDSFTVSAWIDRYEVLLQRRNLSVNTYKIRSNQLA TVREKMGEIILAEVTTRHIAKFLESWITEGKNTMAGAMRSVLSDMFREAIVEGHIVKN PVEATRIPEIKVARERLQLETYNATRAAAEHMPAWFPLAMDLALVTGQRREDIVNMKF SDVFDNRLYVTQIKTGMKIAIPLSLTLRATGLRLGTVIDRCRLVSRTDFMISAGIRKN SPTGNIHPDGLTKTFVKARKASGVNFSNNPPTFHEIRSLAGRLYKNEHGEVFAQKLLG HTSENTTKLYLDERDNKAYVML" gene complement(1968116..1968239) /locus_tag="STM1872" /db_xref="GeneID:1253393" CDS complement(1968116..1968235) /locus_tag="STM1872" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460829.1" /db_xref="GI:16765214" /db_xref="GeneID:1253393" /translation="MITDKTPGFFNHLRRKLENLASSSILKGQGDLACINANF" regulatory complement(1968234..1968239) /regulatory_class="ribosome_binding_site" /locus_tag="STM1872" /note="putative RBS for STM1872; RegulonDB:STMS1H002036" gene complement(1968293..1968663) /locus_tag="STM1873" /db_xref="GeneID:1253394" CDS complement(1968293..1968646) /locus_tag="STM1873" /note="similar to E. coli orf, hypothetical protein (AAC74909.1); Blastp hit to AAC74909.1 (113 aa), 82% identity in aa 2 - 113" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460830.1" /db_xref="GI:16765215" /db_xref="GeneID:1253394" /translation="MKKILLPALLLATSGVALAAPQVITVSRFEVGKDKWAFNREEVM LTCRPGQALYVINPSTLVQYPLNAIAEQQVAEGKTRAQPIAVIQIDNPAKPGEKMSLA PFIERAQKLCDPSNS" regulatory complement(1968658..1968663) /regulatory_class="ribosome_binding_site" /locus_tag="STM1873" /note="putative RBS for STM1873; RegulonDB:STMS1H002037" gene complement(1968663..1969547) /locus_tag="STM1874" /db_xref="GeneID:1253395" CDS complement(1968663..1969538) /locus_tag="STM1874" /note="similar to E. coli putative resistance protein (AAC74910.1); Blastp hit to AAC74910.1 (290 aa), 64% identity in aa 1 - 290" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460831.1" /db_xref="GI:16765216" /db_xref="GeneID:1253395" /translation="MMLTFVWITLRFIHFASVMLVYGCALYGAWLAPASIRRLMTRRF LHLQQHAAAWSVISAAFMLAVQGGLMGGGWPDVFFVSVWGAVLQTRFGAVWIWQIILA LVTLAVVVIAPVKMQRRLLILTVAQFILLAGVGHATMRDGVAGTLQQINHALHLLCAA AWFGGLLPVVYCMRMAQGRWRQHAISAMMRFSRYGHFFVAGVLLTGIGNTLFITGFTA IWQTTYGQLLLLKCALVVLMVAIALTNRYVLVPRMRQENPRTDLWFVRMTQIEWGVGG IVLAIVSLFATLEPF" gene complement(1969539..1969927) /gene="yobA" /locus_tag="STM1875" /db_xref="GeneID:1253396" CDS complement(1969539..1969913) /gene="yobA" /locus_tag="STM1875" /note="similar to E. coli orf, hypothetical protein (AAC74911.1); Blastp hit to AAC74911.1 (124 aa), 74% identity in aa 1 - 124" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460832.1" /db_xref="GI:16765217" /db_xref="GeneID:1253396" /translation="MASSAPSRRLALLLLASTFATPAAWAHAHLTHQYPAANAAVTAS PQALTLNFSEGIEPGFSGATITGPQQELIKTRPAKRNEQDKTQLIIPLEQPLKSGAYT VDWHVVSVDGHKTKGKYTFSVK" regulatory complement(1969542..1969547) /regulatory_class="ribosome_binding_site" /gene="yobA" /locus_tag="STM1875" /note="putative RBS for STM1874; RegulonDB:STMS1H002038" regulatory complement(1969922..1969927) /regulatory_class="ribosome_binding_site" /gene="yobA" /locus_tag="STM1875" /note="putative RBS for yobA; RegulonDB:STMS1H002039" gene 1970039..1970281 /gene="holE" /locus_tag="STM1876" /db_xref="GeneID:1253397" regulatory 1970039..1970044 /regulatory_class="ribosome_binding_site" /gene="holE" /locus_tag="STM1876" /note="putative RBS for holE; RegulonDB:STMS1H002040" CDS 1970051..1970281 /gene="holE" /locus_tag="STM1876" /EC_number="2.7.7.7" /note="similar to E. coli DNA polymerase III, theta subunit (AAC74912.1); Blastp hit to AAC74912.1 (76 aa), 88% identity in aa 1 - 76" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit theta" /protein_id="NP_460833.1" /db_xref="GI:16765218" /db_xref="GeneID:1253397" /translation="MKTNLAQLEQAEMDKVNVDLAAAGVAFKERYNMPVVAEAVEREQ PEHLRAWFRERLIAHRLASVSLSRLPYEPKVK" gene 1970377..1971045 /locus_tag="STM1877" /db_xref="GeneID:1253398" regulatory 1970377..1970382 /regulatory_class="ribosome_binding_site" /locus_tag="STM1877" /note="putative RBS for STM1877; RegulonDB:STMS1H002041" CDS 1970389..1971045 /locus_tag="STM1877" /note="similar to E. coli orf, hypothetical protein (AAC74913.1); Blastp hit to AAC74913.1 (218 aa), 65% identity in aa 1 - 218" /codon_start=1 /transl_table=11 /product="carbon-nitrogen hydrolase" /protein_id="NP_460834.1" /db_xref="GI:16765219" /db_xref="GeneID:1253398" /translation="MSSWKIAAAQYAPLNASPAEHVAHHLEYIELAARQQCELLVFPS LSLLGCDERNKSLPAPPDEALLQPLTHAADTHHMTIIVGMPVEHNCRFVKGIAIFAPW LTSPLMFHKSHGACIARQRSAINVVDEQPEGGDIDPSFTLFTTSQCLNEPELHASTSR LQRFSHKYALAVLMANACGSSALWNESGQLIVRADCGSLLLTGLRTTEGWQGDIIPLR " gene 1971057..1971767 /gene="exoX" /locus_tag="STM1878" /db_xref="GeneID:1253399" regulatory 1971057..1971062 /regulatory_class="ribosome_binding_site" /gene="exoX" /locus_tag="STM1878" /note="putative RBS for exoX; RegulonDB:STMS1H002042" CDS 1971069..1971767 /gene="exoX" /locus_tag="STM1878" /EC_number="3.1.11.-" /note="degrades ss and ds DNA with 3'-5' polarity; similar to E. coli orf, hypothetical protein (AAC74914.1); Blastp hit to AAC74914.1 (220 aa), 90% identity in aa 1 - 219" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease X" /protein_id="NP_460835.1" /db_xref="GI:16765220" /db_xref="GeneID:1253399" /translation="MLRIIDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDRPIT PQAMAIHRITEAMVADKPWIEDVIPLYYGSEWYVAHNASFDRRVLPELPGEWICTMKL SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRTTGWTAEE MVNITGRPALLTTFPFGKYRGKAVSEVAKRDPGYLRWLFNNLDNMSPELRLTLKHYLE DVQAGEQRSNGTPQ" gene complement(1971802..1973866) /gene="ptrB" /locus_tag="STM1879" /db_xref="GeneID:1253400" CDS complement(1971802..1973853) /gene="ptrB" /locus_tag="STM1879" /EC_number="3.4.21.83" /note="similar to E. coli protease II (AAC74915.1); Blastp hit to AAC74915.1 (686 aa), 89% identity in aa 1 - 680" /codon_start=1 /transl_table=11 /product="oligopeptidase B" /protein_id="NP_460836.1" /db_xref="GI:16765221" /db_xref="GeneID:1253400" /translation="MLPKANRIPYAMTVHGDTRIDNYYWLRDDTRSQPEVLDYLHQEN EYGRKVMTSQQALQDRILKEIIDRIPPREVSAPYVKNGYRYRYIYEPGCEYAIYQRQS ALSEEWDVWETLLDANQRAAHSEFYTLGGLAITPDNTIMALAEDYLSRRQYGLRFRNL ESGNWYPELLDNVAPEFVWANDSLTLYYVRKHKKTLLPYQVWRHTIGTPSSQDELVYE EKDDTFYVSLHKTTSQHYVVIHLASATTSEVLLLDAELADAEPFSFLPRRKDHEYSLD HYQHKFYLRSNRNGKNFGLYRTRVRNENAWEELIPPREHIMLEGFTLFTDWLVVEERQ RGLTSLRQINRKTREVIGIAFDDPAYVTWLAYNPEPETSRLRYGYSSMTTPDTLFELD MDTGERRVLKQTEVPGFDSGCYQSEHLWITARDGVEVPVSLVYHQKYFRKGQNPLLVY GYGSYGSSIDADFSSSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKRNTFNDY LDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINERPELFHGVIAQVPFVDVLTTML DESIPLTTGEFEEWGNPQDIEYYDYMKSYSPYDNVKAQDYPHLLVTTGLHDSQVQYWE PAKWVAKLRELKTDQRLLLLCTDMDSGHGGKSGRFKSYEGVALEFAFLIGLAQGTLHS A" regulatory complement(1973861..1973866) /regulatory_class="ribosome_binding_site" /gene="ptrB" /locus_tag="STM1879" /note="putative RBS for ptrB; RegulonDB:STMS1H002043" gene complement(1974066..1974735) /gene="yebE" /locus_tag="STM1880" /db_xref="GeneID:1253401" CDS complement(1974066..1974725) /gene="yebE" /locus_tag="STM1880" /note="similar to E. coli orf, hypothetical protein (AAC74916.1); Blastp hit to AAC74916.1 (219 aa), 86% identity in aa 1 - 217" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460837.1" /db_xref="GI:16765222" /db_xref="GeneID:1253401" /translation="MANWLNQLQSLLGQKGASASPSGEQGLNKLLVPGALGGLAGLLV ANKSSRKLLTKYGTGALLVGGGAVAGSVLWNKYKDKVRAAHQGEPQFGSQSTPLDVRT ERLILALVFAAKSDGHIDAKERAAIEHQLRESGVEEQGRVFIEKAIEQPLDPQRLAQG IRNEEEALEIYFLSCAAIDIDHFMERSYLNALGDALKIPQEVRDGIEQDLQQQKQALP G" regulatory complement(1974730..1974735) /regulatory_class="ribosome_binding_site" /gene="yebE" /locus_tag="STM1880" /note="putative RBS for yebE; RegulonDB:STMS1H002044" gene complement(1974819..1975184) /gene="yebF" /locus_tag="STM1881" /db_xref="GeneID:1253402" CDS complement(1974819..1975172) /gene="yebF" /locus_tag="STM1881" /note="similar to E. coli orf, hypothetical protein (AAC74917.1); Blastp hit to AAC74917.1 (122 aa), 76% identity in aa 5 - 122" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460838.1" /db_xref="GI:16765223" /db_xref="GeneID:1253402" /translation="MNKRGALLSLLFLSASVSAFAASTESKSVKFPQCEGLDAAGIAA SVKRDYQQNRIVRWADDQKKVGQADPVAWVNVQDVVGQNDKWTVPLTVRGKSADIHYQ VIVDCKAGKAEYKPR" regulatory complement(1975179..1975184) /regulatory_class="ribosome_binding_site" /gene="yebF" /locus_tag="STM1881" /note="putative RBS for yebF; RegulonDB:STMS1H002045" gene complement(1975240..1975543) /gene="yebG" /locus_tag="STM1882" /db_xref="GeneID:1253403" CDS complement(1975240..1975530) /gene="yebG" /locus_tag="STM1882" /note="similar to E. coli orf, hypothetical protein (AAC74918.1); Blastp hit to AAC74918.1 (96 aa), 79% identity in aa 1 - 96" /codon_start=1 /transl_table=11 /product="damage-inducible protein YebG" /protein_id="NP_460839.1" /db_xref="GI:16765224" /db_xref="GeneID:1253403" /translation="MAVEVKYVVIREGEEKMSFTSKKEADAWDKMLDTADLLDTWLEQ SPVVLEDGQREALSLWLAEHKEVLSTILKTGKLPSPQAVEKDAASKTKKQAA" regulatory complement(1975538..1975543) /regulatory_class="ribosome_binding_site" /gene="yebG" /locus_tag="STM1882" /note="putative RBS for yebG; RegulonDB:STMS1H002046" gene 1975647..1976839 /gene="purT" /locus_tag="STM1883" /db_xref="GeneID:1253404" regulatory 1975647..1975652 /regulatory_class="ribosome_binding_site" /gene="purT" /locus_tag="STM1883" /note="putative RBS for purT; RegulonDB:STMS1H002047" CDS 1975661..1976839 /gene="purT" /locus_tag="STM1883" /EC_number="2.1.2.-" /note="similar to E. coli phosphoribosylglycinamide formyltransferase 2 (AAC74919.1); Blastp hit to AAC74919.1 (392 aa), 87% identity in aa 1 - 392" /codon_start=1 /transl_table=11 /product="phosphoribosylglycinamide formyltransferase 2" /protein_id="NP_460840.1" /db_xref="GI:16765225" /db_xref="GeneID:1253404" /translation="MTLLGTALRPAATRVMLLGAGELGKEVAIECQRLGIEVIAVDRY PDAPAMHVAHRSHVINMLDGEALRHVITEEKPHYIVPEIEAIATDTLRELEGEGLNVV PCARATQLTMNREGIRRLAAEELGLPTSTYRFADSEASFHDAVAAVGFPCIVKPVMSS SGKGQSFIRSAEQLAQAWEYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFC APVGHRQQDGDYRESWQPQQMSELALKRAQEIARHVVLALGGHGLFGVELFVCGDEVI FSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGMPVGAIRQYGPAASAVILPQLTSQN VTFDNVHAAVGAGVQVRLFGKPEIDGTRRLGVALATGENVEEAVIRAKKAVSRVTVKG " gene complement(1976939..1977754) /gene="eda" /locus_tag="STM1884" /db_xref="GeneID:1253405" CDS complement(1976939..1977580) /gene="eda" /locus_tag="STM1884" /EC_number="4.1.2.14" /EC_number="4.1.1.3" /EC_number="4.1.3.16" /note="multifunctional; similar to E. coli 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase (AAC74920.1); Blastp hit to AAC74920.1 (213 aa), 97% identity in aa 1 - 212" /codon_start=1 /transl_table=11 /product="keto-deoxy-phosphogluconate aldolase" /protein_id="NP_460841.1" /db_xref="GI:16765226" /db_xref="GeneID:1253405" /translation="MKNWKTSAEAILTTGPVVPVIVVNKLEHAVPMAKALVAGGVRVL EVTLRTACAMDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLK AATAGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGTKALQAIAGPFSQVRFCP TGGISPANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAREAVEGAKQ" regulatory complement(1977595..1977600) /regulatory_class="ribosome_binding_site" /gene="eda" /locus_tag="STM1884" /note="putative RBS for eda; RegulonDB:STMS1H002048" gene complement(1977618..1979494) /gene="edd" /locus_tag="STM1885" /db_xref="GeneID:1253406" CDS complement(1977618..1979429) /gene="edd" /locus_tag="STM1885" /EC_number="4.2.1.12" /note="similar to E. coli 6-phosphogluconate dehydratase (AAC74921.1); Blastp hit to AAC74921.1 (603 aa), 94% identity in aa 1 - 603" /codon_start=1 /transl_table=11 /product="phosphogluconate dehydratase" /protein_id="NP_460842.1" /db_xref="GI:16765227" /db_xref="GeneID:1253406" /translation="MNPNLLRVTQRIVERSQQTREAYLARIEQAKTATVHRSQLACGN LAHGFAACQPEDKASLKSMLRNNIAIITSYNDMLSAHQPYEHYPQIIRQALHSVNAVG QVAGGVPAMCDGVTQGQDGMELSLLSREVIAMSAAVGLSHNMFDGALFLGVCDKIVPG LAMAALSFGHLPAIFVPSGPMASGLPNKEKVRIRQLYAEGKVDRMALLESEAASYHAP GTCTFYGTANTNQMVVEFMGMQLPGSSFVHPDAPLREALTAAAARQVTRLTGNGNTWM PLGKMIDEKVVVNGIVALLATGGSTNHTMHLVAMARAAGILINWDDFSDLSEVVPLMA RLYPNGPADINHFQAAGGVPVLMRELLNAGLLHEDVNTVAGFGLKRYTLEPWLNNGEL DWREGAERSLDNDVIASFDKPFSPHGGTKVLSGNLGRAVMKTSAVPVENQIIEAPAMV FESQHDVLPAFDAGLLDRDCVVVVRHQGPKANGMPELHKLMPPLGVLLDRRFKIALVT DGRLSGASGKVPSAIHVTPEAYDGGLLAKVRDGDIIRVNGQTGELTLLVDEAELAARQ PHIPDLSASRVGTGRELFGALREKLSGAEQGATCITF" regulatory complement(1977730..1977738) /regulatory_class="minus_10_signal" /gene="eda" /locus_tag="STM1884" /note="putative -10_signal for eda; RegulonDB:STMLTH004515" regulatory complement(1977746..1977754) /regulatory_class="minus_35_signal" /gene="eda" /locus_tag="STM1884" /note="putative -35_signal for eda; RegulonDB:STMLTH004515" regulatory complement(1979435..1979440) /regulatory_class="ribosome_binding_site" /gene="edd" /locus_tag="STM1885" /note="putative RBS for edd; RegulonDB:STMS1H002049" regulatory complement(1979470..1979478) /regulatory_class="minus_10_signal" /gene="edd" /locus_tag="STM1885" /note="putative -10_signal for edd; RegulonDB:STMLTH004516" regulatory complement(1979486..1979494) /regulatory_class="minus_35_signal" /gene="edd" /locus_tag="STM1885" /note="putative -35_signal for edd; RegulonDB:STMLTH004516" gene complement(1979664..1981336) /gene="zwf" /locus_tag="STM1886" /db_xref="GeneID:1253407" CDS complement(1979664..1981139) /gene="zwf" /locus_tag="STM1886" /EC_number="1.1.1.49" /note="similar to E. coli glucose-6-phosphate dehydrogenase (AAC74922.1); Blastp hit to AAC74922.1 (491 aa), 97% identity in aa 1 - 491" /codon_start=1 /transl_table=11 /product="glucose-6-phosphate dehydrogenase" /protein_id="NP_460843.1" /db_xref="GI:16765228" /db_xref="GeneID:1253407" /translation="MAVTQTAQACDLVIFGAKGDLARRKLLPSLYQLEKAGQIHPDTR IIGVGRADWDKEAYTHVVREALETFMKEKIDEGLWDTLSGRLDFCNLDVNDTPAFSRL GDMLDQKNRTTINYFAMPPSTFGAICKGLGEAKLNAKPARVVMEKPLGTSLATSREIN DRVGEYFEECQVYRIDHYLGKETVLNLLALRFANSLFVNNWDNRTIDHVEITVAEEVG IEGRWGYFDQAGQMRDMIQNHLLQILCMIAMSPPSDLSADSIRDEKVKVLKSLRRIDR SNVREKTVRGQYTAGFAQGQKVPGYLEEEGANKSSNTETFVAIRVDIDNWRWAGVPFY LRTGKRLPTKCSEVVVYFKTPELNLFKESWQDLPQNKLTIRLQPDEGVDIQVLNKVPG LDHKHNLQITKLDLSYSETFNQTHLADAYERLLLETMRGIQALFVRRDEVEEAWKWVD SITEAWAMDNDAPKPYQAGTWGPVASVAMITRDGRSWNEFE" regulatory complement(1981146..1981151) /regulatory_class="ribosome_binding_site" /gene="zwf" /locus_tag="STM1886" /note="putative RBS for zwf; RegulonDB:STMS1H002050" regulatory complement(1981309..1981317) /regulatory_class="minus_10_signal" /gene="zwf" /locus_tag="STM1886" /note="putative -10_signal for zwf; RegulonDB:STMLTH004517" regulatory complement(1981328..1981336) /regulatory_class="minus_35_signal" /gene="zwf" /locus_tag="STM1886" /note="putative -35_signal for zwf; RegulonDB:STMLTH004517" protein_bind complement(1981431..1981449) /note="putative binding site for SoxS, RegulonDB: STMS1H000366" /bound_moiety="SoxS" gene 1981481..1982350 /gene="yebK" /locus_tag="STM1887" /db_xref="GeneID:1253408" CDS 1981481..1982350 /gene="yebK" /locus_tag="STM1887" /note="similar to E. coli orf, hypothetical protein (AAC74923.1); Blastp hit to AAC74923.1 (289 aa), 92% identity in aa 1 - 289" /codon_start=1 /transl_table=11 /product="transcriptional regulator HexR" /protein_id="NP_460844.1" /db_xref="GI:16765229" /db_xref="GeneID:1253408" /translation="MNMLEKVQSQLEHLSKSERKVADVILAAPGRSIHLSIAMLAQEA NVSEPTVNRFCRSMNTRGFPDFKLHLAQSLANGTPYVNRNVDEDDSVEAYTGKIFESA MASLDHVRQSLDKSAVNRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVIYS DDIVLQRMSCMNCSDDDVVVLISHTGRTKSLVELAQLARENDAMVIALTSAGTPLARE ATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES RFDKELLIKSDDR" gene 1982462..1983916 /gene="pykA" /locus_tag="STM1888" /db_xref="GeneID:1253409" regulatory 1982462..1982467 /regulatory_class="ribosome_binding_site" /gene="pykA" /locus_tag="STM1888" /note="putative RBS for pykA; RegulonDB:STMS1H002051" CDS 1982474..1983916 /gene="pykA" /locus_tag="STM1888" /EC_number="2.7.1.40" /note="glucose stimulated; similar to E. coli pyruvate kinase II, glucose stimulated (AAC74924.1); Blastp hit to AAC74924.1 (480 aa), 98% identity in aa 1 - 480" /codon_start=1 /transl_table=11 /product="pyruvate kinase" /protein_id="NP_460845.1" /db_xref="GI:16765230" /db_xref="GeneID:1253409" /translation="MSRRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSP EDHKMRADKVREIAAKLGRHVAILGDLQGPKIRVSTFKEGKVFLNIGDKFLLDANLGK GEGDKEKVGIDYKGLPADVVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNK GINKLGGGLSAEALTEKDKADIQTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDA KIVAKVERAEAVCDQNAMDDIILASDVVMVARGDLGVEIGDPELVGIQKALIRRARQL NRAVITATQMMESMITNPMPTRAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAM ARVCLGAEKIPSINVSKHRLDVQFDNVEEAIAMSAMYAANHLKGVTAIITMTESGRTA LMTSRISSGLPIFAMSRHERTLNLTALYRGVTPVHFDSAADGVVAAHEAVNLLRDKGY LVSGDLVIVTQGDVMSTVGSTNTTRILTVE" gene complement(1983989..1984970) /gene="msbB" /locus_tag="STM1889" /db_xref="GeneID:1253410" CDS complement(1983989..1984960) /gene="msbB" /locus_tag="STM1889" /EC_number="2.3.1.-" /note="suppressor of htrB (lpxL); similar to E. coli suppressor of htrB, heat shock protein (AAC74925.1); Blastp hit to AAC74925.1 (323 aa), 93% identity in aa 1 - 323" /codon_start=1 /transl_table=11 /product="lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase" /protein_id="NP_460846.1" /db_xref="GI:16765231" /db_xref="GeneID:1253410" /translation="METKKNNSEYIPEFEKSFRYPQYWGAWLGAAAMAGIALTPASFR DPLLATLGRFAGRLGKSSRRRALINLSLCFPQRSEAEREAIVDEMFATAPQAMAMMAE LAMRGPKKIQQRVDWEGLEIIEEMRRNDEKVIFLVPHGWGVDIPAMLMASQGQKMAAM FHNQGNPVFDYIWNTVRRRFGGRLHARNDGIKPFIQSVRQGYWGYYLPDQDHGPEHSE FVDFFATYKATLPAIGRLMKVCRARVIPLFPVYNGKTHRLTIQIRPPMDDLLTADDHT IARRMNEEVEIFVGPHPEQYTWILKLLKTRKPGEIQPYKRKDLYPIK" regulatory complement(1984965..1984970) /regulatory_class="ribosome_binding_site" /gene="msbB" /locus_tag="STM1889" /note="putative RBS for msbB; RegulonDB:STMS1H002052" gene complement(1985077..1986410) /gene="yebA" /locus_tag="STM1890" /db_xref="GeneID:1253411" CDS complement(1985077..1986396) /gene="yebA" /locus_tag="STM1890" /note="similar to E. coli orf, hypothetical protein (AAC74926.1); Blastp hit to AAC74926.1 (419 aa), 91% identity in aa 1 - 419" /codon_start=1 /transl_table=11 /product="murein DD-endopeptidase MepM" /protein_id="NP_460847.1" /db_xref="GI:16765232" /db_xref="GeneID:1253411" /translation="MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHPE SAPIVKTIELEKSEIRSLLPEASEPIDQAAQEDEAIPQDELDDKTAGEVGVHEYVVST GDTLSSILNQYGIDMSDISRLAASDKELRNLKIGQQLSWTLTADGDLQRLTWEVSRRE TRTYDRTANGFKMSSEMQQGDWVNSLLKGTVGGSFVASAKEAGLTSSEISAVIKAMQW QMDFRKLKKGDEFSVLMSREMLDGKREQSQLLGVRMRSDGKDYYAIRAADGKFYDRNG VGLAKGFLRFPTAKQFRISSNFNPRRLNPVTGRVAPHRGVDFAMPQGTPVLSVGDGEV VVAKRSGAAGYYIAIRHGRTYTTRYMHLRKLLVKPGQKVKRGDRIALSGNTGRSTGPH LHYEVWINQQAVNPLTAKLPRTEGLTGSDRREYLAQVKEVLPQLRFD" regulatory complement(1986405..1986410) /regulatory_class="ribosome_binding_site" /gene="yebA" /locus_tag="STM1890" /note="putative RBS for yebA; RegulonDB:STMS1H002053" gene complement(1986412..1987426) /gene="znuA" /locus_tag="STM1891" /db_xref="GeneID:1253412" CDS complement(1986412..1987413) /gene="znuA" /locus_tag="STM1891" /note="binding protein; similar to E. coli putative adhesin (AAC74927.1); Blastp hit to AAC74927.1 (328 aa), 85% identity in aa 1 - 328" /codon_start=1 /transl_table=11 /product="ABC superfamily high affinity Zn transport protein" /protein_id="NP_460848.3" /db_xref="GI:1109557660" /db_xref="GeneID:1253412" /translation="MIECYNITFHTFITMISRIMLQKNTLLFAALSAALWGSATQAAD AAVVASLKPLGFIASAIADGVTDTQVLLPDGASEHDYSLRPSDVKRLQGADLVVWVGP EMEAFMEKSVRNIPDNKQVTIAQLADVKPLLMKGADDDEDEHAHTGADEEKGDVHHHH GEYNMHLWLSPEIARATAVAIHEKLVELMPQSRAKLDANLKDFEAQLAATDKQVGNEL APLKGKGYFVFHDAYGYYEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCV FAEPQFRPAVVEAVARGTSVRMGTLDPLGTNIKLGKTSYSAFLSQLANQYASCLKGD" gene 1987384..1988190 /gene="znuC" /locus_tag="STM1892" /db_xref="GeneID:1253413" CDS 1987384..1988190 /gene="znuC" /locus_tag="STM1892" /note="ATP-binding protein; similar to E. coli putative ATP-binding component of a transport system (AAC74928.1); Blastp hit to AAC74928.1 (251 aa), 95% identity in aa 1 - 251" /codon_start=1 /transl_table=11 /product="ABC superfamily high affinity Zn transport protein" /protein_id="NP_460849.3" /db_xref="GI:1109557661" /db_xref="GeneID:1253413" /translation="MKCDIITFYHFCKPKINMTSLVSLENVSVSFGQRRVLSDVSLEL SPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKHNGQLRIGYVPQKLYLDTTLPLT VNRFLRLRPGTQKTDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLV LDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHICCS GAPEVVSMHPEFISMFGPRGAEQLGIYRHHHNHRHDLQGRIVLRRGNGHS" regulatory complement(1987421..1987426) /regulatory_class="ribosome_binding_site" /gene="znuA" /locus_tag="STM1891" /note="putative RBS for znuA; RegulonDB:STMS1H002054" gene 1988169..1988972 /gene="znuB" /locus_tag="STM1893" /db_xref="GeneID:1253414" regulatory 1988169..1988174 /regulatory_class="ribosome_binding_site" /gene="znuB" /locus_tag="STM1893" /note="putative RBS for zunB; RegulonDB:STMS1H002055" CDS 1988187..1988972 /gene="znuB" /locus_tag="STM1893" /note="ATP-binding protein; similar to E. coli orf, hypothetical protein (AAC74929.1); Blastp hit to AAC74929.1 (261 aa), 96% identity in aa 1 - 261" /codon_start=1 /transl_table=11 /product="zinc ABC transporter permease" /protein_id="NP_460850.1" /db_xref="GI:16765235" /db_xref="GeneID:1253414" /translation="MIELLLPGWLAGMMLACAAGPLGSFVVWRRMSYFGDTLAHASLL GVAFGLLLDVNPFYAVIAVTLLLAAGLVWLEKRPHLAIDTLLGIMAHSALSLGLVVVS LMSNVRVDLMAYLFGDLLAVTPEDLISIAIGVVIVLAILFWQWRNLLSMTISPDLAFV DGVKLQRVKLLLMLVTALTIGVAMKFVGALIITSLLIIPAATARRFARTPEQMAGVAV GVGMIAVTGGLTFSAFYDTPAGPSVVLCAALLFIFSMMKKQAS" gene complement(1989051..1990071) /gene="ruvB" /locus_tag="STM1894" /db_xref="GeneID:1253415" CDS complement(1989051..1990061) /gene="ruvB" /locus_tag="STM1894" /note="similar to E. coli Holliday junction helicase subunit A; branch migration; repair (AAC74930.1); Blastp hit to AAC74930.1 (336 aa), 96% identity in aa 1 - 336" /codon_start=1 /transl_table=11 /product="Holliday junction DNA helicase RuvB" /protein_id="NP_460851.1" /db_xref="GI:16765236" /db_xref="GeneID:1253415" /translation="MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIF IQAAKRRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLT NLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARG TPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKF FGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE MP" regulatory complement(1990066..1990071) /regulatory_class="ribosome_binding_site" /gene="ruvB" /locus_tag="STM1894" /note="putative RBS for ruvB; RegulonDB:STMS1H002056" gene complement(1990070..1990693) /gene="ruvA" /locus_tag="STM1895" /db_xref="GeneID:1253416" CDS complement(1990070..1990681) /gene="ruvA" /locus_tag="STM1895" /note="similar to E. coli Holliday junction helicase subunit B; branch migration; repair (AAC74931.1); Blastp hit to AAC74931.1 (203 aa), 94% identity in aa 1 - 203" /codon_start=1 /transl_table=11 /product="Holliday junction DNA helicase RuvA" /protein_id="NP_460852.1" /db_xref="GI:16765237" /db_xref="GeneID:1253416" /translation="MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQE AIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAV EREELGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPTSEDAE QEAVAALVALGYKPQEASRMVSKIARPDASSETLIRDALRAAL" regulatory complement(1990688..1990693) /regulatory_class="ribosome_binding_site" /gene="ruvA" /locus_tag="STM1895" /note="putative RBS for ruvA; RegulonDB:STMS1H002057" gene 1991096..1991997 /locus_tag="STM1896" /db_xref="GeneID:1253417" regulatory 1991096..1991101 /regulatory_class="ribosome_binding_site" /locus_tag="STM1896" /note="putative RBS for STM1896; RegulonDB:STMS1H002058" CDS 1991101..1991997 /locus_tag="STM1896" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460853.1" /db_xref="GI:16765238" /db_xref="GeneID:1253417" /translation="MAIEQQAIAYTVSQKWDKLDAMFQEYNTGFPTTSGGTHKLVIAW GGIYNLFSVDVSDNGISGVAKEWLKANPKSTGARLLQAMVFDAKAVNLRGEGAASTVD SDIWPKYKKLMIQEKEYLLKNKDIADKDVTWYQEMEMVARNLEDKELLYSTLEEASKK YPAYQNIYIEAMVARLPKWGGSPEEVEKIARMAAEKNKDQSGLSYYAYIWSNAIHYQP ELMALLNKRQIVSWDDMLQGWRDRYKQFPSTRTLNNILISSCIARDKDSFVKADKMIQ GETERDTWPQGLNYRECQQSFQ" gene 1992611..1993223 /gene="yebB" /locus_tag="STM1897" /db_xref="GeneID:1253418" regulatory 1992611..1992616 /regulatory_class="ribosome_binding_site" /gene="yebB" /locus_tag="STM1897" /note="putative RBS for yebB; RegulonDB:STMS1H002059" CDS 1992624..1993223 /gene="yebB" /locus_tag="STM1897" /note="similar to E. coli orf, hypothetical protein (AAC74932.1); Blastp hit to AAC74932.1 (233 aa), 80% identity in aa 37 - 228" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460854.1" /db_xref="GI:16765239" /db_xref="GeneID:1253418" /translation="MKKHYSVQYETGDIVFTCIGAALFGQISTASQCWSNHVGIIIGH NGDDYLVAESRVPLSTVTTLSLFIQRSAGQRYAVRRLCGGLTVEQKLAIMEQVPARLN KFYHTGFKYESSRQFCSKFVFDIYKEALCIPVGDIETFEELLHSNPDAKLAFWKFWFL GSIPWDRKTVTPASLWHHPNLELISACGIETPQREAEGE" gene complement(1993225..1993759) /gene="ruvC" /locus_tag="STM1898" /db_xref="GeneID:1253419" CDS complement(1993225..1993746) /gene="ruvC" /locus_tag="STM1898" /EC_number="3.1.22.4" /note="similar to E. coli Holliday junction nuclease; resolution of structures; repair (AAC74933.1); Blastp hit to AAC74933.1 (173 aa), 97% identity in aa 1 - 173" /codon_start=1 /transl_table=11 /product="crossover junction endodeoxyribonuclease RuvC" /protein_id="NP_460855.1" /db_xref="GI:16765240" /db_xref="GeneID:1253419" /translation="MSIILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKVDDLPSR LKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY AARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQM SESRLNLARGRLR" regulatory complement(1993754..1993759) /regulatory_class="ribosome_binding_site" /gene="ruvC" /locus_tag="STM1898" /note="putative RBS for ruvC; RegulonDB:STMS1H002060" gene complement(1993783..1994535) /gene="yebC" /locus_tag="STM1899" /db_xref="GeneID:1253420" CDS complement(1993783..1994523) /gene="yebC" /locus_tag="STM1899" /note="similar to E. coli orf, hypothetical protein (AAC74934.1); Blastp hit to AAC74934.1 (246 aa), 98% identity in aa 1 - 246" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460856.1" /db_xref="GI:16765241" /db_xref="GeneID:1253420" /translation="MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPD ANPRLRAAVDKALANNMTRDTLNRAIARGVGGDEDSNMETIIYEGYGPGGTAIMIECL SDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAE DVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLLR LIDMLEDCDDVQEVYHNGEISDEVAATL" regulatory complement(1994530..1994535) /regulatory_class="ribosome_binding_site" /gene="yebC" /locus_tag="STM1899" /note="putative RBS for yebC; RegulonDB:STMS1H002061" gene complement(1994553..1995013) /gene="ntpA" /locus_tag="STM1900" /db_xref="GeneID:1253421" CDS complement(1994553..1995005) /gene="ntpA" /locus_tag="STM1900" /EC_number="3.6.1.-" /note="similar to E. coli dATP pyrophosphohydrolase (AAC74935.1); Blastp hit to AAC74935.1 (150 aa), 88% identity in aa 1 - 150" /codon_start=1 /transl_table=11 /product="dihydroneopterin triphosphate diphosphatase" /protein_id="NP_460857.1" /db_xref="GI:16765242" /db_xref="GeneID:1253421" /translation="MKDKVYKRPVSVLVVIFAQDTKRVLMLQRRDDPDFWQSVTGSIE EGETALQAAVREVKEEVTIDVAAEQLTLIDCQRTVEFEIFSHLRHRYAPGVMHNTEFW FCLALPHERQVIFTEHLTYQWLDAPDAAALTKSWSNRQAIEEFVINVA" regulatory complement(1995008..1995013) /regulatory_class="ribosome_binding_site" /gene="ntpA" /locus_tag="STM1900" /note="putative RBS for ntpA; RegulonDB:STMS1H002062" gene complement(1995108..1996892) /gene="aspS" /locus_tag="STM1901" /db_xref="GeneID:1253422" CDS complement(1995108..1996880) /gene="aspS" /locus_tag="STM1901" /EC_number="6.1.1.12" /note="similar to E. coli aspartate tRNA synthetase (AAC74936.1); Blastp hit to AAC74936.1 (590 aa), 94% identity in aa 1 - 590" /codon_start=1 /transl_table=11 /product="aspartate--tRNA ligase" /protein_id="NP_460858.1" /db_xref="GI:16765243" /db_xref="GeneID:1253422" /translation="MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI VQVFFDPDRADALKLASELRNEFCIQVTGTVRARDAKNVNADMATGEIEVLASSLTII NRADSLPLDANHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDI ETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRD EDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAE RRYGSDKPDLRNPMELVDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGAQLSRKQI DDYGNFVKIYGAKGLAYIKVNERAKGLDGINSPVAKFLTADIVEAILERTGAQDGDMI FFGADNNKVVADALGALRLKLGKDLSLTDEDKWAPLWVIDFPMFEDDGEGGLTAMHHP FTAPRDMTASELKTAPEGAVANAYDMVINGYEVGGGSVRIHNGEMQQTVFGILGINEQ EQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTE APSFANLAALTELGIQVVKKAENN" regulatory complement(1996887..1996892) /regulatory_class="ribosome_binding_site" /gene="aspS" /locus_tag="STM1901" /note="putative RBS for aspS; RegulonDB:STMS1H002063" gene 1997189..1997771 /gene="yecD" /locus_tag="STM1902" /db_xref="GeneID:1253423" regulatory 1997189..1997194 /regulatory_class="ribosome_binding_site" /gene="yecD" /locus_tag="STM1902" /note="putative RBS for yecD; RegulonDB:STMS1H002064" CDS 1997205..1997771 /gene="yecD" /locus_tag="STM1902" /note="similar to E. coli orf, hypothetical protein (AAC74937.1); Blastp hit to AAC74937.1 (199 aa), 80% identity in aa 12 - 199" /codon_start=1 /transl_table=11 /product="hydrolase" /protein_id="NP_460859.1" /db_xref="GI:16765244" /db_xref="GeneID:1253423" /translation="MLKLNATTTALVVIDLQEGILPFAGGPYTANEVVARAARLAEKC RANGSPVVMVRVGWSDDYAEALKQPVDAATPAHALPENWWTWPTALGKKDSDLEVTKR QWGAFYGTDLELQLRRRGIDTIILCGISTNIGVESTARNAWELGFNLIIAEDACSAAS SEQHQSSMTHIFPRIGRVRSVEDILNAL" gene 1997748..1998586 /gene="yecE" /locus_tag="STM1903" /db_xref="GeneID:1253424" regulatory 1997748..1997753 /regulatory_class="ribosome_binding_site" /gene="yecD" /locus_tag="STM1902" /note="putative RBS for yecE; RegulonDB:STMS1H002065" CDS 1997768..1998586 /gene="yecE" /locus_tag="STM1903" /note="similar to E. coli orf, hypothetical protein (AAC74938.1); Blastp hit to AAC74938.1 (272 aa), 82% identity in aa 1 - 272" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460860.1" /db_xref="GI:16765245" /db_xref="GeneID:1253424" /translation="MIYIGLPQWSHPKWARLGITSLEEYARHFNCVEGNTTLYALPKA EIVDRWYAQTTDDFRFCFKFPATISHQAALRHCDDLVQAFFTRLAPLETRIGQYWLQL PAAFGPRDLPALWQFLDALPATFTYGVEVRHPCFFDKGEDEQRLNRGLHARGVNRVIL DSRPVHAAHPHSEAVRDAQRKKPKVPVHAVVTASHPMVRFIGSDNMAQNREFFAAWLQ KLPQWRQTTTPFLFLHTPDIAQAPELVNTLWHDLRSVLPEIGTAPSIPQQSSLF" gene 1998627..1999034 /gene="yecN" /locus_tag="STM1904" /db_xref="GeneID:1253425" regulatory 1998627..1998632 /regulatory_class="ribosome_binding_site" /gene="yecN" /locus_tag="STM1904" /note="putative RBS for yecN; RegulonDB:STMS1H002066" CDS 1998639..1999034 /gene="yecN" /locus_tag="STM1904" /note="similar to E. coli orf, hypothetical protein (AAC74939.1); Blastp hit to AAC74939.1 (141 aa), 93% identity in aa 11 - 140" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460861.1" /db_xref="GI:16765246" /db_xref="GeneID:1253425" /translation="MVSALYAVLGALLLMKFSFNVVRLRMQYRVAYGDGGFSELQSAI RIHGNAVEYIPVALVLLLFMEMNGAETWMVHICGIILIAGRLMHYYGFHHRLFRWRRA GMSATWCALLLMVLANLWYMPWELVFSLY" gene 1999060..1999818 /gene="yecO" /locus_tag="STM1905" /db_xref="GeneID:1253426" regulatory 1999060..1999065 /regulatory_class="ribosome_binding_site" /gene="yecO" /locus_tag="STM1905" /note="putative RBS for yecO; RegulonDB:STMS1H002067" CDS 1999075..1999818 /gene="yecO" /locus_tag="STM1905" /note="similar to E. coli orf, hypothetical protein (AAC74940.1); Blastp hit to AAC74940.1 (247 aa), 93% identity in aa 1 - 247" /codon_start=1 /transl_table=11 /product="carboxy-S-adenosyl-L-methionine synthase CmoA" /protein_id="NP_460862.1" /db_xref="GI:16765247" /db_xref="GeneID:1253426" /translation="MSHRDTLFSAPIARLGDWTFDERVAEVFPDMIQRSVPGYSNIIS MIGMLAERFVQPNTQVYDLGCSLGAATLSVRRNIRHEHCRIIAVDNSPAMIERCRRHI DAYKAPTPVEVVEGDIRDITIENASMVVLNFTLQFLEPAERQALLDKIYLGLNPGGAL VLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARL RQAGFEHSELWFQCFNFGSLVALKAGVAA" gene 1999802..2000786 /gene="yecP" /locus_tag="STM1906" /db_xref="GeneID:1253427" regulatory 1999802..1999807 /regulatory_class="ribosome_binding_site" /gene="yecO" /locus_tag="STM1905" /note="putative RBS for yecP; RegulonDB:STMS1H002068" CDS 1999815..2000786 /gene="yecP" /locus_tag="STM1906" /note="similar to E. coli putative enzyme (AAC74941.1); Blastp hit to AAC74941.1 (323 aa), 92% identity in aa 1 - 323" /codon_start=1 /transl_table=11 /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB" /protein_id="NP_460863.1" /db_xref="GI:16765248" /db_xref="GeneID:1253427" /translation="MIEFGNFYQLIAKNHLSHWLETLPAQIASWQREQQHGLFKQWSN AVEFLPEMTPWRLDLLHSVTAESETPLSEGQLKRIDTLLRNLMPWRKGPFSLYGVDID TEWRSDWKWDRVLPHLSDLTGRTILDVGCGSGYHLWRMIGAGAHLAVGIDPTQLFLCQ FEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYHRRSPLEHLWQLKDQLVN EGELVLETLVIDGDENTVLVPGDRYAQMRNVYFIPSAPALKKWLEKCGFIDVRIADVC VTTTEEQRRTEWMVTESLADFLDPNDRSKTVEGYPAPQRAVLIARKP" gene complement(2001022..2001779) /gene="cutC" /locus_tag="STM1907" /db_xref="GeneID:1253428" CDS complement(2001022..2001768) /gene="cutC" /locus_tag="STM1907" /note="similar to E. coli copper homeostasis protein (AAC74944.1); Blastp hit to AAC74944.1 (146 aa), 80% identity in aa 1 - 146" /codon_start=1 /transl_table=11 /product="copper homeostasis protein CutC" /protein_id="NP_460864.1" /db_xref="GI:16765249" /db_xref="GeneID:1253428" /translation="MALLEICCYSMECALTAQRNGADRIELCAAPKEGGLTPSFGVLR SVREHITIPVHPIIRPRGGDFYYTDGEFAAMLEDIRLVRELGFPGLVTGVLTVDGDVD MSRMEKIMAAAGPLAVTFHRAFDMCANPFNALKNLADAGVARVLTSGQKADAAQGLSI IMELIAQGDAPTIMAGAGVRANNLQNFLDAGVREVHSSAGVLLPSPMRYRNQGLSMSA DIQADEYSRYRVEGAAVAEMKGIIVRHQAK" regulatory complement(2001774..2001779) /regulatory_class="ribosome_binding_site" /gene="cutC" /locus_tag="STM1907" /note="putative RBS for cutC; RegulonDB:STMS1H002069" gene complement(2001788..2002374) /gene="yecM" /locus_tag="STM1908" /db_xref="GeneID:1253429" CDS complement(2001788..2002357) /gene="yecM" /locus_tag="STM1908" /note="similar to E. coli orf, hypothetical protein (AAC74945.1); Blastp hit to AAC74945.1 (190 aa), 84% identity in aa 3 - 190" /codon_start=1 /transl_table=11 /product="metalloprotein" /protein_id="NP_460865.1" /db_xref="GI:16765250" /db_xref="GeneID:1253429" /translation="MANWQHIDELHDISADLPRFTLAFRELSTRLGLQISALEADHIS LRCHQNTTAERWRRGFEQCGELLSENIINGRPICLFKLHEPVCVEHWRFSVIELPWPG EKRYPHEGWEHIEIVLPGEPETLNARALALLSDEGLSQPGIVVKTSSPQGEHERLPNP TLAVTDGRITVKFHPWSIEAIVASEQAAH" regulatory complement(2002369..2002374) /regulatory_class="ribosome_binding_site" /gene="yecM" /locus_tag="STM1908" /note="putative RBS for yecM; RegulonDB:STMS1H002070" gene 2002583..2004327 /gene="argS" /locus_tag="STM1909" /db_xref="GeneID:1253430" regulatory 2002583..2002588 /regulatory_class="ribosome_binding_site" /gene="argS" /locus_tag="STM1909" /note="putative RBS for argS; RegulonDB:STMS1H002071" CDS 2002594..2004327 /gene="argS" /locus_tag="STM1909" /EC_number="6.1.1.19" /note="arginyl-tRNA synthetase. (SW:SYR_SALTY)" /codon_start=1 /transl_table=11 /product="arginine--tRNA ligase" /protein_id="NP_460866.1" /db_xref="GI:16765251" /db_xref="GeneID:1253430" /translation="MNIQALLSEKVSQAMIAAGAPADCEPQVRQSAKVQFGDYQANGM MAVAKKLGMAPRQLAEQVLTHLDLSGIASKVEIAGPGFINIFLEPAFLAEQVQQALAS DRLGVSQPTRQTIVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHHVIRANHVG DWGTQFGMLIAWLEKQQQENAGDMALADLEGFYRDAKKHYDEDEAFAERARNYVVKLQ SGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKG LAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTDIACAKYRYETLHADRVL YYIDSRQHQHLMQAWTIVRKAGYVPDSVPLEHHMFGMMLGKDGKPFKTRAGGTVKLAD LLDEALERARRLVAEKNPDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNML AFEGNTAPYMQYAYTRVLSVFRKANIDEQALASAPVIISEDREAQLAARLLQFEETLT VVAREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDAVRNSRLKLAQLTAKTLKLGL DTLGIETVERM" gene 2004509..2006387 /locus_tag="STM1910" /db_xref="GeneID:1253431" regulatory 2004509..2004514 /regulatory_class="ribosome_binding_site" /locus_tag="STM1910" /note="putative RBS for STM1910; RegulonDB:STMS1H002073" CDS 2004516..2006387 /locus_tag="STM1910" /note="penicillin-binding protein 2 (PBP-2). (SW:PBP2_SALTY)" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 2" /protein_id="NP_460867.1" /db_xref="GI:16765252" /db_xref="GeneID:1253431" /translation="MTFKDFDAEEKLFLRRVIVAFGVVVVCFGILIFNLYNLQIRQHH YYTTRSNENDIKMLPVAPTRGIIYDRNGIPLVRNVTWYDIAVTPYKIADMDALLKQLT PIVDLSPDDISDFRRALKSSSRYRPVVLKNALTDVEIARFAVNQFHFNGVTINSYQDR QYPYGAELAHVLGYVSKINDNDLKALDKKGLAENYAADHNIGKQGIERYYENDLHGKT GYQEVEVDNHGRIVRLLKDVPPIAGKNIHLTLDLHLQEYIESLLAGQRAAVLVEDPHD GSVLAMVSMPSYDPNPFVKGISYQDYGKLLHDKNLPLINRVTQGLYPPASTVKPYMAM SALLCGIITPQTTFFGAPTWTLPGTQRHYRDWKKTGHGMLDVTKAIEESADTFFYQVA YMMGIDRIDTMLSQFGYGKPTGIDLNEEYDGLLPSRAWKQRVHKKAWYQGDTISVGIG QGYWIATPIQMVKAMVALINNGKVIAPHLLLNEESGKTVVPYRPSGTPAQIADPASPY WGLVRQAMYGMANAPNGTGYKFFHTAPYGIAAKSGTSQVFSLKENQTYNAKMIPIRLR DHVFYTAFAPYKNPKVAIALILENGGSDGVTAAPIMRKILDHLFDPQADTTQPDQAP" gene complement(2006441..2007586) /locus_tag="STM1911" /db_xref="GeneID:1253432" CDS complement(2006441..2007580) /locus_tag="STM1911" /codon_start=1 /transl_table=11 /product="glycoside hydrolase 105 family protein" /protein_id="NP_460868.1" /db_xref="GI:16765253" /db_xref="GeneID:1253432" /translation="MMVYPVKHSPLLRQPEHFIARDELKALVQKVTHNLVNIKDETGE FLLRLDDGRVIDTKGWAGWEWTHGVGLYGMYHYYQQTGDQTMRKIIDDWFADRFAEGA TTKNVNTMAPFLTLAYRYEETRNPAYLPWLETWAEWAMNEMPRTDHGGMQHITLAEEN HQQMWDDTLMMTVLPLAKIGKLLNRPEYVEEATYQFLLHVQNLMDKETGLWFHGWSYD GHHNFANARWARGNSWLTIVIPDFLELLDLPENNAVRRYLVQVLNAQIAALAKCQDES GLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVERHYAQVAEKAIRGIVKHISPEG ELLQTSFGTGMGHDLDFYRHIPLTSMPYGQAMAMLCLTEYLRNYF" regulatory complement(2007581..2007586) /regulatory_class="ribosome_binding_site" /locus_tag="STM1911" /note="putative RBS for STM1911; RegulonDB:STMS1H002074" gene complement(2007817..2008219) /gene="flhE" /locus_tag="STM1912" /db_xref="GeneID:1253433" CDS complement(2007817..2008209) /gene="flhE" /locus_tag="STM1912" /note="flagellar protein FLHE precursor. (SW:FLHE_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar protein FlhE" /protein_id="NP_460869.1" /db_xref="GI:16765254" /db_xref="GeneID:1253433" /translation="MRKWLALLLFPLTVQAAGEGAWQDSGMGVTLNYRGVSASSSPLS ARQPVSGVMTLVAWRYELNGPTPAGLRVRLCSQSRCVELDGQSGTTHGFAHVPAVEPL RFVWEVPGGGRLIPALKVRSNQVIVNYR" gene complement(2008209..2010300) /gene="flhA" /locus_tag="STM1913" /db_xref="GeneID:1253434" CDS complement(2008209..2010287) /gene="flhA" /locus_tag="STM1913" /note="possible export of flagellar proteins; flagellar biosynthesis protein FLHA. (SW:FLHA_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein FlhA" /protein_id="NP_460870.1" /db_xref="GI:16765255" /db_xref="GeneID:1253434" /translation="MANLVAMLRLPSNLKSTQWQILAGPILILLILSMMVLPLPAFIL DLLFTFNIALSIMVLLVAMFTQRTLDFAAFPTILLFTTLLRLALNVASTRIILMEGHT GAAAAGKVVEAFGHFLVGGNFAIGIVVFIILVIINFMVITKGAGRIAEVGARFVLDGM PGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVI NVVGGLLVGVLQHGMSIGSAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQD VGEQMVGQLFSNPRVMLLAAAVLGLLGMVPGMPNLVFLLFTAALLGLAWWLRGREEKA PEEPQPVKMPENNSVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRK KFAQDMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLP GEKTVDPAFGLDAIWIESALKEQAQIQGFTVVEASTVVATHLNHLIGQFSAELFGRQE AQQLLDRVSQEMPKLTEDLVPGVVTLTTLHKVLQNLLAEKVPIRDMRTILETLAEHAP LQSDPHELTAVVRVALGRAITQQWFPGNEEVQVIGLDTALERLLLQALQGGGGLEPGL ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRH IRMTATIGGK" regulatory complement(2008214..2008219) /regulatory_class="ribosome_binding_site" /gene="flhE" /locus_tag="STM1912" /note="putative RBS for flhE; RegulonDB:STMS1H002075" gene complement(2010280..2011444) /gene="flhB" /locus_tag="STM1914" /db_xref="GeneID:1253435" CDS complement(2010280..2011431) /gene="flhB" /locus_tag="STM1914" /note="flagellar biosynthetic protein FLHB. (SW:FLHB_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein FlhB" /protein_id="NP_460871.1" /db_xref="GI:16765256" /db_xref="GeneID:1253435" /translation="MAEESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVC IIWFGGESLARQLAGMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVL VALISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVT GFYLWHHWPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLK KLRMSRQDIRDEFKESEGDPHVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVA LQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPG QLYAAVAEVLAWVWQLKRWRLAGGQRPPQPENLPVPEALDFMNEKNTDG" regulatory complement(2010295..2010300) /regulatory_class="ribosome_binding_site" /gene="flhB" /locus_tag="STM1914" /note="putative RBS for flhA; RegulonDB:STMS1H002076" regulatory complement(2011439..2011444) /regulatory_class="ribosome_binding_site" /gene="flhB" /locus_tag="STM1914" /note="putative RBS for flhB; RegulonDB:STMS1H002077" gene complement(2011625..2012281) /gene="cheZ" /locus_tag="STM1915" /db_xref="GeneID:1253436" CDS complement(2011625..2012269) /gene="cheZ" /locus_tag="STM1915" /note="CheY protein phophatase; chemotaxis protein CHEZ. (SW:CHEZ_SALTY)" /codon_start=1 /transl_table=11 /product="protein phosphatase CheZ" /protein_id="NP_460872.1" /db_xref="GI:16765257" /db_xref="GeneID:1253436" /translation="MMQPSIKPADEGSAGDIIARIGSLTRMLRDSLRELGLDQAIAEA AEAIPDARDRLDYVVQMTAQAAERALNSVEASQPHQDAMEKEAKALTQRWDEWFDNPI ELSDARELVTDTRQFLRDVPGHTSFTNAQLLDIMMAQDFQDLTGQVIKRMMDVIQEIE RQLLMVLLENIPEQSARPKRENESLLNGPQVDTSKAGVVASQDQVDDLLDSLGF" regulatory complement(2012276..2012281) /regulatory_class="ribosome_binding_site" /gene="cheZ" /locus_tag="STM1915" /note="putative RBS for cheZ; RegulonDB:STMS1H002078" gene complement(2012280..2012684) /gene="cheY" /locus_tag="STM1916" /db_xref="GeneID:1253437" CDS complement(2012280..2012669) /gene="cheY" /locus_tag="STM1916" /note="transmits chemoreceptor signals to flagelllar motor components; chemotaxis protein CHEY. (SW:CHEY_SALTY)" /codon_start=1 /transl_table=11 /product="two-component system response regulator" /protein_id="NP_460873.1" /db_xref="GI:16765258" /db_xref="GeneID:1253437" /translation="MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALN KLQAGGFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAG ASGYVVKPFTAATLEEKLNKIFEKLGM" regulatory complement(2012679..2012684) /regulatory_class="ribosome_binding_site" /gene="cheY" /locus_tag="STM1916" /note="putative RBS for cheY; RegulonDB:STMS1H002079" gene complement(2012687..2013747) /gene="cheB" /locus_tag="STM1917" /db_xref="GeneID:1253438" CDS complement(2012687..2013736) /gene="cheB" /locus_tag="STM1917" /EC_number="3.1.1.61" /note="response regulator for chemotaxis (cheA sensor); protein-glutamate methylesterase. (SW:CHEB_SALTY)" /codon_start=1 /transl_table=11 /product="chemotaxis response regulator protein-glutamate methylesterase" /protein_id="NP_460874.1" /db_xref="GI:16765259" /db_xref="GeneID:1253438" /translation="MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDL IKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAI DFVTKPQLGIREGMLAYSEMIAEKVRTAARARIAAHKPMAAPTTLKAGPLLSSEKLIA IGASTGGTEAIRHVLQPLPLSSPAVIITQHMPPGFTRSFAERLNKLCQISVKEAEDGE RVLPGHAYIAPGDKHMELARSGANYQIKIHDGPPVNRHRPSVDVLFHSVAKHAGRNAV GVILTGMGNDGAAGMLAMYQAGAWTIAQNEASCVVFGMPREAINMGGVSEVVDLSQVS QQMLAKISAGQAIRI" gene complement(2013733..2014607) /gene="cheR" /locus_tag="STM1918" /db_xref="GeneID:1253439" CDS complement(2013733..2014599) /gene="cheR" /locus_tag="STM1918" /EC_number="2.1.1.80" /note="response regulator for chemotaxis; chemotaxis protein methyltransferase. (SW:CHER_SALTY)" /codon_start=1 /transl_table=11 /product="chemotaxis protein-glutamate O-methyltransferase" /protein_id="NP_460875.1" /db_xref="GI:16765260" /db_xref="GeneID:1253439" /translation="MTSSLPSGQTSVLLQMTQRLALSDAHFRRICQLIYQRAGIVLAD HKRDMVYNRLVRRLRALGLDDFGRYLSMLEANQNSAEWQAFINALTTNLTAFFREAHH FPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVL EKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQY NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSENFSNLVREFSLR GQTVYALSKDKA" regulatory complement(2013742..2013747) /regulatory_class="ribosome_binding_site" /gene="cheR" /locus_tag="STM1918" /note="putative RBS for cheB; RegulonDB:STMS1H002080" regulatory complement(2014602..2014607) /regulatory_class="ribosome_binding_site" /gene="cheR" /locus_tag="STM1918" /note="putative RBS for cheR; RegulonDB:STMS1H002081" gene complement(2014753..2016428) /gene="cheM" /locus_tag="STM1919" /db_xref="GeneID:1253440" CDS complement(2014753..2016414) /gene="cheM" /locus_tag="STM1919" /note="aspartate sensor-receptor; methyl-accepting chemotaxis protein II (MCP-II). (SW:MCP2_SALTY)" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein II" /protein_id="NP_460876.1" /db_xref="GI:16765261" /db_xref="GeneID:1253440" /translation="MFNRIRVVTMLMMVLGVFALLQLVSGGLLFSSLQHNQQGFVISN ELRQQQSELTSTWDLMLQTRINLSRSAARMMMDASNQQSSAKTDLLQNAKTTLAQAAA HYANFKNMTPLPAMAEASANVDEKYQRYQAALAELIQFLDNGNMDAYFAQPTQGMQNA LGEALGNYARVSENLYRQTFDQSAHDYRFAQWQLGVLAVVLVLILMVVWFGIRHALLN PLARVITHIREIASGDLTKTLTVSGRNEIGELAGTVEHMQRSLIDTVTQVREGSDAIY SGTSEIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSASET ARHGGKVVDGVVNTMHEIADSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGR GFAVVAGEVRNLASRSAQAAKEIKALIEDSVSRVDTGSVLVESAGETMTDIVNAVTRV TDIMGEIASASDEQSRGIDQVALAVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQ AVSAFRLASRPLAVNKPEMRLSVNAQSGNTPQSLAARDDANWETF" regulatory complement(2016423..2016428) /regulatory_class="ribosome_binding_site" /gene="cheM" /locus_tag="STM1919" /note="putative RBS for cheM; RegulonDB:STMS1H002082" gene complement(2016651..2017165) /gene="cheW" /locus_tag="STM1920" /db_xref="GeneID:1253441" CDS complement(2016651..2017154) /gene="cheW" /locus_tag="STM1920" /note="regulation; chemotaxis protein CHEW. (SW:CHEW_SALTY)" /codon_start=1 /transl_table=11 /product="chemotaxis protein CheW" /protein_id="NP_460877.1" /db_xref="GI:16765262" /db_xref="GeneID:1253441" /translation="MTGMSNVSKLAGEPSGQEFLVFTLGNEEYGIDILKVQEIRGYDQ VTRIANTPAFIKGVTNLRGVIVPIVDLRVKFCEGDVEYDDNTVVIVLNLGQRVVGIVV DGVSDVLSLTAEQIRPAPEFAVTLSTEYLTGLGALGERMLILVNIEKLLNSEEMALLD IAASHVA" regulatory complement(2017160..2017165) /regulatory_class="ribosome_binding_site" /gene="cheW" /locus_tag="STM1920" /note="putative RBS for cheW; RegulonDB:STMS1H002083" gene complement(2017175..2019201) /gene="cheA" /locus_tag="STM1921" /db_xref="GeneID:1253442" CDS complement(2017175..2019190) /gene="cheA" /locus_tag="STM1921" /EC_number="2.7.3.-" /note="transduces signal between chemo- signal receptors and CheB and CheY; chemotaxis protein CHEA. (SW:CHEA_SALTY)" /codon_start=1 /transl_table=11 /product="sensory histitine protein kinase" /protein_id="NP_460878.1" /db_xref="GI:16765263" /db_xref="GeneID:1253442" /translation="MSMDISDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIF RAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQL DAYKNSEEPDAASFEYICNALRQLALEAKGETTPAVVETAALSAAIQEESVAETESPR DESKLRIVLSRLKANEVDLLEEELGNLATLTDVVKGADSLSATLDGSVAEDDIVAVLC FVIEADQIAFEKVVAAPVEKAQEKTEVAPVAPPAVVAPAAKSAAHEHHAGREKPARER ESTSIRVAVEKVDQLINLVGELVITQSMLAQRSNELDPVNHGDLITSMGQLQRNARDL QESVMSIRMMPMEYVFSRFPRLVRDLAGKLGKQVELTLVGSSTELDKSLIERIIDPLT HLVRNSLDHGIEMPEKRLEAGKNVVGNLILSAEHQGGNICIEVTDDGAGLNRERILAK AMSQGMAVNENMTDDEVGMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEI QSKQGSGTTIRILLPLTLAILDGMSVRVAGEVFILPLNAVMESLQPREEDLHPLAGGE RVLEVRGEYLPLVELWKVFDVDGAKTEATQGIVVILQSAGRRYALLVDQLIGQHQVVV KNLESNYRKVPGISAATILGDGSVALIVDVSALQGLNREQRMAITAA" gene complement(2019195..2020132) /gene="motB" /locus_tag="STM1922" /db_xref="GeneID:1253443" CDS complement(2019195..2020124) /gene="motB" /locus_tag="STM1922" /note="linking torque machinery to cell wall; chemotaxisMOTB protein. (SW:MOTB_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar motor protein MotB" /protein_id="NP_460879.1" /db_xref="GI:16765264" /db_xref="GeneID:1253443" /translation="MKNQAHPIVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLV MWLISISSPKELIQIAEYFRTPLATAVTGGNRIANSESPIPGGGDDYTQQQGEVEKQP NIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRP MFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSNWELSADR ANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQAEQAILH ENAESQNEPVSVLQQPAAAPPASVPTSPKAEPR" regulatory complement(2019196..2019201) /regulatory_class="ribosome_binding_site" /gene="motB" /locus_tag="STM1922" /note="putative RBS for cheA; RegulonDB:STMS1H002084" gene complement(2020121..2021020) /gene="motA" /locus_tag="STM1923" /db_xref="GeneID:1253444" CDS complement(2020121..2021008) /gene="motA" /locus_tag="STM1923" /note="torque generator; chemotaxis MOTA protein). (SW:MOTA_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar motor stator protein MotA" /protein_id="NP_460880.1" /db_xref="GI:16765265" /db_xref="GeneID:1253444" /translation="MLILLGYLVVIGTVFGGYVMTGGHLGALYQPAELVIIGGAGIGA FIVGNNGKAIKGTMKAIPLLFRRSKYTKSMYMDLLALLYRLMAKSRQQGMFSLERDIE NPKESEIFASYPRILADAVMLDFIVDYLRLIISGNMNTFEIEALMDEEIETHESEAEV PANSLAMVGDSLPAFGIVAAVMGVVHALASADRPAAELGALIAHAMVGTFLGILLAYG FISPLATVLRQKSAETTKMMQCVKITLLSNLNGYAPPIAVEFGRKTLYSSERPSFIEL EEHVRAVRNPNQQQTTEEA" regulatory complement(2020127..2020132) /regulatory_class="ribosome_binding_site" /gene="motA" /locus_tag="STM1923" /note="putative RBS for motB; RegulonDB:STMS1H002085" regulatory complement(2021015..2021020) /regulatory_class="ribosome_binding_site" /gene="motA" /locus_tag="STM1923" /note="putative RBS for motA; RegulonDB:STMS1H002086" gene complement(2021133..2021723) /gene="flhC" /locus_tag="STM1924" /db_xref="GeneID:1253445" CDS complement(2021133..2021717) /gene="flhC" /locus_tag="STM1924" /note="acts on class 2 operons; flagellar transcriptional activator FLHC. (SW:FLHC_SALTY)" /codon_start=1 /transl_table=11 /product="regulator of flagellar biosynthesis" /protein_id="NP_460881.3" /db_xref="GI:1109557662" /db_xref="GeneID:1253445" /translation="MIMSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIR LYKELRGSPPPKGMLPFSTDWFMTWEQNIHASMFCNAWQFLLKTGLCSGVDAVIKAYR LYLEQCPQPPEGPLLALTRAWTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACS LCQPPSRAVKRRKLSRDAADIIPQLLDEQIEQAV" gene complement(2021714..2022215) /gene="flhD" /locus_tag="STM1925" /db_xref="GeneID:1253446" CDS complement(2021714..2022064) /gene="flhD" /locus_tag="STM1925" /note="acts on class 2 operons; flagellar transcriptional activator FLHD. (SW:FLHD_SALTY)" /codon_start=1 /transl_table=11 /product="regulator of flagellar biosynthesis" /protein_id="NP_460882.1" /db_xref="GI:16765267" /db_xref="GeneID:1253446" /translation="MGTMHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEE MANTLGALTLPQMVKLAETNQLVCHFRFDDHQTITRLTQDSRVDDLQQIHTGIMLSTR LLNEVDDTARKKRA" regulatory complement(2021718..2021723) /regulatory_class="ribosome_binding_site" /gene="flhD" /locus_tag="STM1925" /note="putative RBS for flhC; RegulonDB:STMS1H002087" regulatory complement(2022072..2022077) /regulatory_class="ribosome_binding_site" /gene="flhD" /locus_tag="STM1925" /note="putative RBS for flhD; RegulonDB:STMS1H002088" regulatory complement(2022188..2022196) /regulatory_class="minus_10_signal" /gene="flhD" /locus_tag="STM1925" /note="putative -10_signal for flhD; RegulonDB:STMLTH004518" regulatory complement(2022207..2022215) /regulatory_class="minus_35_signal" /gene="flhD" /locus_tag="STM1925" /note="putative -35_signal for flhD; RegulonDB:STMLTH004518" protein_bind complement(2022269..2022279) /note="putative binding site for OmpR, RegulonDB: STMS1H000328" /bound_moiety="OmpR" protein_bind complement(2022325..2022335) /note="putative binding site for OmpR, RegulonDB: STMS1H000324" /bound_moiety="OmpR" gene 2022735..2022854 /locus_tag="STM1926" /db_xref="GeneID:1253447" regulatory 2022735..2022740 /regulatory_class="ribosome_binding_site" /locus_tag="STM1926" /note="putative RBS for STM1926; RegulonDB:STMS1H002089" CDS 2022738..2022854 /locus_tag="STM1926" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_448342.1" /db_xref="GI:1109557663" /db_xref="GeneID:1253447" /translation="MINYDVLHINVALAHCRNAINRVKLKHNLIFLQSRSEL" gene 2022839..2023279 /gene="yecG" /locus_tag="STM1927" /db_xref="GeneID:1253448" regulatory 2022839..2022844 /regulatory_class="ribosome_binding_site" /locus_tag="STM1926" /note="putative RBS for yecG; RegulonDB:STMS1H002090" CDS 2022851..2023279 /gene="yecG" /locus_tag="STM1927" /note="hypothetical 17.1 Kda protein in flhD-otsA intergenic region. (SW:YECG_SALTY)" /codon_start=1 /transl_table=11 /product="universal stress protein UspC" /protein_id="NP_460884.1" /db_xref="GI:16765269" /db_xref="GeneID:1253448" /translation="MSYTHILVAVAVTPESHQLLAKAVSIARPVQAKVSLITLASDPE LYNQFAAPMMEDLRAVMHEETENFLKMLGEKADYPIEQTFIASGELSQHILAVCRKHH VDLVICGNHNHSFFSRASCSAKSVVSASQVDVLLVPLAGD" gene complement(2023297..2024874) /gene="otsA" /locus_tag="STM1928" /db_xref="GeneID:1253449" CDS complement(2023297..2024718) /gene="otsA" /locus_tag="STM1928" /EC_number="2.4.1.15" /note="similar to E. coli trehalose-6-phosphate synthase (AAC74966.1); Blastp hit to AAC74966.1 (474 aa), 88% identity in aa 1 - 474" /codon_start=1 /transl_table=11 /product="alpha,alpha-trehalose-phosphate synthase" /protein_id="NP_460885.1" /db_xref="GI:16765270" /db_xref="GeneID:1253449" /translation="MSRLVVVSNRIAPPDNKGGAGGLAVGVLGALKAAGGLWFGWSGE TGNEDEPLKKVTKGNITWASFNLSEQDYEDYYCQFSNAVLWPAFHYRLDLVQFQRPAW EGYMRVNALLADKLLPLIKENDIIWVHDYHLLPFASELRKRGVNNRIGFFLHIPFPTP EIFNALPPHDELLEQLCDFDLLGFQTENDRLAFLDSLSSQTRVTTRSGKQHIAWGKDF QTEVYPIGIEPDEIALQAAGPLPPKLAQLKAELKNVKNIFSVERLDYSKGLPERFLAY EALLENYPQHRGKIRYTQIAPTSRGEVQAYQDIRHQLETEAGRINGKYGQLGWTPLYY LNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEFVAAQDPANPGVLVLSQFAGAAN ELTSALIVNPYDRDDVAAALNRALTMPLAERISRHAEMLDVIVKNDINRWQERFIHDL KEVTPRSPERQQQNNVATFPKLA" gene complement(2024693..2025552) /gene="otsB" /locus_tag="STM1929" /db_xref="GeneID:1253450" CDS complement(2024693..2025496) /gene="otsB" /locus_tag="STM1929" /EC_number="3.1.3.12" /note="similar to E. coli trehalose-6-phosphate phophatase, biosynthetic (AAC74967.1); Blastp hit to AAC74967.1 (266 aa), 72% identity in aa 1 - 266" /codon_start=1 /transl_table=11 /product="trehalose-phosphatase" /protein_id="NP_460886.1" /db_xref="GI:16765271" /db_xref="GeneID:1253450" /translation="MAEPLTVSPELTANYAYFFDLDGTLAEIKPHPDQVVVPHKILQL LDRLAAHNAGALALISGRSMTELDALAKPFRFPLAGVHGAERRDINGKTHIVRLPEAV VREVEALLRSTLVALPGTELESKGMAFALHYRQAPEHEAALLALAQHVTQHWPQLALQ PGKCVVEIKPKGTNKGEAIAAFMQEAPFAGRIPVFVGDDLTDEAGFGVVNHAGGISVK VGVGATQAAWRLESVPDVWRWLEQINYPQQEQQVMNNRRDGYESFSRSI" regulatory complement(2024727..2024732) /regulatory_class="ribosome_binding_site" /gene="otsB" /locus_tag="STM1929" /note="putative RBS for otsA; RegulonDB:STMS1H002091" regulatory complement(2024848..2024856) /regulatory_class="minus_10_signal" /gene="otsB" /locus_tag="STM1929" /note="putative -10_signal for otsA; RegulonDB:STMLTH004519" regulatory complement(2024866..2024874) /regulatory_class="minus_35_signal" /gene="otsB" /locus_tag="STM1929" /note="putative -35_signal for otsA; RegulonDB:STMLTH004519" regulatory complement(2025503..2025508) /regulatory_class="ribosome_binding_site" /gene="otsB" /locus_tag="STM1929" /note="putative RBS for otsB; RegulonDB:STMS1H002092" regulatory complement(2025525..2025533) /regulatory_class="minus_10_signal" /gene="otsB" /locus_tag="STM1929" /note="putative -10_signal for otsB; RegulonDB:STMLTH004520" regulatory complement(2025544..2025552) /regulatory_class="minus_35_signal" /gene="otsB" /locus_tag="STM1929" /note="putative -35_signal for otsB; RegulonDB:STMLTH004520" gene complement(2025659..2025900) /locus_tag="STM1930" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1253451" gene complement(2026129..2026693) /gene="araH" /locus_tag="STM1931" /db_xref="GeneID:1253452" CDS complement(2026129..2026686) /gene="araH" /locus_tag="STM1931" /note="similar to E. coli 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis (AAC73527.1); Blastp hit to AAC73527.1 (198 aa), 30% identity in aa 9 - 183" /codon_start=1 /transl_table=11 /product="DJ-1 family protein" /protein_id="NP_460887.1" /db_xref="GI:16765272" /db_xref="GeneID:1253452" /translation="MKKVAVLLAPGFEEAEAIVTLDILRRLHIDVETLACAESRAVVS YHDIPMVADSTLSERQQALFDAVVLPGGPQGSANLAANPAVIAFVARHDAAGKLICPI CSAAARVLGAHGLLKGRRYVCSGDLWKAVPEGVYVDAPVVEDGNLISGKGLGHVFDFA LTLSARLLGDDAPVREQAEHIYYPW" regulatory complement(2026688..2026693) /regulatory_class="ribosome_binding_site" /gene="araH" /locus_tag="STM1931" /note="putative RBS for araH; RegulonDB:STMS1H002094" gene 2027217..2027740 /gene="ftnB" /locus_tag="STM1932" /db_xref="GeneID:1253453" regulatory 2027217..2027222 /regulatory_class="ribosome_binding_site" /gene="ftnB" /locus_tag="STM1932" /note="putative RBS for ftnB; RegulonDB:STMS1H002095" CDS 2027237..2027740 /gene="ftnB" /locus_tag="STM1932" /note="similar to E. coli ferritin-like protein (AAC74972.1); Blastp hit to AAC74972.1 (167 aa), 76% identity in aa 1 - 167" /codon_start=1 /transl_table=11 /product="ferritin" /protein_id="NP_460888.1" /db_xref="GI:16765273" /db_xref="GeneID:1253453" /translation="MAAVGMVQKLNTPMNLEFYASNLYLHLSEWCSEHSLTGTATFLR TQAQGNVTQMMRMFNFMKNAGATPIVKAIDVPGEELCSLEELFQKTLEDYQQRASTLS RLADEAKALNDASTLDFLHTLEKEQQQDGVLLQTILEEVRSAKRAGLCLAQTDQHLLN VVTYQHH" gene complement(2027919..2028565) /locus_tag="STM1933" /db_xref="GeneID:1253454" CDS complement(2027919..2028557) /locus_tag="STM1933" /EC_number="5.3.1.6" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460889.1" /db_xref="GI:16765274" /db_xref="GeneID:1253454" /translation="MKIALMMENSQASKNAIIYNELSAVANEKGFPVFNVGMCDENDH HLTYIHLGIMASILLNANAVDFVVTGCGTGQGALMSLNIHPGVICGYCIDPADAFLFA QINNGNALSLPFAKGFGWGAELNVRFIFEKAFTGRKGEGYPPERKAPQVRNAGILNQV KAAVVKENYLDTLRAIDPELVKTAVSGPRFQQCLFENGQNKEIEAFVREMLG" regulatory complement(2028560..2028565) /regulatory_class="ribosome_binding_site" /locus_tag="STM1933" /note="putative RBS for STM1933; RegulonDB:STMS1H002096" gene 2028800..2029148 /locus_tag="STM1934" /db_xref="GeneID:1253455" regulatory 2028800..2028805 /regulatory_class="ribosome_binding_site" /locus_tag="STM1934" /note="putative RBS for STM1934; RegulonDB:STMS1H002097" CDS 2028813..2029148 /locus_tag="STM1934" /note="similar to E. coli orf, hypothetical protein (AAC74974.1); Blastp hit to AAC74974.1 (107 aa), 61% identity in aa 1 - 104" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460890.1" /db_xref="GI:16765275" /db_xref="GeneID:1253455" /translation="MKPLIFTLSLLALTGCTITRQAQVSEASPISGIVRLTYNQPLFF TSRTDDYVSHGTATRECQQMGYADAVSFGQPVGTCSIYAGSLCLNTRFTLSWQCRGVA VPQIMPLYY" gene 2029375..2029885 /gene="ftn" /locus_tag="STM1935" /db_xref="GeneID:1253456" regulatory 2029375..2029380 /regulatory_class="ribosome_binding_site" /gene="ftn" /locus_tag="STM1935" /note="putative RBS for ftn; RegulonDB:STMS1H002098" CDS 2029388..2029885 /gene="ftn" /locus_tag="STM1935" /note="similar to E. coli cytoplasmic ferritin (an iron storage protein) (AAC74975.1); Blastp hit to AAC74975.1 (165 aa), 92% identity in aa 1 - 165" /codon_start=1 /transl_table=11 /product="ferritin" /protein_id="NP_460891.1" /db_xref="GI:16765276" /db_xref="GeneID:1253456" /translation="MLKTEMIDKLNEQMNLELYSSLLYQQMSAWCSYHSFEGAAAFLR RHAQEEMTHMQRLFDYLTDTGSLPRIHTVSSPFAEYASLDELFRATYEHEQLITQKIN ELAHAAMTSQDYPTFNFLQWYVAEQHEEEKLFKSIIDKLTLAGKSGEGLYFIDKELST LDTQN" gene complement(2029931..2030181) /gene="yecH" /locus_tag="STM1936" /db_xref="GeneID:1253457" CDS complement(2029931..2030170) /gene="yecH" /locus_tag="STM1936" /note="similar to E. coli orf, hypothetical protein (AAC74976.1); Blastp hit to AAC74976.1 (79 aa), 87% identity in aa 1 - 79" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460892.1" /db_xref="GI:16765277" /db_xref="GeneID:1253457" /translation="MDSIHGHEVLNMMIESGEQYTHTSLEAAIKARFGERARFHTCSA SDMTAAELVAFLAAKGKFIAVEDGFSTHESKICRH" regulatory complement(2030176..2030181) /regulatory_class="ribosome_binding_site" /gene="yecH" /locus_tag="STM1936" /note="putative RBS for yecH; RegulonDB:STMS1H002099" gene 2030271..2031608 /gene="tyrP" /locus_tag="STM1937" /db_xref="GeneID:1253458" regulatory 2030271..2030279 /regulatory_class="minus_35_signal" /gene="tyrP" /locus_tag="STM1937" /note="putative -35_signal for tyrP; RegulonDB:STMLTH004521" protein_bind 2030289..2030305 /gene="tyrP" /locus_tag="STM1937" /note="putative binding site for TyrR, RegulonDB: STMS1H000390" /bound_moiety="TyrR" regulatory 2030295..2030303 /regulatory_class="minus_10_signal" /gene="tyrP" /locus_tag="STM1937" /note="putative -10_signal for tyrP; RegulonDB:STMLTH004521" protein_bind 2030309..2030333 /gene="tyrP" /locus_tag="STM1937" /note="putative binding site for TyrR, RegulonDB: STMS1H000387" /bound_moiety="TyrR" regulatory 2030380..2030385 /regulatory_class="ribosome_binding_site" /gene="tyrP" /locus_tag="STM1937" /note="putative RBS for tyrP; RegulonDB:STMS1H002100" CDS 2030397..2031608 /gene="tyrP" /locus_tag="STM1937" /note="similar to E. coli tyrosine-specific transport system (AAC74977.1); Blastp hit to AAC74977.1 (403 aa), 88% identity in aa 1 - 403" /codon_start=1 /transl_table=11 /product="tyrosine transporter TyrP" /protein_id="NP_460893.1" /db_xref="GI:16765278" /db_xref="GeneID:1253458" /translation="MKNRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLGLLIGLW ALMCYTALLLLEVYQHVPADTGLGSLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGA GELLASSINNWLGATLSPAAGVLLFTFVAGGVVCVGTSLVDLFNRFLFSAKIIFLVIM LALLTPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMNGNIRRLRWVF MTGSAIPLVAYIFWQLATLGSIDSPTFRGLLASHAGLNGLLQALREVVASPHVELAVH LFADLALATSFLGVALGLFDYLADLFQRRSTVSGRLQTGLITFLPPLAFALFYPRGFV MALGYAGVALAVLALLIPAMLVWQCRKQSPQAGYRVAGGTPALALVFICGIVVIGVQF SIALGFLPDPG" gene complement(2031683..2032361) /gene="yecA" /locus_tag="STM1938" /db_xref="GeneID:1253459" CDS complement(2031683..2032348) /gene="yecA" /locus_tag="STM1938" /note="similar to the C-terminal domain of SecA; similar to E. coli orf, hypothetical protein (AAC74978.1); Blastp hit to AAC74978.1 (221 aa), 81% identity in aa 1 - 221" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460894.1" /db_xref="GI:16765279" /db_xref="GeneID:1253459" /translation="MKMEPLNENELEWLDDVLTKYNTDQAILDVAELDGLITAVLSSP RPIDPEQWLVAIWGGPAYVPRWTSEKEMTRFMDLVFQHMADTAARLEDYPEQFEPLFG LREVDGHELTIVEEWCFGYMRGVSLSDWSDLPDTLKPALEAIALHGTEENFALLDKMS PEAFDKSVDAIRIAALELHAWWMAHPHTTPLQMPIKAEVKVGRNDPCPCGSGKKFKQC CLH" regulatory complement(2032356..2032361) /regulatory_class="ribosome_binding_site" /gene="yecA" /locus_tag="STM1938" /note="putative RBS for yecA; RegulonDB:STMS1H002101" gene complement(2032586..2032919) /locus_tag="STM1939" /db_xref="GeneID:1253460" CDS complement(2032586..2032912) /locus_tag="STM1939" /codon_start=1 /transl_table=11 /product="putative glucose-6-phosphate dehydrogenase" /protein_id="NP_460895.1" /db_xref="GI:16765280" /db_xref="GeneID:1253460" /translation="MVKRRNLLHFNNGARSERDLGDLVTKVFEKAAKKEPQPLYTFSL PLLSVQDEIRVYCKKKNIKIGYDTLFMEITFSADREAVDELIKHFFTENKLYLRGRFY LSAAVV" regulatory complement(2032914..2032919) /regulatory_class="ribosome_binding_site" /locus_tag="STM1939" /note="putative RBS for STM1939; RegulonDB:STMS1H002102" gene complement(2033125..2034570) /locus_tag="STM1940" /db_xref="GeneID:1253461" CDS complement(2033125..2034564) /locus_tag="STM1940" /codon_start=1 /transl_table=11 /product="putative cell wall-associated hydrolase" /protein_id="NP_460896.1" /db_xref="GI:16765281" /db_xref="GeneID:1253461" /translation="MMMQKKTWAVLLIPLCLTACHQTTYRSTAKDEIFTGSYIDPTKT RFPLADYSQSVDKWIPPDSADYTIPVIDNATQQRYFNALKSHYFGMDSEAHSPWNGFY ITALLKKNAAQARDASIKQFLSDGSAYWGENFRLYTSRWKEEVRGNTDTQIDNIYHAS RRGIMVRESLVRALPTDDPLFNDPRQAGEGYPFDNLQMSSLRPGTPVYTLTKSKDQRW QYVVSPAVTGWVHSEDIASTDQKFITQWVLLAHKQLGAFINAPVSVHVAGVYYFTGRP GTILPFRHQRAGQFLIAAPVRGSNGRAFIHWVWLSGNEFTAMPWKMTPENIAVLMKAM YGAPYGWGNFNFYNDCSAEIRSLLMPFGIFLPRHSSAQVEAAGRVVDLSHKSPQMRID YLTRYGKPFTTLVYIPGHIMLYIGNTTMNGQVVPMTYQNIWGLRPNHANSRSIIGEAV FLPLLRFYPESPELISLAGKVLFKLGYIE" regulatory complement(2034565..2034570) /regulatory_class="ribosome_binding_site" /locus_tag="STM1940" /note="putative RBS for STM1940; RegulonDB:STMS1H002103" gene complement(2034777..2035109) /locus_tag="STM1941" /db_xref="GeneID:1253462" CDS complement(2034777..2035109) /locus_tag="STM1941" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460897.1" /db_xref="GI:16765282" /db_xref="GeneID:1253462" /translation="MLICFMPALLKRVGLPVKYTDNAKLFISFINIGIVGCALLLFFI LYEPESAIVTYSFPGELSSSTCDARNFIGYVDENDFAEYIKKVELTRYSMYCLKKTGA GQWSIYAN" gene complement(2035363..2035446) /gene="leuZ" /locus_tag="STM1942" /db_xref="GeneID:1253463" tRNA complement(2035363..2035446) /gene="leuZ" /locus_tag="STM1942" /product="tRNA-Leu" /db_xref="GeneID:1253463" gene complement(2035461..2035531) /gene="cysT" /locus_tag="STM1943" /db_xref="GeneID:1253464" tRNA complement(2035461..2035531) /gene="cysT" /locus_tag="STM1943" /product="tRNA-Cys" /db_xref="GeneID:1253464" gene complement(2035587..2035659) /gene="glyW" /locus_tag="STM1944" /db_xref="GeneID:1253465" tRNA complement(2035587..2035659) /gene="glyW" /locus_tag="STM1944" /product="tRNA-Gly" /db_xref="GeneID:1253465" gene complement(2035810..2036377) /gene="pgsA" /locus_tag="STM1945" /db_xref="GeneID:1253466" CDS complement(2035810..2036358) /gene="pgsA" /locus_tag="STM1945" /EC_number="2.7.8.5" /note="CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase; similar to E. coli phosphatidylglycerophosphate synthetase = CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase (AAC74979.1); Blastp hit to AAC74979.1 (182 aa), 94% identity in aa 1 - 182" /codon_start=1 /transl_table=11 /product="CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase" /protein_id="NP_460898.1" /db_xref="GI:16765283" /db_xref="GeneID:1253466" /translation="MQFNIPTLLTLFRVILIPFFVVVFYLPFAWAPMVSALIFCIAAI TDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIARE IIISALREWMAELGKRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVA AVLTLWSMLQYLSAARGDLLDQ" regulatory complement(2036372..2036377) /regulatory_class="ribosome_binding_site" /gene="pgsA" /locus_tag="STM1945" /note="putative RBS for pgsA; RegulonDB:STMS1H002105" gene complement(2036415..2038267) /gene="uvrC" /locus_tag="STM1946" /db_xref="GeneID:1253467" CDS complement(2036415..2038247) /gene="uvrC" /locus_tag="STM1946" /note="forms a DNA excision repair enzyme with UvrAB; excinuclease ABC subunit C. (SW:UVRC_SALTY)" /codon_start=1 /transl_table=11 /product="excinuclease ABC subunit C" /protein_id="NP_460899.1" /db_xref="GI:16765284" /db_xref="GeneID:1253467" /translation="MSEIFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLS SYFRSNLASRKTEALVAQIQHIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSY PFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR NRSRPCLQYQIGRCLGPCVAGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLIARMEKAS QDLAFEEAARIRDQIQAVRRVTEKQFVSNAGDDLDVIGVAFDAGMACVHVLFIRQGKV LGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLS ELAGRRIHVQTKPRGDRARYLKLARTNAATALITKLSQQSTITQRLSALAAVLKLPAI KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNIAGITPGDDYAAMNQVLRRRY GKAIEESKIPDVILIDGGKGQLAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLET LFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGP KRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH" gene complement(2038244..2038914) /gene="uvrY" /locus_tag="STM1947" /db_xref="GeneID:1253468" CDS complement(2038244..2038900) /gene="uvrY" /locus_tag="STM1947" /note="similar to E. coli putative 2-component transcriptional regulator (AAC74981.1); Blastp hit to AAC74981.1 (218 aa), 96% identity in aa 1 - 218" /codon_start=1 /transl_table=11 /product="two-component system response regulator UvrY" /protein_id="NP_460900.1" /db_xref="GI:16765285" /db_xref="GeneID:1253468" /translation="MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCR TNAVDVVLMDMNMPGIGGLEATRKIARSTADIKVIMLTVHTENPLPAKVMQAGAAGYL SKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPAKTETPFASLSERELQIMLM ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLTSQ " regulatory complement(2038262..2038267) /regulatory_class="ribosome_binding_site" /gene="uvrY" /locus_tag="STM1947" /note="putative RBS for uvrC; RegulonDB:STMS1H002106" regulatory complement(2038909..2038914) /regulatory_class="ribosome_binding_site" /gene="uvrY" /locus_tag="STM1947" /note="putative RBS for uvrY; RegulonDB:STMS1H002107" gene 2039208..2039367 /locus_tag="STM1948" /db_xref="GeneID:1253469" regulatory 2039208..2039213 /regulatory_class="ribosome_binding_site" /locus_tag="STM1948" /note="putative RBS for STM1948; RegulonDB:STMS1H002108" CDS 2039212..2039367 /locus_tag="STM1948" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_448360.1" /db_xref="GI:1109557664" /db_xref="GeneID:1253469" /translation="MHHAATFILWVTPPLFDQKTTTAIFSVAYGILRRLNICYRTFSL KHNEENK" gene 2039353..2039588 /gene="yecF" /locus_tag="STM1949" /db_xref="GeneID:1253470" regulatory 2039353..2039358 /regulatory_class="ribosome_binding_site" /locus_tag="STM1948" /note="putative RBS for yecF; RegulonDB:STMS1H002109" CDS 2039364..2039588 /gene="yecF" /locus_tag="STM1949" /note="similar to E. coli orf, hypothetical protein (AAC74982.1); Blastp hit to AAC74982.1 (74 aa), 87% identity in aa 1 - 74" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460902.1" /db_xref="GI:16765287" /db_xref="GeneID:1253470" /translation="MSTPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILK MEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ" gene complement(2039655..2040395) /gene="sdiA" /locus_tag="STM1950" /db_xref="GeneID:1253471" CDS complement(2039655..2040377) /gene="sdiA" /locus_tag="STM1950" /note="LuxR/UhpA family; similar to E. coli transcriptional regulator of ftsQAZ gene cluster (AAC74983.1); Blastp hit to AAC74983.1 (240 aa), 71% identity in aa 1 - 240" /codon_start=1 /transl_table=11 /product="transcriptional regulator SdiA" /protein_id="NP_460903.1" /db_xref="GI:16765288" /db_xref="GeneID:1253471" /translation="MQENDFFTWRRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYAL CVRHPVPFTRPKISLRTTYPPAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDVLFHE AKAMWDAAQRFGLRRGVTQCVMLPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARE SLSALTRFEDDMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNM QKKFNAPNKTQIACYAAATGLI" regulatory complement(2040390..2040395) /regulatory_class="ribosome_binding_site" /gene="sdiA" /locus_tag="STM1950" /note="putative RBS for sdiA; RegulonDB:STMS1H002110" gene complement(2040609..2041378) /gene="yecC" /locus_tag="STM1951" /db_xref="GeneID:1253472" CDS complement(2040609..2041361) /gene="yecC" /locus_tag="STM1951" /note="ATPase component; similar to E. coli putative ATP-binding component of a transport system (AAC74984.1); Blastp hit to AAC74984.1 (250 aa), 92% identity in aa 1 - 250" /codon_start=1 /transl_table=11 /product="L-cystine ABC transporter ATP-binding protein YecC" /protein_id="NP_460904.1" /db_xref="GI:16765289" /db_xref="GeneID:1253472" /translation="MSAIEVTNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTT LLRCINLLEQPEAGTIKVGDIIIDTARPFSQQKGLIRQLRQHVGFVFQSFNLFPHRTV LENIIEGPVIVKGEPKAEATALARELLAKVGLAGKESRYPRRLSGGQQQRVAIARALA MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD QGQIVEQGPAKTLFADPQHPRTRQFLEKFLVK" gene complement(2041358..2042042) /gene="yecS" /locus_tag="STM1952" /db_xref="GeneID:1253473" CDS complement(2041358..2042026) /gene="yecS" /locus_tag="STM1952" /note="permease component; similar to E. coli putative transport system permease protein (former yecC) (AAC74985.1); Blastp hit to AAC74985.1 (222 aa), 93% identity in aa 1 - 222" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter permease" /protein_id="NP_460905.1" /db_xref="GI:16765290" /db_xref="GeneID:1253473" /translation="MQESIQLVIESLPYLLKGAVFTLQLSIGGMFFGLLLGFVLALMR MSPLWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQFGIELDPIPAAMIGLSLNTAAY TSETLRAAISAIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDT SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNRQE REPK" regulatory complement(2041373..2041378) /regulatory_class="ribosome_binding_site" /gene="yecS" /locus_tag="STM1952" /note="putative RBS for yecC; RegulonDB:STMS1H002111" regulatory complement(2042037..2042042) /regulatory_class="ribosome_binding_site" /gene="yecS" /locus_tag="STM1952" /note="putative RBS for yecS; RegulonDB:STMS1H002112" gene complement(2042047..2043044) /gene="yedO" /locus_tag="STM1953" /db_xref="GeneID:1253474" CDS complement(2042047..2043033) /gene="yedO" /locus_tag="STM1953" /EC_number="3.5.99.7" /note="similar to E. coli putative 1-aminocyclopropane-1-carboxylate deaminase (AAC74986.1); Blastp hit to AAC74986.1 (360 aa), 90% identity in aa 33 - 360" /codon_start=1 /transl_table=11 /product="D-cysteine desulfhydrase" /protein_id="NP_460906.1" /db_xref="GI:16765291" /db_xref="GeneID:1253474" /translation="MPLHHLTRFPRLEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTP IAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENP IGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYVIPVGG SSALGAMGYVESALEIAQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGV TVSRSVAEQKPKVIALQQAIAGQLALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLA SLEGVLLDPVYTGKAMAGLIDGISQKRFNDDGPILFIHTGGAPALFAYHPHV" regulatory complement(2043039..2043044) /regulatory_class="ribosome_binding_site" /gene="yedO" /locus_tag="STM1953" /note="putative RBS for yedO; RegulonDB:STMS1H002113" gene complement(2043187..2043998) /gene="fliY" /locus_tag="STM1954" /db_xref="GeneID:1253475" CDS complement(2043187..2043987) /gene="fliY" /locus_tag="STM1954" /note="similar to E. coli putative periplasmic binding transport protein (AAC74987.1); Blastp hit to AAC74987.1 (266 aa), 92% identity in aa 1 - 266" /codon_start=1 /transl_table=11 /product="cystine ABC transporter substrate-binding protein" /protein_id="NP_460907.1" /db_xref="GI:16765292" /db_xref="GeneID:1253475" /translation="MKLALLGRQALMGVMAVALVAGMSAKSFADEGLLNKVKERGTLL VGLEGTYPPFSFQGEDGKLTGFEVDFAEALAKHLGVKASLKPTKWDGMLASLDAKRID VVINQVTISDVRKKKYDFSTPYTVSGIQALVKKGNEGTIKTAADLQGKKVGVGLGTNY EEWLRQHVQGVDIRTYDDDPTKYQDLRVGRIDAILVDRLAALDLVKKTKGTLAVTGDA FSRQESGVALRKGNEDLLKAVDNAIAEMQKDGTLKALSEKWFGADVTQ" regulatory complement(2043993..2043998) /regulatory_class="ribosome_binding_site" /gene="fliY" /locus_tag="STM1954" /note="putative RBS for fliY; RegulonDB:STMS1H002114" gene complement(2044134..2044696) /gene="fliZ" /locus_tag="STM1955" /db_xref="GeneID:1253476" CDS complement(2044134..2044685) /gene="fliZ" /locus_tag="STM1955" /note="FLIZ protein. (SW:FLIZ_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar regulatory protein FliZ" /protein_id="NP_460908.1" /db_xref="GI:16765293" /db_xref="GeneID:1253476" /translation="MTVQQPKRRPLSRYLKDFKHSQTHCAHCHKLLDRITLVRRGKIV NKIAISQLDMLLDDAAWQREQKEWVALCRFCGDLHCKKQSDFFDIIGFKQYLFEQTEM SHGTVREYVVRLRRLGNYLSEQNISHDLLQDGFLDESLAPWLPETSTNNYRIALRKYQ QYKAHQQIAPRQKSPFTASSDIY" regulatory complement(2044691..2044696) /regulatory_class="ribosome_binding_site" /gene="fliZ" /locus_tag="STM1955" /note="putative RBS for fliZ; RegulonDB:STMS1H002115" gene complement(2044744..2045477) /gene="fliA" /locus_tag="STM1956" /db_xref="GeneID:1253477" CDS complement(2044744..2045463) /gene="fliA" /locus_tag="STM1956" /note="transcription of late flagellar genes (class 3a and 3b operons); RNA polymerase sigma factor for flagellar operon (sigma-f factor)(sigma-27) (sigma-28). (SW:FLIA_SALTY)" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma factor FliA" /protein_id="NP_460909.1" /db_xref="GI:16765294" /db_xref="GeneID:1253477" /translation="MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDL LQAGGIGLLNAVDRYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQ AMGQLEQELGRNATETEVAERLGIPVAEYRQMLLDTNNSQLFSYDEWREEHGDSIELV TEEHQQENPLHQLLEGDLRQRVMDAIESLPEREQLVLTLYYQEELNLKEIGAVLEVGE SRVSQLHSQAIKRLRTKLGKL" regulatory complement(2045472..2045477) /regulatory_class="ribosome_binding_site" /gene="fliA" /locus_tag="STM1956" /note="putative RBS for fliA; RegulonDB:STMS1H002116" mobile_element complement(2045625..2046333) /mobile_element_type="insertion sequence:IS200_2" gene complement(2045732..2046196) /gene="tnpA_2" /locus_tag="STM1957" /db_xref="GeneID:1253478" CDS complement(2045732..2046190) /gene="tnpA_2" /locus_tag="STM1957" /note="transposase for insertion sequence element is200 (SW:T200_SALTY)" /codon_start=1 /transl_table=11 /product="IS200 family transposase" /protein_id="NP_460910.3" /db_xref="GI:1109557665" /db_xref="GeneID:1253478" /translation="MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKL CEWKNVRILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRN REFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTGRK" regulatory complement(2046191..2046196) /regulatory_class="ribosome_binding_site" /gene="tnpA_2" /locus_tag="STM1957" /note="putative RBS for tnpA_2; RegulonDB:STMS1H002117" gene complement(2046371..2047583) /gene="fliB" /locus_tag="STM1958" /db_xref="GeneID:1253479" CDS complement(2046371..2047576) /gene="fliB" /locus_tag="STM1958" /note="lysine-N-methylase. (SW:FLIB_SALTY)" /codon_start=1 /transl_table=11 /product="lysine-N-methylase" /protein_id="NP_460911.1" /db_xref="GI:16765296" /db_xref="GeneID:1253479" /translation="MKEITVTEPAFVTRFSCSGSACRDHCCKGWKITLDKTTVKKYLA SKDTTIRTIAQDHIILLKKNNSHWGEIKLPSALGNCPYLDEDRLCRVQKTLGAKALSH TCSSFPRAHHTYKNEVRNSLSLACPEVTSRILNDPDAMALSEKTIIQQTFNTAPLFPA QQKLLNLFCLSLINHANSSTEAALYALIKFVMYAQKFAKIDDAALGELEQVYAALLEQ LQTGVLAQELMNIAPDSKVKTSLVLQMQDYFRSLPLNRGSVILDHYIQCLLRVLTAEE GVSMEQKVSDIESSLARCLQANEQQKNWAFRNLILYKIWENNFPNQPNVDPLRALYII VAEYAFIKLLTAASVHERGRIEWDDVTNIVYSFHSRSQHNSEVAKNFHRHIETVRTGD DLSMIHLLT" regulatory complement(2047578..2047583) /regulatory_class="ribosome_binding_site" /gene="fliB" /locus_tag="STM1958" /note="putative RBS for fliB; RegulonDB:STMS1H002118" gene complement(2047655..2049154) /gene="fliC" /locus_tag="STM1959" /db_xref="GeneID:1253480" CDS complement(2047655..2049142) /gene="fliC" /locus_tag="STM1959" /note="filament structural protein; flagellin (phase-1-I flagellin). (SW:FLIC_SALTY)" /codon_start=1 /transl_table=11 /product="flagellin" /protein_id="NP_460912.1" /db_xref="GI:16765297" /db_xref="GeneID:1253480" /translation="MAQVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDD AAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANS TNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDL KQINSQTLGLDTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKID GDLKFDDTTGKYYAKVTVTGGTGKDGYYEVSVDKTNGEVTLAGGATSPLTGGLPATAT EDVKNVQVANADLTEAKAALTAAGVTGTASVVKMSYTDNNGKTIDGGLAVKVGDDYYS ATQNKDGSISINTTKYTADDGTSKTALNKLGGADGKTEVVSIGGKTYAASKAEGHNFK AQPDLAEAAATTTENPLQKIDAALAQVDTLRSDLGAVQNRFNSAITNLGNTVNNLTSA RSRIEDSDYATEVSNMSRAQILQQAGTSVLAQANQVPQNVLSLLR" regulatory complement(2049149..2049154) /regulatory_class="ribosome_binding_site" /gene="fliC" /locus_tag="STM1959" /note="putative RBS for fliC; RegulonDB:STMS1H002119" gene 2049387..2050802 /gene="fliD" /locus_tag="STM1960" /db_xref="GeneID:1253481" regulatory 2049387..2049392 /regulatory_class="ribosome_binding_site" /gene="fliD" /locus_tag="STM1960" /note="putative RBS for fliD; RegulonDB:STMS1H002120" CDS 2049399..2050802 /gene="fliD" /locus_tag="STM1960" /note="flagellar biosynthesis; enables filament assembly; flagellar hook-associated protein 2 (HAP2) (filament CAP protein)(flagellar CAP protein). (SW:FLID_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar filament-capping protein FliD" /protein_id="NP_460913.1" /db_xref="GI:16765298" /db_xref="GeneID:1253481" /translation="MASISSLGVGSNLPLDQLLTDLTKNEKGRLTPITKQQSANSAKL TAYGTLKSALEKFQTANTALNKADLFKSTVASSTTEDLKVSTTAGAAAGTYKINVTQL AAAQSLATKTTFATTKEQLGDTSVTSRTIKIEQPGRKEPLEIKLDKGDTSMEAIRDAI NDADSGIAASIVKVKENEFQLVLTANSGTDNTMKITVEGDTKLNDLLAYDSTTNTGNM QELVKAENAKLNVNGIDIERQSNTVTDAPQGITLTLTKKVTDATVTVTKDDTKAKEAI KSWVDAYNSLVDTFSSLTKYTAVEPGEEASDKNGALLGDSVVRTIQTGIRAQFANSGS NSAFKTMAEIGITQDGTSGKLKIDDDKLTKVLKDNTAAARELLVGDGKETGITTKIAT EVKSYLADDGIIDNAQDNVNATLKSLTKQYLSVSNSIDETVARYKAQFTQLDTMMSKL NNTSSYLTQQFTAMNKS" gene 2050808..2051224 /gene="fliS" /locus_tag="STM1961" /db_xref="GeneID:1253482" regulatory 2050808..2050813 /regulatory_class="ribosome_binding_site" /gene="fliS" /locus_tag="STM1961" /note="putative RBS for fliS; RegulonDB:STMS1H002121" CDS 2050817..2051224 /gene="fliS" /locus_tag="STM1961" /note="flagellar biosynthesis; flagellar protein FLIS. (SW:FLIS_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar export chaperone FliS" /protein_id="NP_460914.1" /db_xref="GI:16765299" /db_xref="GeneID:1253482" /translation="MYTASGIKAYAQVSVESAVMSASPHQLIEMLFDGANSALVRARL FLEQGDVVAKGEALSKAINIIDNGLKAGLDQEKGGEIATNLSELYDYMIRRLLQANLR NDAQAIEEVEGLLSNIAEAWKQISPKASFQESR" gene 2051210..2051592 /gene="fliT" /locus_tag="STM1962" /db_xref="GeneID:1253483" regulatory 2051210..2051215 /regulatory_class="ribosome_binding_site" /gene="fliT" /locus_tag="STM1962" /note="putative RBS for fliT; RegulonDB:STMS1H002122" CDS 2051224..2051592 /gene="fliT" /locus_tag="STM1962" /note="flagellar biosynthesis; flagellar protein FLIT. (SW:FLIT_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein FliT" /protein_id="NP_460915.1" /db_xref="GI:16765300" /db_xref="GeneID:1253483" /translation="MTSTVEFINRWQRIALLSQSLLELAQRGEWDLLLQQEVSYLQSI ETVMEKQTPPGITRSIQDMVAGYIKQTLDNEQLLKGLLQQRLDELSSLIGQSTRQKSL NNAYGRLSGMLLVPDAPGAS" gene 2051650..2053148 /gene="amyA" /locus_tag="STM1963" /db_xref="GeneID:1253484" regulatory 2051650..2051655 /regulatory_class="ribosome_binding_site" /gene="amyA" /locus_tag="STM1963" /note="putative RBS for amyA; RegulonDB:STMS1H002123" CDS 2051664..2053148 /gene="amyA" /locus_tag="STM1963" /EC_number="3.2.1.1" /note="cytoplasmic alpha-amylase. (SW:AMY2_SALTY)" /codon_start=1 /transl_table=11 /product="alpha-amylase" /protein_id="NP_460916.1" /db_xref="GI:16765301" /db_xref="GeneID:1253484" /translation="MKNPTLLQYFHWYYPDGGKLWSELAERADGLNDIGINMVWLPPA CKGASGGYSVGYDTYDLFDLGEFDQKGTIATKYGDKRQLLTAIDALKKNNIAVLLDVV VNHKMGADEKERIRVQRVNQDDRTQIDDNIIECEGWTRYTFPARAGQYSNFIWDYHCF SGIDHIENPDEDGIFKIVNDYTGDGWNDQVDDEMGNFDYLMGENIDFRNHAVTEEIKY WARWVMEQTHCDGFRLDAVKHIPAWFYKEWIEHVQAVAPKPLFIVAEYWSHEVDKLQT YIDQVDGKTMLFDAPLQMKFHEASRQGAEYDMRHIFTGTLVEADPFHAVTLVANHDTQ PLQALEAPVEPWFKPLAYALILLRENGVPSVFYPDLYGASYEDSGENGETCRVDMPVI NQLDRLILARQRFAHGIQTLFFDHPNCIAFSRSGTEENPGCVVVLSNGDDGEKTLLLG DNYANKTWRDFLGNRDEYVVTNDQGEATFFCNAGSVSVWVIEDV" gene complement(2053188..2053624) /gene="yedD" /locus_tag="STM1964" /db_xref="GeneID:1253485" CDS complement(2053188..2053613) /gene="yedD" /locus_tag="STM1964" /note="hypothetical 15.5 Kda protein in amyA-fliE intergenic region. (SW:YEDD_SALTY)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460917.1" /db_xref="GI:16765302" /db_xref="GeneID:1253485" /translation="MKKVAIVGALLVLAGCAEVENYNDVVKTPAPAGLEGYWQSKGPQ RKLVSPEAIASLVVTKEGDTLDCRQWQRVIALPGKLTMLSDDLTNVTVKRELYEIERD GNTLEYDGMTLQRVARPTPECAAALEKTPLPTPLPTPLP" regulatory complement(2053619..2053624) /regulatory_class="ribosome_binding_site" /gene="yedD" /locus_tag="STM1964" /note="putative RBS for yedD; RegulonDB:STMS1H002124" gene 2053721..2055004 /gene="yedE" /locus_tag="STM1965" /db_xref="GeneID:1253486" regulatory 2053721..2053726 /regulatory_class="ribosome_binding_site" /gene="yedE" /locus_tag="STM1965" /note="putative RBS for yedE; RegulonDB:STMS1H002125" CDS 2053739..2055004 /gene="yedE" /locus_tag="STM1965" /note="hypothetical 44.2 Kda protein in amyA-fliE intergenic region. (SW:YEDE_SALTY)" /codon_start=1 /transl_table=11 /product="putative membrane component of transport system" /protein_id="NP_460918.3" /db_xref="GI:1109557666" /db_xref="GeneID:1253486" /translation="MIGVVCALLVSHLLSSEAKHMSWQHFKQTWLIKFWAPAPAVIAA GILSTYYFGITGTFWAVTGEFTRWGGQILQLFGVHAEQWGYYKLIHLEGTPLTRIDGM MILGMFGGCFAAALWANNVKLRMPRSRIRIVQAVAGGIIAGFGARLAMGCNLAAFFTG IPQFSLHAWFFALATAIGSWFGARFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRFR LGMLVFIGMIGWALLTAMHQPKLGLAMLFGVGFGLLIERAQICFTSAFRDLWISGRAH MAKAIIFGMAVSAIGIFSYVQLGVAPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMY RAVEGQVHYWWVGLGNVIGSTILAYYWDDFAPALATSWDKVNLLNTFGPLGGLLVTYL LLFTALMLIIGWEKRFFRRAGLTPAKESV" gene 2054990..2055234 /gene="yedF" /locus_tag="STM1966" /db_xref="GeneID:1253487" regulatory 2054990..2054995 /regulatory_class="ribosome_binding_site" /gene="yedF" /locus_tag="STM1966" /note="putative RBS for yedF; RegulonDB:STMS1H002126" CDS 2055001..2055234 /gene="yedF" /locus_tag="STM1966" /note="hypothetical 8.6 Kda protein in amyA-fliE intergenic region (ORF 9). (SW:YEDF_ECOLI)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460919.1" /db_xref="GI:16765304" /db_xref="GeneID:1253487" /translation="MKNIVPDYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCP QSINNIPLDARNHGYTVLDIQQDGPTIRYLIQK" gene 2055492..2055885 /locus_tag="STM1967" /db_xref="GeneID:13865721" regulatory 2055492..2055497 /regulatory_class="ribosome_binding_site" /locus_tag="STM1967" /note="putative RBS for STM1967; RegulonDB:STMS1H002127" CDS 2055499..2055885 /locus_tag="STM1967" /codon_start=1 /transl_table=11 /product="putative 50S ribosomal protein" /protein_id="NP_448379.1" /db_xref="GI:1109557667" /db_xref="GeneID:13865721" /translation="MIYLCTAEAKKMIKIIFISIIGVVCLAAARYSPVTVVNAHPSAI ARCLADNLSPYGYILDLHETDIPGINKEFTVYYRNGAYIAGTFWIANSMTIASERIVG MNGVSKQAYPIFNKSLQQCATRLSIK" gene complement(2056005..2056331) /gene="fliE" /locus_tag="STM1968" /db_xref="GeneID:1253489" CDS complement(2056005..2056319) /gene="fliE" /locus_tag="STM1968" /note="flagellar hook-basal body complex protein FLIE. (SW:FLIE_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar hook-basal body complex protein FliE" /protein_id="NP_460921.1" /db_xref="GI:16765306" /db_xref="GeneID:1253489" /translation="MAAIQGIEGVISQLQATAMAARGQDTHSQSTVSFAGQLHAALDR ISDRQAAARVQAEKFTLGEPGIALNDVMADMQKASVSMQMGIQVRNKLVAAYQEVMSM QV" regulatory complement(2056326..2056331) /regulatory_class="ribosome_binding_site" /gene="fliE" /locus_tag="STM1968" /note="putative RBS for fliE; RegulonDB:STMS1H002128" gene 2056526..2058218 /gene="fliF" /locus_tag="STM1969" /db_xref="GeneID:1253490" regulatory 2056526..2056531 /regulatory_class="ribosome_binding_site" /gene="fliF" /locus_tag="STM1969" /note="putative RBS for fliF; RegulonDB:STMS1H002129" CDS 2056536..2058218 /gene="fliF" /locus_tag="STM1969" /note="flagellar biosynthesis; flagellar M-ring protein. (SW:FLIF_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar M-ring protein FliF" /protein_id="NP_460922.1" /db_xref="GI:16765307" /db_xref="GeneID:1253490" /translation="MSATASTATQPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVL WAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQ QGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMP KPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGH LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKE QTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTN QQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVN YKTLADGKPLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELPFW QQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAV EVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWMSNDHE" gene 2058194..2059206 /gene="fliG" /locus_tag="STM1970" /db_xref="GeneID:1253491" regulatory 2058194..2058199 /regulatory_class="ribosome_binding_site" /gene="fliG" /locus_tag="STM1970" /note="putative RBS for fliG; RegulonDB:STMS1H002130" CDS 2058211..2059206 /gene="fliG" /locus_tag="STM1970" /note="component of motor switching and energizing; flagellar motor switch protein FLIG. (SW:FLIG_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar motor switch protein FliG" /protein_id="NP_460923.1" /db_xref="GI:16765308" /db_xref="GeneID:1253491" /translation="MSNLSGTDKSVILLMTIGEDRAAEVFKHLSTREVQALSTAMANV RQISNKQLTDVLSEFEQEAEQFAALNINANEYLRSVLVKALGEERASSLLEDILETRD TTSGIETLNFMEPQSAADLIRDEHPQIIATILVHLKRSQAADILALFDERLRHDVMLR IATFGGVQPAALAELTEVLNGLLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAV REFDGELAQKIIDEMFLFENLVDVDDRSIQRLLQEVDSESLLIALKGAEPPLREKFLR NMSQRAADILRDDLANRGPVRLSQVENEQKAILLIVRRLAETGEMVIGSGEDTYV" gene 2059189..2059906 /gene="fliH" /locus_tag="STM1971" /db_xref="GeneID:1253492" regulatory 2059189..2059194 /regulatory_class="ribosome_binding_site" /gene="fliH" /locus_tag="STM1971" /note="putative RBS for fliH; RegulonDB:STMS1H002131" CDS 2059199..2059906 /gene="fliH" /locus_tag="STM1971" /note="possible export of flagellar proteins; flagellar assembly protein FLIH. (SW:FLIH_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar assembly protein FliH" /protein_id="NP_460924.1" /db_xref="GI:16765309" /db_xref="GeneID:1253492" /translation="MSNELPWQVWTPDDLAPPPETFVPVEADNVTLTEDTPEPELTAE QQLEQELAQLKIQAHEQGYNAGLAEGRQKGHAQGYQEGLAQGLEQGQAQAQTQQAPIH ARMQQLVSEFQNTLDALDSVIASRLMQMALEAARQVIGQTPAVDNSALIKQIQQLLQQ EPLFSGKPQLRVHPDDLQRVEEMLGATLSLHGWRLRGDPTLHHGGCKVSADEGDLDAS VATRWQELCRLAAPGVL" gene 2059886..2061276 /gene="fliI" /locus_tag="STM1972" /db_xref="GeneID:1253493" regulatory 2059886..2059891 /regulatory_class="ribosome_binding_site" /gene="fliH" /locus_tag="STM1971" /note="putative RBS for fliI; RegulonDB:STMS1H002132" CDS 2059906..2061276 /gene="fliI" /locus_tag="STM1972" /EC_number="3.6.3.14" /note="flagellum-specific ATP synthase. (SW:FLII_SALTY)" /codon_start=1 /transl_table=11 /product="flagellum-specific ATP synthase FliI" /protein_id="NP_460925.1" /db_xref="GI:16765310" /db_xref="GeneID:1253493" /translation="MTTRLTRWLTALDNFEAKMALLPAVRRYGRLTRATGLVLEATGL QLPLGATCIIERQDGPETKEVESEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGD GLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLD TGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKD FIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTR YAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD QQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALITEQHYARVRLFK QLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLWPQLEAFLQQGIFERADWEDSLQALD LIFPTV" gene 2061282..2061741 /gene="fliJ" /locus_tag="STM1973" /db_xref="GeneID:1253494" regulatory 2061282..2061287 /regulatory_class="ribosome_binding_site" /gene="fliJ" /locus_tag="STM1973" /note="putative RBS for fliJ; RegulonDB:STMS1H002133" CDS 2061298..2061741 /gene="fliJ" /locus_tag="STM1973" /note="flagellar FLIJ protein. (SW:FLIJ_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis chaperone FliJ" /protein_id="NP_460926.1" /db_xref="GI:16765311" /db_xref="GeneID:1253494" /translation="MAQHGALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLID YQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWR EKKQRLQAWQTLQDRQTAAALLAENRMDQKKMDEFAQRAAMRKPE" gene 2061726..2062955 /gene="fliK" /locus_tag="STM1974" /db_xref="GeneID:1253495" regulatory 2061726..2061731 /regulatory_class="ribosome_binding_site" /gene="fliJ" /locus_tag="STM1973" /note="putative RBS for fliK; RegulonDB:STMS1H002134" CDS 2061738..2062955 /gene="fliK" /locus_tag="STM1974" /note="flagellar hook-length control protein. (SW:FLIK_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar hook-length control protein FliK" /protein_id="NP_460927.1" /db_xref="GI:16765312" /db_xref="GeneID:1253495" /translation="MITLPQLITTDTDMTAGLTSGKTTGSAEDFLALLAGALGADGAQ GKDARITLADLQAAGGKLSKELLTQHGEPGQAVKLADLLAQKANATDETLTDLTQAQH LLSTLTPSLKTSALAALSKTAQHDEKTPALSDEDLASLSALFAMLPGQPVATPVAGET PAENHIALPSLLRGDMPSAPQEETHTLSFSEHEKGKTEASLARASDDRATGPALTPLV VAAAATSAKVEVDSPPAPVTHGAAMPTLSSATAQPLPVASAPVLSAPLGSHEWQQTFS QQVMLFTRQGQQSAQLRLHPEELGQVHISLKLDDNQAQLQMVSPHSHVRAALEAALPM LRTQLAESGIQLGQSSISSESFAGQQQSSSQQQSSRAQHTDAFGAEDDIALAAPASLQ AAARGNGAVDIFA" gene 2063043..2063527 /gene="fliL" /locus_tag="STM1975" /db_xref="GeneID:1253496" regulatory 2063043..2063048 /regulatory_class="ribosome_binding_site" /gene="fliL" /locus_tag="STM1975" /note="putative RBS for fliL; RegulonDB:STMS1H002135" CDS 2063060..2063527 /gene="fliL" /locus_tag="STM1975" /note="flagellar FLIL protein. (SW:FLIL_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar basal body-associated protein FliL" /protein_id="NP_460928.1" /db_xref="GI:16765313" /db_xref="GeneID:1253496" /translation="MTDSAINKKSKRSIWIPLLVLITLAACATAGYSYWRMQQQPTTN AKAEPAPPPAPVFFALDTFTVNLGDADRVLYIGVTLRLKDEATRARLNEYLPEVRSRL LLLFSRQNAAELSTEAGKQKLIAAIKETLAAPLVAGQPKQVVTDVLYTAFILR" gene 2063521..2064536 /gene="fliM" /locus_tag="STM1976" /db_xref="GeneID:1253497" regulatory 2063521..2063526 /regulatory_class="ribosome_binding_site" /gene="fliL" /locus_tag="STM1975" /note="putative RBS for fliM; RegulonDB:STMS1H002136" CDS 2063532..2064536 /gene="fliM" /locus_tag="STM1976" /note="component of motor switch and energizing; flagellar motor switch protein FLIM. (SW:FLIM_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar motor switch protein FliM" /protein_id="NP_460929.1" /db_xref="GI:16765314" /db_xref="GeneID:1253497" /translation="MGDSILSQAEIDALLNGDSDTKDEPTPGIASDSDIRPYDPNTQR RVVRERLQALEIINERFARQFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL NLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKL ALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNIC LPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFADIPLRLSQIL KLKPGDVLPIEKPDRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINPILNSLNEEQPK " gene 2064519..2064946 /gene="fliN" /locus_tag="STM1977" /db_xref="GeneID:1253498" regulatory 2064519..2064524 /regulatory_class="ribosome_binding_site" /gene="fliN" /locus_tag="STM1977" /note="putative RBS for fliN; RegulonDB:STMS1H002137" CDS 2064533..2064946 /gene="fliN" /locus_tag="STM1977" /note="component of motor switch and energizing; flagellar motor switch protein FLIM. (SW:FLIN_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar motor switch protein FliN" /protein_id="NP_460930.1" /db_xref="GI:16765315" /db_xref="GeneID:1253498" /translation="MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGG GDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN GYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR" gene 2064946..2065323 /gene="fliO" /locus_tag="STM1978" /db_xref="GeneID:1253499" CDS 2064946..2065323 /gene="fliO" /locus_tag="STM1978" /note="flagellar protein FLIO. (SW:FLIO_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_460931.3" /db_xref="GI:1109557668" /db_xref="GeneID:1253499" /translation="MMKTEATVSQPTAPAGSPLMQVSGALIGIIALILAAAWVIKRMG FAPKGNSVRGLKVSASASLGPRERVVIVEVENARLVLGVTASQINLLHTLPPAENDTE APVAPPADFQNMMKSLLKRSGRS" gene 2065310..2066060 /gene="fliP" /locus_tag="STM1979" /db_xref="GeneID:1253500" regulatory 2065310..2065315 /regulatory_class="ribosome_binding_site" /gene="fliO" /locus_tag="STM1978" /note="putative RBS for fliP; RegulonDB:STMS1H002138" CDS 2065323..2066060 /gene="fliP" /locus_tag="STM1979" /note="flagellar biosynthetic protein FLIP. (SW:FLIP_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthetic protein FliP" /protein_id="NP_460932.1" /db_xref="GI:16765317" /db_xref="GeneID:1253500" /translation="MRRLLFLSLAGLWLFSPAAAAQLPGLISQPLAGGGQSWSLSVQT LVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMS PVIDKIYVDAYQPFSEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQ GPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIA LPFKLMLFVLVDGWQLLMGSLAQSFYS" gene 2066060..2066339 /gene="fliQ" /locus_tag="STM1980" /db_xref="GeneID:1253501" regulatory 2066060..2066065 /regulatory_class="ribosome_binding_site" /gene="fliQ" /locus_tag="STM1980" /note="putative RBS for fliQ; RegulonDB:STMS1H002139" CDS 2066070..2066339 /gene="fliQ" /locus_tag="STM1980" /note="flagellar biosynthetic protein FLIQ. (SW:FLIQ_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar export apparatus protein FliQ" /protein_id="NP_460933.1" /db_xref="GI:16765318" /db_xref="GeneID:1253501" /translation="MTPESVMMMGTEAMKVALALAAPLLLVALITGLIISILQAATQI NEMTLSFIPKIVAVFIAIIVAGPWMLNLLLDYVRTLFSNLPYIIG" gene 2066332..2067142 /gene="fliR" /locus_tag="STM1981" /db_xref="GeneID:1253502" regulatory 2066332..2066337 /regulatory_class="ribosome_binding_site" /gene="fliQ" /locus_tag="STM1980" /note="putative RBS for fliR; RegulonDB:STMS1H002140" CDS 2066348..2067142 /gene="fliR" /locus_tag="STM1981" /note="flagellar biosynthetic protein FLIR. (SW:FLIR_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthetic protein FliR" /protein_id="NP_460934.1" /db_xref="GI:16765319" /db_xref="GeneID:1253502" /translation="MIQVTSEQWLYWLHLYFWPLLRVLALISTAPILSERAIPKRVKL GLGIMITLVIAPSLPANDTPLFSIAALWLAMQQILIGIALGFTMQFAFAAVRTAGEFI GLQMGLSFATFVDPGSHLNMPVLARIMDMLAMLLFLTFNGHLWLISLLVDTFHTLPIG SNPVNSNAFMALARAGGLIFLNGLMLALPVITLLLTLNLALGLLNRMAPQLSIFVIGF PLTLTVGIMLMAALMPLIAPFCEHLFSEIFNLLADIVSEMPINNNP" gene 2067341..2068047 /gene="rcsA" /locus_tag="STM1982" /db_xref="GeneID:1253503" regulatory 2067341..2067349 /regulatory_class="minus_35_signal" /gene="rcsA" /locus_tag="STM1982" /note="putative -35_signal for rcsA; RegulonDB:STMLTH004522" regulatory 2067365..2067373 /regulatory_class="minus_10_signal" /gene="rcsA" /locus_tag="STM1982" /note="putative -10_signal for rcsA; RegulonDB:STMLTH004522" regulatory 2067413..2067418 /regulatory_class="ribosome_binding_site" /gene="rcsA" /locus_tag="STM1982" /note="putative RBS for rcsA; RegulonDB:STMS1H002141" CDS 2067424..2068047 /gene="rcsA" /locus_tag="STM1982" /note="colanic acid capsular biosynthesis activation protein A. (SW:RCSA_SALTY)" /codon_start=1 /transl_table=11 /product="helix-turn-helix transcriptional regulator" /protein_id="NP_460935.1" /db_xref="GI:16765320" /db_xref="GeneID:1253503" /translation="MSTIIMDLCSYTRLGLSGYLVSRGVKKREINDIETVDELAIACG AHQPSVVFINEDCFIHTPSDSQQIKQIINQHPDTLFIVFMAIANVHFDEYLLVRKNLL ISSKSIKPDSLDTLLGDILKKESGISGTINLPTLSLSRTESSMLRMWMEGQGTIQISD RMNIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTDNVTNGIFVNMR" gene complement(2068086..2068293) /gene="dsrB" /locus_tag="STM1983" /db_xref="GeneID:1253504" ncRNA complement(2068086..2068280) /ncRNA_class="other" /gene="dsrB" /locus_tag="STM1983" /product="regulatory RNA" /note="regulated by DsrA and HNS; under control of RpoS" /db_xref="GeneID:1253504" regulatory complement(2068288..2068293) /regulatory_class="ribosome_binding_site" /gene="dsrB" /locus_tag="STM1983" /note="putative RBS for dsrB; RegulonDB:STMS1H002142" gene 2068397..2068636 /gene="yodD" /locus_tag="STM1984" /db_xref="GeneID:1253505" regulatory 2068397..2068402 /regulatory_class="ribosome_binding_site" /gene="yodD" /locus_tag="STM1984" /note="putative RBS for yodD; RegulonDB:STMS1H002143" CDS 2068409..2068636 /gene="yodD" /locus_tag="STM1984" /note="similar to E. coli orf, hypothetical protein (AAC75020.1); Blastp hit to AAC75020.1 (80 aa), 92% identity in aa 6 - 80" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460936.1" /db_xref="GI:16765321" /db_xref="GeneID:1253505" /translation="MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQEDPERV SVDGREYHTWHELAEAFELDIHDFSVTEVNR" gene complement(2068647..2068736) /gene="dsrA" /locus_tag="STM1985" /db_xref="GeneID:1253506" ncRNA complement(2068647..2068730) /ncRNA_class="other" /gene="dsrA" /locus_tag="STM1985" /product="small RNA antisilencer of the H-HS-silenced rdsA gene in E. coli" /db_xref="GeneID:1253506" regulatory complement(2068731..2068736) /regulatory_class="ribosome_binding_site" /gene="dsrA" /locus_tag="STM1985" /note="putative RBS for dsrA; RegulonDB:STMS1H002144" gene 2068937..2069761 /gene="yedP" /locus_tag="STM1986" /db_xref="GeneID:1253507" regulatory 2068937..2068942 /regulatory_class="ribosome_binding_site" /gene="yedP" /locus_tag="STM1986" /note="putative RBS for yedP; RegulonDB:STMS1H002145" CDS 2068946..2069761 /gene="yedP" /locus_tag="STM1986" /note="similar to E. coli orf, hypothetical protein (AAC75021.1); Blastp hit to AAC75021.1 (271 aa), 75% identity in aa 1 - 269" /codon_start=1 /transl_table=11 /product="mannosyl-3-phosphoglycerate phosphatase" /protein_id="NP_460937.1" /db_xref="GI:16765322" /db_xref="GeneID:1253507" /translation="MLSIHDPLLIFTDLDGTLLNSHTFEWQPAAPWLTRLHESGVPVI LCSSKTAAEMLQLQTTLNLQGLPLIAENGAVIQLDVHWEDHPNYPRLIAGISHNEIRL VLHKLREKEQFKFTTFDDVDDQVISEWTGLNRAQSALTRLHEASVSLIWRDSDERMAQ FVARLNDLGLQFVHGARFWHVLDASAGKDQAANWLIEAYRRQWRARPLTLGLGDGPND APLLDVMDYAVVVKGLNREGVHLRNDDPQRVYRSQNEGPDGWREGMDYFFSRS" gene complement(2069740..2071466) /locus_tag="STM1987" /db_xref="GeneID:1253508" CDS complement(2069740..2071452) /locus_tag="STM1987" /note="similar to E. coli orf, hypothetical protein (AAC75022.1); Blastp hit to AAC75022.1 (569 aa), 65% identity in aa 6 - 567" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="NP_460938.1" /db_xref="GI:16765323" /db_xref="GeneID:1253508" /translation="MPHETLLDNQGWFKKLARRFGPGHVVNTCFLIVMLFSTLLTWRE VMILKDAYVASQRNHLGSVANVLDRQLQFNMDRLIFLRNGMHEALVAPLAFSALQSAV TQFEQRRVRHFWQLELDKRRTLPLYGVSDQFVARTTLLSRESRDLANELTATLELGYL ARLARSSAMLALETMYVSRSGFYLSTLPTAYGSDIVSRYYQYVTQPWFIEQSQRRNSQ RGVRWFTSAQPYVTDEQKKVTASLPLDHDNYWYGVLAMDIPVASLQRFLRDAAEKDIE GEYQLYDNHLRLLTDSAPEQQTANTLNDRERALLAREIEKDTLGGLRLGTHYVSWERL DHFDGILLRVHTLREGIQGNFGSISIALTLLWGLFTAMLLISWGVIRHMVKNMFVLQN SLQWQAWHDPLTRLYNRGALFEKASRLAKRYREARQPFSVIQLDLDYFKSVNDRFGHQ AGDRVLSHAAGLIGSTIRAHDIAGRVGGEEFCIVLPGATKAQALQIAERIRQRINDKE ILVTKSTTLRISASMGISSAEEYGDYDFEQLQSLADKRLYYAKQSGRNRICASDATQE REKK" regulatory complement(2071461..2071466) /regulatory_class="ribosome_binding_site" /locus_tag="STM1987" /note="putative RBS for STM1987; RegulonDB:STMS1H002146" gene complement(2071617..2071862) /locus_tag="STM1988" /db_xref="GeneID:1253509" CDS complement(2071617..2071862) /locus_tag="STM1988" /note="similar to E. coli orf, hypothetical protein (AAC75023.1); Blastp hit to AAC75023.1 (60 aa), 83% identity in aa 1 - 59" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460939.3" /db_xref="GI:1109557669" /db_xref="GeneID:1253509" /translation="MQNCPSSSKVKAFHLIQEAGMVFSVSEEVTVKEGGPRMIVTGYS SGMVECRWYDGFGVKREAFHENELVPGKERRVRDEAR" gene complement(2071879..2072802) /gene="yedI" /locus_tag="STM1989" /db_xref="GeneID:1253510" CDS complement(2071879..2072790) /gene="yedI" /locus_tag="STM1989" /note="similar to E. coli orf, hypothetical protein (AAC75024.1); Blastp hit to AAC75024.1 (305 aa), 85% identity in aa 3 - 305" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460940.1" /db_xref="GI:16765325" /db_xref="GeneID:1253510" /translation="MAGSSLLTLLDDIATLLDDISVMGKLAAKKTAGVLGDDLSLNAQ QVTGVRANRELPVVWSVAKGSLINKVILVPLALLISAFIPWAITPLLMLGGAFLCFEG VEKVLHTFEARKHKEDPAERQKRLEALAAQNPLAFEKDKVKGAVRTDFILSAEIVAIT LGIVAQAPLLNQVLVLAGIALVVTIGVYGLVGIIVKLDDMGYWLAEKRSVLAQGVGKG LLIIAPWLMKALSIVGTLAMFLVGGGIVVHGIAPLHHAIEHFAQQQGAFMAHTIPAGL NLVLGFIIGAIVVALVKGVAKIRGVSH" regulatory complement(2072797..2072802) /regulatory_class="ribosome_binding_site" /gene="yedI" /locus_tag="STM1989" /note="putative RBS for yedI; RegulonDB:STMS1H002147" gene 2072966..2073886 /gene="yedA" /locus_tag="STM1990" /db_xref="GeneID:1253511" CDS 2072966..2073886 /gene="yedA" /locus_tag="STM1990" /note="similar to E. coli putative transmembrane subunit (AAC75025.1); Blastp hit to AAC75025.1 (306 aa), 89% identity in aa 1 - 298" /codon_start=1 /transl_table=11 /product="drug/metabolite exporter YedA" /protein_id="NP_460941.1" /db_xref="GI:16765326" /db_xref="GeneID:1253511" /translation="MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRF LSAGMLLMAFLLLRGEKLPPLRQTINAALIGLLLLAVGNGLVTVAEHQNVPSGIAAVV VATVPLFTLCFSYFFGIKTRKLEWVGIAIGLAGIILLNSGGNLSGNPWGAILILIGSM SWAFGSVYGSRIALPVGMMAGAIEMLAAGVVLLCAAFLSGEKLATLPGLSGFMAVGYL ALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLGTGLGGERLSPVEWAALGVI VFAVVLVTLGKYLFPVKAVVTPCKTEDSRQ" gene complement(2073875..2074352) /gene="vsr" /locus_tag="STM1991" /db_xref="GeneID:1253512" CDS complement(2073875..2074345) /gene="vsr" /locus_tag="STM1991" /EC_number="3.1.-.-" /note="patch repair protein; similar to E. coli DNA mismatch endonuclease, patch repair protein (AAC75026.1); Blastp hit to AAC75026.1 (156 aa), 86% identity in aa 1 - 156" /codon_start=1 /transl_table=11 /product="very short patch repair endonuclease" /protein_id="NP_460942.1" /db_xref="GI:16765327" /db_xref="GeneID:1253512" /translation="MADVHDKATRSKNMRAIATRDTAIEKRLAGLLSAQGITFHTQDA TLPGKPDFVVNDYDCVIFTHGCFWHHHHCYLFKVPATRTAFWLEKIGKNVERDERDIQ RLQALGWRVLIVWECALRGRAKLSDAALAERLEEWICGGGASAQIDTQGIHLLA" gene complement(2074326..2075768) /gene="dcm" /locus_tag="STM1992" /db_xref="GeneID:1253513" CDS complement(2074326..2075756) /gene="dcm" /locus_tag="STM1992" /note="similar to E. coli DNA cytosine methylase (AAC75027.1); Blastp hit to AAC75027.1 (472 aa), 83% identity in aa 1 - 472" /codon_start=1 /transl_table=11 /product="DNA (cytosine-5-)-methyltransferase" /protein_id="NP_460943.1" /db_xref="GI:16765328" /db_xref="GeneID:1253513" /translation="MQENISVTHARNLIADDAGSELQAMLSQLLEIYDVKTLVAHLNG LGEQHWSPAIFKRVMMNAAWHRLSDNELTCLKTELPTPPAHHPHYAFRFIDLFAGIGG IRRGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIRDITLSHREGVSDDE AAEHIRQHIPQHDVLLAGFPCQPFSLAGVSKKNALGRAHGFACETQGTLFFDVVRIID ARRPALFVLENVKNLKSHDQGNTFRIIMQTLDELGYDVADAADNGPDDPKIIDGQHFL PQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWK YLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEILIDRGWDMAKGEVN FDDAGNQQHRPRRLTPRECARLMGFEAPQTYQFRIPVSDTQAYRQFGNSVVVPVFAAV AKLLEPKIHQAVTLRQRETVDGGRSR" regulatory complement(2074347..2074352) /regulatory_class="ribosome_binding_site" /gene="vsr" /locus_tag="STM1991" /note="putative RBS for vsr; RegulonDB:STMS1H002148" regulatory complement(2075763..2075768) /regulatory_class="ribosome_binding_site" /gene="dcm" /locus_tag="STM1992" /note="putative RBS for dcm; RegulonDB:STMS1H002149" gene complement(2075830..2076533) /gene="yedJ" /locus_tag="STM1993" /db_xref="GeneID:1253514" CDS complement(2075830..2076525) /gene="yedJ" /locus_tag="STM1993" /note="similar to E. coli orf, hypothetical protein (AAC75028.1); Blastp hit to AAC75028.1 (231 aa), 73% identity in aa 1 - 229" /codon_start=1 /transl_table=11 /product="phosphohydrolase" /protein_id="NP_460944.1" /db_xref="GI:16765329" /db_xref="GeneID:1253514" /translation="MDSGYWQSQFEDWLRHHHQEQDAAHDIFHFRRVWATAQTLGENS PVDWLVVLSACYFHDIVSLAKNHPQRHRSSILAAAETRRIFLRDFPDFPAEKLAGICH AIEAHSFSAKIAPTTPEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDADDPFAD RRPLNDKQFALDHFQTKLLKLPLTMQTERGKYLAQRNADFLVSYMAKLSAELKGDYET RDDAVIQMFATHQ" regulatory complement(2076528..2076533) /regulatory_class="ribosome_binding_site" /gene="yedJ" /locus_tag="STM1993" /note="putative RBS for yedJ; RegulonDB:STMS1H002150" gene complement(2076617..2076928) /locus_tag="STM1994" /db_xref="GeneID:1253515" CDS complement(2076617..2076916) /locus_tag="STM1994" /note="similar to E. coli orf, hypothetical protein (AAC75029.1); Blastp hit to AAC75029.1 (127 aa), 56% identity in aa 32 - 123" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460945.1" /db_xref="GI:16765330" /db_xref="GeneID:1253515" /translation="MSTREDNATRSMGGKLALWVFYTFCGYFIWAMARCVWLMSAIQT EPVLGPISTPGSATEKWLNALSLGVVWLILGSIAWYTRPRKNRAYPADTKPETRK" regulatory complement(2076923..2076928) /regulatory_class="ribosome_binding_site" /locus_tag="STM1994" /note="putative RBS for STM1994; RegulonDB:STMS1H002151" gene 2077561..2078762 /gene="ompS" /locus_tag="STM1995" /db_xref="GeneID:1253516" regulatory 2077561..2077566 /regulatory_class="ribosome_binding_site" /gene="ompS" /locus_tag="STM1995" /note="putative RBS for ompS; RegulonDB:STMS1H002152" CDS 2077566..2078762 /gene="ompS" /locus_tag="STM1995" /note="similar to E. coli putative outer membrane protein (AAC74459.1); Blastp hit to AAC74459.1 (377 aa), 71% identity in aa 1 - 236, 60% identity in aa 174 - 377" /codon_start=1 /transl_table=11 /product="putative porin" /protein_id="NP_460946.1" /db_xref="GI:16765331" /db_xref="GeneID:1253516" /translation="MNRKVLALLVPALLVAGAANAAEVYNKNGNKLDLYGKVDGLRYF SDNAGDDGDQSYARFGFKGETQINDMLTGYGQWEYNIKVNTTEGEGANSWTRLGFAGL KFGEYGSFDYGRNYGVIYDIEAWTDALPEFGGDTYTQTDVYMLGRTNGVATYRNTDFF GLVEGLNFALQYQGNNEDPGAGEGTANGSDADSGTRKLARENGDGFGMSTSYDFDFGL SLGAAYSSSDRTDNQVASGRGDGHHYYGNSYAGGETAEAWTVGVKYDAYNVYLAAMYA ETRNMTYYGGGDGGDGGIANKTQNFEVVAQYQFDFGLRPSIAYLQSKGKDLGGQDMDS RGNYRYTDKDLVKYVDVGMTYYFNKNMSTYVDYKINLLDEDDDFYANNGIATDDIVGV GLVYQF" gene complement(2079222..2079448) /gene="cspB" /locus_tag="STM1996" /db_xref="GeneID:1253517" CDS complement(2079222..2079434) /gene="cspB" /locus_tag="STM1996" /note="similar to E. coli cold shock-like protein (AAC74625.1); Blastp hit to AAC74625.1 (70 aa), 84% identity in aa 1 - 70" /codon_start=1 /transl_table=11 /product="putative cold-shock protein" /protein_id="NP_460947.1" /db_xref="GI:16765332" /db_xref="GeneID:1253517" /translation="MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRT LNENQEVEFSVEQGPKGPSAVNVVAL" regulatory complement(2079443..2079448) /regulatory_class="ribosome_binding_site" /gene="cspB" /locus_tag="STM1996" /note="putative RBS for cspB; RegulonDB:STMS1H002153" gene complement(2079889..2081171) /gene="umuC" /locus_tag="STM1997" /db_xref="GeneID:1253518" CDS complement(2079889..2081157) /gene="umuC" /locus_tag="STM1997" /note="component of DNA polymerase V with UmuD'; UMUC protein. (SW:UMUC_SALTY)" /codon_start=1 /transl_table=11 /product="DNA polymerase V subunit UmuC" /protein_id="NP_460948.1" /db_xref="GI:16765333" /db_xref="GeneID:1253518" /translation="MFALCDVNSFYASCETVFRPDLCGRPVVVLSNNDGCVIACSAEA KQLGIAPGEPYFKQKERFRRSGVVCFSSNYELYADMSNRVMTTLEEMVPRVEIYSIDE AFCDLTGVRNCRDLTDFGREIRATVLKRTHLTVGVGIAQTKTLAKLANHAAKKWQRQT DGVVDLSNIDRQRRLLALIPVEDVWGVGRRISKKLNALGIKTALDLSEQSTWIIRKHF NVVLERTVRELRGEPCLELEEFAPAKQEIVCSRSFGERVTDYEEMRQAVYSYAARAAE KLRGEHQYCRFISTFVKTSPFALNEPYYGNSAAVTLLTPTQDSRDIINAAVKCLDKIW RDGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRAGSAKLMEVLDHLNAKDGKGTLYFA GQGMSQQWAMKREMLSPRYTTRYSDLLRVK" gene complement(2081160..2081667) /gene="umuD" /locus_tag="STM1998" /db_xref="GeneID:1253519" CDS complement(2081160..2081579) /gene="umuD" /locus_tag="STM1998" /EC_number="3.4.21.-" /note="LexA homologs, RecA-mediated autopeptidases; UMUD protein. (SW:UMUD_SALTY)" /codon_start=1 /transl_table=11 /product="DNA polymerase V subunit UmuD" /protein_id="NP_460949.1" /db_xref="GI:16765334" /db_xref="GeneID:1253519" /translation="MEFFRPTELREIIPLPFFSYLVPCGFPSPAADYIEQRIDLNELL VSHPSSTYFVKASGDSMIEAGISDGDLLVVDSSRNADHGDIVIAAIEGEFTVKRLQLR PTVQLIPMNGAYRPIPVGSEDTLDIFGVVTFIIKAVS" regulatory complement(2081166..2081171) /regulatory_class="ribosome_binding_site" /gene="umuD" /locus_tag="STM1998" /note="putative RBS for umuC; RegulonDB:STMS1H002154" regulatory complement(2081586..2081591) /regulatory_class="ribosome_binding_site" /gene="umuD" /locus_tag="STM1998" /note="putative RBS for umuD; RegulonDB:STMS1H002155" regulatory complement(2081643..2081651) /regulatory_class="minus_10_signal" /gene="umuD" /locus_tag="STM1998" /note="putative -10_signal for umuD; RegulonDB:STMLTH004523" regulatory complement(2081659..2081667) /regulatory_class="minus_35_signal" /gene="umuD" /locus_tag="STM1998" /note="putative -35_signal for umuD; RegulonDB:STMLTH004523" gene complement(2081706..2081867) /locus_tag="STM1999" /db_xref="GeneID:1253520" CDS complement(2081706..2081867) /locus_tag="STM1999" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460950.1" /db_xref="GI:16765335" /db_xref="GeneID:1253520" /translation="MGAGQKINCCEGNALARGDNLRCGTVDAVQKIWPPGWLKYAHMT IQPENLQNP" gene complement(2082174..2082260) /gene="serU" /locus_tag="STM2000" /db_xref="GeneID:1253521" tRNA complement(2082174..2082260) /gene="serU" /locus_tag="STM2000" /product="tRNA-Ser" /db_xref="GeneID:1253521" gene 2082348..2083145 /gene="yeeI" /locus_tag="STM2001" /db_xref="GeneID:1253522" CDS 2082348..2083145 /gene="yeeI" /locus_tag="STM2001" /note="similar to E. coli orf, hypothetical protein (AAC75041.1); Blastp hit to AAC75041.1 (278 aa), 85% identity in aa 14 - 263" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460951.1" /db_xref="GI:16765336" /db_xref="GeneID:1253522" /translation="MIKWPWKAQEITQNEDWPWDDALAIPLLVNLTAQEQARLIALAE RFLQQKRLVALQGFELDSLKSARIALIFCLPILELGIEWLDGFHEVLIYPAPFVVDDE WEDDIGLVHSQRVVQSGQSWQQGPIILNWLDIQDSFDASGFNLIIHEVAHKLDMRNGD RASGIPFIPLRDVAGWEHDLHAAMNNIQDEIDLVGESAASIDAYAATDPAECFAVLSE YFFSAPELFAPRFPALWQRFCQFYRQDPSQRLRVSAAEGDYGEESEH" gene 2083247..2083319 /gene="asnT" /locus_tag="STM2002" /db_xref="GeneID:1253523" tRNA 2083247..2083319 /gene="asnT" /locus_tag="STM2002" /product="tRNA-Asn" /db_xref="GeneID:1253523" gene 2083489..2083807 /locus_tag="STM2003" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1253524" gene 2084217..2084289 /gene="asnT" /locus_tag="STM2004" /db_xref="GeneID:1253525" tRNA 2084217..2084289 /gene="asnT" /locus_tag="STM2004" /product="tRNA-Asn" /db_xref="GeneID:1253525" gene 2084449..2084928 /locus_tag="STM2005" /db_xref="GeneID:1253526" regulatory 2084449..2084454 /regulatory_class="ribosome_binding_site" /locus_tag="STM2005" /note="putative RBS for STM2005; RegulonDB:STMS1H002159" CDS 2084455..2084928 /locus_tag="STM2005" /codon_start=1 /transl_table=11 /product="peptidase" /protein_id="NP_460952.1" /db_xref="GI:16765337" /db_xref="GeneID:1253526" /translation="MALTDTAGGTQTDPGTGKPSENPPAAPNKPTPPKEETPPGAPEK YAFTAPEGQELDTSALAQFEPVARELNLTQEQAQKLVDVYPKVLAGVQQQQAESWQKQ TEDWAAAVKADKDIGGDKLASNLGAAQRAIDTFGTKELKEYLDGTCARSLVNAAP" gene 2085395..2086101 /locus_tag="STM2006" /db_xref="GeneID:2673718" regulatory 2085395..2085400 /regulatory_class="ribosome_binding_site" /locus_tag="STM2006" /note="putative RBS for STM2006; RegulonDB:STMS1H002160" CDS 2085403..2086101 /locus_tag="STM2006" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_448412.1" /db_xref="GI:1109557670" /db_xref="GeneID:2673718" /translation="MGKLGGEMKALAKHCGGSHKTVNDCIHIVQRFDHHLRALNVHIQ RVAQIKVRHIESYIHERLAQGIGKRTLQNEMASLRAVLQQAGRKQVAEHEWLTNKSLG LAGASRSGTRQAITPEHYHHVLETARMKAPGLAAALELARLMGLRSQEAVQSVQWIWG MGTGVGGMWRRCMGKFDSWLRASSGWSRLPPFTVSERLGGGGKYQAALPSPLQSKPES DRTNVEINERTCPE" gene 2086918..2088612 /locus_tag="STM2007" /db_xref="GeneID:1253528" CDS 2086918..2088612 /locus_tag="STM2007" /note="similar to E. coli orf, hypothetical protein (AAC73745.1); Blastp hit to AAC73745.1 (327 aa), 32% identity in aa 130 - 322, 32% identity in aa 60 - 242, 32% identity in aa 17 - 168, 33% identity in aa 59 - 204, 23-1073758628dentity in aa 23 - 106" /codon_start=1 /transl_table=11 /product="putative TPR repeat protein" /protein_id="NP_460954.1" /db_xref="GI:16765339" /db_xref="GeneID:1253528" /translation="MPLPYDKEKKLWKVTGWYLESSEETGEVMQSKQIAFEGYTNEEN FANRQRVSVFKSFYESGNLKSIYHYNAQNKRDGKAETYFDEKDKIAETLTFKDGQPEG EYIVYHENGAVESKRYFAQGKIKDGECPHFYDNGVLKQKHSYLNQKLEGPAFEYFPDG KIKGKYSYSKGTIVGTSTEYYSTGKIRGVYHRNNQGENDGTFEQYSEEGKLLSKATYK NGKQLSAQSWYENGHPKEESSFDSEGRKHGAVKEWFSNGKPASSKMYKHDVLDGDFEK WYENGHRESVYPYKNGMLNGDAKHWNEQGKLTYTTEYKDDKKQGADRRWSERTGKLVE EVMFANDERNGLKREFNDRTGKVLSALPYVDGDKEGTEEAYDEDGIKYIRCYHNDEEL SELYAPTDVTNKAKQGDSTAQYHLGKYEFECTNYDAAMKWLTQSAEQNHPGALLFLAY AYNDGDGVAQDSKKYLSYLFKAAELGESDAQLEVGYLNLIGEGMPKNLPEAYKWIKKS ADQGNAQAHYNLGLMYRNGDGVEKDLNKAKLHLTAAVKGGVKPALAALKELTPQTK" gene 2088663..2090399 /locus_tag="STM2008" /db_xref="GeneID:1253529" regulatory 2088663..2088668 /regulatory_class="ribosome_binding_site" /locus_tag="STM2008" /note="putative RBS for STM2008; RegulonDB:STMS1H002161" CDS 2088669..2090399 /locus_tag="STM2008" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460955.1" /db_xref="GI:16765340" /db_xref="GeneID:1253529" /translation="MKFKFATLLTAATVFYSYQSVAQSQQSPDVWSVVEQKLQNAVPL NENTTFKSQAAWFELHRELFMYGPMSRADALLKKLDTQSNDAKFSLNHEASWIAENNS PDAAMVFLSKIGLDKPSSITAYESYVDGWVNRKQPEKALALLSKNADARNFYLATVLE SCHSEPDKTAAIYNENYADKIVVPYTQLKMLLIIAKQYHAKGDTAKALVYADSALKMF DTAIAQQPSAEAYRYQEYLDLMEIYYATGNKEKAMALSARLRKATGNKGSYFQYSLPG LLSFYKKNELTQNYQETLSTCVTQVDKIFNFAPSPRIEMELIDLLSKLDDVALMNKRI DLLMSAPEYTCYDDRYCYEYKIKALKNLFQHKQNAVAEKHIATLSAEAQTLTFAEWED ATNEIGEVLKEIGHPEAAQKLAVSAEAIYLSQAKAWPDEDMSRSFQRLAELYGYGNDT VNAKRVLHQHVPSLEEEAMIDHYMNAKQWSQARELMINADRVDNKNLMLLRQICSENT PECQEHITFTLKKLTTQASITRQDDTGNQQLYQIGNIFHRLGIIPGAEQQALIQALYN KAAEPKKATP" gene complement(2091304..2092770) /gene="amn" /locus_tag="STM2009" /db_xref="GeneID:1253530" CDS complement(2091304..2092758) /gene="amn" /locus_tag="STM2009" /EC_number="3.2.2.4" /note="similar to E. coli AMP nucleosidase (AAC75046.1); Blastp hit to AAC75046.1 (484 aa), 90% identity in aa 1 - 484" /codon_start=1 /transl_table=11 /product="AMP nucleosidase" /protein_id="NP_460956.1" /db_xref="GI:16765341" /db_xref="GeneID:1253530" /translation="MENKGTNLTPEQALDRLEELYEQSVNALREAIADYVDNGTLPDP HARLNGLFVYPSLSVSWDGATPNPPKTRAFGRFTHPGCYTTTVTRPALFRAYLLEQLN LVYHDYGAHIAVEASHHEIPYPYVIDGSALTLDRSMSAGLTRHFPTTELAQIGDETAD GLFHPGEFYPLSHFDARRVDFSLARLRHYTGTPVEHFQPFVLFTNYTRYVDEFVRWGC SQILDPDSPYIALSCAGGIWITAETEAPEEAISDLAWKKHQMPAWHLVTADGQGITLV NIGVGPSNAKTICDHLAVLRPDVWLMIGHCGGLRESQAIGDYVLAHAYLRDDHVLDAV LPPDIPIPSIAEVQRALYDATKAVSGMPGEEVKQRLRTGTVVTTDDRNWELRYSASAL RFNLSRAVAIDMESATIAAQGYRFRVPYGTLLCVSDKPLHGEIKLPGQANRFYEGAIS EHLQIGIRAIDLLRAEGDRLHSRKLRTFNEPPFR" regulatory complement(2092765..2092770) /regulatory_class="ribosome_binding_site" /gene="amn" /locus_tag="STM2009" /note="putative RBS for amn; RegulonDB:STMS1H002162" gene 2092798..2092965 /locus_tag="STM2010" /db_xref="GeneID:1253531" regulatory 2092798..2092803 /regulatory_class="ribosome_binding_site" /locus_tag="STM2010" /note="putative RBS for STM2010; RegulonDB:STMS1H002163" CDS 2092804..2092965 /locus_tag="STM2010" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_448416.1" /db_xref="GI:1109557671" /db_xref="GeneID:1253531" /translation="MTAKEETKGVSVRVATVNMNPLKRKENYLSATIIAQKEGYWYSH LLSSLQLVI" gene complement(2092954..2093284) /locus_tag="STM2011" /db_xref="GeneID:1253532" CDS complement(2092954..2093280) /locus_tag="STM2011" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460958.1" /db_xref="GI:16765343" /db_xref="GeneID:1253532" /translation="MVDNIEQQVYELVRPYAGTYLFNIKQVELTPEIDLDTDLSIDEL EAEDLMNKFFEELNVERGNFRIETYFPNHPFSWHPFKKTEPVPVPDFTISMLIESAKA GKWLYD" regulatory complement(2093279..2093284) /regulatory_class="ribosome_binding_site" /locus_tag="STM2011" /note="putative RBS for STM2011; RegulonDB:STMS1H002164" gene complement(2094162..2094234) /gene="asnW" /locus_tag="STM2012" /db_xref="GeneID:1253533" tRNA complement(2094162..2094234) /gene="asnW" /locus_tag="STM2012" /product="tRNA-Asn" /db_xref="GeneID:1253533" gene complement(2094374..2095831) /gene="yeeO" /locus_tag="STM2013" /db_xref="GeneID:1253534" CDS complement(2094374..2095831) /gene="yeeO" /locus_tag="STM2013" /note="similar to E. coli orf, hypothetical protein (AAC75048.1); Blastp hit to AAC75048.1 (547 aa), 82% identity in aa 53 - 533" /codon_start=1 /transl_table=11 /product="FMN/FAD transporter" /protein_id="NP_460959.1" /db_xref="GI:16765344" /db_xref="GeneID:1253534" /translation="MWFQLSSLRSILNVSTALRQAVVRTPWYAKRKSYKVLFWREITP LAIPIFLENTCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVV VAFSLGKRDRRRARAAARQSLVIMTLFAVVLAVVIHYFGSEIINIVAGEATPEVKGLA LTYLELTVLSYPAAAIALIGSGALRGAGNTKIPLMINGGMNILNIIISSILIYGAFSW QGLGFAGAGLGLTISRYIGAVAIIWVLMIGFNPALRIPLKSYLKPLNFGIIWEVMGIG IPASIESVLFNGGKLLTQMFVAGMGTNVIAGNFIAFSVAALINLPGNALGSASTIITG KRLGTGQIGQAERQLRHVFWMSTIVLTAIAWGTAPFAGLFASFYTQEQDVKEVVKVLL WLNAAFMPIWAAAWVLPSGFKGARDVRFAMWVSMLGMWGCRVVAGYTLGIVLGMGVVG VWLGMFLDWAVRGALFYWRLISGRWLWRYPRVKRE" gene 2095992..2096064 /gene="asnU" /locus_tag="STM2014" /db_xref="GeneID:1253535" tRNA 2095992..2096064 /gene="asnU" /locus_tag="STM2014" /product="tRNA-Asn" /db_xref="GeneID:1253535" gene complement(2096293..2097236) /gene="erfK" /locus_tag="STM2015" /db_xref="GeneID:1253536" CDS complement(2096293..2097222) /gene="erfK" /locus_tag="STM2015" /note="protein ERKF/SRFK precursor. (SW:ERFK_SALTY)" /codon_start=1 /transl_table=11 /product="L,D-transpeptidase" /protein_id="NP_460960.1" /db_xref="GI:16765345" /db_xref="GeneID:1253536" /translation="MRRITPFFPFFVLLVSHFSLAISYPLPPEGSRLVGQPVTIAVPQ NNTQPLESFAARYGQGLSNMLEANPGVDVFLPQSGSTLVVPQQLILPDTVREGIVVNV AEMRLYYYPAGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVWVPTANTRREYAK EGKTLPAMVPAGPDNPMGLYAIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKYL FDHVPVGTRVQIIDRPVKFSVEPDGSRWLEVHEPLSRNRAEFESDKKVPLPVTPVLRT FIKGDDVDTSRVNEVLERRSGMPVNISAGRPGL" regulatory complement(2097231..2097236) /regulatory_class="ribosome_binding_site" /gene="erfK" /locus_tag="STM2015" /note="putative RBS for erfK; RegulonDB:STMS1H002166" gene complement(2097300..2098383) /gene="cobT" /locus_tag="STM2016" /db_xref="GeneID:1253537" CDS complement(2097300..2098370) /gene="cobT" /locus_tag="STM2016" /EC_number="2.4.2.21" /note="nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase. (SW:COBT_SALTY)" /codon_start=1 /transl_table=11 /product="nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase" /protein_id="NP_460961.1" /db_xref="GI:16765346" /db_xref="GeneID:1253537" /translation="MQTLHALLRDIPAPDAEAMARAQQHIDGLLKPPGSLGRLETLAV QLAGMPGLNGTPQVGEKAVLVMCADHGVWDEGVAVSPKIVTAIQAANMTRGTTGVCVL AAQAGAKVHVIDVGIDAEPIPGVVNMRVARGCGNIAVGPAMSRLQAEALLLEVSRYTC DLAQRGVTLFGVGELGMANTTPAAAMVSVFTGSDAKEVVGIGANLPPSRIDNKVDVVR RAIAINQPNPRDGIDVLSKVGGFDLVGMTGVMLGAARCGLPVLLDGFLSYSAALAACQ IAPAVRPYLIPSHFSAEKGARIALAHLSMEPYLHMAMRLGEGSGAALAMPIVEAACAM FHNMGELAASNIVLPEGNANAT" regulatory complement(2098378..2098383) /regulatory_class="ribosome_binding_site" /gene="cobT" /locus_tag="STM2016" /note="putative RBS for cobT; RegulonDB:STMS1H002167" gene complement(2098397..2099156) /gene="cobS" /locus_tag="STM2017" /db_xref="GeneID:1253538" CDS complement(2098397..2099140) /gene="cobS" /locus_tag="STM2017" /note="cobalamin [5'-phosphate] synthase. (SW:COBS_SALTY)" /codon_start=1 /transl_table=11 /product="adenosylcobinamide-GDP ribazoletransferase" /protein_id="NP_460962.1" /db_xref="GI:16765347" /db_xref="GeneID:1253538" /translation="MSKLFWAMLAFISRLPVPSRWSQGLDFEQYSRGIVMFPFIGLIL GGVSGLIFILLQPWCGIPLAALFCILALALLTGGFHLDGLADTCDGIFSARRRERMLE IMRDSRLGTHGGLALIFVLLAKILVVSELALRGTPMLAALAAACAAGRGSAVLLMYRH RYAREEGLGNVFIGKVSGRQTCITLGLAVIVATVLLPGMQGLAAMVVTCAAIFILGQL LKRTLGGQTGDTLGAAIELGELIFLLALL" gene complement(2099137..2099693) /gene="cobU" /locus_tag="STM2018" /db_xref="GeneID:1253539" CDS complement(2099137..2099682) /gene="cobU" /locus_tag="STM2018" /note="(SW:COBU_SALTY)" /codon_start=1 /transl_table=11 /product="bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase" /protein_id="NP_460963.1" /db_xref="GI:16765348" /db_xref="GeneID:1253539" /translation="MMILVTGGARSGKSRHAEALIGDAPQVLYIATSQILDDEMAARI QHHKDGRPAHWRTAECWRHLDTLITADLAPDDAILLECITTMVTNLLFALGGENDPEQ WDYAAMERAIDDEIQILIAACQRCPAKVVLVTNEVGMGIVPENRLARHFRDIAGRVNQ RLAAAADEVWLVVSGIGVKIK" regulatory complement(2099151..2099156) /regulatory_class="ribosome_binding_site" /gene="cobU" /locus_tag="STM2018" /note="putative RBS for cobS; RegulonDB:STMS1H002168" gene complement(2099679..2101205) /gene="cbiP" /locus_tag="STM2019" /db_xref="GeneID:1253540" CDS complement(2099679..2101199) /gene="cbiP" /locus_tag="STM2019" /note="cobyric acid synthase. (SW:CBIP_SALTY)" /codon_start=1 /transl_table=11 /product="synthesis of vitamin B12 adenosyl cobalamide precursor" /protein_id="NP_460964.1" /db_xref="GI:16765349" /db_xref="GeneID:1253540" /translation="MTQAVMLQGTASDVGKSVLAAGLCRIFYQDGLRTAPFKSQNMAL NSGITPDGKEMGRAQIFQAEAAGITPDVRMNPVLLKPTSDRQAQVVLMGKVATNMDAV SYHDYKPRLREQILAVYNSLAQEYDVIVLEGAGSPAEINLRDRDIVNMGMAEMAQCPV ILVADIDRGGVFAAIYGTLALLHKQERDRVKGVIINKFRGDVALLYSGIEQIESLTGV PVLGVMPWLDVDLEDEDGVALQNDKYRGNAPRDITIAIVQLPHISNFTDFNALAAQPD VRIRYIRRPEALTDVDLVILPGSKNTLSDLAWLRESGMADAVLQTHRQGVPVMGICGG YQMLGDTIVDEVESGLGTQPGLGLLNTITRFAQDKTTTQVNATMSGELPGWLAAAAGL PVRGYEIHMGETVLQEGCCTAMTLQKNGCSVADGAVTADGLAFGTYLHGLFDSDAFTR AVVNGLRARKGLAPWETTFCYADHKARQFDLLAEAMRQHIDIDKIYTIMQQHQEPV" regulatory complement(2099688..2099693) /regulatory_class="ribosome_binding_site" /gene="cobU" /locus_tag="STM2018" /note="putative RBS for cobU; RegulonDB:STMS1H002169" gene complement(2101196..2102017) /gene="cbiO" /locus_tag="STM2020" /db_xref="GeneID:1253541" CDS complement(2101196..2102011) /gene="cbiO" /locus_tag="STM2020" /note="cobalt transport atp-binding protein CBIO. (SW:CBIO_SALTY)" /codon_start=1 /transl_table=11 /product="energy-coupling factor ABC transporter ATP-binding protein" /protein_id="NP_460965.1" /db_xref="GI:16765350" /db_xref="GeneID:1253541" /translation="MLATSDLWFRYQNEPVLKGLNMDFSLSPVTGLVGANGCGKSTLF MNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFS LRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL DEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG APGEVFACTEAMEHAGLTQPWLVKLHTQLGLPLCKTETEFFHRMQKCAFREAS" regulatory complement(2101200..2101205) /regulatory_class="ribosome_binding_site" /gene="cbiO" /locus_tag="STM2020" /note="putative RBS for cbiP; RegulonDB:STMS1H002170" regulatory complement(2102012..2102017) /regulatory_class="ribosome_binding_site" /gene="cbiO" /locus_tag="STM2020" /note="putative RBS for cbiO; RegulonDB:STMS1H002171" gene complement(2102020..2102703) /gene="cboQ" /locus_tag="STM2021" /db_xref="GeneID:1253542" CDS complement(2102020..2102697) /gene="cboQ" /locus_tag="STM2021" /note="cobalt transport protein CBIQ. (SW:CBIQ_SALTY)" /codon_start=1 /transl_table=11 /product="cobalt ECF transporter T component CbiQ" /protein_id="NP_460966.1" /db_xref="GI:16765351" /db_xref="GeneID:1253542" /translation="MTGLDRLSYQSRWAHVAPQRKFLLWLAMMILAFVLPPVGQGIEL LIIAGLSCWLLRISLWRWCRWMAIPFGFLLVGVITIIFSISREPQMLLAGISVGPYWI GITRAGVVTANETFWRSLTALSATLWLVMNLPFPQLISLLKRAHIPRLLTEQILLTWR FLFILLDEAVAIRRAQTLRFGYCSLPNGYRSLAMLAGLLFTRVLMRYQQMTTTLDIKL YQGDFHL" gene complement(2102684..2102971) /gene="cbiN" /locus_tag="STM2022" /db_xref="GeneID:1253543" CDS complement(2102684..2102965) /gene="cbiN" /locus_tag="STM2022" /note="cobalt transport protein CBIN. (SW:CBIN_SALTY)" /codon_start=1 /transl_table=11 /product="cobalt ABC transporter substrate-binding protein CbiN" /protein_id="NP_460967.1" /db_xref="GI:16765352" /db_xref="GeneID:1253543" /translation="MKKTLMLLAMVVALVILPFFINHGGEYGGSDGEAESQIQAIAPQ YKPWFQPLYEPASGEIESLLFTLQGSLGAAVIFYILGYCKGKQRRDDRA" regulatory complement(2102698..2102703) /regulatory_class="ribosome_binding_site" /gene="cbiN" /locus_tag="STM2022" /note="putative RBS for cboQ; RegulonDB:STMS1H002172" regulatory complement(2102966..2102971) /regulatory_class="ribosome_binding_site" /gene="cbiN" /locus_tag="STM2022" /note="putative RBS for cbiN; RegulonDB:STMS1H002173" gene complement(2102967..2103709) /gene="cbiM" /locus_tag="STM2023" /db_xref="GeneID:1253544" CDS complement(2102967..2103704) /gene="cbiM" /locus_tag="STM2023" /note="CBIM protein. (SW:CBIM_SALTY)" /codon_start=1 /transl_table=11 /product="cobalamin biosynthesis protein CbiM" /protein_id="NP_460968.3" /db_xref="GI:1109557672" /db_xref="GeneID:1253544" /translation="MKLEQQLRQLSFSGLAAALLLMVVPQQAFAMHIMEGFLPPVWAL AWWLLFLPCLWYGLVRLRRIVQEDNHQKVLLALCGAFIFVLSALKIPSVTGSCSHPTG VGLAVILFGPGVVAILGAVVLLFQALLLAHGGLTTLGANGMSMAVIGPVVGYLVWKMA CRAGLRRDVAVFLCAMLADLATYFVTSVQLGVAFPDPHAGATGSVVKFMGIFCLTQIP VAIAEGLLTVMIYDQLTKRQVITVQGH" gene complement(2103701..2104422) /gene="cbiL" /locus_tag="STM2024" /db_xref="GeneID:1253545" CDS complement(2103701..2104414) /gene="cbiL" /locus_tag="STM2024" /EC_number="2.1.1.130" /note="precorrin-2 C20-methyltransferase. (SW:CBIL_SALTY)" /codon_start=1 /transl_table=11 /product="precorrin-2 C(20)-methyltransferase" /protein_id="NP_460969.1" /db_xref="GI:16765354" /db_xref="GeneID:1253545" /translation="MNGKLYALSTGPGAPDLITVRAARILGSLDILYAPAGRKGGDSL ALSIVRDYLGEQTEVRCCHFPMSADGAEKEAVWNEVAAALTAEVEAGKQVGFITLGDA MLFSTWIFLLQRIGCPEWLEIVPGVTSFAAIAARAKMPLAIERQSLAVISCTAPEAEI AQALQQHDSLVLMKVYGRFARIKALLAQAGLLECALMMSEATLPGEQCWRHLHEVNDD RPLPYFSTILVNKQWEYAE" regulatory complement(2103704..2103709) /regulatory_class="ribosome_binding_site" /gene="cbiL" /locus_tag="STM2024" /note="putative RBS for cbiM; RegulonDB:STMS1H002174" gene complement(2104411..2105212) /gene="cbiK" /locus_tag="STM2025" /db_xref="GeneID:1253546" CDS complement(2104411..2105205) /gene="cbiK" /locus_tag="STM2025" /note="cobalt chelatase. (SW:CBIK_SALTY)" /codon_start=1 /transl_table=11 /product="sirohydrochlorin cobaltochelatase" /protein_id="NP_460970.1" /db_xref="GI:16765355" /db_xref="GeneID:1253546" /translation="MKKALLVVSFGTSYHDTCEKNIVACERDLAASCPDRDLFRAFTS GMIIRKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQSLHIINGDEYEKIVREVQLLRP LFTRLTLGVPLLSSHNDYVQLMQALRQQMPSLRQTEKVVFMGHGASHHAFAAYACLDH MMTAQRFPARVGAVESYPEVDILIDSLRDEGVTGVHLMPLMLVAGDHAINDMASDDGD SWKMRFNAAGIPATPWLSGLGENPAIRAMFVAHLHQALNMAVEEAA" regulatory complement(2104417..2104422) /regulatory_class="ribosome_binding_site" /gene="cbiL" /locus_tag="STM2024" /note="putative RBS for cbiL; RegulonDB:STMS1H002175" regulatory complement(2105207..2105212) /regulatory_class="ribosome_binding_site" /gene="cbiK" /locus_tag="STM2025" /note="putative RBS for cbiK; RegulonDB:STMS1H002176" gene complement(2105208..2106005) /gene="cbiJ" /locus_tag="STM2026" /db_xref="GeneID:1253547" CDS complement(2105208..2105999) /gene="cbiJ" /locus_tag="STM2026" /EC_number="1.3.1.54" /note="precorrin-6x reductase. (SW:CBIJ_SALTY)" /codon_start=1 /transl_table=11 /product="cobalt-precorrin-6A reductase" /protein_id="NP_460971.1" /db_xref="GI:16765356" /db_xref="GeneID:1253547" /translation="MNEGDVLVVGGTSDARALCRQLDAANVAYTLSVATPAGKALAGD IKGQVRCGRLEYGQMVAWLKENRTRWVIDASHPYAEMVSHNLLRACETAGVLLSRYQR PEQLSNLTHPLLYTARSIADACEIARRFGPRVLLTTGSKDLAVWRAGLAEKTLLARVL PVAEVIQRCSELGFGVGEIFALCGPFSADFNAAFYHQCRADVVITKASGAEGGYQEKV QPCLDAGIPCIVIARPTPLVTGDELLESQAAFAQRLSRWLAAAKE" gene complement(2105996..2106728) /gene="cbiH" /locus_tag="STM2027" /db_xref="GeneID:1253548" CDS complement(2105996..2106721) /gene="cbiH" /locus_tag="STM2027" /EC_number="2.1.1.131" /note="precorrin-3B C17-methyltransferase. (SW:CBIH_SALTY)" /codon_start=1 /transl_table=11 /product="precorrin-3B C(17)-methyltransferase" /protein_id="NP_460972.1" /db_xref="GI:16765357" /db_xref="GeneID:1253548" /translation="MLSVIGIGPGSQAMMTMEAIEALQAAEIVVGYKTYTHLVKAFTG DKQVIKTGMCREIERCQAAIELAQAGHNVALISSGDAGIYGMAGLVLELVSKQKLDVE VRLIPGMTASIAAASLLGAPLMHDFCHISLSDLLTPWPVIEKRIVAAGEADFVICFYN PRSRGREGHLARAFDLLAASKSAQTPVGVVKSAGRKKEEKWLTTLGDMDFEPVDMTSL VIVGNKTTYVQDGLMITPRGYTL" regulatory complement(2106000..2106005) /regulatory_class="ribosome_binding_site" /gene="cbiH" /locus_tag="STM2027" /note="putative RBS for cbiJ; RegulonDB:STMS1H002177" gene complement(2106721..2107781) /gene="cbiG" /locus_tag="STM2028" /db_xref="GeneID:1253549" CDS complement(2106721..2107776) /gene="cbiG" /locus_tag="STM2028" /note="CBIG protein. (SW:CBIG_SALTY)" /codon_start=1 /transl_table=11 /product="cobalamin biosynthesis protein CbiG" /protein_id="NP_460973.1" /db_xref="GI:16765358" /db_xref="GeneID:1253549" /translation="MNTVKPESIALFCLTPGGVALAKRLAAMLPLTCFTSEKLREEGF IPFDGGFANTARQAFTTYTALIFIGATGIAVRVLAPLVNDKFSDPAVVVIDERGQHVI SLLSGHAGGANALTRYLAGMLGADPVITTATDVNEMSALDTLAFQLNARMSDLRTAVK TVNQMLVSHQRVGLWWDAELTEEIGQCDIRGFIPVDDLQRLPELDALICVSLRNDLPE LPVPHWKLVPQRVVAGIGCRRDTPFPLLATLLARQLEAQKLDPLALKAIGSVTLKKGE PGLIQLASCCRVPFKTFTAEALREFEHHFPGSGFVRKTVGVGSVSGPAAWLLSQGQLL GETLREQGVTITLGVAH" regulatory complement(2106723..2106728) /regulatory_class="ribosome_binding_site" /gene="cbiH" /locus_tag="STM2027" /note="putative RBS for cbiH; RegulonDB:STMS1H002178" gene complement(2107757..2108537) /gene="cbiF" /locus_tag="STM2029" /db_xref="GeneID:1253550" CDS complement(2107757..2108530) /gene="cbiF" /locus_tag="STM2029" /EC_number="2.1.1.133" /note="precorrin-4 C11-methyltransferase. (SW:CBIF_SALTY)" /codon_start=1 /transl_table=11 /product="precorrin-4 C(11)-methyltransferase" /protein_id="NP_460974.1" /db_xref="GI:16765359" /db_xref="GeneID:1253550" /translation="MSETFDPRCVWFVGAGPGDRELITLKGYRLLQQAQVVIYAGSLI NTELLDYCPAQAERYDSAELHLEQIIELMAAGVKAGKTVVRLQTGDVSLYGSVREQGE ELTRRGIDWQVVPGVSAFLGAAAELGVEYTVPEVSQSLIITRLEGRTPVPAREQLEAF ASHQTSMAIYLSVQRIHRVAERLIAGGYPATTPVAVIYKATWPESQTVRGTLADISDK VRDAGIRKTALILVGNFLGKEYHYSRLYAADFSHEYRKA" regulatory complement(2107776..2107781) /regulatory_class="ribosome_binding_site" /gene="cbiF" /locus_tag="STM2029" /note="putative RBS for cbiG; RegulonDB:STMS1H002179" gene complement(2108514..2109098) /gene="cbiT" /locus_tag="STM2030" /db_xref="GeneID:1253551" CDS complement(2108514..2109092) /gene="cbiT" /locus_tag="STM2030" /EC_number="1.-.-.-" /note="precorrin-8W decarboxylase. (SW:CBIT_SALTY)" /codon_start=1 /transl_table=11 /product="precorrin-6Y C5,15-methyltransferase (decarboxylating) subunit CbiT" /protein_id="NP_460975.1" /db_xref="GI:16765360" /db_xref="GeneID:1253551" /translation="MKDELFLRGENVPMTKEAVRALALSKLELHRASHLIDVGAGTGS VSIEAALQFPSLQVTAIERNPAALRLLDENRQRFACGNIDILPGEAPMTITGKADAVF MGGSGGHLTALIDWAMGHLHPGGRLVMTFILQENLHSALAHLAHIGACRMDCVQLQLS SLTPLGAGHYFKPNNPVFVIACQKEENHVRDI" regulatory complement(2108532..2108537) /regulatory_class="ribosome_binding_site" /gene="cbiT" /locus_tag="STM2030" /note="putative RBS for cbiF; RegulonDB:STMS1H002180" gene complement(2109082..2109694) /gene="cbiE" /locus_tag="STM2031" /db_xref="GeneID:1253552" CDS complement(2109082..2109687) /gene="cbiE" /locus_tag="STM2031" /EC_number="2.1.1.132" /note="precorrin-6Y C5,15-methyltransferase [decarboxylating]. (SW:CBIE_SALTY)" /codon_start=1 /transl_table=11 /product="precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE" /protein_id="NP_460976.1" /db_xref="GI:16765361" /db_xref="GeneID:1253552" /translation="MLTVVGMGPAGRHLMTPAALEAIDHADALAGGKRHLAQFPAFGG ERFTLGADIGALLSWIAARRDKGIVVLASGDPLFYGIGTRLVAHFGIEQVRIIPGISA VQYLCAQAGIDMNDMWLTSSHGRCVSFEQLANHRKVAMVTDARCGPREIARELVARGK GHRLMVIGENLAMENERIHWLPVSAVNADYEMNAVVILDER" regulatory complement(2109093..2109098) /regulatory_class="ribosome_binding_site" /gene="cbiT" /locus_tag="STM2030" /note="putative RBS for cbiT; RegulonDB:STMS1H002181" gene complement(2109681..2110825) /gene="cbiD" /locus_tag="STM2032" /db_xref="GeneID:1253553" CDS complement(2109681..2110820) /gene="cbiD" /locus_tag="STM2032" /note="CBID protein. (SW:CBID_SALTY)" /codon_start=1 /transl_table=11 /product="cobalt-precorrin-5B (C(1))-methyltransferase" /protein_id="NP_460977.1" /db_xref="GI:16765362" /db_xref="GeneID:1253553" /translation="MSELSFDAPVWHHGKALRKGYTTGSCATAAAKVAALMVLRQHLI HQVSIVTPSGVTLCLNVESPHIEGQQAIAAIRKDGGDDVDATHGMLIFARVTLNDSGE ITLTGGEGIGTVTRKGIGLPLGSAAINRTPRHTIESAVREAIGPARGADVEIFAPEGE ARAQKTYNSRLGILGGISIIGTTGIVTPMSEESWKRSLSLELEIKRASGLTRVILVPG NHGERFVREQMGVDTQAVVTMSNFVGYMIEEAVRLGFCQIVLVGHPGKLIKIAAGIFH THSHIADARMETLVAHLALLGAPLELLTLVSDCDTTEAAMEHIEAYGFGHIYNHLARR ICLRVMQMLRFTKTPPVCDAILFSFDNHILGSNRPVDEIAKELQC" regulatory complement(2109689..2109694) /regulatory_class="ribosome_binding_site" /gene="cbiE" /locus_tag="STM2031" /note="putative RBS for cbiE; RegulonDB:STMS1H002182" gene complement(2110820..2111459) /gene="cbiC" /locus_tag="STM2033" /db_xref="GeneID:1253554" CDS complement(2110820..2111452) /gene="cbiC" /locus_tag="STM2033" /EC_number="5.4.99.61" /note="precorrin-8x methylmutase. (SW:CBIC_SALTY)" /codon_start=1 /transl_table=11 /product="precorrin-8X methylmutase" /protein_id="NP_460978.1" /db_xref="GI:16765363" /db_xref="GeneID:1253554" /translation="MHYIQQPQTIEANSFTIISDIIRETRPDYRFASPLHEAIIKRVI HTTADFDWLDILWFSADALEQLCDALRHPCIIYTDTTMALSGINKRLLATFGGECRCY ISDPRVVRAAQTQGITRSMAAVDIAIAEEEKNKLFVFGNAPTALFRLLEHNVTVSGVV GVPVGFVGAAESKEALTHSHFPAVAALGRKGGSNVAAAIVNALLYHLREA" regulatory complement(2110820..2110825) /regulatory_class="ribosome_binding_site" /gene="cbiC" /locus_tag="STM2033" /note="putative RBS for cbiD; RegulonDB:STMS1H002183" regulatory complement(2111454..2111459) /regulatory_class="ribosome_binding_site" /gene="cbiC" /locus_tag="STM2033" /note="putative RBS for cbiC; RegulonDB:STMS1H002184" gene complement(2111463..2112428) /gene="cibB" /locus_tag="STM2034" /db_xref="GeneID:1253555" CDS complement(2111463..2112422) /gene="cibB" /locus_tag="STM2034" /note="CBIB protein. (SW:CBIB_SALTY)" /codon_start=1 /transl_table=11 /product="adenosylcobinamide-phosphate synthase" /protein_id="NP_460979.1" /db_xref="GI:16765364" /db_xref="GeneID:1253555" /translation="MTILAWCIAWVLDFIIGDPQHWPHPVRWIGRLITFVQRIVRRYC PGDKALRIGGGVMWVVVVGATWGVAWGVLALAQRIHPWFGWSVEVWMIFTTLAGRSLA HAAQEVERPLRKNDLAESRIKLSWIVGRDTSQLQPAQINRAVVETVAENTVDGIIAPL FFLFLGGAPLAMAYKAVNTLDSMVGYKHEKYRAIGMVSARMDDVANYLPARLSWLLLG IAAGLCRLSGWRALRIGWRDRYNHSSPNCAWSEACVAGALGIQLGGPNNYFGERVDKP WIGDAQRDISVDDISRTIRLMWVASTLALALLIAARCGLSGVA" gene complement(2112419..2113805) /gene="cbiA" /locus_tag="STM2035" /db_xref="GeneID:1253556" CDS complement(2112419..2113798) /gene="cbiA" /locus_tag="STM2035" /note="cobyrinic acid A,C-diamide synthase. (SW:CBIA_SALTY)" /codon_start=1 /transl_table=11 /product="cobyrinic acid a,c-diamide synthase" /protein_id="NP_460980.1" /db_xref="GI:16765365" /db_xref="GeneID:1253556" /translation="MAARHHAFILAGTGSGCGKTTVTLGLLRLLQKRALRVQPFKVGP DYLDTGWHTAICGVASRNLDSFMLPPPVLNALFCEQMRQADIAVIEGVMGLYDGYGVD PNYCSTAAMAKQLGCPVILLVDGKAVSTSLAATVMGFQHFDPTLNLAGVIVNRVTSDA HYQLLKNAIEHYCSLPVLGYVPPCDGVALPERHLGLITARESLVNQQSWHDFAATLEQ TVDVDALLSLSVLSALPAGMWPERPDNTAGAGLTLALADDEAFNFYYPDNIDLLERAG VNIVRFSPLHDRALPDCQMIWLGGGYPELYAADLAANTVMLKHLRAAHQRGVAIYAEC GGLMYLGSTLEDSGGEIHQMANIIPGHSKMGKRLTRFGYCEAQAMQPTLLAAPGEIVR GHEFHYSDFIPETPAVMACRKVRDGRVLQEWTGGWQTGNTFASYLHVHFAQRPEMLQH WLAAARRVL" regulatory complement(2112423..2112428) /regulatory_class="ribosome_binding_site" /gene="cibB" /locus_tag="STM2034" /note="putative RBS for cibB; RegulonDB:STMS1H002185" regulatory complement(2113800..2113805) /regulatory_class="ribosome_binding_site" /gene="cbiA" /locus_tag="STM2035" /note="putative RBS for cbiA; RegulonDB:STMS1H002186" gene complement(2114396..2115320) /gene="pocR" /locus_tag="STM2036" /db_xref="GeneID:1253557" CDS complement(2114396..2115307) /gene="pocR" /locus_tag="STM2036" /note="AraC family transcriptional regulation; regulatory protein POCR. (SW:POCR_SALTY)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460981.1" /db_xref="GI:16765366" /db_xref="GeneID:1253557" /translation="MISASALNSELINKIAQDFAQATGLAVVVVNIHGDEISELFNFT PFCQLMRQHPQHSTRCRMSDRCGGLEASKSDQPCIYRCHAGLTDFSIPLVIAGHLVGF VLCGQVRLSNDVELVNILNVDDRWQADPELLNEFRNVPEMDYSRVIASADLLKLIVEN CLKKQLNFVVIKDNPQQSEANKTTRGPTPHDSKMKKALRYIDAHLSDDLRLEDVASHV YLSPYYFSKLFKKYQGIGFNAWVNRQRMVSARELLCHSDWSIASIARNLGFSQTSYFC KVFRQTYQVTPQAYRQQINENSHPPSL" regulatory complement(2115315..2115320) /regulatory_class="ribosome_binding_site" /gene="pocR" /locus_tag="STM2036" /note="putative RBS for pocR; RegulonDB:STMS1H002187" gene complement(2115524..2116324) /gene="pduF" /locus_tag="STM2037" /db_xref="GeneID:1253558" CDS complement(2115524..2116318) /gene="pduF" /locus_tag="STM2037" /note="propanediol diffusion facilitator; propanediol diffusion facilitator. (SW:PDUF_SALTY)" /codon_start=1 /transl_table=11 /product="aquaporin" /protein_id="NP_460982.1" /db_xref="GI:16765367" /db_xref="GeneID:1253558" /translation="MNDSLKAQCGAEFLGTGLFLFFGIGCLSALKVAGASLGLWEICI IWGLGISLAVYLTAGISGGHLNPAVTIALWLFACFPKQKVLPYIIAQFAGAFGGALLA YVLYSSLFTEFETAHHMVRGSVESLQLASIFSTYPAAALNVWQAALVEVVITSILMGM IMALTDDGNGIPKGPLAPLLIGILVAVIGASTGPLTGFAMNPARDFGPKLFTWLAGWG NMAMSGGREIPYFIVPIVAPVIGACAGAAIYRYFIGKNLPCNRCEL" regulatory complement(2116319..2116324) /regulatory_class="ribosome_binding_site" /gene="pduF" /locus_tag="STM2037" /note="putative RBS for pduF; RegulonDB:STMS1H002188" gene 2116837..2117127 /gene="pduA" /locus_tag="STM2038" /db_xref="GeneID:1253559" regulatory 2116837..2116842 /regulatory_class="ribosome_binding_site" /gene="pduA" /locus_tag="STM2038" /note="putative RBS for pduA; RegulonDB:STMS1H002189" CDS 2116843..2117127 /gene="pduA" /locus_tag="STM2038" /note="polyhedral bodies; propanediol utilization protein PDUA. (SW:PDUA_SALTY)" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_460983.1" /db_xref="GI:16765368" /db_xref="GeneID:1253559" /translation="MQQEALGMVETKGLTAAIEAADAMVKSANVMLVGYEKIGSGLVT VIVRGDVGAVKAATDAGAAAARNVGEVKAVHVIPRPHTDVEKILPKGISQ" gene 2117232..2117936 /gene="pudB" /locus_tag="STM2039" /db_xref="GeneID:1253560" regulatory 2117232..2117237 /regulatory_class="ribosome_binding_site" /gene="pudB" /locus_tag="STM2039" /note="putative RBS for pudB; RegulonDB:STMS1H002190" CDS 2117235..2117936 /gene="pudB" /locus_tag="STM2039" /note="polyhedral bodies; propanediol utilization protein PDUB. (SW:PDUB_SALTY)" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_460984.3" /db_xref="GI:1109557673" /db_xref="GeneID:1253560" /translation="MAEKSCSLTEFVGTAIGDTLGLVIANVDTALLDAMKLEKRYRSI GILGARTGAGPHIMAADEAVKATNTEVVSIELPRDTKGGAGHGSLIILGGNDVSDVKR GIEVALKELDRTFGDVYGNEAGHIELQYTARASYALEKAFGAPIGRACGIIVGAPASV GVLMADTALKSANVEVVAYSSPAHGTSFSNEAILVISGDSGAVRQAVTSAREIGKTVL ATLGSEPKNDRPSYI" gene 2117950..2119619 /gene="pduC" /locus_tag="STM2040" /db_xref="GeneID:1253561" regulatory 2117950..2117955 /regulatory_class="ribosome_binding_site" /gene="pduC" /locus_tag="STM2040" /note="putative RBS for pduC; RegulonDB:STMS1H002191" CDS 2117955..2119619 /gene="pduC" /locus_tag="STM2040" /EC_number="4.2.1.30" /note="glycerol dehydratase large subunit. (SW:DHAB_SALTY)" /codon_start=1 /transl_table=11 /product="propanediol dehydratase" /protein_id="NP_460985.1" /db_xref="GI:16765370" /db_xref="GeneID:1253561" /translation="MRSKRFEALAKRPVNQDGFVKEWIEEGFIAMESPNDPKPSIKIV NGAVTELDGKPVSEFDLIDHFIARYGINLNRAEEVMAMDSVKLANMLCDPNVKRSEIV PLTTAMTPAKIVEVVSHMNVVEMMMAMQKMRARRTPSQQAHVTNVKDNPVQIAADAAE GAWRGFDEQETTVAVARYAPFNAIALLVGSQVGRPGVLTQCSLEEATELKLGMLGHTC YAETISVYGTEPVFTDGDDTPWSKGFLASSYASRGLKMRFTSGSGSEVQMGYAEGKSM LYLEARCIYITKAAGVQGLQNGSVSCIGVPSAVPSGIRAVLAENLICSSLDLECASSN DQTFTHSDMRRTARLLMQFLPGTDFISSGYSAVPNYDNMFAGSNEDAEDFDDYNVIQR DLKVDGGLRPVREEDVIAIRNKAARALQAVFAGMGLPPITDEEVEAATYAHGSKDMPE RNIVEDIKFAQEIINKNRNGLEVVKALAQGGFTDVAQDMLNIQKAKLTGDYLHTSAII VGDGQVLSAVNDVNDYAGPATGYRLQGERWEEIKNIPGALDPNEID" gene 2119624..2120304 /gene="pduD" /locus_tag="STM2041" /db_xref="GeneID:1253562" regulatory 2119624..2119629 /regulatory_class="ribosome_binding_site" /gene="pduD" /locus_tag="STM2041" /note="putative RBS for pduD; RegulonDB:STMS1H002192" CDS 2119630..2120304 /gene="pduD" /locus_tag="STM2041" /EC_number="4.2.1.30" /codon_start=1 /transl_table=11 /product="propanediol dehydratase" /protein_id="NP_460986.1" /db_xref="GI:16765371" /db_xref="GeneID:1253562" /translation="MEINEKLLRQIIEDVLRDMKGSDKPVSFNAPAASTAPQTAAPAG DGFLTEVGEARQGTQQDEVIIAVGPAFGLAQTVNIVGLPHKSILREVIAGIEEEGIKA RVIRCFKSSDVAFVAVEGNRLSGSGISIGIQSKGTTVIHQQGLPPLSNLELFPQAPLL TLETYRQIGKNAARYAKRESPQPVPTLNDQMARPKYQAKSAILHIKETKYVVTGKNPQ ELRVAL" gene 2120313..2120840 /gene="pduE" /locus_tag="STM2042" /db_xref="GeneID:1253563" regulatory 2120313..2120318 /regulatory_class="ribosome_binding_site" /gene="pduE" /locus_tag="STM2042" /note="putative RBS for pduE; RegulonDB:STMS1H002193" CDS 2120319..2120840 /gene="pduE" /locus_tag="STM2042" /EC_number="4.2.1.30" /codon_start=1 /transl_table=11 /product="propanediol dehydratase" /protein_id="NP_460987.1" /db_xref="GI:16765372" /db_xref="GeneID:1253563" /translation="MNTDAIESMVRDVLSRMNSLQGDAPAAAPAAGGTSRSAKVSDYP LANKHPEWVKTATNKTLDDFTLENVLSNKVTAQDMRITPETLRLQASIAKDAGRDRLA MNFERAAELTAVPDDRILEIYNALRPYRSTKEELLAIADDLENRYQAKICAAFVREAA GLYVERKKLKGDD" gene 2120844..2122682 /gene="pduG" /locus_tag="STM2043" /db_xref="GeneID:1253564" regulatory 2120844..2120849 /regulatory_class="ribosome_binding_site" /gene="pduG" /locus_tag="STM2043" /note="putative RBS for pduG; RegulonDB:STMS1H002194" CDS 2120850..2122682 /gene="pduG" /locus_tag="STM2043" /codon_start=1 /transl_table=11 /product="diol dehydratase reactivase subunit alpha" /protein_id="NP_460988.1" /db_xref="GI:16765373" /db_xref="GeneID:1253564" /translation="MRYIAGIDIGNSSTEVALARQDETGALTITHSALAETTGIKGTL RNVFGIQEALALVAKRAGINVRDISLIRINEATPVIGDVAMETITETIITESTMIGHN PKTPGGAGLGVGITITPEELLTRPADSSYILVVSSAFDFADIANVINASMRAGYQITG VILQRDDGVLVSNRLEKSLPIVDEVLYIDRIPLGMLAAIEVAVPGKVIETLSNPYGIA TVFNLNADETKNIVPMARALIGNRSAVVVKTPSGDVKARAIPAGNLELQAQGRTVRVD VAAGAEAIMKAVDGCGKLDNVTGEAGTNIGGMLEHVRQTMAELTNKPSSEIFIQDLLA VDTSVPVSVTGGLAGEFSLEQAVGIASMVKSDRLQMAMIAREIEQKLNIDVQIGGAEA EAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGEIIATHLAGAGDMVTMIIAREL GLEDRYLAEEIKKYPLAKVESLFHLRHEDGSVQFFPTPLPPAVFARVCVVKPDELVPL PGDLALEKVRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQ LVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILSWHKEFAHGQ" gene 2122665..2123022 /gene="pduH" /locus_tag="STM2044" /db_xref="GeneID:1253565" regulatory 2122665..2122670 /regulatory_class="ribosome_binding_site" /gene="pduH" /locus_tag="STM2044" /note="putative RBS for pduH; RegulonDB:STMS1H002195" CDS 2122672..2123022 /gene="pduH" /locus_tag="STM2044" /codon_start=1 /transl_table=11 /product="propanediol dehydratase" /protein_id="NP_460989.1" /db_xref="GI:16765374" /db_xref="GeneID:1253565" /translation="MDSNHSAPAIVITVINDCASLWHEVLLGIEEEGIPFLLQHHPAG DIVDSAWQAARSSPLLVGIACDRHSLVVHYKNLPASAPLFTLMHHQDSQAQRNTGNNA ARLVKGIPFRDLHA" gene 2123033..2123316 /gene="pduJ" /locus_tag="STM2045" /db_xref="GeneID:1253566" regulatory 2123033..2123038 /regulatory_class="ribosome_binding_site" /gene="pduJ" /locus_tag="STM2045" /note="putative RBS for pduJ; RegulonDB:STMS1H002196" CDS 2123041..2123316 /gene="pduJ" /locus_tag="STM2045" /note="polyhedral bodies; similar to E. coli detox protein (AAC75510.1); Blastp hit to AAC75510.1 (111 aa), 64% identity in aa 17 - 101" /codon_start=1 /transl_table=11 /product="ethanolamine utilization protein EutM" /protein_id="NP_460990.1" /db_xref="GI:16765375" /db_xref="GeneID:1253566" /translation="MNNALGLVETKGLVGAIEAADAMVKSANVQLVGYEKIGSGLVTV MVRGDVGAVKAAVDAGSAAASVVGEVKSCHVIPRPHSDVEAILPKSA" gene 2123320..2123802 /gene="pduK" /locus_tag="STM2046" /db_xref="GeneID:1253567" CDS 2123320..2123802 /gene="pduK" /locus_tag="STM2046" /note="polyhedral bodies; similar to E. coli detox protein (AAC75510.1); Blastp hit to AAC75510.1 (111 aa), 35% identity in aa 9 - 92" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_460991.3" /db_xref="GI:1109557674" /db_xref="GeneID:1253567" /translation="MANKEHRVKQSLGLLEVCGLALAISCADIMAKSASITLLALEKT NGSGWMVIKITGDVASVQAAITTGAHFAEQWNGLVAHKVIARPGEGILLAETPSPSVI EPEPEASEIADVVSEAPAEEAPQESELVSCNLCLDPKCPRQKGEPRTLCIHSGKRGEA " gene 2123795..2124434 /gene="pduL" /locus_tag="STM2047" /db_xref="GeneID:1253568" regulatory 2123795..2123800 /regulatory_class="ribosome_binding_site" /gene="pduK" /locus_tag="STM2046" /note="putative RBS for pduL; RegulonDB:STMS1H002197" CDS 2123802..2124434 /gene="pduL" /locus_tag="STM2047" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_460992.1" /db_xref="GI:16765377" /db_xref="GeneID:1253568" /translation="MDKELLQSTVRKVLDEMRQRPIPLGVSNRHIHLSAQDYERLFPG HPISEKKALLQPGQYAAEQTVTLVGPKGQLKNVRLLGPLRSVSQVEISRTDARTLGIA APLRMSGNLKGTPGIRLVSPFAELELPSGVIVAQRHIHMSPLDALILRVSHGDMVSVA IEGDDRGLIFNNVAIRVSPDMRLEMHIDTDEANAAGADNPHAFARLVGPR" gene 2124426..2124922 /gene="pduM" /locus_tag="STM2048" /db_xref="GeneID:1253569" regulatory 2124426..2124431 /regulatory_class="ribosome_binding_site" /gene="pduM" /locus_tag="STM2048" /note="putative RBS for pduM; RegulonDB:STMS1H002198" CDS 2124431..2124922 /gene="pduM" /locus_tag="STM2048" /codon_start=1 /transl_table=11 /product="microcompartment protein PduM" /protein_id="NP_460993.1" /db_xref="GI:16765378" /db_xref="GeneID:1253569" /translation="MNGETLQRIVEEIVSRLHRRAQSTATLSVTQLRDADCPALFCQH ASLRILLIDLPLLGQLADAETGDAAARKIHDALAFGIRVQLSLHSQLLPVIPVKKLAR LPLVFTDEHGLPLVLHAGSVLSYRDVALLSRGRVVVHRKCIVTAMARDAANARNIQLI KQE" gene 2124918..2125201 /gene="pduN" /locus_tag="STM2049" /db_xref="GeneID:1253570" regulatory 2124918..2124923 /regulatory_class="ribosome_binding_site" /gene="pduN" /locus_tag="STM2049" /note="putative RBS for pduN; RegulonDB:STMS1H002199" CDS 2124926..2125201 /gene="pduN" /locus_tag="STM2049" /note="polyhedral bodies; similar to E. coli detox protein (AAC75509.1); Blastp hit to AAC75509.1 (95 aa), 43% identity in aa 1 - 83" /codon_start=1 /transl_table=11 /product="ethanolamine utilization protein EutN" /protein_id="NP_460994.1" /db_xref="GI:16765379" /db_xref="GeneID:1253570" /translation="MHLARVTGAVVSTQKSPSLIGKKLLLVRRVSADGELPASPTSGD EVAVDSVGAGVGELVLLSGGSSARHVFSGPNEAIDLAVVGIVDTLSC" gene 2125205..2126221 /gene="pduO" /locus_tag="STM2050" /db_xref="GeneID:1253571" regulatory 2125205..2125210 /regulatory_class="ribosome_binding_site" /gene="pduO" /locus_tag="STM2050" /note="putative RBS for pduO; RegulonDB:STMS1H002200" CDS 2125211..2126221 /gene="pduO" /locus_tag="STM2050" /codon_start=1 /transl_table=11 /product="ATP:cob(I)alamin adenosyltransferase" /protein_id="NP_460995.1" /db_xref="GI:16765380" /db_xref="GeneID:1253571" /translation="MAIYTRTGDAGTTSLFTGQRVSKTHPRVEAYGTLDELNAALSLC ACAAADENHRTLLEAIQQQLFWFSAELASDSEQPSPKQRYISSEEISALEAAIDRAMA RVEPLHSFILPGRCEAASRLHFARTLARRAERRLVELATEVNVRQVLMRYINRLSDCL YALARAEDSDAHQANIIREVSKRYLAACQPPHSKETTPVALSFHDLHQLTRAAVERAQ QLQVPVVVSIVDAHGTETVTWRMPDALLVSSELAPKKAWTAVAMKTATHELSDVVQPG AALYGLESHLQGKVVTFGGGYALWRDGILIGGLGISGGSVEQDMDIAQTAIAAINVGT HQ" gene 2126213..2127612 /gene="pduP" /locus_tag="STM2051" /db_xref="GeneID:1253572" regulatory 2126213..2126218 /regulatory_class="ribosome_binding_site" /gene="pduO" /locus_tag="STM2050" /note="putative RBS for pduP; RegulonDB:STMS1H002201" CDS 2126218..2127612 /gene="pduP" /locus_tag="STM2051" /note="similar to E. coli ethanolamine utilization; similar to acetaldehyde dehydrogenase (AAC75508.1); Blastp hit to AAC75508.1 (467 aa), 45% identity in aa 1 - 466" /codon_start=1 /transl_table=11 /product="aldehyde dehydrogenase EutE" /protein_id="NP_460996.1" /db_xref="GI:16765381" /db_xref="GeneID:1253572" /translation="MNTSELETLIRTILSEQLTTPAQTPVQPQGKGIFQSVSEAIDAA HQAFLRYQQCPLKTRSAIISAMRQELTPLLAPLAEESANETGMGNKEDKFLKNKAALD NTPGVEDLTTTALTGDGGMVLFEYSPFGVIGSVAPSTNPTETIINNSISMLAAGNSIY FSPHPGAKKVSLKLISLIEEIAFRCCGIRNLVVTVAEPTFEATQQMMAHPRIAVLAIT GGPGIVAMGMKSGKKVIGAGAGNPPCIVDETADLVKAAEDIINGASFDYNLPCIAEKS LIVVESVAERLVQQMQTFGALLLSPADTDKLRAVCLPEGQANKKLVGKSPSAMLEAAG IAVPAKAPRLLIALVNADDPWVTSEQLMPMLPVVKVSDFDSALALALKVEEGLHHTAI MHSQNVSRLNLAARTLQTSIFVKNGPSYAGIGVGGEGFTTFTIATPTGEGTTSARTFA RSRRCVLTNGFSIR" gene 2127618..2128736 /gene="pduQ" /locus_tag="STM2052" /db_xref="GeneID:1253573" regulatory 2127618..2127623 /regulatory_class="ribosome_binding_site" /gene="pduQ" /locus_tag="STM2052" /note="putative RBS for pduQ; RegulonDB:STMS1H002202" CDS 2127624..2128736 /gene="pduQ" /locus_tag="STM2052" /note="similar to E. coli CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase (AAC74323.1); Blastp hit to AAC74323.1 (891 aa), 40% identity in aa 574 - 860, 35% identity in aa 456 - 556" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_460997.1" /db_xref="GI:16765382" /db_xref="GeneID:1253573" /translation="MNTFSLQTRLYSGQGSLAVLKRFTNKHIWIICDGFLAHSPLLDT LRNALPADNRISVFSEITPDPTIHTVVQGIAQMQALQPQVVIGFGGGSAMDAAKAIVW FSQQSGINIETCVAIPTTSGTGSEVTSACVISDPDKGIKYPLFNNALYPDMAILDPEL VVSVPPQITANTGMDVLTHALEAWVSPRASDFTDALAEKAAKLVFQYLPTAVEKGDCV ATRGKMHNASTLAGMAFSQAGLGLNHAIAHQLGGQFHLPHGLANALLLTTVIRFNAGV PRAAKRYARLAKACGFCPAEANDIAAINALIQQIELLKQRCVLPSLAVALKEGRSDFS ARIPAMVQAALADVTLRTNPRPANAEAIRELLEELL" gene 2128726..2130088 /gene="pduS" /locus_tag="STM2053" /db_xref="GeneID:1253574" regulatory 2128726..2128731 /regulatory_class="ribosome_binding_site" /gene="pduQ" /locus_tag="STM2052" /note="putative RBS for pduS; RegulonDB:STMS1H002203" CDS 2128733..2130088 /gene="pduS" /locus_tag="STM2053" /note="polyhedral bodies; similar to E. coli putative membrane protein (AAC74701.1); Blastp hit to AAC74701.1 (740 aa), 33% identity in aa 131 - 448, 37% identity in aa 33 - 93" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase" /protein_id="NP_460998.1" /db_xref="GI:16765383" /db_xref="GeneID:1253574" /translation="MSTAINSVEMSLSADEIRERVRAAGVVGAGGAGFPAHVKLQAQV EIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAIDA LTPLLPDGIRLHILPDVYPAGDEVLTIWMATGRRVAPAALPASVGVVVNNVQTVLNIA RAVEQRFPVTRRTLTVNGAVARPLTVTVPIGMSLREVLALAGGATVDDPGFINGGPMM GGLITSLDNPVTKTTGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCPR HLIGHELSPHLLVRAVNFHQAATPQLLLSALTCSECNVCESVACPVGISPMRINRMLK RELRAQNQRYEGPLNPADEMAKYRLVPVKRLIAKLGLSPWYQEAPLVEEEPSVEKVTL QLRQHIGASAVANVAVGERVTRGQCVADVPPGALGAPIHASIDGVVSAISEQAITVVR G" gene 2130085..2130645 /gene="pduT" /locus_tag="STM2054" /db_xref="GeneID:1253575" regulatory 2130085..2130090 /regulatory_class="ribosome_binding_site" /gene="pduT" /locus_tag="STM2054" /note="putative RBS for pduT; RegulonDB:STMS1H002204" CDS 2130091..2130645 /gene="pduT" /locus_tag="STM2054" /note="polyhedral bodies; similar to E. coli detox protein (AAC75510.1); Blastp hit to AAC75510.1 (111 aa), 41% identity in aa 16 - 93, 31% identity in aa 16 - 90" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_460999.1" /db_xref="GI:16765384" /db_xref="GeneID:1253575" /translation="MSQAIGILELTSIAKGMELGDAMLKSANVDLLVSKTICPGKFLL MLGGDIGAIQQAIETGTSQAGEMLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVET WSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVNNAVTVASESAGE KGLLVYRSVIPRPHEAMWRQMVEG" gene 2130638..2130995 /gene="pduU" /locus_tag="STM2055" /db_xref="GeneID:1253576" regulatory 2130638..2130643 /regulatory_class="ribosome_binding_site" /gene="pduU" /locus_tag="STM2055" /note="putative RBS for pduU; RegulonDB:STMS1H002205" CDS 2130645..2130995 /gene="pduU" /locus_tag="STM2055" /note="polyhedral bodies; propanediol utilization protein PDUU. (SW:PDUU_SALTY)" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_461000.1" /db_xref="GI:16765385" /db_xref="GeneID:1253576" /translation="MERQPTTDRMIQEYVPGKQVTLAHLIANPGKDLFKKLGLQDAVS AIGILTITPSEASIIACDIATKSGAVEIGFLDRFTGAVVLTGDVSAVEYALKQVTRTL GEMMQFTTCSITRT" gene 2130995..2131452 /gene="pduV" /locus_tag="STM2056" /db_xref="GeneID:1253577" regulatory 2130995..2131000 /regulatory_class="ribosome_binding_site" /gene="pduV" /locus_tag="STM2056" /note="putative RBS for pduV; RegulonDB:STMS1H002206" CDS 2131000..2131452 /gene="pduV" /locus_tag="STM2056" /note="propanediol utilization protein PDUV. (SW:PDUV_SALTY)" /codon_start=1 /transl_table=11 /product="ethanolamine utilization protein EutP" /protein_id="NP_461001.1" /db_xref="GI:16765386" /db_xref="GeneID:1253577" /translation="MKRLMFIGPSQCGKTSLTQSLRGEALHYKKTQAIEWSPMAIDTP GEYLENRCLYSALLTSACEADVIALVLNADAQWSPFSPGFTAPMNRPTIGLVTKADLA EPQRISLVAEWLTQAGAQQIFITSALNNSGLDAVLDFLNSKEPLCLTK" gene 2131430..2132651 /gene="pduW" /locus_tag="STM2057" /db_xref="GeneID:1253578" regulatory 2131430..2131435 /regulatory_class="ribosome_binding_site" /gene="pduV" /locus_tag="STM2056" /note="putative RBS for pduW; RegulonDB:STMS1H002207" CDS 2131437..2132651 /gene="pduW" /locus_tag="STM2057" /EC_number="2.7.2.1" /note="probable propionate kinase. (SW:PDUW_SALTY)" /codon_start=1 /transl_table=11 /product="acetate kinase" /protein_id="NP_461002.1" /db_xref="GI:16765387" /db_xref="GeneID:1253578" /translation="MSYKIMAINAGSSSLKFQLLEMPQGDMLCQGLIERIGMADAQVT IKTHSQKWQETVPVADHRDAVTLLLEKLLGYQIINSLRDIDGVGHRVAHGGEFFKDST LVTDETLAQIERLAELAPLHNPVNALGIHVFRQLLPDAPSVAVFDTAFHQTLDEPAYI YPLPWHYYAELGIRRYGFHGTSHKYVSGVLAEKLGVPLSALRVICCHLGNGSSICAIK NGRSVNTSMGFTPQSGVMMGTRSGDIDPSILPWIAQRESKTPQQLNQLLNNESGLLGV SGVSSDYRDVEQAANTGNRQAKLALTLFAERIRATIGSYIMQMGGLDALVFTGGIGEN SARARSAVCHNLQFLGLAVDEEKNQRNATFIQTENALVKVAVINTNEELMIAQDVMRI ALPATEGLCVPA" gene 2132709..2133611 /gene="pduX" /locus_tag="STM2058" /db_xref="GeneID:1253579" CDS 2132709..2133611 /gene="pduX" /locus_tag="STM2058" /codon_start=1 /transl_table=11 /product="GHMP kinase" /protein_id="NP_461003.1" /db_xref="GI:16765388" /db_xref="GeneID:1253579" /translation="MRAHYSYLKGDNVAVAQCPASCGELIQGWILGSEKLVSCPVDWY STVAVTAAPPLINERPLSRAMVERVLAHWQYPAHWSNEIRVDVRSSIPVAKGMASSTA DIAATAVATAHHLGHSLDETTLAQLCVSIEPTDSTVFHQLTLFDHNNAATQIACEPPP PIDLLVLESPVTLRTQDYHRLPRQQKLIASSATLQQAWNLVQEACITQNPLRLGEAAT LSAIASQTLLPKPGFTALLSLVEECDLYGLNVAHSGSVVGLMLDRKRHDIARLKGKLA EKKLTRHWPKQHLLKMVTGGVKLQ" gene complement(2133645..2133993) /gene="yeeX" /locus_tag="STM2059" /db_xref="GeneID:1253580" CDS complement(2133645..2133980) /gene="yeeX" /locus_tag="STM2059" /note="similar to E. coli putative alpha helix protein (AAC75068.1); Blastp hit to AAC75068.1 (131 aa), 93% identity in aa 23 - 131" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461004.1" /db_xref="GI:16765389" /db_xref="GeneID:1253580" /translation="METTKPSFQDVLEFVRLFRRKNKLQREIQDIEKKIRDNQKRVLL LDNLSDYIKPGMSVEAIQGIIASMKSDYEDRVDDYIIKNAEISKERRDISKKLKAMGE MKHADVKAE" regulatory complement(2133988..2133993) /regulatory_class="ribosome_binding_site" /gene="yeeX" /locus_tag="STM2059" /note="putative RBS for yeeX; RegulonDB:STMS1H002208" gene complement(2134225..2135296) /gene="yeeA" /locus_tag="STM2060" /db_xref="GeneID:1253581" CDS complement(2134225..2135283) /gene="yeeA" /locus_tag="STM2060" /note="similar to E. coli orf, hypothetical protein (AAC75069.1); Blastp hit to AAC75069.1 (352 aa), 79% identity in aa 1 - 352" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461005.1" /db_xref="GI:16765390" /db_xref="GeneID:1253581" /translation="MRADKSLSPFEIRLYRHYRIVHGIRIALAFILTFLLVRLFSIPE GTWPLITLVVIMGPISFWGNVVPRAFERIGGTILGAALGLVALRLELFSLPLMLVWCA IAMFLCGWLALGKKPYQALLIGITLAVVVGAPAGDMDTALWRGGDVILGSLLAMLFTG IWPQRAFLHWRIQLAHCVTAYNRVYQAALSPNLLERPRLDKHLQRLLNDVVKMRGLIT PASKETRIQKSIFEAIQTINRNLVCMLELQINAHWATRASHFVMLNAHTLRETQQMTQ QTLLTIAHALFEGNPQPVLANTGKLNDIAAELRQLMNEQQGDAVAETPIHGYVWLSME TARQLELLSHLICRALRK" regulatory complement(2135291..2135296) /regulatory_class="ribosome_binding_site" /gene="yeeA" /locus_tag="STM2060" /note="putative RBS for yeeA; RegulonDB:STMS1H002209" gene complement(2135402..2135880) /gene="sbmC" /locus_tag="STM2061" /db_xref="GeneID:1253582" CDS complement(2135402..2135869) /gene="sbmC" /locus_tag="STM2061" /note="DNA gyrase inhibitory protein homolog. (SW:GYRI_SALTY)" /codon_start=1 /transl_table=11 /product="DNA gyrase inhibitor" /protein_id="NP_461006.1" /db_xref="GI:16765391" /db_xref="GeneID:1253582" /translation="MDYEIRQEQKRKIAGFHMVGPWEHTVKQGFEQLMTWVDRQRIVP VEWIAVYYDNPDVVPAEKLRCDTVVSVAENFILPDNSEGVIVTAIEGGEYATAVARVE DRDFAKPWERFFDVLEQDSAYQIASAPCFETYLNNGMEDGYWDIEMYIPVQRK" regulatory complement(2135875..2135880) /regulatory_class="ribosome_binding_site" /gene="sbmC" /locus_tag="STM2061" /note="putative RBS for sbmC; RegulonDB:STMS1H002210" gene complement(2136022..2137200) /gene="dacD" /locus_tag="STM2062" /db_xref="GeneID:1253583" CDS complement(2136022..2137194) /gene="dacD" /locus_tag="STM2062" /EC_number="3.4.16.4" /note="penicillin-binding protein 6b; penicillin-binding protein 6B precursor (D-alanyl-D-alaninecarboxypeptidase). (SW:DACD_SALTY)" /codon_start=1 /transl_table=11 /product="serine-type D-Ala-D-Ala carboxypeptidase" /protein_id="NP_461007.1" /db_xref="GI:16765392" /db_xref="GeneID:1253583" /translation="MLLKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLM DYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNP VFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKK LNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN RNGLLWDKTMHIDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKL LQWGQQNFATVQILHSGKKVGSERIWYGDKEKIALGTEQDFWMALPKAEIPHIKAKYV LDRKELEAPIAAHQQVGEIELYDRDKLIAQWPLVTLESVGKGGMFSRLSDYFQHKA" regulatory complement(2137195..2137200) /regulatory_class="ribosome_binding_site" /gene="dacD" /locus_tag="STM2062" /note="putative RBS for dacD; RegulonDB:STMS1H002211" gene complement(2137318..2138096) /gene="phsC" /locus_tag="STM2063" /db_xref="GeneID:1253584" CDS complement(2137318..2138082) /gene="phsC" /locus_tag="STM2063" /note="thiosulfate reductase cytochrome B subunit. (SW:PHSC_SALTY)" /codon_start=1 /transl_table=11 /product="thiosulfate reductase cytochrome subunit B" /protein_id="NP_461008.1" /db_xref="GI:16765393" /db_xref="GeneID:1253584" /translation="MNTIWGAELHYAPDYWPLWLIYAGVVVLLMLVGLVIHALLRRML APKTAGGEEHRDYLYSLAIRRWHWGNALLFVLLLLSGLFGHFSLGPVALMVQVHTWCG FALLAFWVGFVLINLTTGNGRHYRVNFSGLVTRCIRQTRFYLFGIMKGEAHPFVATEQ NKFNPLQQLAYLAIMYALVPLLIITGLLCLYPQVAGLGPVMLVLHMALAIIGLLFICA HLYLCTLGDTPGQIFRSMVDGYHRHRTAPRGDKSAV" gene complement(2138079..2138665) /gene="phsB" /locus_tag="STM2064" /db_xref="GeneID:1253585" CDS complement(2138079..2138657) /gene="phsB" /locus_tag="STM2064" /note="electron transfer; thiosulfate reductase electron transport proteinPHSB. (SW:PHSB_SALTY)" /codon_start=1 /transl_table=11 /product="thiosulfate reductase electron transport protein PhsB" /protein_id="NP_461009.1" /db_xref="GI:16765394" /db_xref="GeneID:1253585" /translation="MNHLTNQYVMLHDEKRCIGCQACTVACKVLNDVPEGFSRVQVQI RAPEQASNALTHFQFVRVSCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYC VAACPFHVRYLNPQTGVADKCNFCADTRLAAGQSPACVSVCPTDALKFGRLDESEIQR WVGQKEVYRQQEARSGAVSLYRRKEVHQEGKA" regulatory complement(2138091..2138096) /regulatory_class="ribosome_binding_site" /gene="phsB" /locus_tag="STM2064" /note="putative RBS for phsC; RegulonDB:STMS1H002212" regulatory complement(2138660..2138665) /regulatory_class="ribosome_binding_site" /gene="phsB" /locus_tag="STM2064" /note="putative RBS for phsB; RegulonDB:STMS1H002213" gene complement(2138672..2140956) /gene="phsA" /locus_tag="STM2065" /db_xref="GeneID:1253586" CDS complement(2138672..2140948) /gene="phsA" /locus_tag="STM2065" /note="thiosulfate reductase precursor. (SW:PHSA_SALTY)" /codon_start=1 /transl_table=11 /product="thiosulfate reductase PhsA" /protein_id="NP_461010.1" /db_xref="GI:16765395" /db_xref="GeneID:1253586" /translation="MSISRRSFLQGVGIGCSACALGAFPPGALARNPIAGINGKTTLT PSLCEMCSFRCPIQAQVVNNKTVFIQGNPSAPQQGTRICARGGSGVSLVNDPQRIVKP MKRTGPRGDGEWQVISWQQAYQEIAAKMNAIKAQHGPESVAFSSKSGSLSSHLFHLAT AFGSPNTFTHASTCPAGKAIAAKVMMGGDLAMDIANTRYLVSFGHNLYEGIEVADTHE LMTAQEKGAKMVSFDPRLSIFSSKADEWHAIRPGGDLAVLLAMCHVMIDEQLYDASFV ERYTSGFEQLAQAVKETTPEWAAAQADVPADVIVRVTRELAACAPHAIVSPGHRATFS QEEIDMRRMIFTLNVLLGNIEREGGLYQKKNASVYNKLAGEKVAPTLAKLNIKNMPKP TAQRIDLVAPQFKYIAAGGGVVQSIIDSALTQKPYPIKAWIMSRHNPFQTVTCRSDLV KTVEQLDLVVSCDVYLSESAAYADYLLPECTYLERDEEVSDMSGLHPAYALRQQVVEP IGEARPSWQIWKELGEQLGLGQYYPWQDMQTRQLYQLNGDHALAKELRQKGYLEWGVP LLLREPESVRQFTARYPGAIATDSDNTYGEQLRFKSPSGKIELYSATLEELLPGYGVP RVRDFALKKENELYFIQGKVAVHTNGATQYVPLLSELMWDNAVWVHPQTAQEKGIKTG DEIWLENATGKEKGKALVTPGIRPDTLFVYMGFGAKAGAKTAATTHGIHCGNLLPHVT SPVSGTVVHTAGVTLSRA" regulatory complement(2140951..2140956) /regulatory_class="ribosome_binding_site" /gene="phsA" /locus_tag="STM2065" /note="putative RBS for phsA; RegulonDB:STMS1H002214" gene 2141556..2143915 /gene="sopA" /locus_tag="STM2066" /db_xref="GeneID:1253587" regulatory 2141556..2141561 /regulatory_class="ribosome_binding_site" /gene="sopA" /locus_tag="STM2066" /note="putative RBS for sopA; RegulonDB:STMS1H002215" CDS 2141567..2143915 /gene="sopA" /locus_tag="STM2066" /note="similar to secreted effector protein of Salmonella dublin; similar to E. coli orf, hypothetical protein (AAC77008.1); Blastp hit to AAC77008.1 (442 aa), 24% identity in aa 194 - 432, 20% identity in aa 59 - 151, 23% identity in aa 34 - 71, 32% identity in aa 19 - 50" /codon_start=1 /transl_table=11 /product="E3 ubiquitin--protein ligase" /protein_id="NP_461011.1" /db_xref="GI:16765396" /db_xref="GeneID:1253587" /translation="MKISSGAINFSTIPNQVKKLITSIREHTKNGLTSKITSVKNTHT SLNEKFKTGKDSPIEFALPQKIKDFFQPKDKNTLNKTLITVKNIKDTNNAGKKNISAE DVSKMNAAFMRKHIANQTCDYNYRMTGAAPLPGGVSVSANNRPTVSEGRTPPVSPSLS LQATSSPSSPADWAKKLTDAVLRQKAGETLTAADRDFSNADFRNITFSKILPPSFMER DGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYS ITTQQQPSFIDTTLKNTLIRHKANLSGVILNEPDNSSPPSVSGGGNFIRLGDIWLQMP LLWTENAVDGFLNHEHNNGKSILMTIDSLPDKYSQEKVQAMEDLVKSLRGGRLTEACI RPVESSLVSVLAHPPYTQSALISEWLGPVQERFFAHQCQTYNDVPLPAPDTYYQQRIL PVLLDSFDRNSAAMTTHSGLFNQVILHCMTGVDCTDGTRQKAAALYEQYLAHPAVSPH IHNGLFGNYDGSPDWTTRAADNFLLLSSQDSDTAMMLSTDTLLTMLNPTPDTAWDNFY LLRAGENVSTAQISPVELFRHDFPVFLAAFNQQATQRRFGELIDIILSTEEHGELNQQ FLAATNQKHSTVKLIDDASVSRLATIFDPLLPEGKLSPAHYQHILSAYHLTDATPQKQ AETLFCLSTAFARYSSSAIFGTEHDSPPALRGYAEALMQKAWELSPAIFPSSEQFTEW SDRFHGLHGAFTCTSVVADSMQRHARKYFPSVLSSILPLAWA" gene 2144242..2145688 /gene="sbcB" /locus_tag="STM2067" /db_xref="GeneID:1253588" regulatory 2144242..2144247 /regulatory_class="ribosome_binding_site" /gene="sbcB" /locus_tag="STM2067" /note="putative RBS for sbcB; RegulonDB:STMS1H002216" CDS 2144258..2145688 /gene="sbcB" /locus_tag="STM2067" /EC_number="3.1.11.1" /note="3' --> 5' specific; deoxyribophosphodiesterase; similar to E. coli exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase (AAC75072.1); Blastp hit to AAC75072.1 (475 aa), 93% identity in aa 8 - 475" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease I" /protein_id="NP_461012.1" /db_xref="GI:16765397" /db_xref="GeneID:1253588" /translation="MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVI GEPEVFYCKPADDYLPQPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVG YNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDD GLPSFRLEHLTRANGIEHSNAHDAMADVYATIAMAQLVKTRQPRLFDYLYSHRSKHKL AALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELD SDTLRERLYTAKADLGDHAAVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDN LKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQLYDGFFSDADRAAMKIVLETEPRNL PALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQVLTPEFLQQYANELQM LSQQYAEDKTKLGLLKSLWQYATEIV" gene complement(2145824..2147195) /gene="yeeF" /locus_tag="STM2068" /db_xref="GeneID:1253589" CDS complement(2145824..2147188) /gene="yeeF" /locus_tag="STM2068" /note="similar to E. coli putative amino acid/amine transport protein (AAC75075.1); Blastp hit to AAC75075.1 (454 aa), 99% identity in aa 1 - 454" /codon_start=1 /transl_table=11 /product="putative APC family amino acid transport protein" /protein_id="NP_461013.1" /db_xref="GI:16765398" /db_xref="GeneID:1253589" /translation="MTMSHNVTPNTSRVELRKTLTLVPVVMMGLAYMQPMTLFDTFGI VSGLTDGHVPTAYAFALIAILFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGW SSLLDYLFAPMINILLAKIYFEALVPSIPSWVFVVALVAFMTAFNLRSLKSVANFNTV IVVLQVVLIAVILGMVVYGVFEGEGAGTLASTRPFWSGDAHVIPMITGATILCFSFTG FDGISNLSEETKDAERVIPRAIFLTALIGGLIFIFATYFLQLYFPDISRFKDPDASQP EIMLYVAGKTFQVGALIFSTITVLASGMAAHAGVARLMYVMGRDGVFPKSFFGYVHPK WRTPAMNIILVGAIALLAINFDLVMATALINFGALVAFTFVNLSVISQFWIREKRNKT LKDHFQYLFLPMCGALTVGALWVNLEESSMVLGLIWAGIGLIYLACVTKSFRNPVPQY EDVA" regulatory complement(2147190..2147195) /regulatory_class="ribosome_binding_site" /gene="yeeF" /locus_tag="STM2068" /note="putative RBS for yeeF; RegulonDB:STMS1H002217" gene complement(2147468..2148394) /gene="yeeY" /locus_tag="STM2069" /db_xref="GeneID:1253590" CDS complement(2147468..2148382) /gene="yeeY" /locus_tag="STM2069" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC75076.1); Blastp hit to AAC75076.1 (316 aa), 87% identity in aa 8 - 309" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_461014.1" /db_xref="GI:16765399" /db_xref="GeneID:1253590" /translation="MKPLLDVLIILDALEKEGSFAAASAKLFKTPSALSYTVHKLEND LNIQLLDRSGHRARFTRTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDT FPFSLLAPLIDAFYQRHSVTRLKFVNGVLGGSWETLTQGRADIIVGAMRAPPPDTGFG FARLGDLELVFAVAPHHPLVHEEEPLSRQTIKRFRAIVVGDSVHSSRSIGSELLDAQE AITVFDFKTKLELQISGLGCGYLPRYLAQRFLESGALIEKKVVAQIVYEPVWVGWNEQ TAGLASGWWRDEILANNAIAGVYAKSPV" regulatory complement(2148389..2148394) /regulatory_class="ribosome_binding_site" /gene="yeeY" /locus_tag="STM2069" /note="putative RBS for yeeY; RegulonDB:STMS1H002218" gene complement(2148428..2149265) /gene="yeeZ" /locus_tag="STM2070" /db_xref="GeneID:1253591" CDS complement(2148428..2149252) /gene="yeeZ" /locus_tag="STM2070" /note="similar to E. coli putative enzyme of sugar metabolism (AAC75077.1); Blastp hit to AAC75077.1 (274 aa), 89% identity in aa 1 - 274" /codon_start=1 /transl_table=11 /product="NAD(P)-dependent oxidoreductase" /protein_id="NP_461015.1" /db_xref="GI:16765400" /db_xref="GeneID:1253591" /translation="MKKVAIVGLGWLGMPLAMSLAARGWQVTGSKTTLDGVEAARMSG IESYPLRLEPELVCEADDLDALLDVDALVITLPARRSGPGEDFYLQAMQELVDSALAY RIPRIIFTSSTSVYGDAQGVVKENTPRNPVTASGRTLKELEDWLHNLPGTSVDILRLA GLVGPGRHPGRFFAGKTAPDGQHGVNLVHLEDVVGAITLLLQAPKGGHIYNICAPAHP ARNVFYPQMTRLLGMAPPHFRDAPDNGKGKIIDGSRICNELGFEYQYPDPLVMPME" regulatory complement(2149260..2149265) /regulatory_class="ribosome_binding_site" /gene="yeeZ" /locus_tag="STM2070" /note="putative RBS for yeeZ; RegulonDB:STMS1H002219" gene 2149600..2150511 /gene="hisG" /locus_tag="STM2071" /db_xref="GeneID:1253592" regulatory 2149600..2149605 /regulatory_class="ribosome_binding_site" /gene="hisG" /locus_tag="STM2071" /note="putative RBS for hisG; RegulonDB:STMS1H002220" CDS 2149612..2150511 /gene="hisG" /locus_tag="STM2071" /EC_number="2.4.2.17" /note="ATP phosphoribosyltransferase. (SW:HIS1_SALTY)" /codon_start=1 /transl_table=11 /product="ATP phosphoribosyltransferase" /protein_id="NP_461016.1" /db_xref="GI:16765401" /db_xref="GeneID:1253592" /translation="MLDNTRLRIAIQKSGRLSDDSRELLARCGIKINLHTQRLIAMAE NMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYLTLRRLDFG GCRLSLATPVDEAWDGPAALDGKRIATSYPHLLKRYLDQKGVSFKSCLLNGSVEVAPR AGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMAQSKQELIDKLLTRIQ GVIQARESKYIMMHAPSERLEEVIALLPGAERPTILPLAGEQQRVAMHMVSSETLFWE TMEKLKALGASSILVLPIEKMME" gene 2150600..2151918 /gene="hisD" /locus_tag="STM2072" /db_xref="GeneID:1253593" regulatory 2150600..2150605 /regulatory_class="ribosome_binding_site" /gene="hisD" /locus_tag="STM2072" /note="putative RBS for hisD; RegulonDB:STMS1H002221" CDS 2150614..2151918 /gene="hisD" /locus_tag="STM2072" /EC_number="1.1.1.23" /note="histidinol dehydrogenase. (SW:HISX_SALTY)" /codon_start=1 /transl_table=11 /product="histidinol dehydrogenase" /protein_id="NP_461017.1" /db_xref="GI:16765402" /db_xref="GeneID:1253593" /translation="MSFNTLIDWNSCSPEQQRALLTRPAISASDSITRTVSDILDNVK TRGDDALREYSAKFDKTEVTALRVTPEEIAAAGARLSDELKQAMTAAVKNIETFHSAQ TLPPVDVETQPGVRCQQVTRPVSSVGLYIPGGSAPLFSTVLMLATPARIAGCQKVVLC SPPPIADEILYAAQLCGVQEIFNVGGAQAIAALAFGSESVPKVDKIFGPGNAFVTEAK RQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPDAD IARKVAEAVERQLAELPRADTARQALSASRLIVTKDLAQCVAISNQYGPEHLIIQTRN ARDLVDAITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTV QELSKAGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQA" gene 2151904..2152994 /gene="hisC" /locus_tag="STM2073" /db_xref="GeneID:1253594" regulatory 2151904..2151909 /regulatory_class="ribosome_binding_site" /gene="hisC" /locus_tag="STM2073" /note="putative RBS for hisC; RegulonDB:STMS1H002222" CDS 2151915..2152994 /gene="hisC" /locus_tag="STM2073" /EC_number="2.6.1.9" /note="histidinol-phosphate aminotransferase. (SW:HIS8_SALTY)" /codon_start=1 /transl_table=11 /product="histidinol-phosphate transaminase" /protein_id="NP_461018.1" /db_xref="GI:16765403" /db_xref="GeneID:1253594" /translation="MSTENTLSVADLARENVRNLVPYQSARRLGGNGDVWLNANEFPT AVEFQLTQQTLNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELVIRAFCEPG KDAILYCPPTYGMYSVSAETIGVERRTVPALENWQLDLQGISDNLDGTKVVFVCSPNN PTGQLINPQDLRTLLELTRGKAIVVADEAYIEFCPQATLTGWLVEYPHLVILRTLSKA FALAGLRCGFTLANEEVINLLLKVIAPYPLSTPVADIAAQALCPQGINAMRDRVAQTV QERQYLVNALQQTACVEHVFDSETNYILARFTASSSVFKSLWDQGIILRDQNKQPSLS GCLRITVGTRQENQRVIDALRAEPV" gene 2152980..2154058 /gene="hisB" /locus_tag="STM2074" /db_xref="GeneID:1253595" regulatory 2152980..2152985 /regulatory_class="ribosome_binding_site" /gene="hisB" /locus_tag="STM2074" /note="putative RBS for hisB; RegulonDB:STMS1H002223" CDS 2152991..2154058 /gene="hisB" /locus_tag="STM2074" /EC_number="3.1.3.15" /EC_number="4.2.1.19" /note="bifunctional; histidine biosynthesis bifunctional protein HISB [includes:histidinol-phosphatase ]. (SW:HIS7_SALTY)" /codon_start=1 /transl_table=11 /product="bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase" /protein_id="NP_461019.1" /db_xref="GI:16765404" /db_xref="GeneID:1253595" /translation="MSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPEVIPVLLKLQ KAGFKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVCFDEVLICPHLPADDCD CRKPKVKLVERYLAEQAMDSANSYVIGDRATDIQLADNMGITGLRYHRETLNWTMIGE QLTKRDRYAHVVRNTKETQIDVSVWLDREGNSKINTGVGFFDHMLDQIATHGGFRMEI TVKGDLYIDDHHTVEDTGLALGEALKLALGDKRGICRFGFVLPMDECLARCALDISGR PHLEYKAEFTYQRVGDLSTEMIEHFFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFG RTLRQAIRVEGDTLPSSKGVL" gene 2154045..2154648 /gene="hisH" /locus_tag="STM2075" /db_xref="GeneID:1253596" regulatory 2154045..2154050 /regulatory_class="ribosome_binding_site" /gene="hisH" /locus_tag="STM2075" /note="putative RBS for hisH; RegulonDB:STMS1H002224" CDS 2154055..2154648 /gene="hisH" /locus_tag="STM2075" /EC_number="2.4.2.-" /note="subunit with HisF; amidotransferase HISH. (SW:HIS5_SALTY)" /codon_start=1 /transl_table=11 /product="glutamine amidotransferase" /protein_id="NP_461020.3" /db_xref="GI:1109557675" /db_xref="GeneID:1253596" /translation="MMNVVILDTGCANLSSVKSAVARHGYTPVVSREAEIVLRADKLF LPGVGTAQAAMDQLRERELIDLIKACTQPVLGICLGMQLLGRRSEETRGVDLLNIIEQ DVPKMTDFGLPLPHMGWNRVYPQAGNRLFQGIEDGAYFYFVHSYAMPVNPWTIAQCNY GEPFTAAVQKDNFFGVQFHPERSGAAGAQLLKNFLEM" gene 2154637..2155385 /gene="hisA" /locus_tag="STM2076" /db_xref="GeneID:1253597" regulatory 2154637..2154642 /regulatory_class="ribosome_binding_site" /gene="hisH" /locus_tag="STM2075" /note="putative RBS for hisA; RegulonDB:STMS1H002225" CDS 2154648..2155385 /gene="hisA" /locus_tag="STM2076" /EC_number="5.3.1.16" /note="phosphoribosylformimino-5-aminoimidazole carboxamide ribotideisomerase. (SW:HIS4_SALTY)" /codon_start=1 /transl_table=11 /product="1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase" /protein_id="NP_461021.1" /db_xref="GI:16765406" /db_xref="GeneID:1253597" /translation="MIIPALDLIDGTVVRLHQGDYARQRDYGNDPLPRLQDYAAQGAG VLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRTEEDVAALLKAGVARVVIG STAVKSPDVVKGWFERFGAQALVLALDVRIDEHGTKQVAVSGWQENSGVSLEQLVETY LPVGLKHVLCTDISRDGTLAGSNVSLYEEVCARYPQIAFQSSGGIGDIDDIAALRGTG VRGVIVGRALLEGKFTVKEAIQCWQNV" gene 2155353..2156143 /gene="hisF" /locus_tag="STM2077" /db_xref="GeneID:1253598" regulatory 2155353..2155358 /regulatory_class="ribosome_binding_site" /gene="hisA" /locus_tag="STM2076" /note="putative RBS for hisF; RegulonDB:STMS1H002226" CDS 2155367..2156143 /gene="hisF" /locus_tag="STM2077" /EC_number="2.4.2.-" /note="subunit with HisH; HISF protein (cyclase). (SW:HIS6_SALTY)" /codon_start=1 /transl_table=11 /product="imidazole glycerol phosphate synthase subunit HisF" /protein_id="NP_461022.1" /db_xref="GI:16765407" /db_xref="GeneID:1253598" /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAKRYADEGA DELVFYDITASSDGRVVDKSWVARVAEVIDIPFCVAGGIRSIDDAAKILSFGADKISI NSPALADPTLITRLADRFGVQCIVVGIDTWFDDATGKYHVNQYTGDENRTRVTQWETL DWVQEVQQRGAGEIVLNMMNQDGVRNGYDLTQLKKVRDVCRVPLIASGGAGTMEHFLE AFRDADVDGALAASVFHKQIINIGELKAYLAGQGVEIRIC" gene 2156131..2156748 /gene="hisI" /locus_tag="STM2078" /db_xref="GeneID:1253599" regulatory 2156131..2156136 /regulatory_class="ribosome_binding_site" /gene="hisI" /locus_tag="STM2078" /note="putative RBS for hisI; RegulonDB:STMS1H002227" CDS 2156137..2156748 /gene="hisI" /locus_tag="STM2078" /EC_number="3.5.4.19" /EC_number="3.6.1.31" /note="bifunctional; histidine biosynthesis bifunctional protein HISIE [includes:phosphoribosyl-amp cyclohydrolase ]. (SW:HIS2_SALTY)" /codon_start=1 /transl_table=11 /product="bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase" /protein_id="NP_461023.1" /db_xref="GI:16765408" /db_xref="GeneID:1253599" /translation="MLTEQQRRELDWEKTDGLMPAIVQHAVSGEVLMLGYMNPQALDK TIESGHVTFFSRTKQRLWTKGETSGHVLNVVSIAPDCDNDTLLVLANPVGPTCHKGTS SCFGDASHQWLFLYQLEQLLAERKTADPTSSYTAKLYASGTKRIAQKVGEEGVETALA ATVNDRFELTNEASDLMYHLLVLLQDQDLNLTTVIDNLRKRHQ" gene complement(2156829..2157822) /gene="wzzB" /locus_tag="STM2079" /db_xref="GeneID:1253600" CDS complement(2156829..2157812) /gene="wzzB" /locus_tag="STM2079" /note="chain length determinant protein (polysaccharide antigen chainregulator). (SW:WZZB_SALTY)" /codon_start=1 /transl_table=11 /product="LPS O-antigen chain length determinant protein WzzB" /protein_id="NP_461024.1" /db_xref="GI:16765409" /db_xref="GeneID:1253600" /translation="MTVDSNTSSGRGNDPEQIDLIELLLQLWRGKMTIIVAVIIAILL AVGYLMIAKEKWTSTAIITQPDAAQVATYTNALNVLYGGNAPKISEVQANFISRFSSA FSALSEVLDNQKEREKLTIEQSVKGQALPLSVSYVSTTAEGAQRRLAEYIQQVDEEVA KELEVDLKDNITLQTKTLQESLETQEVVAQEQKDLRIKQIEEALRYADEAKITQPQIQ QTQDVTQDTMFLLGSDALKSMIQNEATRPLVFSPAYYQTKQTLLDIKNLKVTADTVHV YRYVMKPTLPVRRDSPKTAITLVLAVLLGGMIGAGIVLGRNALRSYKPKAL" regulatory complement(2157817..2157822) /regulatory_class="ribosome_binding_site" /gene="wzzB" /locus_tag="STM2079" /note="putative RBS for wzzB; RegulonDB:STMS1H002228" gene complement(2157955..2159121) /gene="udg" /locus_tag="STM2080" /db_xref="GeneID:1253601" CDS complement(2157955..2159121) /gene="udg" /locus_tag="STM2080" /EC_number="1.1.1.22" /note="UDP-glucose 6-dehydrogenase. (SW:UDG_SALTY)" /codon_start=1 /transl_table=11 /product="UDP-glucose 6-dehydrogenase" /protein_id="NP_461025.1" /db_xref="GI:16765410" /db_xref="GeneID:1253601" /translation="MKITISGTGYVGLSNGLLIAQHHDVVALDIVPSRVELLNDRISP IVDKEIQQFLKEDNIRFRATLDKFDAYQNADYVIIATPTDYDPKTNYFNTSSVESVMQ DVISINPAAVMIIKSTVPVGFTAAMRQKFATENIIFSPEFLREGKALYDNLYPSRIVI GEQSERAREFAALLQEGAIKQEIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYA ETLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYQSVPNNIISAI VEANRTRKDFIADAILARKPKVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVII YEPVMEEDTFFNSRLERDLHCFKQQADVIISNRMAAELLDVAEKVYTRDLFGSD" gene complement(2159358..2160776) /gene="gnd" /locus_tag="STM2081" /db_xref="GeneID:1253602" CDS complement(2159358..2160764) /gene="gnd" /locus_tag="STM2081" /EC_number="1.1.1.44" /note="decarboxylating; 6-phosphogluconate dehydrogenase, decarboxylating. (SW:6PGD_SALTY)" /codon_start=1 /transl_table=11 /product="phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)" /protein_id="NP_461026.1" /db_xref="GI:16765411" /db_xref="GeneID:1253602" /translation="MSKQQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIA ENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLEKGDIIIDGGN TFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKDAYELVAPILTKIA AVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLSNEELANT FTEWNNGELSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEP LSLITESVFARYISSLKAQRVAASKVLSGPKAQPAGDKAEFIEKVRRALYLGKIVSYA QGFSQLRAASDEYHWDLNYGEIAKIFRAGCIIRAQFLQKITDAYAENADIANLLLAPY FKKIADEYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGA HTYKRTDKEGIFHTEWLE" regulatory complement(2160771..2160776) /regulatory_class="ribosome_binding_site" /gene="gnd" /locus_tag="STM2081" /note="putative RBS for gnd; RegulonDB:STMS1H002229" gene complement(2160928..2162365) /gene="rfbP" /locus_tag="STM2082" /db_xref="GeneID:1253603" CDS complement(2160928..2162358) /gene="rfbP" /locus_tag="STM2082" /note="bifunctional enzyme; LPS side chain defect; undecaprenyl-phosphate galactosephosphotransferase. (SW:RFBP_SALTY)" /codon_start=1 /transl_table=11 /product="UDP-phosphate galactose phosphotransferase" /protein_id="NP_461027.1" /db_xref="GI:16765412" /db_xref="GeneID:1253603" /translation="MDNIDNKYNPQLCKIFLAISDLIFFNLALWFSLGCVYFIFDQVQ RFIPQDQLDTRVITHFILSVVCVGWFWIRLRHYTYRKPFWYELKEIFRTIVIFAIFDL ALIAFTKWQFSRYVWVFCWTFALILVPFFRALTKHLLNKLGIWKKKTIILGSGQNARG AYSALQSEEMMGFDVIAFFDTDASDAEINMLPVIKDTEIIWDLNRTGDVHYILAYEYT ELEKTHFWLRELSKHHCRSVTVVPSFRGLPLYNTDMSFIFSHEVMLLRIQNNLAKRSS RFLKRTFDIVCSIMILIIASPLMIYLWYKVTRDGGPAIYGHQRVGRHGKLFPCYKFRS MVMNSQEVLKELLANDPIARAEWEKDFKLKNDPRITAVGRFIRKTSLDELPQLFNVLK GDMSLVGPRPIVSDELERYCDDVDYYLMAKPGMTGLWQVSGRNDVDYDTRVYFDSWYV KNWTLWNDIAILFKTAKVVLRRDGAY" regulatory complement(2162360..2162365) /regulatory_class="ribosome_binding_site" /gene="rfbP" /locus_tag="STM2082" /note="putative RBS for rfbP; RegulonDB:STMS1H002230" gene complement(2162430..2163870) /gene="rfbK" /locus_tag="STM2083" /db_xref="GeneID:1253604" CDS complement(2162430..2163863) /gene="rfbK" /locus_tag="STM2083" /EC_number="5.4.2.8" /EC_number="1.1.1.44" /note="LPS side chain defect: phosphomannomutase. (SW:RFBK_SALTY)" /codon_start=1 /transl_table=11 /product="phosphomannomutase" /protein_id="NP_461028.1" /db_xref="GI:16765413" /db_xref="GeneID:1253604" /translation="MNVVNNSRDVIYSSGIVFGTSGARGLVKDFTPQVCAAFTVSFVA VMQEHFSFDTVALAIDNRPSSYGMAQACAAALADKGVNCIFYGVVPTPALAFQSMSDN MPAIMVTGSHIPFERNGLKFYRPDGEITKHDEAAILSVEDTCSHLELKELIVSEMAAV NYISRYTSLFSTPFLKNKRIGIYEHSSAGRDLYKPLFIALGAEVVSLGRSDNFVPIDT EAVSKEDREKARSWAKEFDLDAIFSTDGDGDRPLIADEAGEWLRGDILGLLCSLALDA EAVAIPVSCNSIISSGRFFKHVKLTKIGSPYVIEAFNELSRSYSRIVGFEANGGFLLG SDICINEQNLHALPTRDAVLPAIMLLYKSRNTSISALVNELPTRYTHSDRLQGITTDK SQSLISMGRENLSNLLSYIGLENEGAISTDMTDGMRITLRDGCIVHLRASGNAPELRC YAEANLLNRAQDLVNTTLANIKKRCLL" gene complement(2163850..2165292) /gene="rfbM" /locus_tag="STM2084" /db_xref="GeneID:1253605" CDS complement(2163850..2165289) /gene="rfbM" /locus_tag="STM2084" /EC_number="2.7.7.22" /EC_number="1.1.1.44" /note="LPS side chain defect: mannose-1-phosphate guanylyltransferase GDP). (SW:RFBM_SALTY)" /codon_start=1 /transl_table=11 /product="mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase" /protein_id="NP_461029.1" /db_xref="GI:16765414" /db_xref="GeneID:1253605" /translation="MSFLPVIMAGGTGSRLWPLSREYHPKQFLSVEGKLSMLQNTIKR LASLSTEEPVVICNDRHRFLVAEQLREIDKLANNIILEPVGRNTAPAIALAAFCALQN ADNADPLLLVLAADHVIQDEIAFTKAVRHAEEYAANGKLVTFGIVPTHAETGYGYIRR GELIGNDAYAVAEFVEKPDIDTAGDYFKSGKYYWNSGMFLFRASSYLNELKYLSPEIY KACEKAVGHINPDLDFIRIDKEEFMSCPSDSIDYAVMEHTQHAVVIPMSAGWSDVGSW SSLWDISNKDHQRNVLKGDIFAHACNDNYIYSEDMFISAIGVSNLVIVQTTDALLVAN KDTVQDVKKIVDYLKRNDRNEYKQHQEVFRPWGKYNVIDSGKNYLVRCITVKPGEKFV AQMHHHRAEHWIVLSGTARVTKGEQTYMVSENESTFIPPNTIHALENPGMTPLKLIEI QSGTYLGEDDIIRLEQRSGFSKEWTNERS" regulatory complement(2163865..2163870) /regulatory_class="ribosome_binding_site" /gene="rfbK" /locus_tag="STM2083" /note="putative RBS for rfbK; RegulonDB:STMS1H002231" regulatory complement(2165287..2165292) /regulatory_class="ribosome_binding_site" /gene="rfbM" /locus_tag="STM2084" /note="putative RBS for rfbM; RegulonDB:STMS1H002232" gene complement(2165290..2166240) /gene="rfbN" /locus_tag="STM2085" /db_xref="GeneID:1253606" CDS complement(2165290..2166234) /gene="rfbN" /locus_tag="STM2085" /note="LPS side chain defect: putative rhamnosyltransferase RFBN. (SW:RFBN_SALTY)" /codon_start=1 /transl_table=11 /product="rhamnosyltransferase" /protein_id="NP_461030.1" /db_xref="GI:16765415" /db_xref="GeneID:1253606" /translation="MKITLIIPTYNAGSLWPNVLDAIKQQTIYPDKLIVIDSGSKDET VPLASDLKNISIFNIDSKDFNHGGTRNLAVAKTLDADVIIFLTQDAILADSDAIKNLV YYFSDPLIAAVCGRQLPHKDANPLAVHARNFNYSSKSIVKSKADIEKLGIKTVFMSNS FAAYRRSVFEELSGFPEHTILAEDMFMAAKMIQAGYKVAYCAEAVVRHSHNYTPREEF QRYFDTGVFHACSPWIQRDFGGAGGEGFRFVKSEIQFLLKNAPFWIPRALLTTFAKFL GYKLGKHWQSLPLSTCRYFSMYKSYWNNIQYSSSKEIK" gene complement(2166235..2167302) /gene="rfbU" /locus_tag="STM2086" /db_xref="GeneID:1253607" CDS complement(2166235..2167296) /gene="rfbU" /locus_tag="STM2086" /note="LPS side chain defect; RFBU protein. (SW:RFBU_SALTY)" /codon_start=1 /transl_table=11 /product="mannosyl transferase" /protein_id="NP_461031.1" /db_xref="GI:16765416" /db_xref="GeneID:1253607" /translation="MIVNLSRLGKSGTGMWQYSIKFLTALREIADVDAIICSKVHADY FEKLGYAVVTVPNIVSNTSKTSRLRPLVWYVYSYWLALRVLIKFGNKKLVCTTHHTIP LLRNQTITVHDIRPFYYPDSFIQKVYFRFLLKMSVKRCKHVLTVSYTVKDSIAKTYNV DSEKISVIYNSVNKSDFIQKKEKENYFLAVGASWPHKNIHSFIKNKKVWSDSYNLIIV CGRTDYAMSLQQMVVDLELKDKVTFLHEVSFNELKILYSKAYALVYPSIDEGFGIPPI EAMASNTPVIVSDIPVFHEVLTNGALYVNPDDEKSWQSAIKNIEQLPDAISRFNNYVA RYDFDNMKQMVGNWLAESK" regulatory complement(2166235..2166240) /regulatory_class="ribosome_binding_site" /gene="rfbN" /locus_tag="STM2085" /note="putative RBS for rfbN; RegulonDB:STMS1H002233" regulatory complement(2167297..2167302) /regulatory_class="ribosome_binding_site" /gene="rfbU" /locus_tag="STM2086" /note="putative RBS for rfbU; RegulonDB:STMS1H002234" gene complement(2167616..2168622) /gene="rfbV" /locus_tag="STM2087" /db_xref="GeneID:1253608" CDS complement(2167616..2168617) /gene="rfbV" /locus_tag="STM2087" /note="LPS side chain defect; RFBV protein. (SW:RFBV_SALTY)" /codon_start=1 /transl_table=11 /product="abequosyltransferase" /protein_id="NP_461032.1" /db_xref="GI:16765417" /db_xref="GeneID:1253608" /translation="MLISFCIPTYNRKEYLEELLNSINNQEKFNLDIEICISDNASTD GTEEMIDVWRNNYNFPIIYRRNSVNLGPDRNFLASVSLANGDYCWIFGSDDALAKDSL AILQTYLDSQADIYLCDRKETGCDLVEIRNPHRSWLRTDDELYVFNNNLDREIYLSRC LSIGGVFSYLSSLIVKKERWDAIDFDASYIGTSYPHVFIMMSVFNTPGCLLHYISKPL VICRGDNDSFEKKGKARRILIDFIAYLKLANDFYSKNISLKRAFENVLLKERPWLYTT LAMACYGNSDEKRDLSEFYAKLGCNKNMINTVLRFGKLAYAVKNITVLKNFTKRIIK" regulatory complement(2168617..2168622) /regulatory_class="ribosome_binding_site" /gene="rfbV" /locus_tag="STM2087" /note="putative RBS for rfbV; RegulonDB:STMS1H002235" gene complement(2168622..2169914) /gene="rfbX" /locus_tag="STM2088" /db_xref="GeneID:1253609" CDS complement(2168622..2169914) /gene="rfbX" /locus_tag="STM2088" /note="LPS side chain defect; putative O-antigen transporter. (SW:RFBX_SALTY)" /codon_start=1 /transl_table=11 /product="putative O-antigen transferase" /protein_id="NP_461033.1" /db_xref="GI:16765418" /db_xref="GeneID:1253609" /translation="MKVQLLKIPSHLIVAGSSWLSKIIIAGVQLASISYLISMLGEEK YAIFSLLTGLLVWCSAVDFGIGTGLQNYISECRAKNKSYDAYIKSALHLSFIAIIFFI ALFYIFSGVISAKYLSSFHEVLQDKTRMLFFTSCLVFSSIGIGAIAYKILFAELVGWK ANLLNALSYMIGMLGLLYIYYRGISVDIKLSLIVLYLPVGMISLCYIVYRYIKLYHVK TTKSHYIAILRRSSGFFLFTLLSIVVLQTDYMVISQRLTPADIVQYTVTMKIFGLVFF IYTAILQALWPICAELRVKQQWKKLNKMIGVNILLGSLYVVGCTIFIYLFKEQIFSVI AKDINYQVSILSFMLIGIYFCIRVWCDTYAMLLQSMNYLKILWILVPLQAIIGGIAQW YFSSTLGISGVLLGLIISFALTVFWGLPLTYLIKANKG" gene complement(2169996..2170901) /gene="rfbJ" /locus_tag="STM2089" /db_xref="GeneID:1253610" CDS complement(2169996..2170895) /gene="rfbJ" /locus_tag="STM2089" /note="LPS side chain defect; CDP-abequose synthase. (SW:RFBJ_SALTY)" /codon_start=1 /transl_table=11 /product="CDP-abequose synthase" /protein_id="NP_461034.1" /db_xref="GI:16765419" /db_xref="GeneID:1253610" /translation="MTFLKEYVIVSGASGFIGKHLLEALKKSGISVVAITRDVIKNNS NALANVRWCSWDNIELLVEELSIDSALIGIIHLATEYGHKTSSLINIEDANVIKPLKL LDLAIKYRADIFLNTDSFFAKKDFNYQHMRPYIITKRHFDEIGHYYANMHDISFVNMR LEHVYGPGDGENKFIPYIIDCLNKKQSCVKCTTGEQIRDFIFVDDVVNAYLTILENRK EVPSYTEYQVGTGAGVSLKDFLVYLQNTMMPGSSSIFEFGAIEQRDNEIMFSVANNKN LKAMGWKPNFDYKKGIEELLKRL" regulatory complement(2170896..2170901) /regulatory_class="ribosome_binding_site" /gene="rfbJ" /locus_tag="STM2089" /note="putative RBS for rfbJ; RegulonDB:STMS1H002236" gene complement(2170923..2172243) /gene="rfbH" /locus_tag="STM2090" /db_xref="GeneID:1253611" CDS complement(2170923..2172236) /gene="rfbH" /locus_tag="STM2090" /note="LPS side chain defect; lipopolysaccharide biosynthesis protein RFBH. (SW:RFBH_SALTY)" /codon_start=1 /transl_table=11 /product="lipopolysaccharide biosynthesis protein RfbH" /protein_id="NP_461035.1" /db_xref="GI:16765420" /db_xref="GeneID:1253611" /translation="MTANNLREQISQLVAQYANEALSPKPFVAGTSVVPPSGKVIGAK ELQLMVEASLDGWLTTGRFNDAFEKKLGEFIGVPHVLTTTSGSSANLLALTALTSPKL GERALKPGDEVITVAAGFPTTVNPAIQNGLIPVFVDVDIPTYNIDASLIEAAVTEKSK AIMIAHTLGNAFNLSEVRRIADKYNLWLIEDCCDALGTTYEGQMVGTFGDIGTVSFYP AHHITMGEGGAVFTKSGELKKIIESFRDWGRDCYCAPGCDNTCGKRFGQQLGSLPQGY DHKYTYSHLGYNLKITDMQAACGLAQLERVEEFVEQRKANFSYLKQGLQSCTEFLELP EATEKSDPSWFGFPITLKETSGVNRVELVKFLDEAKIGTRLLFAGNLIRQPYFANVKY RVVGELTNTDRIMNQTFWIGIYPGLTTEHLDYVVSKFEEFFGLNF" regulatory complement(2172238..2172243) /regulatory_class="ribosome_binding_site" /gene="rfbH" /locus_tag="STM2090" /note="putative RBS for rfbH; RegulonDB:STMS1H002237" gene complement(2172263..2173347) /gene="rfbG" /locus_tag="STM2091" /db_xref="GeneID:1253612" CDS complement(2172263..2173342) /gene="rfbG" /locus_tag="STM2091" /EC_number="4.2.1.45" /EC_number="1.1.1.44" /note="LPS side chain defect; CDP-glucose 4,6-dehydratase. (SW:RFBG_SALTY)" /codon_start=1 /transl_table=11 /product="CDP-glucose 4,6-dehydratase" /protein_id="NP_461036.1" /db_xref="GI:16765421" /db_xref="GeneID:1253612" /translation="MIDKNFWQGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAP TVPSLFEIVRLNDLMESHIGDIRDFEKLRNSIAEFKPEIVFHMAAQPLVRLSYEQPIE TYSTNVMGTVHLLETVKQVGNIKAVVNITSDKCYDNREWVWGYRENEPMGGYDPYSNS KGCAELVASAFRNSFFNPANYEQHGVGLASVRAGNVIGGGDWAKDRLIPDILRSFENN QQVIIRNPYSIRPWQHVLEPLSGYIVVAQRLYTEGAKFSEGWNFGPRDEDAKTVEFIV DKMVTLWGDDASWLLDGENHPHEAHYLKLDCSKANMQLGWHPRWGLTETLGRIVKWHK AWIRGEDMLICSKREISDYMSATTR" regulatory complement(2173342..2173347) /regulatory_class="ribosome_binding_site" /gene="rfbG" /locus_tag="STM2091" /note="putative RBS for rfbG; RegulonDB:STMS1H002238" gene complement(2173347..2174127) /gene="rfbF" /locus_tag="STM2092" /db_xref="GeneID:1253613" CDS complement(2173347..2174120) /gene="rfbF" /locus_tag="STM2092" /EC_number="2.7.7.33" /EC_number="1.1.1.44" /note="LPS side chain defect; glucose-1-phosphate cytidylyltransferase. (SW:RFBF_SALTY)" /codon_start=1 /transl_table=11 /product="glucose-1-phosphate cytidylyltransferase" /protein_id="NP_461037.1" /db_xref="GI:16765422" /db_xref="GeneID:1253613" /translation="MKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVH GIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGD SSMTGGRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPPGR FGALDIRAGQVRSFQEKPKGDGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQ GELMAFEHPGFWQPMDTLRDKVYLEGLWEKGKAPWKTWE" gene complement(2174117..2175109) /gene="rfbI" /locus_tag="STM2093" /db_xref="GeneID:1253614" CDS complement(2174117..2175109) /gene="rfbI" /locus_tag="STM2093" /note="LPS side chain defect; RFBI protein. (SW:RFBI_SALTY)" /codon_start=1 /transl_table=11 /product="CDP-6-deoxy-delta-3,4-glucoseen reductase" /protein_id="NP_461038.1" /db_xref="GI:16765423" /db_xref="GeneID:1253614" /translation="MSHIIKIFPSNIEFSGREDESILDAALSAGIHLEHSCKAGDCGI CESDLLAGEVVDSKGNIFGQGDKILTCCCKPKTALELNAHFFPELAGQTKKIVPCKVN SAVLVSGDVMTLKLRTPPTAKIGFLPGQYINLHYKGVTRSYSIANSDESNGIELHVRN VPNGQMSSLIFGELQENTLMRIEGPCGTFFIRESDRPIIFLAGGTGFAPVKSMVEHLI QGKCRREIYIYWGMQYSKDFYSALPQQWSEQHDNVHYIPVVSGDDAEWGGRKGFVHHA VMDDFDSLEFFDIYACGSPVMIDASKKDFMMKNLSVEHFYSDAFTASNNIEDNL" regulatory complement(2174122..2174127) /regulatory_class="ribosome_binding_site" /gene="rfbF" /locus_tag="STM2092" /note="putative RBS for rfbF; RegulonDB:STMS1H002239" gene complement(2175115..2175677) /gene="rfbC" /locus_tag="STM2094" /db_xref="GeneID:1253615" CDS complement(2175115..2175666) /gene="rfbC" /locus_tag="STM2094" /EC_number="5.1.3.13" /note="dTDP-4-dehydrorhamnose 3,5-epimerase. (SW:RFBC_SALTY)" /codon_start=1 /transl_table=11 /product="dTDP-4,deoxyrhamnose 3,5 epimerase" /protein_id="NP_461039.1" /db_xref="GI:16765424" /db_xref="GeneID:1253615" /translation="MMIVIKTAIPDVLILEPKVFGDERGFFFESYNQQTFEELIGRKV TFVQDNHSKSKKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGV NLSAENKRQLWIPEGFAHGFVTLSEYAEFLYKATNYYSPSSEGSILWNDEAIGIEWPF SQLPELSAKDAAAPLLDQALLTE" gene complement(2175667..2176551) /gene="rfbA" /locus_tag="STM2095" /db_xref="GeneID:1253616" CDS complement(2175667..2176545) /gene="rfbA" /locus_tag="STM2095" /EC_number="2.7.7.24" /note="glucose-1-phosphate thymidylyltransferase. (SW:RFBA_SALTY)" /codon_start=1 /transl_table=11 /product="glucose-1-phosphate thymidylyltransferase" /protein_id="NP_461040.1" /db_xref="GI:16765425" /db_xref="GeneID:1253616" /translation="MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTL MLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGH DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQKGTAVSL EEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMM GRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPL SKNDYGKYLLKMVKGL" regulatory complement(2175672..2175677) /regulatory_class="ribosome_binding_site" /gene="rfbC" /locus_tag="STM2094" /note="putative RBS for rfbC; RegulonDB:STMS1H002240" regulatory complement(2176546..2176551) /regulatory_class="ribosome_binding_site" /gene="rfbA" /locus_tag="STM2095" /note="putative RBS for rfbA; RegulonDB:STMS1H002241" gene complement(2176593..2177505) /gene="rfbD" /locus_tag="STM2096" /db_xref="GeneID:1253617" CDS complement(2176593..2177492) /gene="rfbD" /locus_tag="STM2096" /EC_number="1.1.1.133" /note="DTDP-4-dehydrorhamnose reductase. (SW:RFBD_SALTY)" /codon_start=1 /transl_table=11 /product="dTDP-4-dehydrorhamnose reductase" /protein_id="NP_461041.1" /db_xref="GI:16765426" /db_xref="GeneID:1253617" /translation="MNILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPK GVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHY STDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVYAGKGN NFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAG GTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFD LILPQWELGVKRMLTEMFTTTTI" gene complement(2177492..2178590) /gene="rfbB" /locus_tag="STM2097" /db_xref="GeneID:1253618" CDS complement(2177492..2178577) /gene="rfbB" /locus_tag="STM2097" /EC_number="4.2.1.46" /note="DTDP-glucose 4,6-dehydratase. (SW:RFBB_SALTY)" /codon_start=1 /transl_table=11 /product="dTDP-glucose 4,6-dehydratase" /protein_id="NP_461042.1" /db_xref="GI:16765427" /db_xref="GeneID:1253618" /translation="MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLS DISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIV GTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTA YAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEG KPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDL LDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWY LANTQWVNNVKSGAYQSWIEQNYEGRQ" regulatory complement(2177500..2177505) /regulatory_class="ribosome_binding_site" /gene="rfbD" /locus_tag="STM2096" /note="putative RBS for rfbD; RegulonDB:STMS1H002242" regulatory complement(2178585..2178590) /regulatory_class="ribosome_binding_site" /gene="rfbB" /locus_tag="STM2097" /note="putative RBS for rfbB; RegulonDB:STMS1H002243" gene complement(2178954..2179862) /gene="galF" /locus_tag="STM2098" /db_xref="GeneID:1253619" CDS complement(2178954..2179847) /gene="galF" /locus_tag="STM2098" /EC_number="2.7.7.9" /note="UTP--glucose-1-phosphate uridylyltransferase. (SW:GALF_SALTY)" /codon_start=1 /transl_table=11 /product="GalU regulator GalF" /protein_id="NP_461043.1" /db_xref="GI:16765428" /db_xref="GeneID:1253619" /translation="MMNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEI VAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNV RQAQPLGLGHSILCARPVVGDNPFIVVLPDIIIDDATADPLRYNLAAMVARFNETGRS QVLAKRMKGDLSEYSVIQTKEPLDNEGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLS ADIWAELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY GLRNLKEGAKFRKSIEQLLHE" regulatory complement(2179857..2179862) /regulatory_class="ribosome_binding_site" /gene="galF" /locus_tag="STM2098" /note="putative RBS for galF; RegulonDB:STMS1H002244" gene complement(2180025..2181436) /gene="wcaM" /locus_tag="STM2099" /db_xref="GeneID:1253620" CDS complement(2180025..2181428) /gene="wcaM" /locus_tag="STM2099" /note="colanic acid biosynthesis protein WCAM. (SW:WCAM_SALTY)" /codon_start=1 /transl_table=11 /product="colanic acid biosynthesis protein WcaM" /protein_id="NP_461044.1" /db_xref="GI:16765429" /db_xref="GeneID:1253620" /translation="MPATKFSRRTLLTAGSALAVLPFLRALPVQAREPRETVDIKDYP ADDGIASFKQAFADGQTVVVPPGWVCENINAAITIPAGKTLRVQGAVRGNGRGRFILQ DGCQVVGEQGGSLHNVTLDVRGSDCVIKGVAMSGFGPVAQIFIGGKEPQVMRNLIIDD ITVTHANYAILRQGFHNQMDGARITHSRFSDLQGDAIEWNVAIHDRDILISDHVIERI NCTNGKINWGIGIGLAGSTYDNSYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIR NVKAKNITPGFSKNAGIDNATIAIYGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIP QNFKLNAIRLDNRQVAYKLRGIQISSGNTPSFVAITNVRMTRATLELHNQPQHLFLRN INVMQTSAIGPALKMHFDLRKDVRGQFMARQDTLLSLANVHAINENGQSSVDIDRINH QTVNVEAVNFSLPKRGG" regulatory complement(2181431..2181436) /regulatory_class="ribosome_binding_site" /gene="wcaM" /locus_tag="STM2099" /note="putative RBS for wcaM; RegulonDB:STMS1H002245" gene complement(2181439..2182667) /gene="wcaL" /locus_tag="STM2100" /db_xref="GeneID:1253621" CDS complement(2181439..2182659) /gene="wcaL" /locus_tag="STM2100" /note="in colanic acid gene cluster; putative colanic acid biosynthesis glycosyl transferase WCAL. (SW:WCAL_SALTY)" /codon_start=1 /transl_table=11 /product="colanic acid biosynthesis glycosyltransferase WcaL" /protein_id="NP_461045.1" /db_xref="GI:16765430" /db_xref="GeneID:1253621" /translation="MKVSFFLLKFPLSSETFVLNQITAFIDMGHEVEIVALQKGDTQH THAAWEKYGLAAKTRWLQDEPQGRLAKLRYRACKTLPGLHRAATWKALNFTRYGDESR NLILSAICAQVSQPFVADVFIAHFGPAGVTAAKLRELGVLRGKIATIFHGIDISSREV LSHYTPEYQQLFRRGDLMLPISDLWAGRLKSMGCPPEKIAVSRMGVDMTRFTHRSVKA PGMPLEMISVARLTEKKGLHVAIEACRQLKAQGVAFRYRILGIGPWERRLRTLIEQYQ LEDVIEMPGFKPSHEVKAMLDDADVFLLPSITGTDGDMEGIPVALMEAMAVGIPVVST VHSGIPELVEAGKSGWLVPENDAQALAARLAEFSRIDHDTLESVITRAREKVAQDFNQ QAINRQLASLLQTI" gene complement(2182656..2183946) /gene="wcaK" /locus_tag="STM2101" /db_xref="GeneID:1253622" CDS complement(2182656..2183936) /gene="wcaK" /locus_tag="STM2101" /note="in colanic acid gene cluster; similar to E. coli putative galactokinase. (AAC75106.1); Blastp hit to AAC75106.1 (426 aa), 67% identity in aa 1 - 426" /codon_start=1 /transl_table=11 /product="colanic acid biosynthesis pyruvyl transferase WcaK" /protein_id="NP_461046.1" /db_xref="GI:16765431" /db_xref="GeneID:1253622" /translation="MKLLILGNHTCGNRGDSAIMRGLLDAIRQQAPEAEMDVMSRFPV SSAWLQGRPIIADPLYQLSQKQQAAAGLNGRVKKVLRRRFQHKILLSKVAQEGSLRNF AIAPEFAEFAQFIAQYDAVIQVGGSNYVDLYGLTHFEYPLCAFMANKPIYMVGHSVGP FQNPDFNQLANYVFGRTSALILRETVSRDLMTAAQIDTRKVEQGVDTAWLVERRHDEF VASYAVQHWLDVTARRKTVAITLRDLEPFDKRLGTTQQAYEQAFAQVVNRLIADGYQV LALSTCTSIDRYNRDDRMVALRMAKYVNDSENFHIAMDELNDVEIGKILASCVLTIGT RLHSAIISMNFGTPAIAINYEHKSAGIMQQLGLAELAIDIRHLLNGSLQSVVADTLNQ LPALKAKVANAVTEERAKGFTMIKSVLDRIREAQ" regulatory complement(2182662..2182667) /regulatory_class="ribosome_binding_site" /gene="wcaL" /locus_tag="STM2100" /note="putative RBS for wcaL; RegulonDB:STMS1H002246" regulatory complement(2183941..2183946) /regulatory_class="ribosome_binding_site" /gene="wcaK" /locus_tag="STM2101" /note="putative RBS for wcaK; RegulonDB:STMS1H002247" gene complement(2183958..2185448) /gene="wzxC" /locus_tag="STM2102" /db_xref="GeneID:1253623" CDS complement(2183958..2185436) /gene="wzxC" /locus_tag="STM2102" /note="in colanic acid gene cluster; similar to E. coli probable export protein (AAC75107.1); Blastp hit to AAC75107.1 (492 aa), 85% identity in aa 1 - 492" /codon_start=1 /transl_table=11 /product="colanic acid exporter" /protein_id="NP_461047.1" /db_xref="GI:16765432" /db_xref="GeneID:1253623" /translation="MSLRQKTISGAKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLL TVSLVIIALADTISDFGIANSIIQRKTIGHLELTTLYWLNVGLGIVVFAVVFWLSDAI AHVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTV ISAHYWPLALTAILGYLVNSAVRTLLFGYFGRKIYRPGLHFSLASVSTNLRFGAWLTA DSIVNYINTNLSTLVLARILGASVAGGYNLAYNVAVVPPAKLNPIITRVLFPAFAKIQ DDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVFGEKWNSIIPILQLLCVVG LLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGAIGVTLGFLVVQI INTILSYFVMIKPVLGSSYRQYILSLWLPFYLSLPTFITSYGAGKLVDGYLPLSGVFA LQVMVGILSFILMIIFSRNALVMEIKNQLVGSAKMKKLLRVG" regulatory complement(2185443..2185448) /regulatory_class="ribosome_binding_site" /gene="wzxC" /locus_tag="STM2102" /note="putative RBS for wzxC; RegulonDB:STMS1H002248" gene complement(2185569..2186974) /gene="wcaJ" /locus_tag="STM2103" /db_xref="GeneID:1253624" CDS complement(2185569..2186963) /gene="wcaJ" /locus_tag="STM2103" /note="in colanic acid gene cluster; similar to E. coli putative colanic acid biosynthsis UDP-glucose lipid carrier transferase (AAC75108.1); Blastp hit to AAC75108.1 (464 aa), 89% identity in aa 1 - 464" /codon_start=1 /transl_table=11 /product="undecaprenyl-phosphate glucose phosphotransferase" /protein_id="NP_461048.1" /db_xref="GI:16765433" /db_xref="GeneID:1253624" /translation="MTNLKKRERAKTNASLISMVQRFSDITIMFGGLWFICEVSGLPF LYMHLLVALITLVVFQMLGGITDFYRSWRGVKMSTELTLLLQNWTLSLIFSAGLVAFN DDFDNRLATWLAWYALSSLGLVLCRSFIRFGAGWLRNRGYNTRRVAVAGDLPAGQALL DSFRNEPWLGFEVVGVYHDPKPGGVSADWAGNFEQLIDDAKASRIHNVYIAMSMSDGA MVKKLVRELADTTCSVILIPDVFTFNILHSRVEEMSGVPVVPLYDTPLSGINRLLKRA EDIVLASLILLLISPVLCCIALAVKLSSPGPVIFRQTRYGMDGKPIKVWKFRSMKVME NDKVVTQATQNDPRVTRVGNFLRRTSLDELPQFINVLTGGMSIVGPRPHAVAHNEQYR QLIEGYMLRHKMKPGITGWAQINGWRGETDTLEKMEKRVEFDLEYIREWSIWFDIKIV FLTIFKGFVNKAAY" regulatory complement(2186969..2186974) /regulatory_class="ribosome_binding_site" /gene="wcaJ" /locus_tag="STM2103" /note="putative RBS for wcaJ; RegulonDB:STMS1H002249" gene complement(2187017..2188399) /gene="cpsG" /locus_tag="STM2104" /db_xref="GeneID:1253625" CDS complement(2187017..2188387) /gene="cpsG" /locus_tag="STM2104" /EC_number="5.4.2.8" /note="in colanic acid gene cluster; phosphomannomutase. (SW:MANB_SALTY)" /codon_start=1 /transl_table=11 /product="phosphomannomutase" /protein_id="NP_461049.1" /db_xref="GI:16765434" /db_xref="GeneID:1253625" /translation="MTKLTCFKAYDIRGRLGEELNEDIAWRIGRAYGEYLKPKTVVLG GDVRLTSEALKLALAKGLQDAGVDVLDIGMSGTEEIYFATFHLGVDGGIEVTASHNPM DYNGMKLVREGARPISGDTGLRDVQRLAEAGDFPPVNEAARGSYRQISLRDAYIDHLL GYISVNNLTPLKLVFNAGNGAAGPVIDAIEARLKALGAPVEFIKIHNTPDGTFPNGIP NPLLPECRDDTRKAVIEHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLE KHPGAKIIHDPRLTWNTEAVVTAAGGTPVMSKTGHAFIKERMRTEDAIYGGEMSAHHY FRDFAYCDSGMIPWLLVAELVCLKRQSLGELVRDRMAAFPASGEINSRLAEPAAAIAR VEAHFAEEAQAVDRTDGLSMSFADWRFNLRSSNTEPVVRLNVESRGDIPLMEARTRTL LALLNQ" regulatory complement(2188394..2188399) /regulatory_class="ribosome_binding_site" /gene="cpsG" /locus_tag="STM2104" /note="putative RBS for cpsG; RegulonDB:STMS1H002250" gene complement(2188498..2189946) /gene="manC" /locus_tag="STM2105" /db_xref="GeneID:1253626" CDS complement(2188498..2189940) /gene="manC" /locus_tag="STM2105" /EC_number="2.7.7.22" /note="in colanic acid gene cluster; mannose-1-phosphate guanylyltransferase (GDP). (SW:MANC_SALTY)" /codon_start=1 /transl_table=11 /product="mannose-1-phosphate" /protein_id="NP_461050.3" /db_xref="GI:1109557676" /db_xref="GeneID:1253626" /translation="MIMRQTKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQ TTICRLNGVECESPLVICNEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAAL AATRQHTDCDPLMLVLAADHAIANEEAFRDAVRGAMPYADAGKLVTFGIVPDLPETGY GYIRRGDVVPGATDAVAFEVAQFVEKPGLETAQAYVASGDYYWNSGMFLFRAGRYLEE LKKFRPDILAACEQAMRGVDPDLDFIRVDEEAFLACPEESIDYAVMERTADAVVMPMD AGWSDVGSWSSLWEISAHTPEGNVHHGDVISHKTENSYVYAESGLVTTVGVKDLVVVQ TKDAVLIADRHAVQDVKKVVEKIKADGRHEHHMHREVYRPWGKYDSIDAGERYQVKRI TVKPGEGLSVQMHHHRAEHWVVVAGTARVTINGEVKLLGENESIYIPLGATHCLENPG KIPLDLIEVRSGSYLEEDDVVRFEDRYGRV" gene complement(2189937..2191171) /gene="wcaI" /locus_tag="STM2106" /db_xref="GeneID:1253627" CDS complement(2189937..2191160) /gene="wcaI" /locus_tag="STM2106" /note="in colanic acid gene cluster; similar to E. coli putative colanic biosynthesis glycosyl transferase (AAC75111.1); Blastp hit to AAC75111.1 (407 aa), 85% identity in aa 1 - 407" /codon_start=1 /transl_table=11 /product="putative glycosyl transferase" /protein_id="NP_461051.1" /db_xref="GI:16765436" /db_xref="GeneID:1253627" /translation="MKILVYGINYSPELTGIGKYTGEMVAWMAQEGHEVRVITAPPYY PQWKVGERYSAWRYRREEGEATVWRCPLYVPKQPSTLKRLLHLGSFALSSFFPLMAQR RWKPDRIIGVVPTLFCTPGMRLLATLSGARTVLHIQDYEVDAMLGLGMAGKGKRGSVA RLATAFERSALRNVDNVSTISRSMMNKAREKGVAAEKILFFPNWSEVARFQDVNDADV TALRQQLGLPEGKKIVLYSGNIGEKQGLEKVIDAAERLRDRPLIFAIVGQGGGKARLE NMARERGLANIKFLPLQPYDALPALLKMGDCHLVVQKRGAADAVLPSKLTNILAVGGN AVITAEPHTELGQLCARYPGIAVCVEPESTDALVNGISQALAMPKNNTTAREYAERTL NKENVLRQFIADIRG" regulatory complement(2189941..2189946) /regulatory_class="ribosome_binding_site" /gene="wcaI" /locus_tag="STM2106" /note="putative RBS for manC; RegulonDB:STMS1H002251" gene complement(2191157..2191630) /gene="wcaH" /locus_tag="STM2107" /db_xref="GeneID:1253628" CDS complement(2191157..2191630) /gene="wcaH" /locus_tag="STM2107" /codon_start=1 /transl_table=11 /product="GDP-mannose mannosyl hydrolase" /protein_id="NP_461052.3" /db_xref="GI:1127432618" /db_xref="GeneID:1253628" /translation="MFLRQEDFAAVVRATPLISLDFIVENGQGEILLGQRLNRPAQGY WFVPGGRVCKDETLEAAFARLTQAELGVRLPLAAGTFYGVWQHFYDDNFSGEDFSTHY IVLGFRLRVAESDLRLPDAQHGSYRWLTPEQLLASDNVHENSRAYFSPDAPAVGL" regulatory complement(2191166..2191171) /regulatory_class="ribosome_binding_site" /gene="wcaH" /locus_tag="STM2107" /note="putative RBS for wcaI; RegulonDB:STMS1H002252" gene complement(2191633..2192612) /gene="wcaG" /locus_tag="STM2108" /db_xref="GeneID:1253629" CDS complement(2191633..2192598) /gene="wcaG" /locus_tag="STM2108" /EC_number="1.-.-.-" /EC_number="5.-.-.-" /note="in colanic acid gene cluster; similar to E. coli putative nucleotide di-P-sugar epimerase or dehydratase (AAC75113.1); Blastp hit to AAC75113.1 (321 aa), 90% identity in aa 1 - 321" /codon_start=1 /transl_table=11 /product="GDP-fucose synthetase" /protein_id="NP_461053.1" /db_xref="GI:16765438" /db_xref="GeneID:1253629" /translation="MNKQRIFVAGHRGMVGSAIVRQLAQRGDVELVLRTRDELDLLDG RAVQAFFAGAGIDQVYLAAAKVGGIVANNTYPADFIYENMMIESNIIHAAHLHNVNKL LFLGSSCIYPKLARQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRS VMPTNLYGPHDNFHPDNSHVIPALLRRFHEAAQSHAPEVVVWGSGTPMREFLHVDDMA AASIHVMELAREVWQENTAPMLSHINVGTGVDCTIRELAQTIAKVVGYQGRVVFDAAK PDGTPRKLLDVTRLHQLGWYHEISLEAGLAGTYQWFLENQQRFRG" regulatory complement(2191664..2191669) /regulatory_class="ribosome_binding_site" /gene="wcaG" /locus_tag="STM2108" /note="putative RBS for wcaH; RegulonDB:STMS1H002253" gene complement(2192601..2193734) /gene="gmd" /locus_tag="STM2109" /db_xref="GeneID:1253630" CDS complement(2192601..2193722) /gene="gmd" /locus_tag="STM2109" /EC_number="4.2.1.47" /note="in colanic acid gene cluster; similar to E. coli GDP-D-mannose dehydratase (AAC75114.1); Blastp hit to AAC75114.1 (373 aa), 96% identity in aa 1 - 373" /codon_start=1 /transl_table=11 /product="GDP-mannose 4,6-dehydratase" /protein_id="NP_461054.1" /db_xref="GI:16765439" /db_xref="GeneID:1253630" /translation="MSKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERV DHIYQDPHSCNPKFHLHYGDLTDASNLTRILQEVQPDEVYNLGAMSHVAVSFESPEYT ADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVA KLYAYWITVNYRESYGIYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL GNMDSLRDWGHAKDYVRMQWMMLQQEQPEDFVIATGVQYSVRQFVELAAAQLGIKLRF EGEGINEKGIVVSVTGHDAPGVKPGDVIVAVDPRYFRPAEVETLLGDPSKAHEKLGWK PEITLSEMVSEMVANDLEAAKKHSLLKSHGYEVAIALES" regulatory complement(2192607..2192612) /regulatory_class="ribosome_binding_site" /gene="wcaG" /locus_tag="STM2108" /note="putative RBS for wcaG; RegulonDB:STMS1H002254" regulatory complement(2193729..2193734) /regulatory_class="ribosome_binding_site" /gene="gmd" /locus_tag="STM2109" /note="putative RBS for gmd; RegulonDB:STMS1H002255" gene complement(2193746..2194312) /gene="wcaF" /locus_tag="STM2110" /db_xref="GeneID:1253631" CDS complement(2193746..2194300) /gene="wcaF" /locus_tag="STM2110" /EC_number="2.3.1.-" /note="in colanic acid gene cluster; similar to E. coli putative transferase (AAC75115.1); Blastp hit to AAC75115.1 (182 aa), 87% identity in aa 1 - 180" /codon_start=1 /transl_table=11 /product="colanic acid biosynthesis acetyltransferase WcaF" /protein_id="NP_461055.1" /db_xref="GI:16765440" /db_xref="GeneID:1253631" /translation="MQDLSGFTVPKGFRGANALKVQLWWAVQATLFAGSPQILYRWRA FLLRLFGAKIGKNVVIRPSVKITYPWKLTVGDYAWVGDDAVLYTLGEINIGAHAVISQ KGYLCTGSHDYTSAHFDINAAPIVIGEKCWLATDVFVAPGVTIGHGTVVGARSSVFKS LPANAICRGNPAVVTRQRVQKVTP" regulatory complement(2194307..2194312) /regulatory_class="ribosome_binding_site" /gene="wcaF" /locus_tag="STM2110" /note="putative RBS for wcaF; RegulonDB:STMS1H002256" gene complement(2194316..2195070) /gene="wcaE" /locus_tag="STM2111" /db_xref="GeneID:1253632" CDS complement(2194316..2195062) /gene="wcaE" /locus_tag="STM2111" /note="in colanic acid gene cluster; similar to E. coli putative colanic acid biosynthesis glycosyl transferase (AAC75116.1); Blastp hit to AAC75116.1 (248 aa), 71% identity in aa 1 - 248" /codon_start=1 /transl_table=11 /product="colanic acid biosynthesis glycosyltransferase WcaE" /protein_id="NP_461056.1" /db_xref="GI:16765441" /db_xref="GeneID:1253632" /translation="MFLSVVTVAFRNYEGVVKTWRSLRNLARDPGLSFEWIVVDGGSE DGTREFLRKRHGEFNLRFISEKDRGIYDAMNKGIALAQGRYTLFLNSGDAFHDDAALF VRQLARQKGEAMYIGDALLDFGGGHKIRRKAKPGYYIYHSLPASHQAIFFPTAALKKY PYDLQYHVSSDYALAARLYKAGYPFRRINGLVSEFSMGGVSTSNNLELCQDAKNVQRK ILRVPGFWAQLSYLLRLKTTGKTKARYNKV" regulatory complement(2195065..2195070) /regulatory_class="ribosome_binding_site" /gene="wcaE" /locus_tag="STM2111" /note="putative RBS for wcaE; RegulonDB:STMS1H002257" gene complement(2195075..2196296) /gene="wcaD" /locus_tag="STM2112" /db_xref="GeneID:1253633" CDS complement(2195075..2196289) /gene="wcaD" /locus_tag="STM2112" /note="similar to E. coli putative colanic acid polymerase (AAC75117.1); Blastp hit to AAC75117.1 (405 aa), 93% identity in aa 1 - 404" /codon_start=1 /transl_table=11 /product="colanic acid polymerase WcaD" /protein_id="NP_461057.1" /db_xref="GI:16765442" /db_xref="GeneID:1253633" /translation="MSRSIRICSYLLLPLIYLLVNVKIAQLGESFPITIVTFLPLLLL LFVERISVKKLMIALGIGAGLTAFNFLFGQSLNAGKYVTSTMLFVYIVVIIGMVWSIR FKTISAHNHRKILRFFYLVVGMVVALAAVEMAQIILTGGSSIMEGISKYLIYSNSYVL NFIKFGGKRTTALYFEPAFFALALISIWLSIKQFGIKTPKSDAMILAGIILSGSFSGV MTFILFYLLEWAFQYLNKDAIKKKLPLALVSLTLFLVGVIIAFPYIATRLGDLGTEGS SSYYRIVGPLVMVGYSLTHIDGVVRFGSLYEYVASFGIFNGADVGKTIDNGLYLLIIY FSWFAVLMTLWYMGKVLKMALNAFGDNRNFRVQLYLFTPVSLFFTGSIFSPEYAFLIV CPFILRKALKIS" gene complement(2196264..2197492) /gene="wcaC" /locus_tag="STM2113" /db_xref="GeneID:1253634" CDS complement(2196264..2197481) /gene="wcaC" /locus_tag="STM2113" /note="in colanic acid gene cluster; similar to E. coli putative glycosyl transferase (AAC75118.1); Blastp hit to AAC75118.1 (405 aa), 80% identity in aa 1 - 405" /codon_start=1 /transl_table=11 /product="colanic acid biosynthesis glycosyltransferase WcaC" /protein_id="NP_461058.1" /db_xref="GI:16765443" /db_xref="GeneID:1253634" /translation="MNILQFNVRLAEGGAAGVALDLHLRALQKGLTSHFVYGYGKGGK KSVSHHRYPQVIKQTPRGTAIANIALFRFLNRDLFGNLDNLYRTVIQTSGPLVLHFHV LHSYWLNLADIVTFCEKVKAQKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKSGCQKCP TLSNYPPVRVDRAHQLIDGKRQRFRDMLRLGCRFISPSQHVAEAFNSVYGAGRCQIIN NGIDLATEAILAQLSPVPLNPGKPRIAIVAHDLRYDGKTDQRLVHDMMALGEKIELHT FGKFSPFTGQNVVNHGFETDKRKLMSALNEMDALVFSSRVDNYPLILCEALSIGVPVI ATHSEAAQEVLAKSGGQTFAATDVLRLAQRRKPEIAQAVFGATLDAFRMRSRVAYSGQ QMLEEYVSFYQNL" regulatory complement(2196291..2196296) /regulatory_class="ribosome_binding_site" /gene="wcaD" /locus_tag="STM2112" /note="putative RBS for wcaD; RegulonDB:STMS1H002258" gene complement(2197478..2197981) /gene="wcaB" /locus_tag="STM2114" /db_xref="GeneID:1253635" CDS complement(2197478..2197966) /gene="wcaB" /locus_tag="STM2114" /EC_number="2.3.1.-" /note="in colanic acid gene cluster; similar to E. coli putative transferase (AAC75119.1); Blastp hit to AAC75119.1 (162 aa), 91% identity in aa 1 - 160" /codon_start=1 /transl_table=11 /product="colanic acid biosynthesis acetyltransferase WcaB" /protein_id="NP_461059.1" /db_xref="GI:16765444" /db_xref="GeneID:1253635" /translation="MLEDLRANSWSLRPCCMVLAYRIAHFCSVWRKKNVLNNLWAAPV LVLYRVITECLFGYEIQAAATIGRRFTIHHGYAVVINKHVVAGDDFTIRHGVTIGNRG ADSLACPVIGNGVELGANVILLGDITIGNHVTIGAGSVVLDSIPDHALVVGEKARVKV ST" regulatory complement(2197487..2197492) /regulatory_class="ribosome_binding_site" /gene="wcaB" /locus_tag="STM2114" /note="putative RBS for wcaC; RegulonDB:STMS1H002259" gene complement(2197969..2198824) /gene="wcaA" /locus_tag="STM2115" /db_xref="GeneID:1253636" CDS complement(2197969..2198811) /gene="wcaA" /locus_tag="STM2115" /note="in colanic acid gene cluster; similar to E. coli putative regulator (AAC75120.1); Blastp hit to AAC75120.1 (279 aa), 91% identity in aa 3 - 279" /codon_start=1 /transl_table=11 /product="colanic acid biosynthesis glycosyltransferase WcaA" /protein_id="NP_461060.1" /db_xref="GI:16765445" /db_xref="GeneID:1253636" /translation="MTTDNPLISIYMPTWNRQQLAIRAIKSVLRQDYRHWEMIIVDDC SSSYQQLQQFVEELNDPRVRYTHNARNTGACAVRNQAIMQAQGHYITGIDDDDEWTPN RLSVFLAHKHQLTTHAFLYANDYVCEGEVYSQPASLPLYPKSPYSRRLFYKRNIIGNQ VFTWAWRFKACLFDTELKAAQDYDIFLRMVVEYGEPWKVEEATQILHINHGEMQITSS PKKFSGYFHFYRKHKDKFDRASKKYQLFTLYQIRNKRMTWRTLLTLLSVRNSKRLAAG LRGR" regulatory complement(2197976..2197981) /regulatory_class="ribosome_binding_site" /gene="wcaB" /locus_tag="STM2114" /note="putative RBS for wcaB; RegulonDB:STMS1H002260" regulatory complement(2198819..2198824) /regulatory_class="ribosome_binding_site" /gene="wcaA" /locus_tag="STM2115" /note="putative RBS for wcaA; RegulonDB:STMS1H002261" gene complement(2198898..2201068) /gene="wzc" /locus_tag="STM2116" /db_xref="GeneID:1253637" CDS complement(2198898..2201057) /gene="wzc" /locus_tag="STM2116" /note="colanic acid export; similar to E. coli orf, hypothetical protein (AAC75121.1); Blastp hit to AAC75121.1 (732 aa), 87% identity in aa 13 - 732" /codon_start=1 /transl_table=11 /product="putative tyrosine-protein kinase" /protein_id="NP_461061.1" /db_xref="GI:16765446" /db_xref="GeneID:1253637" /translation="MTEKAKQSAAVTGSDEIDIGRLVGTVIEARWWVLGTTAIFALCA VIYTFFATPIYSADALVQIEQNAGNSLVQDINSALANKPPASDAEIQLIRSRLVLGKT VDDLDLDIAVTKNTFPLFGAGWERLMGRHNEMVKVTTFTRPETMSGQIFTLKVLGDKR YQLVSDGGFSAQGVVGQPLNKDGVTMRVEAIDARPDTEFTVSKFSTLGMINNLQNNLT VTETGKDTGVLSLTFTGEDRDQIREILNSITRNYLQQDIARKSEEAGKSLAFLAKQLP EVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLFT KAHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQ QELKITEASTVGDVRIVDPAITQPGVLKPKKALIILGSIILGLMLSIVGVLLRSLFNR GIESPQALEEHGISVYASIPLSEWQKARDSVKTIKGIKRYKQSQLLAVGNPTDLAIEA IRSLRTSLHFAMMQAQNNVLMLTGVSPSIGKTFVCANLAAVISQTHKRVLLIDCDMRK GYTHELLGTNNVDGLSDILAGKGEIASCAKPTAIANFDLIPRGQVPPNPSELLMSERF GELIAWASSRYDLVLIDTPPILAVTDAAIVGRHAGTTLMVARYAVNTLKEVETSLSRF DQNGIQVKGVILNSIFRRATGYQDYGYYEYEYQSDSK" gene complement(2201054..2201515) /gene="wzb" /locus_tag="STM2117" /db_xref="GeneID:1253638" CDS complement(2201054..2201503) /gene="wzb" /locus_tag="STM2117" /EC_number="3.1.3.48" /note="colanic acid export; similar to E. coli probable protein-tyrosine-phosphatase (AAC75122.1); Blastp hit to AAC75122.1 (147 aa), 83% identity in aa 1 - 146" /codon_start=1 /transl_table=11 /product="protein tyrosine phosphatase" /protein_id="NP_461062.1" /db_xref="GI:16765447" /db_xref="GeneID:1253638" /translation="MFNKILVVCVGNVCRSPTAERLLKRFHPSLTVASAGLGALVGKG ADPAAASVASAHDLSLENHCARQISARLCREYDLILTMEKRHIAALCDIAPEMRGKVM LFGHWDSEREIPDPYRKSRDAFEAVYTLLERSARQWAQALNAEQGKP" regulatory complement(2201063..2201068) /regulatory_class="ribosome_binding_site" /gene="wzb" /locus_tag="STM2117" /note="putative RBS for wzc; RegulonDB:STMS1H002262" gene complement(2201509..2202775) /gene="wza" /locus_tag="STM2118" /db_xref="GeneID:1253639" CDS complement(2201509..2202648) /gene="wza" /locus_tag="STM2118" /note="outer membrane; similar to E. coli putative polysaccharide export protein (AAC75123.1); Blastp hit to AAC75123.1 (379 aa), 93% identity in aa 1 - 379" /codon_start=1 /transl_table=11 /product="polysaccharide exporter Wza" /protein_id="NP_461063.1" /db_xref="GI:16765448" /db_xref="GeneID:1253639" /translation="MMKSKMKLMPLLASLSLISGCTVLPGSNMSTMGKDVIKQQDADF DLDRMVNVYPLTPRLVEQLRPRPNVAQPNMSLDQEIASYQYRVGPGDVLNVTVWDHPE LTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVSVVGKTLSEIRSDITGRLAKYIADPQ VDVNIAAFRSQKAYISGQVNKSGQQAITNVPLTVLDAINAAGGLTDMADWRNVVLTHN GKEQRISLQALMQNGDLSQNRLLYPGDILYVPRNDDLKVFVMGEVKKQSTLKMDFSGM TLTEALGNAEGIDLTTSNASGIFVIRPLKGEGGRGGKIANIYQLDMSDATSLVMATEF RLQPYDVVYVTTAPVARWNRLINQLLPTISGVRYMTDTASDIHSW" regulatory complement(2201510..2201515) /regulatory_class="ribosome_binding_site" /gene="wzb" /locus_tag="STM2117" /note="putative RBS for wzb; RegulonDB:STMS1H002263" regulatory complement(2202748..2202756) /regulatory_class="minus_10_signal" /gene="wza" /locus_tag="STM2118" /note="putative -10_signal for wza; RegulonDB:STMLTH004524" regulatory complement(2202767..2202775) /regulatory_class="minus_35_signal" /gene="wza" /locus_tag="STM2118" /note="putative -35_signal for wza; RegulonDB:STMLTH004524" gene 2203306..2204903 /gene="yegH" /locus_tag="STM2119" /db_xref="GeneID:1253640" regulatory 2203306..2203311 /regulatory_class="ribosome_binding_site" /gene="yegH" /locus_tag="STM2119" /note="putative RBS for yegH; RegulonDB:STMS1H002264" CDS 2203323..2204903 /gene="yegH" /locus_tag="STM2119" /note="similar to E. coli putative transport protein (AAC75124.1); Blastp hit to AAC75124.1 (549 aa), 90% identity in aa 23 - 549" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461064.1" /db_xref="GI:16765449" /db_xref="GeneID:1253640" /translation="MEWIADPSIWAGLVTLIVIELVLGIDNLVFIAILAEKLPPGQRD RARITGLILAMIMRLLLLASISWLVTLTKPLFSVQALSFSARDLIMLFGGFFLLFKAT MELNERLEGKDSANPTQRKGAKFWAVVAQIVVLDAIFSLDSVITAVGMVDHLAVMMAA VIIAISLMLLASKSLTRFVNNHPTIVILCLSFLLMIGFSLVAEGFGFHIPKGYLYAAI GFSVMIEALNQLAIFNRRRFLSANHTLRQRTTEAVMRLISGKKEDAELDAETAAMLAD HDDSQIFNPQERRMIERVLNLNQRTVSSIMTSRHDIEHIDLNAPEAEIRALLEKNQHT RLVVTGENEQEDLLGVVHVIDLLQQSLRGEPLNLRALIRQPLVFPETLPLLPALEQFR NARTHFAFVVDEFGSVEGIVTLSDVMETIAGNLPNEVEEIDARHDIQKNPDGSWTANG HMPLEDLVQYVPLPLDEKREYHTIAGLLMEYLQRIPQTGEEVQVGDYLLKTLQVESHR VQKVQLIPLHNGEPDQEM" gene complement(2204989..2206854) /gene="asmA" /locus_tag="STM2120" /db_xref="GeneID:1253641" CDS complement(2204989..2206845) /gene="asmA" /locus_tag="STM2120" /note="similar to E. coli suppressor of ompF assembly mutants (AAC75125.1); Blastp hit to AAC75125.1 (617 aa), 76% identity in aa 1 - 617" /codon_start=1 /transl_table=11 /product="outer membrane assembly protein AsmA" /protein_id="NP_461065.1" /db_xref="GI:16765450" /db_xref="GeneID:1253641" /translation="MRRFLTTLMILLVVLVAGFSALVLLVNPNDFRAYMVQQVAARSE YQLQLDGPLRWHVWPQLSILSGRMTLTARGASEPLVRADNMRLDVALWPLLSHQLHVK QVMLKGGVIQLTPQTEAVRSDDAPVAPKDNTLPDVAEDRGWSFDIRSLRVADSVLVFQ HENDDQVTVRDIRLNMEQDAEHRGTFDFSGRVNRDQRDLALSFSGTVDASDYPHNLTA GIEQLRWQLQGADLPAQGIEGQGQLQAQWQEAQKRLSFNHLNLTANDSSLTGQVQVTL AEQPEWQIDLQSSKLNLDNLLPHHSAVAQTGGAVSQGQNTLPLTRPVIASRVGAPPYQ GLQSFTAEIALQADSVRWRGMDFTQVSTKMSNQAGLLDITDLQGKLADGEMSLPGTLD ARTASPRIEFHPRLNHVEIGTILKAFNYPISLTGKMSLVGDFSGADIDAEAFRHSWKG KAHVDMSNTRLEGMNFQQLVQQAVERSGGDAQQSQENMDNATRLDRFTTDLTLNKGTL TLDDMVGQSSMLALTGSGTLDLVKQSCDTQFNLRVLGGWNGDSNLITFLKETPVPLRV YGKWQELNYTLQVDQLLRKHLQDEAKRRLNDWADRNKDTRNGKDVKKLLNKL" regulatory complement(2206849..2206854) /regulatory_class="ribosome_binding_site" /gene="asmA" /locus_tag="STM2120" /note="putative RBS for asmA; RegulonDB:STMS1H002265" gene complement(2206884..2207479) /gene="dcd" /locus_tag="STM2121" /db_xref="GeneID:1253642" CDS complement(2206884..2207465) /gene="dcd" /locus_tag="STM2121" /EC_number="3.5.4.13" /note="similar to E. coli 2'-deoxycytidine 5'-triphosphate deaminase (AAC75126.1); Blastp hit to AAC75126.1 (193 aa), 95% identity in aa 1 - 193" /codon_start=1 /transl_table=11 /product="dCTP deaminase" /protein_id="NP_461066.1" /db_xref="GI:16765451" /db_xref="GeneID:1253642" /translation="MRLCDRDIEAWLDEGRLSITPRPPVERINGATVDVRLGNKFRTF RGHTAAFIDLSGPKDEVSAALDRVMSDEIVLPDGEAFYLHPGELALAVTFESVTLPPD LVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSF EPLSGPAARPYNRRQDAKYRDQQGAVASRIDKD" regulatory complement(2207474..2207479) /regulatory_class="ribosome_binding_site" /gene="dcd" /locus_tag="STM2121" /note="putative RBS for dcd; RegulonDB:STMS1H002266" gene complement(2207556..2208212) /gene="udk" /locus_tag="STM2122" /db_xref="GeneID:1253643" CDS complement(2207556..2208197) /gene="udk" /locus_tag="STM2122" /EC_number="2.7.1.48" /note="similar to E. coli uridine/cytidine kinase (AAC75127.1); Blastp hit to AAC75127.1 (231 aa), 95% identity in aa 19 - 231" /codon_start=1 /transl_table=11 /product="uridine kinase" /protein_id="NP_461067.1" /db_xref="GI:16765452" /db_xref="GeneID:1253643" /translation="MTDQSHQCVIIGIAGASASGKSLIASTLYRELREQVGDEHIGVI PEDSYYKDQSHLSMEERVKTNYDHPNAMDHSLLFQHLQALKRGSAIELPVYSYVEHTR MQETVRVEPKKVIILEGILLLTDARLREEMNFSIFVDTPLDICLMRRIKRDVNERGRS MDSVMAQYQKTVRPMFLQFIEPSKQYADIIVPRGGKNRIAIDILKAKISQFFE" regulatory complement(2208207..2208212) /regulatory_class="ribosome_binding_site" /gene="udk" /locus_tag="STM2122" /note="putative RBS for udk; RegulonDB:STMS1H002267" gene 2208522..2211518 /gene="yegE" /locus_tag="STM2123" /db_xref="GeneID:1253644" regulatory 2208522..2208527 /regulatory_class="ribosome_binding_site" /gene="yegE" /locus_tag="STM2123" /note="putative RBS for yegE; RegulonDB:STMS1H002268" CDS 2208528..2211518 /gene="yegE" /locus_tag="STM2123" /note="Diguanylate cyclase/phosphodiesterase domain 1 and Diguanylate cyclase/phosphodiesterase domain 2 containing; similar to E. coli putative sensor-type protein (AAC75128.1); Blastp hit to AAC75128.1 (1105 aa), 76% identity in aa 540 - 437" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="NP_461068.1" /db_xref="GI:16765453" /db_xref="GeneID:1253644" /translation="MSKPSQHVFVTVPHPLLRLVSLGLVAFVFTLFSLVLSRVGTQLA PLWFPTSIMMVAFYRHAGRLWPGIAVACSLGSIGASLTLFPAASLNFSWTAINIIEAA TGAILLRKLLPSYNPLQNLNDWFRLAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWV LSEAIGALTLVPLGLLFKPHYLLRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTC VIVLLMWSAVRLPRMEAFLIFLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMI LLPANMMTMVMYAFRTERKHITESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHF LGYSQDELRTMTFQQLTWPEDLNNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALL AVSLVRHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANEALFQEKERLHITLD SIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGTPLLTVLRITSGDKGPLLEDIYR ADRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVTESRKMLRQL SYSATHDALTQLANRASFEKQLQQRLQTIQESPQHHALVFIDLDRFKAVNDSAGHAAG DALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIATRLINAINEYHFM WEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHALTSS KGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAFRA GLADSALHHALDRRVFHEFFHHAATAVASKGLSVALPLSAAGLYSATLIDELLEQLEH SPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGRDLQLFNLLPLHIV DYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGVDL IYGDTIAEAQPLDLLLNTSYFAIH" gene complement(2211486..2212521) /gene="alkA" /locus_tag="STM2124" /db_xref="GeneID:1253645" CDS complement(2211486..2212355) /gene="alkA" /locus_tag="STM2124" /EC_number="3.2.2.21" /note="inducible; similar to E. coli 3-methyl-adenine DNA glycosylase II, inducible (AAC75129.1); Blastp hit to AAC75129.1 (282 aa), 74% identity in aa 1 - 279" /codon_start=1 /transl_table=11 /product="DNA-3-methyladenine glycosylase 2" /protein_id="NP_461069.1" /db_xref="GI:16765454" /db_xref="GeneID:1253645" /translation="MFTLSWQPPYDWSWMLGFLAARAVDGVETVGEGFYARSLVVGEH RGLVSVRPHLPTHTVQVSVSAGLLPVAPACLAKVSRLFDLDCQPAQVAAVLGPLGEDR PGLRLPGSVDTFEQGVRAILGQLVSVAMAARLTAKVARRYGEALPDAPDYVCFPGPET LALADPLALKALGMPLRRAEALIHLAQATLAGKLALAAPPDIEQSVKNLQTFPGIGRW TANYFALRGWQAKDIFLPDDYLIKQRFAGMTPAQIRRYAERWKPWRSYALLHIWYTHG WQPSMDSEIAGIQ" regulatory complement(2212362..2212367) /regulatory_class="ribosome_binding_site" /gene="alkA" /locus_tag="STM2124" /note="putative RBS for alkA; RegulonDB:STMS1H002269" protein_bind complement(2212372..2212392) /gene="alkA" /locus_tag="STM2124" /note="putative binding site for Ada, RegulonDB: STMS1H000001" /bound_moiety="Ada" gene 2212475..2213841 /gene="yegD" /locus_tag="STM2125" /db_xref="GeneID:1253646" regulatory 2212475..2212480 /regulatory_class="ribosome_binding_site" /gene="yegD" /locus_tag="STM2125" /note="putative RBS for yegD; RegulonDB:STMS1H002270" CDS 2212489..2213841 /gene="yegD" /locus_tag="STM2125" /note="similar to E. coli putative heat shock protein (AAC75130.1); Blastp hit to AAC75130.1 (471 aa), 88% identity in aa 22 - 471" /codon_start=1 /transl_table=11 /product="molecular chaperone" /protein_id="NP_461070.1" /db_xref="GI:16765455" /db_xref="GeneID:1253646" /translation="MFIGFDYGTANCSVAIMRDGHPQLLTMENNSALLPSMLCAPTRE AVSEWLYRHHDVPATDEETQALLRRAIRYNREEDIEVGAQSVQFGLASLAHYIDDPQE VWFVKSPKSFLGASGLKPQQVALFEDLVCAMMVHIRHTAHSQLPEAITQAVIGRPINF QGLGGDDANRQAQGILERAAKRAGFQEVVFQYEPVAAGLDYEATLREEKRVLVVDIGG GTTDCSMLLMGPQWRQRADRENSLLGHSGCRVGGNDLDIALAFKNLMPLLGMGGETEK GIALPVLPWWNAVAINDVPAQSDFYSSANGRLLNDLVRNAREADKVALLLKVWRQRLS YRLVRCAEESKIALSGQADVTARLPFISDDLAVAISQQGLEAALDQPLTRILEQVQLA LDSAQEKPDVIYLTGGSARSPLIKKALSEQLPGIPVAGGDDFGSVTAGLARWAEVVFR " regulatory complement(2212497..2212505) /regulatory_class="minus_10_signal" /gene="alkA" /locus_tag="STM2124" /note="putative -10_signal for alkA; RegulonDB:STMLTH004525" regulatory complement(2212513..2212521) /regulatory_class="minus_35_signal" /gene="alkA" /locus_tag="STM2124" /note="putative -35_signal for alkA; RegulonDB:STMLTH004525" gene 2214267..2215523 /locus_tag="STM2126" /db_xref="GeneID:1253647" regulatory 2214267..2214272 /regulatory_class="ribosome_binding_site" /locus_tag="STM2126" /note="putative RBS for STM2126; RegulonDB:STMS1H002271" CDS 2214282..2215523 /locus_tag="STM2126" /note="similar to E. coli putative membrane protein (AAC75135.1); Blastp hit to AAC75135.1 (464 aa), 82% identity in aa 50 - 464" /codon_start=1 /transl_table=11 /product="multidrug transporter subunit MdtA" /protein_id="NP_461071.1" /db_xref="GI:16765456" /db_xref="GeneID:1253647" /translation="MKGSNTFRWAIAIGVVVAAAAFWFWHSRSESPTAAPGVAAQAPH TASAGRRGMRDGPLAPVQAATATTQAVPRYLSGLGTVTAANTVTVRSRVDGQLIALHF QEGQQVNAGDLLAQIDPSQFKVALAQAQGQLAKDNATLANARRDLARYQQLAKTNLVS RQELDAQQALVNETQGTIKADEANVASAQLQLDWSRITAPVSGRVGLKQVDVGNQISS SDTAGIVVITQTHPIDLIFTLPESDIATVVQAQKAGKALVVEAWDRTNSHKLSEGVLL SLDNQIDPTTGTIKIKARFTNQDDTLFPNQFVNARMLVDTEQNAVVVPAAAVQMGNEG HFVWVLNDENNVSKKRVKIGIQDNRNVVISAGLSAGDRVVTDGIDRLTEGAKVEVVEP QTTVADEKSPSRHEGQKGARA" gene 2215507..2218645 /gene="yegN" /locus_tag="STM2127" /db_xref="GeneID:1253648" regulatory 2215507..2215512 /regulatory_class="ribosome_binding_site" /locus_tag="STM2126" /note="putative RBS for yegN; RegulonDB:STMS1H002272" CDS 2215523..2218645 /gene="yegN" /locus_tag="STM2127" /note="similar to E. coli orf, hypothetical protein (AAC75136.1); Blastp hit to AAC75136.1 (1040 aa), 91% identity in aa 1 - 1040" /codon_start=1 /transl_table=11 /product="multidrug transporter subunit MdtB" /protein_id="NP_461072.1" /db_xref="GI:16765457" /db_xref="GeneID:1253648" /translation="MQVLPPGSTGGPSRLFILRPVATTLLMAAILLAGIIGYRFLPVA ALPEVDYPTIQVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTL QFQLTLPLDVAEQEVQAAINAATNLLPSDLPNPPIYSKVNPADPPIMTLAVTSNSMPM TQVEDMVETRVAQKISQVSGVGLVTLAGGQRPAVRVKLNAQAVAALGLTSETVRTAIT GANVNSAKGSLDGPERAVTLSANDQMQSADEYRRLIIAYQNGAPVRLGDVATVEQGAE NSWLGAWANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTT NIRASVRDTQFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFS INNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFS LIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQN RFSRACERMFDRVIASYGRGLAKVLNHPWLTLSVAFATLLLSVMLWIVIPKGFFPVQD NGIIQGTLQAPQSSSYASMAQRQRQVAERILQDPAVQSLTTFVGVDGANPTLNSARLQ INLKPLDARDDRVQQVISRLQTAVATIPGVELYLQPTQDLTIDTQVSRTQYQFTLQAT TLDALSHWVPKLQNALQSLPQLSEVSSDWQDRGLAAWVNVDRDSASRLGISMADVDNA LYNAFGQRLISTIYTQANQYRVVLEHNTASMPGLAALETIRLTSRDGGTVPLSAIARI EQRFAPLSINHLDQFPVTTFSFNVPESYSLGDAVQAILDTEKTLALPADITTQFQGST LAFQAALGSTVWLIVAAVVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALIIAGS ELDIIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIFQACLLRFRPILMTT LAALLGALPLMLSTGVGTELRRPLGIAMVGGLLVSQVLTLFTTPVIYLLFDRLSLYVK SRFPRHKEEA" gene 2218634..2221726 /gene="yegO" /locus_tag="STM2128" /db_xref="GeneID:1253649" regulatory 2218634..2218639 /regulatory_class="ribosome_binding_site" /gene="yegO" /locus_tag="STM2128" /note="putative RBS for yegO; RegulonDB:STMS1H002273" CDS 2218646..2221726 /gene="yegO" /locus_tag="STM2128" /note="efflux transporter; outer membrane; similar to E. coli orf, hypothetical protein (AAC75137.1); Blastp hit to AAC75137.1 (1025 aa), 91% identity in aa 1 - 1025" /codon_start=1 /transl_table=11 /product="multidrug transporter subunit MdtC" /protein_id="NP_461073.1" /db_xref="GI:16765458" /db_xref="GeneID:1253649" /translation="MRFFALFIYRPVATILIAAAITLCGILGFRLLPVAPLPQVDFPV IMVSASLPGASPETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDIN GAARDVQAAINAAQSLLPGGMPSRPTYRKANPSDAPIMILTLTSESWSQGKLYDFAST QLAQTIAQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQG AIEDSVHRWQIQTNDELKTAAEYQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGMTN AKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMAL TIATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLL LMGGLPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLL VALQQGYGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQA DQSISFQAMRGKLQDFMKIIRDDPAVNNVTGFTGGSRVNSGMMFITLKPRGERKETAQ QIIDRLRVKLAKEPGARLFLMAVQDIRVGGRQANASYQYTLLSDSLAALREWEPKIRK ALSALPQLADVNSDQQDNGAEMNLIYDRDTMSRLGIDVQAANSLLNNAFGQRQISTIY QPMNQYKVVMEVDPRYSQDISALEKMFVINRDGKAIPLSYFAQWRPANAPLSVNHQGL SAASTIAFNLPTGTSLSQATEAINRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILI VAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLI GIVKKNAIMMVDFALEAQRSGGLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSG GDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSRKNSKPVVEI" gene 2221709..2223135 /gene="yegB" /locus_tag="STM2129" /db_xref="GeneID:1253650" regulatory 2221709..2221714 /regulatory_class="ribosome_binding_site" /gene="yegB" /locus_tag="STM2129" /note="putative RBS for yegB; RegulonDB:STMS1H002274" CDS 2221723..2223135 /gene="yegB" /locus_tag="STM2129" /note="similar to E. coli putative transport protein (AAC75138.1); Blastp hit to AAC75138.1 (471 aa), 85% identity in aa 1 - 469" /codon_start=1 /transl_table=11 /product="multidrug transporter subunit MdtD" /protein_id="NP_461074.1" /db_xref="GI:16765459" /db_xref="GeneID:1253650" /translation="MTELPDNTRWQLWIVAFGFFMQSLDTTIVNTALPSMAKSLGESP LHMHMVVVSYVLTVAVMLPASGWLADKIGVRNIFFAAIVLFTLGSLFCALSGTLNQLV LARVLQGVGGAMMVPVGRLTVMKIVPRAQYMAAMTFVTLPGQIGPLLGPALGGVLVEY ASWHWIFLINIPVGIVGAMATFMLMPNYIIETRRFDLPGFLLLAIGMAVLTLALDGSK SMGISPWTLAGLAAGGAAAILLYLFHAKKNSGALFSLRLFRTPTFSLGLLGSFAGRIG SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQIVNRFGYRRVLVATT LGLALVSLLFMSVALLGWYYLLPLVLLLQGMVNSARFSSMNTLTLKDLPDTLASSGNS LLSMIMQLSMSIGVTIAGMLLGMFGQQHIGIDSSATHHVFMYTWLCMAVIIALPAIIF ARVPNDTQQNMVISRRKRSL" gene 2223123..2224538 /gene="baeS" /locus_tag="STM2130" /db_xref="GeneID:1253651" regulatory 2223123..2223128 /regulatory_class="ribosome_binding_site" /gene="baeS" /locus_tag="STM2130" /note="putative RBS for baeS; RegulonDB:STMS1H002275" CDS 2223135..2224538 /gene="baeS" /locus_tag="STM2130" /EC_number="2.7.3.-" /note="similar to E. coli sensor protein (for BaeR) (AAC75139.1); Blastp hit to AAC75139.1 (467 aa), 88% identity in aa 1 - 467" /codon_start=1 /transl_table=11 /product="two-component system sensor histidine kinase BaeA" /protein_id="NP_461075.1" /db_xref="GI:16765460" /db_xref="GeneID:1253651" /translation="MKVWRPGITGKLFLAIFATCIVLLISMHWAVRVSFERGFIDYIK HGNEQRLQMLGDALGDQYQQHGNWRFLRNNDRFVFQILRSFEHDNDRDKPGPGMPPHG WRTQFWVVDQNGRVLVGPRGPVPHDGTRRPILVNDVEVGAIIASPVERLTRNTDINFD MQQRRASWMIVALSTLLAALATFLLARGLLAPVKRLVEGTHRLAAGDFTTRVTPTSAD ELGKLAQDFNQLASTLEKNQQMRRDFMADISHELRTPLAVLRGELEAIQDGVRQFTPE SVTSLQAEVGTLTKLVDDLHQLSLSDEGALAYQKTTVDLVPLLEVAGGAFRERFTSRG LTLHYALPDSMTVFGDPDRLMQLFNNLLENSLRYTDSGGGLHISAEQRDKSLFLTFAD SAPGVSDEQLQKLFDRFYRTEVSRNRASGGSGLGLAICVNIVHAHNGHLHAAHSPFGG VSITVELPLDRDLQREV" gene 2224528..2225257 /gene="baeR" /locus_tag="STM2131" /db_xref="GeneID:1253652" regulatory 2224528..2224533 /regulatory_class="ribosome_binding_site" /gene="baeR" /locus_tag="STM2131" /note="putative RBS for baeR; RegulonDB:STMS1H002276" CDS 2224535..2225257 /gene="baeR" /locus_tag="STM2131" /note="OmpR family; similar to E. coli transcriptional response regulatory protein (sensor BaeS) (AAC75140.1); Blastp hit to AAC75140.1 (240 aa), 96% identity in aa 1 - 240" /codon_start=1 /transl_table=11 /product="two-component system response regulator BaeR" /protein_id="NP_461076.1" /db_xref="GI:16765461" /db_xref="GeneID:1253652" /translation="MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLINHGD KVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEI GADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLMIDESRFQASWCGKALD LTPAEFRLLKTLSLEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAE QSFIRAVYGVGYRWEADACRLV" gene 2225526..2225844 /locus_tag="STM2132" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1253653" gene 2225838..2226728 /locus_tag="STM2133" /db_xref="GeneID:1253654" regulatory 2225838..2225843 /regulatory_class="ribosome_binding_site" /locus_tag="STM2132" /note="putative RBS for STM2133; RegulonDB:STMS1H002278" /pseudo CDS 2225844..2226728 /locus_tag="STM2133" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461077.1" /db_xref="GI:16765462" /db_xref="GeneID:1253654" /translation="MEFLSRQEGTRLETKLQRINCFTVLAMREAEHQKMQRLREQGWY PSNSEALKPVMTVNNGVLVELDATNPGLRSEMAYESWHMQHCVGDFDNKGALSGGYGD YYARQIEQQKLRLFSLRDGNNIPHVTISLVVGNNGLSIDQIKGKQNRHPIKKYANDVL SLLRHLQPLPERHADCEGMGIVYELTPEYSGWKFITHIHDLNFLLNVLHDNFHLMEHF PTPPVALQWLLLHSAPEALRYLQVVDPNVATAAEMLFPQHEWHPTLAGKNTSSEPFEI ESLTLQTTRYLPVIKEVQ" gene 2226721..2227444 /locus_tag="STM2134" /db_xref="GeneID:1253655" regulatory 2226721..2226726 /regulatory_class="ribosome_binding_site" /locus_tag="STM2134" /note="putative RBS for STM2134; RegulonDB:STMS1H002279" CDS 2226728..2227444 /locus_tag="STM2134" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461078.1" /db_xref="GI:16765463" /db_xref="GeneID:1253655" /translation="MFWIVLIIAALFFSWRNYKKNKPLIAARIAEEKEKDRLKDLRRD TRRRQWALALADILARRNGLPIKGVELVFKLDDDKRRYLAQQVKKELGLSENLDGAAL RHKVEDILRRWPAGIGSSPRTFYHHLAAQGQVRDALAFDCMRTAFLTRCIAGLGWCDV HQAWLVLLLNAQRAQDCFDSWEDYATAYVRARRVWLTLRDTPTALAGRDLQEATHYLQ DPVSRWRQLPWNEFKIFEPI" gene 2227449..2229566 /locus_tag="STM2135" /db_xref="GeneID:1253656" regulatory 2227449..2227454 /regulatory_class="ribosome_binding_site" /locus_tag="STM2135" /note="putative RBS for STM2135; RegulonDB:STMS1H002280" CDS 2227455..2229566 /locus_tag="STM2135" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461079.1" /db_xref="GI:16765464" /db_xref="GeneID:1253656" /translation="MEQDDRLLNAMFEMCNHKNPLNDGQREWHIADIPGLLREERYDE LDERYNQALTESFTSREAEKRYFFAWNQMDNPFYDMDTLVEAGPQGLALIKNWQRARP RSTHAWLAEAQYWNHRAWLYRSYGWARETTRAMWICAAACNERMVIAALNAIDCEPRQ WMAAALTSTNSKVFGQPEWLVEFLVGADVAGQPLMEDLAEYHRHSPQEVDALMAHSGL SFTDAVCPNLPRPSVLPECNDDAGQKYWLAVCLAIFPTAFYVLDEYIPFRMPRWRGSH EEIREFLESSVCDHLSAAEREHLELLIWWDDHRDLRIKEVDSPAEQERIIAKAEEISL RAHIQESRHNALEWLRVCYSDLDDNDALWRTLQRSIVEKVKLNNYFSDDTIKFALRDF PDTWWMYNFLCQNAQQTEFAVPKIRRGYFQYAGLLGFEKDEAQGLAWLDSVADIQYNH NWRAAIKNFDWFGLPEHFVPLAELGAQRNIPAALNLLGLEHNNKENNGLLPYDPAIAL GYFQRAAEILHRQLALRESTPYKLIDNGGYTDYENDLQNIHFSIGICNQRLSKQEPDT EKRSAYEKELLDNLWLAHQFGHKEAWGLFLLNIFEVKDITLAHKHLELVQQEANKGTL HAMVTLSRLHGNKHDRTLFNMKLSARWAHFAFTLYPDNEIVMDCLDHLHFDSFWKRFR FAWYTVRIPNSELPGQVNSMV" gene 2229673..2231043 /gene="yegQ" /locus_tag="STM2136" /db_xref="GeneID:1253657" regulatory 2229673..2229678 /regulatory_class="ribosome_binding_site" /gene="yegQ" /locus_tag="STM2136" /note="putative RBS for yegQ; RegulonDB:STMS1H002281" CDS 2229682..2231043 /gene="yegQ" /locus_tag="STM2136" /EC_number="3.4.-.-" /note="similar to E. coli orf, hypothetical protein (AAC75142.1); Blastp hit to AAC75142.1 (453 aa), 96% identity in aa 1 - 453" /codon_start=1 /transl_table=11 /product="U32 family peptidase" /protein_id="NP_461080.1" /db_xref="GI:16765465" /db_xref="GeneID:1253657" /translation="MFKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFN HENLQLGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLKPVVEMGPDALIMSDPGLIM LVREHFPAMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEIEEIRQQVPDME IEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYNVQEGKEDVVGNIVHKH EPIPVQNVEPTLGIGAPTDKVFMIEEAQRPGEYMTAFEDEHGTYIMNSKDLRAIAHVE RLTKMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDPTLLETLEGLAHRGY TEGFLRRHTHDDYQNYEYGYSVSERQQFVGEFTGERKGQLAAVAVKNKFSVGDSLELM TPQGNINFTLEQMENAKGDAMPVAPGDGYTVWMPVPQDVTLDYALLMRNFSGESTRNP HAK" gene 2231494..2232540 /locus_tag="STM2137" /db_xref="GeneID:1253658" CDS 2231494..2232540 /locus_tag="STM2137" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461081.1" /db_xref="GI:16765466" /db_xref="GeneID:1253658" /translation="MARFNAAFTRIKIMFSRIRGLISCQSNTQTIAPTLSPPSSGHVS FAGIDYPLLPLNHQTPLVFQWFERNPDRFGQNEIPIINTQKNPYLNNIINAAIIEKER IIGIFVDGDFSKGQRKALGKLEQNYRNIKVIYNSDLNYSMYDKKLTTIYLENITKLEA QSASERDEVLLNGVKKSLEDVLKNNPEETLISSHNKDKGHLWFDFYRNLFLLKGSDAF LEAGKPGCHHLQPGGGCIYLDADMLLTDKLGTLYLPDGIAIHVSRKDNHVSLENGIIA VNRSEHPALIKGLEIMHSKPYGDPYNDWLSKGLRHYFDGSHIQDYDAFCDFIEFKHEN IIMNTSSLTASSWR" gene complement(2232576..2232997) /locus_tag="STM2138" /db_xref="GeneID:1253659" CDS complement(2232576..2232992) /locus_tag="STM2138" /codon_start=1 /transl_table=11 /product="Tir chaperone family protein" /protein_id="NP_461082.1" /db_xref="GI:16765467" /db_xref="GeneID:1253659" /translation="MYSRADRLLRQFSLKLNTDSIVFDENRLCSFIIDNRYRILLTST NSEYIMIYGFCGKPPDNNNLAFEFLNANLWFAENNGPHLCYDNNSQSLLLALNFSLNE SSVEKLECEIEVVIRSMENLYHILQDKGITLDTDYT" regulatory complement(2232992..2232997) /regulatory_class="ribosome_binding_site" /locus_tag="STM2138" /note="putative RBS for STM2138; RegulonDB:STMS1H002282" gene complement(2233114..2233455) /locus_tag="STM2139" /db_xref="GeneID:1253660" CDS complement(2233114..2233449) /locus_tag="STM2139" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461083.1" /db_xref="GI:16765468" /db_xref="GeneID:1253660" /translation="MNVTSGVNAQTPLLPPSERGNDEKPVAEIVDFNAYGNKPRCLMC LGTTALFTSVFSGVCSGAVASVSSGAAYTTALTVLGASFGMGGIGMMGICAGLYLSAN GIRTRPAWP" regulatory complement(2233450..2233455) /regulatory_class="ribosome_binding_site" /locus_tag="STM2139" /note="putative RBS for STM2139; RegulonDB:STMS1H002283" gene 2233999..2234910 /gene="yegS" /locus_tag="STM2140" /db_xref="GeneID:1253661" regulatory 2233999..2234004 /regulatory_class="ribosome_binding_site" /gene="yegS" /locus_tag="STM2140" /note="putative RBS for yegS; RegulonDB:STMS1H002284" CDS 2234011..2234910 /gene="yegS" /locus_tag="STM2140" /note="similar to E. coli orf, hypothetical protein (AAC75147.1); Blastp hit to AAC75147.1 (299 aa), 85% identity in aa 1 - 299" /codon_start=1 /transl_table=11 /product="lipid kinase YegS" /protein_id="NP_461084.1" /db_xref="GI:16765469" /db_xref="GeneID:1253661" /translation="MANFPASLLILNGKSADNQPLREAITLLRDEGIQIHVRVTWEKG DAQRYVDEARRLGVETVIAGGGDGTINEVSTALIQIRDGVAPALGLLPLGTANDFATS AGIPEALDKALKLAIAGNAMEIDMAMVNDKTCFINMATGGFGTRITTETPEKLKAALG GVSYLIHGLMRMDTLTPDRCEIRGENFHWQGDALVIGIGNGRQAGGGQQLCPTALIND GLLQLRIFTGEELLPALFSTLTQSDDNPNIIDGASAWFDIHAPHEITFNLDGEPLSGQ EFHIEVLPGALRCRLPPDCPLLR" gene complement(2234963..2236029) /gene="fbaB" /locus_tag="STM2141" /db_xref="GeneID:1253662" CDS complement(2234963..2236015) /gene="fbaB" /locus_tag="STM2141" /EC_number="4.1.2.13" /note="similar to E. coli orf, hypothetical protein (AAC75158.1); Blastp hit to AAC75158.1 (374 aa), 96% identity in aa 25 - 374" /codon_start=1 /transl_table=11 /product="class I fructose-bisphosphate aldolase" /protein_id="NP_461085.1" /db_xref="GI:16765470" /db_xref="GeneID:1253662" /translation="MTDIAQLLGKDADSLLQHRCMTIPSDQLYLPGKDYVDRVMIDNN RPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPRYFDPKNIVELAI EAGCNCVASTYGVLASVSRRYAHRIPFLVKLNHNETLSYPTEYDQTLYASVEQAFNMG AVAVGATIYFGSEQSRRQIEEISAAFERAHELGMVTVLWAYLRNSSFKKDGVDYHVSA DLTGQANHLAATIGADIVKQKMAENNGGYKAVNFGYTDDRVYSKLTSDNPIDLVRYQL ANCYMGRAGLINSGGADGGDTDLGDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKL INAVQDVYLDSKVTIA" regulatory complement(2236024..2236029) /regulatory_class="ribosome_binding_site" /gene="fbaB" /locus_tag="STM2141" /note="putative RBS for fbaB; RegulonDB:STMS1H002285" gene 2236257..2237540 /gene="yegT" /locus_tag="STM2142" /db_xref="GeneID:1253663" regulatory 2236257..2236262 /regulatory_class="ribosome_binding_site" /gene="yegT" /locus_tag="STM2142" /note="putative RBS for yegT; RegulonDB:STMS1H002286" CDS 2236269..2237540 /gene="yegT" /locus_tag="STM2142" /note="similar to E. coli putative nucleoside permease protein (AAC75159.1); Blastp hit to AAC75159.1 (425 aa), 94% identity in aa 1 - 425" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_461086.1" /db_xref="GI:16765471" /db_xref="GeneID:1253663" /translation="MKTTFKLSFMMFVEWFIWGAWFVPLWLWLNKSGFSAGEIGWSYA CTAIAAILSPILVGSVTDRFFSAQKVLAVLMFAGAVLMYFAAQQTTFAGFFPLLLAYS LTYMPTIALTNSIAFANVPDVERDFPRIRVMGTIGWIASGLACGFLPQMLGYNDISPT NIPLLITAASSALLGVFAFCLPDTPPKSTGKMDIKVMLGLDALVLLRDKNFLVFFFCS FLFAMPLAFYYIFANGYLTEVGMKNATGWMTLGQFSEIFFMLALPFFTKRFGIKKVLL LGLITAAIRYGFFVYGGAETYFTYALLFLGILLHGVSYDFYYVTAYIYVDKKAPVHMR TAAQGLITLCCQGFGSLLGYRLGGVMMEKMFAYPQPVNGLTFNWAGMWTFGAVMIAVI ALLFMIFFRESDKEITAIDDRDIALTQGEVK" gene 2237524..2238541 /gene="yegU" /locus_tag="STM2143" /db_xref="GeneID:1253664" regulatory 2237524..2237529 /regulatory_class="ribosome_binding_site" /gene="yegU" /locus_tag="STM2143" /note="putative RBS for yegU; RegulonDB:STMS1H002287" CDS 2237537..2238541 /gene="yegU" /locus_tag="STM2143" /note="similar to E. coli orf, hypothetical protein (AAC75160.1); Blastp hit to AAC75160.1 (334 aa), 83% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461087.1" /db_xref="GI:16765472" /db_xref="GeneID:1253664" /translation="MKAERILGALYGQALGDAMGMPSELWPRTRVKAHFGWIDRFLPG PKENNAACYFNRAEFTDDTAMALCLADALLECEGNIDPEIIGRNILAWAERFDAFNKN VLGPTSKIALNAIRDGKPIAALENNGVTNGAAMRVSPLGCLLPPTNLTAFIAEVALAS SPTHKSDLAVAGAVVVAWAVSRAVNGDTWQSIADSLPAVAHQAQTARITTFSASLSAR LELALNIVRHADGVESASEQLYQIIGAGTSTIESVPCAIAMVELANTDPNRCAVLCAN LGGDTDTIGAMATAICGALHGVSAINPQLKQTLDEVNQLDFARYAVALASYRQRREAL " gene 2238530..2239503 /gene="yegV" /locus_tag="STM2144" /db_xref="GeneID:1253665" regulatory 2238530..2238535 /regulatory_class="ribosome_binding_site" /gene="yegV" /locus_tag="STM2144" /note="putative RBS for yegV; RegulonDB:STMS1H002288" CDS 2238538..2239503 /gene="yegV" /locus_tag="STM2144" /note="similar to E. coli putative kinase (AAC75161.1); Blastp hit to AAC75161.1 (321 aa), 76% identity in aa 1 - 321" /codon_start=1 /transl_table=11 /product="putative sugar kinase" /protein_id="NP_461088.1" /db_xref="GI:16765473" /db_xref="GeneID:1253665" /translation="MNGARLLTLLPTLHTRRPLTVIGAAVIDIIADAWTLPRRGGDIE LQQQSVNVGGCALNIAVALKRLGIDASNALPLGQGVWAERIRRRLAKEGLSSVIDAVE GDNGWCLALVEPDGERTFMSFSGVENQWNADWLSQLRTPRGSLVYLSGYQLASSCGEP LIQWLETVDDVTPFIDFGPRIGDITDDAMARIMACRPIVSLNRQEAIIAAERAGLATD TRTFGEAWVNRFSAPLVVRHDKDGAWYFSAQSSGVVPAFPATVVDTIGAGDSHAGGVL AGLASGWSLADAVLLGNAVASWVVGHRGGDCAPTREALLLAHKNV" gene complement(2239477..2240235) /gene="yegW" /locus_tag="STM2145" /db_xref="GeneID:1253666" CDS complement(2239477..2240223) /gene="yegW" /locus_tag="STM2145" /note="similar to E. coli putative transcriptional regulator (AAC75162.1); Blastp hit to AAC75162.1 (248 aa), 92% identity in aa 1 - 248" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="NP_461089.1" /db_xref="GI:16765474" /db_xref="GeneID:1253666" /translation="MEQAHTRLIAQLNERISAADNTPLYMKFAQTVKDAVRSGILEHG NILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRARGYGTQINNIFEYSLKEARGFS QQVVLRGKKPDTLWVNKRVVSCPDEVAQHLAIPAGSDVFLLKRIRYVDEDAVSIEESW VPAHLIHDVDAIGISLYDYFRRQHIYPQRTRSRVSARMPDDEFQSHIQMDGKVPVLVI KQVALDQQQRPIEYSISYCRSDLYVFVCEE" regulatory complement(2240230..2240235) /regulatory_class="ribosome_binding_site" /gene="yegW" /locus_tag="STM2145" /note="putative RBS for yegW; RegulonDB:STMS1H002289" gene complement(2240259..2241072) /gene="thiD" /locus_tag="STM2146" /db_xref="GeneID:1253667" CDS complement(2240259..2241059) /gene="thiD" /locus_tag="STM2146" /EC_number="2.7.4.7" /note="bifunctional enzyme; phosphomethylpyrimidine kinase. (SW:THID_SALTY)" /codon_start=1 /transl_table=11 /product="bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase" /protein_id="NP_461090.1" /db_xref="GI:16765475" /db_xref="GeneID:1253667" /translation="MQRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQ NTCGVQSVYRIEPDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRHHVRNV VLDTVMLAKSGDPLLSPSAIETLRVRLLPQVSLITPNLPEAAALLDAPHARTEQEMLA QGRALLAMGCEAVLMKGGHLEDAQSPDWLFTREGEQRFSAPRVNTKNTHGTGCTLSAA LAALRPRHRSWGETVNEAKAWLSAALAQADTLEVGKGIGPVHHFHAWW" gene complement(2241046..2241856) /gene="thiM" /locus_tag="STM2147" /db_xref="GeneID:1253668" CDS complement(2241046..2241843) /gene="thiM" /locus_tag="STM2147" /EC_number="2.7.1.50" /note="(SW:THIM_SALTY)" /codon_start=1 /transl_table=11 /product="hydroxyethylthiazole kinase" /protein_id="NP_461091.1" /db_xref="GI:16765476" /db_xref="GeneID:1253668" /translation="MQPDLHCRTLAAHTLKHFRALSPLTHCMTNDVVQTFTANTLLAL GASPAMVIDPVEARPFAAIANALLINVGTLTASRADAMRAAVESAYDAKTPWTLDPVA VGALEFRRRFCLDLLSLRPAAIRGNASEILALSGMALGGRGVDTTEAALAALPAAQAL ARQIDCIVVVTGEIDYVTNGQRTLSIPGGDPLMTRIVGTGCALSAVVAASCALPGAAL DNVASACCWMKLAGQAAAERSEGPGSFIPAFLDALYHLDVEAANATN" regulatory complement(2241067..2241072) /regulatory_class="ribosome_binding_site" /gene="thiM" /locus_tag="STM2147" /note="putative RBS for thiD; RegulonDB:STMS1H002290" regulatory complement(2241851..2241856) /regulatory_class="ribosome_binding_site" /gene="thiM" /locus_tag="STM2147" /note="putative RBS for thiM; RegulonDB:STMS1H002291" gene 2242238..2242567 /locus_tag="STM2148" /db_xref="GeneID:1253669" regulatory 2242238..2242243 /regulatory_class="ribosome_binding_site" /locus_tag="STM2148" /note="putative RBS for STM2148; RegulonDB:STMS1H002292" CDS 2242253..2242567 /locus_tag="STM2148" /note="similar to E. coli orf, hypothetical protein (AAC75168.1); Blastp hit to AAC75168.1 (172 aa), 80% identity in aa 63 - 172" /codon_start=1 /transl_table=11 /product="heavy metal resistance protein" /protein_id="NP_461092.1" /db_xref="GI:16765477" /db_xref="GeneID:1253669" /translation="MKSKLLPCALLLATSFAWAAPATTGIDQYELKSFIADFTHFKPG DTVPQMYRTDEYNIKQWKLRNLPAPDAGTHWTYMGGAYVLINDTDGKIIKAYDGEIFY HR" gene complement(2242830..2243848) /gene="stcD" /locus_tag="STM2149" /db_xref="GeneID:1253670" CDS complement(2242830..2243837) /gene="stcD" /locus_tag="STM2149" /note="similar to E. coli putative type-1 fimbrial protein (AAC75169.1); Blastp hit to AAC75169.1 (344 aa), 50% identity in aa 3 - 344" /codon_start=1 /transl_table=11 /product="adhesin" /protein_id="NP_461093.1" /db_xref="GI:16765478" /db_xref="GeneID:1253670" /translation="MKLFLFIVMLLILPETYAACTGEITYQDNLIIREDFTINPNQSA TYSHNFNDTTCSGTYKITRMDPSDIIVGLYNDTVKLKLKIAWADNNTLTMPFTTGYTV TVEPASSGANVNISAGSGNSVLINGVVSITSASSATQFTAGLRFLGCLLAGRGWNACA ADYNSYLRGAGLYSFDLFVSYDRKQTTCKPEDLTITLPNIALSELYNTGKVSNKNAAD NIRLQCDNLFGNAKQTSRKMTVYLSSSDLIPDSYSVLRGAVNNGVGFILESGGKTVNI SNTAEQGNASTLWKVDQVGTPLNSDMITIPIIASYYVYDRDNIKPGDLKATALIYVKY D" regulatory complement(2243843..2243848) /regulatory_class="ribosome_binding_site" /gene="stcD" /locus_tag="STM2149" /note="putative RBS for stcD; RegulonDB:STMS1H002293" gene complement(2243853..2246354) /gene="stcC" /locus_tag="STM2150" /db_xref="GeneID:1253671" CDS complement(2243853..2246342) /gene="stcC" /locus_tag="STM2150" /note="similar to E. coli putative outer membrane protein (AAC75170.1); Blastp hit to AAC75170.1 (826 aa), 74% identity in aa 1 - 826" /codon_start=1 /transl_table=11 /product="fimbrial assembly protein" /protein_id="NP_461094.1" /db_xref="GI:16765479" /db_xref="GeneID:1253671" /translation="MLRMTPIASLVLLTLFTWQTQAIATETFDTHFMVGGMRDQKITN FHLDENKPIPGQYELDIYVNNQWRGKYDIIVADDPGSTCISTELLKNIGVISDGLQPQ GATDCIALKDVVRSGGYTFNIGVFRLDLSVPQAYVNEVEAGYVLPENWDRGINAFYTS YYASQYYSDYKNSGSSESTYVRFNSGFNLLGWQAHADTTFNKTDGSSGEWKSNTLYLE RGIAELLGTLRAGDQYTSSEIFDSVRFTGVRLFRDMQMLPNSKQNFTPLVQGIAQTNA LVTIEQNGFVVYQKEVPPGPFSIADLQLAGGGADLDVTVREADGSINTWLVPYASVPN MLQPGVSKYDFSAGRSHIEGADNQADFTQISYQYGLNNLLTLYGGTMLSNHYNAFTLG TGWNTRIGAISLDATRAHSKQDNGDVFDGQSYQIAYNKYLTQTLTRFGLAAYRYSSQD YRTFNDHVWANNKNNYRRDKNDVYDIADYYQNDFGRKNTFSANVSQSLPEGWGAVSLS ALWRDYWGRSGTSKDYQISYSNTFQKINYTLSASQTYDEDHNEDKRFNLFISIPFDWG DGITTPRRHLNVSNSTTFDDDGFTSNNIGLTGTAGSRDQFNYGVSVSHQRHDSETTAG TNLTWNTPVATLNGSYSQSSNYTQTGGSISGGVVAWSGGLNLSSRLSDTFAIMQAPGL EGAYVNGQKYRTTNKKGTVVYDNLTPYRENHLMLDVSQSSSETELRGNRKVAAPYRGA VVLVNFDTDQRKPWFIKAQRPDGSPLIFGYDVVDHHGHNVGIVGQGSQLFIRTNDIPP EVSVPVDKEQGLSCSITFGKTVDESKVYICR" regulatory complement(2246349..2246354) /regulatory_class="ribosome_binding_site" /gene="stcC" /locus_tag="STM2150" /note="putative RBS for stcC; RegulonDB:STMS1H002294" gene complement(2246356..2247053) /gene="stcB" /locus_tag="STM2151" /db_xref="GeneID:1253672" CDS complement(2246356..2247039) /gene="stcB" /locus_tag="STM2151" /note="similar to E. coli putative chaperone (AAC75171.1); Blastp hit to AAC75171.1 (239 aa), 64% identity in aa 16 - 239" /codon_start=1 /transl_table=11 /product="putative periplasmic chaperone protein" /protein_id="NP_461095.1" /db_xref="GI:16765480" /db_xref="GeneID:1253672" /translation="MKILSAVLLSAIILPAHAGIVIYGTRVIYPAEKKEVVVQLVNQG EQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMPNSLPDNKES LFYLNVLDIPPNSQENAGKNVLKFAMQNRIKLIWRPSRIAAVTKDSFQRIGLFRSNKA VIMKNDTANWITVTDVKAGNTKINDQTIMLPPLSTQNINMKYASTSQYEVTIIDDNGN YISSKMNVK" regulatory complement(2247048..2247053) /regulatory_class="ribosome_binding_site" /gene="stcB" /locus_tag="STM2151" /note="putative RBS for stcB; RegulonDB:STMS1H002295" gene complement(2247095..2247637) /gene="stcA" /locus_tag="STM2152" /db_xref="GeneID:1253673" CDS complement(2247095..2247625) /gene="stcA" /locus_tag="STM2152" /note="similar to E. coli putative fimbrial-like protein (AAC75172.1); Blastp hit to AAC75172.1 (180 aa), 33% identity in aa 1 - 180" /codon_start=1 /transl_table=11 /product="fimbrial chaperone protein" /protein_id="NP_461096.1" /db_xref="GI:16765481" /db_xref="GeneID:1253673" /translation="MKRSLIAASVLSAVFMSAGAFAVDEYDSGVLNINGKVVGTTCQF LGTNTAEIRLNEIGADKIINLTPGQIYDAVTNQTQMPLKIKCQQGVAPRITFSSTQFD SHDITFNNGSAKGVGFAVYYGSTDNQIDPETGVTLDPNSSGEYDLTFLARYARLDGDV ASGDVSSTLTLTVVTD" regulatory complement(2247632..2247637) /regulatory_class="ribosome_binding_site" /gene="stcA" /locus_tag="STM2152" /note="putative RBS for stcA; RegulonDB:STMS1H002296" gene complement(2247904..2248203) /gene="yehE" /locus_tag="STM2153" /db_xref="GeneID:1253674" CDS complement(2247904..2248185) /gene="yehE" /locus_tag="STM2153" /note="similar to E. coli orf, hypothetical protein (AAC75173.1); Blastp hit to AAC75173.1 (93 aa), 48% identity in aa 1 - 93" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461097.1" /db_xref="GI:16765482" /db_xref="GeneID:1253674" /translation="MKKYLLMGIIVSAYGISVPVFASDTATLTISGKVTAPTCSTEVV NAQLQQRCGNTIHVSTLQTPAATPMRGVTTQLYTVPGDSTRQIVVNHYD" regulatory complement(2248198..2248203) /regulatory_class="ribosome_binding_site" /gene="yehE" /locus_tag="STM2153" /note="putative RBS for yehE; RegulonDB:STMS1H002297" gene complement(2248463..2249583) /gene="mrp" /locus_tag="STM2154" /db_xref="GeneID:1253675" CDS complement(2248463..2249572) /gene="mrp" /locus_tag="STM2154" /note="similar to E. coli putative ATPase (AAC75174.1); Blastp hit to AAC75174.1 (379 aa), 96% identity in aa 11 - 379" /codon_start=1 /transl_table=11 /product="Fe-S-binding ATPase" /protein_id="NP_461098.1" /db_xref="GI:16765483" /db_xref="GeneID:1253675" /translation="MNEQSQAKSPDTLRAMVAGTLANFQHPTLKHNLTTLKALHHVAW MDDTLHVELVMPFVWNSAFEVLKEQCSADLLRITGAKAIDWKLSYNIATLKRVKNQPG INGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGVLDADIYGPSIPTMLGAEDQ RPTSPDGTHMAPIMSHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDY LVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVE NMSMHICSNCGHHEPIFGTGGAQKLAEKYHTQLLGQMPLHISLREDLDRGTPTVVSRP ESEFTAIYRELADRVAAQLYWQGEVIPGEIAFRAV" regulatory complement(2249578..2249583) /regulatory_class="ribosome_binding_site" /gene="mrp" /locus_tag="STM2154" /note="putative RBS for mrp; RegulonDB:STMS1H002298" gene 2249717..2251770 /gene="metG" /locus_tag="STM2155" /db_xref="GeneID:1253676" regulatory 2249717..2249722 /regulatory_class="ribosome_binding_site" /gene="metG" /locus_tag="STM2155" /note="putative RBS for metG; RegulonDB:STMS1H002299" CDS 2249737..2251770 /gene="metG" /locus_tag="STM2155" /EC_number="6.1.1.10" /note="similar to E. coli methionine tRNA synthetase (AAC75175.1); Blastp hit to AAC75175.1 (677 aa), 95% identity in aa 1 - 677" /codon_start=1 /transl_table=11 /product="methionine--tRNA ligase" /protein_id="NP_461099.1" /db_xref="GI:16765484" /db_xref="GeneID:1253676" /translation="MTQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGH EVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSDE NRELSELIYTRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSADQYGDNCE VCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANK MQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDTT SFDEYWKKDSDAELYHFIGKDIVYFHSLFWPAMLEGSHFRKPTNLFVHGYVTVNGAKM SKSRGTFIKASTWLKHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVN LASRNAGFINKRFDGVLAAELADPQLYKTFTDAAAVIGEAWESREFGKAIREIMALAD IANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPTLSERVEAFLN SELNWDAIEQPLLGHKVNTFKALYNRIDMKQVEALVESSKEEVKAAAAPVTGPLADFP IQETITFDDFAKIDLRVALIENAEFVDGSDKLLRLTLDLGGEKRNVFSGIRSAYPDPQ ALIGRQTVMVANLAPRKMRFGVSEGMVMAAGPGGKDIFLLSPDDGAKPGQQVK" gene 2251999..2252469 /gene="yehR" /locus_tag="STM2156" /db_xref="GeneID:1253677" regulatory 2251999..2252004 /regulatory_class="ribosome_binding_site" /gene="yehR" /locus_tag="STM2156" /note="putative RBS for yehR; RegulonDB:STMS1H002300" CDS 2252011..2252469 /gene="yehR" /locus_tag="STM2156" /note="similar to E. coli orf, hypothetical protein (AAC75184.1); Blastp hit to AAC75184.1 (157 aa), 72% identity in aa 5 - 157" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461100.1" /db_xref="GI:16765485" /db_xref="GeneID:1253677" /translation="MKISGKLLSAALASVLVFSLAGCGDKEESKTFNANLAGTEISIT YTYKGDKIIKQTSESKISYATVGAKTKEDAAKILDPLSAKYKNIAGVEEKLTYEDTYA QENVSVDMEKVDFKALQQISGTMVSGDTSKGISMKQTQTLLEAAGFKEAK" gene 2252641..2253171 /locus_tag="STM2156A" /db_xref="GeneID:1253678" CDS 2252641..2253171 /locus_tag="STM2156A" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461101.1" /db_xref="GI:16765486" /db_xref="GeneID:1253678" /translation="MQVLRLMALPLFALSLSVSITGCDQKNDTLQGKQNNMTAFIKKI AASKESEETQRYVGNLNGIEIKLTYYYKGDIVLRQISEHKLLYKTLKANNKEEAQKML SQVGEAYQGMPGLTERIDYYDSYATEYVDINFTQAKISDLCKLPGSSIDNCSAYYLSM IRSQKLLEESGYHRIN" gene complement(2253228..2253703) /gene="yehS" /locus_tag="STM2157" /db_xref="GeneID:1253679" CDS complement(2253228..2253695) /gene="yehS" /locus_tag="STM2157" /note="similar to E. coli orf, hypothetical protein (AAC75185.1); Blastp hit to AAC75185.1 (156 aa), 90% identity in aa 1 - 155" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461102.1" /db_xref="GI:16765487" /db_xref="GeneID:1253679" /translation="MLSNDILRSVRYILKANNTDLARILALGNVDATPEQIAIWLRKE EEEGFQRCPDIVLSSFLNGLIYEKRGKDEAAPALTAERRINNNIVLKKLRIAFSLKTD DILAILTGQLFRVSMPEITAMMRAPDHKNFRECGDQFMRYFLRGLAAREHAAK" regulatory complement(2253698..2253703) /regulatory_class="ribosome_binding_site" /gene="yehS" /locus_tag="STM2157" /note="putative RBS for yehS; RegulonDB:STMS1H002301" gene complement(2253742..2254472) /gene="yehT" /locus_tag="STM2158" /db_xref="GeneID:1253680" CDS complement(2253742..2254461) /gene="yehT" /locus_tag="STM2158" /note="similar to E. coli orf, hypothetical protein (AAC75186.1); Blastp hit to AAC75186.1 (244 aa), 94% identity in aa 6 - 244" /codon_start=1 /transl_table=11 /product="two-component system response regulator YehT" /protein_id="NP_461103.1" /db_xref="GI:16765488" /db_xref="GeneID:1253680" /translation="MIKVLIVDDEPLARENLRILLQGQDDIEIVGECANAVEAIGAVH KLRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKP IEEKRLEKTLHRLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMDDVAFVSSRM SGVYVTSSEGKEGFTELTLRTLESRTPLLRCHRQFLVNMAHLQEIRLEDNGQAELILR NGLTVPVSRRYLKSLKEAIGL" gene complement(2254458..2256156) /gene="yehU" /locus_tag="STM2159" /db_xref="GeneID:1253681" CDS complement(2254458..2256143) /gene="yehU" /locus_tag="STM2159" /EC_number="2.7.3.-" /note="similar to E. coli putative 2-component sensor protein (AAC75187.1); Blastp hit to AAC75187.1 (561 aa), 91% identity in aa 1 - 561" /codon_start=1 /transl_table=11 /product="sensor histidine kinase" /protein_id="NP_461104.1" /db_xref="GI:16765489" /db_xref="GeneID:1253681" /translation="MYEFNLVLLLLQQMCVFLVIAWLMSKTRLFIPLMQVTVRLPHKL LCYVTFSIFCIMGTYFGLHIEDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSM GGMTALSCMISTIVEGLLGGLVHSVLIRRGRPDKVFSPLTAGAITCIAELVQMLIILL IARPFDDALHLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAAS TEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPISSG YTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNR LFSSINRTLGEGIAQLLSAQILAGQYERQKALLTQSEIKLLHAQVNPHFLFNALNTIK AVIRRDSEQASQLVQYLSTFFRKNLKRPSEIVTLADEIEHVNAYLQIEKARFQSRLQV QLDVPSTLSRQKLPAFTLQPIVENAIKHGTSQLLDTGNVAIRARREGQHLMLDIEDNA GLYQPSAGSSGLGMSLVDKRLREHFGDDYGISVACEPDCFTRITLRLPLEEDA" regulatory complement(2254467..2254472) /regulatory_class="ribosome_binding_site" /gene="yehT" /locus_tag="STM2158" /note="putative RBS for yehT; RegulonDB:STMS1H002302" regulatory complement(2256151..2256156) /regulatory_class="ribosome_binding_site" /gene="yehU" /locus_tag="STM2159" /note="putative RBS for yehU; RegulonDB:STMS1H002303" gene 2256354..2257097 /gene="yehV" /locus_tag="STM2160" /db_xref="GeneID:1253682" regulatory 2256354..2256359 /regulatory_class="ribosome_binding_site" /gene="yehV" /locus_tag="STM2160" /note="putative RBS for yehV; RegulonDB:STMS1H002304" CDS 2256366..2257097 /gene="yehV" /locus_tag="STM2160" /note="similar to E. coli putative transcriptional regulator (AAC75188.1); Blastp hit to AAC75188.1 (243 aa), 85% identity in aa 1 - 243" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_461105.1" /db_xref="GI:16765490" /db_xref="GeneID:1253682" /translation="MALYTIGEVALLCDINPVTLRAWQRRYGLLKPQRTDGGHRLFND ADIDRIREIKRWIDNGVQVSKVKVLLSSDSSEQPNGWREQQEILLHYLQSSNLHSLRL WVKERGQDYPAQTLTTNLFVPLRRRLQCQQPALQALLGILDGILINYIALCLASARKK QGKDALVIGWNIHDTTRLWLEGWVASQQGWRIDVLAHSLSQFRPELFDGKTLLVWCGE NQTLAQQQQLLAWRAQGRDIHPLGV" gene 2257150..2257264 /locus_tag="STM2161" /db_xref="GeneID:1253683" regulatory 2257150..2257155 /regulatory_class="ribosome_binding_site" /locus_tag="STM2161" /note="putative RBS for STM2161; RegulonDB:STMS1H002305" CDS 2257157..2257264 /locus_tag="STM2161" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461106.1" /db_xref="GI:16765491" /db_xref="GeneID:1253683" /translation="MRVAKIGVIALFLLMAIGGIGGVMLAGYSFILRAG" gene complement(2257245..2257992) /gene="yehW" /locus_tag="STM2162" /db_xref="GeneID:1253684" CDS complement(2257245..2257976) /gene="yehW" /locus_tag="STM2162" /note="similar to E. coli putative transport system permease protein (AAC75189.1); Blastp hit to AAC75189.1 (243 aa), 84% identity in aa 1 - 243" /codon_start=1 /transl_table=11 /product="ABC transporter permease" /protein_id="NP_461107.1" /db_xref="GI:16765492" /db_xref="GeneID:1253684" /translation="MKRLCDPLLWLIVLFLLLLFGLPYSQPFFAALFPDLPRPVYQQE SFAALALAHFWLVGISSLFAVVVGVGAGIAVTRESGKEFRPLVETIAAVGQTFPPVAV LAIAVPVMGFGQQPAIIALILYGVLPILQATLAGLGAVPASVMSVASGMGMSRRQQLY QVELPLAAPVILAGIRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGAL LVALAAIIIDRLFERLTRVLTRHAK" gene complement(2257960..2258920) /gene="yehX" /locus_tag="STM2163" /db_xref="GeneID:1253685" CDS complement(2257960..2258907) /gene="yehX" /locus_tag="STM2163" /note="similar to E. coli putative ATP-binding component of a transport system (AAC75190.1); Blastp hit to AAC75190.1 (308 aa), 87% identity in aa 1 - 307" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_461108.1" /db_xref="GI:16765493" /db_xref="GeneID:1253685" /translation="MIEFNHVSKTFGDQQAVSDLNLHFSEGSFSVLIGTSGSGKSTTL KMINRLVEHDSGTIRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWTVAQNIATVPQL QKWSRARINDRIDELMALLGLESALRDRYPHQLSGGQQQRVGVARALAADPQVLLMDE PFGALDPVTRGALQQEMTRIHQLLGRTIVLVTHDIDEALRLADHLVLMDGGHVIQQGS PLSMLTSPENDFVQAFFGRSELGVRLLSLRSVGDYVRRHEQLSGDALVEEMTLRDALS MFVARRCDVLPVANQQGEPCGTLHFRDLLSETSPRETTV" regulatory complement(2257987..2257992) /regulatory_class="ribosome_binding_site" /gene="yehW" /locus_tag="STM2162" /note="putative RBS for yehW; RegulonDB:STMS1H002306" gene complement(2258900..2260089) /gene="yehY" /locus_tag="STM2164" /db_xref="GeneID:1253686" CDS complement(2258900..2260069) /gene="yehY" /locus_tag="STM2164" /note="similar to E. coli putative transport system permease protein (AAC75191.1); Blastp hit to AAC75191.1 (385 aa), 76% identity in aa 6 - 385" /codon_start=1 /transl_table=11 /product="ABC transporter permease" /protein_id="NP_461109.1" /db_xref="GI:16765494" /db_xref="GeneID:1253686" /translation="MSDAAKKITVNRVLLLLVVLTLLAVALPFINYAPNRLVSGEGRQ LWEIWPATIWMLTGAGCALFTLCFVPGKRGSVLTLMMAQTLFIVMLWGVGRAATQLAQ EGSPLARTSLGSGLWLGLGLMLLACSDAIRRITTGPLWRWLLHAQIVIVPLALLFSGT FDNLSLLKEYTNRQDVFDAALVQHLMLLAGTVLPALAIGLPLGVWCYFSASRQGPVFT VLNVIQTIPSVALFGLLIAPLAGLVKQFPWLAAFGVAGTGMTPALIALVLYALLPLVR GVVAGLNQVPRDVLESARAMGMSSGQRFRHVQLPLALPVFLRSLRVVMVQTVGMAVVA ALIGAGGFGALVFQGLLSSAIDLVLLGVIPVIALAVVIDALFDLWIAFLKGATDD" regulatory complement(2258915..2258920) /regulatory_class="ribosome_binding_site" /gene="yehX" /locus_tag="STM2163" /note="putative RBS for yehX; RegulonDB:STMS1H002307" gene complement(2260073..2261002) /gene="yehZ" /locus_tag="STM2165" /db_xref="GeneID:1253687" CDS complement(2260073..2260990) /gene="yehZ" /locus_tag="STM2165" /note="possibly glycine betaine choline transport for osmoprotection; similar to E. coli putative transport system permease protein (AAC75192.1); Blastp hit to AAC75192.1 (305 aa), 88% identity in aa 1 - 305" /codon_start=1 /transl_table=11 /product="ABC transporter substrate-binding protein" /protein_id="NP_461110.1" /db_xref="GI:16765495" /db_xref="GeneID:1253687" /translation="MTISKLWVSSLALLATVSLPLQAASPVTVGSKIDTEGALLGNMI LQVLESHGVKTVNKIQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAK QGFEKVKKLDAEQNKLVWLTPAPANNTWTIAIRQDIAEKNKLSSLADLSRYLKEGGTF KLAASAEFIERADALPAFEKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMA YGTDGPVAALGLQTLSDPKGVQPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTL QQLNARIAVEGLDAKKVAADYLRQKGWVK" regulatory complement(2260084..2260089) /regulatory_class="ribosome_binding_site" /gene="yehZ" /locus_tag="STM2165" /note="putative RBS for yehY; RegulonDB:STMS1H002308" regulatory complement(2260997..2261002) /regulatory_class="ribosome_binding_site" /gene="yehZ" /locus_tag="STM2165" /note="putative RBS for yehZ; RegulonDB:STMS1H002309" gene complement(2261171..2263480) /gene="bglX" /locus_tag="STM2166" /db_xref="GeneID:1253688" CDS complement(2261171..2263468) /gene="bglX" /locus_tag="STM2166" /EC_number="3.2.1.21" /note="periplasmic beta-glucosidase precursor. (SW:BGLX_SALTY)" /codon_start=1 /transl_table=11 /product="beta-glucosidase" /protein_id="NP_461111.1" /db_xref="GI:16765496" /db_xref="GeneID:1253688" /translation="MKWLCSVGVAVSLAMQPALAENLFGNHPLTPEARDAFVTDLLKK MTVDEKIGQLRLISVGPDNPKEAIREMIKDGQVGAIFNTVTRQDIRQMQDQVMALSRL KIPLFFAYDVVHGQRTVFPISLGLASSFNLDAVRTVGRVSAYEAADDGLNMTWAPMVD VSRDPRWGRASEGFGEDTYLTSIMGETMVKAMQGKSPADRYSVMTSVKHFAAYGAVEG GKEYNTVDMSSQRLFNDYMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRD EWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKAGVDMSMADEYYSKYLPGLIKS GKVTMAELDDATRHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVAR ESVVLLKNRLETLPLKKSGTIAVVGPLADSQRDVMGSWSAAGVANQSVTVLAGIQNAV GDGAKILYAKGANITNDKGIVDFLNLYEEAVKIDPRSPQAMIDEAVQAAKQADVVVAV VGESQGMAHEASSRTNITIPQSQRDLITALKATGKPLVLVLMNGRPLALVKEDQQADA ILETWFAGTEGGNAIADVLFGDYNPSGKLPISFPRSVGQIPVYYSHLNTGRPYNPEKP NKYTSRYFDEANGPLYPFGYGLSYTTFTVSDVTLSSPTMQRDGKVTASVEVTNTGKRE GATVIQMYLQDVTASMSRPVKQLKGFEKITLKPGERKTVSFPIDIEALKFWNQQMKYD AEPGKFNVFIGVDSARVKQGSFELL" regulatory complement(2263475..2263480) /regulatory_class="ribosome_binding_site" /gene="bglX" /locus_tag="STM2166" /note="putative RBS for bglX; RegulonDB:STMS1H002310" gene 2263723..2265465 /gene="dld" /locus_tag="STM2167" /db_xref="GeneID:1253689" regulatory 2263723..2263728 /regulatory_class="ribosome_binding_site" /gene="dld" /locus_tag="STM2167" /note="putative RBS for dld; RegulonDB:STMS1H002311" CDS 2263735..2265465 /gene="dld" /locus_tag="STM2167" /EC_number="1.1.1.28" /note="similar to E. coli D-lactate dehydrogenase, FAD protein, NADH independent (AAC75194.1); Blastp hit to AAC75194.1 (571 aa), 91% identity in aa 1 - 569" /codon_start=1 /transl_table=11 /product="D-lactate dehydrogenase" /protein_id="NP_461112.1" /db_xref="GI:16765497" /db_xref="GeneID:1253689" /translation="MSSITMTDNKTFLNELARLVGHSHLLTDPAKTARYRKGFRSGQG DALAVVFPGSLLELWRVLNACVNADKIILMQAANTGLTEGSTPNGNDYDRDIVIISTQ RLDKLHLLDNGQQVLAWPGTTLYALEKALKPLGREPHSVIGSSCIGASVIGGICNNSG GSLVQRGPAYTEMSLFARIDDQGKLQLVNHLGIDLGHTPEQILSKLDDERIKDEDVRH DGRHAHDHDYVTRVRDINADTPARYNADPDRLFESSGCAGKLAVFAVRLDTFAAEKNQ QVFYIGTNQPAVLTEIRRHILANFDNLPVAGEYMHRDIYDIAEQYGKDTFLMIDKLGT DKMPFFFTLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHL LLKMAGDGVAEAQRWLNEFFKSAEGGFFTCTPEEGSKAFLHRFAAAGAAIRYQAVHAD EVEDILALDIALRRNDTDWFEHLPPEIDSQLVHKLYYGHFMCHVFHQDYIVKKGVDVH ALKAQMLELLQARGAQYPAEHNVGHLYKAPETLTRFYRQNDPTNSMNPGIGKTSKRKF WQENTPDETH" gene complement(2265523..2266483) /gene="pbpG" /locus_tag="STM2168" /db_xref="GeneID:1253690" CDS complement(2265523..2266470) /gene="pbpG" /locus_tag="STM2168" /note="penicillin-binding protein 7 and penicillin-binding protein 8; similar to E. coli penicillin-binding protein 7 (AAC75195.1); Blastp hit to AAC75195.1 (313 aa), 92% identity in aa 4 - 313" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine endopeptidase" /protein_id="NP_461113.1" /db_xref="GI:16765498" /db_xref="GeneID:1253690" /translation="MLKFRASFLSLALMLAVPFAPQAVAKTAATTAASQPEIASGSAM IVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDARLPLDEILKVDISQTPEMKGVY SRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHTR FVEPTGLSIHNVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTNH LVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW IETGKVMPVPAAALSYKKQKAAQMAAASASAGAQTAQND" regulatory complement(2266478..2266483) /regulatory_class="ribosome_binding_site" /gene="pbpG" /locus_tag="STM2168" /note="putative RBS for pbpG; RegulonDB:STMS1H002312" gene complement(2266636..2267234) /gene="yohC" /locus_tag="STM2169" /db_xref="GeneID:1253691" CDS complement(2266636..2267223) /gene="yohC" /locus_tag="STM2169" /note="similar to E. coli orf, hypothetical protein (AAC75196.1); Blastp hit to AAC75196.1 (203 aa), 91% identity in aa 9 - 203" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461114.1" /db_xref="GI:16765499" /db_xref="GeneID:1253691" /translation="MNHVWGLFSHPDREMQVIKSENETVSHHYTHHVLLMAAIPVVCA FIGTTQIGWNFGDGNVLQLSLFTAFALAVLFYGVMLAGVAVMGRVIWWMARNYPQRPS LARCMVFAGYVATPLFLSGLVALYPLVWLCALVGAVALFYTGYLLYLGIPTFLNINRE EGLSFSSSTLAIGVLVLEVLLAITVILWGYGYRLF" regulatory complement(2267229..2267234) /regulatory_class="ribosome_binding_site" /gene="yohC" /locus_tag="STM2169" /note="putative RBS for yohC; RegulonDB:STMS1H002313" gene 2267347..2267951 /gene="yohD" /locus_tag="STM2170" /db_xref="GeneID:1253692" regulatory 2267347..2267352 /regulatory_class="ribosome_binding_site" /gene="yohD" /locus_tag="STM2170" /note="putative RBS for yohD; RegulonDB:STMS1H002314" CDS 2267355..2267951 /gene="yohD" /locus_tag="STM2170" /note="similar to E. coli orf, hypothetical protein (AAC75197.1); Blastp hit to AAC75197.1 (204 aa), 81% identity in aa 13 - 197" /codon_start=1 /transl_table=11 /product="putative DedA family, membrane protein" /protein_id="NP_461115.1" /db_xref="GI:16765500" /db_xref="GeneID:1253692" /translation="MLNAGGGLRMDINTLITHYGYAALVIGSMAEGETVTLLGGVAAH QGLLKFPLVAAAVALGGMMGDQLLYLLGRCYGGKILRRFPRYHTKIRRAQKMIQRHPY LFVIGTRFMYGFRVVGPLLIGASRLPPKIFLPLNIVGALIWALLFTTLGYLGGEVIAP WLHDLDQHLRHGVWLILAIVLVVGVRWWLKRRGKAEAR" gene complement(2268000..2268768) /gene="yohF" /locus_tag="STM2171" /db_xref="GeneID:1253693" CDS complement(2268000..2268761) /gene="yohF" /locus_tag="STM2171" /EC_number="1.-.-.-" /note="similar to E. coli putative oxidoreductase (AAC75198.1); Blastp hit to AAC75198.1 (253 aa), 80% identity in aa 1 - 251" /codon_start=1 /transl_table=11 /product="SDR family oxidoreductase" /protein_id="NP_461116.1" /db_xref="GI:16765501" /db_xref="GeneID:1253693" /translation="MTKVAIVTASDSGIGKACALLLAQNGFDIGITWHSDERGAQETA KKAAQFGVRAETIHLDLSQLPEGAQAIEHLIQRLGRVDVLVNNAGAMTKSAFIDMPFT QWRQIFTVDVDGAFLCAQIAARHMIKQGEGGRIINITSVHEHTPLPQASAYTAAKHAL GGLTKSMALELIEHHILVNAVAPGAIATPMNDMDDSDIEPGSEPSIPIARPGSTHEIA SLVAWLCSEGASYTTGQSLIVDGGFMLANPQFNAK" regulatory complement(2268763..2268768) /regulatory_class="ribosome_binding_site" /gene="yohF" /locus_tag="STM2171" /note="putative RBS for yohF; RegulonDB:STMS1H002315" gene complement(2268827..2270275) /gene="yohG" /locus_tag="STM2172" /db_xref="GeneID:1253694" CDS complement(2268827..2270263) /gene="yohG" /locus_tag="STM2172" /note="similar to E. coli putative channel/filament proteins (AAC75199.1); Blastp hit to AAC75199.1 (398 aa), 85% identity in aa 1 - 396" /codon_start=1 /transl_table=11 /product="multidrug transporter permease" /protein_id="NP_461117.1" /db_xref="GI:16765502" /db_xref="GeneID:1253694" /translation="MNRNSFLAATASLPLFILLAGCAPMHDTRQSLTQQTPSSHVDSS LPAALKNGWPDSQWWKAYHDAQLDALIDNAIQHSPDMQVAEQRIQLAEAQAKAVEAQD GPQLDFSADIERQRMSAEGLMGPFAITDPAAGTTGPWYTNGTFGLTAGWDLDLWGKNR AEVTARIGAVKAREAEQEQTRQLLASGVARLYWEWQTQAALKNVLMQIEHEQQNVVAV NRELYQHGITSSVEGVETDIDASKTQQQLNDVNGKMKVIEARLSALTNTQSAALKLRQ VSLPAVESQLPSQLGYSLLARRADLQAAHWYIESSLSSIDAAKAAFYPDINLMAFLQQ DALHLSDLFRHSAQQYGITGGLTLPIFDSGRLNANLDIAKAQSNLSIANYNKAVVDAV NDVARAASQVETLAQKNQHQQQIEHDAQRVVGLAQARFNAGIIAGSRVSEAKIPALRE QCNGLLLQGQWLDASIQLTSALGGGYHS" regulatory complement(2270270..2270275) /regulatory_class="ribosome_binding_site" /gene="yohG" /locus_tag="STM2172" /note="putative RBS for yohG; RegulonDB:STMS1H002316" gene 2270581..2270664 /locus_tag="STM2173" /db_xref="GeneID:1253695" CDS 2270581..2270664 /locus_tag="STM2173" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_448577.2" /db_xref="GI:1127432619" /db_xref="GeneID:1253695" /translation="MKILLWAILIIFLIGLLVVTGVFKMIF" gene complement(2270722..2271672) /gene="yohI" /locus_tag="STM2174" /db_xref="GeneID:1253696" CDS complement(2270722..2271660) /gene="yohI" /locus_tag="STM2174" /note="similar to E. coli putative regulator protein (AAC75201.1); Blastp hit to AAC75201.1 (315 aa), 89% identity in aa 1 - 312" /codon_start=1 /transl_table=11 /product="tRNA dihydrouridine(16) synthase DusC" /protein_id="NP_461119.1" /db_xref="GI:16765504" /db_xref="GeneID:1253696" /translation="MRVLLAPMEGVLDALVRELLTEVNDYDLCITEFVRVVDQLLPVK VFHRICPELHHASRTPSGTPVRIQLLGQHPQWLAENAARATALGSYGVDLNCGCPSKV VNGSGGGATLLKDPELIYQGAKAMRAAVPSHLPVTVKVRLGWDSGDRKFEIADAVQQA GASELVVHGRTKAQGYRAEHIDWQAIGEIRQRLTIPVIANGEILDWQSAQACMATSGC DAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVTLLQKYTRLEKQGDTGLYHVARIKQW LGYLRKEYIEATELFQSIRALNRSSEIARAIQAIKI" regulatory complement(2271667..2271672) /regulatory_class="ribosome_binding_site" /gene="yohI" /locus_tag="STM2174" /note="putative RBS for yohI; RegulonDB:STMS1H002317" gene complement(2271769..2272969) /locus_tag="STM2175" /db_xref="GeneID:1253697" CDS complement(2271769..2272962) /locus_tag="STM2175" /note="similar to E. coli 3-(3-hydroxyphenyl)propionate hydroxylase (AAC73450.1); Blastp hit to AAC73450.1 (554 aa), 25% identity in aa 12 - 342" /codon_start=1 /transl_table=11 /product="salicylate hydroxylase" /protein_id="NP_461120.1" /db_xref="GI:16765505" /db_xref="GeneID:1253697" /translation="MTHVTSAIIVGGGIGGAATALSLARQGIKVMLLEKAHEIGEIGA GIQLGPNAFSALDSLGVGDVARQRAVFTDHITMMDAVNAEEVVCIETGQAFRDHFGGP YAVIHRVDIHATVWEAVLTHPGVEYRTSTHIVDIRQTPDDVTVFDEQGNSWTADILVG CDGVKSVVRQSLLGDAPRVTGHVVYRAVIDCDDMPDDLRINAPVLWAGPHCHLVHYPL RGGQQYNLVVTFHSRQQEEWGVKDGSKEEVLSYFAGIHPRPRQMLDKPTSWRRWSTAD REPVAKWGTERITLVGDAAHPVAQYMAQGACMALEDAVTLGKALERCDGDAQQAFALY ESVRIPRTARIVWSTREMGRLYHAAGVERQVRNLLWKGKSQEAFYRGIEWLYGWKEDN CLEPR" regulatory complement(2272964..2272969) /regulatory_class="ribosome_binding_site" /locus_tag="STM2175" /note="putative RBS for STM2175; RegulonDB:STMS1H002318" gene complement(2272977..2273628) /locus_tag="STM2176" /db_xref="GeneID:1253698" CDS complement(2272977..2273621) /locus_tag="STM2176" /note="similar to E. coli regulator of transcription; stringent starvation protein A (AAC76261.1); Blastp hit to AAC76261.1 (212 aa), 28% identity in aa 11 - 206" /codon_start=1 /transl_table=11 /product="maleylacetoacetate isomerase" /protein_id="NP_461121.1" /db_xref="GI:16765506" /db_xref="GeneID:1253698" /translation="MKLYSFFNSSASYRVRIALALKGIDYQTVGVNIRIGQQNALAYR RMNPVGLVPTLVTDDGESLGQSLAIVDWLDRHFPQTPLLPTSDPARSQALEIVYAIAC DIHPINNMRVLRYLTDELKVSEEDKKRWYAHWIQQGLSAVEQLLRKSQSGRFCVGDAP GLADCCLIPQWANALRMGCDLSGYPRCKAVYDACVQLPAFIAAAPENQQDKIPA" regulatory complement(2273623..2273628) /regulatory_class="ribosome_binding_site" /locus_tag="STM2176" /note="putative RBS for STM2176; RegulonDB:STMS1H002319" gene complement(2273630..2274336) /locus_tag="STM2177" /db_xref="GeneID:1253699" CDS complement(2273630..2274331) /locus_tag="STM2177" /note="similar to E. coli putative isomerase (AAC74264.1); Blastp hit to AAC74264.1 (219 aa), 38% identity in aa 14 - 211" /codon_start=1 /transl_table=11 /product="5-carboxymethyl-2-hydroxymuconate isomerase" /protein_id="NP_461122.1" /db_xref="GI:16765507" /db_xref="GeneID:1253699" /translation="MTKYVFQPQAPVTVPVAGSDEQFPVRRVYCVGRNYAAHAREMGF DPDREPPFFFCKPADAVVPVAAGDTLELPYPAQTDNYHYEIELVVAIGKKGSDIPLEK AHEYVWGYATGLDMTRRDRQMEMRQMGRPWEIGKAFDLSAPIAPLHKAAETHNVDNAP IWLQVNGEDHQRSDIRHLIWSVNETISYLSGFFELQPGDLIFTGTPEGVGAVVKGDVI TGNVEGLTPIAVKIV" regulatory complement(2274331..2274336) /regulatory_class="ribosome_binding_site" /locus_tag="STM2177" /note="putative RBS for STM2177; RegulonDB:STMS1H002320" gene complement(2274347..2275391) /locus_tag="STM2178" /db_xref="GeneID:1253700" CDS complement(2274347..2275384) /locus_tag="STM2178" /codon_start=1 /transl_table=11 /product="gentisate 1,2-dioxygenase" /protein_id="NP_461123.1" /db_xref="GI:16765508" /db_xref="GeneID:1253700" /translation="MSEINQNVKDSRQQYYQHISGQNLTPLWESLHHLVPQTPNANCA PAYWNYQEIRPLLMESGNVIGAKEAIRRVLVLENPALRGQSSITATLYAGLQLILPGE VAPSHRHNQSALRFIVEGKGAFTAVDGERTPMHTGDFILTPQWRWHDHGNPGSEPVVW LDGLDLPLVNLLGCGFAEDYPEDQQPVTRKEGDYLPRYAANMLPLRHQRGNSSPIFNY RYDRSREALHDLTRMGDPDEWEGYKLRYVNPVTGGYPMPSMGAFLQLLPKGFASRVAR STDSTIYHVVEGAGQVTIGNETFHFSAKDIFVAPTWHEVSFRSSEDTVLFSFSDKPVQ EALGLFREARY" regulatory complement(2275386..2275391) /regulatory_class="ribosome_binding_site" /locus_tag="STM2178" /note="putative RBS for STM2178; RegulonDB:STMS1H002321" gene complement(2275396..2276760) /locus_tag="STM2179" /db_xref="GeneID:1253701" CDS complement(2275396..2276754) /locus_tag="STM2179" /note="similar to E. coli putative transport protein (AAC73456.1); Blastp hit to AAC73456.1 (418 aa), 43% identity in aa 35 - 207, 40% identity in aa 220 - 380, 27% identity in aa 62 - 200" /codon_start=1 /transl_table=11 /product="4-hydroxybenzoate transporter" /protein_id="NP_461124.1" /db_xref="GI:16765509" /db_xref="GeneID:1253701" /translation="MTQRRDLQALIDAAPVGKMQWRVIICCFLVVMLDGFDTAAIGFI APDIRTHWQLSASELAPLFGAGLLGLTAGALLCGPLADRFGRKRVIELCVALFGALSL LSAFSPDIETLVLLRFLTGLGLGGAMPNTITMTSEYLPARRRGALVTLMFCGFTLGSA MGGIVSAQLVPLIGWHGILALGGILPLMLFFGLLFALPESPRWQVRRQLPQAVVARTV SAITGERYHDTQFFLHETAAVAKGSIRQLFAGRQLVITLMLWVVFFMSLLIIYLLSSW MPTLLNHRGIDLQQASWVTAAFQVGGTLGALLLGVLMDRLNPFRVLAVSYALGAVCIV MIGLSENGLWLMALAIFGTGIGISGSQVGLNALTATLYPTQSRATGVSWSNAIGRCGA IVGSLSGGMMMALNFSFDTLFFVIAIPAAISAVMLTLLTVVVRLSISVPDDLPRASVV NE" regulatory complement(2276755..2276760) /regulatory_class="ribosome_binding_site" /locus_tag="STM2179" /note="putative RBS for STM2179; RegulonDB:STMS1H002322" gene 2276873..2277788 /locus_tag="STM2180" /db_xref="GeneID:1253702" regulatory 2276873..2276878 /regulatory_class="ribosome_binding_site" /locus_tag="STM2180" /note="putative RBS for STM2180; RegulonDB:STMS1H002323" CDS 2276880..2277788 /locus_tag="STM2180" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC74504.1); Blastp hit to AAC74504.1 (354 aa), 28% identity in aa 54 - 336" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_461125.1" /db_xref="GI:16765510" /db_xref="GeneID:1253702" /translation="MANWAQKLKLHHLQTLVALGEQGNLTHVARMMNISQPALSKWLS QLEDEIGITLFERHSKGLRPSEGGKLLLQHAQRLINDLERSQYEIARFKQGGLVGSLK IGCSPVATDCVSQAILSLLNEMPTLHLNIEEKVMTPLLHDLLAGQVDVVVGRVGGRAL QLPLNYQVLYTEPVCFVARPHHPLAARAQIAWSDLAHWRWIVWPTGTPIRISIDNALV DNGVMLPENTIESASMNVSTNLLQSSDMISILSLRLAQRYASQGQLAILNLPKIEQKG SVGMFWRKNETPSLALSRFLYFLAQV" gene 2277907..2278318 /gene="yohJ" /locus_tag="STM2181" /db_xref="GeneID:1253703" regulatory 2277907..2277912 /regulatory_class="ribosome_binding_site" /gene="yohJ" /locus_tag="STM2181" /note="putative RBS for yohJ; RegulonDB:STMS1H002324" CDS 2277920..2278318 /gene="yohJ" /locus_tag="STM2181" /note="similar to E. coli orf, hypothetical protein (AAC75202.1); Blastp hit to AAC75202.1 (132 aa), 91% identity in aa 1 - 132" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461126.1" /db_xref="GI:16765511" /db_xref="GeneID:1253703" /translation="MSKSLNIIWQYIRAFVLIYACLYAGIFLASLLPITIPGSIIGML ILFVLLALQILPAKWVNPGCYVLIRYMALLFVPIGVGVMQYFDLLRAQFGPVVVSCAI STLVVFVVVSWSSHLIHGERKVVGQKGTKK" gene 2278301..2279010 /gene="yohK" /locus_tag="STM2182" /db_xref="GeneID:1253704" regulatory 2278301..2278306 /regulatory_class="ribosome_binding_site" /gene="yohJ" /locus_tag="STM2181" /note="putative RBS for yohK; RegulonDB:STMS1H002325" CDS 2278315..2279010 /gene="yohK" /locus_tag="STM2182" /note="similar to E. coli putative seritonin transporter (AAC75203.1); Blastp hit to AAC75203.1 (231 aa), 90% identity in aa 1 - 230" /codon_start=1 /transl_table=11 /product="CidB/LrgB family autolysis modulator" /protein_id="NP_461127.1" /db_xref="GI:16765512" /db_xref="GeneID:1253704" /translation="MMTYIWWSLPLTLAVFFAARRLAAHFKMPLLNPLLVAMVVIIPF LLLTGIPYEHYFKGSEVLNDLLQPAVVALAYPLYEQLHQIRARWKSIISICFVGSLVA MITGTSVALLMGATPEIAASVLPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAV FGHTLLNAMHIRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVICGIITSLV APFLFPLILAVMR" gene 2279153..2280048 /gene="cdd" /locus_tag="STM2183" /db_xref="GeneID:1253705" regulatory 2279153..2279158 /regulatory_class="ribosome_binding_site" /gene="cdd" /locus_tag="STM2183" /note="putative RBS for cdd; RegulonDB:STMS1H002326" CDS 2279164..2280048 /gene="cdd" /locus_tag="STM2183" /EC_number="3.5.4.5" /note="similar to E. coli cytidine/deoxycytidine deaminase (AAC75204.1); Blastp hit to AAC75204.1 (294 aa), 87% identity in aa 1 - 293" /codon_start=1 /transl_table=11 /product="cytidine deaminase" /protein_id="NP_461128.1" /db_xref="GI:16765513" /db_xref="GeneID:1253705" /translation="MHPRFQTAFAQLADNLQSALAPILADHHFPAMLTAEQVSTLKNT AGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANMEFLGATMQQTVH AEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPGRAPHTLRDY LPDAFGPKDLEIKTLLMDEQDHGFTLTGDTLTQAAITAANKSHMPYSHSPSGVALECK DGRIFTGSYAENAAFNPTLPPLQGALNLLSLNGYDYADIQRAILAEKGDAALIQWDAT AATLKALGCHNIDRVLLG" gene 2280206..2280944 /gene="sanA" /locus_tag="STM2184" /db_xref="GeneID:1253706" regulatory 2280206..2280211 /regulatory_class="ribosome_binding_site" /gene="sanA" /locus_tag="STM2184" /note="putative RBS for sanA; RegulonDB:STMS1H002327" CDS 2280225..2280944 /gene="sanA" /locus_tag="STM2184" /note="similar to E. coli vancomycin sensitivity (AAC75205.1); Blastp hit to AAC75205.1 (239 aa), 93% identity in aa 1 - 239" /codon_start=1 /transl_table=11 /product="vancomycin high temperature exclusion protein" /protein_id="NP_461129.1" /db_xref="GI:16765514" /db_xref="GeneID:1253706" /translation="MLKRVFYSLLVLVGLLLLTVLGLDRWMSWKTAPYIYDELQDLPY RQVGVVLGTAKYYRKGVINQYYRYRIQGALNAYNSGKVNYLLLSGDNALQSYNEPMTM RKDLIAAGVDPADIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHM GIQAQCYAVPSPKNMLTVRLREFGARFSALADLYIFKREPRFLGPLVPIPTQHQVPND AQGYPAVTPEQLLELEKKKGK" gene 2280921..2281186 /gene="b2145" /locus_tag="STM2185" /db_xref="GeneID:1253707" regulatory 2280921..2280926 /regulatory_class="ribosome_binding_site" /gene="b2145" /locus_tag="STM2185" /note="putative RBS for b2145; RegulonDB:STMS1H002328" CDS 2280941..2281186 /gene="b2145" /locus_tag="STM2185" /note="similar to E. coli orf, hypothetical protein (AAC75206.1); Blastp hit to AAC75206.1 (79 aa), 59% identity in aa 1 - 79" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461130.1" /db_xref="GI:16765515" /db_xref="GeneID:1253707" /translation="MIMDVQTIFVILAFLLLPLFCFREAWKGWRTGAVDKVVKNARKP VYVYRHADPVQYWSYLFLYTGCGFLFTGMIIYLLFYR" gene 2281379..2282632 /locus_tag="STM2186" /db_xref="GeneID:1253708" regulatory 2281379..2281384 /regulatory_class="ribosome_binding_site" /locus_tag="STM2186" /note="putative RBS for STM2186; RegulonDB:STMS1H002329" CDS 2281391..2282632 /locus_tag="STM2186" /note="similar to E. coli putative oxidoreductase (AAC75207.1); Blastp hit to AAC75207.1 (412 aa), 84% identity in aa 1 - 412" /codon_start=1 /transl_table=11 /product="dihydropyrimidine dehydrogenase subunit A" /protein_id="NP_461131.1" /db_xref="GI:16765516" /db_xref="GeneID:1253708" /translation="MPQQNYLDELTPGFTPLLAIKEASRCLLCHDAPCSQACPAQTDP GKFIRSIYFRNFKGAAETIRENNALGAVCARVCPTEKLCQRGCTRSGIDKPIDIARLQ RFITDFEQQTAMQIYQPGSKTRGKVAIIGAGPAGLQASVTLTHLGYDVTIYEKQPQPG GWLRHGIPAFRLPQSVLDQEIARIVEMGVNIKCNCEVGGSLSLAQLKAEYRAVLMTVG MSCGSGLPLFEQASHVEIAVDFLQRARQADGDISVPRSALIIGGGDVAMDVASTLKIL GCPSVTCVAREELAEFPASEKEFTSTQALGVSIIDGFTPVAVSGNKVTFHHVRHSGEL TLEAENIILAVGQHARLDTFAEIKAQHNIIDTHNYQTDDPAIFAAGDIVKGDKTVVYA VKTGKEAAQAIHHYLEEACSC" gene 2282612..2283861 /gene="yeiA" /locus_tag="STM2187" /db_xref="GeneID:1253709" regulatory 2282612..2282617 /regulatory_class="ribosome_binding_site" /gene="yeiA" /locus_tag="STM2187" /note="putative RBS for yeiA; RegulonDB:STMS1H002330" CDS 2282626..2283861 /gene="yeiA" /locus_tag="STM2187" /note="similar to E. coli putative oxidoreductase (AAC75208.1); Blastp hit to AAC75208.1 (413 aa), 93% identity in aa 3 - 413" /codon_start=1 /transl_table=11 /product="dihydropyrimidine dehydrogenase subunit B" /protein_id="NP_461132.1" /db_xref="GI:16765517" /db_xref="GeneID:1253709" /translation="MLTKDLSVTFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGI VFKTIGFFIANEVSPRFDHLTKEDTGFIGFKNMEQIAEHPLEENLAAIRRLKQDYPDK VLIASIMGENEQQWQELARLVEEAGADMIECNFSCPQMTSHAMGSDVGQSPELVEKYC RAVKRGSSLPMLAKMTPNIGDMCEVALAAKRGGADGIATINTVKSITNIDLNRKIGMP VVNGKSSISGYSGKAVKPIALRFIQQLRMHPELRDFPISGIGGIETWEDAAEFLLLGA ATLQVTTGIMQYGYRIVEDMASGLSHYLADQGFASLQEMIGLANGNIIPAEDLDRSYI VYPRINQEKCVGCGRCYISCYDGGHQAMEWDEHSRTPHCNTEKCVGCLLCGHVCPVAC IDLGEVKFKKGEKEHALTL" gene complement(2283936..2284958) /gene="mglC" /locus_tag="STM2188" /db_xref="GeneID:1253710" CDS complement(2283936..2284946) /gene="mglC" /locus_tag="STM2188" /note="ABC superfamily (membrane); galactoside transport system permease protein MGLC. (SW:MGLC_SALTY)" /codon_start=1 /transl_table=11 /product="galactoside ABC transporter permease MglC" /protein_id="NP_461133.1" /db_xref="GI:16765518" /db_xref="GeneID:1253710" /translation="MSALNKKSFLTWLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSN ILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMENANKVFPEMAT MPIALVILIVCAIGAVIGLVNGIIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASP ISGFDSGFSTFAQGFVAMGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPE AAKVSGVNVALNLLMIYALSGVFYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGG VSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALDSLKYAR KK" regulatory complement(2284953..2284958) /regulatory_class="ribosome_binding_site" /gene="mglC" /locus_tag="STM2188" /note="putative RBS for mglC; RegulonDB:STMS1H002331" gene complement(2284962..2286494) /gene="mglA" /locus_tag="STM2189" /db_xref="GeneID:1253711" CDS complement(2284962..2286482) /gene="mglA" /locus_tag="STM2189" /note="ABC superfamily (atp_bind); galactoside transport ATP-binding protein MGLA. (SW:MGLA_SALTY)" /codon_start=1 /transl_table=11 /product="galactose/methyl galactoside ABC transporter ATP-binding protein MglA" /protein_id="NP_461134.1" /db_xref="GI:16765519" /db_xref="GeneID:1253711" /translation="MGSTISPPSGEYLLEMRGINKSFPGVKALDNVNLNVRPHSIHAL MGENGAGKSTLLKCLFGIYQKDSGSIVFQGKEVDFHSAKEALENGISMVHQELNLVLQ RSVMDNMWLGRYPTKGMFVDQDKMYQDTKAIFDELDIDIDPRARVGTLSVSQMQMIEI AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDE ITILRDGQWIATQPLEGLDMDKIIAMMVGRSLNQRFPDKENKPGDVILEVRHLTSLRQ PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSSGTITLHGKKINNHTANE AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDS MRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIA ELAKKGKGIIIISSEMPELLGITDRILVMSNGLVSGIVDTKTTTQNEILRLASLHL" regulatory complement(2286489..2286494) /regulatory_class="ribosome_binding_site" /gene="mglA" /locus_tag="STM2189" /note="putative RBS for mglA; RegulonDB:STMS1H002332" gene complement(2286616..2287675) /gene="mglB" /locus_tag="STM2190" /db_xref="GeneID:1253712" CDS complement(2286616..2287614) /gene="mglB" /locus_tag="STM2190" /note="ABC superfamily (peri_perm); D-galactose-binding periplasmic protein precursor (GDP) (D-galactose/D-glucose binding protein) (GGBP). (SW:DGAL_SALTY)" /codon_start=1 /transl_table=11 /product="methyl-galactoside ABC transporter substrate-binding protein" /protein_id="NP_461135.1" /db_xref="GI:16765520" /db_xref="GeneID:1253712" /translation="MNKKVLTLSAVMASLLFGAHAHAADTRIGVTIYKYDDNFMSVVR KAIEKDGKSAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK ARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGVIQGDLIAKHWQANQGWDLNK DGKIQYVLLKGEPGHPDAEARTTYVVKELNDKGIQTEQLALDTAMWDTAQAKDKMDAW LSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGAMAGT VLNDANNQAKATFDLAKNLAEGKGAADGTSWKIENKIVRVPYVGVDKDNLSEFTQK" regulatory complement(2287620..2287625) /regulatory_class="ribosome_binding_site" /gene="mglB" /locus_tag="STM2190" /note="putative RBS for mglB; RegulonDB:STMS1H002333" regulatory complement(2287651..2287659) /regulatory_class="minus_10_signal" /gene="mglB" /locus_tag="STM2190" /note="putative -10_signal for mglB; RegulonDB:STMLTH004526" regulatory complement(2287667..2287675) /regulatory_class="minus_35_signal" /gene="mglB" /locus_tag="STM2190" /note="putative -35_signal for mglB; RegulonDB:STMLTH004526" protein_bind complement(2287846..2287866) /note="putative binding site for CRP, RegulonDB: STMS1H000067" /bound_moiety="CRP" gene complement(2288113..2289224) /gene="galS" /locus_tag="STM2191" /db_xref="GeneID:1253713" CDS complement(2288113..2289135) /gene="galS" /locus_tag="STM2191" /note="similar to E. coli mgl repressor, galactose operon inducer (AAC75212.1); Blastp hit to AAC75212.1 (346 aa), 88% identity in aa 1 - 340" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator GalS" /protein_id="NP_461136.1" /db_xref="GI:16765521" /db_xref="GeneID:1253713" /translation="MITIRDVARQAGVSVATVSRVLNNSALVSPDTRDAVMQAVTLLG YRPNANAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAE KERHAIEVLIRQRCNALIVHSKALTDRELSDFMDQIPGMVLINRIVPGYAHRCVCLDN VSGARMATRMLLNNGHQRIGYLASSHRIEDDAMRREGWLHALQEQGIAASESWIGTGT PDMQGGESAMVELLGRNLQLTAVFAYNDNMAAGALTALKDNGIAIPLHLSVIGFDDIP IARYTDPQLTTVRYPIASMAKIATELALQGAAGTLDITATHCFMPTLVRRHSVAWRQN AVLITN" protein_bind complement(2289121..2289128) /gene="galS" /locus_tag="STM2191" /note="putative binding site for GalS, RegulonDB: STMS1H000197" /bound_moiety="GalS" regulatory complement(2289143..2289148) /regulatory_class="ribosome_binding_site" /gene="galS" /locus_tag="STM2191" /note="putative RBS for galS; RegulonDB:STMS1H002334" regulatory complement(2289200..2289208) /regulatory_class="minus_10_signal" /gene="galS" /locus_tag="STM2191" /note="putative -10_signal for galS; RegulonDB:STMLTH004527" protein_bind complement(2289216..2289236) /note="putative binding site for CRP, RegulonDB: STMS1H000099" /bound_moiety="CRP" regulatory complement(2289216..2289224) /regulatory_class="minus_35_signal" /gene="galS" /locus_tag="STM2191" /note="putative -35_signal for galS; RegulonDB:STMLTH004527" gene complement(2289285..2290436) /gene="yeiB" /locus_tag="STM2192" /db_xref="GeneID:1253714" CDS complement(2289285..2290427) /gene="yeiB" /locus_tag="STM2192" /note="similar to E. coli orf, hypothetical protein (AAC75213.1); Blastp hit to AAC75213.1 (385 aa), 84% identity in aa 1 - 377" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461137.1" /db_xref="GI:16765522" /db_xref="GeneID:1253714" /translation="MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAIVP EDAWSWAILDIVAQAKFLTLFALLFGAGLQMLLPRGKQWIQSRLTLLVLLGFIHALFF WDGDILLAYGLVGLICWRLIRDAPSVKSLFNTGILLYLVGIGVLLLLGVVSSSETSRA WTPDASAILYEKYWKLNGGMEAISNRAEMLSNSLLALGAQYGWQLAGMMLLGAALMRS GWLKGQYSLRHYRRTGALLVALGLMINLPAVILQWRLDWAYRWCAFLLQAPRELSAPL QTLGYAALMFGFWPQLSRCRLTLAIACVGRMALTNYLLQTIICTTLFYQFGLFMKFNR LELLFFVVPVWAINLLFSVIWLRFWRQGPVEWLWRQLTLRASGSLR" protein_bind complement(2289329..2289336) /gene="yeiB" /locus_tag="STM2192" /note="putative binding site for GalS, RegulonDB: STMS1H000196" /bound_moiety="GalS" regulatory complement(2290431..2290436) /regulatory_class="ribosome_binding_site" /gene="yeiB" /locus_tag="STM2192" /note="putative RBS for yeiB; RegulonDB:STMS1H002335" gene complement(2290442..2291126) /gene="folE" /locus_tag="STM2193" /db_xref="GeneID:1253715" CDS complement(2290442..2291110) /gene="folE" /locus_tag="STM2193" /EC_number="3.5.4.16" /note="similar to E. coli GTP cyclohydrolase I (AAC75214.1); Blastp hit to AAC75214.1 (222 aa), 96% identity in aa 1 - 221" /codon_start=1 /transl_table=11 /product="GTP cyclohydrolase I FolE" /protein_id="NP_461138.1" /db_xref="GI:16765523" /db_xref="GeneID:1253715" /translation="MPSLSKEAALVHDALVARGLETPLRPPMDELDNETRKSLIAGHM TEIMQLLNLDLSDDSLMETPHRIAKMYVDEIFAGLDYANFPKITLIENKMKVDEMVTV RDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQIL TALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRQEFLRAV RHHP" regulatory complement(2291121..2291126) /regulatory_class="ribosome_binding_site" /gene="folE" /locus_tag="STM2193" /note="putative RBS for folE; RegulonDB:STMS1H002336" regulatory 2291427..2291432 /regulatory_class="ribosome_binding_site" /note="putative RBS for yeiG; RegulonDB:STMS1H002337" gene 2291440..2292297 /gene="yeiG" /locus_tag="STM2194" /db_xref="GeneID:1253716" CDS 2291440..2292297 /gene="yeiG" /locus_tag="STM2194" /EC_number="3.1.1.1" /note="similar to E. coli putative esterase. (AAC75215.1); Blastp hit to AAC75215.1 (278 aa), 86% identity in aa 1 - 241" /codon_start=1 /transl_table=11 /product="S-formylglutathione hydrolase" /protein_id="NP_461139.2" /db_xref="GI:1109557679" /db_xref="GeneID:1253716" /translation="MEMLEEHRCFGGWQQRWRHHAATLNCAMTFSIFLPPTQDNEPPP VLYWLSGLTCNDENFTTKAGAQRIAAELGIVLVMPDTSPRGEQVADDSGYDLGHGAGF YLNATQPPWASHYRMYDYLRDELPALIQTQFNVSDRCAISGHSMGGHGALIMALKNPG KYTSVSAFAPIVNPSRVPWGIKALTAYLGEDESAWTEWDSCELMLASQPQDAIPVLID QGDSDQFLADQLQPAVLAEAARQTAWPMTLRIQPGYDHSYYFIASFIEDHLRFHARYL RDERETSPT" gene complement(2292286..2292681) /locus_tag="STM2195" /db_xref="GeneID:1253717" CDS complement(2292286..2292675) /locus_tag="STM2195" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_461140.1" /db_xref="GI:16765525" /db_xref="GeneID:1253717" /translation="MKYNTMNNDEIILSLCARLKETRLSLSMTQQQLADRAHVGIATI KRIEKGGGLNLDTLISLLRALDKLHNLDAVLFESELRNFHESYEGGEGSGRLQVRQQA ADLNNKSSAPQSEEVNYSAALENSLCW" regulatory complement(2292676..2292681) /regulatory_class="ribosome_binding_site" /locus_tag="STM2195" /note="putative RBS for STM2195; RegulonDB:STMS1H002338" gene complement(2292680..2294053) /locus_tag="STM2196" /db_xref="GeneID:1253718" CDS complement(2292680..2294047) /locus_tag="STM2196" /note="similar to E. coli L-serine deaminase (AAC74884.1); Blastp hit to AAC74884.1 (454 aa), 48% identity in aa 1 - 452" /codon_start=1 /transl_table=11 /product="L-serine ammonia-lyase" /protein_id="NP_461141.1" /db_xref="GI:16765526" /db_xref="GeneID:1253718" /translation="MESCLDIFKIVIGPSSSRTVGPMRAACHFISLLREQETLPLIRE IEIELYGALSLSRKCHNVDTALYLGLLGCQPENVDLRSYMAVIKRAENENKIELPLSD AGGITIKVKIIANHQAHPGHPYAMTFRARDDYFTVYEETWFSTGAGQVRKHGEPLTPS LPLRTVSPFEFSHAAQLLALCRRNGLSVAALMMKNELCRHSPQTLQNYLAQIWDVMQQ AVYRGLHTEGVLPGPYQVPRRACALHKTLQANRSASDFLTALNWVNAFAIAVSEENAS GGQIVTAPTNGACGIIPAALCWYDKFVTPLEPGALTRFFLTAAAIAMLFKQNASILGS EVGCQGEIGVACSMAAAGLAELMGASVEQTLSAAEIAMEHHLGLTCDPLGGQVQIPCI ERNAISAVKAINAATMAMSRVSEPCISLDEIIAAMYETGKDMSAKYRETYHGSLGKIQ PRKRG" regulatory complement(2294048..2294053) /regulatory_class="ribosome_binding_site" /locus_tag="STM2196" /note="putative RBS for STM2196; RegulonDB:STMS1H002339" gene 2294259..2295151 /locus_tag="STM2197" /db_xref="GeneID:1253719" regulatory 2294259..2294264 /regulatory_class="ribosome_binding_site" /locus_tag="STM2197" /note="putative RBS for STM2197; RegulonDB:STMS1H002340" CDS 2294264..2295151 /locus_tag="STM2197" /note="similar to E. coli 3-phosphoserine phosphatase (AAC77341.1); Blastp hit to AAC77341.1 (322 aa), 39% identity in aa 111 - 305" /codon_start=1 /transl_table=11 /product="phosphoserine phosphatase SerB" /protein_id="NP_461142.1" /db_xref="GI:16765527" /db_xref="GeneID:1253719" /translation="MSIIYFITTQDIDTFQKKLQETLFNAVTMPFPLLFDKRYAALIN TAYLKLTLPAECLTPEFYRYLRELSLQWQFDFFIKPQPLPANGIIAFDMDSTFIAEEG VDEIARELGMSTQITAITQQAMEGKLDFNASFTRRIGMLKGTPKAVLNAVCDRMTLSP GLLTILPVIKAKGFKTAIISGGLDIFTQRLKERYQLDYAFSNTVEIRDNVLTDNITLP IMNAANKKQTLVDLAARLNIATENIIACGDGANDLPMLEHAGTGIAWKAKPVVRKKIH HQINYHGFELLLFLIEDEL" gene 2295178..2296506 /locus_tag="STM2198" /db_xref="GeneID:1253720" regulatory 2295178..2295183 /regulatory_class="ribosome_binding_site" /locus_tag="STM2198" /note="putative RBS for STM2198; RegulonDB:STMS1H002341" CDS 2295184..2296506 /locus_tag="STM2198" /note="similar to E. coli regulator of uhpT (AAC76690.1); Blastp hit to AAC76690.1 (440 aa), 39% identity in aa 5 - 428" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_461143.1" /db_xref="GI:16765528" /db_xref="GeneID:1253720" /translation="MSIKTFIFSQPDKPIVKEKKEIDQTYKKFRFEIIASVFISYAVF YLTRKNFSAAMPAMLTETSLTAEDFAIMSSIFYILYGAMKFVGGMLVDKINPKAMTGP VLIGVGIVNILFGFSDSVAAFYVLYSLNAILQGTSFPPMAKIMASWFSKNERGRWWAI VEAAHNIGGSLAPLLTSFAIAFSGSWKMGFYVPGAISLLMGIVALFTIKDRPGTLGLP NVGQWRNDPTELAQVKASPVNLSFWQIFVKYILTNPLVWIIIIGDMSVYIARTILNDW PQIYYSQVHGWSLIKANSIISWFEAGGLAGGLLAGYLSDFMFKSNRWMTGLIFALALC ICIVLVPLVQDTSYTLTAILFTIMGFALYGPHMLFAVGCLDVTHKDAAGSITGFRGLF SYVGAAMAGVPVIMVKNSWAWSGVYIYAVIAILLTTLSLALLSRLHRL" gene complement(2296550..2298554) /gene="cirA" /locus_tag="STM2199" /db_xref="GeneID:1253721" CDS complement(2296550..2298541) /gene="cirA" /locus_tag="STM2199" /note="receptor for colicin I; requires TonB; similar to E. coli outer membrane receptor for iron-regulated colicin I receptor; porin; requires tonB gene product (AAC75216.1); Blastp hit to AAC75216.1 (663 aa), 88% identity in aa 1 - 663" /codon_start=1 /transl_table=11 /product="catecholate siderophore receptor CirA" /protein_id="NP_461144.1" /db_xref="GI:16765529" /db_xref="GeneID:1253721" /translation="MFRFNPFVRVGLCMSAVTLAWPVAAATDDGETMVVTASAIEQNL KDAPASISVITQQDLQRRPVQNLKDVLKEVPGVQLTNEGDNRKGVSIRGLDSSYTLIL IDGKRVNSRNAVFRHNDFDLNWIPVDAIERIEVVRGPMSSLYGSDALGGVVNIITKKI GQKWHGSVTVDSTIQEHRDRGDTYNGQFFTSGPLIDGVLGMKAYGSLAKREKDEQQSS ATTATGETPRIEGFTSRDGNVEFAWTPNENHDVTAGYGFDRQDRDSDSLDKNRLERQN YALSHNGRWDLGNSELKFYGEKVENKNPGNSSPITSESNSIDGKYVLPLASVNQFLTF GGEWRHDKLSDAVNLTGGSSTKTSASQYALFLEDEWRIFEPLALTTGIRMDDHETYGD HWSPRAYLVYNATDTLTVKGGWATAFKAPSLLQLSPDWATNSCRGGCRIVGSPDLKPE TSESWELGLYYRGEEGILEGVEASVTTFRNDVDNRISISRTPDVNAAPGYSNFVGFET NSRGQRVPVFRYYNVNKARIQGVETELKVPFNEAWKLSLNYTYNDGRDVSNGGNKPLS DLPFHTANGTLDWKPVQLEDWSFYVSGNYTGRKRADSATAKTPGGYVVWDTGAAWQAT KNVKLRAGVLNVGDKDLKRDDYGYTEDGRRYFMAVDYRF" regulatory complement(2298549..2298554) /regulatory_class="ribosome_binding_site" /gene="cirA" /locus_tag="STM2199" /note="putative RBS for cirA; RegulonDB:STMS1H002342" protein_bind complement(2298725..2298745) /note="putative binding site for Fur, RegulonDB: STMS1H000191" /bound_moiety="Fur" protein_bind complement(2298737..2298757) /note="putative binding site for Fur, RegulonDB: STMS1H000189" /bound_moiety="Fur" gene complement(2298887..2300373) /gene="lysP" /locus_tag="STM2200" /db_xref="GeneID:1253722" CDS complement(2298887..2300356) /gene="lysP" /locus_tag="STM2200" /note="similar to E. coli lysine-specific permease (AAC75217.1); Blastp hit to AAC75217.1 (489 aa), 94% identity in aa 1 - 489" /codon_start=1 /transl_table=11 /product="lysine transporter" /protein_id="NP_461145.1" /db_xref="GI:16765530" /db_xref="GeneID:1253722" /translation="MGSKTKTTEAPALRRELKARHLTMIAIGGSIGTGLFVASGATIS QAGPGGALFSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNY WYNWAVTIAVDLVAAQLVMGWWFPDTPGWIWSALFLCVIFLLNYISVRGFGEAEYWFS LIKVATVIIFIIVGVAMIIGIFKGVEPVGWSNWTTGDAPFAGGFAAMIGVAMIVGFSF QGTELIGIAAGESENPEKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPNLLRNDV KDISVSPFTLVFQHAGLLSAAAIMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPR IFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAIS HYRFRRGYVLQGYDVNDLPYRSGFFPLGPIFAFVLCLIITLGQNYEAFLKDTIDWGGV AATYIGIPLFLLIWFGYKLIKGTHFVRYSEMHFPERVKK" regulatory complement(2300368..2300373) /regulatory_class="ribosome_binding_site" /gene="lysP" /locus_tag="STM2200" /note="putative RBS for lysP; RegulonDB:STMS1H002343" gene complement(2300546..2301422) /gene="yeiE" /locus_tag="STM2201" /db_xref="GeneID:1253723" CDS complement(2300546..2301409) /gene="yeiE" /locus_tag="STM2201" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC75218.1); Blastp hit to AAC75218.1 (293 aa), 91% identity in aa 1 - 287" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_461146.1" /db_xref="GI:16765531" /db_xref="GeneID:1253723" /translation="MHITLRQLEVFAEVLKSGSTTQASVMLSLSQSAVSAALTDLEGQ LGVQLFDRVGKRLVVNEHGRLLYPRALALLEQAIEIEQLFREDNGAIRVYASSTIGNY ILPAMIARYRQHYPALPLELSVGNSQDVINAVLDFRVDIGLIEGPCHSTEIISEPWLE DELVVFAAPSSPLTQGPVTLEQLAASPWILRERGSGTREIVDYLLLSHLPRFHMAMEL GNSEAIKHAVRHGLGISCLSRRVIAEQLQAGTLGEVAVPLPRLVRTLWRVHHRQKHLS NALQRFLSYCE" regulatory complement(2301417..2301422) /regulatory_class="ribosome_binding_site" /gene="yeiE" /locus_tag="STM2201" /note="putative RBS for yeiE; RegulonDB:STMS1H002344" gene 2301518..2302579 /gene="yeiH" /locus_tag="STM2202" /db_xref="GeneID:1253724" regulatory 2301518..2301523 /regulatory_class="ribosome_binding_site" /gene="yeiH" /locus_tag="STM2202" /note="putative RBS for yeiH; RegulonDB:STMS1H002345" CDS 2301530..2302579 /gene="yeiH" /locus_tag="STM2202" /note="similar to E. coli orf, hypothetical protein (AAC75219.1); Blastp hit to AAC75219.1 (349 aa), 88% identity in aa 1 - 349" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461147.1" /db_xref="GI:16765532" /db_xref="GeneID:1253724" /translation="MTELTLQNHCRTMWHFIPGLALSAVITGVALWGGAIPAVAGAGF SALTLAILLGMVIGNTIYPQIWKQCDGGVLFAKQHLLRLGIILYGFRLTFSQIADVGI SGIVIDVLTLSSTFMLACFLGQKVFGLDRHTSWLIGAGSSICGAAAVLATEPVVKAEA SKVTVAVATVVIFGTIAIFLYPAMYPLLAHWFSPETYGIYIGSTMHEVAQVVAAGHAV SPDAENAAVIAKMLRVMMLAPFLIILAARVKQLSPATGAEKSKITIPWFAIFFIVVAI FNSFHLLPKAVVDMLVTLDTVLLAMAMAALGLTTHVSALKKAGAKPLLMALALFAWLI IGGGAINVLIHSLIA" protein_bind 2302575..2302595 /note="putative binding site for SoxS, RegulonDB: STMS1H000368" /bound_moiety="SoxS" gene 2302588..2303515 /gene="nfo" /locus_tag="STM2203" /db_xref="GeneID:1253725" regulatory 2302588..2302596 /regulatory_class="minus_35_signal" /gene="nfo" /locus_tag="STM2203" /note="putative -35_signal for nfo; RegulonDB:STMLTH004528" regulatory 2302612..2302620 /regulatory_class="minus_10_signal" /gene="nfo" /locus_tag="STM2203" /note="putative -10_signal for nfo; RegulonDB:STMLTH004528" regulatory 2302646..2302651 /regulatory_class="ribosome_binding_site" /gene="nfo" /locus_tag="STM2203" /note="putative RBS for nfo; RegulonDB:STMS1H002346" CDS 2302658..2303515 /gene="nfo" /locus_tag="STM2203" /EC_number="3.1.21.2" /note="similar to E. coli endonuclease IV (AAC75220.1); Blastp hit to AAC75220.1 (285 aa), 88% identity in aa 1 - 285" /codon_start=1 /transl_table=11 /product="deoxyribonuclease IV" /protein_id="NP_461148.1" /db_xref="GI:16765533" /db_xref="GeneID:1253725" /translation="MKYIGAHVSAAGGLANAPARAAEIGATAFALFTKNQRQWRAAPL TPQVIDDFKIACEKYHFSAAQILPHDSYLINLGHPVSEALEKSRDAFLDEMQRCEQLG LTLLNFHPGSHLMQIAQEDCLARIAESINIALAQTEGVTAVIENTAGQGSNLGFEFEQ LAAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPEACEKTFAEFGKIVGFQYLRGMHLN DAKSAFGSRVDRHHSLGEGNIGHDAFRWIMQDGRFDGIPLILETINPDIWAEEIAWLK AQQIAEAMA" gene complement(2303580..2305281) /gene="fruA" /locus_tag="STM2204" /db_xref="GeneID:1253726" CDS complement(2303580..2305268) /gene="fruA" /locus_tag="STM2204" /EC_number="2.7.1.191" /note="Sugar Specific PTS system; similar to E. coli PTS system, fructose-specific transport protein (AAC75228.1); Blastp hit to AAC75228.1 (563 aa), 92% identity in aa 1 - 563" /codon_start=1 /transl_table=11 /product="PTS fructose transporter subunit IIBC" /protein_id="NP_461149.1" /db_xref="GI:16765534" /db_xref="GeneID:1253726" /translation="MKTLLIIDANLGQARAYMAKTLLGAAAHKANLEIIDNPNDAELA IVLGESLPNDNALNGKKVWLGDIGRAVAHPELFLSEAKSHATPYSAPAAAVPAASGGP KRVVAVTACPTGVAHTFMAAEAIETEAKKRGWWVKVETRGSVGAGNAITPEEVAEADL VIVAADIEVDLAKFAGLPMYRTSTGLALKKTAQELDKAVAEATPYQPAGKASQAATEG KKESAGAYRHLLTGVSYMLPMVVAGGLCIALSFAFGIEAFKVPDTLAAALMQIGGGSA FALMVPVLAGYIAFSIADRPGLTPGLIGGMLAVSTGSGFIGGIIAGFLAGYMAKLIST KLKLPQSMEALKPILIIPLISSLVVGLAMIYLIGKPVAGILEGLTHWLQTMGTVNAVL LGAILGGMMCTDMGGPVNKAAYAFGVGLLSTQTYAPMAAIMAAGMVPPLALGLATMVA RRKFDKAQQEGGKAALVLGLCFITEGAIPFAARDPMRVLPCCIVGGALTGAISMAVGA KLMAPHGGLFVLLIPGAITPVLGYLLAIVAGTLVAGLAYAVLKRPETEVTAKAA" regulatory complement(2305276..2305281) /regulatory_class="ribosome_binding_site" /gene="fruA" /locus_tag="STM2204" /note="putative RBS for fruA; RegulonDB:STMS1H002347" gene complement(2305285..2306234) /gene="fruK" /locus_tag="STM2205" /db_xref="GeneID:1253727" CDS complement(2305285..2306223) /gene="fruK" /locus_tag="STM2205" /EC_number="2.7.1.56" /note="similar to E. coli fructose-1-phosphate kinase (AAC75229.1); Blastp hit to AAC75229.1 (312 aa), 98% identity in aa 1 - 312" /codon_start=1 /transl_table=11 /product="1-phosphofructokinase" /protein_id="NP_461150.1" /db_xref="GI:16765535" /db_xref="GeneID:1253727" /translation="MSRRVATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGIN VAKVLKDLGIDVTVGGFLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGE VTDFNFSGFDVTPADWERFVNDSLSWLGQFDMVCVSGSLPAGVSPEAFTDWMTRLRSQ CPCIIFDSSREALVAGLKAAPWLVKPNRRELEIWAGRKLPEMKDVIDAAHALREQGIA HVVISLGAEGALWVNASGEWIAKPPAVDVVSTVGAGDSMVGGLIYGLLMRESSEHTLR LATAVAALAVSQSNVGITDRPQLAAMMARVDLQPFN" gene complement(2306223..2307368) /gene="fruF" /locus_tag="STM2206" /db_xref="GeneID:1253728" CDS complement(2306223..2307353) /gene="fruF" /locus_tag="STM2206" /EC_number="2.7.1.191" /note="PTS system, fructose-specific IIA/FPRr component (EIIA-FRU) (fructose-permease IIA/HPR component) (phosphotransferase enzyme II, A/HPR component). (SW:PTFA_SALTY)" /codon_start=1 /transl_table=11 /product="bifunctional PTS fructose transporter subunit IIA/HPr protein" /protein_id="NP_461151.1" /db_xref="GI:16765536" /db_xref="GeneID:1253728" /translation="MFQLSVQDIHPGEQAGNKEEAIRQIAAALAQAGNVAGGYVDGML AREQQTSTFLGNGIAIPHGTTDTRDQVLKTGVQVFQFPQGVTWGEGQVAYVAIGIAAS SDEHLGLLRQLTHVLSDDSVAEQLKSATTAEELRALLMGEKQSEQLKLDNETMTLDVI ASSLVTLQALNAARLKEAGAVDAAFVAKTINDSPMNLGQGIWLNDSAEGNLRSAVAVS RATQAFDVEGEKAALLVTVAMNDEQPIAVLKRLGDLLLNNKADRLLSADAATLLALLT SDDALTDDVLSAEFVVRNEHGLHARPGTMLVNTIKQFNSEITVTNLDGTGKPANGRSL MKVVALGVKKGHRLRFTAQGEDAEQALKAIGDAIAAGLGEGA" regulatory complement(2306229..2306234) /regulatory_class="ribosome_binding_site" /gene="fruK" /locus_tag="STM2205" /note="putative RBS for fruK; RegulonDB:STMS1H002348" regulatory complement(2307363..2307368) /regulatory_class="ribosome_binding_site" /gene="fruF" /locus_tag="STM2206" /note="putative RBS for fruF; RegulonDB:STMS1H002349" gene 2307722..2308903 /gene="setB" /locus_tag="STM2207" /db_xref="GeneID:1253729" CDS 2307722..2308903 /gene="setB" /locus_tag="STM2207" /note="sugar efflux transporter B. (SW:SETB_SALTY)" /codon_start=1 /transl_table=11 /product="sugar efflux transporter SetB" /protein_id="NP_461152.1" /db_xref="GI:16765537" /db_xref="GeneID:1253729" /translation="MHNSPAAAAPKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTD EVHARPGMVGFFFTGSAVIGIIVSQFLAGRSDKKGDRKKLIVFCCVLGMLACVLFAWN RNYFILLFIGVFLSSFGSTANPQMFALAREHADRTGREAVMFSSILRAQVSLAWVIGP PLAYALAMGFSFTVMYLSAAVAFIVCGVMVWFFLPSMRKDAPLATGTLEAPRRNRRDT LLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFA KRLGKRLLMCIAVVAGLCFYVGMLLAHAPATLLGLQLLNAIYIGILGGIGMLYFQDLM PGQAGSATTLYTNTIRVGWIIAGSLAGIAAEIWNYHAVFWFALVMIVATMFCLARIKD V" gene complement(2308968..2309645) /locus_tag="STM2208" /db_xref="GeneID:1253730" CDS complement(2308968..2309633) /locus_tag="STM2208" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461153.1" /db_xref="GI:16765538" /db_xref="GeneID:1253730" /translation="MRGENSEIDLVDVSLFLIRKWLSIMIATFIFVAIGYVFVSVQHD TKVVSMTIKPNLDTPATYALCGYTNDIQCKTTVILNQFSRFLPAEYKNKISFDAKNQL VLFKAQGREESVNNIISTLKNSVDKMAAWYIDDGDIKRYSVHKNMLQTETYAKLSLLS EAVKNNANIEVIDVAVTPKYKMRLVLVLCGLMGVIFSITGLLCKRALTEYRIEKKTMN DRA" gene complement(2309635..2309757) /locus_tag="STM2209" /db_xref="GeneID:1253731" CDS complement(2309635..2309757) /locus_tag="STM2209" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461154.1" /db_xref="GI:16765539" /db_xref="GeneID:1253731" /translation="MCGFYLMKKYTFAARAFIFTLVLLFVISVFGLTISVLKGM" regulatory complement(2309640..2309645) /regulatory_class="ribosome_binding_site" /locus_tag="STM2209" /note="putative RBS for STM2208; RegulonDB:STMS1H002350" gene 2310185..2310588 /locus_tag="STM2210" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1253732" gene 2310492..2311295 /gene="yeiP" /locus_tag="STM2211" /db_xref="GeneID:1253733" CDS 2310492..2311295 /gene="yeiP" /locus_tag="STM2211" /note="similar to E. coli putative elongation factor (AAC75232.1); Blastp hit to AAC75232.1 (275 aa), 83% identity in aa 8 - 275" /codon_start=1 /transl_table=11 /product="putative elongation factor" /protein_id="NP_461155.3" /db_xref="GI:1109557680" /db_xref="GeneID:1253733" /translation="MPSDIPKTRLETEGTTQHTSPLRATCHRVFSLNAGRKAGEQYHL FCTSKSDNSTCLDGPARVVLRDILDNLYNRISSMPRANEIKKGMVLNYNGKLLIVKDI DIQSPTARGAATLYKMRFSDVRTGLKVEERFKGDDIVDTVTLSRRGVDFSYVDGNEYV FMDKEDYTPYTFTKDQIEEELLFMPEGGMPDMQVLTWDGQLLALELPQTVDLEIVETA PGIKGASASARNKPATLSTGLVIQVPEYLSAGEKIRIHIEERRYMGRAD" gene 2311497..2312494 /gene="yeiR" /locus_tag="STM2212" /db_xref="GeneID:1253734" regulatory 2311497..2311502 /regulatory_class="ribosome_binding_site" /gene="yeiR" /locus_tag="STM2212" /note="putative RBS for yeiR; RegulonDB:STMS1H002351" CDS 2311508..2312494 /gene="yeiR" /locus_tag="STM2212" /note="similar to E. coli orf, hypothetical protein (AAC75234.1); Blastp hit to AAC75234.1 (328 aa), 87% identity in aa 1 - 328" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461156.1" /db_xref="GI:16765541" /db_xref="GeneID:1253734" /translation="MTKTNLITGFLGSGKTTSILHLLAHKDPAEKWAVLVNEFGEVGI DGALLADSGALLKEIPGGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQIL DLLTAPVYEPWIDLRATLCILDPRLLLDQQSVANENFRDQLASADIIIANKTDRATAQ SDAALQQWWRQYGGDRQLIHAEHGQIDGKLLDLPRQNLAELPASAAHSHTHASKKGLA ALNLPAQQRWRRSLNSGQGHQACGWIFDADTVFDTIGLLEWARLAPVGRVKGVMRIQE GLVRINRQGDDLHIETQSVAPPDSRVELISNTETDWNTLQTALLKLRLATHA" gene 2312516..2313243 /gene="yeiU" /locus_tag="STM2213" /db_xref="GeneID:1253735" regulatory 2312516..2312521 /regulatory_class="ribosome_binding_site" /gene="yeiU" /locus_tag="STM2213" /note="putative RBS for yeiU; RegulonDB:STMS1H002352" CDS 2312524..2313243 /gene="yeiU" /locus_tag="STM2213" /note="similar to E. coli orf, hypothetical protein (AAC75235.1); Blastp hit to AAC75235.1 (249 aa), 83% identity in aa 20 - 249" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461157.1" /db_xref="GI:16765542" /db_xref="GeneID:1253735" /translation="MTMKTRYSLIILLNAAGLALFLSWYLPVNHGFWFTIDSGIFHFF NQKLVESHAFLWWVAITNNRAFDGCSLLAMGGLMLSFWLKENASGRRRIVIIGLVMLL TAVVLNQLGQALIPVKRASPTLSFEHIYRVSELLHIPTKDASKDSFPGDHGMMLLIFS AFMLRYFGKTAGIIALIIFVVFAFPRVMIGAHWFTDIVVGSLTVILIGLPWWLMTPLS DRAIALFENYLPGGNKQILNK" gene 2313640..2314229 /gene="spr" /locus_tag="STM2214" /db_xref="GeneID:1253736" regulatory 2313640..2313645 /regulatory_class="ribosome_binding_site" /gene="spr" /locus_tag="STM2214" /note="putative RBS for spr; RegulonDB:STMS1H002353" CDS 2313657..2314229 /gene="spr" /locus_tag="STM2214" /note="suppresses thermosensitivity of prc mutants at low osmolality; similar to E. coli putative lipoprotein (AAC75236.1); Blastp hit to AAC75236.1 (188 aa), 92% identity in aa 1 - 188" /codon_start=1 /transl_table=11 /product="bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase" /protein_id="NP_461158.1" /db_xref="GI:16765543" /db_xref="GeneID:1253736" /translation="MVKSQPILRYILRGIPAIAVAVLLSACSTTTNTAKNMHSETHAV GNSDSSSLQASQDEFENMVRNLDVKSRIMDQYADWKGVRYRLGGSTKKGVDCSSFVQR TFREQFGLELPRSTYEQQEMGKAVSRNNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHA STSSGVIISSMNEPYWKKRYNEARRVLSRS" gene 2314547..2316111 /gene="rtn" /locus_tag="STM2215" /db_xref="GeneID:1253737" regulatory 2314547..2314552 /regulatory_class="ribosome_binding_site" /gene="rtn" /locus_tag="STM2215" /note="putative RBS for rtn; RegulonDB:STMS1H002354" CDS 2314555..2316111 /gene="rtn" /locus_tag="STM2215" /note="similar to E. coli orf, hypothetical protein (AAC75237.1); Blastp hit to AAC75237.1 (518 aa), 70% identity in aa 1 - 518" /codon_start=1 /transl_table=11 /product="phage resistance protein" /protein_id="NP_461159.1" /db_xref="GI:16765544" /db_xref="GeneID:1253737" /translation="MLTRDSSSGRKILLTCIITGIAAALLIGSLQFFLSWHKRDVKYN TLLSDVQHYLASYFADLKATTDILQPLTINTCQQVGAELTSRAAFSLNVRAFLLIKDK KVFCSSATGAMNMPLQQLVPDIDIRKDVAMAILPGTPMMPNKPTMVIWYRNPLLNDSG VFTSLNINLTPYLLYTTRQDDFNGIALIVGNTALSTFSSRLLTVAELPGTPSRLATIN GLPLKIRLYADSWTYNDLWYALMLGCISGIVAGFICYFIYALRTRPGKEILTAIKHEQ FYVVYQPVVDTRTLSVTGLEVLLRWRHPTAGEIPPDAFIHYAEAQQLIVPLTQHLFEL IARDAPTLQKVMPVGAKFGINIAPEHLHSDSFKEDMHRLRDALPAHHFHIVLEITERD MLQQYEAAKLFEWLHSAGFEIAIDDFGTGHSALIYLERFTLDYLKIDRGFIQAIGTET VTSPVLDTVLTLSRRLNMLTVAEGVETPEQARWLRDHGVNYLQGYWISRPLPLKDFVL WMSAPSVPEW" gene 2316201..2318023 /gene="yejA" /locus_tag="STM2216" /db_xref="GeneID:1253738" regulatory 2316201..2316206 /regulatory_class="ribosome_binding_site" /gene="yejA" /locus_tag="STM2216" /note="putative RBS for yejA; RegulonDB:STMS1H002355" CDS 2316218..2318023 /gene="yejA" /locus_tag="STM2216" /note="similar to E. coli orf, hypothetical protein (AAC75238.1); Blastp hit to AAC75238.1 (606 aa), 86% identity in aa 3 - 603" /codon_start=1 /transl_table=11 /product="ABC transporter substrate-binding protein" /protein_id="NP_461160.1" /db_xref="GI:16765545" /db_xref="GeneID:1253738" /translation="MIARVMLLLVALVSAGAQAQEIKESYAFAVLGEPKYAFNFEHFD YVNPAAPKGGQMTLSAIGTFDNFNRYSLRGNPGVRTEALYDTLFTTSDDEPGSYYPLI ADHARYAADYSWVEISINPRARFHDGTPITARDVAFTFHKFMTEGVPQFRLVYKGTTV KAIAPLTVRIELAKPGKEDMLSLFSLPIMPEKFWKNHKLSDPLSTPPLASGPYRITQW KMGQYIVYSRVKNYWAANLPVNRGRFNLDTIRYDYYLDDNVAFEAFKAGAFDLRLEND AKNWATRYIGKNFDNHYIIKEEQKNESAQDTRWLAFNIQRPVFKDRRVREAVTLAFDF EWMNKALFYNAWSRTNSYFQNTEYAARNYPDADELVLLAPMKKDLPPEVFTQIYQPPV SNGDGYDRENLLKADALLTQAGWVINGQQRVNSVTGKPLTFELLLPASSNSQWVLPFQ HNLQRLGITMTIRQVDNSQLTNRMRSRDYDMMPRLWRAMPWPSSDLQISWASEYIDSS YNAPGVQSPVVDKLIAQIIAAQGDKAKLVPLGRALDRVLTWNYYMLPMWYMAQDRLAR WDKFSHPAIRPVYTIGLDTWWYDVNKAAKLPAARR" gene 2318014..2319127 /gene="yejB" /locus_tag="STM2217" /db_xref="GeneID:1253739" regulatory 2318014..2318019 /regulatory_class="ribosome_binding_site" /gene="yejB" /locus_tag="STM2217" /note="putative RBS for yejB; RegulonDB:STMS1H002356" CDS 2318033..2319127 /gene="yejB" /locus_tag="STM2217" /note="similar to E. coli putative transport system permease protein (AAC75239.1); Blastp hit to AAC75239.1 (364 aa), 96% identity in aa 1 - 364" /codon_start=1 /transl_table=11 /product="microcin C ABC transporter permease YejB" /protein_id="NP_461161.1" /db_xref="GI:16765546" /db_xref="GeneID:1253739" /translation="MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEF GQGGALPGASGEGVRASHAQTGVGNISDSHYRGGRGLDPEVIAEITHRYGFDKPLHER YFKMLRDYLSFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV HNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYYDIFPLRGLVSANFDTLPWY QKITDYLWHITLPVLATVIGGFAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWK HVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTL YIFTLIGLLLNILSDISYTLVDPRIDFEGR" gene 2319116..2320152 /gene="yejE" /locus_tag="STM2218" /db_xref="GeneID:1253740" regulatory 2319116..2319121 /regulatory_class="ribosome_binding_site" /gene="yejE" /locus_tag="STM2218" /note="putative RBS for yejE; RegulonDB:STMS1H002357" CDS 2319127..2320152 /gene="yejE" /locus_tag="STM2218" /note="similar to E. coli putative transport system permease protein (AAC75240.1); Blastp hit to AAC75240.1 (341 aa), 91% identity in aa 1 - 341" /codon_start=1 /transl_table=11 /product="microcin ABC transporter permease" /protein_id="NP_461162.1" /db_xref="GI:16765547" /db_xref="GeneID:1253740" /translation="MPRLSPVNQARWARFRHNRRGYWSLWIFLVVFSLSLCAELIAND KPLLVRYEGQWYFPLVKNYSERDFGGPLATTADYQDPWLQRQLENRGWVLWAPVRFSA NTINFATTQPFPSPPSAKNWLGTDANGGDVFARILYGTRISILFGLMLTICSSVMGVL AGALQGYYGGKVDLWGQRLIEVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSL VGVVRAEFLRTRNFDYIRAAQALGVSDRDIILRHMLPNAMVATLTFLPFILCSSITTL TSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLGIAAFLSVAILLSLLIFIGEAVRDA FDPAKAV" gene 2320141..2321743 /gene="yejF" /locus_tag="STM2219" /db_xref="GeneID:1253741" regulatory 2320141..2320146 /regulatory_class="ribosome_binding_site" /gene="yejE" /locus_tag="STM2218" /note="putative RBS for yejF; RegulonDB:STMS1H002358" CDS 2320154..2321743 /gene="yejF" /locus_tag="STM2219" /note="contains duplicated ATPase domain; similar to E. coli putative ATP-binding component of a transport system (AAC75241.1); Blastp hit to AAC75241.1 (529 aa), 86% identity in aa 1 - 529" /codon_start=1 /transl_table=11 /product="microcin C ABC transporter ATP-binding protein YejF" /protein_id="NP_461163.1" /db_xref="GI:16765548" /db_xref="GeneID:1253741" /translation="MTSPLLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGES GSGKSVTALSILRLLPTPPAVYLSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM VSLNPLHTLEKQLYEVLSLHRGMSREAARAEMIGCLDRVGIRQASQRLRDYPHQLSGG ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLS IVKKLADSVAVMQHGKCVENQRADTLLSAPTHPYTQKLLNSEPTGDPVPLPAGQAPLL EVDKLRVAFPIRKGILKRVVDHNVVVNNISFTLHPGETLGLVGESGSGKSTTGLALLR LIRSEGRIVFDGQSLDTLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH QPTLSGAQREQQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILD EPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQG QCERVFTAPQQAYTRQLLALS" gene complement(2321747..2322104) /gene="yejG" /locus_tag="STM2220" /db_xref="GeneID:1253742" CDS complement(2321747..2322091) /gene="yejG" /locus_tag="STM2220" /note="similar to E. coli orf, hypothetical protein (AAC75242.1); Blastp hit to AAC75242.1 (114 aa), 90% identity in aa 1 - 114" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461164.1" /db_xref="GI:16765549" /db_xref="GeneID:1253742" /translation="MNTLQLSIVHRLPQNYRWSAGFAGSKVEPIPQNGQSTENSLVAL KLLSPAGDSAWSVMHKLSQALSDIEVPCSVLECEGEPCLFVNRQDEFAATCRLKNFGV AIAEPFSNNNPF" regulatory complement(2322099..2322104) /regulatory_class="ribosome_binding_site" /gene="yejG" /locus_tag="STM2220" /note="putative RBS for yejG; RegulonDB:STMS1H002359" gene complement(2322482..2323684) /gene="bcr" /locus_tag="STM2221" /db_xref="GeneID:1253743" CDS complement(2322482..2323672) /gene="bcr" /locus_tag="STM2221" /note="MFS family multidrug transport protein; similar to E. coli bicyclomycin resistance protein; transmembrane protein (AAC75243.1); Blastp hit to AAC75243.1 (396 aa), 93% identity in aa 1 - 396" /codon_start=1 /transl_table=11 /product="Bcr/CflA family drug resistance efflux transporter" /protein_id="NP_461165.1" /db_xref="GI:16765550" /db_xref="GeneID:1253743" /translation="MTTRQHSSFAIVFILGLLAMLMPLSIDMYLPALPVISAQFGVPA GSAQMTLSTYILGFALGQLIYGPMADSLGRKPVILGGTLVFAAAAVACALAQTIDQLI VMRFFHGLAAAAASVVINALMRDIYPKEEFSRMMSFVMLVTTIAPLMAPIVGGWVLVW LSWHYIFWILAIAAILASVMIFALIKETLPVERRQPFHIRTTIGNFAALFRHKRVLSY MLASGFSFAGMFSFLSAGPFVYIEINHVPPQDFGYYFALNIVFLFVMTIINSRFVRRV GALNMFRAGLWIQFAMAVWMVFSALMGIGFWALVVGVAAFVGCVSMVSSNAMAVILDE FPHMAGTASSLAGTFRFGIGAIVGALLSLATFNSAWPMIWSIALCAACSILFYLYASR PKKR" regulatory complement(2323679..2323684) /regulatory_class="ribosome_binding_site" /gene="bcr" /locus_tag="STM2221" /note="putative RBS for bcr; RegulonDB:STMS1H002360" gene complement(2323700..2324412) /gene="rsuA" /locus_tag="STM2222" /db_xref="GeneID:1253744" CDS complement(2323700..2324395) /gene="rsuA" /locus_tag="STM2222" /EC_number="4.2.1.70" /note="similar to E. coli 16S pseudouridylate 516 synthase (AAC75244.1); Blastp hit to AAC75244.1 (231 aa), 94% identity in aa 1 - 230" /codon_start=1 /transl_table=11 /product="16S rRNA pseudouridine(516) synthase" /protein_id="NP_461166.1" /db_xref="GI:16765551" /db_xref="GeneID:1253744" /translation="MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGDIIKNAAFKLLPE HAVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAYKLHAAGRLD IDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAAQFAKGVQLHNEKDL TKPATLEVITPVQVRLTISEGRYHQVKRMFAAVGNRVVELHRERIGAITLDENLAPGE YRPLTEEEIASVG" regulatory complement(2324407..2324412) /regulatory_class="ribosome_binding_site" /gene="rsuA" /locus_tag="STM2222" /note="putative RBS for rsuA; RegulonDB:STMS1H002361" gene 2324547..2326307 /gene="yejH" /locus_tag="STM2223" /db_xref="GeneID:1253745" CDS 2324547..2326307 /gene="yejH" /locus_tag="STM2223" /note="similar to E. coli putative ATP-dependent helicase (AAC75245.1); Blastp hit to AAC75245.1 (586 aa), 95% identity in aa 1 - 586" /codon_start=1 /transl_table=11 /product="putative ATP-dependent helicase" /protein_id="NP_461167.1" /db_xref="GI:16765552" /db_xref="GeneID:1253745" /translation="MIFTLRPYQQEAVDATLSHFRRHRTPAVIVLPTGAGKSLVIAEL ARVARGRVLVLAHVKELVAQNHAKYCALGLEADIFAAGLKRKESQGKVVFGSVQSVAR NLDAFQEEFSLLIVDECHRIGDDEDSQYQQILTHLSKVNPHLRLLGLTATPFRLGKGW IYQFHYHGMVRGNDNALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS NGLFSEADLNRELKKQQRITPHIISQIMEFAQTRKGVMIFAATVEHAKEIVGLLPADD AALITGDTPGPERDALIDNFKAQRFRYLVNVSVLTTGFDAPHVDLIAILRPTESVSLY QQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGSPKGKSDNVPVQVFCPACGFANT FWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE CDAILVDPDDMLKAALRLKDALVLRCSGMTMQHGQDEKGEWLKITYYDEDGADVSERF RLHTPAQRTAFEQLFIRPHTRTPGVPLRWITAADIVAQQALLRHPDFVVARMKGQYWQ VREKVFDYEGRFRRAHELRG" gene 2326421..2326716 /gene="rplY" /locus_tag="STM2224" /db_xref="GeneID:1253746" regulatory 2326421..2326426 /regulatory_class="ribosome_binding_site" /gene="rplY" /locus_tag="STM2224" /note="putative RBS for rplY; RegulonDB:STMS1H002362" CDS 2326432..2326716 /gene="rplY" /locus_tag="STM2224" /note="similar to E. coli 50S ribosomal subunit protein L25 (AAC75246.1); Blastp hit to AAC75246.1 (94 aa), 91% identity in aa 1 - 94" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L25" /protein_id="NP_461168.1" /db_xref="GI:16765553" /db_xref="GeneID:1253746" /translation="MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDH DQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA" gene complement(2326825..2327451) /locus_tag="STM2225" /db_xref="GeneID:1253747" CDS complement(2326825..2327445) /locus_tag="STM2225" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461169.1" /db_xref="GI:16765554" /db_xref="GeneID:1253747" /translation="MSKGIRQRPPVNFSLFRQVLYAHIVAFLMMLMLGMVFTVLSLVL FYTYGTNWLLSLFICPLFLLSGLFITGFAFKSTWSSIRYYYDKGQLKRYGLNLDATLT HKEKVEIRIDNAKRQVRVDELELHVLFDFQFDSKTWSCGDLLTNEKVFDALNDGQTIP IRILPWKPESASVRQRALFNRLKGMNTAAETTDPRLGEALIECGEV" regulatory complement(2327446..2327451) /regulatory_class="ribosome_binding_site" /locus_tag="STM2225" /note="putative RBS for STM2225; RegulonDB:STMS1H002363" gene complement(2327473..2328494) /gene="yejK" /locus_tag="STM2226" /db_xref="GeneID:1253748" CDS complement(2327473..2328480) /gene="yejK" /locus_tag="STM2226" /note="present in spermidine nucleoids; similar to E. coli orf, hypothetical protein (AAC75247.1); Blastp hit to AAC75247.1 (335 aa), 96% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="nucleoid-associated protein YejK" /protein_id="NP_461170.1" /db_xref="GI:16765555" /db_xref="GeneID:1253748" /translation="MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTTTVVEMVAELH RVYSAKNKAYGLFNEESELAQALRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGI VLFCHYRYLAVEYLLVTVLNNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETN PQSTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAE RQNVRQQVYSYCNEQLQAGEEIELESLSKELSGVSEVSFSEFTAEKGYELEESFPADR STLRQLTKYAGSGGGLTINFDAMLLGERIFWDPATDTLTIKGTPPNLRDQLQRRTSGG K" regulatory complement(2328489..2328494) /regulatory_class="ribosome_binding_site" /gene="yejK" /locus_tag="STM2226" /note="putative RBS for yejK; RegulonDB:STMS1H002364" gene 2328647..2328887 /gene="yejL" /locus_tag="STM2227" /db_xref="GeneID:1253749" regulatory 2328647..2328652 /regulatory_class="ribosome_binding_site" /gene="yejL" /locus_tag="STM2227" /note="putative RBS for yejL; RegulonDB:STMS1H002365" CDS 2328660..2328887 /gene="yejL" /locus_tag="STM2227" /note="similar to E. coli orf, hypothetical protein (AAC75248.1); Blastp hit to AAC75248.1 (75 aa), 90% identity in aa 1 - 75" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461171.1" /db_xref="GI:16765556" /db_xref="GeneID:1253749" /translation="MPQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNL INTSVAPAQRQAIANSFARALQSSISEDNAH" gene 2328901..2330679 /gene="yejM" /locus_tag="STM2228" /db_xref="GeneID:1253750" regulatory 2328901..2328906 /regulatory_class="ribosome_binding_site" /gene="yejM" /locus_tag="STM2228" /note="putative RBS for yejM; RegulonDB:STMS1H002366" CDS 2328919..2330679 /gene="yejM" /locus_tag="STM2228" /note="hypothetical protein in rplY-proL intergenic region. (SW:YEJM_SALTY)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461172.1" /db_xref="GI:16765557" /db_xref="GeneID:1253750" /translation="MVTHRQRYREKVSQMVSWGHWFALFNILLATLLGSRYLFVADWP TTLAGRIYSYLSIVGHFSFLVFATYLLILFPLTFIVMSQRLMRFLSAILATAGMTLLL IDSEVFTRFHLHLNPIVWELVINPDQNEMARDWQLMFISVPVILLIEMLFATWSWQKL RSLTRRRHFARPLAAFFFVSFIASHLIYIWADANFYRPITMQRANLPLSYPMTARRFL EKHGLLDAQEYQRRLVEQGNPEAVSVQYPLSNLHYRDMGTGQNVLLITVDGLNYSRFE KQMPELATFAEQNIDFTRHMSSGNTTDNGIFGLFYGISPGYMDGVLSTRTPAALITAL NQQGYQLGLFSSDGFASPLYRQALLSDFSMPAAQTQSDAQTASQWIDWLGRYAQEDNR WFSWISFNGTNIDDSNQKNFVKRYASAASDVDAQINRVLNALREAGKFDNTVVIITAG RGIPLTPEENRFDWSQGHLQVPLVIHWPGTPAQRINVLTDHTDVMTTLMQRLLHVSTP ANEYSQGQDIFTVPRRHNWVTAADGSTLAITTPQMTLVLNNNGHYQTYDLHGEKIKDQ KPQLSLLLQVLTEEKRFIAN" gene 2330748..2330821 /locus_tag="STM2229" /db_xref="GeneID:1253751" tRNA 2330748..2330821 /locus_tag="STM2229" /product="tRNA-Pro" /db_xref="GeneID:1253751" gene complement(2330960..2331469) /locus_tag="STM2230" /db_xref="GeneID:1253752" CDS complement(2330960..2331463) /locus_tag="STM2230" /EC_number="3.4.21.-" /note="similar to E. coli SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC (AAC74267.1); Blastp hit to AAC74267.1 (139 aa), 38% identity in aa 22 - 139" /codon_start=1 /transl_table=11 /product="putative peptidase" /protein_id="NP_461173.3" /db_xref="GI:1109557681" /db_xref="GeneID:1253752" /translation="MKQANEWIEWYVTTFRDVSTQEGETYLSAVQSKRRTIAMGFPSP ASDYVETRISLDQQLISQPAATYFMRASRSHFREGIIQGALLVVDASLSACDGSLLIC AIDGEFRIKRYRTHPQPHLINLENGRKEALPEDGDGYNSSHAIFGVITYIINDARNAE FDDCPVM" regulatory complement(2331464..2331469) /regulatory_class="ribosome_binding_site" /locus_tag="STM2230" /note="putative RBS for STM2230; RegulonDB:STMS1H002368" gene 2331491..2331781 /locus_tag="STM2231" /db_xref="GeneID:1253753" CDS 2331491..2331781 /locus_tag="STM2231" /note="similar to msgA; virulence protein msga (SW:MSGA_SALTY)" /codon_start=1 /transl_table=11 /product="ssrB-regulated factor" /protein_id="NP_461174.1" /db_xref="GI:16765559" /db_xref="GeneID:1253753" /translation="MLDKPLCGDGLPAIRFLLYRSIPGYFNIDGLPGAKDIILGELTK RVHRIFPDADVRVKPMMTLPAINTDASKHEKEQISRTVQEMFEEAEFWLVSE" gene 2332124..2333958 /gene="oafA" /locus_tag="STM2232" /db_xref="GeneID:1253754" regulatory 2332124..2332129 /regulatory_class="ribosome_binding_site" /gene="oafA" /locus_tag="STM2232" /note="putative RBS for oafA; RegulonDB:STMS1H002369" CDS 2332129..2333958 /gene="oafA" /locus_tag="STM2232" /note="O-antigen five:" /codon_start=1 /transl_table=11 /product="acyltransferase" /protein_id="NP_461175.1" /db_xref="GI:16765560" /db_xref="GeneID:1253754" /translation="MIYKKFRLDINGLRAFALISVVLYHFGVPYVSGGFIGVDVFFVI SGFLMTGIVLERVDHKGVLDFYIARFLRIVPALVFAILLLMIFGLFTLSTNEYEALSK NAISSLLFYSNNYYAIHSSYFDSSSEFNFLLHTWSLSVEWQFYILYPLLVIIVKKLRF PVGLSLSVILAMSLAITLMRVTGTKEDIFYLIPTRAWEMLAGGLVYIASVRYKMPEWI KHCEVYGIVLIVVAVVILHSNGYWPSYSALAPVLGASMVILANKQNSLFTSNRIAQWV GKISYSVYLWHWPVIVAMKHYDIEFSAINIFFGVIVSFALGDISYRTIENTLRKRVKL QFNIVLFSSTLALCLFVMFTKGVSFRFSDTLKQVVEYRMDNSPWRPDICFLNPDQDYS AFSKCQDKMTEKSFVVWGDSHAAHLMPGLKSVFGNSLNITQRTASLCPPIIGLQKDDR PYCKDINDMVAKEISDNKPTTVLMSALWPVYPMRDYLPETIKFLKDNKVKNIIIVGPF PVWKKTMIDTIEDMGINSGRTVPWSMTDETRNLRDNDKYLRELAKEHSLTYISPLETM CTESYCKAIIGNRIAYPIQYDNAHLTPEGSGWFIEEVKKQISK" gene complement(2334012..2334468) /locus_tag="STM2233" /db_xref="GeneID:1253755" CDS complement(2334012..2334455) /locus_tag="STM2233" /note="similar to E. coli orf, hypothetical protein (AAC75413.1); Blastp hit to AAC75413.1 (146 aa), 46% identity in aa 5 - 146" /codon_start=1 /transl_table=11 /product="phage tail protein" /protein_id="NP_461176.1" /db_xref="GI:16765561" /db_xref="GeneID:1253755" /translation="MSIICFSSTSNTYFSEENIPAYKASGLWSNDFYALTDEEVDKYY MKTPPKGMYLGSSNGRIAWVCIPPPTQDDLISAANQEKKKRIDQANEHMNSRRWPGKA ALGRLTGDELAQYNLWLDYLDALKAVDTSVAQNIACPIRKAIHIK" regulatory complement(2334463..2334468) /regulatory_class="ribosome_binding_site" /locus_tag="STM2233" /note="putative RBS for STM2233; RegulonDB:STMS1H002370" gene complement(2334833..2335365) /locus_tag="STM2234" /db_xref="GeneID:1253756" CDS complement(2334833..2335360) /locus_tag="STM2234" /codon_start=1 /transl_table=11 /product="phage tail protein" /protein_id="NP_461177.1" /db_xref="GI:16765562" /db_xref="GeneID:1253756" /translation="MRHFKNFTKTTELTLVQQKLSENCSIQFIQDESGVDWYVLQKLF QPDTLKIQYDKTGLIIAADKDATKLFPLNCSVVEFADTDIPDGFQPGNFTYSNGVIAP VQIDYVALATAERDRRMTSVTAKINQLVEAQDDGDITAAELSELTALREYRTKLRRLA LDVAPDINWPEYLNK" regulatory complement(2335360..2335365) /regulatory_class="ribosome_binding_site" /locus_tag="STM2234" /note="putative RBS for STM2234; RegulonDB:STMS1H002371" gene complement(2335363..2336616) /locus_tag="STM2235" /db_xref="GeneID:1253757" CDS complement(2335363..2336604) /locus_tag="STM2235" /note="similar to E. coli orf, hypothetical protein (AAC74238.1); Blastp hit to AAC74238.1 (209 aa), 62% identity in aa 1 - 74" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461178.1" /db_xref="GI:16765563" /db_xref="GeneID:1253757" /translation="MHRIDTPTAQKDKFGQGKNGFTNGDPATGRRATDLNSDMWDAVQ EEVCTVIEAAGIPLSKGEHTQLHAAIGRLIYEQVKTRLEKNQNGADIPNKPLFLQNVG LVDVLFKGDGRFLAGTFVSDAIDRTSIGARAATGCQFMRAHQAPDAPDQVSFWQIITL SEVVSPTTVVDVLAVSGNNVLFGHGTGTGITSWRQVAMLEGGAFTGGISAPNMRGDTL VTVGDGTGGMAKGDVDGAGFNGNNLNIKSWNGIGFQNSEDLAIRAYISTRLGVIAAAE NLQAGSAIFNKNGDVYGDIWGGGSGPGWLSAFVASKPARQYITMVGVYQNDKTKPFML HDDGSGVFLATTDMLSGYVQSIRFGAVEHGNLYRSPGFADQLGYVITGVENGDSNDTP DRIQRRLLQLKVNGQWYTVGA" regulatory complement(2336611..2336616) /regulatory_class="ribosome_binding_site" /locus_tag="STM2235" /note="putative RBS for STM2235; RegulonDB:STMS1H002372" gene complement(2336665..2337190) /locus_tag="STM2236" /db_xref="GeneID:1253758" CDS complement(2336665..2337183) /locus_tag="STM2236" /codon_start=1 /transl_table=11 /product="peptidase" /protein_id="NP_461179.1" /db_xref="GI:16765564" /db_xref="GeneID:1253758" /translation="MSEREIRCYSGEVRAETHDSEPSRIIGYGSVFDSRSELIFGSFR EIIRPGAFDEVLNDDVRALFNHDPNFILGRRSAGTLALTVDERGLRYDITAPETQTIR DLVLAPMQRGDINQSSFAFRVARDGEEWYQDEDGVVIREITRFSRLLDGRPVQAPAIL RSERGAILLLNV" regulatory complement(2337185..2337190) /regulatory_class="ribosome_binding_site" /locus_tag="STM2236" /note="putative RBS for STM2236; RegulonDB:STMS1H002373" gene complement(2337197..2337533) /locus_tag="STM2237" /db_xref="GeneID:1253759" CDS complement(2337197..2337526) /locus_tag="STM2237" /codon_start=1 /transl_table=11 /product="lambda family phage holin" /protein_id="NP_461180.1" /db_xref="GI:16765565" /db_xref="GeneID:1253759" /translation="MPHNPNTWPDLLELLQSWWRGDTPLGAVIMSIVMAGLRIAYFGS GGGWKRKMLEILLCGALTLTFASALEYVGWMSRNEARAFEDMNPKDGLDEMLVSVNAS RPAKTTI" regulatory complement(2337528..2337533) /regulatory_class="ribosome_binding_site" /locus_tag="STM2237" /note="putative RBS for STM2237; RegulonDB:STMS1H002374" gene 2337817..2339154 /locus_tag="STM2238" /db_xref="GeneID:1253760" regulatory 2337817..2337822 /regulatory_class="ribosome_binding_site" /locus_tag="STM2238" /note="putative RBS for STM2238; RegulonDB:STMS1H002375" CDS 2337823..2339154 /locus_tag="STM2238" /codon_start=1 /transl_table=11 /product="NTPase" /protein_id="NP_461181.1" /db_xref="GI:16765566" /db_xref="GeneID:1253760" /translation="MLETLSFTERDEFQRRNIAENIIKLLKPEADISPLVIDGAWGTG KSEFSIKLKNLIIEQETESKVVYVDAFKGDHAESPLLLITSAIASILPEEEKQNFIKR SLPAIRFGLKTVLKAGAGWFLRQEASEVAEEFQDAMKKASNAAIDGTIENILEDHMES EKNINSLKSCIEDISNKQKIVIIIDELDRCKPSFSTNIIETIKHIFDINNVFFILVTN TEQLKASINHIYGYSINSQKYLDKFIKYTITLPDTCLINGHNVCKTSVIYWDHLVGET TLLNKINSLVGSFICDLIQRTNLSLRETQTFSRNLNIFRLLNDNECKSNDPFINMIVV VAVFIHCFGDKEKLKQEITAESISYLADLLNIKEIPYSYERRSQIPEISIIFFGIIKD SITLNERFAPKSDEELKKFTNVYTDYEHLKFWSTTPRELMIKYINQMSFIQ" gene complement(2339183..2339561) /locus_tag="STM2239" /db_xref="GeneID:1253761" CDS complement(2339183..2339551) /locus_tag="STM2239" /note="similar to antiterminator protein Q of phage P5; similar to E. coli orf, hypothetical protein (AAC73652.1); Blastp hit to AAC73652.1 (127 aa), 47% identity in aa 1 - 121" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461182.1" /db_xref="GI:16765567" /db_xref="GeneID:1253761" /translation="MMRDIQMVLERWGAWAASDSSGVDYSPIAAGFKGLLPYTCKTRV ACSDNDALIVEGCLARLKQKRPDEHSLLVAHYLYRISKRKIAKVRGKDEKLVRIEIQL AEGFIDGCLSMLDLTLDMDV" regulatory complement(2339556..2339561) /regulatory_class="ribosome_binding_site" /locus_tag="STM2239" /note="putative RBS for STM2239; RegulonDB:STMS1H002376" gene complement(2339566..2340564) /locus_tag="STM2240" /db_xref="GeneID:1253762" CDS complement(2339566..2340555) /locus_tag="STM2240" /note="similar to E. coli orf, hypothetical protein (AAC74633.1); Blastp hit to AAC74633.1 (362 aa), 84% identity in aa 251 - 362, 43% identity in aa 14 - 238" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461183.1" /db_xref="GI:16765568" /db_xref="GeneID:1253762" /translation="MRALLTPEIAPRMGVVLFRPGSELMPLFMQGRVLLEPEPEQFSS FASGAVPAVSQPLADDPAVRDVFCNESVIYRAGGLDSLESWLLRGNGCQWPHSDWHSE QMTTMRHAPGAIRLCWHCDNLLREQFTERLKSIAVENTTKWVLSVVCRDLGFDDMHAV TLPELCWWMVRNNLAEVLPESAARKALRMPKAIVQSATRESEIVPSVLATSIVQDKAK KVLALRVDPESPESFMLRPKRRRWVNERYTRWVKSQPCTCCGKQADDPHHLIGYGQGG MGTKAHDLFVLPLCRTHHNELHADTVAFEEKYGSQLELIFRFIDRALAIGVLA" regulatory complement(2340559..2340564) /regulatory_class="ribosome_binding_site" /locus_tag="STM2240" /note="putative RBS for STM2240; RegulonDB:STMS1H002377" gene complement(2340884..2343255) /gene="sspH2" /locus_tag="STM2241" /db_xref="GeneID:1253763" CDS complement(2340884..2343250) /gene="sspH2" /locus_tag="STM2241" /note="induced by the SPI-2 regulator ssrA/B" /codon_start=1 /transl_table=11 /product="E3 ubiquitin--protein ligase" /protein_id="NP_461184.1" /db_xref="GI:16765569" /db_xref="GeneID:1253763" /translation="MPFHIGSGCLPATISNRRIYRIAWSDTPPEMSSWEKMKEFFCST HQTEALECIWTICHPPAGTTREDVINRFELLRTLAYAGWEESIHSGQHGENYFCILDE DSQEILSVTLDDAGNYTVNCQGYSETHRLTLDTAQGEEGTGHAEGASGTFRTSFLPAT TAPQTPAEYDAVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPD CLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQL TSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN RLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTV NLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPARE GEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALR ANTFAMATEATSSCEDRVTFFLHQMKNVQLVHNAEKGQYDNDLAALVATGREMFRLGK LEQIAREKVRTLALVDEIEVWLAYQNKLKKSLGLTSVTSEMRFFDVSGVTVTDLQDAE LQVKAAEKSEFREWILQWGPLHRVLERKAPERVNALREKQISDYEETYRMLSDTELRP SGLVGNTDAERTIGARAMESAKKTFLDGLRPLVEEMLGSYLNVQWRRN" regulatory complement(2343250..2343255) /regulatory_class="ribosome_binding_site" /gene="sspH2" /locus_tag="STM2241" /note="putative RBS for sspH2; RegulonDB:STMS1H002378" gene complement(2343419..2343626) /locus_tag="STM2242" /db_xref="GeneID:1253764" CDS complement(2343419..2343622) /locus_tag="STM2242" /codon_start=1 /transl_table=11 /product="putative tail fiber protein of phage" /protein_id="NP_461185.1" /db_xref="GI:16765570" /db_xref="GeneID:1253764" /translation="MPDTDENRRADIHAAGSLKTVKSFKGFIRRKSCAGRQNRKLNAR ALIPDDLVIVESDPEKIDTLAVK" regulatory complement(2343621..2343626) /regulatory_class="ribosome_binding_site" /locus_tag="STM2242" /note="putative RBS for STM2242; RegulonDB:STMS1H002379" gene complement(2343919..2344717) /locus_tag="STM2243" /db_xref="GeneID:1253765" CDS complement(2343919..2344710) /locus_tag="STM2243" /note="similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 60% identity in aa 458 - 505, 24% identity in aa 369 - 530" /codon_start=1 /transl_table=11 /product="phage tail protein" /protein_id="NP_461186.1" /db_xref="GI:16765571" /db_xref="GeneID:1253765" /translation="MISLEDASLTKKGIVKLSSATDSDSEALAATPKAVKTVMGEVRT KAPLDSPAFTGTPTTPTPPGDAKGLQTTNAEFVRKLIAALVGSVLEPLDTLQELADAL GNDPNFATTVLNKLAGKQPLDETLTALSGKSVDGLIEYVGLRETISRAADALQKSQNG GDIPDKDLFVRRIGAARAFDGAVIIGCDDNPWTTAEFIVWLESQGAFNHPYWMCRGSW SYAYNKIITDTGCGNICLAGAVIEVMGVRGAMTIRVTTSHSVSGW" regulatory complement(2344712..2344717) /regulatory_class="ribosome_binding_site" /locus_tag="STM2243" /note="putative RBS for STM2243; RegulonDB:STMS1H002380" gene 2345007..2345216 /locus_tag="STM2244" /db_xref="GeneID:1253766" regulatory 2345007..2345012 /regulatory_class="ribosome_binding_site" /locus_tag="STM2244" /note="putative RBS for STM2244; RegulonDB:STMS1H002381" CDS 2345013..2345216 /locus_tag="STM2244" /note="virulence protein msga (SW:MSGA_SALTY)" /codon_start=1 /transl_table=11 /product="virulence protein MsgA" /protein_id="NP_461187.1" /db_xref="GI:16765572" /db_xref="GeneID:1253766" /translation="MPTIKKLADARDVILHELILHELIGHLSCAVVTVKSMQATNVNH VCTKTEKAHLHPILEKMFAVAGK" gene complement(2345408..2345977) /locus_tag="STM2245" /db_xref="GeneID:1253767" CDS complement(2345408..2345971) /locus_tag="STM2245" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_461188.1" /db_xref="GI:16765573" /db_xref="GeneID:1253767" /translation="MYMKRIFIYLLLPCAFACSANDNVFFGKGNKHQISFAAGESIRR GGVEHLYTAFLTYSEPSDFFFLQARNNLELGGFKAKGSDDCSKHSGSVPCNKYNQGVL GISKDVALVHFAGIYTGIGLGAYIKSKSRDDMRVNSAFTFGEKAFLGWNFGAFSTEAY IRHFSNGSLTDKNSGHNFVGASISYNF" regulatory complement(2345972..2345977) /regulatory_class="ribosome_binding_site" /locus_tag="STM2245" /note="putative RBS for STM2245; RegulonDB:STMS1H002382" gene 2346688..2347348 /gene="narP" /locus_tag="STM2246" /db_xref="GeneID:1253768" regulatory 2346688..2346693 /regulatory_class="ribosome_binding_site" /gene="narP" /locus_tag="STM2246" /note="putative RBS for narP; RegulonDB:STMS1H002383" CDS 2346701..2347348 /gene="narP" /locus_tag="STM2246" /note="similar to E. coli nitrate/nitrite response regulator (sensor NarQ) (AAC75253.1); Blastp hit to AAC75253.1 (215 aa), 88% identity in aa 1 - 215" /codon_start=1 /transl_table=11 /product="DNA-binding response regulator" /protein_id="NP_461189.1" /db_xref="GI:16765574" /db_xref="GeneID:1253768" /translation="MPEVTPFQVLIVDDHPLMRRGIRQLLELDPAFHVVAEAGDGASA IDLANRIEPDLILLDLNMKGLSGLDTLNALRRDGVTAQIIILTVSDSASDIYALIDAG ADGYLLKDSDPEVLLEAIRKGANGGKVFSDRVNEYLRERERFGAQEDPFSILTERELD VLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQTRGMQ" gene complement(2347392..2348446) /gene="ccmH" /locus_tag="STM2247" /db_xref="GeneID:1253769" CDS complement(2347392..2348435) /gene="ccmH" /locus_tag="STM2247" /note="cytochrome c-type biogenesis; similar to E. coli possible subunit of heme lyase (AAC75254.1); Blastp hit to AAC75254.1 (350 aa), 73% identity in aa 1 - 342" /codon_start=1 /transl_table=11 /product="cytochrome c biogenesis protein CcmH" /protein_id="NP_461190.1" /db_xref="GI:16765575" /db_xref="GeneID:1253769" /translation="MRLLPGMVMLMLVLVIAGSARATTDVMPFKDEAQEQQFRQLTEQ LRCPKCQNNSIADSNAMIATDMRRRVYDLMQEGKSRQEIIDYMVARYGNFVTYDPPLT PLTVLLWVLPLATIVAGGWIIVARTRRRVRIRQDVLADAIPAAGPRAGWGAYVPGVVM ALVVAAISYSQTGSYPQVRAWQQATAQTPGLLARALDPQAQPLNEEEMARLALGLRTR LQNDAGNVEGWLMLGRTGMVLGNAGTATGAYANAYRLDPKNRDAALGYAEALTRSSDP EDNRRGGELLRQLVSRDHTDIRVLSLYAFSAFEQQRFGEAVAAWEMMLKLLPAGDARR AVIERSIRLAQEK" gene complement(2348432..2349000) /gene="ccmG" /locus_tag="STM2248" /db_xref="GeneID:1253770" CDS complement(2348432..2348989) /gene="ccmG" /locus_tag="STM2248" /note="cytochrome c-type biogenesis; similar to E. coli disulfide oxidoreductase (in biogenesis of cytochrome c? (AAC75255.1); Blastp hit to AAC75255.1 (185 aa), 87% identity in aa 1 - 185" /codon_start=1 /transl_table=11 /product="thiol:disulfide interchange protein" /protein_id="NP_461191.1" /db_xref="GI:16765576" /db_xref="GeneID:1253770" /translation="MKRNVLLLPLLIFLLIAAALLWQLARNAQGDDPTNLESALTGKP VPAFRLESLETPGQYYQAEVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVG LNYKDDRAKAVAWLKELGNPYALSLSDSDGMLGLDLGVYGAPETFLIDGRGIIRYRHA GDLNARVWESELKPLWDRYSREAAQ" regulatory complement(2348441..2348446) /regulatory_class="ribosome_binding_site" /gene="ccmG" /locus_tag="STM2248" /note="putative RBS for ccmH; RegulonDB:STMS1H002384" gene complement(2348986..2350931) /gene="ccmF" /locus_tag="STM2249" /db_xref="GeneID:1253771" CDS complement(2348986..2350917) /gene="ccmF" /locus_tag="STM2249" /note="similar to E. coli cytochrome c-type biogenesis protein (AAC75256.1); Blastp hit to AAC75256.1 (647 aa), 85% identity in aa 1 - 646" /codon_start=1 /transl_table=11 /product="c-type cytochrome biogenesis protein CcmF" /protein_id="NP_461192.1" /db_xref="GI:16765577" /db_xref="GeneID:1253771" /translation="MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAW LLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLL MSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRD LNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVF LTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWT LLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRG HRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFN TMFTWLMVPFALLLGVGPLVRWGRDRPRNIRTLLLTALVSTLVLSVLLPWLLEDKIIA MTAVGMAMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYS VERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRL YNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGG LLCLADPRYRRRKPLPEAG" regulatory complement(2348995..2349000) /regulatory_class="ribosome_binding_site" /gene="ccmG" /locus_tag="STM2248" /note="putative RBS for ccmG; RegulonDB:STMS1H002385" gene complement(2350914..2351404) /gene="ccmE" /locus_tag="STM2250" /db_xref="GeneID:1253772" CDS complement(2350914..2351393) /gene="ccmE" /locus_tag="STM2250" /note="cytochrome c-type biogenesis protein; similar to E. coli cytochrome c biogenesis, possible subunit of a heme lyase (AAC75257.1); Blastp hit to AAC75257.1 (159 aa), 82% identity in aa 1 - 159" /codon_start=1 /transl_table=11 /product="cytochrome c biogenesis protein CcmE" /protein_id="NP_461193.1" /db_xref="GI:16765578" /db_xref="GeneID:1253772" /translation="MNLRRKNRLWVVCAVLAGLGLTTALVLYALRANIDLFYTPGEIL YGKRETQQLPAAGQRLRVGGMVMPGSVRRDPDSLKVNFSLYDAEGSVTVSYEGILPDL FREGQGVVVQGTLEKGNHVLAHEVLAKHDENYTPPEVEKAMQENHRRPQRADKDTSS" regulatory complement(2350926..2350931) /regulatory_class="ribosome_binding_site" /gene="ccmE" /locus_tag="STM2250" /note="putative RBS for ccmF; RegulonDB:STMS1H002386" gene complement(2351390..2351614) /gene="ccmD" /locus_tag="STM2251" /db_xref="GeneID:1253773" CDS complement(2351390..2351602) /gene="ccmD" /locus_tag="STM2251" /note="cytochrome c-type biogenesis protein; similar to E. coli heme exporter protein C (AAC75258.1); Blastp hit to AAC75258.1 (69 aa), 77% identity in aa 1 - 69" /codon_start=1 /transl_table=11 /product="heme exporter CcmD" /protein_id="NP_461194.1" /db_xref="GI:16765579" /db_xref="GeneID:1253773" /translation="MSPAFSSWSDFFAMGGYAFFVWLAVAMTVAPLALLALHTVLQRR AILRGVAQQRAREARMRAAQAQQEAA" regulatory complement(2351399..2351404) /regulatory_class="ribosome_binding_site" /gene="ccmD" /locus_tag="STM2251" /note="putative RBS for ccmE; RegulonDB:STMS1H002387" gene complement(2351599..2352356) /gene="ccmC" /locus_tag="STM2252" /db_xref="GeneID:1253774" CDS complement(2351599..2352336) /gene="ccmC" /locus_tag="STM2252" /note="ABC superfamily (membrane); cytochrome c-type biogenesis protein; similar to E. coli heme exporter protein C (AAC75259.1); Blastp hit to AAC75259.1 (245 aa), 86% identity in aa 1 - 245" /codon_start=1 /transl_table=11 /product="heme ABC transporter permease" /protein_id="NP_461195.1" /db_xref="GI:16765580" /db_xref="GeneID:1253774" /translation="MWKTLHQLAAPPRLYQICGRLVPWLAAAGIIVLATGWVRGFGFA PADYQQGEGYRIMYLHVPAAIWSMGIYAAMAVAAFTGLVWQMKMASLAVAAMAPVGAV YTFIALVTGAAWGKPMWGTWWVWDARLTSELVLLFLYAGVIALWHAFDDRKMAGRAAG ILVLVGVVNLPVIHYSVEWWNTLHQGSTRMQQSIDPAMRSPLRWAIAGYLLLFMTLSL MRMRNLILLMEKRRPWVSELILKRGHR" regulatory complement(2351609..2351614) /regulatory_class="ribosome_binding_site" /gene="ccmD" /locus_tag="STM2251" /note="putative RBS for ccmD; RegulonDB:STMS1H002388" regulatory complement(2352351..2352356) /regulatory_class="ribosome_binding_site" /gene="ccmC" /locus_tag="STM2252" /note="putative RBS for ccmC; RegulonDB:STMS1H002389" gene complement(2352388..2353063) /gene="ccmB" /locus_tag="STM2253" /db_xref="GeneID:1253775" CDS complement(2352388..2353047) /gene="ccmB" /locus_tag="STM2253" /note="cytochrome c-type biogenesis protein; similar to E. coli heme exporter protein B, cytochrome c-type biogenesis protein (AAC75260.1); Blastp hit to AAC75260.1 (220 aa), 84% identity in aa 2 - 220" /codon_start=1 /transl_table=11 /product="heme exporter CcmB" /protein_id="NP_461196.1" /db_xref="GI:16765581" /db_xref="GeneID:1253775" /translation="MMWRVFCLELRVAFRHGADIAGPLWFFLMVITLFPLSVGPQPQL LARIAPGIIQVAALLASLLALERLFRDDLQDGSLEQLMLLPVPLPAVVLAKVLAHWAV TGLPLIMLSPLVALLLGMDVYGWKIMALTLLLGTPALGFLAAPGVALTAGLRRGGVLL GILVLPLSVPVLIFAAAAMDAASMHLPADGYLAVLGALLAGSATLSPFATAAALRLSV Q" gene complement(2353044..2353681) /gene="ccmA" /locus_tag="STM2254" /db_xref="GeneID:1253776" CDS complement(2353044..2353661) /gene="ccmA" /locus_tag="STM2254" /note="cytochrome c-type biogenesis protein; similar to E. coli ATP binding protein of heme exporter A (AAC75261.1); Blastp hit to AAC75261.1 (205 aa), 79% identity in aa 1 - 200" /codon_start=1 /transl_table=11 /product="heme ABC transporter ATP-binding protein CcmA" /protein_id="NP_461197.1" /db_xref="GI:16765582" /db_xref="GeneID:1253776" /translation="MLEARDLYCERDERTLFRGLSFTVEAGEWVQVTGGNGAGKTTLL RLLTGLARPDGGEVYWQGEPLRRVRDSFHRSLLWIGHQPGIKTRLTARENLHFFHPGD GARLPEALAQAGLAGFEDVPVAQLSAGQQRRVALARLWLTRAALWVLDEPFTAIDVNG VARLTRRMAAHTAQGGMVILTTHQPLPGAADTVRRLALTGGGAGL" regulatory complement(2353058..2353063) /regulatory_class="ribosome_binding_site" /gene="ccmA" /locus_tag="STM2254" /note="putative RBS for ccmB; RegulonDB:STMS1H002390" regulatory complement(2353676..2353681) /regulatory_class="ribosome_binding_site" /gene="ccmA" /locus_tag="STM2254" /note="putative RBS for ccmA; RegulonDB:STMS1H002391" gene complement(2353682..2354293) /gene="napC" /locus_tag="STM2255" /db_xref="GeneID:1253777" CDS complement(2353682..2354284) /gene="napC" /locus_tag="STM2255" /note="cytochrome c-type biogenesis protein; similar to E. coli cytochrome c-type protein (AAC75262.1); Blastp hit to AAC75262.1 (200 aa), 88% identity in aa 1 - 200" /codon_start=1 /transl_table=11 /product="cytochrome c-type protein NapC" /protein_id="NP_461198.1" /db_xref="GI:16765583" /db_xref="GeneID:1253777" /translation="MENSNRKPGWIKRVWRWWRSPSRLALGTLLLIGFIGGIIFWGGF NTGMEKANTEEFCISCHEMRNTVYEEYMETVHYNNRSGVRATCPDCHVPHEWGPKMIR KIKASKELYAKVFGLIDTPQKFEAHRLTMAQNEWRRMKDNNSQECRNCHNFDFMDLTA QKGVAAKMHDQAVKDGQTCIDCHKGIAHKLPDMRDVKPGF" regulatory complement(2354288..2354293) /regulatory_class="ribosome_binding_site" /gene="napC" /locus_tag="STM2255" /note="putative RBS for napC; RegulonDB:STMS1H002392" gene complement(2354294..2354743) /gene="napB" /locus_tag="STM2256" /db_xref="GeneID:1253778" CDS complement(2354294..2354743) /gene="napB" /locus_tag="STM2256" /note="complexes with NapA; similar to E. coli cytochrome c-type protein (AAC75263.1); Blastp hit to AAC75263.1 (156 aa), 91% identity in aa 8 - 156" /codon_start=1 /transl_table=11 /product="nitrate reductase" /protein_id="NP_461199.1" /db_xref="GI:16765584" /db_xref="GeneID:1253778" /translation="MKSHDLMKALCQWMATLALVVSGAVWAANGVDLSQSPEVSGTQE GAIRMPKEQERMPLNYVNQPPMIPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISP THFMDSDGKVSGNVAPRRYFCLQCHVPQSDTAPIIDNTFTPSQGYGK" gene complement(2354859..2355741) /gene="napH" /locus_tag="STM2257" /db_xref="GeneID:1253779" CDS complement(2354859..2355728) /gene="napH" /locus_tag="STM2257" /note="electron transfer; similar to E. coli ferredoxin-type protein: electron transfer (AAC75264.1); Blastp hit to AAC75264.1 (287 aa), 88% identity in aa 1 - 280" /codon_start=1 /transl_table=11 /product="quinol dehydrogenase ferredoxin subunit NapH" /protein_id="NP_461200.1" /db_xref="GI:16765585" /db_xref="GeneID:1253779" /translation="MANRKRDAGREARAKKGWWRSHRWLVLRRISQFMVLGMFLSGPW LGFWVLHGNYSSSLLFDTLPLTDPLITLESLASGHLPATVALTGAVIIAVLYALAGKR LFCSWVCPLNPVTDLANWMRRKFDLNQSATIPRHIRYVLLVVVLIGSALTGTLLWEWI NPVSLLGRSLIMGFSSGALLIIALFLFDLLVVEHGWCGHICPMGALYGVLGSKGVVTV TAKKREKCNRCMDCFHVCPEPHVLRAPVLDEQSPAQVTHRDCMTCGRCVDVCSEDVFT ITIRNIIRDASRR" gene complement(2355715..2356425) /gene="napG" /locus_tag="STM2258" /db_xref="GeneID:1253780" CDS complement(2355715..2356410) /gene="napG" /locus_tag="STM2258" /note="electron transfer; similar to E. coli ferredoxin-type protein: electron transfer (AAC75265.1); Blastp hit to AAC75265.1 (231 aa), 94% identity in aa 1 - 231" /codon_start=1 /transl_table=11 /product="ferredoxin-type protein NapG" /protein_id="NP_461201.1" /db_xref="GI:16765586" /db_xref="GeneID:1253780" /translation="MSRTAKPQNGRRRFLRDVVRTAGGLAAVGVALGLQQQTARASGV RLRPPGALNENVFASACVRCGQCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMC EDIPCAKVCPSGALNKDIASIDDSRMGLAVLLDQENCLNFQGLRCDVCYRECPKIDEA ITLELDRNMRTGKHARFLPTVHSDACTGCGKCEKVCVLEQPAIKVLPLSLAKGELGHH YRFGWLEGKDGKS" regulatory complement(2355736..2355741) /regulatory_class="ribosome_binding_site" /gene="napG" /locus_tag="STM2258" /note="putative RBS for napH; RegulonDB:STMS1H002393" gene complement(2356417..2358914) /gene="napA" /locus_tag="STM2259" /db_xref="GeneID:1253781" CDS complement(2356417..2358903) /gene="napA" /locus_tag="STM2259" /EC_number="1.7.99.4" /note="complexes with NapB; similar to E. coli probable nitrate reductase 3 (AAC75266.1); Blastp hit to AAC75266.1 (828 aa), 94% identity in aa 1 - 828" /codon_start=1 /transl_table=11 /product="nitrate reductase catalytic subunit" /protein_id="NP_461202.1" /db_xref="GI:16765587" /db_xref="GeneID:1253781" /translation="MKLSRRSFMKANAVAAAAAAAGLSVPGVARAVVGQQEAIKWDKA PCRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPML RMKDGSYHKDGEFTPVSWEQAFDVMEEKFKTSLKEKGPEAIGMFGSGQWTIWEGYAAA KLFKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGSNMAE MHPILWSRITNRRLSDPNVKVAVLSTFQHRSFELADNGIVFTPQSDLVILNYIANYII QNNAVNQDFFTKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFDEYKAFVA EYTLDKTAEMTGVPKDQLEQLAQLYADPNKRVISYWTMGFNQHTRGVWANNLVYNLHL LTGKISQPGCGPFSLTGQPSACGTAREVGTFSHRLPADMVVTNEKHRDICEKHWQIPA GTIPAKVGLHAVAQDRALKDGKLNVYWVMCNNNMQAGPNINEDRMPGWRDPRNFIIVS DPYPTVSALSADLILPTAMWVEKEGAYGNAERRTQFWRQQIKAPGEAKSDLWQLVQFS RRFKTEEVWPEALLAQKPELRGKTLYDVLFATPAVSKFPLSELKEDQLNDESRELGFY LQKGLFEEYAWFGRGHGHDLAPFDDYHNARGLRWPVVEGKETQWRYSEGNDPYVKAGE GYKFYGKPDGKAVIFALPFEPAAESPDNEYDLWLSTGRVLEHWHTGSMTRRVPELHRA FPEAVVFIHPLDAKARDLRRGDKVKVSSRRGEVISIVETRGRNRPPQGLVYMPFFDAA QLVNNLTLDATDPLSKETDFKKCAVKLAKV" regulatory complement(2356420..2356425) /regulatory_class="ribosome_binding_site" /gene="napG" /locus_tag="STM2258" /note="putative RBS for napG; RegulonDB:STMS1H002394" gene complement(2358900..2359176) /gene="napD" /locus_tag="STM2260" /db_xref="GeneID:1253782" CDS complement(2358900..2359163) /gene="napD" /locus_tag="STM2260" /note="similar to E. coli orf, hypothetical protein (AAC75267.1); Blastp hit to AAC75267.1 (87 aa), 81% identity in aa 1 - 87" /codon_start=1 /transl_table=11 /product="nitrate reductase" /protein_id="NP_461203.1" /db_xref="GI:16765588" /db_xref="GeneID:1253782" /translation="MRTNWQVCSLVVQAKSQNIAAIGTQLNTLPGCEVALSDVESGQL IVVAEADQSETLMQTIESVRNVEGVLAVSLVYHQQDEQGEETP" regulatory complement(2358909..2358914) /regulatory_class="ribosome_binding_site" /gene="napD" /locus_tag="STM2260" /note="putative RBS for napA; RegulonDB:STMS1H002395" gene complement(2359153..2359660) /gene="napF" /locus_tag="STM2261" /db_xref="GeneID:1253783" CDS complement(2359153..2359644) /gene="napF" /locus_tag="STM2261" /note="electron transfer; similar to E. coli ferredoxin-type protein: electron transfer (AAC75268.1); Blastp hit to AAC75268.1 (164 aa), 76% identity in aa 3 - 164" /codon_start=1 /transl_table=11 /product="ferredoxin-type protein NapF" /protein_id="NP_461204.1" /db_xref="GI:16765589" /db_xref="GeneID:1253783" /translation="MVDLSRRSMLTGSWRNASNGILPPWARETTYFLAHCLRCDACIQ ACEADILQRGAGGYPSVDFKRGECSFCYACAQACTESLFLPRHTRAWDLVFTLTENCL ARQSVECHRCQDSCEPMAITFRPTLSGIYQPQLDSQACNGCGACVAICPVSAIKAENH HAH" regulatory complement(2359171..2359176) /regulatory_class="ribosome_binding_site" /gene="napD" /locus_tag="STM2260" /note="putative RBS for napD; RegulonDB:STMS1H002396" regulatory complement(2359655..2359660) /regulatory_class="ribosome_binding_site" /gene="napF" /locus_tag="STM2261" /note="putative RBS for napF; RegulonDB:STMS1H002397" gene 2360058..2360552 /gene="eco" /locus_tag="STM2262" /db_xref="GeneID:1253784" CDS 2360058..2360552 /gene="eco" /locus_tag="STM2262" /note="serine protease inhibitor; similar to E. coli ecotin, a serine protease inhibitor (AAC75269.1); Blastp hit to AAC75269.1 (162 aa), 79% identity in aa 1 - 162" /codon_start=1 /transl_table=11 /product="ecotin" /protein_id="NP_461205.1" /db_xref="GI:16765590" /db_xref="GeneID:1253784" /translation="MKMFVPAVVFAALASASAWANNGDTAQPLEKIAPYPQAEKGMKR QVITLTPQQDESTLKVELLIGQTLNVDCNQHRLGGTLETKTLEGWGYDYYVFDNVTSP VSTMMACPEGKKEQKFVTAWLGEDGMLRYNSKLPIVVYTPANVDVKYRIWKADANVQN AVAR" gene complement(2360761..2362417) /gene="yojI" /locus_tag="STM2263" /db_xref="GeneID:1253785" CDS complement(2360761..2362404) /gene="yojI" /locus_tag="STM2263" /note="ATPase component; similar to E. coli putative ATP-binding component of a transport system (AAC75271.1); Blastp hit to AAC75271.1 (547 aa), 90% identity in aa 1 - 547" /codon_start=1 /transl_table=11 /product="multidrug ABC transporter permease/ATP-binding protein" /protein_id="NP_461206.1" /db_xref="GI:16765591" /db_xref="GeneID:1253785" /translation="MELLILVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETV DTTVMVLPEFLGLLLLLMVVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQL GSASLLAGLTSDIRNITIAFVRLPELVQGIILTVGSAAYLAMLSTKMLLVTAIWMVVT IWGGFVLVARVYQHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEQIFQQCYTPDA KEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFWMANSLGWADTNVAATYSLTLLFLR TPLLSAVGALPTLLTAQVAFNKLNKFALAPYKPDFPQPKAFPDWKTLELRNVVFHYQD NAFSVGPINLTIHRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGTILLDGQPIAAGQP EDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEKWLEHLKMTHKLELNDGRILNLKL SKGQKKRIALLLALAEERDIILLDEWAADQDPHFRREFYQVLLPLMQEMGKTIFAISH DDHYFIHADRLLEMRNGQLTELTGDERDAASRDAVARTA" regulatory complement(2362412..2362417) /regulatory_class="ribosome_binding_site" /gene="yojI" /locus_tag="STM2263" /note="putative RBS for yojI; RegulonDB:STMS1H002398" gene complement(2362480..2363222) /gene="alkB" /locus_tag="STM2264" /db_xref="GeneID:1253786" CDS complement(2362480..2363130) /gene="alkB" /locus_tag="STM2264" /note="alkylated DNA repair protein ALKB. (SW:ALKB_SALTY)" /codon_start=1 /transl_table=11 /product="alpha-ketoglutarate-dependent dioxygenase AlkB" /protein_id="NP_461207.1" /db_xref="GI:16765592" /db_xref="GeneID:1253786" /translation="MLDLFADEAPWQEPLAPGAVVLRRFAFRAAQSLLDDIGFVASQS PFRQMVTPGGYTMSVAMTNCGALGWTTDRHGYCYAVRDPLTDKPWPALPLSFASVCRQ AAIAAGYASFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGVPAVFQFGGLR RSDPIQRILLEHGDIVVWGGESRLFYHGIQPLKAGFHPMTGEFRYNLTFRQAAEKE" gene complement(2363133..2364246) /gene="ada" /locus_tag="STM2265" /db_xref="GeneID:1253787" CDS complement(2363133..2364194) /gene="ada" /locus_tag="STM2265" /EC_number="2.1.1.63" /note="bifunctional; ADA regulatory protein (regulatory protein of adaptative response). (SW:ADA_SALTY)" /codon_start=1 /transl_table=11 /product="bifunctional transcriptional regulator/O6-methylguanine-DNA methyltransferase" /protein_id="NP_461208.1" /db_xref="GI:16765593" /db_xref="GeneID:1253787" /translation="MMKKALLIDDECWLRVQARDASADGRFVFAVRTTGVFCRPSCRS KRALRKNVRFFANAQQALDAGFRPCKRCQPDNARAQQRRLDKIACACRLLEQETPVTL AFLAQAVAMSPFHLHRLFKASTGMTPKGWQQAWRARRLREALAKGEPITAAIYRAGFP DSSSYYRHADQTLGMTAKQFRKGGDNVSVRYALTDWVYGRCLVAESERGICAILPGDS DDALLAELHTLFPSARHEPADALFQQRVRQVVAAINTRDVLLSLPLDIQGTAFQQQVW QALCAIPCGETVSYQQLAATIGKPTAVRAVASACGANKLAMVIPCHRVVRRDGALSGY RWGVRRKAQLLKREAQKEE" regulatory complement(2363136..2363141) /regulatory_class="ribosome_binding_site" /gene="alkB" /locus_tag="STM2264" /note="putative RBS for alkB; RegulonDB:STMS1H002399" regulatory complement(2363197..2363205) /regulatory_class="minus_10_signal" /gene="alkB" /locus_tag="STM2264" /note="putative -10_signal for alkB; RegulonDB:STMLTH004529" regulatory complement(2363214..2363222) /regulatory_class="minus_35_signal" /gene="alkB" /locus_tag="STM2264" /note="putative -35_signal for alkB; RegulonDB:STMLTH004529" regulatory complement(2364198..2364203) /regulatory_class="ribosome_binding_site" /gene="ada" /locus_tag="STM2265" /note="putative RBS for ada; RegulonDB:STMS1H002400" regulatory complement(2364219..2364227) /regulatory_class="minus_10_signal" /gene="ada" /locus_tag="STM2265" /note="putative -10_signal for ada; RegulonDB:STMLTH004530" regulatory complement(2364238..2364246) /regulatory_class="minus_35_signal" /gene="ada" /locus_tag="STM2265" /note="putative -35_signal for ada; RegulonDB:STMLTH004530" gene complement(2364275..2365341) /gene="apbE" /locus_tag="STM2266" /db_xref="GeneID:1253788" CDS complement(2364275..2365327) /gene="apbE" /locus_tag="STM2266" /note="thiamine biosynthesis lipoprotein APBE precursor. (SW:APBE_SALTY)" /codon_start=1 /transl_table=11 /product="FAD:protein FMN transferase ApbE" /protein_id="NP_461209.1" /db_xref="GI:16765594" /db_xref="GeneID:1253788" /translation="MKMTFCRAVCLAAAFLLMGCDEAPETTTASPAAQVLEGKTMGTL WRVSVVGIDAKRAAELQTKIQTQLDADDWLLSTYKNDSALMRFNHSRSLAPWPVSEAM ADIVTSALRIGAKTDGAMDITVGPLVNLWGFGPDRQPLHIPTPAQIDAAKAKTGLQHL QVIDRAGHQFLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGIARYLVSVGGALSSRG MNAQGQPWRVAIQKPTDRENAVQAIVDINGHGISTSGSYRNYYELDGKRVSHVIDPQT GRPIEHNLVSVTVIAPTALEADGWDTGLMVLGTQKAQEVVRREGLAVFMIMKEGEGFK TWMSPQFKTFLVSDKN" protein_bind complement(2364407..2364427) /gene="apbE" /locus_tag="STM2266" /note="putative binding site for Ada, RegulonDB: STMS1H000002" /bound_moiety="Ada" regulatory complement(2365336..2365341) /regulatory_class="ribosome_binding_site" /gene="apbE" /locus_tag="STM2266" /note="putative RBS for apbE; RegulonDB:STMS1H002401" gene complement(2365442..2366750) /gene="ompC" /locus_tag="STM2267" /db_xref="GeneID:1253789" CDS complement(2365442..2366578) /gene="ompC" /locus_tag="STM2267" /note="porin; outer membrane protein C precursor (porin OMPC). (SW:OMPC_SALTY)" /codon_start=1 /transl_table=11 /product="porin OmpC" /protein_id="NP_461210.1" /db_xref="GI:16765595" /db_xref="GeneID:1253789" /translation="MKVKVLSLLVPALLVAGAANAAEIYNKDGNKLDLFGKVDGLHYF SDDKGSDGDQTYMRIGFKGETQVNDQLTGYGQWEYQIQGNQTEGSNDSWTRVAFAGLK FADAGSFDYGRNYGVTYDVTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNTDFFGL VDGLDFALQYQGKNGSVSGENTNGRSLLNQNGDGYGGSLTYAIGEGFSVGGAITTSKR TADQNNTANARLYGNGDRATVYTGGLKYDANNIYLAAQYSQTYNATRFGTSNGSNPST SYGFANKAQNFEVVAQYQFDFGLRPSVAYLQSKGKDISNGYGASYGDQDIVKYVDVGA TYYFNKNMSTYVDYKINLLDKNDFTRDAGINTDDIVALGLVYQF" regulatory complement(2366586..2366591) /regulatory_class="ribosome_binding_site" /gene="ompC" /locus_tag="STM2267" /note="putative RBS for ompC; RegulonDB:STMS1H002402" protein_bind complement(2366691..2366705) /gene="ompC" /locus_tag="STM2267" /note="putative binding site for Lrp, RegulonDB: STMS1H000255" /bound_moiety="Lrp" protein_bind complement(2366713..2366725) /gene="ompC" /locus_tag="STM2267" /note="putative binding site for OmpR, RegulonDB: STMS1H000327" /bound_moiety="OmpR" regulatory complement(2366726..2366734) /regulatory_class="minus_10_signal" /gene="ompC" /locus_tag="STM2267" /note="putative -10_signal for ompC; RegulonDB:STMLTH004531" regulatory complement(2366742..2366750) /regulatory_class="minus_35_signal" /gene="ompC" /locus_tag="STM2267" /note="putative -35_signal for ompC; RegulonDB:STMLTH004531" protein_bind complement(2366747..2366757) /note="putative binding site for OmpR, RegulonDB: STMS1H000332" /bound_moiety="OmpR" protein_bind complement(2366807..2366819) /note="putative binding site for OmpR, RegulonDB: STMS1H000333" /bound_moiety="OmpR" protein_bind complement(2366825..2366839) /note="putative binding site for IHF, RegulonDB: STMS1H000222" /bound_moiety="IHF" gene complement(2366829..2367009) /gene="micF" /locus_tag="STM2268" /db_xref="GeneID:1253790" ncRNA complement(2366829..2367004) /ncRNA_class="other" /gene="micF" /locus_tag="STM2268" /product="regulatory RNA" /db_xref="GeneID:1253790" regulatory complement(2367004..2367009) /regulatory_class="ribosome_binding_site" /gene="micF" /locus_tag="STM2268" /note="putative RBS for micF; RegulonDB:STMS1H002403" gene 2367291..2369976 /gene="yojN" /locus_tag="STM2269" /db_xref="GeneID:1253791" regulatory 2367291..2367296 /regulatory_class="ribosome_binding_site" /gene="yojN" /locus_tag="STM2269" /note="putative RBS for yojN; RegulonDB:STMS1H002404" CDS 2367307..2369976 /gene="yojN" /locus_tag="STM2269" /EC_number="2.7.3.-" /note="similar to E. coli putative 2-component sensor protein (AAC75276.1); Blastp hit to AAC75276.1 (890 aa), 85% identity in aa 1 - 890" /codon_start=1 /transl_table=11 /product="phosphotransferase RcsD" /protein_id="NP_461211.1" /db_xref="GI:16765596" /db_xref="GeneID:1253791" /translation="MSQSDTTVSTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNA WLKDKSYQIVDITHAIHKRVDTWRYVTWQIYDNIAATTTPSTGEGLQETRLKQDVYYL EKPRRKTEALIFGSHDSATLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLILIST LPLKDLSSGFKESTIGNIVDSRRAEMLQQANALDERESFSSLRKLAWQNGHYFTLRTT FNQPGHLATVVAFDLPINDLIPPGMPLDSFRIEPDATQATGRSSEKEAPDSVTISFNG SKIEISSALNSTGMRLIWQVPFGTLLLDTLQNILLPLLLNIGLLALALFGYATFRHQP GRSTESTSGNAANNELRVLRAINEEIVSLLPLGLLVYDQEGNRTVISNKIADHLLPHL NLQNITSMAEQHQGVIQATINNELYEIRLFRSQIAPRTQIFIIRDQDREVLVNKKLKQ AQRLYEKNQQGRAAFMQNISNTLKEPVRQLAVNAAAVTTPESLKLADQADVLVRMIDE IQLANMLENDAWKSEATLFSLQDLIDEVVPEVLPAIKRKGLQLLINNHLSGNDERWGD RDALRRILLLLIQYAVTTTAMGKITLEVEQDESIAERLTFRILDTGEGVTLNEIDNLH FPYMNETQGDRYGKANPLTFWLCNQLARKLGGHLNIKARETLGTRYTVHVKMLPHDQH TQVEERLLDDVSVMVDVTSNEVRAIVLRQLENWGATCITPDERQISQEYDLFLTDNPS NLTASGLLLSDDESGVRKIGPGQLRVNFNMSNAMQEAVLQLIEEQLAQEEIPASPLGG DENAELHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPGK QLCETLEHLIREKDAPGIEKYISDIDAYVKSLL" gene 2369978..2370643 /gene="rcsB" /locus_tag="STM2270" /db_xref="GeneID:1253792" regulatory 2369978..2369983 /regulatory_class="ribosome_binding_site" /gene="rcsB" /locus_tag="STM2270" /note="putative RBS for rcsB; RegulonDB:STMS1H002405" CDS 2369993..2370643 /gene="rcsB" /locus_tag="STM2270" /note="positive regulator; similar to E. coli positive response regulator for colanic capsule biosynthesis, (sensor, RcsC) (AAC75277.1); Blastp hit to AAC75277.1 (216 aa), 99% identity in aa 1 - 216" /codon_start=1 /transl_table=11 /product="DNA-binding response regulator" /protein_id="NP_461212.1" /db_xref="GI:16765597" /db_xref="GeneID:1253792" /translation="MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINN LPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLD IEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR LFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIALLNYLSSVTLSPTDKE" gene complement(2370746..2373608) /gene="rcsC" /locus_tag="STM2271" /db_xref="GeneID:1253793" CDS complement(2370746..2373592) /gene="rcsC" /locus_tag="STM2271" /EC_number="2.7.3.-" /note="regulates colanic capsule biosynthesis; similar to E. coli sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB (AAC75278.1); Blastp hit to AAC75278.1 (933 aa), 89% identity in aa 1 - 931" /codon_start=1 /transl_table=11 /product="two-component system sensor histidine kinase/response regulator" /protein_id="NP_461213.1" /db_xref="GI:16765598" /db_xref="GeneID:1253793" /translation="MKYLASFRTTLKVSRYLFRALALLIWLLIAFVSVFYIVNALHQR ESEIRQEFNLSSDQAQRFIQRTSDVMKELKYIAENRLTAENGVMSSRARDDKMVVPDF EPLFADSDCAAMGSAWRGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGL REMPVERDDALKALHERIMKYRNAPQEESGNNLFWISQGARQGVGYFYALTPVYLANR LQALLGVEQSIRMENFFTPGSLPMGVTIIDENGHSLISLTGPDGIIKAEPRWMQERSW FGYTPGFRELVLKKSLPPSSLSIVYSVPVDLVLERIRILILNAILLNVLVGAGLFTLA RMYERRIFIPAESDAQRLEEHEQFNRKIVASAPVGICILRTIDGVNILSNELAHTYLN MLTHEDRQRLTQIICGQQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRV KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVERLV TAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVLHVRCDGDYLSIRVRDT GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS QFTLRIPLYGAQYPVKKSVEGLAGTCCWLAVRNTSLCQFIETSLARSGVHTQRYEGQE PAADDILIVDDALEHTWQGRAAVVFCRRHIGIPLERAPGEWVHSVASVHELPALLARI YSIELDSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTAND GVDALNVLSKNAIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRC LESGMDSCLSKPVTLDVLKQTLAVYAERVRKTRA" regulatory complement(2373603..2373608) /regulatory_class="ribosome_binding_site" /gene="rcsC" /locus_tag="STM2271" /note="putative RBS for rcsC; RegulonDB:STMS1H002406" gene complement(2373710..2376422) /gene="gyrA" /locus_tag="STM2272" /db_xref="GeneID:1253794" CDS complement(2373710..2376346) /gene="gyrA" /locus_tag="STM2272" /EC_number="5.99.1.3" /note="type II topoisomerase; similar to E. coli DNA gyrase, subunit A, type II topoisomerase (AAC75291.1); Blastp hit to AAC75291.1 (875 aa), 91% identity in aa 1 - 875" /codon_start=1 /transl_table=11 /product="DNA gyrase subunit A" /protein_id="NP_461214.1" /db_xref="GI:16765599" /db_xref="GeneID:1253794" /translation="MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPV HRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYML VDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMP TKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFP TAAIINGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEK IAELVKDKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINM VALHHGQPKIMNLKDIISAFVRHRREVVTRRTIFELRKARDRAHILEALAIALANIDP IIELIRRAPTPAEAKAALISRPWDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYL TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHILGSADRLMEVIREEMEL IRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKG KSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLP LEANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDEL IGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRG EGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMI TDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVA EGDEDIAPEAESDDDVADDADE" regulatory complement(2376357..2376362) /regulatory_class="ribosome_binding_site" /gene="gyrA" /locus_tag="STM2272" /note="putative RBS for gyrA; RegulonDB:STMS1H002407" protein_bind complement(2376389..2376395) /gene="gyrA" /locus_tag="STM2272" /note="putative binding site for CspA, RegulonDB: STMS1H000124" /bound_moiety="CspA" regulatory complement(2376398..2376406) /regulatory_class="minus_10_signal" /gene="gyrA" /locus_tag="STM2272" /note="putative -10_signal for gyrA; RegulonDB:STMLTH004532" regulatory complement(2376414..2376422) /regulatory_class="minus_35_signal" /gene="gyrA" /locus_tag="STM2272" /note="putative -35_signal for gyrA; RegulonDB:STMLTH004532" protein_bind complement(2376463..2376469) /note="putative binding site for CspA, RegulonDB: STMS1H000126" /bound_moiety="CspA" protein_bind complement(2376529..2376535) /note="putative binding site for CspA, RegulonDB: STMS1H000125" /bound_moiety="CspA" gene complement(2376756..2377964) /locus_tag="STM2273" /db_xref="GeneID:1253795" CDS complement(2376756..2377958) /locus_tag="STM2273" /note="similar to E. coli starvation sensing protein (AAC74653.1); Blastp hit to AAC74653.1 (404 aa), 30% identity in aa 198 - 384, 36% identity in aa 1 - 120" /codon_start=1 /transl_table=11 /product="MR-MLE family protein" /protein_id="NP_461215.1" /db_xref="GI:16765600" /db_xref="GeneID:1253795" /translation="MKITSIEVFDCELKKRDQTMSSYNPVLIRVNTDSGLSGIGEVGL AYGAGAKAGVGIIRDLAPLIVGEDPLNIEKIWEFFFRKTFWGMGGGNVFYAGMSAIDI ALWDIKGKYLGVPVYQLLGGKTNEKLRTYASQLQFGWGDKRHILVTPEEYAEAARAAL DDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDAD IIVEIHSLLGTNSAIQFAKAIEKYRIFLYEEPIHPLNSDNMQKVSRSTTIPIATGERS YTRWGYRELLEKQSIAVAQPDLCLCGGITEGKKICDYANIYDTTVQVHVCGGPVSTVA ALHMETAIPNFIIHEHHTNAMKASIRELCTHDYQPENGYYVAPEQPGLGQELNDEVVK EYLAYVIK" regulatory complement(2377959..2377964) /regulatory_class="ribosome_binding_site" /locus_tag="STM2273" /note="putative RBS for STM2273; RegulonDB:STMS1H002408" gene complement(2377973..2379304) /locus_tag="STM2274" /db_xref="GeneID:1253796" CDS complement(2377973..2379298) /locus_tag="STM2274" /note="similar to E. coli putative transport protein (AAC75306.1); Blastp hit to AAC75306.1 (442 aa), 30% identity in aa 18 - 428" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_461216.1" /db_xref="GI:16765601" /db_xref="GeneID:1253796" /translation="MSSPQENLYDAIRIVKRKIIPLAFILYFFNYMDRVNIGFAALRM NESLGITPEDFANISSIFFISYLIFQIPSSIGLQKLGARKWISSIIIGWGAVTGLIFF AKDTQHILLARIFLGVFEAGFFPGMVYYLACWFPARERGKVNSFFMLSIAVASVLAAP MSGWIIEHLNTPDYEGWRWLFAIEGIPTVFLGILTFYLLPDSPEKAKWLTPQQISALV NKLRTDNETAAALNKNTNSSFLSVIKNPVLLQLSFAYMLIQAAALAANYWLPGLVKGF SADFTDTDVGLIMSIPFIFAMFSMPWWGWHSDKKNERKWHAALPMFLAGCGFLMIALV PSMSLRMLGLTFYGVGILSYYGPYWALPSALLSPSGLAISIAFINSCSSLGGFLINKS LGFVSTHYGATGIFIVEAILCFAAVAVLALMKIDVKKEKSQQTNVVSRT" regulatory complement(2379299..2379304) /regulatory_class="ribosome_binding_site" /locus_tag="STM2274" /note="putative RBS for STM2274; RegulonDB:STMS1H002409" gene 2379342..2380232 /locus_tag="STM2275" /db_xref="GeneID:1253797" regulatory 2379342..2379347 /regulatory_class="ribosome_binding_site" /locus_tag="STM2275" /note="putative RBS for STM2275; RegulonDB:STMS1H002410" CDS 2379348..2380232 /locus_tag="STM2275" /note="similar to E. coli orf, hypothetical protein (AAC74613.1); Blastp hit to AAC74613.1 (228 aa), 25% identity in aa 13 - 217" /codon_start=1 /transl_table=11 /product="putative gntR family regulatory protein" /protein_id="NP_461217.3" /db_xref="GI:1109557682" /db_xref="GeneID:1253797" /translation="MLRKKQYNSKANVSYLIYQQANLMKYTITTIKYVNFLISDILDP LILNKLITMEPGLTMEEKKMKNRLKRDFSHISIEIPKSITQVIKEKIREMIIHGDFDL GQAISENELSNILMVSKTPIREAFIWLSYNENLVNIIPRSGTFVFSVTDEDINDLIKM RVILEQGAIREAMEKNANNVIVELSNILSKSAKINAERDTQAYLKLDHDFHYVFVKYA DNKYISQAHLLISARLLAIRYRLDFTAEYITSSNRGHATILDMLKNNNVEGVCNFITH HIGSGFTERARKLLALKA" gene 2380219..2381043 /gene="ubiG" /locus_tag="STM2276" /db_xref="GeneID:1253798" regulatory 2380219..2380227 /regulatory_class="minus_35_signal" /gene="ubiG" /locus_tag="STM2276" /note="putative -35_signal for ubiG; RegulonDB:STMLTH004533" regulatory 2380247..2380255 /regulatory_class="minus_10_signal" /gene="ubiG" /locus_tag="STM2276" /note="putative -10_signal for ubiG; RegulonDB:STMLTH004533" regulatory 2380297..2380302 /regulatory_class="ribosome_binding_site" /gene="ubiG" /locus_tag="STM2276" /note="putative RBS for ubiG; RegulonDB:STMS1H002411" CDS 2380315..2381043 /gene="ubiG" /locus_tag="STM2276" /EC_number="2.1.1.64" /note="3-demethylubiquinone-9 3-methyltransferase. (SW:UBIG_SALTY)" /codon_start=1 /transl_table=11 /product="2-octaprenyl-6-hydroxy phenol methylase" /protein_id="NP_461218.1" /db_xref="GI:16765603" /db_xref="GeneID:1253798" /translation="MNTEKPSVAHNVDHNEIAKFEAVASRWWDLEGEFKPLHRINPLR LGYITERSGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESG IEVEYVQETVEEHAAKHAQQYDVVTCMEMLEHVPDPQSVVHACAQLVKPGGEVFFSTL NRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLSWVDETVLKEQHITGLHYNP ITNTFKLGPGVDVNYMLHTRAKKA" protein_bind 2381121..2381137 /note="putative binding site for FIS, RegulonDB: STMS1H000143" /bound_moiety="FIS" protein_bind 2381239..2381249 /note="putative binding site for DnaA, RegulonDB: STMS1H000136" /bound_moiety="DnaA" protein_bind 2381263..2381273 /note="putative binding site for DnaA, RegulonDB: STMS1H000135" /bound_moiety="DnaA" gene 2381277..2383684 /gene="nrdA" /locus_tag="STM2277" /db_xref="GeneID:1253799" regulatory 2381277..2381285 /regulatory_class="minus_35_signal" /gene="nrdA" /locus_tag="STM2277" /note="putative -35_signal for nrdA; RegulonDB:STMLTH004534" regulatory 2381301..2381309 /regulatory_class="minus_10_signal" /gene="nrdA" /locus_tag="STM2277" /note="putative -10_signal for nrdA; RegulonDB:STMLTH004534" regulatory 2381384..2381389 /regulatory_class="ribosome_binding_site" /gene="nrdA" /locus_tag="STM2277" /note="putative RBS for nrdA; RegulonDB:STMS1H002412" CDS 2381399..2383684 /gene="nrdA" /locus_tag="STM2277" /EC_number="1.17.4.1" /note="ribonucleoside-diphosphate reductase 1 alpha chain. (SW:RIR1_SALTY)" /codon_start=1 /transl_table=11 /product="ribonucleoside-diphosphate reductase subunit alpha" /protein_id="NP_461219.1" /db_xref="GI:16765604" /db_xref="GeneID:1253799" /translation="MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELR SHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL YHHVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNR VTGEIYESAQFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTP TRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHT GCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMD YGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRKQR VKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLN DVNDENGEIALCTLSAFNLGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAM GRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACP WFNETTYAKGILPIDTYKKDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSET SSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLKDAYELLWEMPNNDGYLQLV GIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAED AQDDLAPSIQDDGCESGACKI" gene 2383783..2384927 /gene="nrdB" /locus_tag="STM2278" /db_xref="GeneID:1253800" regulatory 2383783..2383788 /regulatory_class="ribosome_binding_site" /gene="nrdB" /locus_tag="STM2278" /note="putative RBS for nrdB; RegulonDB:STMS1H002413" CDS 2383797..2384927 /gene="nrdB" /locus_tag="STM2278" /EC_number="1.17.4.1" /note="ribonucleoside-diphosphate reductase 1 beta chain. (SW:RIR2_SALTY)" /codon_start=1 /transl_table=11 /product="ribonucleotide-diphosphate reductase subunit beta" /protein_id="NP_461220.1" /db_xref="GI:16765605" /db_xref="GeneID:1253800" /translation="MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQ LSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISI PELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDE LIEMTSYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFA FAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDL FVQAAQQEKEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIP WINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL" gene 2384927..2385181 /gene="yfaE" /locus_tag="STM2279" /db_xref="GeneID:1253801" CDS 2384927..2385181 /gene="yfaE" /locus_tag="STM2279" /note="similar to E. coli orf, hypothetical protein (AAC75296.1); Blastp hit to AAC75296.1 (84 aa), 96% identity in aa 1 - 84" /codon_start=1 /transl_table=11 /product="2Fe-2S ferredoxin" /protein_id="NP_461221.1" /db_xref="GI:16765606" /db_xref="GeneID:1253801" /translation="MGRVTLRITGTQLLCQDEHPSLLAALESHNVEVEYQCREGYCGS CRTRLVAGQVDWITEPLAFIQPGEILPCCCRAKGDIEIEM" gene complement(2385183..2386377) /locus_tag="STM2280" /db_xref="GeneID:1253802" CDS complement(2385183..2386373) /locus_tag="STM2280" /note="similar to E. coli putative transport (AAC76498.1); Blastp hit to AAC76498.1 (419 aa), 26% identity in aa 31 - 407" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_461222.1" /db_xref="GI:16765607" /db_xref="GeneID:1253802" /translation="MKEKLWTKDFWAITIVSFIIFFVFYVLLTLLPIYIADRLHASAD KAGLLVTCFLAAAIVIRPFAGQWVGKYSNKKILVLSSLAFLVITALYPVCHSIESLLF IRVLHGITFGVITTVKGTISARLIPASRRGEGISFFSLAMGLAMVVGPWIGLNMARWD AFTAAFWLCSAVAALGIVLSLIVTVPPVIRHADGSKPNLGFSAMFDRAALPFALVTFF MTFSYAGVSAFLALYARELDLMAAASNFLLCYAILLMICRTFTGNICDKKGPKYVVYP CLLAFTIGLVALGYTNGSIMMIISGGLIGIGYGSVTPVFQTQIISSVEPHKIGVANSL FFNAMDAGMAIGAFIMGMMVESVGYRMIYVAGAVLVVLAGALYAVQMKKRGVMPLVST SELH" regulatory complement(2386372..2386377) /regulatory_class="ribosome_binding_site" /locus_tag="STM2280" /note="putative RBS for STM2280; RegulonDB:STMS1H002414" gene 2386530..2387413 /locus_tag="STM2281" /db_xref="GeneID:1253803" regulatory 2386530..2386535 /regulatory_class="ribosome_binding_site" /locus_tag="STM2281" /note="putative RBS for STM2281; RegulonDB:STMS1H002415" CDS 2386535..2387413 /locus_tag="STM2281" /note="similar to E. coli orf, hypothetical protein (AAC75298.1); Blastp hit to AAC75298.1 (68 aa), 80% identity in aa 1 - 66" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_461223.1" /db_xref="GI:16765608" /db_xref="GeneID:1253803" /translation="MTLTQIHALLAVLEYGGFTEASKRLYMTQSAVSQAISALEEELG VDILIRERRKEIELTAAGSRIVRHLRAIQRDVNAVKEIAEQEKKNPARTLRIGCFPSA CACILPGVIRYFESHHPNVKIIPYEENSTAIIDSLQDGSIDAGFVPFPVNGMYCVPIY RDKFTVVVPENHPLAANSTVTVEELMDEPLIVSKGRYELSIMALFKEKGIEPIFKYEF NHPDTALNFIRQGLGIALLPELTLKATTGKLCSVALEPTFYRQISLLAKEPPVEGSPL FLLQKCMETLTDEGLL" gene complement(2387529..2388614) /gene="glpQ" /locus_tag="STM2282" /db_xref="GeneID:1253804" CDS complement(2387529..2388599) /gene="glpQ" /locus_tag="STM2282" /EC_number="3.1.4.46" /note="similar to E. coli glycerophosphodiester phosphodiesterase, periplasmic (AAC75299.1); Blastp hit to AAC75299.1 (358 aa), 89% identity in aa 1 - 357" /codon_start=1 /transl_table=11 /product="glycerophosphodiester phosphodiesterase" /protein_id="NP_461224.1" /db_xref="GI:16765609" /db_xref="GeneID:1253804" /translation="MKTTLKNLSVALMLAGMTIGSGAVAAEKVVIAHRGASGYLPEHT LPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAI DFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRIHTFEEEIEFVQGLNHSTG KNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKQDNVYLQCFDVAELKRIKNE LEPKMGMDLNLVQLIAYTDWNETQQKQPDGRWVNYNYDWMFKPGAMKQVAEYADGIGP DYHMLVAEGSTKGNIKLTGMVQDAHQNKMVVHPYTVRADQLPDYATDVNQLYDILYNK AGVDGLFTDFPDKAVMFLQKND" gene complement(2388604..2390082) /gene="glpT" /locus_tag="STM2283" /db_xref="GeneID:1253805" CDS complement(2388604..2389962) /gene="glpT" /locus_tag="STM2283" /note="similar to E. coli sn-glycerol-3-phosphate permease (AAC75300.1); Blastp hit to AAC75300.1 (452 aa), 96% identity in aa 1 - 452" /codon_start=1 /transl_table=11 /product="glycerol-3-phosphate transporter" /protein_id="NP_461225.1" /db_xref="GI:16765610" /db_xref="GeneID:1253805" /translation="MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLV RKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV WNCAHNVGGGIPPLLFLLGMAWFNDWKAALYMPAFGAIVVALFAFAMMRDTPQSCGLP PIEEYKNDYPDDYNEKAEEELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI ATIVYWMNPAGNPNVDMACMIIIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLVVVMIGEKRHHDELQLKRN GG" regulatory complement(2388609..2388614) /regulatory_class="ribosome_binding_site" /gene="glpQ" /locus_tag="STM2282" /note="putative RBS for glpQ; RegulonDB:STMS1H002416" regulatory complement(2389971..2389976) /regulatory_class="ribosome_binding_site" /gene="glpT" /locus_tag="STM2283" /note="putative RBS for glpT; RegulonDB:STMS1H002417" regulatory complement(2390055..2390063) /regulatory_class="minus_10_signal" /gene="glpT" /locus_tag="STM2283" /note="putative -10_signal for glpT; RegulonDB:STMLTH004535" gene 2390063..2391863 /gene="glpA" /locus_tag="STM2284" /db_xref="GeneID:1253806" regulatory 2390063..2390071 /regulatory_class="minus_35_signal" /gene="glpA" /locus_tag="STM2284" /note="putative -35_signal for glpA; RegulonDB:STMLTH004536" protein_bind complement(2390071..2390091) /note="putative binding site for CRP, RegulonDB: STMS1H000080" /bound_moiety="CRP" protein_bind complement(2390071..2390091) /note="putative binding site for GlpR, RegulonDB: STMS1H000215" /bound_moiety="GlpR" regulatory complement(2390074..2390082) /regulatory_class="minus_35_signal" /gene="glpT" /locus_tag="STM2283" /note="putative -35_signal for glpT; RegulonDB:STMLTH004535" regulatory 2390087..2390095 /regulatory_class="minus_10_signal" /gene="glpA" /locus_tag="STM2284" /note="putative -10_signal for glpA; RegulonDB:STMLTH004536" protein_bind complement(2390096..2390128) /note="putative binding site for GlpR, RegulonDB: STMS1H000213" /bound_moiety="GlpR" protein_bind 2390111..2390135 /gene="glpA" /locus_tag="STM2284" /note="putative binding site for FNR, RegulonDB: STMS1H000163" /bound_moiety="FNR" protein_bind 2390113..2390133 /gene="glpA" /locus_tag="STM2284" /note="putative binding site for GlpR, RegulonDB: STMS1H000203" /bound_moiety="GlpR" protein_bind complement(2390119..2390139) /note="putative binding site for CRP, RegulonDB: STMS1H000105" /bound_moiety="CRP" protein_bind 2390123..2390143 /gene="glpA" /locus_tag="STM2284" /note="putative binding site for CRP, RegulonDB: STMS1H000106" /bound_moiety="CRP" protein_bind complement(2390141..2390163) /note="putative binding site for GlpR, RegulonDB: STMS1H000212" /bound_moiety="GlpR" protein_bind complement(2390147..2390182) /note="putative binding site for GlpR, RegulonDB: STMS1H000209" /bound_moiety="GlpR" protein_bind 2390155..2390175 /gene="glpA" /locus_tag="STM2284" /note="putative binding site for GlpR, RegulonDB: STMS1H000205" /bound_moiety="GlpR" protein_bind 2390165..2390185 /gene="glpA" /locus_tag="STM2284" /note="putative binding site for GlpR, RegulonDB: STMS1H000211" /bound_moiety="GlpR" protein_bind complement(2390201..2390223) /note="putative binding site for GlpR, RegulonDB: STMS1H000214" /bound_moiety="GlpR" protein_bind 2390205..2390225 /gene="glpA" /locus_tag="STM2284" /note="putative binding site for GlpR, RegulonDB: STMS1H000210" /bound_moiety="GlpR" regulatory 2390224..2390229 /regulatory_class="ribosome_binding_site" /gene="glpA" /locus_tag="STM2284" /note="putative RBS for glpA; RegulonDB:STMS1H002418" CDS 2390235..2391863 /gene="glpA" /locus_tag="STM2284" /EC_number="1.1.5.3" /note="similar to E. coli sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit (AAC75301.1); Blastp hit to AAC75301.1 (542 aa), 92% identity in aa 1 - 542" /codon_start=1 /transl_table=11 /product="sn-glycerol-3-phosphate dehydrogenase subunit A" /protein_id="NP_461226.1" /db_xref="GI:16765611" /db_xref="GeneID:1253806" /translation="MKTRDSQTSDVIIIGGGATGAGIARDCALRGLRVILVERHDIAT GATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTDGLFITLPEDDLA FQATFIRACEAAGIRAEAIDPQQARIIEPSVNPALIGAVKVPDGTVDPFRLTAANMLD AREHGAIVLTAHEVTGLIREGATVCGVHVRNHLTGETQTLHAPVVVNAAGIWGQRIAE YADLSIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSTHIDYN EIDSNRVTADEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIV LFDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCITADTPLPGSKES TEHTLKRIISLPAPLRGSAVYRHGDRTPGWLSEGRQHRSLVCECEAVTAGEVQYAVEN LTVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTAAQSITQLSEFLNERWKG VQPVAWGDALRESEFTRWVYQGLCGLEKEHQDEI" gene 2391840..2393112 /gene="glpB" /locus_tag="STM2285" /db_xref="GeneID:1253807" regulatory 2391840..2391845 /regulatory_class="ribosome_binding_site" /gene="glpB" /locus_tag="STM2285" /note="putative RBS for glpB; RegulonDB:STMS1H002419" CDS 2391853..2393112 /gene="glpB" /locus_tag="STM2285" /EC_number="1.1.5.3" /note="similar to E. coli sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit (AAC75302.1); Blastp hit to AAC75302.1 (419 aa), 81% identity in aa 1 - 419" /codon_start=1 /transl_table=11 /product="anaerobic glycerol-3-phosphate dehydrogenase subunit B" /protein_id="NP_461227.1" /db_xref="GI:16765612" /db_xref="GeneID:1253807" /translation="MKFDTVIMGGGLAGLLCGLQLQQHGLRCAIVTRGQSALHFSSGS LDLLSALPDGQPVTDITAGLDALCRQAPEHPYSRLGAQKVLTLAQQAQTLLNASGAQL YGDVQQAHQRVTPLGTLRSTWLSSPEVPVWPLSAQRICVVGVSGLLDFQAHLAAASLR QRDLNVETAEIDLPELDVLRDNPTEFRAVNIARLLDNEEKWPLLYDALSPIATNCDMI IMPACFGLANDTLWRWLNERLPCALTLLPTLPPSVLGIRLHNQLQRQFVRQGGIWMPG DEVKKVTCRRGTVSEIWTRNHADIPLRPRFAVLASGSFFSSGLVAEREGIREPILGLD VQQTATRAEWYQQHFFDPQPWQQFGVVTDDAFRPSLAGNTVENLYAIGSVLAGFDPIA EGCGGGVCAVSALQAAHHIAERAGEQQ" gene 2393096..2394299 /gene="glpC" /locus_tag="STM2286" /db_xref="GeneID:1253808" regulatory 2393096..2393101 /regulatory_class="ribosome_binding_site" /gene="glpC" /locus_tag="STM2286" /note="putative RBS for glpC; RegulonDB:STMS1H002420" CDS 2393109..2394299 /gene="glpC" /locus_tag="STM2286" /EC_number="1.1.5.3" /note="similar to E. coli sn-glycerol-3-phosphate dehydrogenase (anaerobic), K-small subunit (AAC75303.1); Blastp hit to AAC75303.1 (396 aa), 94% identity in aa 1 - 395" /codon_start=1 /transl_table=11 /product="sn-glycerol-3-phosphate dehydrogenase subunit C" /protein_id="NP_461228.1" /db_xref="GI:16765613" /db_xref="GeneID:1253808" /translation="MSDTRFESCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLK DGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFILSHTDLMG SVSTPFAPVVNTATALKPVRQLLDYALKIDHRRTLPKYSFGTFRRWYRSVAAQQAKYK DQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQ AISNVESLREAIAVKGIPVIATSSTCTFALRDEYPEVLDVDNAGLREHIELATRWLWR KLDAGKTLPLNPLPLKVVYHTPCHMEKMGWTLYTLELLRQIPGLELTVLDSQCCGIAG TYGFKKENYPTSQSIGAPLFRQIEESGADIVVTDCETCKWQIEMSTSKRCEHPITLLA QALG" gene 2394786..2395747 /locus_tag="STM2287" /db_xref="GeneID:1253809" regulatory 2394786..2394791 /regulatory_class="ribosome_binding_site" /locus_tag="STM2287" /note="putative RBS for STM2287; RegulonDB:STMS1H002421" CDS 2394794..2395747 /locus_tag="STM2287" /note="similar to E. coli putative sulfatase / phosphatase (AAC75329.1); Blastp hit to AAC75329.1 (403 aa), 30% identity in aa 27 - 294, 29% identity in aa 297 - 363" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461229.3" /db_xref="GI:1109557683" /db_xref="GeneID:1253809" /translation="MSDEALTLLFSAVENGDQNCIDLLCNLALRNDDLGHRVEKFLFD LFSGKRTGSSDIDKKINQACLVLHQIANNDITKDNTEWKKLHAPSRLLYMAGSATTDL SKKIGIAHKIMGDQFAQTDQEQVGVENLWCGARMLSSDELAAATQGLVQESPLLSVNY PIGLIHPTTKENILSTQLLEKIAQSGLSHNEVFLVNTGDHWLLCLFYKLAEKIKCLIF NTYYDLNENTKQEIIEAAKIAGISESDEVNFIEMNLQNNVPNGCGLFCYHTIQLLSNA GQNDPATTLREFAENFLTLSVEEQALFNTQTRRQIYEYSLQ" gene complement(2395857..2396037) /locus_tag="STM2288" /db_xref="GeneID:1253810" CDS complement(2395857..2396033) /locus_tag="STM2288" /note="similar to E. coli orf, hypothetical protein (AAC75309.1); Blastp hit to AAC75309.1 (400 aa), 83% identity in aa 342 - 397" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461230.1" /db_xref="GI:16765615" /db_xref="GeneID:1253810" /translation="MPDGTYALRMRFSAYRYSLAIRQEVCAVMALNMLRRWLNGEDIT SEHGWIDVVESLTA" regulatory complement(2396032..2396037) /regulatory_class="ribosome_binding_site" /locus_tag="STM2288" /note="putative RBS for STM2288; RegulonDB:STMS1H002422" gene complement(2396039..2396852) /locus_tag="STM2289" /db_xref="GeneID:1253811" CDS complement(2396039..2396842) /locus_tag="STM2289" /note="similar to E. coli orf, hypothetical protein (AAC75305.1); Blastp hit to AAC75305.1 (267 aa), 87% identity in aa 1 - 267" /codon_start=1 /transl_table=11 /product="2-keto-3-deoxy-L-rhamnonate aldolase" /protein_id="NP_461231.1" /db_xref="GI:16765616" /db_xref="GeneID:1253811" /translation="MNALLSNPFKEGLRKGDTQIGLWLSSTTSYMAEIAATSGYDWLL IDGEHAPNTVQDLYHQLQAIAPYASQPVIRPIEGSKALIKQVLDIGAQTLLIPMVDTA EQARQVVSATRYPPLGQRGVGASVARAARWGRIDNYMAQANESLCLLVQVESKVALEN LDAILEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIEACIYRIRAAGKAAGFLAV DPAMAQKCLAWGANFVAVGVDTMLYTEALDSRLAMFKSVQSVSTAKRSY" regulatory complement(2396847..2396852) /regulatory_class="ribosome_binding_site" /locus_tag="STM2289" /note="putative RBS for STM2289; RegulonDB:STMS1H002423" gene complement(2396868..2398169) /gene="yfaV" /locus_tag="STM2290" /db_xref="GeneID:1253812" CDS complement(2396868..2398157) /gene="yfaV" /locus_tag="STM2290" /note="similar to E. coli putative transport protein (AAC75306.1); Blastp hit to AAC75306.1 (442 aa), 91% identity in aa 14 - 442" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_461232.1" /db_xref="GI:16765617" /db_xref="GeneID:1253812" /translation="MSITLLDGVVKKNRARLIPFMLALYVLAFLDRSNIGFAKETYQI DTGLSNEAYALGAGIFFVVYAFLGVPANLLMRKFGARTWIGTTTLLWGFLSAAMAWAD SEAKFLIIRTLLGAAEAGFFPGMIYLTSQWFPQRNRASIMGLFYMGAPLALTLGSPLS GALLEMHGFMGHPGWFWMFVIEGLLAIGAGIFTFFWLDDTPQQARFLSLEEKNALIRQ LASEEEKKVTSRLADALRNGRVWQLAIIYLTIQVAVYGLIFFLPTQVAALLGTKVGFT ASVVTAVPWVAALLGTWLIPRYSDRTGDRRNVAAVTLLAAGIGIGLSGLVSPVLAILA LCVAAVGFIAVQPVFWTMPTQLLSGTALAAGIGFVNLFGAVGGFIAPILRVKAETLFA SDAAGLLTLAGVAIIGSLIIFTLSVNRPVAQSGAAHH" regulatory complement(2398164..2398169) /regulatory_class="ribosome_binding_site" /gene="yfaV" /locus_tag="STM2290" /note="putative RBS for yfaV; RegulonDB:STMS1H002424" gene complement(2398213..2399430) /gene="yfaW" /locus_tag="STM2291" /db_xref="GeneID:1253813" CDS complement(2398213..2399430) /gene="yfaW" /locus_tag="STM2291" /note="similar to E. coli putative racemase (AAC75307.1); Blastp hit to AAC75307.1 (405 aa), 96% identity in aa 1 - 405" /codon_start=1 /transl_table=11 /product="putative galactonate dehydratase" /protein_id="NP_461233.1" /db_xref="GI:16765618" /db_xref="GeneID:1253813" /translation="MENIMTLPKIKHVRAWFIGGATAEKGAGGGDYHDQGGNHWIDDH IATPMSKYRDYEQSRQSFGINVLGTLIVEVEAENRQTGFAVSTAGEMGCFIVEKHLNR FIEGKCVSDIKLIHDQMLGATMYYSGSGGLVMNTISCVDLALWDLFGKVVGLPVYKLL GGAVRDEIQFYATGARPDLAKEMGFIGGKMPTHWGPHDGDAGIRKDAAMVADMREKCG PDFWLMLDCWMSQDVNYATKLAHACAPFNLKWIEECLPPQQYEGYRELKRNAPAGMMV TSGEHHGTLQSFRTLAETGIDIMQPDVGWCGGLTTLVEIAALAKSRGQLVVPHGSSVY SHHAVITFTNTPFSEFLMTSPDCSTLRPQFDPILLDEPVPVNGRIHKSVLDKPGFGVE LNRDCHLKRPYSH" gene complement(2399432..2400226) /gene="yfaX" /locus_tag="STM2292" /db_xref="GeneID:1253814" CDS complement(2399432..2400214) /gene="yfaX" /locus_tag="STM2292" /note="similar to E. coli putative regulator (AAC75308.1); Blastp hit to AAC75308.1 (260 aa), 87% identity in aa 1 - 260" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="NP_461234.1" /db_xref="GI:16765619" /db_xref="GeneID:1253814" /translation="MLESSKVPALTRAIDILNLIARIGPCSAAIIIETLRIPKSTAYL LLNELKRQRFISLDHQDNYCLWTKLVELSGHALSKMDLRELARPRLTQLMDETGLLCH LGIIDHENAYYILKVESSSTISVRSHEGKSLSLYRSGIGKCLLAWQPAAVRKAIIEQL VWERATLTTITEPQQLNDELERIRQRGWSFDNGEDYPDVRCVAAPVFNARNELTAAIS VVGTRLQINEENLDYLAGKAIACAKDISRLLGWKSPFDSLAS" regulatory complement(2400221..2400226) /regulatory_class="ribosome_binding_site" /gene="yfaX" /locus_tag="STM2292" /note="putative RBS for yfaX; RegulonDB:STMS1H002425" gene complement(2400464..2401672) /locus_tag="STM2293" /db_xref="GeneID:1253815" CDS complement(2400464..2401660) /locus_tag="STM2293" /note="similar to E. coli orf, hypothetical protein (AAC75309.1); Blastp hit to AAC75309.1 (400 aa), 88% identity in aa 1 - 397" /codon_start=1 /transl_table=11 /product="competence/damage-inducible protein A" /protein_id="NP_461235.1" /db_xref="GI:16765620" /db_xref="GeneID:1253815" /translation="MLNVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGVPLSRRNTVG DNLDSLVAILRERSQHADVLIVNGGLGPTSDDLSALAAATAKGEGLVLHQAWLTEMER YFQQRGRVMAPSNRKQAELPASAEFINNPLGTACGFALQLNRCLMFFTPGVPSEFKVM VEKEILPRLRARFSLPEPPLCLRLTTFGRSESDLAQRLDSLPLPPGVTMGYRSSMPII ELKLTGPATQREAMLALWPEVKRVAGQNLIFEGTENLPAQIARRLQERQLSLTLSEQY TSGLLALQLSRAGAPVLASEVVPSQEETLAQTAHWTTERRSNHYAGLALAVSGLENEH LNFALATPDGTYALRVRFSANRYSLAIRQEVCAMMALNMLRRWLNGEDITSEHGWIDV VESLTS" regulatory complement(2401667..2401672) /regulatory_class="ribosome_binding_site" /locus_tag="STM2293" /note="putative RBS for STM2293; RegulonDB:STMS1H002426" gene complement(2401775..2402422) /gene="yfaZ" /locus_tag="STM2294" /db_xref="GeneID:1253816" CDS complement(2401775..2402422) /gene="yfaZ" /locus_tag="STM2294" /note="similar to E. coli orf, hypothetical protein (AAC75310.1); Blastp hit to AAC75310.1 (187 aa), 86% identity in aa 8 - 187" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461236.1" /db_xref="GI:16765621" /db_xref="GeneID:1253816" /translation="MFLEWFLSALIPQRLAVQFCRFGEFFFMCLLERVKMKKSILLGF AGMLFVSASAQAISISGQAGEDYTNIGVGFGTESTGLALSGNWMHNDDDGDAAGVGLG LNIPVGPLLATVGGKGIYTNPKDSDEGYAAAVGGGLQWKIGNSFRLFGEYYYSPDSLS SGIDSYEEANAGARFTIMRPLSIEAGYRYLNLAGKDGNRDNAIADGPYVGVNASF" gene 2402583..2403021 /gene="yfaO" /locus_tag="STM2295" /db_xref="GeneID:1253817" regulatory 2402583..2402588 /regulatory_class="ribosome_binding_site" /gene="yfaO" /locus_tag="STM2295" /note="putative RBS for yfaO; RegulonDB:STMS1H002427" CDS 2402596..2403021 /gene="yfaO" /locus_tag="STM2295" /note="similar to E. coli orf, hypothetical protein (AAC75311.1); Blastp hit to AAC75311.1 (141 aa), 87% identity in aa 1 - 141" /codon_start=1 /transl_table=11 /product="nucleoside triphosphatase" /protein_id="NP_461237.1" /db_xref="GI:16765622" /db_xref="GeneID:1253817" /translation="MRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGE RIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSAN RDICINDEFQDYAWVKPEELALYDLNVATRHTLALKGLL" gene complement(2403066..2403680) /gene="ais" /locus_tag="STM2296" /db_xref="GeneID:1253818" CDS complement(2403066..2403671) /gene="ais" /locus_tag="STM2296" /note="similar to E. coli protein induced by aluminum (AAC75312.1); Blastp hit to AAC75312.1 (200 aa), 68% identity in aa 1 - 198" /codon_start=1 /transl_table=11 /product="histidine phosphatase family protein" /protein_id="NP_461238.1" /db_xref="GI:16765623" /db_xref="GeneID:1253818" /translation="MLAFTLRFIKNKRYFAILAGALVIIAGLTSQHAWSGNGLPQING KALAALAKQHPVVVLFRHAERCDRSDNTCLSDSTGITVKGAQDARALGKAFSADIQNY NLYSSNTVRTIQSATWFSAGRSLTVDKKMMDCGSGIYASINTLLKKSQNKNIVIFTHN HCLTYIAKNKRGVKFDPDYLNALVMHAENGKLFLDGEFVPG" regulatory complement(2403675..2403680) /regulatory_class="ribosome_binding_site" /gene="ais" /locus_tag="STM2296" /note="putative RBS for ais; RegulonDB:STMS1H002428" gene 2403942..2405109 /gene="yfbE" /locus_tag="STM2297" /db_xref="GeneID:1253819" regulatory 2403942..2403947 /regulatory_class="ribosome_binding_site" /gene="yfbE" /locus_tag="STM2297" /note="putative RBS for yfbE; RegulonDB:STMS1H002429" CDS 2403952..2405109 /gene="yfbE" /locus_tag="STM2297" /note="similar to E. coli putative enzyme (AAC75313.1); Blastp hit to AAC75313.1 (390 aa), 82% identity in aa 6 - 390" /codon_start=1 /transl_table=11 /product="putative DegT/DnrJ/EryC1/StrS family" /protein_id="NP_461239.3" /db_xref="GI:1109557684" /db_xref="GeneID:1253819" /translation="MAEGKMMSDFLPFSRPAMGAEELAAVKTVLDSGWITTGPKNQEL EAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGAN PVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIED AAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLG VDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQA MADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAH TQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQ" gene 2405099..2406095 /gene="pmrF" /locus_tag="STM2298" /db_xref="GeneID:1253820" regulatory 2405099..2405104 /regulatory_class="ribosome_binding_site" /gene="pmrF" /locus_tag="STM2298" /note="putative RBS for pmrF; RegulonDB:STMS1H002430" CDS 2405112..2406095 /gene="pmrF" /locus_tag="STM2298" /note="similar to E. coli putative sugar transferase (AAC75314.1); Blastp hit to AAC75314.1 (322 aa), 87% identity in aa 1 - 318" /codon_start=1 /transl_table=11 /product="undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase" /protein_id="NP_461240.1" /db_xref="GI:16765625" /db_xref="GeneID:1253820" /translation="MFDAAPIKKVSVVIPVYNEQESLPELIRRTTTACESLGKAWEIL LIDDGSSDSSAELMVKASQEADSHIISILLNRNYGQHAAIMAGFSHVSGDLIITLDAD LQNPPEEIPRLVAKADEGFDVVGTVRQNRQDSLFRKSASKIINLLIQRTTGKAMGDYG CMLRAYRRPIIDTMLRCHERSTFIPILANIFARRATEIPVHHAEREFGDSKYSFMRLI NLMYDLVTCLTTTPLRLLSLLGSVIAIGGFSLSVLLIVLRLALGPQWAAEGVFMLFAV LFTFIGAQFIGMGLLGEYIGRIYNDVRARPRYFVQQVIYPESTPFTEESHQ" gene 2406078..2408074 /gene="yfbG" /locus_tag="STM2299" /db_xref="GeneID:1253821" regulatory 2406078..2406083 /regulatory_class="ribosome_binding_site" /gene="pmrF" /locus_tag="STM2298" /note="putative RBS for yfbG; RegulonDB:STMS1H002431" CDS 2406092..2408074 /gene="yfbG" /locus_tag="STM2299" /note="hypothetical 73.6 Kda protein in ais-pmrD intergenic region. (SW:YFBG_SALTY)" /codon_start=1 /transl_table=11 /product="bifunctional UDP-glucuronic acid oxidase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase" /protein_id="NP_461241.1" /db_xref="GI:16765626" /db_xref="GeneID:1253821" /translation="MKAVIFAYHDMGCQGVQAVLDAGYEIAAIFTHADNPAENTFFGS VSRQAAELGIPVYAPDNVNHPIWVDRIAELAPDIIFSFYYRNLLSEEILHLAPAGAFN LHGSLLPAYRGRAPLNWVLVNGESETGVTLHRMVKRADAGEIVASQRVAIAQDDVALT LHHKLCQAARQLLNSILPTMKCGDIPSVPQRESDSTYYGRRRPEDGLIDWHKPVSTVH NLVRAVAAPWPGAFSYNGSQKFTIWSSRMCPDAQGALPGSVISVSPLRVACADGALEI ITGQAGDDITVQGSQLAQTLGLVAGARLNRPPATSGKRRIRVLILGVNGFIGNHLTER LLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI ATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSN LIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGS SRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIG NPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESRSYYGKGYQDVAHRKPSID NARRCLGWEPSIAMRDTVEETLDFFLRSVDIAERAS" gene 2408057..2408970 /locus_tag="STM2300" /db_xref="GeneID:1253822" regulatory 2408057..2408062 /regulatory_class="ribosome_binding_site" /locus_tag="STM2300" /note="putative RBS for STM2300; RegulonDB:STMS1H002432" CDS 2408071..2408970 /locus_tag="STM2300" /note="similar to E. coli orf, hypothetical protein (AAC75316.1); Blastp hit to AAC75316.1 (296 aa), 73% identity in aa 1 - 295" /codon_start=1 /transl_table=11 /product="4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase" /protein_id="NP_461242.1" /db_xref="GI:16765627" /db_xref="GeneID:1253822" /translation="MTKVGLRIDVDTLRGTREGVPRLLATLHRHGVQASFFFSVGPDN MGRHLWRLIKPRFLWKMLRSNAASLYGWDILLAGTAWPGKNIGNANAGIIRETATYHE TGLHAWDHHAWQTHSGHWSIRQLEEDIARGITALEAIIGKPVTCSAAAGWRADGRVVR AKESFNLRYNSDCRGTTLFRPLLMPGQTGTPQIPVTLPTWDEVIGPAVQAQSFNTWII SRMLQDKGTPVYTIHAEVEGIVHQPLFEDLLVRARDAGITFCPLGELLPASPESLPLG QIVRGHIPGREGWLGCQQAASAS" gene 2408950..2410613 /gene="pqaB" /locus_tag="STM2301" /db_xref="GeneID:1253823" regulatory 2408950..2408955 /regulatory_class="ribosome_binding_site" /locus_tag="STM2300" /note="putative RBS for pqaB; RegulonDB:STMS1H002433" CDS 2408967..2410613 /gene="pqaB" /locus_tag="STM2301" /note="PqaB; affects polymycin B resistance and lipopolysaccharide synthesis; similar to E. coli orf, hypothetical protein (AAC75317.1); Blastp hit to AAC75317.1 (550 aa), 71% identity in aa 1 - 550" /codon_start=1 /transl_table=11 /product="4-amino-4-deoxy-L-arabinose lipid A transferase" /protein_id="NP_461243.1" /db_xref="GI:16765628" /db_xref="GeneID:1253823" /translation="MMKSIRYYLAFAAFIALYYVIPVNSRLLWQPDETRYAEISREML ASGDWIVPHFLGLRYFEKPIAGYWINSLGQWLFGATNFGVRAGAILTTLLAAALVAWL TFRLWRDKRTALLASVIFLSLFAVYSIGTYAVLDPMIALWLTAGMCCFWQGMQATTRM GKIGMFLLLGATCGLGVLTKGFLALAVPVVSVLPWVIVQKRWKDFLLYGWLAVLSCFV VVLPWAIAIARREADFWHYFFWVEHIQRFAMSDAQHKAPFWYYLPVLLAGSLPWLGLL PGALKLGWRERNGAFYLLGWTIMPLLFFSIAKGKLPTYVLSCFAPIAILMARFVLHNV KEGVAALRVNGGINLVFGLVGIVAAFVVSSWGPLKSPVWTHIETYKVFCVWGVFTVWA FVGWYSLCHSQKYLLPAFCPLGLALLFGFSIPDRVMESKQPQFFVEMTQAPLASSRYI LADNVGVAAGLAWSLKRDDIMLYGHAGELRYGLSYPDVQDKFVKADDFNAWLNQHRQE GIITLVLSIAKDEDISALSLPPADNIDYQGRLVLIQYRPK" gene 2410610..2410945 /locus_tag="STM2302" /db_xref="GeneID:1253824" CDS 2410610..2410945 /locus_tag="STM2302" /note="unknown (gi|2921424)" /codon_start=1 /transl_table=11 /product="4-amino-4-deoxy-L-arabinose-phospho-UDP flippase" /protein_id="NP_461244.1" /db_xref="GI:16765629" /db_xref="GeneID:1253824" /translation="MIGVVLVLASLLSVGGQLCQKQATRPLTAGGRRRHLMLWLGLAL ICMGAAMVLWLLVLQTLPVGIAYPMLSLNFVWVTLAAWKIWHEQVPPRHWLGVALIIS GIIILGSAA" gene 2410928..2411322 /locus_tag="STM2303" /db_xref="GeneID:1253825" regulatory 2410928..2410933 /regulatory_class="ribosome_binding_site" /locus_tag="STM2302" /note="putative RBS for STM2303; RegulonDB:STMS1H002434" CDS 2410945..2411322 /locus_tag="STM2303" /note="similar to E. coli putative transport/receptor protein (AAC75318.1); Blastp hit to AAC75318.1 (222 aa), 68% identity in aa 95 - 216" /codon_start=1 /transl_table=11 /product="4-amino-4-deoxy-L-arabinose-phospho-UDP flippase" /protein_id="NP_461245.1" /db_xref="GI:16765630" /db_xref="GeneID:1253825" /translation="MGVMWGLISVAIASLAQLSLGFAMMRLPSIAHPLAFISGLGAFN AATLALFAGLAGYLVSVFCWQKTLHTLALSKAYALLSLSYVLVWVASMLLPGLQGAFS LKAMLGVLCIMAGVMLIFLPARS" gene complement(2411317..2411585) /gene="pmrD" /locus_tag="STM2304" /db_xref="GeneID:1253826" CDS complement(2411317..2411574) /gene="pmrD" /locus_tag="STM2304" /note="polymyxin b resistance protein PMRD. (SW:PMRD_SALTY)" /codon_start=1 /transl_table=11 /product="signal transduction protein PmrD" /protein_id="NP_461246.1" /db_xref="GI:16765631" /db_xref="GeneID:1253826" /translation="MEWLVKKSHYVKKRACHVLVLCDSGGSLKMIAEANSMILLSPGD ILSPLQDAQYCINREKHQTLKIVDARCYSCDEWQRLTRKPS" regulatory complement(2411580..2411585) /regulatory_class="ribosome_binding_site" /gene="pmrD" /locus_tag="STM2304" /note="putative RBS for pmrD; RegulonDB:STMS1H002435" gene complement(2411672..2413059) /gene="menE" /locus_tag="STM2305" /db_xref="GeneID:1253827" CDS complement(2411672..2413039) /gene="menE" /locus_tag="STM2305" /EC_number="6.2.1.26" /note="O-succinylbenzoic acid--coA ligase. (SW:MENE_SALTY)" /codon_start=1 /transl_table=11 /product="o-succinylbenzoate--CoA ligase" /protein_id="NP_461247.1" /db_xref="GI:16765632" /db_xref="GeneID:1253827" /translation="MTFTDWPWRHWRQVRSQAPALRLNDEVLSWRALCERIDVLAGGF AAQGVREGDGVLLRAGNQPRTLLAWLALMQCGARVLPVNPQLPQTLLEALVPKLTLRF ALTLEGENAFSGLTALQIQKSTAAYAVAWQPQRLVSMTLTSGSTGLPKAAVHTCQAHL ASAQGVLSLMPFGPQDDWLLSLPLFHVSGQGIMWRWLFAGARMTVRDKQPLEQMLAGC THASLVPTQLWRLLANRAAVTLKAVLLGGAVIPVELTDQASKQGIRCWCGYGLTEFAS TVCAKEADGSDDVGAPLPGREIRIVDNEVWLRAASMAEGYWRDGKLIPLVNDEGWFAT RDRGELNHGRLTIAGRLDNLFFSGGEGIQPEEVERVINAHPLVQQAFVVPVEDKEFGH RPVAVVEYASQAGDVNLAEWVRDKLARFQQPVRWLTMPSELKNGGIKISRRALQQWVC ENCKN" gene complement(2413036..2414010) /gene="menC" /locus_tag="STM2306" /db_xref="GeneID:1253828" CDS complement(2413036..2413998) /gene="menC" /locus_tag="STM2306" /EC_number="4.2.1.-" /note="similar to E. coli o-succinylbenzoyl-CoA synthase; conversion of chorismate to 2-o-succinylbenzoyl-CoA (AAC75321.1); Blastp hit to AAC75321.1 (320 aa), 88% identity in aa 1 - 320" /codon_start=1 /transl_table=11 /product="o-succinylbenzoate synthase" /protein_id="NP_461248.1" /db_xref="GI:16765633" /db_xref="GeneID:1253828" /translation="MRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLRDGEREGWGE ISPLPGFSQETWEEAQTALLTWVNDWLQGSEGLPEMPSVAFGASCALAELTGVLPEAA DYRAAPLCTGDPDDLVLRLADMPGEKIAKVKVGLYEAVRDGMVVNLLLEAIPDLHLRL DANRAWTPLKAQQFAKYVNPDYRARIAFLEEPCKTRDDSRAFARETGIAIAWDESLRE ADFTFEAEEGVRAVVIKPTLTGSLDKVREQVAAAHALGLTAVISSSIESSLGLTQLAR IAAWLTPGTLPGLDTLHLMQAQQIRPWPGSALPCLKREELERLL" regulatory complement(2413054..2413059) /regulatory_class="ribosome_binding_site" /gene="menC" /locus_tag="STM2306" /note="putative RBS for menE; RegulonDB:STMS1H002436" gene complement(2413998..2414866) /gene="menB" /locus_tag="STM2307" /db_xref="GeneID:1253829" CDS complement(2413998..2414855) /gene="menB" /locus_tag="STM2307" /EC_number="4.1.3.36" /note="similar to E. coli dihydroxynaphtoic acid synthetase (AAC75322.1); Blastp hit to AAC75322.1 (285 aa), 96% identity in aa 1 - 285" /codon_start=1 /transl_table=11 /product="1,4-dihydroxy-2-naphthoyl-CoA synthase" /protein_id="NP_461249.1" /db_xref="GI:16765634" /db_xref="GeneID:1253829" /translation="MIYPDETMLYAPVEWHDCSEGYTDIRYEKSTDGIAKITINRPQV RNAFRPLTVKEMIQALADARYDDNVGVIILTGEGDKAFCAGGDQKVRGDYGGYQDDSG VHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAAENAIFGQTGPKVG SFDGGWGASYMARIVGQKKAREIWFLCRQYDAQQALDMGLVNTVVPLADLEKETVRWC REMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQP DFSKFKRNP" regulatory complement(2414005..2414010) /regulatory_class="ribosome_binding_site" /gene="menB" /locus_tag="STM2307" /note="putative RBS for menC; RegulonDB:STMS1H002437" regulatory complement(2414861..2414866) /regulatory_class="ribosome_binding_site" /gene="menB" /locus_tag="STM2307" /note="putative RBS for menB; RegulonDB:STMS1H002438" gene complement(2414870..2415642) /gene="yfbB" /locus_tag="STM2308" /db_xref="GeneID:1253830" CDS complement(2414870..2415628) /gene="yfbB" /locus_tag="STM2308" /note="similar to E. coli putative enzyme (AAC75323.1); Blastp hit to AAC75323.1 (252 aa), 76% identity in aa 1 - 251" /codon_start=1 /transl_table=11 /product="2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase" /protein_id="NP_461250.1" /db_xref="GI:16765635" /db_xref="GeneID:1253830" /translation="MMLHAQHMPGQPGTPSLVFLHGFSGDCHEWQPVGEQFHGCSRLY IDLPGHGGSAAIPVDGFADVIRLLRATLISYNILKFWLVGYSLGGRVAMMAACQGIPG LCGLVVEGGHPGLQNEQARAERRLSDGRWAERFRHEPLTEVFHDWYQQPVFASLTAQQ RQALTALRSQNNGETLAAMLEATSLAVQPDLREALNALAFPFYYLCGERDSKFRALAQ EVAATCHVIRNAGHNAHRENPAGVVDSLAQILRL" gene complement(2415625..2417307) /gene="menD" /locus_tag="STM2309" /db_xref="GeneID:1253831" CDS complement(2415625..2417295) /gene="menD" /locus_tag="STM2309" /EC_number="4.1.3.-" /note="bifunctional; similar to E. coli 2-oxoglutarate decarboxylase; SHCHC synthase (AAC75324.1); Blastp hit to AAC75324.1 (556 aa), 91% identity in aa 1 - 556" /codon_start=1 /transl_table=11 /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase" /protein_id="NP_461251.1" /db_xref="GI:16765636" /db_xref="GeneID:1253831" /translation="MSVSAFNRRWAAVILEALTRHGVRHVCIAPGSRSTPLTLAAAEN PAFIHHTHFDERGLGHLALGLAKVSQQPVAVIVTSGTAVANLYPALIEAGLTGEKLIL LTADRPPELIDCGANQAIRQAGMFASHPSQTLSLPRPTQDIPARWLVSTIDNALAMLH AGALHINCPFAEPLYGDMNDTGLVWQQRLGDWWQDEKPWLREARRLESDKQRDWFFWR QKRGVVVAGRMSAEEGKKVAQWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKAVTEL QQAQIVVQLGSSLTGKRLLQWQATCEPEEYWVIDNIEGRLDPAHHRGRRLVAKIADWL ELHPAEKRKPWCVEIPRLAELAWQRVVAQRDTFGEAQLAHRIRDYLPEQGQLFVGNSL VVRLIDALSQLPAGYPVYSNRGASGIDGLLSTAAGVQRASAKSTLAIVGDLSALYDLN ALALLRQVSAPFVLIVVNNNGGQIFSLLPTPQSKRERFYLMPQNVHFDHAAAMFNLRY HRPENWEELESALAGAWRTPATTVIELVVNDTDGAQTLQQLLAQVSHL" regulatory complement(2415637..2415642) /regulatory_class="ribosome_binding_site" /gene="yfbB" /locus_tag="STM2308" /note="putative RBS for yfbB; RegulonDB:STMS1H002439" regulatory complement(2417302..2417307) /regulatory_class="ribosome_binding_site" /gene="menD" /locus_tag="STM2309" /note="putative RBS for menD; RegulonDB:STMS1H002440" gene complement(2417381..2418690) /gene="menF" /locus_tag="STM2310" /db_xref="GeneID:1253832" CDS complement(2417381..2418676) /gene="menF" /locus_tag="STM2310" /EC_number="5.4.4.2" /note="menaquinone biosynthesis; similar to E. coli isochorismate hydroxymutase 2, menaquinone biosynthesis (AAC75325.1); Blastp hit to AAC75325.1 (356 aa), 78% identity in aa 1 - 356" /codon_start=1 /transl_table=11 /product="isochorismate synthase MenF" /protein_id="NP_461252.1" /db_xref="GI:16765637" /db_xref="GeneID:1253832" /translation="MHSITTALENLTRQLSQEIPATPGLCVFDAPFPLNDAFDALSWL ASQSSFPQFYWQQRNGDEEAAVLGAITVFSSLDLAQRFLRQHAQPDLRIWGLNAFEPK EGYLLLPRLEWRRSGGTATLRLHLHSDVSLRDDARQAKAFLASLVGIKPVPALRLSLT SEQHWPDKDGWVKLIQQATHTIAQEAFDKVVLARATDLQFSRPVNAAAMMASSRRLNL NCYHFFMAFSADTAFLGSSPERLWRRRETALRTEALAGTVANHPDNHKAWQLGEWLMK DDKNQRENMLVVEDICQRLQNCTHSLDVLPPQVLRLRKVQHLRRCIWTALNQADDTLC LHQLQPTAAVAGIPREPARCFIEQHEPFEREWYAGSAGYLSTRQSEFCVTLRSAKVTA NVVRLYAGAGIVRGSDPEQEWQEIDNKAAGLRTLLQMDA" regulatory complement(2418685..2418690) /regulatory_class="ribosome_binding_site" /gene="menF" /locus_tag="STM2310" /note="putative RBS for menF; RegulonDB:STMS1H002441" gene complement(2418777..2419095) /gene="elaB" /locus_tag="STM2311" /db_xref="GeneID:1253833" CDS complement(2418777..2419088) /gene="elaB" /locus_tag="STM2311" /note="similar to E. coli orf, hypothetical protein (AAC75326.1); Blastp hit to AAC75326.1 (101 aa), 89% identity in aa 1 - 101" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461253.3" /db_xref="GI:1109557685" /db_xref="GeneID:1253833" /translation="MRMSYQFGESRVDDDLTLLSETLEEVLRSSGDPADQKYIELKAR AEQALEEVKNRVSHASDSYYYRAKQAVYKADDYVHEKPWQGIGVGAAVGLVLGLLLAR R" regulatory complement(2419090..2419095) /regulatory_class="ribosome_binding_site" /gene="elaB" /locus_tag="STM2311" /note="putative RBS for elaB; RegulonDB:STMS1H002442" gene complement(2419137..2419610) /gene="elaA" /locus_tag="STM2312" /db_xref="GeneID:1253834" CDS complement(2419137..2419598) /gene="elaA" /locus_tag="STM2312" /note="similar to E. coli orf, hypothetical protein (AAC75327.1); Blastp hit to AAC75327.1 (153 aa), 80% identity in aa 1 - 153" /codon_start=1 /transl_table=11 /product="GNAT family N-acetyltransferase" /protein_id="NP_461254.1" /db_xref="GI:16765639" /db_xref="GeneID:1253834" /translation="MIDWQDLHHSELTVPQLYALLKLRCAVFVVEQRCPYLDVDGDDL VGDNRHILGWHQDELVAYARILKSDNESDPVVIGRVIVSDAWRGAKLGQQLMAKTLES CGRHWPDKPLYLGAQAHLQPFYARFGFIPVTDVYDEDGIPHRGMAREVHQA" regulatory complement(2419605..2419610) /regulatory_class="ribosome_binding_site" /gene="elaA" /locus_tag="STM2312" /note="putative RBS for elaA; RegulonDB:STMS1H002443" gene 2419650..2420576 /gene="elaC" /locus_tag="STM2313" /db_xref="GeneID:1253835" regulatory 2419650..2419655 /regulatory_class="ribosome_binding_site" /gene="elaC" /locus_tag="STM2313" /note="putative RBS for elaC; RegulonDB:STMS1H002444" CDS 2419659..2420576 /gene="elaC" /locus_tag="STM2313" /note="similar to E. coli orf, hypothetical protein (AAC75328.1); Blastp hit to AAC75328.1 (311 aa), 80% identity in aa 7 - 311" /codon_start=1 /transl_table=11 /product="ribonuclease Z" /protein_id="NP_461255.1" /db_xref="GI:16765640" /db_xref="GeneID:1253835" /translation="MELIFLGTSAGVPTRSRNVTAILLHLQHPTQPGVWLFDCGEGTQ HQMLNTAFHPGKLERIFISHLHGDHLFGLPGLLCSRSMAGNPHPLTVYGPQGVREFIA TTLRLSGSWTDFPLQIEEISAGDILDDGLRKVTAFRLEHPLECYGYRVVEHDKPGALN ARALKAAGVTPGPLFQALKAGKTVTLADGRQINGADYLAPAVAGKSVAIFGDTAPCEA ALALAQGVDVMVHETTLDASMEEKANARGHSSTRQTATLAREAAVGRLIMTHISSRYD DKGCQRLLAECRAIFPATELAYDFSVFPV" gene 2420636..2421643 /locus_tag="STM2314" /db_xref="GeneID:1253836" regulatory 2420636..2420641 /regulatory_class="ribosome_binding_site" /locus_tag="STM2314" /note="putative RBS for STM2314; RegulonDB:STMS1H002445" CDS 2420642..2421643 /locus_tag="STM2314" /EC_number="2.7.3.-" /note="similar to E. coli positive regulator of CheA protein activity (AAC74957.1); Blastp hit to AAC74957.1 (167 aa), 25% identity in aa 18 - 151" /codon_start=1 /transl_table=11 /product="chemotaxis protein CheV" /protein_id="NP_461256.1" /db_xref="GI:16765641" /db_xref="GeneID:1253836" /translation="MDNFQKDIDDRANLTLSNRFELLLFRLGTSLHEQKSELFGINVF KLREIVPMPAFTRPAGMKAPLLGMVNIRDQVIPVIDLPAVAGCKPETGLNILLITEYA RSVQAFAVESVENIMRLDWQQVHTAEKAVNGRYITSIACLDDNKETNNLALVLDVEQI LYDIVPSSHDLRATNLKTNKFYITPGAVAIVAEDSKVARAMLEKGLNAMGIPHQMHVT GKDAWERIQQLAQEAEAEGKPISEKIALVLTDLEMPEMDGFTLTRKIKTDERLKKIPV VIHSSLSGSANEDHIRKVKADGYVAKFEINELSSVIQEVLERAATNSQGPLISRKSA" gene complement(2421684..2423476) /gene="yfbK" /locus_tag="STM2315" /db_xref="GeneID:1253837" CDS complement(2421684..2423465) /gene="yfbK" /locus_tag="STM2315" /note="similar to E. coli orf, hypothetical protein (AAC75330.1); Blastp hit to AAC75330.1 (575 aa), 45% identity in aa 22 - 190" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461257.1" /db_xref="GI:16765642" /db_xref="GeneID:1253837" /translation="MLNGKTLMLLLGGVILSGCGPEPSDPQGNNPAELKQKRTIQKEN SAQAGDDTVQKRQAEAAQQAAKKAAEYAEAKALADAKAASLATAEAPQYVMQTRAAAP KAFAAQGGNVMGTARYEHYDENPIKQVSQAPLATFSLDVDTGSYANVRRFLNQGQLPP PEAVRVEEMLNYFPAPQPVADKQDNTKPIAACIPMPFAVKYELAPSPWNAQRTLLKVD VQARDMQTRDLPPANLVFLIDTSGSMQPAERLPLIRSALKLLVNDLRAQDNITIVTYA GGTHVALASTAGNNTTAIKAAIDNLDAYGSTGGEAGLRLAYEQAEKGFIKGGVNRILL TTDGDFNLGITDPKDIEALVKKEREKGITLSTLGVGDDNFNEAMMVRIADVGNGNYSY IDSLSEAQKVLKDEMHQTLVTVAKDVKSQIEFNPQWVTEYRQIGYEKRQLRDEDFNND KVDAGDIGAGKHVTLFFELTLNGQKASVDKLRYAQNKAASKTTKSSELAWLKLRWKAP QGSESTLAEFPVVMGKMPIFADASEDFRFRAAVAAFGQKLRGSETLADTTWPQIIKWG EQARGEDRQGYRAEFIKLVKLAEGLSH" regulatory complement(2423471..2423476) /regulatory_class="ribosome_binding_site" /gene="yfbK" /locus_tag="STM2315" /note="putative RBS for yfbK; RegulonDB:STMS1H002446" gene complement(2424353..2425638) /gene="nuoN" /locus_tag="STM2316" /db_xref="GeneID:1253838" CDS complement(2424353..2425630) /gene="nuoN" /locus_tag="STM2316" /EC_number="1.6.5.3" /note="similar to E. coli NADH dehydrogenase I chain N (AAC75336.1); Blastp hit to AAC75336.1 (425 aa), 95% identity in aa 1 - 425" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain N" /protein_id="NP_461258.3" /db_xref="GI:1109557686" /db_xref="GeneID:1253838" /translation="MDVTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNQEE FYLLVLIASLGGILLANANHLAALFLGIELISLPLFGLIGYAFRQKRSLEASIKYTIL SAAASSFLLFGMALVYAQSGNLSFEALGKSLGDGMLHEPLLLAGFGLMIVGLGFKLSL VPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGDSEAVRVVLGIIAF ASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQSGEMSMEAVGVYLAGYLFS SLGAFGVVSLMSSPFRGPDADSLYSYRGLFWHRPVLAAVMTVMMLSLAGIPMTLGFIG KFYVLAVGVQASLWWLVAAVVVGSAIGLYYYLRVAVSLYLHAPQQPGRDAPTNWQYSA GGIVVLISALLVLVLGVWPQPLISLVQLAMPLM" regulatory complement(2425633..2425638) /regulatory_class="ribosome_binding_site" /gene="nuoN" /locus_tag="STM2316" /note="putative RBS for nuoN; RegulonDB:STMS1H002447" gene complement(2425817..2427363) /gene="nuoM" /locus_tag="STM2317" /db_xref="GeneID:1253839" CDS complement(2425817..2427346) /gene="nuoM" /locus_tag="STM2317" /EC_number="1.6.5.3" /note="similar to E. coli NADH dehydrogenase I chain M (AAC75337.1); Blastp hit to AAC75337.1 (509 aa), 96% identity in aa 1 - 509" /codon_start=1 /transl_table=11 /product="NADH-quinone oxidoreductase subunit M" /protein_id="NP_461259.1" /db_xref="GI:16765644" /db_xref="GeneID:1253839" /translation="MLLPWLILIPFIGGFLCWQTERFGVKVPRWIALITMGLTLALGL QLWLQGGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLALDGLSLLMVVLTGLLGVLAV LCSWREIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHK ASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSHG VEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSL PLFPNASAEFAPIAMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGS QLAYQGAVIQMIAHGLSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFA VATLGMPGTGNFVGEFMILFGSYQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKS QIASVELPGMSLRELFIILLLVVLLVLLGFYPQPILDTSHSAMSNIQQWFVNSVTTTR P" regulatory complement(2427358..2427363) /regulatory_class="ribosome_binding_site" /gene="nuoM" /locus_tag="STM2317" /note="putative RBS for nuoM; RegulonDB:STMS1H002448" gene complement(2427660..2429512) /gene="nuoL" /locus_tag="STM2318" /db_xref="GeneID:1253840" CDS complement(2427660..2429501) /gene="nuoL" /locus_tag="STM2318" /EC_number="1.6.5.3" /note="similar to E. coli NADH dehydrogenase I chain L (AAC75338.1); Blastp hit to AAC75338.1 (613 aa), 94% identity in aa 1 - 613" /codon_start=1 /transl_table=11 /product="NADH-quinone oxidoreductase subunit L" /protein_id="NP_461260.1" /db_xref="GI:16765645" /db_xref="GeneID:1253840" /translation="MNMLALTIILPLIGFVLLAFSRGRWSENLSATIGVGSVGLAALV TAFVGMDFFANGKQAFSQPLWTWMSVGNFNIGFNLVLDGLSLTMLSVVTGVGFLIHMF ASWYMRGEEGYSRFFAYTNLFIASMVVLVLSDNLLLMYLGWEGVGLCSYLLIGFYYSD PKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWA TLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMT PEILHLVGIIGAITLVMAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFH LMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYACFLVGGAALSALPLV TAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIHAHAGKG ITHHLPLIVLMILSTFVGALIVPPLQGVLPQTTELAHGRVMTLEITSGVVAIAGILIA AWLWLGKRTLVTSIANSAPGRLLGTWWYNAWGFDWLYDKVFVKPFLGIAWLLKRDPLN ALMNIPAILSRFAGKGLVLSENGYLRWYVASMSIGAVVVLALLMVLR" gene complement(2429498..2429811) /gene="nuoK" /locus_tag="STM2319" /db_xref="GeneID:1253841" CDS complement(2429498..2429800) /gene="nuoK" /locus_tag="STM2319" /EC_number="1.6.5.3" /note="similar to E. coli NADH dehydrogenase I chain K (AAC75339.1); Blastp hit to AAC75339.1 (100 aa), 99% identity in aa 1 - 100" /codon_start=1 /transl_table=11 /product="NADH-quinone oxidoreductase subunit K" /protein_id="NP_461261.1" /db_xref="GI:16765646" /db_xref="GeneID:1253841" /translation="MIPLTHGLILAAILFVLGLTGLVIRRNLLFMLIGLEIMINASAL AFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG" regulatory complement(2429507..2429512) /regulatory_class="ribosome_binding_site" /gene="nuoK" /locus_tag="STM2319" /note="putative RBS for nuoL; RegulonDB:STMS1H002449" gene complement(2429797..2430363) /gene="nuoJ" /locus_tag="STM2320" /db_xref="GeneID:1253842" CDS complement(2429797..2430351) /gene="nuoJ" /locus_tag="STM2320" /EC_number="1.6.5.3" /note="similar to E. coli NADH dehydrogenase I chain J (AAC75340.1); Blastp hit to AAC75340.1 (184 aa), 96% identity in aa 1 - 184" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase subunit J" /protein_id="NP_461262.1" /db_xref="GI:16765647" /db_xref="GeneID:1253842" /translation="MEFAFYICGLIAILATLRVITHTNPVHALLYLVISLLAISGVFF SLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAVLSAI MLAVIVYAILGVNDQGIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR EERAGEVLSNRADDRAKRKTEERA" regulatory complement(2429806..2429811) /regulatory_class="ribosome_binding_site" /gene="nuoK" /locus_tag="STM2319" /note="putative RBS for nuoK; RegulonDB:STMS1H002450" regulatory complement(2430358..2430363) /regulatory_class="ribosome_binding_site" /gene="nuoJ" /locus_tag="STM2320" /note="putative RBS for nuoJ; RegulonDB:STMS1H002451" gene complement(2430362..2430920) /gene="nuoI" /locus_tag="STM2321" /db_xref="GeneID:1253843" CDS complement(2430362..2430904) /gene="nuoI" /locus_tag="STM2321" /EC_number="1.6.5.3" /note="similar to E. coli NADH dehydrogenase I chain I (AAC75341.1); Blastp hit to AAC75341.1 (180 aa), 99% identity in aa 1 - 180" /codon_start=1 /transl_table=11 /product="NADH-quinone oxidoreductase subunit I" /protein_id="NP_461263.1" /db_xref="GI:16765648" /db_xref="GeneID:1253843" /translation="MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRY RGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFC GLCEEACPTTAIQLTPDFELGEYKRQDLVYEKEDLLISGPGKYPEYNFYRMAGMAIDG KDKGEAENEAKPIDVKSLLP" regulatory complement(2430915..2430920) /regulatory_class="ribosome_binding_site" /gene="nuoI" /locus_tag="STM2321" /note="putative RBS for nuoI; RegulonDB:STMS1H002452" gene complement(2430919..2431907) /gene="nuoH" /locus_tag="STM2322" /db_xref="GeneID:1253844" CDS complement(2430919..2431896) /gene="nuoH" /locus_tag="STM2322" /EC_number="1.6.5.3" /note="nadh dehydrogenase I chain H. (SW:NUOH_SALTY)" /codon_start=1 /transl_table=11 /product="NADH-quinone oxidoreductase subunit H" /protein_id="NP_461264.1" /db_xref="GI:16765649" /db_xref="GeneID:1253844" /translation="MSWITPDLIEILLSILKAVVILLVVVTCGAFMSFGERRLLGLFQ NRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLSFAIVP VSPNWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTVSYEVFL GLSLMGVVAQAGSFNMTDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAE QELADGYHIEYSGMKFGLFFVGEYIGIVTVSALMVTLFFGGWHGPFLPPFVWFALKTA FFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLINLLVTAAVILWQAQ" gene complement(2431893..2434633) /gene="nuoG" /locus_tag="STM2323" /db_xref="GeneID:1253845" CDS complement(2431893..2434625) /gene="nuoG" /locus_tag="STM2323" /EC_number="1.6.5.3" /note="nadh dehydrogenase I chain G. (SW:NUOG_SALTY)" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain G" /protein_id="NP_461265.3" /db_xref="GI:1109557687" /db_xref="GeneID:1253845" /translation="MLMATIHVDGKEYEVNGADNLLQACLSLGLDIPYFCWHPALGSV GACRQCAVKQYQNAEDTRGRLVMSCMTPATDGTFISIDDEEAKQFRESVVEWLMTNHP HDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCV RYYKDYADGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEICPTGVFTDKTHSERYN RKWDMQFAPSICQQCSIGCNISPGERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVN LKDRPRQPVQRRGDDFITLNAEQAMQGAADILRQSKKVIGIGSPRASIESNFALRELV GAENFYTGIARGEQERLQLALKVLREGGIYTPALREIESYDAVLVLGEDVTQTGARVA LAVRQAVKGKAREMAAAQKVADWQIAAILNIGQRAKHPLFVTNVDDTRLDDIAAWTYR APVEDQARLGFAIAHALDNTAPAVDGIDSDLQNKIDVIVQALAGAKKPLIISGTNAGS SEVIQAAANVAKALKGRGADVGITMIARSVNSMGLGMMGGGSLDDALGELETGSADAV VVLENDLHRHASATRVNAALAKAPLVMVVDHQRTAIMENAHLVLSAASFAESDGTVIN NEGRAQRFFQVYDPAYYDNKTIMLESWRWLHSLHSTVENREVDWTQLDHVIDAVIAAM PQFAGIKDAAPDATFRIRGQKLAREPHRYSGRTAMRANISVHEPRQPQDKDTMFAFSM EGNNQPTAPRSEIPFAWAPGWNSPQAWNKFQDEVGGKLRHGDPGVRLIEATEGGLDYF TTVPASFQAQDGQWRIAPYYHLFGSDELSQRSPVFQSRMPQPYIKLNPADAAKLGVNA GTRVSFSYDGNTVTLPVEISEGLAAGQVGLPMGMPGIAPVLAGARLEDLREAQQ" regulatory complement(2431902..2431907) /regulatory_class="ribosome_binding_site" /gene="nuoH" /locus_tag="STM2322" /note="putative RBS for nuoH; RegulonDB:STMS1H002453" regulatory complement(2434628..2434633) /regulatory_class="ribosome_binding_site" /gene="nuoG" /locus_tag="STM2323" /note="putative RBS for nuoG; RegulonDB:STMS1H002454" gene complement(2434650..2436001) /gene="nuoF" /locus_tag="STM2324" /db_xref="GeneID:1253846" CDS complement(2434650..2435987) /gene="nuoF" /locus_tag="STM2324" /EC_number="1.6.5.3" /note="nadh dehydrogenase I chain F. (SW:NUOF_SALTY)" /codon_start=1 /transl_table=11 /product="NADH-quinone oxidoreductase subunit F" /protein_id="NP_461266.1" /db_xref="GI:16765651" /db_xref="GeneID:1253846" /translation="MKNVIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTG LSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDR LLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNI MGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNN VETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILED YAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAGSRLGTALAMAVDHEIG MVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLG PGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQPFSNTHLINGIQPNLLKERW" gene complement(2435984..2436498) /gene="nuoE" /locus_tag="STM2325" /db_xref="GeneID:1253847" CDS complement(2435984..2436484) /gene="nuoE" /locus_tag="STM2325" /EC_number="1.6.5.3" /note="nadh dehydrogenaseI i chain E. (SW:NUOE_SALTY)" /codon_start=1 /transl_table=11 /product="NADH-quinone oxidoreductase subunit E" /protein_id="NP_461267.1" /db_xref="GI:16765652" /db_xref="GeneID:1253847" /translation="MHENQQPQTEAFELSAAEREAIEHEKHHYEDPRAASIEALKIVQ KQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHITGY QGIQAALEKNLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHSHLTPEAIPE LLERYK" regulatory complement(2435996..2436001) /regulatory_class="ribosome_binding_site" /gene="nuoE" /locus_tag="STM2325" /note="putative RBS for nuoF; RegulonDB:STMS1H002455" gene complement(2436487..2438303) /gene="nuoC" /locus_tag="STM2326" /db_xref="GeneID:1253848" CDS complement(2436487..2438289) /gene="nuoC" /locus_tag="STM2326" /EC_number="1.6.5.3" /note="nadh dehydrogenase I chain C/D. (SW:NUCD_SALTY)" /codon_start=1 /transl_table=11 /product="NADH-quinone oxidoreductase subunit C/D" /protein_id="NP_461268.1" /db_xref="GI:16765653" /db_xref="GeneID:1253848" /translation="MVNNMTDLTAQDAAWSTRDHLDDPVIGELRNRFGPDAFTVQATR TGIPVVWVKREQLLEVGDFLKKLPKPYVMLFDLHGMDERLRTHRDGLPAADFSVFYHL ISIERNRDIMLKVALSENDLRVPTFTKLFPNANWYERETWEMFGIDIEGHPHLTRIMM PQTWEGHPLRKDYPARATEFDPFELTKAKQDLEMEALTFKPEDWGMKRGTDNEDFMFL NLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIE YLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMT PVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPKRLD SYEKAALRNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYENF DFEVPVGGGVSDCYTRVMLKVEELRQSLRILQQCLDNMPEGPFKADHPLTTPPPKERT LQHIETLITHFLQVSWGPVMPAQESFQMVEATKGINSYYLTSDGSTMSYRTRVRTPSF AHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR" regulatory complement(2436493..2436498) /regulatory_class="ribosome_binding_site" /gene="nuoE" /locus_tag="STM2325" /note="putative RBS for nuoE; RegulonDB:STMS1H002456" regulatory complement(2438298..2438303) /regulatory_class="ribosome_binding_site" /gene="nuoC" /locus_tag="STM2326" /note="putative RBS for nuoC; RegulonDB:STMS1H002457" gene complement(2438376..2439049) /gene="nuoB" /locus_tag="STM2327" /db_xref="GeneID:1253849" CDS complement(2438376..2439038) /gene="nuoB" /locus_tag="STM2327" /EC_number="1.6.5.3" /note="similar to E. coli NADH dehydrogenase I chain B (AAC75347.1); Blastp hit to AAC75347.1 (220 aa), 99% identity in aa 1 - 220" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase" /protein_id="NP_461269.1" /db_xref="GI:16765654" /db_xref="GeneID:1253849" /translation="MDYTLTRIDPNGENDRYPLQKQEIVTDPLEQEVNKNVFMGKLHD MVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTC FTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPP RPEAYMQALMLLQESIGKERRPLSWVVGDQGVYRANMQPERERKRGERIAVTNLRTPD EI" regulatory complement(2439044..2439049) /regulatory_class="ribosome_binding_site" /gene="nuoB" /locus_tag="STM2327" /note="putative RBS for nuoB; RegulonDB:STMS1H002458" gene complement(2439054..2439694) /gene="nuoA" /locus_tag="STM2328" /db_xref="GeneID:1253850" CDS complement(2439054..2439497) /gene="nuoA" /locus_tag="STM2328" /EC_number="1.6.5.3" /note="similar to E. coli NADH dehydrogenase I chain A (AAC75348.1); Blastp hit to AAC75348.1 (147 aa), 97% identity in aa 1 - 147" /codon_start=1 /transl_table=11 /product="NADH-quinone oxidoreductase subunit A" /protein_id="NP_461270.1" /db_xref="GI:16765655" /db_xref="GeneID:1253850" /translation="MSMSTSTEVIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARAR HKNVPFESGIDSVGTARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVE AAIFIFVLLAGLVYLARIGALDWTPARSRRERMNPETNSIANRQR" protein_bind complement(2439613..2439635) /gene="nuoA" /locus_tag="STM2328" /note="putative binding site for FNR, RegulonDB: STMS1H000176" /bound_moiety="FNR" regulatory complement(2439667..2439675) /regulatory_class="minus_10_signal" /gene="nuoA" /locus_tag="STM2328" /note="putative -10_signal for nuoA; RegulonDB:STMLTH004538" protein_bind complement(2439683..2439709) /note="putative binding site for IHF, RegulonDB: STMS1H000217" /bound_moiety="IHF" regulatory complement(2439686..2439694) /regulatory_class="minus_35_signal" /gene="nuoA" /locus_tag="STM2328" /note="putative -35_signal for nuoA; RegulonDB:STMLTH004538" protein_bind complement(2439695..2439715) /note="putative binding site for NarL, RegulonDB: STMS1H000313" /bound_moiety="NarL" protein_bind complement(2439800..2439811) /note="putative binding site for ArcA, RegulonDB: STMS1H000018" /bound_moiety="ArcA" gene complement(2439892..2440048) /locus_tag="STM2329" /db_xref="GeneID:1253851" CDS complement(2439892..2440044) /locus_tag="STM2329" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461271.1" /db_xref="GI:16765656" /db_xref="GeneID:1253851" /translation="MPICTRLTAQIVKVAVNQPVAIRSSMWAKNNQNIHFMNLHVKKL EKLLLF" regulatory complement(2440043..2440048) /regulatory_class="ribosome_binding_site" /locus_tag="STM2329" /note="putative RBS for STM2329; RegulonDB:STMS1H002459" gene complement(2440124..2441072) /gene="lrhA" /locus_tag="STM2330" /db_xref="GeneID:1253852" CDS complement(2440124..2441062) /gene="lrhA" /locus_tag="STM2330" /note="similar to E. coli NADH dehydrogenase transcriptional regulator, LysR family (AAC75349.1); Blastp hit to AAC75349.1 (312 aa), 86% identity in aa 1 - 312" /codon_start=1 /transl_table=11 /product="transcriptional regulator LrhA" /protein_id="NP_461272.1" /db_xref="GI:16765657" /db_xref="GeneID:1253852" /translation="MINANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQ QMQRLEQLVGKELFARHGRNKLLTEHGIQLLGYARKILRFNDEACSSLMFSNLQGVLT IGASDESADTILPFLLSRISSVYPKLALDVRVKRNAYMVDMVKSQEVDLVVTTNQPHS LDCLNLRTSPTHWYCAAEYVLQRGEPVPLVLLDDPSPFRDMVLETLNAAGIPWRLAYV ASTLPAVRAAVKAGLGVTARPVEMMSPDLRVLGAADGLPPLPDTEYLLCRDPNSQNEL AMVIFHAMESYQNPWHYNQFSAEGGDDPLMVEGGFE" regulatory complement(2441067..2441072) /regulatory_class="ribosome_binding_site" /gene="lrhA" /locus_tag="STM2330" /note="putative RBS for lrhA; RegulonDB:STMS1H002460" gene 2441981..2443208 /gene="yfbQ" /locus_tag="STM2331" /db_xref="GeneID:1253853" regulatory 2441981..2441986 /regulatory_class="ribosome_binding_site" /gene="yfbQ" /locus_tag="STM2331" /note="putative RBS for yfbQ; RegulonDB:STMS1H002461" CDS 2441994..2443208 /gene="yfbQ" /locus_tag="STM2331" /EC_number="2.6.1.1" /note="putative regulator; similar to E. coli putative aminotransferase (AAC75350.1); Blastp hit to AAC75350.1 (405 aa), 96% identity in aa 1 - 404" /codon_start=1 /transl_table=11 /product="aminotransferase" /protein_id="NP_461273.1" /db_xref="GI:16765658" /db_xref="GeneID:1253853" /translation="MSPIEKSSKLENVCYDIRGPVLKEAKRLEEEGNKVLKLNIGNPA PFGFEAPDEILVDVIRNLPTAQGYCDSKGLYSARKAIMQHYQARGMRDVTVEDIYIGN GVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDD IRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVNIAREHNLIIFADEIYDKILYDDA EHHSIAALAPDLLTITFNGLSKTYRVAGFRQGWMVLNGPKKHAKGYIEGLEMLASMRL CANVPAQHAIQTALGGYQSISEFILPGGRLYEQRNRAWELINDIPGVSCVKPRGALYM FPRIDAKRFNIHDDQKMVLDFLLQEKVLLVQGTAFNWPWPDHFRIVTLPREDDLEMAI NRFGRFLSGYHQ" gene 2443292..2443901 /locus_tag="STM2332" /db_xref="GeneID:1253854" regulatory 2443292..2443297 /regulatory_class="ribosome_binding_site" /locus_tag="STM2332" /note="putative RBS for STM2332; RegulonDB:STMS1H002462" CDS 2443302..2443901 /locus_tag="STM2332" /note="similar to E. coli putative alpha helix protein (AAC75351.1); Blastp hit to AAC75351.1 (199 aa), 91% identity in aa 1 - 199" /codon_start=1 /transl_table=11 /product="5'-deoxynucleotidase" /protein_id="NP_461274.1" /db_xref="GI:16765659" /db_xref="GeneID:1253854" /translation="MKQSHFFAHLSRMKLINRWPLMRNVRTENVSEHSLQVAMVAHAL AAIKNRKFGGQLNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQ KLVDMAPDELRDIFAPLIDENAWSEEEQAIVKQADALCAYLKCLEELSAGNNEFGLAK TRLEKTLELRRSQEMDYFMAVFVPSFHLSLDEISQDSPL" gene complement(2443993..2445830) /gene="yfbS" /locus_tag="STM2333" /db_xref="GeneID:1253855" CDS complement(2443993..2445819) /gene="yfbS" /locus_tag="STM2333" /note="similar to E. coli putative transport protein (AAC75352.1); Blastp hit to AAC75352.1 (610 aa), 90% identity in aa 1 - 610" /codon_start=1 /transl_table=11 /product="SLC13 family permease" /protein_id="NP_461275.1" /db_xref="GI:16765660" /db_xref="GeneID:1253855" /translation="MNGELIWVLSLLAIAVVLFATGKVRMDAVALFVIVAFVLSGTLT LPEAFSGFSDPNVILIAALFIIGDGLVRTGVATVVGTWLVKMAGSSEIKMLVLLMITV AGLGAFMSSTGVVAIFIPVVLSVSMHMQTSPSRLMMPLSFAGLISGMMTLVATPPNLV VNSELLREGLHGFNFFSVTPLGVVVLALGIVYMLVMRFMLKGDAPGQQAGKRRTFRDL IREYRLTGRARRLAIRPGSPMVGQRLDDLKLRERYGANVIGVERWRRFRRVIVNVNGV SEFRARDVLLIDMSAAEVDLREFCAEQLLEPMVLRGEYFSDQALDVGMAEISLIPESE LIGKSVREIAFRTRYGLNVVGLKRDGVALEGSLADEPLLMGDIILVVGNWKLISLLGQ KGRDFVVLNMPVEVSEASPAHSQAPHAIFCLVLMVALMLTDEIPNPIAAIIACLLMGK FRCIDAESAYKAIHWPSIILIVGMMPFALALQKTGGVSLVVQGLMDIGGGYGPYMMLG CLFVLCAVIGLFISNTATAVLMAPIALAAAKSMGVSPYPFAMAVAMAASAAFMTPVSS PVNTLVLGPGNYSFSDFVKLGVPFTLIVMAVCIVMIPMLFPF" regulatory complement(2445825..2445830) /regulatory_class="ribosome_binding_site" /gene="yfbS" /locus_tag="STM2333" /note="putative RBS for yfbS; RegulonDB:STMS1H002463" gene complement(2445896..2446573) /gene="yfbT" /locus_tag="STM2334" /db_xref="GeneID:1253856" CDS complement(2445896..2446573) /gene="yfbT" /locus_tag="STM2334" /note="similar to E. coli putative phosphatase (AAC75353.1); Blastp hit to AAC75353.1 (222 aa), 86% identity in aa 1 - 221" /codon_start=1 /transl_table=11 /product="putative phosphatase" /protein_id="NP_461276.3" /db_xref="GI:1109557688" /db_xref="GeneID:1253856" /translation="MPEEARVQCKGFLFDLDGTLVDSLPAVERAWCSWADRFNLAHDE VLGFIHGKQAITSLRHFMAGKSEAEIAAEFTRLEQIEATETAGITALPGAVDLLNHLN KVGIPWAIVTSGSMPVARARHQVAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLA PQECVVVEDAPAGVLSGLAAGCHVIAVNAPADTPRLADVDFALDSLTQLSVAKQPNGD VVVLRKT" gene complement(2446566..2447072) /gene="yfbU" /locus_tag="STM2335" /db_xref="GeneID:1253857" CDS complement(2446566..2447060) /gene="yfbU" /locus_tag="STM2335" /note="similar to E. coli orf, hypothetical protein (AAC75354.1); Blastp hit to AAC75354.1 (170 aa), 95% identity in aa 7 - 170" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461277.1" /db_xref="GI:16765662" /db_xref="GeneID:1253857" /translation="MEMTNAQRLILSNQYKMMTMLDPTNAERYRRLQTIIERGYGLQM RELDREFGELTEETCRTIIDIMEMYHALHVSWTNLKDTQAIDERRVTFLGFDAATEAR YLGYVRFMVNIEGRYTHFDAGTHGFNAQTPMWEKYQRMLNVWHACPRQYHLSANEINQ IINA" regulatory complement(2447067..2447072) /regulatory_class="ribosome_binding_site" /gene="yfbU" /locus_tag="STM2335" /note="putative RBS for yfbU; RegulonDB:STMS1H002464" gene complement(2447143..2447608) /locus_tag="STM2336" /db_xref="GeneID:1253858" CDS complement(2447143..2447598) /locus_tag="STM2336" /note="similar to E. coli orf, hypothetical protein (AAC75355.1); Blastp hit to AAC75355.1 (151 aa), 95% identity in aa 1 - 151" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461278.1" /db_xref="GI:16765663" /db_xref="GeneID:1253858" /translation="MSTPDNRSVNFFSLFRRGQHYAKTWPMEKRLAPVFVENRVIRMT RYAIRFMPPVAVFTLCWQIALGGQLGPAVATALFALSLPMQGLWWLGKRSVTPLPPSI LNWFYEVRGKLQEAGQALAPVEGKPDYQALADTLKRAFKQLDKTFLDDL" regulatory complement(2447603..2447608) /regulatory_class="ribosome_binding_site" /locus_tag="STM2336" /note="putative RBS for STM2336; RegulonDB:STMS1H002465" gene 2447927..2449140 /gene="ackA" /locus_tag="STM2337" /db_xref="GeneID:1253859" regulatory 2447927..2447932 /regulatory_class="ribosome_binding_site" /gene="ackA" /locus_tag="STM2337" /note="putative RBS for ackA; RegulonDB:STMS1H002466" CDS 2447938..2449140 /gene="ackA" /locus_tag="STM2337" /EC_number="2.7.2.1" /note="propionate kinase 2; similar to E. coli acetate kinase (AAC75356.1); Blastp hit to AAC75356.1 (400 aa), 97% identity in aa 1 - 400" /codon_start=1 /transl_table=11 /product="acetate kinase" /protein_id="NP_461279.1" /db_xref="GI:16765664" /db_xref="GeneID:1253859" /translation="MSSKLVLVLNCGSSSLKFAIIDAVNGDEYLSGLAECFHLPEARI KWKMDGSKQEAALGAGAAHSEALNFIVNTILAQKPELSAQLTAIGHRIVHGGEKYTSS VVIDESVIQGIKDSASFAPLHNPAHLIGIAEALKSFPQLKDKNVAVFDTAFHQTMPEE SYLYALPYSLYKEHGVRRYGAHGTSHFYVTQEAAKMLNKPVEELNIITCHLGNGGSVS AIRNGKCVDTSMGLTPLEGLVMGTRSGDIDPAIIFHLHDTLGMSVDQINKMLTKESGL LGLTEVTSDCRYVEDNYATKEDAKRAMDVYCHRLAKYIGSYTALMDGRLDAVVFTGGI GENAAMVRELSLGKLGVLGFEVDHERNLAARFGKSGFINKEGTRPAVVIPTNEELVIA QDASRLTA" gene 2449206..2451361 /gene="pta" /locus_tag="STM2338" /db_xref="GeneID:1253860" regulatory 2449206..2449211 /regulatory_class="ribosome_binding_site" /gene="pta" /locus_tag="STM2338" /note="putative RBS for pta; RegulonDB:STMS1H002467" CDS 2449217..2451361 /gene="pta" /locus_tag="STM2338" /EC_number="2.3.1.8" /note="similar to E. coli phosphotransacetylase (AAC75357.1); Blastp hit to AAC75357.1 (714 aa), 96% identity in aa 1 - 714" /codon_start=1 /transl_table=11 /product="phosphate acetyltransferase" /protein_id="NP_461280.1" /db_xref="GI:16765665" /db_xref="GeneID:1253860" /translation="MSRIIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPR AGGDAPDQTTTIVRANSTLPAAEPLKMSHVESLLSSNQKDVLMEEIIANYHANTKDAE VVLVEGLVPTRKHQFAQSLNYEIAKTLNAEIVFVMSQGTDTPEQLNERIELTRSSFGG AKNTNITGVIINKLNAPVDEQGRTRPDLSEIFDDSSKAQVIKIDPAKLQESSPLPVLG AVPWSFDLIATRAIDMARHLNATIINEGDIKTRRVKSVTFCARSIPHMLEHFRAGSLL VTSADRPDVLVAACLAAMNGVEIGALLLTGGYEMDARISKLCERAFATGLPVFMVNTN TWQTSLSLQSFNLEVPVDDHERIEKVQEYVANYVNAEWIESLTATSERSRRLSPPAFR YQLTELARKAGKRVVLPEGDEPRTVKAAAICAERGIATCVLLGNPDEINRVAASQGVE LGAGIEIVDPEVVRESYVARLVELRKSKGMTEPVAREQLEDNVVLGTLMLEQDEVDGL VSGAVHTTANTIRPPLQLIKTAPGSSLVSSVFFMLLPEQVYVYGDCAINPDPTAEQLA EIAIQSADSAIAFGIEPRVAMLSYSTGTSGAGSDVEKVREATRLAQEKRPDLMIDGPL QYDAAVMADVAKSKAPNSPVAGRATVFIFPDLNTGNTTYKAVQRSADLISIGPMLQGM RKPVNDLSRGALVDDIVYTIALTAIQASQQQQ" gene 2451564..2453099 /gene="yfcC" /locus_tag="STM2339" /db_xref="GeneID:1253861" regulatory 2451564..2451569 /regulatory_class="ribosome_binding_site" /gene="yfcC" /locus_tag="STM2339" /note="putative RBS for yfcC; RegulonDB:STMS1H002468" CDS 2451579..2453099 /gene="yfcC" /locus_tag="STM2339" /note="similar to E. coli putative S-transferase (AAC75358.1); Blastp hit to AAC75358.1 (513 aa), 91% identity in aa 8 - 513" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461281.1" /db_xref="GI:16765666" /db_xref="GeneID:1253861" /translation="MSVVTESKTARKWAMPDTLVIIFFVAILTSIATWVVPVGMFDSQ EVQYQVDGQTKTRKVVDPHSFRIVTNEAGEAQYHRVQFFTTGDERPGLMNFPFEGLTS GSKFGTAVGIIMFMLVIGGAFGIVMRTGTVDNGILALIRHTRGNEVLFIPVLFVLFSL GGAVFGMGEEAVAFAIIIAPLMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQ GIAGVPVLSGSGLRIVVWIVATLIGLVFTLVYASRVKKNPLLSRVHESDRYFREQQDE VVQRPFTFGDWLVLLVLTGVMIWVVWGVIVHAWFIPEIASQFFTMGVVIGLIGVIFRL NGMTVNVMASSFTEGARMMIAPALLVGFAKGILLLVGNGEAGEPSVLNTLLNSIAHGI SGLNNAIAAWFMLLFQAVFNFFVTSGSGQAALTMPLLAPLGDLVGVNRQVTVLAFQFG DGFSHIIYPTSASLMATLGVCRVDFRNWLKVGASLLGLLFIMSSVVVIGAQMMGYH" gene complement(2453148..2454108) /locus_tag="STM2340" /db_xref="GeneID:1253862" CDS complement(2453148..2454101) /locus_tag="STM2340" /EC_number="2.2.1.1" /note="similar to E. coli 1-deoxyxylulose-5-phosphate synthase; flavoprotein (AAC73523.1); Blastp hit to AAC73523.1 (620 aa), 26% identity in aa 323 - 619" /codon_start=1 /transl_table=11 /product="putative transketolase" /protein_id="NP_461282.1" /db_xref="GI:16765667" /db_xref="GeneID:1253862" /translation="MIKLAPAGLKDDIEMRKVYAGFIAGQIEAGSPIIALEADLMSSM AMDSVARDYPQHVINCGIMEANVIGTAAGLALTGRKPFVHTFTAFASRRCFDQLFMAL DYQRNNVKVIASDAGVTACHNGGTHMSFEDMGIVRGLAHSVVLEVTDAVMFADILRQL MDLDGFYWLRTIRKQARSIYAPGSTFTIGKGNVLREGDDITLIANGIMVAEALEAARQ LEQEGVSAAVIDMFTLKPIDRMLVKNYAEKTRRIVTCENHSIHNGLGSAVAEVLVENC PVPMRRVGVKERYGQVGTQDFLQKEYGLTAEAIVEAAKSLL" gene complement(2454094..2454930) /locus_tag="STM2341" /db_xref="GeneID:1253863" CDS complement(2454094..2454924) /locus_tag="STM2341" /EC_number="2.2.1.1" /note="similar to E. coli transketolase 1 isozyme (AAC75972.1); Blastp hit to AAC75972.1 (663 aa), 33% identity in aa 6 - 267" /codon_start=1 /transl_table=11 /product="putative transketolase" /protein_id="NP_461283.1" /db_xref="GI:16765668" /db_xref="GeneID:1253863" /translation="MNVTEITQLARDIRVATLKSLNHLGFGHYGGSMSVVETLAVLYG AVMKIDPADPDWPERDYFVLSKGHAGPALYSTLAIKGYFPREELNTLNQNGTRLPSHP DRLKTRGVDATTGSLGQGISIAGGMALSHKLARRPNRVFCIVGDGELNEGQCWEAFQF IAHHRLNNLTVFIDWNKQQLDGELEEIINPFDLEGKFRAFGFDVVTVKGDDIAGLLAV VQPVPPADAQPRVVILDSIKGQGVPCLEQLTNSHHLRLTDGMKQTLNEAIHQLEVMHD " regulatory complement(2454103..2454108) /regulatory_class="ribosome_binding_site" /locus_tag="STM2341" /note="putative RBS for STM2340; RegulonDB:STMS1H002469" gene complement(2454921..2456319) /locus_tag="STM2342" /db_xref="GeneID:1253864" CDS complement(2454921..2456312) /locus_tag="STM2342" /note="similar to E. coli orf, hypothetical protein (AAC77150.1); Blastp hit to AAC77150.1 (484 aa), 27% identity in aa 30 - 483" /codon_start=1 /transl_table=11 /product="PTS ascorbate transporter subunit IIC" /protein_id="NP_461284.3" /db_xref="GI:1109557689" /db_xref="GeneID:1253864" /translation="MFILETLNFVVDILKVPSVLVGLIALIGLVAQKKAFSDVVKGTI KTILGFIVLGGGATVLVGSLNPLGGMFEHAFNIQGIIPNNEAIVSIALEKYGASTALI MAFGMVANIVVARFTRLKYIFLTGHHTFYMACMIGVILTVAGFEGVGLVFTGSLILGL VMAFFPALAQRYMRRITGTDDIAFGHFGTLGYVLSGWIGSLCGKGSRSTEEMNLPKNL SFLRDSSISISLTMMIIYLIMAVSAGREYVEATFSGGQNYLVYAIIMAITFAAGVFII LQGVRLILAEIVPAFTGFSEKLVPNARPALDCPVVYPYAPNAVLIGFLFSFLGGLVGL FLLGQMKLVLILPGVVPHFFTGATAGVFGNATGGRRGAMIGAFANGLLITFLPVLLLP VLGAIGFANTTFSDADFGVIGILLGNLARYLSPMAITGLVVALFALLVAYNVLAKNKK ATAEVQENSGAKE" regulatory complement(2454925..2454930) /regulatory_class="ribosome_binding_site" /locus_tag="STM2341" /note="putative RBS for STM2341; RegulonDB:STMS1H002470" regulatory complement(2456314..2456319) /regulatory_class="ribosome_binding_site" /locus_tag="STM2342" /note="putative RBS for STM2342; RegulonDB:STMS1H002471" gene complement(2456333..2456611) /locus_tag="STM2343" /db_xref="GeneID:1253865" CDS complement(2456333..2456605) /locus_tag="STM2343" /codon_start=1 /transl_table=11 /product="PTS mannitol transporter subunit IIB" /protein_id="NP_461285.1" /db_xref="GI:16765670" /db_xref="GeneID:1253865" /translation="MKIMAICGSGLGSSFMVEMNIKKVLKKLNIDAEVEHSDLSSATP GAADLFVMAKDIAASASVPESQLVVINNIIDINELETQLRAWFAKQ" regulatory complement(2456606..2456611) /regulatory_class="ribosome_binding_site" /locus_tag="STM2343" /note="putative RBS for STM2343; RegulonDB:STMS1H002472" gene complement(2456686..2457135) /locus_tag="STM2344" /db_xref="GeneID:1253866" CDS complement(2456686..2457129) /locus_tag="STM2344" /EC_number="2.7.1.191" /note="similar to E. coli putative PTS system enzyme II A component (AAC77152.1); Blastp hit to AAC77152.1 (154 aa), 41% identity in aa 12 - 149" /codon_start=1 /transl_table=11 /product="PTS ascorbate transporter subunit IIA" /protein_id="NP_461286.1" /db_xref="GI:16765671" /db_xref="GeneID:1253866" /translation="MLGTWLSDATITLQESVETWPQALEICGKPLLDAGVIAPEYLTA IVQQHQKLGPYYVLAPGLAMPHARPEEGAKGLGLSLLKLQHGVSFGADEFDPVDIIIM LAAPDKHSHIEMISALAELFSSDVDMEKLHQAKNLEDIKTIIDRF" regulatory complement(2457130..2457135) /regulatory_class="ribosome_binding_site" /locus_tag="STM2344" /note="putative RBS for STM2344; RegulonDB:STMS1H002473" gene 2457374..2458401 /locus_tag="STM2345" /db_xref="GeneID:1253867" regulatory 2457374..2457379 /regulatory_class="ribosome_binding_site" /locus_tag="STM2345" /note="putative RBS for STM2345; RegulonDB:STMS1H002474" CDS 2457382..2458401 /locus_tag="STM2345" /note="similar to E. coli regulator of gluconate (gnt) operon (AAC76463.1); Blastp hit to AAC76463.1 (313 aa), 37% identity in aa 8 - 299" /codon_start=1 /transl_table=11 /product="LacI family transcriptional regulator" /protein_id="NP_461287.1" /db_xref="GI:16765672" /db_xref="GeneID:1253867" /translation="MSIPRKRRSTGKVTIADVAQLAGVGTMTVSRALRTPEQVSDKLR EKIEAAVHELGYMPNLAASALASASSHTIAMVVPNLAEAGCSEMFAGLQQILQPAGYQ IMLAESQHRVEQEEKLLETLLASNIAAAILLSVEHSTTVRQWLKNASIPVMEMGAIRS DPIDMNIGIDNVAAMYELTEMLIQRGYQNIGLLCANQEQWIFQQHLHGWYKAMLRHHM SPNRVINAALPPNFSTGASQLPEFLLAWPELDALVCVSDELACGALYECQRRRIKVPD DLAVVGFGDSDVSRVCQPPLTTMAVPHRKIGSEAGRALLERLNQGNWSDRKSIASSLC MRESC" gene complement(2458407..2458972) /locus_tag="STM2346" /db_xref="GeneID:1253868" CDS complement(2458407..2458961) /locus_tag="STM2346" /note="similar to E. coli putative regulator (AAC75359.1); Blastp hit to AAC75359.1 (180 aa), 92% identity in aa 1 - 180" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase" /protein_id="NP_461288.1" /db_xref="GI:16765673" /db_xref="GeneID:1253868" /translation="MVEQRRLASTEWVDIVNEDNEVIAQSSREQMRAQRLRHRATYIV VHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFA EHGLFYFEDQHCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLK ALALWMTRNAKNEAALQEKPEETE" regulatory complement(2458967..2458972) /regulatory_class="ribosome_binding_site" /locus_tag="STM2346" /note="putative RBS for STM2346; RegulonDB:STMS1H002475" gene complement(2459018..2459581) /gene="yfcE" /locus_tag="STM2347" /db_xref="GeneID:1253869" CDS complement(2459018..2459569) /gene="yfcE" /locus_tag="STM2347" /note="similar to E. coli orf, hypothetical protein (AAC75360.1); Blastp hit to AAC75360.1 (184 aa), 85% identity in aa 2 - 183" /codon_start=1 /transl_table=11 /product="YfcE family phosphodiesterase" /protein_id="NP_461289.1" /db_xref="GI:16765674" /db_xref="GeneID:1253869" /translation="MKLMFASDIHGSLPATERVLERFAQSGARWLVILGDVLNHGPRN ALPEGYAPAQVAERLNAVATQIIAVRGNCDSEVDQMLLHFPITAPWQQILTQERRLFL THGHLFGPTNLPALHTGDVLVYGHTHLPVAQQQEGLYHFNPGSVSIPKGGYAASYGIL DDNVLSVIALNDQSIIAQVAINS" regulatory complement(2459576..2459581) /regulatory_class="ribosome_binding_site" /gene="yfcE" /locus_tag="STM2347" /note="putative RBS for yfcE; RegulonDB:STMS1H002476" gene complement(2459625..2460278) /gene="yfcF" /locus_tag="STM2348" /db_xref="GeneID:1253870" CDS complement(2459625..2460269) /gene="yfcF" /locus_tag="STM2348" /note="similar to E. coli orf, hypothetical protein (AAC75361.1); Blastp hit to AAC75361.1 (214 aa), 80% identity in aa 1 - 214" /codon_start=1 /transl_table=11 /product="glutathione S-transferase" /protein_id="NP_461290.1" /db_xref="GI:16765675" /db_xref="GeneID:1253870" /translation="MSKPVIVLWSDANFFSPYVLSAWVALQEKGLSFTLKTRDLDQGE HLQPGWRGYALTQRVPVLEADNFELSESSAIAEYLEERFAPPQWERIYPHDLQKRARA RQIQAWLRSDLLPLREERPTDVVFAGAKKAPLSEAGKASAAKLFATAEALLGQGTQNL FGEWCIADTDLALMINRLALHGDDVPASLAAYATFQWQRASVQRFIALSSKRSG" regulatory complement(2460273..2460278) /regulatory_class="ribosome_binding_site" /gene="yfcF" /locus_tag="STM2348" /note="putative RBS for yfcF; RegulonDB:STMS1H002477" gene 2460401..2461059 /gene="yfcG" /locus_tag="STM2349" /db_xref="GeneID:1253871" regulatory 2460401..2460406 /regulatory_class="ribosome_binding_site" /gene="yfcG" /locus_tag="STM2349" /note="putative RBS for yfcG; RegulonDB:STMS1H002478" CDS 2460412..2461059 /gene="yfcG" /locus_tag="STM2349" /note="similar to E. coli putative S-transferase (AAC75362.1); Blastp hit to AAC75362.1 (215 aa), 83% identity in aa 1 - 208" /codon_start=1 /transl_table=11 /product="thiol:disulfide oxidoreductase" /protein_id="NP_461291.1" /db_xref="GI:16765676" /db_xref="GeneID:1253871" /translation="MIDLYYAPTPNGHKITLFLEEAELAYRLLKVDISKGNQFRPDFL AISPNNKIPAIVDHAPADGGQPLSLFESGEILLYLAEKSGKLLSGELRERHTTLQWLF WQVGGLGPMLGQNHHFNHFAPQAIPYAIERYQVETQRLYNVLNKRLETSPWLGGDHYS IADIASWPWVNAHQRQRIDLDTYPAVYNWFERIRTRPATARALLQAQLHCNSTKA" gene 2461174..2462078 /gene="yfcH" /locus_tag="STM2350" /db_xref="GeneID:1253872" regulatory 2461174..2461179 /regulatory_class="ribosome_binding_site" /gene="yfcH" /locus_tag="STM2350" /note="putative RBS for yfcH; RegulonDB:STMS1H002479" CDS 2461185..2462078 /gene="yfcH" /locus_tag="STM2350" /note="similar to E. coli putative sugar nucleotide epimerase (AAC75364.1); Blastp hit to AAC75364.1 (297 aa), 86% identity in aa 1 - 297" /codon_start=1 /transl_table=11 /product="TIGR01777 family protein" /protein_id="NP_461292.1" /db_xref="GI:16765677" /db_xref="GeneID:1253872" /translation="MQILITGGTGLIGRHLIPRLLTLGHQVTVVTRNPDNARQILDSR VTLWKGLAEREHLNEIDAIINLAGEPIADKRWTSQQKERLCQSRWAITQKLVDLIHAS ATPPSVLISGSATGYYGDLGDVVVTEDEPPHNEFTHKLCARWEQIACRAQSDQTRVCL LRTGVVLAPQGGILGKMVPPFRLGLGGPVGNGRQYLAWIHIDDMVNGILWLLDNDLRG PFNMVSPYPVHNEHFAHALGRALRRPAIIRIPATAIRLLMGESSVLVLGGQRALPKRL EAAGFAFRWYDLEEALADVIR" gene complement(2462130..2462906) /gene="hisP" /locus_tag="STM2351" /db_xref="GeneID:1253873" CDS complement(2462130..2462906) /gene="hisP" /locus_tag="STM2351" /note="ABC superfamily (atp_bind); histidine transport ATP-binding protein HISP. (SW:HISP_SALTY)" /codon_start=1 /transl_table=11 /product="histidine and lysine/arginine/ornithine transport protein" /protein_id="NP_461293.1" /db_xref="GI:16765678" /db_xref="GeneID:1253873" /translation="MMSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSG KSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQ RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARH VSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLK" gene complement(2462917..2463636) /gene="hisM" /locus_tag="STM2352" /db_xref="GeneID:1253874" CDS complement(2462917..2463624) /gene="hisM" /locus_tag="STM2352" /note="ABC superfamily (membrane); histidine transport system permease protein HISM. (SW:HISM_SALTY)" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter permease" /protein_id="NP_461294.1" /db_xref="GI:16765679" /db_xref="GeneID:1253874" /translation="MIEIIQEYWKSLLWTDGYRFTGVAITLWLLISSVVMGGLLAVIL AVGRVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYSGMYTLEIVKGTDLLNAFFRSGL NCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIAL PAYSNEVILMLHSTALAFTATVPDLLKIARDINSATYQPFTAFGIAAVLYLLISYVLI SLFRRAERRWLQHVSSK" gene complement(2463621..2464320) /gene="hisQ" /locus_tag="STM2353" /db_xref="GeneID:1253875" CDS complement(2463621..2464307) /gene="hisQ" /locus_tag="STM2353" /note="ABC superfamily (membrane); histidine transport system permease protein HISQ. (SW:HISQ_SALTY)" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter permease" /protein_id="NP_461295.1" /db_xref="GI:16765680" /db_xref="GeneID:1253875" /translation="MLYGFSGVILQGAIVTLELALSSVVLAVLIGLVGAGAKLSQNRV TGLIFEGYTTLIRGVPDLVLMLLIFYGLQIALNVVTDSLGIDQIDIDPMVAGIITLGF IYGAYFTETFRGAFMAVPKGHIEAATAFGFTHGQTFRRIMFPAMMRYALPGIGNNWQV ILKATALVSLLGLEDVVKATQLAGKSTWEPFYFAVVCGLIYLVFTTVSNGVLLLLERR YSVGVKRADL" regulatory complement(2463631..2463636) /regulatory_class="ribosome_binding_site" /gene="hisQ" /locus_tag="STM2353" /note="putative RBS for hisM; RegulonDB:STMS1H002480" regulatory complement(2464315..2464320) /regulatory_class="ribosome_binding_site" /gene="hisQ" /locus_tag="STM2353" /note="putative RBS for hisQ; RegulonDB:STMS1H002481" gene complement(2464490..2465282) /gene="hisJ" /locus_tag="STM2354" /db_xref="GeneID:1253876" CDS complement(2464490..2465272) /gene="hisJ" /locus_tag="STM2354" /note="ABC superfamily (bind_prot); histidine-binding periplasmic protein precursor (HBP). (SW:HISJ_SALTY)" /codon_start=1 /transl_table=11 /product="histidine ABC transporter substrate-binding protein HisJ" /protein_id="NP_461296.1" /db_xref="GI:16765681" /db_xref="GeneID:1253876" /translation="MKKLALSLSLVLAFSSATAAFAAIPQKIRIGTDPTYAPFESKNA QGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQE IAFTDKLYAADSRLVVAKNSDIQPTVASLKGKRVGVLQGTTQETFGNEHWAPKGIEIV SYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPAVKDEKLFGVGTG MGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGG" regulatory complement(2465277..2465282) /regulatory_class="ribosome_binding_site" /gene="hisJ" /locus_tag="STM2354" /note="putative RBS for hisJ; RegulonDB:STMS1H002482" gene complement(2465510..2466303) /gene="argT" /locus_tag="STM2355" /db_xref="GeneID:1253877" CDS complement(2465510..2466292) /gene="argT" /locus_tag="STM2355" /note="ABC superfamily (bind_prot); lysine-arginine-ornithine-binding periplasmic protein precursor(LAO-binding protein). (SW:ARGT_SALTY)" /codon_start=1 /transl_table=11 /product="histidine ABC transporter substrate-binding protein HisJ" /protein_id="NP_461297.1" /db_xref="GI:16765682" /db_xref="GeneID:1253877" /translation="MKKTVLALSLLIGLGATAASYAALPQTVRIGTDTTYAPFSSKDA KGEFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQE IAFSDKLYAADSRLIAAKGSPIQPTLESLKGKHVGVLQGSTQEAYANDNWRTKGVDVV AYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTG VGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFNVYGD" regulatory complement(2466298..2466303) /regulatory_class="ribosome_binding_site" /gene="argT" /locus_tag="STM2355" /note="putative RBS for argT; RegulonDB:STMS1H002483" gene complement(2466581..2467163) /gene="ubiX" /locus_tag="STM2356" /db_xref="GeneID:1253878" CDS complement(2466581..2467150) /gene="ubiX" /locus_tag="STM2356" /EC_number="4.1.1.-" /note="similar to E. coli 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (AAC75371.1); Blastp hit to AAC75371.1 (189 aa), 91% identity in aa 1 - 189" /codon_start=1 /transl_table=11 /product="3-octaprenyl-4-hydroxybenzoate carboxy-lyase" /protein_id="NP_461298.1" /db_xref="GI:16765683" /db_xref="GeneID:1253878" /translation="MKRLIVGISGASGAIYGVRLLQILRDVDSVETHLVMSQAARQTL ALETHFSLREVQALADVTHDARDIAASISSGSYPTAGMVILPCSIKTLSGIVHSYTDG LLTRAADVILKERRPLVLCVRETPLHIGHLRLMTQAAEIGAVIMPPVPAFYHLPQTLD DVINQTVNRVLDQFDIPLPHDLFVRWQGA" regulatory complement(2467158..2467163) /regulatory_class="ribosome_binding_site" /gene="ubiX" /locus_tag="STM2356" /note="putative RBS for ubiX; RegulonDB:STMS1H002484" gene complement(2467177..2468589) /locus_tag="STM2357" /db_xref="GeneID:1253879" CDS complement(2467177..2468583) /locus_tag="STM2357" /note="similar to E. coli putative amino acid/amine transport protein (AAC73363.1); Blastp hit to AAC73363.1 (475 aa), 36% identity in aa 9 - 463" /codon_start=1 /transl_table=11 /product="amino acid permease" /protein_id="NP_461299.1" /db_xref="GI:16765684" /db_xref="GeneID:1253879" /translation="MDTLQQSPPAEPEGGLRRNLKKRHLLMMSLGGTIGTGLFIGIAE PLSSVGPAGTLLAYLFAGTIMLATMMCLGELSCAFPHSGSFQHYALMFMPSPCWSYTI GWLYWFSWVFSLAADLTAAGFIAHQFFPAVPVYMFCLAILLILTAINLTSAKSFGECE YWLSAIKVFAIVLFICAGGVMIYSLMGHSDWHPTLKTDGMWFPHGWEQIVVYMTIVIY SFQGVELVGNAAGETESPHIILPKVILGIGLRIILFYGLAIAVLALVYPHELTPNGQS PFVWVFSHAGIPGADTLMTLVIFSAAVSAANSAIYASSRMLWSMAGDRFAPACFGKTN GGGVPVYAILITALLALVSLLTRYIPAQQFYLYLIASTGQVGCLAWITIGWCQYRFRQ SVRNGTYASDLLRYRSPLFPWTARFVIITNFAIMVGTWFSEQGVVIMLVELAFMIGIL LSWYLFRPTLSRLRNTVG" regulatory complement(2468584..2468589) /regulatory_class="ribosome_binding_site" /locus_tag="STM2357" /note="putative RBS for STM2357; RegulonDB:STMS1H002485" gene complement(2468647..2469757) /locus_tag="STM2358" /db_xref="GeneID:1253880" CDS complement(2468647..2469750) /locus_tag="STM2358" /note="similar to E. coli orf, hypothetical protein (AAC76406.1); Blastp hit to AAC76406.1 (387 aa), 27% identity in aa 33 - 293" /codon_start=1 /transl_table=11 /product="amino-acid racemase" /protein_id="NP_461300.1" /db_xref="GI:16765685" /db_xref="GeneID:1253880" /translation="MYMPVLEINLRKLEENARTEKALLASSGIDVMAVNKVFDGCVET AQAVFNGGITVIAESRTYNLKKIRETGCTTCLLRSPCLSEIEDVVRYADISLNSEPVV LRALSQEAQRQGKTHQVLLMVDMGDLREGIWFGEYQRILETVTLITGLPGLELYGLGT NFNCYGTVLPTVKNGEDFLALAARLEADSGIPVRRLSAGNCTSYHLLDKGIWPQGLNH LRIGGLHEFGIEYVDMKYLNEFHHSAKPVDKACSDMYILEAEIIELNSKPTVPVGELG VDAFLQSKTFVDRGIRRRALLAFGRQDVPSDNCVPCDDAITILGQTSDHTLVDIEDCR QSLKVGDVVRFELDYTGLLMACQTKGVAWRFTR" gene complement(2469752..2471185) /locus_tag="STM2359" /db_xref="GeneID:1253881" CDS complement(2469752..2471173) /locus_tag="STM2359" /note="similar to E. coli acid sensitivity protein, putative transporter (AAC74565.1); Blastp hit to AAC74565.1 (511 aa), 25% identity in aa 15 - 479" /codon_start=1 /transl_table=11 /product="putative amino acid transporter" /protein_id="NP_461301.1" /db_xref="GI:16765686" /db_xref="GeneID:1253881" /translation="MSNTNSGLLGIKDIVFMNVIAILSLRQIPNVAPYGASAMLLWVI AAFCLFFPLAMVCGELSTGWPKDGGIFVWIKEAFGKRIAWIVVVCFLFSCVLFFPLML QFGFTALGYMIGGGLAENKAFIGIGSAVIFWLLTLMNIRGMEWTKIINSISAWCGVFI PSAILILLAVVWLCTGHQMQTDYTTAKNWIPDLGHWDTIVFLSSMMFAFAGLEVAPMI AGRTRNPQRDFPRAMAVSAAVIVGIYMVGTWALNTLLPAGKTDIVAGVMQAMHAAADT LHMPWLIPVMAICMFFGALGQINSWLVGPIYMLQEASREDNLLGDRIGKLHPVWKTPA FALTVQAIIVTVLCFSTFISPSVAAAYWMLTALTTITYFIPYLVMFPAFWRLRKTQPD TPRSFKIPGKVLPAILPALGFLSIAFAVALLFIPPSQIDMGGYFQYAGKIIGGAVLAV VVAEYIYHRAQKRNARLSMAGGK" regulatory complement(2469752..2469757) /regulatory_class="ribosome_binding_site" /locus_tag="STM2358" /note="putative RBS for STM2358; RegulonDB:STMS1H002486" regulatory complement(2471180..2471185) /regulatory_class="ribosome_binding_site" /locus_tag="STM2359" /note="putative RBS for STM2359; RegulonDB:STMS1H002487" gene complement(2471264..2472666) /locus_tag="STM2360" /db_xref="GeneID:1253882" CDS complement(2471264..2472661) /locus_tag="STM2360" /note="similar to E. coli diaminopimelate decarboxylase (AAC75877.1); Blastp hit to AAC75877.1 (420 aa), 27% identity in aa 182 - 419, 26% identity in aa 20 - 289" /codon_start=1 /transl_table=11 /product="putative diaminopimelate decarboxylase" /protein_id="NP_461302.1" /db_xref="GI:16765687" /db_xref="GeneID:1253882" /translation="MTDSIMQNYNQLREQVINGDRRFQHKDGHLCFEGVDLDALARQY PTPFYVFSEPEIIRNIHEIQQAFAAHKNTKTFFASKTCSVMGVLKAIRDAGICAEANS QYEVRKCLEIGFRGDQIVFNGVVKKPADLEYAIANDLYLINVDSLYELEHIDAISRKL KKVANVCVRVEPNVPSATHAELVTAFHAKSGLDLEQAEETCRRILAMPYVHLRGLHMH VGDQVPESEPFAKATKVLVDESRRLEEVLGIKFDLINVGGGIPVPYKYDDENGDPLKD NMYAGITAQDFADAVIREVHKWRTDVEICIEPGRKVTGSAAVLLTEVSCEKRKTNYDL NGNVECHVEWKFVDAGYSVLSDSQHFDWFFYVYNASRMTAAHDAWIKLAGPLCDGGDY FHMGVKGEEFLLPKETHVGDIVAFLDAGAYTIESQTVYNNRPRTGVVMIDKNGDTRLI RREDSYEDMVKYDIY" regulatory complement(2472661..2472666) /regulatory_class="ribosome_binding_site" /locus_tag="STM2360" /note="putative RBS for STM2360; RegulonDB:STMS1H002488" gene 2472865..2474299 /locus_tag="STM2361" /db_xref="GeneID:1253883" regulatory 2472865..2472870 /regulatory_class="ribosome_binding_site" /locus_tag="STM2361" /note="putative RBS for STM2361; RegulonDB:STMS1H002489" CDS 2472872..2474299 /locus_tag="STM2361" /note="similar to E. coli response regulator of ato, ornithine decarboxylase antizyme (sensor ATOS) (AAC75280.1); Blastp hit to AAC75280.1 (461 aa), 39% identity in aa 122 - 456" /codon_start=1 /transl_table=11 /product="sigma-54-dependent Fis family transcriptional regulator" /protein_id="NP_461303.1" /db_xref="GI:16765688" /db_xref="GeneID:1253883" /translation="MASTNQELASALRMFSRFFDLIHQPLAVINERGEYVYYNQESAD LDGYSIERAMGKHMLDVYPGMKETQSTMLSSLKKGVEYIGHYQIYYNARGQAVDYQHT TAPLYASDGGMVGVIEIGRNMSGVRRLQEQVVELNQLLYADHHEKHHAIITENPEMLS NIAKAKRLAASNIPVTIVGETGTGKELFSRLIHQCSKRANKPFIALNCGALPPTLIES TLFGTVRGAYTGAENSQGYLELANGGTLFLDELNAMPIEMQSKLLRFLQDKTFWRLGG QQQLHSDVRIVAAMNEAPVKLIQQERLRADLFYRLSVGMLTLPPLRARPEDIPLLANY FIDKYRNDVPQDIHGLSETARADLLNHAWPGNVRMLENAIVRSMIMQEKDGLLKHIIF EQDELNLGVPETAPENPLPSSPDPQYEGSLEVRVANYERHLIETALDTHQGNIAAAAR SLNVSRTTLQYKVQKYAIRFGVVRN" gene complement(2474335..2475866) /gene="purF" /locus_tag="STM2362" /db_xref="GeneID:1253884" CDS complement(2474335..2475852) /gene="purF" /locus_tag="STM2362" /EC_number="2.4.2.14" /note="PRPP amidotransferase; similar to E. coli amidophosphoribosyltransferase = PRPP amidotransferase (AAC75372.1); Blastp hit to AAC75372.1 (505 aa), 96% identity in aa 1 - 505" /codon_start=1 /transl_table=11 /product="amidophosphoribosyltransferase" /protein_id="NP_461304.1" /db_xref="GI:16765689" /db_xref="GeneID:1253884" /translation="MCGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFR LRKANGLVNDIFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHN GNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAAT NRQIRGAYACVAMIIGHGMVAFRDPHGIRPLVLGKRDVGDGRTEYMVASESVALDTLG FEFLRDVAPGEAIYITEKGQLFTRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSAR VNMGTKLGEKIAREWEDLDIDVVIPIPETSCDIALEIARILGKPYRQGFVKNRYVGRT FIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVY LASAAPEIRFPNVYGIDMPTANELIAHGREVDEIRQIIGADGLIFQDLNDLIEAVRAE NPDIQQFECSVFNGIYVTKDVDQQYLDFLDSLRNDDAKAVLFQNEMENLEMHNEG" regulatory complement(2475861..2475866) /regulatory_class="ribosome_binding_site" /gene="purF" /locus_tag="STM2362" /note="putative RBS for purF; RegulonDB:STMS1H002490" gene complement(2475890..2476455) /gene="cvpA" /locus_tag="STM2363" /db_xref="GeneID:1253885" CDS complement(2475890..2476378) /gene="cvpA" /locus_tag="STM2363" /note="similar to E. coli membrane protein required for colicin V production (AAC75373.1); Blastp hit to AAC75373.1 (162 aa), 96% identity in aa 1 - 161" /codon_start=1 /transl_table=11 /product="colicin V production protein" /protein_id="NP_461305.1" /db_xref="GI:16765690" /db_xref="GeneID:1253885" /translation="MVWIDYAIIAVIAFSCLVSLIRGFVREALSLVTWGCAFFVASHY YTYLSVWFTGFEDELVRNGIAIAVLFIATLIVGAIVNFVIGQLVEKTGLSGTDRVLGI CFGALRGALIVAAILFFLDTFTGLSKSEDWSKSQLIPQFSFIIRWFFDYLQSSSSFLP RT" regulatory complement(2476384..2476389) /regulatory_class="ribosome_binding_site" /gene="cvpA" /locus_tag="STM2363" /note="putative RBS for cvpA; RegulonDB:STMS1H002491" regulatory complement(2476429..2476437) /regulatory_class="minus_10_signal" /gene="cvpA" /locus_tag="STM2363" /note="putative -10_signal for cvpA; RegulonDB:STMLTH004539" protein_bind complement(2476433..2476449) /gene="cvpA" /locus_tag="STM2363" /note="putative binding site for PurR, RegulonDB: STMS1H000346" /bound_moiety="PurR" regulatory complement(2476447..2476455) /regulatory_class="minus_35_signal" /gene="cvpA" /locus_tag="STM2363" /note="putative -35_signal for cvpA; RegulonDB:STMLTH004539" gene complement(2476689..2477376) /gene="dedD" /locus_tag="STM2364" /db_xref="GeneID:1253886" CDS complement(2476689..2477363) /gene="dedD" /locus_tag="STM2364" /note="similar to E. coli putative lipoprotein (AAC75374.1); Blastp hit to AAC75374.1 (211 aa), 82% identity in aa 1 - 211" /codon_start=1 /transl_table=11 /product="cell division protein DedD" /protein_id="NP_461306.1" /db_xref="GI:16765691" /db_xref="GeneID:1253886" /translation="MASKFQNRLVGTIVLVALGVIVLPGLLDGQKKHYQDEFAAIPLV PKPGDRDEPDMMPAATQALPTQPPEGAAEEVRAGDAAAPSLDPSRMASNNVELDPIPV ETPKPKPVEKPKPQPKPQQPVVAASTPTPAPQPVADDKPAPTGKAYVVQLGALKNADK VNEIVGKLRSAGFRVYTSPSTPVQGKITRILVGPDASKDKMKGSLGELKQISGLSGVV MGYSPN" gene complement(2477353..2478638) /gene="folC" /locus_tag="STM2365" /db_xref="GeneID:1253887" CDS complement(2477353..2478621) /gene="folC" /locus_tag="STM2365" /EC_number="6.3.2.12" /EC_number="6.3.2.17" /note="multifunctional; contains formylTHF polyglutamate synthase activity; similar to E. coli dihydrofolate:folylpolyglutamate synthetase; dihydrofolate synthetase (AAC75375.1); Blastp hit to AAC75375.1 (422 aa), 87% identity in aa 4 - 422" /codon_start=1 /transl_table=11 /product="bifunctional tetrahydrofolate synthase/dihydrofolate synthase" /protein_id="NP_461307.1" /db_xref="GI:16765692" /db_xref="GeneID:1253887" /translation="MKNKSIPQAASPLASWLSYLENLHSKSIDLGLERVSQVAARLDI LKPAPFVFTVAGTNGKGTTCRTLESVLIAAGYRVGVYSSPHLVRYTERVRVQGKELAE SAHTASFAEIEAARGDISLTYFEYGTLSALWLFKQANLDVVILEVGLGGRLDATNIVD ADVAVITSIALDHTDWLGPDRESIGREKAGIFRAEKPAIVGEPEMPATIADVAQETGA LLRRRGVDWRYEVTATHWAFTDGDGTLAGLPLPQVPQPNAATALAALRASRLNIDEQA IRDGIAQATLPGRFQIVSESPRVIFDVAHNPHAAEYLTGRLKMLPKRGRVLAVIGMLH DKDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVAQAWQAAIDAA QPEDTVLVCGSFHTVAHVMEVIDAGRIGGE" regulatory complement(2477371..2477376) /regulatory_class="ribosome_binding_site" /gene="dedD" /locus_tag="STM2364" /note="putative RBS for dedD; RegulonDB:STMS1H002492" regulatory complement(2478633..2478638) /regulatory_class="ribosome_binding_site" /gene="folC" /locus_tag="STM2365" /note="putative RBS for folC; RegulonDB:STMS1H002493" gene complement(2478689..2479694) /gene="accD" /locus_tag="STM2366" /db_xref="GeneID:1253888" CDS complement(2478689..2479603) /gene="accD" /locus_tag="STM2366" /EC_number="6.4.1.2" /note="similar to E. coli acetylCoA carboxylase, carboxytransferase component, beta subunit (AAC75376.1); Blastp hit to AAC75376.1 (304 aa), 98% identity in aa 1 - 304" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase subunit beta" /protein_id="NP_461308.1" /db_xref="GI:16765693" /db_xref="GeneID:1253888" /translation="MSWIERIKSNITPTRKASIPEGVWTKCDSCGQVLYRAELERNLE VCPKCDHHMRMSARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKET GEKDALVVMKGTLHGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLVCFS ASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNI AEPKALIGFAGPRVIEQTVREKLPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAK LMNLPAPNPDAPREGVVVPPAPDQESEA" regulatory complement(2479616..2479621) /regulatory_class="ribosome_binding_site" /gene="accD" /locus_tag="STM2366" /note="putative RBS for accD; RegulonDB:STMS1H002494" regulatory complement(2479667..2479675) /regulatory_class="minus_10_signal" /gene="accD" /locus_tag="STM2366" /note="putative -10_signal for accD; RegulonDB:STMLTH004540" regulatory complement(2479686..2479694) /regulatory_class="minus_35_signal" /gene="accD" /locus_tag="STM2366" /note="putative -35_signal for accD; RegulonDB:STMLTH004540" gene complement(2479753..2480427) /gene="dedA" /locus_tag="STM2367" /db_xref="GeneID:1253889" CDS complement(2479753..2480412) /gene="dedA" /locus_tag="STM2367" /note="similar to E. coli orf, hypothetical protein (AAC75377.1); Blastp hit to AAC75377.1 (219 aa), 96% identity in aa 1 - 219" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461309.1" /db_xref="GI:16765694" /db_xref="GeneID:1253889" /translation="MDLIYFIIDFILHIDVHLAELVAEYGVWVYAILFLILFCETGLV VTPFLPGDSLLFVAGALASLETNDLNVHVMVALMLIAAIVGDAVNYTIGRLFGEKLFS NPNSKIFRRSYLDKTHQFYEKHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYN VIGALLWVLLFTYAGYFFGTIPLIQDNLKLLIVGIIVVSILPGVIEIVRHKRAASRAA K" regulatory complement(2480422..2480427) /regulatory_class="ribosome_binding_site" /gene="dedA" /locus_tag="STM2367" /note="putative RBS for dedA; RegulonDB:STMS1H002495" gene complement(2480461..2481290) /gene="truA" /locus_tag="STM2368" /db_xref="GeneID:1253890" CDS complement(2480461..2481273) /gene="truA" /locus_tag="STM2368" /EC_number="4.2.1.70" /note="similar to E. coli pseudouridylate synthase I (AAC75378.1); Blastp hit to AAC75378.1 (270 aa), 96% identity in aa 1 - 270" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine(38-40) synthase TruA" /protein_id="NP_461310.1" /db_xref="GI:16765695" /db_xref="GeneID:1253890" /translation="MSGQQSSAVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALS QVANEPINVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKT VPDDFHARFSATARRYRYIIYNHRLRPAVLAKGVTHYYEPLDAERMHRAAQCLLGEND FTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLLEVGAHN QPESWIAELLAARDRTLAAATAKAEGLYLVAVDYPDRFDLPKPPMGPLFLAD" gene complement(2481273..2482301) /gene="usg" /locus_tag="STM2369" /db_xref="GeneID:1253891" CDS complement(2481273..2482286) /gene="usg" /locus_tag="STM2369" /note="similar to E. coli putative PTS system enzyme II A component (AAC75379.1); Blastp hit to AAC75379.1 (337 aa), 89% identity in aa 1 - 337" /codon_start=1 /transl_table=11 /product="putative aspartate-semialdehyde dehydrogenase" /protein_id="NP_461311.1" /db_xref="GI:16765696" /db_xref="GeneID:1253891" /translation="MSEGWNIAILGATGAVGEALLETLAERQFPVGEIYALARHESAG EHLRFGGKSVIVQDAADFDWTQAQLAFFVAGAEASAAWIDDATNAGCLVIDSSGLFAL EPDVPLVVPEVNPYVLADYRNRNVIAVADSLTSQLLAALKPLIDQGGLSRIAVTSMLS ASAQGKKAVDALAGQSAKLLNGIPIDEDDFFGRQLAFNMLPLLPDREGSVRQERRIVD EVRKILQDDGVMISASVVQSPVFYGHAQMVSFEALRPLAAEEAREAFSRGEDIVLSEE TDYPTQVGDASGNPQLSIGCVHNDYGMPEQIQFWSVADNVRFGGALMAVKIAEKLVQE YLY" regulatory complement(2481285..2481290) /regulatory_class="ribosome_binding_site" /gene="truA" /locus_tag="STM2368" /note="putative RBS for truA; RegulonDB:STMS1H002496" regulatory complement(2482296..2482301) /regulatory_class="ribosome_binding_site" /gene="usg" /locus_tag="STM2369" /note="putative RBS for usg; RegulonDB:STMS1H002497" gene complement(2482354..2483504) /gene="pdxB" /locus_tag="STM2370" /db_xref="GeneID:1253892" CDS complement(2482354..2483490) /gene="pdxB" /locus_tag="STM2370" /EC_number="1.1.1.-" /note="similar to E. coli erythronate-4-phosphate dehydrogenase (AAC75380.1); Blastp hit to AAC75380.1 (378 aa), 88% identity in aa 1 - 377" /codon_start=1 /transl_table=11 /product="4-phosphoerythronate dehydrogenase PdxB" /protein_id="NP_461312.1" /db_xref="GI:16765697" /db_xref="GeneID:1253892" /translation="MKILVDENMPYARELFSRLGEVKAVPGRPIPVEELNHADALMVR SVTKVNESLLSGTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSA LLMLAERDGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRT LDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALL ARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIGTSHIAGYTLEGKARGTTQVFEAYSA FIGREQRVALETLLPAPEFGRITLHGPLDQPTLKRLAHLVYDVRRDDAPLRKVAGIPG EFDKLRKNYLERREWSSLYVMCDDETAAALLCKLGFNAVHHPAH" regulatory complement(2483499..2483504) /regulatory_class="ribosome_binding_site" /gene="pdxB" /locus_tag="STM2370" /note="putative RBS for pdxB; RegulonDB:STMS1H002498" gene 2483580..2484595 /gene="flk" /locus_tag="STM2371" /db_xref="GeneID:1253893" regulatory 2483580..2483585 /regulatory_class="ribosome_binding_site" /gene="flk" /locus_tag="STM2371" /note="putative RBS for flk; RegulonDB:STMS1H002499" CDS 2483594..2484595 /gene="flk" /locus_tag="STM2371" /note="Couples flagellar P- and L-ring assembly to flagellar morphogenesis; Flk (gi|1930001)" /codon_start=1 /transl_table=11 /product="flagella biosynthesis regulator" /protein_id="NP_461313.1" /db_xref="GI:16765698" /db_xref="GeneID:1253893" /translation="MHPISGAPAQPPGEGRNPLSAASEQPLSMQQRTVLERLITRLIS LTQQQSAEVWAGMKHDLGIKNDAPLLSRHFPAAEQNLTQRLGVAQQNHANRQVLSQLT ELLGVGNNRQAVSDFIRQQYGQTALSQLTPDQLKNVLTLLQQGQLSIPQPQQRPATDR PLLPAEHNTLNQLVTKLAAATGESNKLIWQSMLELSGVKSGELIPAKQFTHLATWLQA RQTLSLQHAPTLHTLQAALKQPLEPDELTAIKEYAQHTYQIQPQTVLTTAQVQDLLNH IFLRRVEREADELEPLSIQPIYRPFAPMIETVKNLSARPGLLFIALIIVLALFWLVS" gene complement(2484592..2485782) /locus_tag="STM2372" /db_xref="GeneID:1253894" CDS complement(2484592..2485770) /locus_tag="STM2372" /note="similar to E. coli putative transport protein (AAC75382.1); Blastp hit to AAC75382.1 (392 aa), 88% identity in aa 1 - 392" /codon_start=1 /transl_table=11 /product="arabinose transporter" /protein_id="NP_461314.1" /db_xref="GI:16765699" /db_xref="GeneID:1253894" /translation="MTAVSQKTTTPSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHH ELGYSNTMVGIAVGIQFFATVLTRGYAGRLADQYGAKRSALQGMLACGLAGAAWLLAA LLPVSAPVKFALLIVGRLILGFGESQLLTGTLTWGLGLVGPTRSGKVMSWNGMAIYGA LAAGAPLGLLIHSHFGFAALAGTTMVLPLLAWAFNGTVRKVPAYTGERPSLWSVVGLI WKPGLGLALQGVGFAVIGTFISLYFVSNGWTMAGFTLTAFGGAFVLMRILFGWMPDRF GGVKVAVVSLLVETAGLLLLWLAPTAWIALVGAALTGAGCSLIFPALGVEVVKRVPAQ VRGTALGGYAAFQDISYGVTGPLAGMLATSYGYPSVFLAGAISAVVGILVTILSFRRG " regulatory complement(2485777..2485782) /regulatory_class="ribosome_binding_site" /locus_tag="STM2372" /note="putative RBS for STM2372; RegulonDB:STMS1H002500" gene complement(2485950..2486331) /locus_tag="STM2373" /db_xref="GeneID:1253895" CDS complement(2485950..2486324) /locus_tag="STM2373" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461315.1" /db_xref="GI:16765700" /db_xref="GeneID:1253895" /translation="MAKEWFTVKECLGLPGFPGSEPAVRERLYKYSEGKEGVRRKRVK SKAEEFHISVFPLYVHRYLDDSGEEPTPEPISLQEAEPEDIWEMMFRLLTPEQRKQVT GRFKVRGMKAVFPFLFDDTPPR" regulatory complement(2486326..2486331) /regulatory_class="ribosome_binding_site" /locus_tag="STM2373" /note="putative RBS for STM2373; RegulonDB:STMS1H002501" gene 2486491..2486745 /locus_tag="STM2374" /db_xref="GeneID:1253896" regulatory 2486491..2486496 /regulatory_class="ribosome_binding_site" /locus_tag="STM2374" /note="putative RBS for STM2374; RegulonDB:STMS1H002502" CDS 2486497..2486745 /locus_tag="STM2374" /note="similar to E. coli regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu (AAC76220.1); Blastp hit to AAC76220.1 (92 aa), 50% identity in aa 1 - 73" /codon_start=1 /transl_table=11 /product="DNA-binding protein" /protein_id="NP_461316.1" /db_xref="GI:16765701" /db_xref="GeneID:1253896" /translation="MEPKSQDWHRADIKSALEKRGITLRDLSRQAGLSPDSLRNVFTR SWPRAERIIADALGITPKEIWPSRYDDMQIKNDADIAE" gene 2486906..2487282 /locus_tag="STM2375" /db_xref="GeneID:1253897" regulatory 2486906..2486911 /regulatory_class="ribosome_binding_site" /locus_tag="STM2375" /note="putative RBS for STM2375; RegulonDB:STMS1H002503" CDS 2486914..2487282 /locus_tag="STM2375" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461317.1" /db_xref="GI:16765702" /db_xref="GeneID:1253897" /translation="MSWDKRMAVNYAKTHAGSHSQGRCAEFTRKAIQAGGITLGHTYH AKDYGPMLRSAGFTAIGTYEMPREGDVIIIQPYAGGNPSGHMAIYDGTEWYSDFKQRD MWAGPGYRAARPSYTIYRKN" gene 2487274..2487800 /locus_tag="STM2376" /db_xref="GeneID:1253898" regulatory 2487274..2487279 /regulatory_class="ribosome_binding_site" /locus_tag="STM2375" /note="putative RBS for STM2376; RegulonDB:STMS1H002504" CDS 2487282..2487800 /locus_tag="STM2376" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461318.1" /db_xref="GI:16765703" /db_xref="GeneID:1253898" /translation="MKTFSLVALILLLCSCSAPHHDSTQAVKQFYTSWMTTFTNDVNT PDDTTALMQRYVAKEVIHRLALIQSLYEQEIVGADYFMYAQDYAPEWIPQLRVGKAHP FLGGEKVDVLLATESTPIHLEVYTRWEEGRWKIYRVRDADRGYEQPIYDAGAITQAEA WSAKVAPEYKKH" gene complement(2487867..2488528) /locus_tag="STM2377" /db_xref="GeneID:1253899" CDS complement(2487867..2488523) /locus_tag="STM2377" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461319.1" /db_xref="GI:16765704" /db_xref="GeneID:1253899" /translation="MPTNTLDKIRHSLSCVAVLFGLFGIFVFASFSPSYAWLYLGGLA APFIYSIVFVYAIAAWSIYSKYYPFLSLGRLSFVECFVPALALVCLTVLYNAFSGPEP WMAELSRQFFLHKFLNTLAMCFLAPVAEEIIFRGFLLNSSIGWGRYSRASGIIITSLA FAFMHTQYLFAVTFVYLFVFSSILCVVRMRSRGLMIPIILHILNNAWVVFGLLFSATE " regulatory complement(2488523..2488528) /regulatory_class="ribosome_binding_site" /locus_tag="STM2377" /note="putative RBS for STM2377; RegulonDB:STMS1H002505" gene complement(2488621..2489845) /gene="fabB" /locus_tag="STM2378" /db_xref="GeneID:1253900" CDS complement(2488621..2489835) /gene="fabB" /locus_tag="STM2378" /EC_number="2.3.1.41" /note="similar to E. coli 3-oxoacyl-[acyl-carrier-protein] synthase I (AAC75383.1); Blastp hit to AAC75383.1 (406 aa), 96% identity in aa 1 - 404" /codon_start=1 /transl_table=11 /product="beta-ketoacyl-[acyl-carrier-protein] synthase I" /protein_id="NP_461320.1" /db_xref="GI:16765705" /db_xref="GeneID:1253900" /translation="MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDAGM RSQVWGNVKLDTTGLIDRKVVRFMSDASIYAYLSMEQAVADAGLAPEVYQNNPRVGLI AGSGGGSPKFQVFGADAMRSPRGLKAVGPYVVTKAMASGVSACLATPFKIYGVNYSIS SACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKA SRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG AVRCMQMAMHGVDTPIDYLNSHGTSTPVGDVKELGAIREVFGDNSPAISATKAMTGHS LGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTERELTTVMSNSFGF GGTNATLVMRKL" regulatory complement(2489840..2489845) /regulatory_class="ribosome_binding_site" /gene="fabB" /locus_tag="STM2378" /note="putative RBS for fabB; RegulonDB:STMS1H002506" gene 2489927..2491995 /locus_tag="STM2379" /db_xref="GeneID:1253901" regulatory 2489927..2489932 /regulatory_class="ribosome_binding_site" /locus_tag="STM2379" /note="putative RBS for STM2379; RegulonDB:STMS1H002507" CDS 2489935..2491995 /locus_tag="STM2379" /note="similar to E. coli putative peptidase (AAC75384.1); Blastp hit to AAC75384.1 (688 aa), 79% identity in aa 1 - 686" /codon_start=1 /transl_table=11 /product="putative peptidase" /protein_id="NP_461321.3" /db_xref="GI:1109557690" /db_xref="GeneID:1253901" /translation="MRHQAHIVKIAIPPVRRVTYVKQYAIQPATLEFNAEGTPVSRDF DDVYFSNDNGLEETRYVFLGGNRLAERFPVHSHPLFIVAESGFGTGLNFLTLWQAFDS FRSAHPQATLQRLHFISFEKFPLTRDDLALAHQHWPELAPWAEQLQAQWPLPLPGCHR LLLDRGRVTLDLWFGDINELTDQLDATLNQTVDAWFLDGFAPAKNPDMWTPNLFNAMA RLARPGATLATFTSAGFVRRGLQEAGFTMQKRKGFGRKREMLCGVMEQHLMPTLSAPW FYRSGSEKRETAIIGGGIASALLSLALLRRGWQVTLYCADDQPAQGASGNRQGALYPL LSKHDAAINRFFPTAFTFARRLYDALPVSFDHDWCGVTQLGWDEKSQQKIAQMLSLAL PAGLASALNAEEAEQAVGVTTRCGGITYPAGGWLCPEQLTRAVIALATEQGLQTRFRH TLTSLVAQESRWQLRFTSGETASHETVVLANGHQINRFDQTQPLPVYAVGGQVSHIPT TPALSALRQVLCYDGYLTPQNPHNQQHCIGASYHRGDESTVWREEDQRQNRQRLLDCF PDAKWATEVDVSGNSARCGVRCATRDHLPMVGNVPDYHATLTHYADLADNKTSAAPAP VYPGLFMLGALGSRGLCSAPLCAEILAAQMSNEPIPLDAGTLAALNPNRLWVRKLLKG KAVK" gene complement(2492047..2492333) /gene="yfcL" /locus_tag="STM2380" /db_xref="GeneID:1253902" CDS complement(2492047..2492322) /gene="yfcL" /locus_tag="STM2380" /note="similar to E. coli orf, hypothetical protein (AAC75385.1); Blastp hit to AAC75385.1 (92 aa), 85% identity in aa 1 - 91" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461322.1" /db_xref="GI:16765707" /db_xref="GeneID:1253902" /translation="MIAEFESRILALIDDMVEHASDDELFASGYLRGHLTLAIAELES GDDHSVEAVYANVSQSLEKAIGAGELSPRDQALVKAMWDNLFDKAKQ" regulatory complement(2492328..2492333) /regulatory_class="ribosome_binding_site" /gene="yfcL" /locus_tag="STM2380" /note="putative RBS for yfcL; RegulonDB:STMS1H002508" gene complement(2492355..2492921) /gene="yfcM" /locus_tag="STM2381" /db_xref="GeneID:1253903" CDS complement(2492355..2492903) /gene="yfcM" /locus_tag="STM2381" /note="similar to E. coli putative transporting ATPase (AAC75386.1); Blastp hit to AAC75386.1 (182 aa), 92% identity in aa 1 - 182" /codon_start=1 /transl_table=11 /product="elongation factor P hydroxylase" /protein_id="NP_461323.1" /db_xref="GI:16765708" /db_xref="GeneID:1253903" /translation="MNNTHHYEQLIEIFNGCFAEEFNTRLIKGDDEPIYLPADAQVPY HRIVFAHGFYASALHEISHWCIAGKARRELVDFGYWYCPDGRDAQTQSQFEDVEVKPQ AFDWLFCVAAGYPFNVSCDNLEGDIEPDRVAFQRRVHAQVMAYLEQGIPERPARFIKA LQNYYHTPELKAEQFPWPEALN" gene complement(2492903..2493732) /gene="yfcA" /locus_tag="STM2382" /db_xref="GeneID:1253904" CDS complement(2492903..2493712) /gene="yfcA" /locus_tag="STM2382" /note="similar to E. coli putative structural protein (AAC75387.1); Blastp hit to AAC75387.1 (269 aa), 90% identity in aa 1 - 269" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461324.1" /db_xref="GI:16765709" /db_xref="GeneID:1253904" /translation="MDNFYDLFMVSPLLLVVLFFVAVLAGFIDSIAGGGGLLTIPALM AAGMSPANALATNKLQACGGSLSSSLYFIRRKVVNLAEQKLNILMTFIGSMSGALLVQ HVQADILRQILPILVIFIGLYFLLMPKLGEEDRQRRLYGLPFALIAGGCVGFYDGFFG PAAGSFYALAFVTLCGYNLAKSTAHAKVLNATSNVGGLLLFIIGGKVIWATGFVMLVG QFLGARMGSRLVLSKGQKLIRPMIVIVSAVMSARLLYDSHGQEILHWLGMN" regulatory complement(2492916..2492921) /regulatory_class="ribosome_binding_site" /gene="yfcM" /locus_tag="STM2381" /note="putative RBS for yfcM; RegulonDB:STMS1H002509" gene complement(2493712..2494546) /gene="mepA" /locus_tag="STM2383" /db_xref="GeneID:1253905" CDS complement(2493712..2494536) /gene="mepA" /locus_tag="STM2383" /note="similar to E. coli murein DD-endopeptidase, penicillin-insensitive (AAC75388.1); Blastp hit to AAC75388.1 (274 aa), 89% identity in aa 1 - 274" /codon_start=1 /transl_table=11 /product="penicillin-insensitive murein endopeptidase" /protein_id="NP_461325.1" /db_xref="GI:16765710" /db_xref="GeneID:1253905" /translation="MKKTAIALLAWFVSSASLAATPWQKITHPVPGAAQSIGSFANGC IIGADTLPVQSDNYQVMRTDQRRYFGHPDLVMFIQRLSHQAQQRGLGTVLIGDMGMPA GGRFNGGHASHQTGLDVDIFLQLPKTRWSQAQLLRPQALDLVSRDGKHVVPSRWSSDI ASLIKLAAQDNDVTRIFVNPAIKQQLCLDAGNDRDWLRKVRPWFQHRAHMHVRLRCPA DSLECEDQPLPPPGDGCGAELQSWFEPPKPGTTKPEKKTPPPLPPSCQALLDEHVL" regulatory complement(2493727..2493732) /regulatory_class="ribosome_binding_site" /gene="yfcA" /locus_tag="STM2382" /note="putative RBS for yfcA; RegulonDB:STMS1H002510" gene complement(2494540..2495636) /gene="aroC" /locus_tag="STM2384" /db_xref="GeneID:1253906" CDS complement(2494540..2495625) /gene="aroC" /locus_tag="STM2384" /EC_number="4.2.3.5" /note="similar to E. coli chorismate synthase (AAC75389.1); Blastp hit to AAC75389.1 (361 aa), 95% identity in aa 1 - 361" /codon_start=1 /transl_table=11 /product="chorismate synthase" /protein_id="NP_461326.1" /db_xref="GI:16765711" /db_xref="GeneID:1253906" /translation="MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHD LDRRRPGTSRYTTQRREPDQVKILSGVFDGVTTGTSIGLLIENTDQRSQDYSAIKDVF RPGHADYTYEQKYGLRDYRGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQM GDIPLEIKDWRQVELNPFFCPDADKLDALDELMRALKKEGDSIGAKVTVMASGVPAGL GEPVFDRLDADIAHALMSINAVKGVEIGEGFNVVALRGSQNRDEITAQGFQSNHAGGI LGGISSGQHIVAHMALKPTSSITVPGRTINRAGEEVEMITKGRHDPCVGIRAVPIAEA MLAIVLMDHLLRHRAQNADVKTEIPRW" regulatory complement(2494541..2494546) /regulatory_class="ribosome_binding_site" /gene="mepA" /locus_tag="STM2383" /note="putative RBS for mepA; RegulonDB:STMS1H002511" regulatory complement(2495631..2495636) /regulatory_class="ribosome_binding_site" /gene="aroC" /locus_tag="STM2384" /note="putative RBS for aroC; RegulonDB:STMS1H002512" gene complement(2495661..2496602) /gene="yfcB" /locus_tag="STM2385" /db_xref="GeneID:1253907" CDS complement(2495661..2496593) /gene="yfcB" /locus_tag="STM2385" /EC_number="2.1.1.72" /note="similar to E. coli putative adenine-specific methylase (AAC75390.1); Blastp hit to AAC75390.1 (421 aa), 94% identity in aa 112 - 421" /codon_start=1 /transl_table=11 /product="ribosomal protein L3 N(5)-glutamine methyltransferase" /protein_id="NP_461327.1" /db_xref="GI:16765712" /db_xref="GeneID:1253907" /translation="MDKIFVDEAVSELHTIQDMLRWAVSRFSAANIWYGHGTDNPWDE AVQLVLPSLYLPLDIPEDMRTARLTSSEKHRIVERVIRRINERIPVAYLTNKAWFCGH EFYVDERVLVPRSPIGELINNHFAGLISQQPKYILDMCTGSGCIAIACAYAFPDAEVD AVDISPDALAVAEHNIEEHGLIHHVTPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSD LPNEYRHEPELGLASGTDGLKLTRRILGNAPDYLSDDGVLICEVGNSMVHLMEQYPDV PFTWLEFDNGGDGVFMLTKAQLLAAREHFNIYKD" regulatory complement(2496597..2496602) /regulatory_class="ribosome_binding_site" /gene="yfcB" /locus_tag="STM2385" /note="putative RBS for yfcB; RegulonDB:STMS1H002513" gene 2496745..2497310 /gene="yfcN" /locus_tag="STM2386" /db_xref="GeneID:1253908" regulatory 2496745..2496750 /regulatory_class="ribosome_binding_site" /gene="yfcN" /locus_tag="STM2386" /note="putative RBS for yfcN; RegulonDB:STMS1H002514" CDS 2496759..2497310 /gene="yfcN" /locus_tag="STM2386" /note="similar to E. coli orf, hypothetical protein (AAC75391.1); Blastp hit to AAC75391.1 (183 aa), 93% identity in aa 1 - 183" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461328.1" /db_xref="GI:16765713" /db_xref="GeneID:1253908" /translation="MKKKTSLSEEDQALFRQLMVGTRKIKQDTIVHRPLRKKITEVPT RRLIQEQADASHYFSDEFQPLLNTEGPVKYVREDVSHFELKKMRRGDYSPELFLDLHG LTQLQAKQELGALIAACRREHIFCACVMHGHGKHILKQQTPLWLAQHPHVMAFHQAPK EYGGDAALLVLIEVEEWQPPELP" gene complement(2497410..2497905) /gene="sixA" /locus_tag="STM2387" /db_xref="GeneID:1253909" CDS complement(2497410..2497895) /gene="sixA" /locus_tag="STM2387" /EC_number="3.1.3.-" /note="similar to E. coli orf, hypothetical protein (AAC75400.1); Blastp hit to AAC75400.1 (161 aa), 89% identity in aa 1 - 161" /codon_start=1 /transl_table=11 /product="phosphohistidine phosphatase SixA" /protein_id="NP_461329.1" /db_xref="GI:16765714" /db_xref="GeneID:1253909" /translation="MQVFIMRHGDAALDAASDSVRPLTPCGCDESRLMANWLKGQKVD IERVLVSPFLRAEQTLDVVGDCMNLPAQVDVLPELTPCGDVGLVSAYLQALANEEIGS VLVISHLPLVGYLVSELCPGETPPMFTTSAIANVTLDESGKGTFNWQMSPCNLKMAKA I" regulatory complement(2497900..2497905) /regulatory_class="ribosome_binding_site" /gene="sixA" /locus_tag="STM2387" /note="putative RBS for sixA; RegulonDB:STMS1H002515" gene complement(2498104..2500265) /gene="yfcX" /locus_tag="STM2388" /db_xref="GeneID:1253910" CDS complement(2498104..2500251) /gene="yfcX" /locus_tag="STM2388" /EC_number="1.1.1.35" /EC_number="4.2.1.17" /note="similar to E. coli putative enzyme (AAC75401.1); Blastp hit to AAC75401.1 (714 aa), 86% identity in aa 1 - 712" /codon_start=1 /transl_table=11 /product="multifunctional fatty acid oxidation complex subunit alpha" /protein_id="NP_461330.1" /db_xref="GI:16765715" /db_xref="GeneID:1253910" /translation="MTTTSAFMLNVRLDNVAVVAIDVPGEKVNTLKAEFATQVRAILK QIRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPV PVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVG VSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVELAKKERLAQRTLPVRERI LAGPLGRALLFRLVRKKTAQKTQGNYPATERIIDVIETGLAQGSSSGYDAEARAFGEL AMTPQSQALRAIFFASTEVKKDPGSDAPPGPLNSVGILGGGLMGGGIAWVTACKGGLP VRIKDINTQGINHALKYSWDLLETKVRRRHIKASERDKQLALISGSTDYRGFSHRDLV IEAVFEDLPLKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAANAARPEQVIGLHFFSP VEKMPLVEVIPHASTSAQTIATTVKLAKKQGKTPIVVSDKAGFYVNRILAPYINEAIR MLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGERFSAPANVV ASILNDDRKGRKNGRGFYLYGEKGRKSKKQVDPAIYKLIGVQGQSRLSAQQVAERCVM LMLNEAARCFDEKVIRSARDGDIGAVFGIGFPPFLGGPFRYMDALGPGEMVATLQRLA ALYGPRYAPCEQLVRMAERREHFWTNGETDQGN" gene complement(2500251..2501573) /gene="yfcY" /locus_tag="STM2389" /db_xref="GeneID:1253911" CDS complement(2500251..2501561) /gene="yfcY" /locus_tag="STM2389" /EC_number="2.3.1.16" /note="similar to E. coli putative acyltransferase (AAC75402.1); Blastp hit to AAC75402.1 (436 aa), 93% identity in aa 1 - 436" /codon_start=1 /transl_table=11 /product="3-ketoacyl-CoA thiolase" /protein_id="NP_461331.2" /db_xref="GI:1109557691" /db_xref="GeneID:1253911" /translation="MRQALPLVTRQGDRIAIVSGLRTPFARQATAFHGIPAVDLGKMV VGELLARSEIPADAIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATS FQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKALARVLVDVNKARTTRQRLTLF SRLRLRDLLPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWA EGKLAEEVMTTYVPPYKNPFAEDNNIRGASTLADYAKLRPAFDRKHGSVTAANSTPLT DGAAAVILMTESRAKELGLRPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTM ADLTLFDMHEAFAAQTLANLQLLGSERFAREVLGCAQATGEVDDAKFNVLGGSIAYGH PFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLEAE" regulatory complement(2500260..2500265) /regulatory_class="ribosome_binding_site" /gene="yfcY" /locus_tag="STM2389" /note="putative RBS for yfcX; RegulonDB:STMS1H002516" regulatory complement(2501568..2501573) /regulatory_class="ribosome_binding_site" /gene="yfcY" /locus_tag="STM2389" /note="putative RBS for yfcY; RegulonDB:STMS1H002517" gene complement(2501739..2502036) /gene="yfcZ" /locus_tag="STM2390" /db_xref="GeneID:1253912" CDS complement(2501739..2502023) /gene="yfcZ" /locus_tag="STM2390" /note="similar to E. coli orf, hypothetical protein (AAC75403.1); Blastp hit to AAC75403.1 (102 aa), 93% identity in aa 9 - 102" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461332.1" /db_xref="GI:16765717" /db_xref="GeneID:1253912" /translation="MSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFATRAEAEETL AALTEKARSVESEPCQITPTFTEESEGVRLDIDFVFACEAETLIFQLGLR" regulatory complement(2502031..2502036) /regulatory_class="ribosome_binding_site" /gene="yfcZ" /locus_tag="STM2390" /note="putative RBS for yfcZ; RegulonDB:STMS1H002518" protein_bind 2502137..2502149 /note="putative binding site for OmpR, RegulonDB: STMS1H000331" /bound_moiety="OmpR" protein_bind 2502249..2502259 /note="putative binding site for OmpR, RegulonDB: STMS1H000329" /bound_moiety="OmpR" gene 2502255..2503701 /gene="fadL" /locus_tag="STM2391" /db_xref="GeneID:1253913" regulatory 2502255..2502263 /regulatory_class="minus_35_signal" /gene="fadL" /locus_tag="STM2391" /note="putative -35_signal for fadL; RegulonDB:STMLTH004541" protein_bind 2502271..2502289 /gene="fadL" /locus_tag="STM2391" /note="putative binding site for FadR, RegulonDB: STMS1H000181" /bound_moiety="FadR" regulatory 2502282..2502290 /regulatory_class="minus_10_signal" /gene="fadL" /locus_tag="STM2391" /note="putative -10_signal for fadL; RegulonDB:STMLTH004541" protein_bind 2502295..2502313 /gene="fadL" /locus_tag="STM2391" /note="putative binding site for FadR, RegulonDB: STMS1H000177" /bound_moiety="FadR" protein_bind 2502343..2502363 /gene="fadL" /locus_tag="STM2391" /note="putative binding site for CRP, RegulonDB: STMS1H000113" /bound_moiety="CRP" protein_bind 2502353..2502365 /gene="fadL" /locus_tag="STM2391" /note="putative binding site for OmpR, RegulonDB: STMS1H000325" /bound_moiety="OmpR" regulatory 2502382..2502387 /regulatory_class="ribosome_binding_site" /gene="fadL" /locus_tag="STM2391" /note="putative RBS for fadL; RegulonDB:STMS1H002519" CDS 2502388..2503701 /gene="fadL" /locus_tag="STM2391" /note="sensitivity to phage T2; similar to E. coli transport of long-chain fatty acids; sensitivity to phage T2 (AAC75404.1); Blastp hit to AAC75404.1 (448 aa), 91% identity in aa 1 - 448" /codon_start=1 /transl_table=11 /product="transport of long-chain fatty acids" /protein_id="NP_461333.1" /db_xref="GI:16765718" /db_xref="GeneID:1253913" /translation="MVMSQKTLFTKSALAVAVAIISTQAWSAGFQLNEFSSSGLGRAY SGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSRRTLDADNIAP TAWVPNVHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGA YRLNEAWSFGLGFDAVYARAKIERFAGDLGQLVAAQNPALAPVAGQIPSDTKIAHLNG NQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLPIAINRFNLPIPTATGG ATQSGYLTLNLPEMWEVSGYNRVAPQWAIHYSLAYTSWSQFQELKAKSTAGDTLFEKH EGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYA FNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF" protein_bind 2502403..2502415 /gene="fadL" /locus_tag="STM2391" /note="putative binding site for OmpR, RegulonDB: STMS1H000330" /bound_moiety="OmpR" gene complement(2503762..2504530) /gene="vacJ" /locus_tag="STM2392" /db_xref="GeneID:1253914" CDS complement(2503762..2504517) /gene="vacJ" /locus_tag="STM2392" /note="similar to E. coli lipoprotein precursor (AAC75406.1); Blastp hit to AAC75406.1 (251 aa), 94% identity in aa 1 - 251" /codon_start=1 /transl_table=11 /product="phospholipid-binding lipoprotein MlaA" /protein_id="NP_461334.1" /db_xref="GI:16765719" /db_xref="GeneID:1253914" /translation="MKLRLSALALGTTLLVGCASSGTEQQGRSDPFEGFNRTMYNFNF NVLDPYVVRPVAVAWRDYVPQPARNGLSNFTGNLEEPAIMVNYFLQGDPYQGMVHFTR FFLNTLLGMGGFIDVAGMANPKLQRVEPHRFGSTLGHYGVGYGPYMQLPFYGSFTLRE DGGDMADTLYPVLSWLTWPMSIGKWTIEGIETRAQLLDSDGLLRQSSDPYIMVREAYF QRHDFIANGGKLKPQENPNAQAIQDELKEIDSE" regulatory complement(2504525..2504530) /regulatory_class="ribosome_binding_site" /gene="vacJ" /locus_tag="STM2392" /note="putative RBS for vacJ; RegulonDB:STMS1H002520" gene 2504792..2505747 /gene="yfdC" /locus_tag="STM2393" /db_xref="GeneID:1253915" regulatory 2504792..2504797 /regulatory_class="ribosome_binding_site" /gene="yfdC" /locus_tag="STM2393" /note="putative RBS for yfdC; RegulonDB:STMS1H002521" CDS 2504806..2505747 /gene="yfdC" /locus_tag="STM2393" /note="similar to E. coli putative transport (AAC75407.1); Blastp hit to AAC75407.1 (310 aa), 87% identity in aa 1 - 304" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461335.1" /db_xref="GI:16765720" /db_xref="GeneID:1253915" /translation="MDSLNDDKINRHSSDLEVESEEKQSGKEIEVDEDRLPSRAMAIH EHIRQDGEKEMERDAMALLWSAIAAGLSMGASLLAKGIFHVQLESVPGGFLLENLGYT FGFIIVIMARQQLFTENTVTAVLPVMQNPTLSNVGLLMRLWGVVLLGNLIGTGVAAWA FEYMPIFDEETRDAFVKIGMEVMKNSPTEMFANAIISGWIIATMVWMFPAAGGAKIVV IILMTWLIALGDTTHIVVGSVEILYLVFNGTLPWSDFLWPFALPTLAGNICGGTFIFA LMSHAQIRNDMSNKRKEEARLRGERLERERKKAEKQR" gene 2505821..2505892 /gene="argW" /locus_tag="STM2394" /db_xref="GeneID:1253916" tRNA 2505821..2505892 /gene="argW" /locus_tag="STM2394" /product="tRNA-Arg" /db_xref="GeneID:1253916" gene complement(2506054..2507005) /gene="pgtE" /locus_tag="STM2395" /db_xref="GeneID:1253917" CDS complement(2506054..2506992) /gene="pgtE" /locus_tag="STM2395" /EC_number="3.4.23.49" /note="phosphoglycerate transport; outer membrane protease E precursor. (SW:PGTE_SALTY)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461336.1" /db_xref="GI:16765721" /db_xref="GeneID:1253917" /translation="MKKHAIAVMMIAVFSESVYAESALFIPDVSPDSVTTSLSVGVLN GKSRELVYDTDTGRKLSQLDWKIKNVATLQGDLSWEPYSFMTLDARGWTSLASGSGHM VDHDWMSSEQPGWTDRSIHPDTSVNYANEYDLNVKGWLLQGDNYKAGVTAGYQETRFS WTARGGSYIYDNGRYIGNFPHGVRGIGYSQRFEMPYIGLAGDYRINDFECNVLFKYSD WVNAHDNDEHYMRKLTFREKTENSRYYGASIDAGYYITSNAKIFAEFAYSKYEEGKGG TQIIDKTSGDTAYFGGDAAGIANNNYTVTAGLQYRF" regulatory complement(2507000..2507005) /regulatory_class="ribosome_binding_site" /gene="pgtE" /locus_tag="STM2395" /note="putative RBS for pgtE; RegulonDB:STMS1H002523" gene complement(2507260..2508512) /gene="pgtA" /locus_tag="STM2396" /db_xref="GeneID:1253918" CDS complement(2507260..2508507) /gene="pgtA" /locus_tag="STM2396" /note="phosphoglycerate transport; phosphoglycerate transport system transcriptional regulatory protein PGTA. (SW:PGTA_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_461337.1" /db_xref="GI:16765722" /db_xref="GeneID:1253918" /translation="MLNDECSILLIDDDVDVLDAYTQMLEQAGYRVRGFTHPFEAKEW VKADWEGIVLSDVCMPGCSGIDLMTLFHQDDDQLPILLITGHGDVPMAVDAVKKGAWD FLQKPVDPGKLLILIEDALRQRRSVIARRQYCQQTLQVELIGRSEWMNQFRQRLQQLA ETDIAVWFYGEHGTGRMTGARYLHQLGRNAKGPFVRYELTPENAGQLETFIDQAQGGT LVLSHPEYLTREQQHHLARLQSLEHRPFRLVGVGSASLVEQAAANQIAAELYYCFAMT QIACQSLSQRPDDIEPLFRHYLRKACLRLNHPVPEIAGELLKGIMRRAWPSNVRELAN AAELFAVGVLPLAETVNPQLLLQEPTPLDRRVEEYERQIITEALNIHQGRINEVAEYL QIPRKKLYLRMKKYGLSKEHYKF" gene complement(2508497..2510509) /gene="pgtB" /locus_tag="STM2397" /db_xref="GeneID:1253919" CDS complement(2508497..2510503) /gene="pgtB" /locus_tag="STM2397" /EC_number="2.7.3.-" /note="phosphoglycerate transport; phosphoglycerate transport system sensor protein PGTB. (SW:PGTB_SALTY)" /codon_start=1 /transl_table=11 /product="sensor histidine kinase" /protein_id="NP_461338.1" /db_xref="GI:16765723" /db_xref="GeneID:1253919" /translation="MKGRLLQRLRQLSISNSLRGAFLTGALLTLIVSMVSLYSWHEQS SQVRYSLDEYFPRIHSAFLIEGNLNLAVDQLNEFLLAPNTTVRLQLRTQIIQHLDKIE RLSQGLQLAERRQLAVILQDSRTLLAELDNALYNMFLVREKVSELSARIDWLHDDFTT ELNSLVQDFTWQQGTLLDQIEANQGDAAQYLQRSREVQNEQQQVYTLARIENQIVDDL RDRLNELKSGNNDGMLVETHIRYLENLKKTADENIRALDDWPSTITLRQTIDELLEIG MVKNKMPDTMRDYVAAQKALLDASRAREATLGRFRTLLEAQLGSSHQQMQTFNQRLEQ IVRVSGGLILVATLLALLLAWGLNHYFIRSRLVKRFTALNQAVVQIGLGRTDSTIPVY GRDELGRIARLLRHTLGQLNMQRRQLEQEVAERKEIEADLRAMQDELIQTAKLAVVGQ TMTTLAHEINQPLNALSMYLFTAGRAIEQGQSGQARNTLTKAEGLINRIDAIIRSLRQ FTRRAELETPLYPVDLRQTFVAAWELLAMRHQSRQGALSLPTDTVWVSGDEVRIQQVL VNVLANALDACSHDAVIAVTWQTQGEALEVYIADNGPGWPVALLPSLLKPFTTSKAVG LGIGLSISVSLMAQMKGDLRLASTLTRNACVVLQFSVTDVDDVE" regulatory complement(2508507..2508512) /regulatory_class="ribosome_binding_site" /gene="pgtA" /locus_tag="STM2396" /note="putative RBS for pgtA; RegulonDB:STMS1H002524" gene complement(2510500..2511698) /gene="pgtC" /locus_tag="STM2398" /db_xref="GeneID:1253920" CDS complement(2510500..2511693) /gene="pgtC" /locus_tag="STM2398" /note="phosphoglycerate transport; phosphoglycerate transport regulatory protein PGTC precursor. (SW:PGTC_SALTY)" /codon_start=1 /transl_table=11 /product="protein for signal transmission" /protein_id="NP_461339.1" /db_xref="GI:16765724" /db_xref="GeneID:1253920" /translation="MFGSCQAYSRELVMATTFSPSATAWIIQRWQTEPGSVMIRTLNR TSGSLEQLLDTANAENVDLILTSSPMLLQHLQEHQKLALLDSAPAASQKLVPRSIRST SVAVAVSGFGLLINRSALAARHLPPPADWQDMGLPSYQGALLMSSPSRSDTNHLMVES LLQQKGWTAGWATLLAISGNLVTISSRSFGVADKIKSGLGVAGPVIDNYANLLLNDPN LAFTYFPYSAVSPTYVAVLKNSRHADEARAFIHYLLSPKGQRILADANTGKYPVAPLS ADNPRAAQQQRLMAQPPLNYRLILKRQQLVQRMFDTAISFRLAQLKDAWRALHSAETR LKRPLPEIRALLTSVPVDAASSEDETWLAQFDNKSFAEQKMMEWQIWFLNNQRLAIHK LEELK" regulatory complement(2510504..2510509) /regulatory_class="ribosome_binding_site" /gene="pgtC" /locus_tag="STM2398" /note="putative RBS for pgtB; RegulonDB:STMS1H002525" regulatory complement(2511693..2511698) /regulatory_class="ribosome_binding_site" /gene="pgtC" /locus_tag="STM2398" /note="putative RBS for pgtC; RegulonDB:STMS1H002526" gene 2512122..2513520 /gene="pgtP" /locus_tag="STM2399" /db_xref="GeneID:1253921" regulatory 2512122..2512127 /regulatory_class="ribosome_binding_site" /gene="pgtP" /locus_tag="STM2399" /note="putative RBS for pgtP; RegulonDB:STMS1H002527" CDS 2512129..2513520 /gene="pgtP" /locus_tag="STM2399" /note="phosphoglycerate transport; phosphoglycerate transporter protein. (SW:PGTP_SALTY)" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_461340.1" /db_xref="GI:16765725" /db_xref="GeneID:1253921" /translation="MLTILKTGQSAHKVPPEKVQATYGRYRIQALLSVFLGYLAYYIV RNNFTLSTPYLKEQLDLSATQIGLLSSCMLIAYGISKGVMSSLADKASPKVFMACGLV LCAIVNVGLGFSSAFWIFAALVVFNGLFQGMGVGPSFITIANWFPRRERGRVGAFWNI SHNVGGGIVAPIVGAAFAILGSEHWQSASYIVPACVAVIFALIVLVLGKGSPRKEGLP SLEQMMPEEKVVLKTKNTAKAPENMSAWQIFCTYVLRNKNAWYISLVDVFVYMVRFGM ISWLPIYLLTVKHFSKEQMSVAFLFFEWAAIPSTLLAGWLSDKLFKGRRMPLAMICMA LIFVCLIGYWKSESLLMVTIFAAIVGCLIYVPQFLASVQTMEIVPSFAVGSAVGLRGF MSYIFGASLGTSLFGVMVDKLGWYGGFYLLMGGIVCCILFCYLSHRGALELERQRQNA LHNQDSLQLADAQ" gene complement(2513796..2514053) /locus_tag="STM2400" /db_xref="GeneID:1253922" CDS complement(2513796..2514038) /locus_tag="STM2400" /note="similar to E. coli orf, hypothetical protein (AAC75436.1); Blastp hit to AAC75436.1 (80 aa), 67% identity in aa 1 - 80" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461341.1" /db_xref="GI:16765726" /db_xref="GeneID:1253922" /translation="MIYLWTFLAISILAVSGYIGQVMGAFSAVSSFTGMVILAALIYL LNVWLQDGDDIVSGLLLFLAPACGLIIRFMVGYGKR" regulatory complement(2514048..2514053) /regulatory_class="ribosome_binding_site" /locus_tag="STM2400" /note="putative RBS for STM2400; RegulonDB:STMS1H002528" gene 2514550..2515480 /gene="ddg" /locus_tag="STM2401" /db_xref="GeneID:1253923" regulatory 2514550..2514555 /regulatory_class="ribosome_binding_site" /gene="ddg" /locus_tag="STM2401" /note="putative RBS for ddg; RegulonDB:STMS1H002529" CDS 2514560..2515480 /gene="ddg" /locus_tag="STM2401" /note="similar to E. coli putative heat shock protein (AAC75437.1); Blastp hit to AAC75437.1 (328 aa), 90% identity in aa 23 - 328" /codon_start=1 /transl_table=11 /product="lipid A biosynthesis palmitoleoyl acyltransferase" /protein_id="NP_461342.1" /db_xref="GI:16765727" /db_xref="GeneID:1253923" /translation="MFPQSKFSRAFLHPRYWLTWFGVGILWLLVQLPYPVLRFLGTRT GKLARPFLKRRESIAQKNIELCFPTLSREEREKLIAENFHSLGMALLETGMAWFWPDS RVRKWFDVDGLDNLTRAQAQNRGVMVVGVHFMSLELGGRVMGLCQPMMATYRPHNNPL MEWVQTRGRMRSNKAMIGRNNLRGIVGALKKGEAVWFAPDQDYGPKGSSFAPFFAVEN VATTNGTYVLSRLSGAAMLTVTMVRKSDNSGYRLYITPEMEGYPADENQAAAYMNKII EKEIMRAPEQYLWIHRRFKTRPLGEASLYI" gene complement(2516004..2517251) /gene="yfdZ" /locus_tag="STM2402" /db_xref="GeneID:1253924" CDS complement(2516004..2517242) /gene="yfdZ" /locus_tag="STM2402" /EC_number="2.6.1.17" /note="similar to E. coli putative aminotransferase (AAC75438.1); Blastp hit to AAC75438.1 (412 aa), 95% identity in aa 1 - 412" /codon_start=1 /transl_table=11 /product="alanine transaminase" /protein_id="NP_461343.1" /db_xref="GI:16765728" /db_xref="GeneID:1253924" /translation="MADFRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMG NPDGATPPHIVEKLCTVAQRPDTHGYSTSRGIPRLRRAISHWYQERYDVDIDPETEAI VTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVY DGWKAPSIMQVPGARDVAVEFFTLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYG TFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKI PEQYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAVRGIKA MFRADGVLPSHPKPVEASTE" regulatory complement(2517246..2517251) /regulatory_class="ribosome_binding_site" /gene="yfdZ" /locus_tag="STM2402" /note="putative RBS for yfdZ; RegulonDB:STMS1H002530" gene complement(2517963..2518944) /gene="glk" /locus_tag="STM2403" /db_xref="GeneID:1253925" CDS complement(2517963..2518928) /gene="glk" /locus_tag="STM2403" /EC_number="2.7.1.2" /note="similar to E. coli glucokinase (AAC75447.1); Blastp hit to AAC75447.1 (321 aa), 93% identity in aa 1 - 321" /codon_start=1 /transl_table=11 /product="glucokinase" /protein_id="NP_461344.1" /db_xref="GI:16765729" /db_xref="GeneID:1253925" /translation="MTKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAV VRVYLDEHSVSVEDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFT AVSMAIPMLKKEHLIQFGGGEPVDGKPIAVYGAGTGLGVAHLVHVDKRWISLPGEGGH VDFAPNSEEEAMILEILRAEIGHVSAERVLSGPGLVNLYRAIVKSDNRLPENLRPKDI TERALADSCIDCRRALSLFCVIMGRFGGDLALTMGTFGGVYIAGGIVPRFLEFFKASG FRGGFEDKGRFKDYVHGIPVYLIVHDNPGLLGSGAHLRQTLGHIL" regulatory complement(2518939..2518944) /regulatory_class="ribosome_binding_site" /gene="glk" /locus_tag="STM2403" /note="putative RBS for glk; RegulonDB:STMS1H002531" gene 2519120..2520367 /locus_tag="STM2404" /db_xref="GeneID:1253926" regulatory 2519120..2519125 /regulatory_class="ribosome_binding_site" /locus_tag="STM2404" /note="putative RBS for STM2404; RegulonDB:STMS1H002532" CDS 2519132..2520367 /locus_tag="STM2404" /note="similar to E. coli orf, hypothetical protein (AAC75448.1); Blastp hit to AAC75448.1 (418 aa), 80% identity in aa 1 - 408" /codon_start=1 /transl_table=11 /product="ion channel protein" /protein_id="NP_461345.1" /db_xref="GI:16765730" /db_xref="GeneID:1253926" /translation="MFHPRARTMLLLSLPALIIGVASSLVLIAAMKVASVFQQFLWQR LPTSIGIAYDSPFWIVGMLTLTGIVVGLIIRYSPGHAGPDPAIEPLISMPVSPSALPG LLLALIIGLAGGVSLGPEHPIMTINIALAAAFGSRLFPRITALDWTILASAGTIGALF GTPVAAALIFSQTLSGSNDIPMWDRLFAPLMAAAAGSLTTSLFFHPHFSLPIAHYTQM RLVDIASGAIVAAIAIAAGMVAVWCLPRLHELLHRLKNPVLILGIGGFILGILGVIGG PLTLFKGLDEMQQMAFSQTLGAGDYFTLAVVKLAALVIAAASGFRGGRIFPAVFIGAA LGLMLHAHVEAVPAAITVSCAILGLVLVVTRDGWLSLFMAAVVVPDTNLLPLLCIVML PAWLLLAGKPLLAANRHEP" gene complement(2520387..2522046) /locus_tag="STM2405" /db_xref="GeneID:1253927" CDS complement(2520387..2522039) /locus_tag="STM2405" /EC_number="4.1.1.1" /note="similar to E. coli acetolactate synthase III, valine sensitive, large subunit (AAC73188.1); Blastp hit to AAC73188.1 (604 aa), 24% identity in aa 37 - 505" /codon_start=1 /transl_table=11 /product="indolepyruvate decarboxylase" /protein_id="NP_461346.1" /db_xref="GI:16765731" /db_xref="GeneID:1253927" /translation="MQNPYTVADYLLDRLAGCGIGHLFGVPGDYNLQFLDHVIDHPTL RWVGCANELNAAYAADGYARMSGAGALLTTFGVGELSAINGIAGSYAEYVPVLHIVGA PCSAAQQRGELMHHTLGDGDFRHFYRMSQAISAASAILDEQNACFEIDRVLGEMLAAR RPGYIMLPADVAKKTAIPPTQALALPVHEAQSGVETAFRYHARQCLMNSRRIALLADF LAGRFGLRPLLQRWMAETPIAHATLLMGKGLFDEQHPNFVGTYSAGASSKEVRQAIED ADRVICVGTRFVDTLTAGFTQQLPAERTLEIQPYASRIGETWFNLPMAQAVSTLRELC LECAFAPPPTRSAGQPVRIDKGELTQESFWQTLQQYLKPGDIILVDQGTAAFGAAALS LPDGAEVVLQPLWGSIGYSLPAAFGAQTACPDRRVILIIGDGAAQLTIQEMGSMLRDG QAPVILLLNNDGYTVERAIHGAAQRYNDIASWNWTQIPPALNAAQQAECWRVTQAIQL AEVLERLARPQRLSFIEVMLPKADLPELLRTVTRALEARNGG" regulatory complement(2522041..2522046) /regulatory_class="ribosome_binding_site" /locus_tag="STM2405" /note="putative RBS for STM2405; RegulonDB:STMS1H002533" gene 2522205..2523217 /locus_tag="STM2406" /db_xref="GeneID:1253928" regulatory 2522205..2522210 /regulatory_class="ribosome_binding_site" /locus_tag="STM2406" /note="putative RBS for STM2406; RegulonDB:STMS1H002534" CDS 2522219..2523217 /locus_tag="STM2406" /note="similar to E. coli putative reductase (AAC76037.1); Blastp hit to AAC76037.1 (346 aa), 60% identity in aa 1 - 335" /codon_start=1 /transl_table=11 /product="L-glyceraldehyde 3-phosphate reductase" /protein_id="NP_461347.1" /db_xref="GI:16765732" /db_xref="GeneID:1253928" /translation="MIYQPDENRYHTMEYRRCGRSGVKLPAISLGLWHNFGDTTRVEN SRALLQRAFDLGITHFDLANNYGPPPGSAECNFGRILQEDFLPWRDELIISTKAGYTM WDGPYGDWGSRKYLIASLDQSLKRMGLEYVDIFYHHRPDPETPLKETMKALDHLVRHG KALYVGISNYPADLARQAIDILEDLGTPCLIHQPKYSLFERWVEDGLLALLQEKGVGS IAFSPLAGGQLTDRYLNGIPEDSRAASGSRFLKPEQITADKLEKVRRLNELAARRGQK LSQMALAWVLRNDNVTSVLIGASKPSQIEDAVGMLANRRFSAAECAEIDAILEGRF" gene 2523318..2523657 /gene="ypeC" /locus_tag="STM2407" /db_xref="GeneID:1253929" regulatory 2523318..2523323 /regulatory_class="ribosome_binding_site" /gene="ypeC" /locus_tag="STM2407" /note="putative RBS for ypeC; RegulonDB:STMS1H002535" CDS 2523331..2523657 /gene="ypeC" /locus_tag="STM2407" /note="similar to E. coli orf, hypothetical protein (AAC75449.1); Blastp hit to AAC75449.1 (108 aa), 91% identity in aa 1 - 108" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461348.1" /db_xref="GI:16765733" /db_xref="GeneID:1253929" /translation="MFRSLILAAALLAFTPLAANAGEITLLPSIKLQIGDRDDYGNYW DGGRWRDRDYWHNHYEWRKNRWWRHDNGYHRGWDKRKAYERGYREGWRDRDDHRGRGR GHKHHH" gene complement(2523718..2524969) /gene="mntH" /locus_tag="STM2408" /db_xref="GeneID:1253930" CDS complement(2523718..2524959) /gene="mntH" /locus_tag="STM2408" /note="Nramp family; manganese transport protein MNTH. (SW:MNTH_SALTY)" /codon_start=1 /transl_table=11 /product="divalent metal cation transporter" /protein_id="NP_461349.1" /db_xref="GI:16765734" /db_xref="GeneID:1253930" /translation="MTDNRVENSSGRAARKLRLALMGPAFIAAIGYIDPGNFATNIQA GASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAE IIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL LLFVAAAYIVELFFSQPDMAQLGKGMVIPALPNPEAVFLAAGVLGATIMPHVIYLHSS LTQHLHGGTRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGIADLDQAY LTLEPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFVRFHIPLWVRRTITMLP SFIVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSNATLMGELVNTRRVKQVGWI IVVLVVALNIWLLVGTVMGLS" regulatory complement(2524964..2524969) /regulatory_class="ribosome_binding_site" /gene="mntH" /locus_tag="STM2408" /note="putative RBS for mntH; RegulonDB:STMS1H002536" protein_bind 2525169..2525189 /note="putative binding site for CRP, RegulonDB: STMS1H000045" /bound_moiety="CRP" gene 2525190..2526504 /gene="nupC" /locus_tag="STM2409" /db_xref="GeneID:1253931" regulatory 2525190..2525198 /regulatory_class="minus_35_signal" /gene="nupC" /locus_tag="STM2409" /note="putative -35_signal for nupC; RegulonDB:STMLTH004542" regulatory 2525214..2525222 /regulatory_class="minus_10_signal" /gene="nupC" /locus_tag="STM2409" /note="putative -10_signal for nupC; RegulonDB:STMLTH004542" protein_bind 2525222..2525234 /gene="nupC" /locus_tag="STM2409" /note="putative binding site for CRP, RegulonDB: STMS1H000097" /bound_moiety="CRP" regulatory 2525291..2525296 /regulatory_class="ribosome_binding_site" /gene="nupC" /locus_tag="STM2409" /note="putative RBS for nupC; RegulonDB:STMS1H002537" CDS 2525302..2526504 /gene="nupC" /locus_tag="STM2409" /note="similar to E. coli permease of transport system for 3 nucleosides (AAC75452.1); Blastp hit to AAC75452.1 (400 aa), 98% identity in aa 1 - 400" /codon_start=1 /transl_table=11 /product="nucleoside permease" /protein_id="NP_461350.1" /db_xref="GI:16765735" /db_xref="GeneID:1253931" /translation="MDRVLHFVLALAVVAVLALLVSSDRKKIRIRYVIQLLVIEVLLA WFFLNSDVGLGFVKGFSEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFIS ALIGILQHIRVLPVVIRAIGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGK MSRNRMYTMAATAMSTVSMSIVGAYMTMLDPKYVVAALVLNMFSTFIVLSLINPYVVD ASEENIQMSNLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALIAALNALFATVTG WFGYSISFQGILGYIFYPVAWVMGVPSSEALQVGSIMATKLVSNEFVAMMDLQKIAST LSPRAEGIISVFLVSFANFSSIGIIAGAIKGLNEEQGNVVSRFGLKLVYGSTLVSVLS ASIAALVL" gene complement(2526557..2528746) /gene="yfeA" /locus_tag="STM2410" /db_xref="GeneID:1253932" CDS complement(2526557..2528746) /gene="yfeA" /locus_tag="STM2410" /note="diguanylate cyclase/phosphodiesterase domain 2; similar to E. coli orf, hypothetical protein (AAC75454.1); Blastp hit to AAC75454.1 (768 aa), 68% identity in aa 45 - 766" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461351.1" /db_xref="GI:16765736" /db_xref="GeneID:1253932" /translation="MPDKCNVLKNIKIFLLAFCLTVPAILLSRLISPRATIDSSYIFL AWLPLCVMFSVLFLFGRRGVAPMVGGMMLTNEWNFHLPLPQAMVLLFCQTFPVLLVCA IVRWQLGARWRYGIPNQGIWLRVFWLGLMTPFGIKISMHLAGHYLAFPVTISTFFGTG TAIFSIVDLLSLISAALIFTLFFYYPLRMIVSPHYMRIFWRRDVAPYLAKEKRLFTLL WFATLATLLAVLCTPFETKYIAGYLVPVLFIGFTIGVGKISYPLLNFSWALTALFLLS YNRNFLQGVGSEYSLAFILSVLISFSICLLYMARINQRSEWLNRQWHSQALTDPLTQL PNLRALEQFLLQDAGQSVCYLRMENLEFLSRHYGMQMRVHCEREVFRMLQPLLLEKEK IFHLPGSELLLVLTGPETEARLQYMLNVLNNRKIYWNNTGLDMEYGASWGTFDGRQET LQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQTTERVLRLQKIRQALERGALVLYA QPIRDAQGKGYDEILTRLRCDDGIMMPNQFIPLIAQFNLSIRFDMQVMEALLQWLSAH PSAEQGARFSVNLMPLTLLQKETASRIMQLFKRYGVPPASVIIEITEEQAFSHSEISM HNINQLRKFGLKIAIDDFGTGYANYERLKRLKADIIKIDGCFVKDILTDSLDAMIVKS ITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQGYLIGRPRPLGK" gene complement(2528938..2529010) /gene="alaX" /locus_tag="STM2411" /db_xref="GeneID:1253933" tRNA complement(2528938..2529010) /gene="alaX" /locus_tag="STM2411" /product="tRNA-Ala" /db_xref="GeneID:1253933" gene complement(2529056..2529128) /gene="alaW" /locus_tag="STM2412" /db_xref="GeneID:1253934" tRNA complement(2529056..2529128) /gene="alaW" /locus_tag="STM2412" /product="tRNA-Ala" /db_xref="GeneID:1253934" gene 2529340..2529714 /gene="yfeC" /locus_tag="STM2413" /db_xref="GeneID:1253935" regulatory 2529340..2529345 /regulatory_class="ribosome_binding_site" /gene="yfeC" /locus_tag="STM2413" /note="putative RBS for yfeC; RegulonDB:STMS1H002538" CDS 2529352..2529714 /gene="yfeC" /locus_tag="STM2413" /note="similar to E. coli orf, hypothetical protein (AAC75455.1); Blastp hit to AAC75455.1 (119 aa), 79% identity in aa 1 - 119" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461352.1" /db_xref="GI:16765737" /db_xref="GeneID:1253935" /translation="MFKERMTPEELANLTGYSRQTINKWVRKEGWATSPKPGVQGGKA RLVHVNEQVREYIRSAERSVDHHADTFTPASNASLEALLMTLAKEMTSSEQKQFTSLL VREGITGLLQRLGIRDSK" gene 2529716..2530108 /gene="yfeD" /locus_tag="STM2414" /db_xref="GeneID:1253936" CDS 2529716..2530108 /gene="yfeD" /locus_tag="STM2414" /note="similar to E. coli orf, hypothetical protein (AAC75456.1); Blastp hit to AAC75456.1 (130 aa), 70% identity in aa 1 - 129" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461353.1" /db_xref="GI:16765738" /db_xref="GeneID:1253936" /translation="MKRLRSKMTTEELAECLGVARQTVNRWIREQHWKTEKFPGVKGG RARLIHIDASVREFILNIPAFRKLPAFYQAEEAFAEYANAAHSHAYRQIIDAVENMSA QEQEKLALFLSREGIRGFLTRLGINEAD" gene complement(2530162..2531588) /gene="gltX" /locus_tag="STM2415" /db_xref="GeneID:1253937" CDS complement(2530162..2531577) /gene="gltX" /locus_tag="STM2415" /EC_number="6.1.1.17" /note="similar to E. coli glutamate tRNA synthetase, catalytic subunit (AAC75457.1); Blastp hit to AAC75457.1 (471 aa), 95% identity in aa 1 - 471" /codon_start=1 /transl_table=11 /product="glutamate--tRNA ligase" /protein_id="NP_461354.1" /db_xref="GI:16765739" /db_xref="GeneID:1253937" /translation="MKIKTRFAPSPTGYLHVGGARTALYSWLFARHHGGEFVLRIEDT DLERSTPEAIEAIMDGMNWLNLEWDEGPYFQTKRFDRYNAVIDEMLEAGTAYKCYCSK ERLEQLREDQMAKGEKPRYDGRCRHSHEHHADDEPCVVRFANPQDGSVIFDDQIRGPI EFSNQELDDLIIRRTDGSPTYNFCVVVDDWDMEITHVIRGEDHINNTPRQINILKALN APVPMYAHVSMINGDDGKKLSKRHGAVSVMQYRDDGYLPEALLNYLVRLGWSSGDQEI FTREEMIKLFSLGAVSKSASAFNTDKLLWLNHHYINTLAPEYVATHLQWHIEQENIDT RNGPQLAELVKLLGERCKTLKEMAQSCRYFYEDFSEFDADAAKKHLRPVARQPLEVVR DKLSAITDWSAENVHHAIQATADELEVGMGKVGMPLRVAVTGAGQSPALDVTVHAIGK TRSIERINKALGFIAERESQQ" regulatory complement(2531583..2531588) /regulatory_class="ribosome_binding_site" /gene="gltX" /locus_tag="STM2415" /note="putative RBS for gltX; RegulonDB:STMS1H002539" gene 2531834..2531906 /gene="valU" /locus_tag="STM2416" /db_xref="GeneID:1253938" tRNA 2531834..2531906 /gene="valU" /locus_tag="STM2416" /product="tRNA-Val" /db_xref="GeneID:1253938" gene 2531955..2532027 /gene="valX" /locus_tag="STM2417" /db_xref="GeneID:1253939" tRNA 2531955..2532027 /gene="valX" /locus_tag="STM2417" /product="tRNA-Val" /db_xref="GeneID:1253939" gene 2532072..2532144 /gene="valY" /locus_tag="STM2418" /db_xref="GeneID:1253940" tRNA 2532072..2532144 /gene="valY" /locus_tag="STM2418" /product="tRNA-Val" /db_xref="GeneID:1253940" gene 2532152..2532224 /gene="lysV" /locus_tag="STM2419" /db_xref="GeneID:1253941" tRNA 2532152..2532224 /gene="lysV" /locus_tag="STM2419" /product="tRNA-Lys" /db_xref="GeneID:1253941" gene complement(2532393..2533356) /gene="xapR" /locus_tag="STM2420" /db_xref="GeneID:1253942" CDS complement(2532393..2533277) /gene="xapR" /locus_tag="STM2420" /note="LysR family; similar to E. coli regulator for xapA (AAC75458.1); Blastp hit to AAC75458.1 (294 aa), 80% identity in aa 1 - 293" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="NP_461355.1" /db_xref="GI:16765740" /db_xref="GeneID:1253942" /translation="MERAHRIDLKLLRYFLAVAEELHFGRAAARLNMSQPPLSIHIKE LEQQLGTLLFIRHSRSVALTHAGKVLMEESRRLLASANQALARVEQIGRGEAGRIELG VVGTALWGRMRPAMRHFLKANPNVEVLFREKSPGMQMALLERRELDAGIWRMAIEPAV GFTSIRLHESAFMVAVPEDHDLASRDSVPLAALRNEYFVTLPSVHSDWGFLQRVCQQA GFSPMIIREVVEPQTVLAMISMGIGITLMADGYAQMSWPGVVFRPLEERIPADLYIVY DQQQATPALEKLVAALTV" regulatory complement(2533288..2533293) /regulatory_class="ribosome_binding_site" /gene="xapR" /locus_tag="STM2420" /note="putative RBS for xapR; RegulonDB:STMS1H002542" regulatory complement(2533329..2533337) /regulatory_class="minus_10_signal" /gene="xapR" /locus_tag="STM2420" /note="putative -10_signal for xapR; RegulonDB:STMLTH004543" regulatory complement(2533348..2533356) /regulatory_class="minus_35_signal" /gene="xapR" /locus_tag="STM2420" /note="putative -35_signal for xapR; RegulonDB:STMLTH004543" gene complement(2533546..2534814) /gene="xapB" /locus_tag="STM2421" /db_xref="GeneID:1253943" CDS complement(2533546..2534802) /gene="xapB" /locus_tag="STM2421" /note="similar to E. coli xanthosine permease (AAC75459.1); Blastp hit to AAC75459.1 (418 aa), 88% identity in aa 1 - 418" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_461356.1" /db_xref="GI:16765741" /db_xref="GeneID:1253943" /translation="MGITSRLKVMSFLQYFIWGSWLVTLGSYMINTLDFTGANVGMVY SSKGLAAIIMPGIMGIIADKWLRAERAYMLCHLVCAGALLYATTVTDPQTMFWVMLVN AMAYMPTIALSNSVSYSCLAKAGQDPVTSFPPVRVFGTIGFIVAMWTVSLMGLELSSA QLYIASGASLLLALYALTLPKIPVAEKKANTTLASKLGLDAFVLFKNPRMAIFFLFAM MLGAVLQITNVFGNPFLHDFARNPEFADSFVVKYPSILLSVSQMAEVGFILTIPFFLK RFGIKTVMLMSMLAWTLRFGFFAFGDPSPFGFVLLLLSMIVYGCAFDFFNISGSVFVE QEVDSSIRASAQGLFMTMVNGVGAWIGSLLSGMAVDYFSIDGVKDWQTIWLVFAAYAL ALAVIFALFFKYQHHPEKLSTKSLAH" regulatory complement(2534809..2534814) /regulatory_class="ribosome_binding_site" /gene="xapB" /locus_tag="STM2421" /note="putative RBS for xapB; RegulonDB:STMS1H002543" gene complement(2534857..2535746) /gene="xapA" /locus_tag="STM2422" /db_xref="GeneID:13865713" CDS complement(2534857..2535690) /gene="xapA" /locus_tag="STM2422" /EC_number="2.4.2.-" /note="similar to E. coli xanthosine phosphorylase (AAC75460.1); Blastp hit to AAC75460.1 (277 aa), 87% identity in aa 1 - 277" /codon_start=1 /transl_table=11 /product="purine-nucleoside phosphorylase" /protein_id="NP_448816.1" /db_xref="GI:1109557692" /db_xref="GeneID:13865713" /translation="MPHALFSHNPEYCVDIVHAHKPAFTPRVAFILGSGLGALADQIE DAVAISYEKLPGFPVSTVHGHAGELVLDHLAGVPVACMKGRGHFYEGRGMAVMTDAIR TLKLLGCEVLFCTNAAGSLRPEVGPGSLVALSDHINTMPGTPMVGPNDDRYGDRFFSL ANAYDADYRAMLQSVAAEEGFTLTEGVFVSYPGPNFETAAEIRMMQIIGGDVVGMSVV PEVISARHCGLKVVAVSAITNLAEGLGDVKLSHAQTLAAAELSRQNFINLICGFLRKL A" regulatory complement(2535695..2535700) /regulatory_class="ribosome_binding_site" /gene="xapA" /locus_tag="STM2422" /note="putative RBS for xapA; RegulonDB:STMS1H002544" regulatory complement(2535722..2535730) /regulatory_class="minus_10_signal" /gene="xapA" /locus_tag="STM2422" /note="putative -10_signal for xapA; RegulonDB:STMLTH004544" regulatory complement(2535738..2535746) /regulatory_class="minus_35_signal" /gene="xapA" /locus_tag="STM2422" /note="putative -35_signal for xapA; RegulonDB:STMLTH004544" gene 2535932..2536707 /gene="yfeN" /locus_tag="STM2423" /db_xref="GeneID:1253945" regulatory 2535932..2535937 /regulatory_class="ribosome_binding_site" /gene="yfeN" /locus_tag="STM2423" /note="putative RBS for yfeN; RegulonDB:STMS1H002545" CDS 2535946..2536707 /gene="yfeN" /locus_tag="STM2423" /note="similar to E. coli putative sugar hydrolase (AAC75461.1); Blastp hit to AAC75461.1 (254 aa), 85% identity in aa 1 - 254" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461358.1" /db_xref="GI:16765743" /db_xref="GeneID:1253945" /translation="MKKILTLTLSSLLIIPALTHAEFKGGFADIGLHYLDWTSDTTEK TSKKSHKDDFGYLELEGGANFSWGEMYGFFDWENFYNGRHAKPGSEQRYTFKNTNRIY LGDTGLNLYLHAYGTYGSPHRANFHDDMFLYGLGYNFTGNGYWFKPFFAKRYTDQTYY TGDNGYVLGWVAGYSFSLGSEKFSVTNWNEYEFDRDASYAAGNGGKDGINGAVALWWN ATPHLTAGVQYRYADNKLGESFLQDGIIYSIKYLF" gene complement(2536769..2537695) /gene="yfeR" /locus_tag="STM2424" /db_xref="GeneID:1253946" CDS complement(2536769..2537695) /gene="yfeR" /locus_tag="STM2424" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC75462.1); Blastp hit to AAC75462.1 (308 aa), 79% identity in aa 1 - 308" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_461359.1" /db_xref="GI:16765744" /db_xref="GeneID:1253946" /translation="MNYSLRQLRIFITVAQAKSFSRAGDRIGLSQSAVSHSVKELERQ TGVRLLDRTTREVVLTEAGQQLATRLERVLDELNSILRDAGRVGTQLTGTVRVAASQT ISAHLIPQCIAQSNSLYPAIDFVLHDRPQQWVLESIRQGEVDFGIVIDPGAAVDLQCE AILSEPFLLLCRQDHPLAHQEWVSWQDLKQASLVLQDYASGSRPLIDAALAHFAIEAD IVQEIGHPATLFPMVEAGIGISVLPALALPLPQGSHLQVKRLTPVVERQLMLARRKNR SLSTAAQALWDVVRTQASELTAARAKDPLYQL" gene 2537774..2538783 /gene="yfeH" /locus_tag="STM2425" /db_xref="GeneID:1253947" regulatory 2537774..2537779 /regulatory_class="ribosome_binding_site" /gene="yfeH" /locus_tag="STM2425" /note="putative RBS for yfeH; RegulonDB:STMS1H002546" CDS 2537785..2538783 /gene="yfeH" /locus_tag="STM2425" /note="similar to E. coli putative cytochrome oxidase (AAC75463.1); Blastp hit to AAC75463.1 (332 aa), 90% identity in aa 1 - 332" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461360.2" /db_xref="GI:1109557693" /db_xref="GeneID:1253947" /translation="MKLFRILDPFTLTLITVVLLASFFPAEGGFVPVVEGITTAAIAL LFFMHGAKLSREAIIAGGSHWRLHLWVMCSTFVLFPVLGVLFAWWAPVNVDPMLYSGF LYLCILPATVQSAIAFTSLAGGNVAAAVCSASASSLLGIFLSPLLVGLVMNIHGAQGS LEEVGKIMLQLLLPFVLGHLSRPWIGNWVARNKKWIAKTDQTSILLVVYSAFSEAVVN GIWHKVGWGSLLFIVVVSLILLAIVIAINVFVARKCGFNKADEITIVFCGSKKSLANG IPMANILFPTSVLGMMVLPLMIFHQIQLMVCAGLARRYKRQTEKLQAQQESRAAKA" gene complement(2538780..2539007) /locus_tag="STM2426" /db_xref="GeneID:1253948" CDS complement(2538780..2539007) /locus_tag="STM2426" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461361.3" /db_xref="GI:1109557694" /db_xref="GeneID:1253948" /translation="MPEMEKEQLVEIANTVMPFGKYQGRRLIDLPEEYLLWFARKDQF PAGKLGELMQITLLIKTEGLTQLVQPLKRPL" gene complement(2539000..2541025) /gene="lig" /locus_tag="STM2427" /db_xref="GeneID:1253949" CDS complement(2539000..2541015) /gene="lig" /locus_tag="STM2427" /EC_number="6.5.1.2" /note="similar to E. coli DNA ligase (AAC75464.1); Blastp hit to AAC75464.1 (671 aa), 92% identity in aa 1 - 671" /codon_start=1 /transl_table=11 /product="DNA ligase (NAD(+)) LigA" /protein_id="NP_461362.1" /db_xref="GI:16765747" /db_xref="GeneID:1253949" /translation="MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRE LEAQRPDLITPDSPTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL KSTENVIWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLH GDNIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKR PLTFFCYGVGILEGGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKD RPTLGFDIDGVVIKVNSLALQELLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRT GAITPVARLEPVQVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVL SERPEETRPIVFPTHCPVCGSDVERVEGEAVTRCTGGLICGAQRKESLKHFVSRRAMD VDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGLDRMGPKSAQNVVNALEKSKTTTF ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAE ESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAKARLVAL GAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLLGA" regulatory complement(2541020..2541025) /regulatory_class="ribosome_binding_site" /gene="lig" /locus_tag="STM2427" /note="putative RBS for lig; RegulonDB:STMS1H002547" gene complement(2541087..2542082) /gene="zipA" /locus_tag="STM2428" /db_xref="GeneID:1253950" CDS complement(2541087..2542073) /gene="zipA" /locus_tag="STM2428" /note="cell division protein ZIPA. (SW:ZIPA_SALTY)" /codon_start=1 /transl_table=11 /product="cell division protein ZipA" /protein_id="NP_461363.1" /db_xref="GI:16765748" /db_xref="GeneID:1253950" /translation="MMQDLRLILIIVGAIAIIALLVHGFWTSRKERSSMFRDRPLKRM KSKRDDDSYDDDVEEDEGVGEVRVHRVNHAPGQSQEHDAPRQSPQHQYQPPYASAQPR PAAPPQPQAPMQQPVQQPVQPAPQPQQVQPSAPPVQPPQQQPAPPSQAPQPVAQPAPP PSAQTFQPAEPVVEAEPVVEEAPVVEKPQRKEAVIIMNVAAHHGSELNGEVLLNSIQQ SGFKFGDMNIFHRHLSPDGSGPALFSLANMVNPGTFDPEMTDFTTPGVTIFMQVPSYG DALQNFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDRIREVMDANA" regulatory complement(2542077..2542082) /regulatory_class="ribosome_binding_site" /gene="zipA" /locus_tag="STM2428" /note="putative RBS for zipA; RegulonDB:STMS1H002548" gene 2542287..2543066 /gene="cysZ" /locus_tag="STM2429" /db_xref="GeneID:1253951" regulatory 2542287..2542292 /regulatory_class="ribosome_binding_site" /gene="cysZ" /locus_tag="STM2429" /note="putative RBS for cysZ; RegulonDB:STMS1H002549" CDS 2542305..2543066 /gene="cysZ" /locus_tag="STM2429" /note="CYSZ protein. (SW:CYSZ_SALTY)" /codon_start=1 /transl_table=11 /product="sulfate transporter CysZ" /protein_id="NP_461364.1" /db_xref="GI:16765749" /db_xref="GeneID:1253951" /translation="MVSSSTTVPRSGVYYFSQGWKLVTLPGIRRFVILPLLVNIVLMG GAFWWLFTQLDAWIPSLMSHVPDWLQWLSYLLWPIAVISVLLVFGYFFSTLANWIAAP FNGLLAEQLEARLTGATPPDTGILGIMKDVPRIMKREWQKLAWYLPRAIVLLILYFIP GIGQTIAPVLWFLFSAWMLAIQYCDYPFDNHKVPFKTMRAALRTQKVANMQFGALTSL FTMIPVLNLFIMPVAVCGATAMWVDCWRAKHALWK" gene 2543157..2544201 /gene="cysK" /locus_tag="STM2430" /db_xref="GeneID:1253952" regulatory 2543157..2543165 /regulatory_class="minus_35_signal" /gene="cysK" /locus_tag="STM2430" /note="putative -35_signal for cysK; RegulonDB:STMLTH004545" regulatory 2543184..2543192 /regulatory_class="minus_10_signal" /gene="cysK" /locus_tag="STM2430" /note="putative -10_signal for cysK; RegulonDB:STMLTH004545" regulatory 2543219..2543224 /regulatory_class="ribosome_binding_site" /gene="cysK" /locus_tag="STM2430" /note="putative RBS for cysK; RegulonDB:STMS1H002550" CDS 2543230..2544201 /gene="cysK" /locus_tag="STM2430" /EC_number="2.5.1.47" /note="cysteine synthase A. (SW:CYSK_SALTY)" /codon_start=1 /transl_table=11 /product="cysteine synthase A" /protein_id="NP_461365.1" /db_xref="GI:16765750" /db_xref="GeneID:1253952" /translation="MSKIYEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCR IGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRK LLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPE IWEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGE EIKPGPHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGA AVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKELQQ" protein_bind 2544251..2544271 /note="putative binding site for CRP, RegulonDB: STMS1H000070" /bound_moiety="CRP" protein_bind 2544367..2544381 /note="putative binding site for FruR, RegulonDB: STMS1H000183" /bound_moiety="FruR" protein_bind 2544381..2544393 /note="putative binding site for CRP, RegulonDB: STMS1H000089" /bound_moiety="CRP" gene 2544492..2544842 /gene="ptsH" /locus_tag="STM2431" /db_xref="GeneID:1253953" regulatory 2544492..2544500 /regulatory_class="minus_35_signal" /gene="ptsH" /locus_tag="STM2431" /note="putative -35_signal for ptsH; RegulonDB:STMLTH004546" regulatory 2544518..2544526 /regulatory_class="minus_10_signal" /gene="ptsH" /locus_tag="STM2431" /note="putative -10_signal for ptsH; RegulonDB:STMLTH004546" regulatory 2544572..2544577 /regulatory_class="ribosome_binding_site" /gene="ptsH" /locus_tag="STM2431" /note="putative RBS for ptsH; RegulonDB:STMS1H002551" CDS 2544585..2544842 /gene="ptsH" /locus_tag="STM2431" /note="Hpr protein; PTS family; phosphocarrier protein HPR (histidine-containing protein). (SW:PTHP_ECOLI)" /codon_start=1 /transl_table=11 /product="HPr family phosphocarrier" /protein_id="NP_461366.1" /db_xref="GI:16765751" /db_xref="GeneID:1253953" /translation="MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASA KSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE" gene 2544880..2546618 /gene="ptsI" /locus_tag="STM2432" /db_xref="GeneID:1253954" regulatory 2544880..2544885 /regulatory_class="ribosome_binding_site" /gene="ptsI" /locus_tag="STM2432" /note="putative RBS for ptsI; RegulonDB:STMS1H002552" CDS 2544891..2546618 /gene="ptsI" /locus_tag="STM2432" /EC_number="2.7.3.9" /note="Enzyme I; General PTS family; phosphoenolpyruvate-protein phosphotransferase. (SW:PT1_SALTY)" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate--protein phosphotransferase" /protein_id="NP_461367.1" /db_xref="GI:16765752" /db_xref="GeneID:1253954" /translation="MISGILASPGIAFGKALLLKEDEIVIDRKKISADKVDQEVERFL SGRAKASAQLEAIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADA AAHEVIEGQATALEELDDEYLKERAADVRDIGKRLLRNILGLAIIDLSAIQEEVILVA ADLTPSETAQLNLQKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTAQVKNGDYL ILDAVNNQVYVNPTNDVIEQLRAVQEQVATEKAELAKLKDLPAITLDGHQVEVCANIG TVRDVEGAERNGAEGVGLYRTEFLFMDRDALPTEEEQFAAYKAVAEACGSQAVIVRTM DIGGDKELPYMNFPKEENPFLGWRAVRIAMDRKEILRDQVRAILRASAFGKLRIMFPM IISVEEVRALRKEIEIYKQELRDEGKAFDESIEIGVMVETPAAATIARHLAKEVDFFS IGTNDLTQYTLAVDRGNDMISHLYQPMSPSVLNLIKQVIDASHAEGKWTGMCGELAGD ERATLLLLGMGLDEFSMSAISIPRIKKIIRNTNFEDAKVLAEQALAQPTTDELMTLVN KFIEEKTIC" gene 2546647..2547168 /gene="crr" /locus_tag="STM2433" /db_xref="GeneID:1253955" regulatory 2546647..2546652 /regulatory_class="ribosome_binding_site" /gene="crr" /locus_tag="STM2433" /note="putative RBS for crr; RegulonDB:STMS1H002553" CDS 2546659..2547168 /gene="crr" /locus_tag="STM2433" /EC_number="2.7.1.191" /note="PTS family; PTS system; glucose-specific IIA component (EIIA-GLC) (glucose-permease IIA component) (phosphotransferase enzyme II, A component). (SW:PTGA_SALTY)" /codon_start=1 /transl_table=11 /product="PTS glucose transporter subunit IIA" /protein_id="NP_461368.1" /db_xref="GI:16765753" /db_xref="GeneID:1253955" /translation="MGLFDKLKSLVSDDKKDTGTIEIVAPLSGEIVNIEDVPDVVFAE KIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGIELFVHFGIDTVELKGE GFKRIAEEGQRVKVGDPVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVG ETPVIRIKK" gene complement(2547317..2547563) /locus_tag="STM2434" /db_xref="GeneID:1253956" CDS complement(2547317..2547556) /locus_tag="STM2434" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461369.1" /db_xref="GI:16765754" /db_xref="GeneID:1253956" /translation="MKSYRLVVRQQGRIVGHFETSGLDALEDICVARAMFGITGGYQC ELQVSDSERRMLESGPDGMKILMREKCFRPVTSQL" gene complement(2547553..2548431) /gene="pdxK" /locus_tag="STM2435" /db_xref="GeneID:1253957" CDS complement(2547553..2548419) /gene="pdxK" /locus_tag="STM2435" /EC_number="2.7.1.35" /note="hydroxymethylpyrimidine kinase; pyridoxine kinase. (SW:PDXK_SALTY)" /codon_start=1 /transl_table=11 /product="bifunctional pyridoxal kinase/hydroxymethylpyrimidine kinase" /protein_id="NP_461370.1" /db_xref="GI:16765755" /db_xref="GeneID:1253957" /translation="MGQESDIQSVLFDDNHRALQTDIVAVQSQVVYGSVGNSIAVPAI KAQGLRVTAVPTVLFSNTPHYKTFYGGIIPAEWFAGYLTALNERDALRELKAITTGYM GSADQIVLLSKWLMAIRASHPEVCILVDPVIGDTDSGMYVQAEIPQAYRTHLLPQAQG LTPNVFELEMLSGKPCRTLEEAVAAAQSLLSDTLKWVVITSAPGESLETITVAVVTAQ VVEVFAHPRVATELKGTGDLFCAELVSGIVQGKKLTTAAKDAAQRVLEVMTWTQQCGC DELILPPAGEAR" regulatory complement(2547558..2547563) /regulatory_class="ribosome_binding_site" /locus_tag="STM2434" /note="putative RBS for STM2434; RegulonDB:STMS1H002554" regulatory complement(2548426..2548431) /regulatory_class="ribosome_binding_site" /gene="pdxK" /locus_tag="STM2435" /note="putative RBS for pdxK; RegulonDB:STMS1H002555" gene 2548498..2549794 /gene="ptsJ" /locus_tag="STM2436" /db_xref="GeneID:1253958" regulatory 2548498..2548503 /regulatory_class="ribosome_binding_site" /gene="ptsJ" /locus_tag="STM2436" /note="putative RBS for ptsJ; RegulonDB:STMS1H002556" CDS 2548502..2549794 /gene="ptsJ" /locus_tag="STM2436" /note="putative transcriptional regulatory protein PTSJ. (SW:PTSJ_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional regulator PtsJ" /protein_id="NP_461371.1" /db_xref="GI:16765756" /db_xref="GeneID:1253958" /translation="MIDGKTANEIFDSIRQHIIAGTLRAEDSLPPVRELASELKVNRN TVAAAYKRLITAGLAQSLGRNGTVIKGSPSPVALEGGDPHTPLHDLSGGNPDPQRLPD LSRYFARLSRTPHLYGDAPVSPELHAWAARWLRDATPVAGEIDITSGAIDAIERLLCA HLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDSEGMQPEKLERALNQGARAVILT PRAHNPTGCSLSARRAAALQNMLARYPQVVVIIDDHFALLSSSPWQPVIAQTTQHWAV IRSVSKTLGPDLRLAIVASDSATSAKLRLRLNAGSQWVSHLLQDLVYACLTDPEYQHR LTQTRLFYAARQQKLARALQQYGIAISPGDGVNAWLPLDTHSQATAFTLAKSGWLVRE GEAFGVSAPSHGLRITLSTLNDSEINTLAADIHQALNR" gene 2549801..2550528 /gene="yfeJ" /locus_tag="STM2437" /db_xref="GeneID:1253959" regulatory 2549801..2549806 /regulatory_class="ribosome_binding_site" /gene="yfeJ" /locus_tag="STM2437" /note="putative RBS for yfeJ; RegulonDB:STMS1H002557" CDS 2549809..2550528 /gene="yfeJ" /locus_tag="STM2437" /note="contains glutamine amidotransferase domain; hypothetical 18.7 Kda protein in pdxK-cysM intergenic region. (SW:YFEJ_SALTY)" /codon_start=1 /transl_table=11 /product="putative GMP synthase" /protein_id="NP_461372.1" /db_xref="GI:16765757" /db_xref="GeneID:1253959" /translation="MRVHFVVHESFESAGAYLKWAEDRGYTISWSRVYAGEALPPNAD EFDMLVVFGGPQSPRTTREECPYFDSRAEQHLINQAVTARRMVIGICLGSQLIGEALG AAVCQSPEKEIGHYPITLTEAGLRHPLIAHFGSPLTVGHWHNDMPGLTDQATVLAESE GCPRQIVQYGNFVYGFQCHMEFTVEAVEGLIQHSQQELADAQGKRFIRSVAEMRAWNY QQMNEKLWRFLDELTLAHSQK" gene 2550568..2550967 /gene="yfeK" /locus_tag="STM2438" /db_xref="GeneID:1253960" regulatory 2550568..2550573 /regulatory_class="ribosome_binding_site" /gene="yfeK" /locus_tag="STM2438" /note="putative RBS for yfeK; RegulonDB:STMS1H002558" CDS 2550587..2550967 /gene="yfeK" /locus_tag="STM2438" /note="hypothetical 13.3 Kda protein in pdxK-cysM intergenic region. (SW:YFEK_SALTY)" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_461373.2" /db_xref="GI:1109557695" /db_xref="GeneID:1253960" /translation="MKKDFTMKKIVCAVVALLLTLPAWAKLNAHEEARINAMLNALAQ KKDLTFVRNGDAHNCEEAVSHLRLKLGNTRNRIDTAEQFIDKVASSSSITGKPYIVKI PGKSDENAQPYLHALIAETDKNVE" gene 2550976..2551519 /gene="yfeL" /locus_tag="STM2439" /db_xref="GeneID:1253961" regulatory 2550976..2550981 /regulatory_class="ribosome_binding_site" /gene="yfeL" /locus_tag="STM2439" /note="putative RBS for yfeL; RegulonDB:STMS1H002559" CDS 2550980..2551519 /gene="yfeL" /locus_tag="STM2439" /note="penicillin-binding protein; hypothetical 20.5 Kda protein in pdxK-cysM intergenic region. (SW:YFEL_SALTY)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461374.1" /db_xref="GI:16765759" /db_xref="GeneID:1253961" /translation="MPGVLLWFFKGVIALLLAFAVGLIVYYYLEIRPIAQTALQSASF WLSESPQTRFLRRAAAKIHPKSYTARLLYTQAGVDGHFRIAIWVFWLDSLYRDDELYA MMLAQAYYGRDSQGNAVYGTKNAALTLFHVPVTEMACQQQVQLIYMFKAPSLYRPGSA RLVESSKHYMTLCQEQIQQ" gene complement(2551650..2552569) /gene="cysM" /locus_tag="STM2440" /db_xref="GeneID:1253962" CDS complement(2551650..2552561) /gene="cysM" /locus_tag="STM2440" /EC_number="2.5.1.47" /note="O-acetylserine sulfhydrolase B; cysteine synthase B. (SW:CYSM_SALTY)" /codon_start=1 /transl_table=11 /product="cysteine synthase B" /protein_id="NP_461375.1" /db_xref="GI:16765760" /db_xref="GeneID:1253962" /translation="MNTLEQTIGNTPLVKLQRLGPDNGSEIWVKLEGNNPAGSVKDRA ALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA MRAYGAELILVTKEQGMEGARDLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWR QTSGRITHFVSSMGTTGTITGVSRFLREQEKPVTIVGLQPEEGSSIPGIRRWPAEYMP GIFNASLVDEVLDIHQNDAENTMRELAVREGIFCGVSSGGAVAGALRVARATPGAIVV AIICDRGDRYLSTGVFGEEHFSQGAGI" regulatory complement(2552564..2552569) /regulatory_class="ribosome_binding_site" /gene="cysM" /locus_tag="STM2440" /note="putative RBS for cysM; RegulonDB:STMS1H002560" gene complement(2552629..2553739) /gene="cysA" /locus_tag="STM2441" /db_xref="GeneID:1253963" CDS complement(2552629..2553726) /gene="cysA" /locus_tag="STM2441" /note="chromate resistance; ABC superfamily (atp_bind); sulfate transport atp-binding protein CYSA. (SW:CYSA_SALTY)" /codon_start=1 /transl_table=11 /product="sulfate ABC transporter ATP-binding protein" /protein_id="NP_461376.1" /db_xref="GI:16765761" /db_xref="GeneID:1253963" /translation="MSIEIARIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTL LRIIAGLEHQSSGHIRFHGTDVSRLHARERKVGFVFQHYALFRHMTVFDNIAFGLTVL PRRDRPTAAAIKTKVTQLLEMVQLAHLADRFPAQLSGGQKQRVALARALAVEPQILLL DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEATEVADRVVVMSQGNIEQA DAPDRVWREPATRFVLEFMGEVNRLTGTVRGGQFHVGAHRWPLGYTPAYQGPVDLFLR PWEVDISRRTSLDSPLPVQVIEASPKGHYTQLVVQPLGWYHDPLTVVMAGEDVPVRGE RLFVGLQKARLYNGDQRIETREEELALAQSA" gene complement(2553716..2554596) /gene="cysW" /locus_tag="STM2442" /db_xref="GeneID:1253964" CDS complement(2553716..2554591) /gene="cysW" /locus_tag="STM2442" /note="ABC superfamily (membrane); similar to E. coli sulfate transport system permease W protein (AAC75476.1); Blastp hit to AAC75476.1 (149 aa), 99% identity in aa 1 - 149" /codon_start=1 /transl_table=11 /product="sulfate ABC transporter permease subunit CysW" /protein_id="NP_461377.1" /db_xref="GI:16765762" /db_xref="GeneID:1253964" /translation="MAEVTQLKRYDVPRINWGKWFLIGVGMLVSAFILLVPMIYIFVQ AFSKGLMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLL LTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQMMFSWPGMVLVTIFVTCPF VVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEF GAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRL ENQEKRAQQEENHEH" regulatory complement(2553734..2553739) /regulatory_class="ribosome_binding_site" /gene="cysW" /locus_tag="STM2442" /note="putative RBS for cysA; RegulonDB:STMS1H002561" gene complement(2554591..2555438) /gene="cysU" /locus_tag="STM2443" /db_xref="GeneID:1253965" CDS complement(2554591..2555424) /gene="cysU" /locus_tag="STM2443" /note="ABC superfamily (membrane); similar to E. coli sulfate, thiosulfate transport system permease T protein (AAC75477.1); Blastp hit to AAC75477.1 (277 aa), 95% identity in aa 1 - 277" /codon_start=1 /transl_table=11 /product="sulfate ABC transporter permease subunit CysT" /protein_id="NP_461378.1" /db_xref="GI:16765763" /db_xref="GeneID:1253965" /translation="MLAVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLSQMSW AQYWDVVTNPQVVAAYKVTLLAAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDL PFALPTAVAGLTLASLFSVNGFYGQFLAQFDIKVTYTWLGIAVAMAFTSIPFVVRTVQ PVLEELGPEYEEAAQTLGATRLQSFRKVVLPELSPALIAGVALSFTRSLGEFGAVIFI AGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRRVVG H" regulatory complement(2554591..2554596) /regulatory_class="ribosome_binding_site" /gene="cysU" /locus_tag="STM2443" /note="putative RBS for cysW; RegulonDB:STMS1H002562" gene complement(2555424..2556546) /gene="cysP" /locus_tag="STM2444" /db_xref="GeneID:1253966" CDS complement(2555424..2556440) /gene="cysP" /locus_tag="STM2444" /note="ABC superfamily (bind_prot); thiosulfate-binding protein precursor. (SW:CYSP_SALTY)" /codon_start=1 /transl_table=11 /product="thiosulfate transporter subunit" /protein_id="NP_461379.1" /db_xref="GI:16765764" /db_xref="GeneID:1253966" /translation="MAVNLLKKRPLTLAAMLLLAGQAQATELLNSSYDVSRELFAALN PPFEQQWAKDNGGDKLTIKQSHAGSSKQALAILQGLKADVVTYNQVTDVQILHDKGKL IPADWQSRLPNNSSPFYSTMGFLVRKGNPKNIHDWSDLVRSDVKLIFPNPKTSGNARY TYLAAWGAADNADGGDKAKTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFE SEVNNIRKQYEAQGFEVVIPKTNILAEFPVAWVDKNVQANGTEKAAKAYLNWLYSPQA QTIITHYYYRVNNPEIMGKQADKFPQTELFRVEEKFGSWPEVMKTHFASGGELDKLLA AGRK" regulatory complement(2555433..2555438) /regulatory_class="ribosome_binding_site" /gene="cysU" /locus_tag="STM2443" /note="putative RBS for cysU; RegulonDB:STMS1H002563" regulatory complement(2556446..2556451) /regulatory_class="ribosome_binding_site" /gene="cysP" /locus_tag="STM2444" /note="putative RBS for cysP; RegulonDB:STMS1H002564" regulatory complement(2556522..2556530) /regulatory_class="minus_10_signal" /gene="cysP" /locus_tag="STM2444" /note="putative -10_signal for cysP; RegulonDB:STMLTH004547" regulatory complement(2556538..2556546) /regulatory_class="minus_35_signal" /gene="cysP" /locus_tag="STM2444" /note="putative -35_signal for cysP; RegulonDB:STMLTH004547" gene complement(2556598..2557404) /gene="ucpA" /locus_tag="STM2445" /db_xref="GeneID:1253967" CDS complement(2556598..2557389) /gene="ucpA" /locus_tag="STM2445" /EC_number="1.-.-.-" /note="similar to E. coli putative oxidoreductase (AAC75479.1); Blastp hit to AAC75479.1 (285 aa), 92% identity in aa 23 - 285" /codon_start=1 /transl_table=11 /product="NAD(P)-dependent oxidoreductase" /protein_id="NP_461380.1" /db_xref="GI:16765765" /db_xref="GeneID:1253967" /translation="MGKLTGKTALITGASQGIGEGIARVFARHGANLILLDISDEIEK LADELGGRGHRCTAVKADVRDFASVQAAVARAKETEGRIDILVNNAGVCRLGNFLDMS EEDRDFHIDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVADPGETAYALSKA AIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPDDPESVLTEMAKAIPL RRLADPLEVGELAAFLASDESSYLTGTQNVIDGGSTLPESVSVGV" regulatory complement(2557399..2557404) /regulatory_class="ribosome_binding_site" /gene="ucpA" /locus_tag="STM2445" /note="putative RBS for ucpA; RegulonDB:STMS1H002565" gene complement(2557627..2558537) /locus_tag="STM2446" /db_xref="GeneID:1253968" CDS complement(2557627..2558526) /locus_tag="STM2446" /note="similar to E. coli orf, hypothetical protein (AAC75484.1); Blastp hit to AAC75484.1 (308 aa), 94% identity in aa 10 - 308" /codon_start=1 /transl_table=11 /product="peroxidase" /protein_id="NP_461381.1" /db_xref="GI:16765766" /db_xref="GeneID:1253968" /translation="MSQVQSGILPEHCRAAIWIEANVKGDLDALRAASRTFADKLATF EVKFPDAHLGAVVAFGNNTWRALSGGVGAEELKDFIPYGKGLAPATQYDVLIHILSLR HDVNFSVAQAAMEAFGDCIDVKEEVHGFRWVEERDLSGFVDGTENPAGEETRREVAVI KDGVDAGGSYVFVQRWEHNLKQLNRMSIHDQEMMIGRTKEANEEIDGDARPATSHLSR VDLKEDGKGLKIVRQSLPYGTASGTHGLYFCAYCARLHNIEQQLLSMFGDTDGKRDAM LRFTKPVTGGYYFAPSLDRLLAL" regulatory complement(2558532..2558537) /regulatory_class="ribosome_binding_site" /locus_tag="STM2446" /note="putative RBS for STM2446; RegulonDB:STMS1H002566" gene complement(2558621..2559207) /locus_tag="STM2447" /db_xref="GeneID:1253969" CDS complement(2558621..2559196) /locus_tag="STM2447" /note="similar to E. coli orf, hypothetical protein (AAC75485.1); Blastp hit to AAC75485.1 (191 aa), 80% identity in aa 1 - 191" /codon_start=1 /transl_table=11 /product="RpoE-regulated lipoprotein" /protein_id="NP_461382.1" /db_xref="GI:16765767" /db_xref="GeneID:1253969" /translation="MKSLRLTLLALPLAVTGCSTLSSVNWSAANPWNWFGSSTEVTEQ GVGALTAATPLEEPAIAEALDGDYRLRSGMKTDNGNVVRFFEAMKGDSVAMVINGEQG TVSRIDVLDSDIPTAAGGKIGTPFSDLYSKAFGHCEPVSSDSHTSVECKAEGSQHISY VFSGEWSGPEGLMPPDDVLKNWDVRKIIWRR" regulatory complement(2559202..2559207) /regulatory_class="ribosome_binding_site" /locus_tag="STM2447" /note="putative RBS for STM2447; RegulonDB:STMS1H002567" gene complement(2559258..2559707) /gene="yfeZ" /locus_tag="STM2448" /db_xref="GeneID:1253970" CDS complement(2559258..2559707) /gene="yfeZ" /locus_tag="STM2448" /note="similar to E. coli orf, hypothetical protein (AAC75486.1); Blastp hit to AAC75486.1 (151 aa), 73% identity in aa 3 - 151" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461383.1" /db_xref="GI:16765768" /db_xref="GeneID:1253970" /translation="MKSTEFHPADYDVHGRLRLPFLFWCVLLLQARAWVLFVIAGSSR GQGNTLLNFFYPDHDNFWLGLLPGVPAVVAFLLSGRRDAVPGVWRWLRGLLILAQLVS LCWLPVMWLGGDPVNGVGLALLLADIVALIWLLTNQRLRACFSLEKE" gene complement(2559694..2560230) /locus_tag="STM2449" /db_xref="GeneID:1253971" CDS complement(2559694..2560230) /locus_tag="STM2449" /note="similar to E. coli orf, hypothetical protein (AAC75487.1); Blastp hit to AAC75487.1 (178 aa), 85% identity in aa 1 - 178" /codon_start=1 /transl_table=11 /product="putative acetyltransferase" /protein_id="NP_461384.3" /db_xref="GI:1109557696" /db_xref="GeneID:1253971" /translation="MTHRHYAIFSATSRQILAESDVCAIILVFPPEKATNTMEIRVFR QEDFEEVITLWERCDLLRPWNDPEMDIERKVNHDVSLFLVAEVSGEVVGTVMGGYDGH RGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQIMVRDDNDVVLGMYERLGY EHSDALSLGKRLIEDEEY" gene 2560324..2561201 /gene="amiA" /locus_tag="STM2450" /db_xref="GeneID:1253972" regulatory 2560324..2560329 /regulatory_class="ribosome_binding_site" /gene="amiA" /locus_tag="STM2450" /note="putative RBS for amiA; RegulonDB:STMS1H002568" CDS 2560332..2561201 /gene="amiA" /locus_tag="STM2450" /EC_number="3.5.1.28" /note="probable N-acetylmuramoyl-L-alanine amidase AMIA precursor. (SW:AMIA_SALTY)" /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-l-alanine amidase I" /protein_id="NP_461385.1" /db_xref="GI:16765770" /db_xref="GeneID:1253972" /translation="MSTFKLLKTLTSRRQVLKTGLAALTLSGMSHAVAKEETLKTSNG HSKPKTKKTGSKRLVMLDPGHGGIDTGAIGRNGSQEKHVVLAIAKNVRAILRNHGIDA RLTRTGDTFIPLYDRVEIAHKHGADLFMSIHADGFTNPKAAGASVFALSNRGASSAMA KYLSERENRADEVAGKKATDRDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPIHKL HSRTTEQAAFVVLKSPSIPSVLVETSFITNPEEERLLGTTAFRQKIATAIANGIISYF HWFDNQKAHTKKR" gene 2561195..2562103 /gene="hemF" /locus_tag="STM2451" /db_xref="GeneID:1253973" regulatory 2561195..2561200 /regulatory_class="ribosome_binding_site" /gene="amiA" /locus_tag="STM2450" /note="putative RBS for hemF; RegulonDB:STMS1H002569" CDS 2561204..2562103 /gene="hemF" /locus_tag="STM2451" /EC_number="1.3.3.3" /note="coproporphyrinogen III oxidase, aerobic. (SW:HEM6_SALTY)" /codon_start=1 /transl_table=11 /product="coproporphyrinogen III oxidase" /protein_id="NP_461386.1" /db_xref="GI:16765771" /db_xref="GeneID:1253973" /translation="MKPDAHHVKQFLLRLQDDICQTLSAVDGANFVEDSWRREAGGGG RSRVLRNGGIFEQAGVNFSHVHGDAMPASATAHRPELAGRSFEAMGVSLVVHPHNPYI PTSHANVRFFIAEKPGADPVWWFGGGFDLTPYYGFEEDAVHWHRTARDLCQPFGDDVY PRYKKWCDDYFFLKHRNEQRGVGGLFFDDLNTPDFDHCFDFMQAVGNGYTRAYLPIVE RRKAMVWGERERNFQLYRRGRYVEFNLVWDRGTLFGLQTGGRTESILMSMPPLVRWEY DWQPEAGSPEAALSEFIQVRDWI" gene 2562124..2562453 /locus_tag="STM2452" /db_xref="GeneID:1253974" CDS 2562124..2562453 /locus_tag="STM2452" /note="hypothetical protein in eutR-hemF intergenic region (ORF33). (SW:YPFK_SALTY)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461387.1" /db_xref="GI:16765772" /db_xref="GeneID:1253974" /translation="MQTNTRKVVTSDAKWHPHLGISFIGCLLAITLEIYFEERIFIPH SGGVSFGLIVLLVINMVTIPVVMALIALLCFIIHIPRKSVNCILLCLLSCILTIAGLF IAYPVGR" gene 2562575..2563859 /locus_tag="STM2453" /db_xref="GeneID:1253975" regulatory 2562575..2562580 /regulatory_class="ribosome_binding_site" /locus_tag="STM2453" /note="putative RBS for STM2453; RegulonDB:STMS1H002570" CDS 2562582..2563859 /locus_tag="STM2453" /note="hypothetical 30.0 Kda protein in eutR-hemF intergenic region (ORF79). (SW:YPFL_SALTY)" /codon_start=1 /transl_table=11 /product="DUF1963 domain-containing protein" /protein_id="NP_461388.1" /db_xref="GI:16765773" /db_xref="GeneID:1253975" /translation="MDERIPCKNPQCSHFILPATAARTEGYCMPCVQARYRQVQEEYI RKNRKTIDAFSGITNPVEMLKLVHEPREHDPLIEWIPCPIPTDELYKKLSDDESRDMV DYAEELFDSGWQEEAQEIALCLAAFTQANLDNFLRQVINEEELELSSPLPFHRAPPDV RDALLQKVETDDENRDGILCALAWIGDEVVVEHFNRWRQEPPAWSASLHILPHRYAHQ AGWELTENGRRRDLYFTQCTHLVKQAPEQPAVFRAVAEYGENCPHCSLPLINLFEVAP SAVGLSTQGWPGQIRILTCQCCTAYNTVFATVDPQGQPRWYEKNALSTLAVENSADWI TLPLDVLHPGESRLPLFAAEIFLPTTFSQLGGHPAWVQDTDYPTCPTCAQTMMFLAQL SYEDIEEEEYAEGMLYGFICPSCQTTATSYQQT" gene complement(2564059..2565126) /gene="eutR" /locus_tag="STM2454" /db_xref="GeneID:1253976" CDS complement(2564059..2565111) /gene="eutR" /locus_tag="STM2454" /note="AraC/XylS family; ethanolamine operon regulatory protein. (SW:EUTR_SALTY)" /codon_start=1 /transl_table=11 /product="ethanolamine utilization protein EutR" /protein_id="NP_461389.1" /db_xref="GI:16765774" /db_xref="GeneID:1253976" /translation="MKKTRTANLHHLYHEALPEDVKLTPRVEVDNVHQRRTTDVYEHA LTITAWQQIYDQLHPGKFHGEFTEILLDEIQVFREYTGLALRQSCLVWPNSFWFGIPA TRGEQGFIGAQGLGSAEIATRPGGTEFELSTPDDYTILGVVISEDVISRQATFLHNPE RVLHMLRNQLALEVKEQHKAALWGFVQQALATFSESPETLHQPAVRKVLSDNLLLAMG TMLEEAKPIHSAESISHQGYRRLLSRAREYVLENMSEPLTVLDLCNQLHVSRRTLQNA FHAILGIGPNAWLKRIRLNAVRRELISPWSQSATVKDAAMQWGFWHLGQFATDYQQLF AEKPSLTLHQRMRQWA" regulatory complement(2565121..2565126) /regulatory_class="ribosome_binding_site" /gene="eutR" /locus_tag="STM2454" /note="putative RBS for eutR; RegulonDB:STMS1H002571" gene complement(2565159..2565666) /gene="eutK" /locus_tag="STM2455" /db_xref="GeneID:1253977" CDS complement(2565159..2565653) /gene="eutK" /locus_tag="STM2455" /note="ethanolamine utilization; ethanolamine utilization protein EUTK precursor. (SW:EUTK_SALTY)" /codon_start=1 /transl_table=11 /product="ethanolamine utilization protein EutK" /protein_id="NP_461390.1" /db_xref="GI:16765775" /db_xref="GeneID:1253977" /translation="MINALGLLEVDGMVAAVDAADAMLKAANVRLLSHQVLDPGRLTL VVEGDLAACRAALDAGSAAAQRTGRVISRKEIGRPEEDTQWLIGGFARATTPTEKAPQ VPATPEFAEALLALLASVRQGMTAGEVAAHFGWPLEQARNVLEQLFSDGALRKRSSRY RIKN" regulatory complement(2565661..2565666) /regulatory_class="ribosome_binding_site" /gene="eutK" /locus_tag="STM2455" /note="putative RBS for eutK; RegulonDB:STMS1H002572" gene complement(2565666..2566336) /gene="eutL" /locus_tag="STM2456" /db_xref="GeneID:1253978" CDS complement(2565666..2566325) /gene="eutL" /locus_tag="STM2456" /note="ethanolamine utilization; ethanolamine utilization protein EUTL. (SW:EUTL_SALTY)" /codon_start=1 /transl_table=11 /product="microcompartment protein EutL" /protein_id="NP_461391.1" /db_xref="GI:16765776" /db_xref="GeneID:1253978" /translation="MPALDLIRPSVTAMRVIASVNDGFARELKLPPHIRSLGLITADS DDVTYIAADEATKQAMVEVVYGRSLYAGAAHGPSPTAGEVLIMLGGPNPAEVRAGLDA MVASIENGAAFQWANDAENTAFLAHVVSRTGSYLSSTAGIALGDPMAYLVAPPLEATF GIDAAMKSADVQLVTYVPPPSETNYSAAFLTGSQAACKAACNAFTDAVLDIARNPVQR A" regulatory complement(2566331..2566336) /regulatory_class="ribosome_binding_site" /gene="eutL" /locus_tag="STM2456" /note="putative RBS for eutL; RegulonDB:STMS1H002573" gene complement(2566335..2567245) /gene="eutC" /locus_tag="STM2457" /db_xref="GeneID:1253979" CDS complement(2566335..2567231) /gene="eutC" /locus_tag="STM2457" /EC_number="4.3.1.7" /note="ethanolamine ammonia-lyase light chain. (SW:EUTC_SALTY)" /codon_start=1 /transl_table=11 /product="ethanolamine ammonia-lyase small subunit" /protein_id="NP_461392.1" /db_xref="GI:16765777" /db_xref="GeneID:1253979" /translation="MDQKQIEEIVRSVMASMGQDVPQPAAPSTQEGAKPQCAAPTVTE SCALDLGSAEAKAWIGVENPHRADVLTELRRSTAARVCTGRAGPRPRTQALLRFLADH SRSKDTVLKEVPEEWVKAQGLLEVRSEISDKNLYLTRPDMGRRLSPEAIDALKSQCVM NPDVQVVVSDGLSTDAITANYEEILPPLLAGLKQAGLNVGTPFFVRYGRVKIEDQIGE ILGAKVVILLVGERPGLGQSESLSCYAVYSPRVATTVEADRTCISNIHQGGTPPVEAA AVIVDLAKRMLEQKASGINMTR" regulatory complement(2567240..2567245) /regulatory_class="ribosome_binding_site" /gene="eutC" /locus_tag="STM2457" /note="putative RBS for eutC; RegulonDB:STMS1H002574" gene complement(2567250..2568624) /gene="eutB" /locus_tag="STM2458" /db_xref="GeneID:1253980" CDS complement(2567250..2568611) /gene="eutB" /locus_tag="STM2458" /EC_number="4.3.1.7" /note="ethanolamine ammonia-lyase heavy chain. (SW:EUTB_SALTY)" /codon_start=1 /transl_table=11 /product="ethanolamine ammonia-lyase large subunit" /protein_id="NP_461393.1" /db_xref="GI:16765778" /db_xref="GeneID:1253980" /translation="MKLKTTLFGNVYQFKDVKEVLAKANELRSGDVLAGVAAASSQER VAAKQVLSEMTVADIRNNPVIAYEEDCVTRLIQDDVNETAYNRIKNWSISELREYVLS DETSVDDIAFTRKGLTSEVVAAVAKICSNADLIYGGKKMPVIKKANTTIGIPGTFSCR LQPNDTRDDVQSIAAQIYEGLSFGAGDAVIGVNPVTDDVENLTRVLDTVYGVIDKFNI PTQGCVLAHVTTQIEAIRRGAPGGLIFQSICGSEKGLKEFGVELAMLDEARAVGAEFN RIAGENCLYFETGQGSALSAGANFGADQVTMEARNYGLARHYDPFLVNTVVGFIGPEY LYNDRQIIRAGLEDHFMGKLSGISMGCDCCYTNHADADQNLNENLMILLATAGCNYIM GMPLGDDIMLNYQTTAFHDTATVRQLLNLRPSPEFERWLETMGIMANGRLTKRAGDPS LFF" regulatory complement(2568619..2568624) /regulatory_class="ribosome_binding_site" /gene="eutB" /locus_tag="STM2458" /note="putative RBS for eutB; RegulonDB:STMS1H002575" gene complement(2568623..2570040) /gene="eutA" /locus_tag="STM2459" /db_xref="GeneID:1253981" CDS complement(2568623..2570026) /gene="eutA" /locus_tag="STM2459" /note="chaperonin in ethanolamine utilization; ethanolamine utilization protein EUTA. (SW:EUTA_SALTY)" /codon_start=1 /transl_table=11 /product="ethanolamine utilization protein EutA" /protein_id="NP_461394.1" /db_xref="GI:16765779" /db_xref="GeneID:1253981" /translation="MNTRQLLSVGIDIGTTTTQVIFSRLELVNRAAVSQVPRYEFIKR DISWQSPVFFTPVDKQGGLKEVELKALILAQYQAAGIAPESVDSGAIIITGESAKTRN ARPAVMALSQSLGDFVVASAGPHLESVIAGHGAGAQSLSEQRMCRVLNIDIGGGTSNY ALFDAGKVSGTACLNVGGRLLETDAQGRVVYAHQPGQMIIDEVFGSGTDARALAAAQL GQVARRMADLIVEVITGALSPLAQSLMQTGLLPADITPEVITLSGGVGECYRNQPADP FCFSDIGPLLATALHEHPRLREMNVQFPAQTVRATVIGAGAHTLSLSGSTIWLEDVQL PLRNLPVAIPQDDADLVNAWRQALLQLDLDPQTDAYVLALPATLPVRYAALLTVINAL TAFVARYPNPHPLLVVAEQDFGKALGMLLRPQLPQLPLAVIDEVVVRAGDYIDIGTPL FGGSVVPVTVKSLAFPS" gene complement(2570023..2571264) /gene="eutH" /locus_tag="STM2460" /db_xref="GeneID:1253982" CDS complement(2570023..2571249) /gene="eutH" /locus_tag="STM2460" /note="ethanolamine utilization; ethanolamine utilization protein EUTH . (SW:EUTH_SALTY)" /codon_start=1 /transl_table=11 /product="ethanolamine utilization protein EutH" /protein_id="NP_461395.1" /db_xref="GI:16765780" /db_xref="GeneID:1253982" /translation="MGINEIIMYIMMFFMLIAAVDRILSQFGGSARFLGKFGKSIEGS GGQFEEGFMAMGALGLAMVGMTALAPVLAHVLGPVIIPVYEMLGANPSMFAGTLLACD MGGFFLAKELAGGDVAAWLYSGLILGSMMGPTIVFSIPVALGIIEPSDRRYLALGVLA GIVTIPIGCIAGGLIAMYSGVQINGQPVEFTFALILMNMIPVLIVAVLVALGLKFIPE KMINGFQIFAKFLVALITIGLAAAVVKFLLGWELIPGLDPIFMAPGDKPGEVMRAIEV IGSISCVLLGAYPMVLLLTRWFEKPLMNVGKLLNVNNIAAAGMVATLANNIPMFGMMK QMDTRGKVINCAFAVSAAFALGDHLGFAAANMNAMIFPMIVGKLIGGVTAIGVAMMLV PKDDAAQVKTEAEAQS" regulatory complement(2570035..2570040) /regulatory_class="ribosome_binding_site" /gene="eutH" /locus_tag="STM2460" /note="putative RBS for eutA; RegulonDB:STMS1H002576" regulatory complement(2571259..2571264) /regulatory_class="ribosome_binding_site" /gene="eutH" /locus_tag="STM2460" /note="putative RBS for eutH; RegulonDB:STMS1H002577" gene complement(2571369..2572569) /gene="eutG" /locus_tag="STM2461" /db_xref="GeneID:1253983" CDS complement(2571369..2572556) /gene="eutG" /locus_tag="STM2461" /note="ethanolamine utilization protein EUTG. (SW:EUTG_SALTY)" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase EutG" /protein_id="NP_461396.1" /db_xref="GI:16765781" /db_xref="GeneID:1253983" /translation="MQAELQTALFQAFDTLNLQRVKTFSVPPVTLCGLGALGACGQEA QARGVSHLFVMVDSFLHQAGMTAPLARSLAMKGVAMTVWPCPPGEPCITDVCAAVAQL REAACDGVVAFGGGSVLDAAKAVALLVTNPDQTLSAMTEHSTLRPRLPLIAVPTTAGT GSETTNVTVIIDAVSGRKQVLAHASLMPDVAILDAAVTEGVPPNVTAMTGIDALTHAI EAYSALNATPFTDSLAIGAIAMIGKSLPKAVGYGHDLAARENMLLASCMAGMAFSSAG LGLCHAMAHQPGAALHIPHGQANAMLLPTVMGFNRMVCRERFSQIGRALTNKKSDDRD AIAAVCELIAEVGQSKRLADAGAKPEHYSAWAQAALEDICLRSNPRTATQAQIIDLYA AAG" gene complement(2572546..2573397) /gene="eutJ" /locus_tag="STM2462" /db_xref="GeneID:1253984" CDS complement(2572546..2573385) /gene="eutJ" /locus_tag="STM2462" /note="ethanolamine utilization protein EUTJ. (SW:EUTJ_SALTY)" /codon_start=1 /transl_table=11 /product="ethanolamine utilization protein EutJ" /protein_id="NP_461397.1" /db_xref="GI:16765782" /db_xref="GeneID:1253984" /translation="MAHDEQLWLTPRLQKAAALCNQTPAASDTPLWLGVDLGTCDVVS MVVDGNAQPVAVCLDWADVVRDGIVWDFFGAVTLVRRHLDTLEQQLGCRFTHAATSFP PGTDPRISINVLESAGLEVSHVLDEPTAVADLLALDNAGVVDIGGGTTGIAIVKQGKV TYSADEATGGHHISLTLAGNRRIPLEEAEQYKRSNAQEIWPVVKPVYEKMAEIVARHI EGQGIADLWLAGGSCMQPGVEALFRQRFPELQVHLPQHSLFMTPLAIANSGRAKAEGL YAS" regulatory complement(2572564..2572569) /regulatory_class="ribosome_binding_site" /gene="eutJ" /locus_tag="STM2462" /note="putative RBS for eutG; RegulonDB:STMS1H002578" regulatory complement(2573392..2573397) /regulatory_class="ribosome_binding_site" /gene="eutJ" /locus_tag="STM2462" /note="putative RBS for eutJ; RegulonDB:STMS1H002579" gene complement(2573396..2574813) /gene="eutE" /locus_tag="STM2463" /db_xref="GeneID:1253985" CDS complement(2573396..2574799) /gene="eutE" /locus_tag="STM2463" /note="ethanolamine utilization protein EUTE. (SW:EUTE_SALTY)" /codon_start=1 /transl_table=11 /product="aldehyde dehydrogenase EutE" /protein_id="NP_461398.1" /db_xref="GI:16765783" /db_xref="GeneID:1253985" /translation="MNQQDIEQVVKAVLLKMKDSSQPASTVHEMGVFASLDDAVAAAK RAQQGLKSVAMRQLAIHAIREAGEKHARELAELAVSETGMGRVDDKFAKNVAQARGTP GVECLSPQVLTGDNGLTLIENAPWGVVASVTPSTNPAATVINNAISLIAAGNSVVFAP HPAAKKVSQRAITLLNQAVVAAGGPENLLVTVANPDIETAQRLFKYPGIGLLVVTGGE AVVDAARKHTNKRLIAAGAGNPPVVVDETADLPRAAQSIVKGASFDNNIICADEKVLI VVDSVADELMRLMEGQHAVKLTAAQAEQLQPVLLKNIDERGKGTVSRDWVGRDAGKIA AAIGLNVPDQTRLLFVETPANHPFAVTEMMMPVLPVVRVANVEEAIALAVQLEGGCHH TAAMHSRNIDNMNQMANAIDTSIFVKNGPCIAGLGLGGEGWTTMTITTPTGEGVTSAR TFVRLRRCVLVDAFRIV" regulatory complement(2574808..2574813) /regulatory_class="ribosome_binding_site" /gene="eutE" /locus_tag="STM2463" /note="putative RBS for eutE; RegulonDB:STMS1H002580" gene complement(2574811..2575110) /gene="eutN" /locus_tag="STM2464" /db_xref="GeneID:1253986" CDS complement(2574811..2575110) /gene="eutN" /locus_tag="STM2464" /note="ethanolamine utilization protein EUTN. (SW:EUTN_SALTY)" /codon_start=1 /transl_table=11 /product="putative detox protein in ethanolamine utilization" /protein_id="NP_461399.3" /db_xref="GI:1109557697" /db_xref="GeneID:1253986" /translation="MEADMKLAVVTGQIVCTVRHQGLAHDKLLMVEMIDAQGNPDGQC AVAIDSIGAGTGEWVLLVSGSSARQAHRSELSPVDLCVIGIVDEVVAGGKVVFHK" gene complement(2575211..2575513) /gene="eutM" /locus_tag="STM2465" /db_xref="GeneID:1253987" CDS complement(2575211..2575501) /gene="eutM" /locus_tag="STM2465" /note="ethanolamine utilization protein EUTM precursor. (SW:EUTM_SALTY)" /codon_start=1 /transl_table=11 /product="ethanolamine utilization protein EutM" /protein_id="NP_461400.1" /db_xref="GI:16765785" /db_xref="GeneID:1253987" /translation="MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAM VRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPISFKGDSNI" regulatory complement(2575508..2575513) /regulatory_class="ribosome_binding_site" /gene="eutM" /locus_tag="STM2465" /note="putative RBS for eutM; RegulonDB:STMS1H002581" gene complement(2575542..2576566) /gene="eutD" /locus_tag="STM2466" /db_xref="GeneID:1253988" CDS complement(2575542..2576558) /gene="eutD" /locus_tag="STM2466" /note="ethanolamine utilization protein EUTD. (SW:EUTD_SALTY)" /codon_start=1 /transl_table=11 /product="phosphate acetyltransferase" /protein_id="NP_461401.1" /db_xref="GI:16765786" /db_xref="GeneID:1253988" /translation="MIIERARELAVRAPARVVFPDALDERVLKAAHYLQQYGLARPVL VASPFALRQFALSHRMAMDGIQVIDPHSNLSMRQRFAQRWLARAGEKTPPDAVEKLSD PLMFAAAMVSAGEADVCIAGNLSSTANVLRAGLRVIGLQPGCKTLSSIFLMLPQYAGP ALGFADCSVVPQPTAAQLADIALASADTWRAITGEEPRVAMLSFSSNGSARHPNVANV QQATELVRERAPQLLVDGELQFDAAFVPEVAAQKAPDSPLQGRANVMIFPSLEAGNIG YKITQRLGGYRAVGPLIQGLAAPLHDLSRGCSVQEIIELALVAAVPRQADVSRERSLH TLVE" gene complement(2576555..2577370) /gene="eutT" /locus_tag="STM2467" /db_xref="GeneID:1253989" CDS complement(2576555..2577358) /gene="eutT" /locus_tag="STM2467" /EC_number="2.5.1.17" /note="ethanolamine utilization cobalamin adenosyltransferase. (SW:EUTT_SALTY)" /codon_start=1 /transl_table=11 /product="cobalamin adenosyltransferase" /protein_id="NP_461402.1" /db_xref="GI:16765787" /db_xref="GeneID:1253989" /translation="MNDFITETWLRANHTLSEGSEIHLPADARLTPSARELLESRRLR IKFLDPQGRLFVDDDEQQPQPVHGLTSSDTHPQACCELCRQPVVKKPDTLTHLTADKM VAKSDPRLGFRAALDSAIALTVWLQIELAEPWQPWLFDIRSRLGNIMRADAIDEPLAA QSIVGLNEDELHRLSHQPLRYLDHDHLVPEASHGRDAALLNLLRTKVRETETLAAQVF ITRSFEVLRPDILQALNRLSSTVYVMMILSVAKHPLTVAQIQQRLGEKP" regulatory complement(2576561..2576566) /regulatory_class="ribosome_binding_site" /gene="eutT" /locus_tag="STM2467" /note="putative RBS for eutD; RegulonDB:STMS1H002582" gene complement(2577355..2578060) /gene="eutQ" /locus_tag="STM2468" /db_xref="GeneID:1253990" CDS complement(2577355..2578044) /gene="eutQ" /locus_tag="STM2468" /note="ethanolamine utilization protein EUTQ. (SW:EUTQ_SALTY)" /codon_start=1 /transl_table=11 /product="ethanolamine utilization protein EutQ" /protein_id="NP_461403.1" /db_xref="GI:16765788" /db_xref="GeneID:1253990" /translation="MKKLITANDIRAAHARGEQAMSVVLRASIITPEAREVAELLGFT ITECDESVPASTSAQACKSESQRIREAIIAQLPEGQFTESLVAQLMEKVLKEKQSLEL GTMQPSFTSVTGKGGVKVIDGSSVKFGRFDGAEPHCVGLTDLVTEQDGSSMAAGFMQW DNAFFPWTLNYDEIDMVLEGELHVRHEGETMIAKAGDVMFIPKGSSIEFGTPTSVRFL YVAWPANWQSV" regulatory complement(2577365..2577370) /regulatory_class="ribosome_binding_site" /gene="eutQ" /locus_tag="STM2468" /note="putative RBS for eutT; RegulonDB:STMS1H002583" gene complement(2578022..2578510) /gene="eutP" /locus_tag="STM2469" /db_xref="GeneID:1253991" CDS complement(2578022..2578501) /gene="eutP" /locus_tag="STM2469" /note="ethanolamine utilization protein EUTP. (SW:EUTP_SALTY)" /codon_start=1 /transl_table=11 /product="ethanolamine utilization protein EutP" /protein_id="NP_461404.1" /db_xref="GI:16765789" /db_xref="GeneID:1253991" /translation="MKRIAFVGAVGAGKTTLFNALRGNYSLARKTQAVEFNDHGDIDT PGEYFSHPRWYHALITTLQDVDTLIYVHAANDKESRLPAGLLDVGTRKRHIAVISKTD MPDADVAATRQLLCEIGFREPIFELNGHDPQSVRQLVDYLAALSEQEEEAGEKTYHS" regulatory complement(2578055..2578060) /regulatory_class="ribosome_binding_site" /gene="eutP" /locus_tag="STM2469" /note="putative RBS for eutQ; RegulonDB:STMS1H002584" regulatory complement(2578505..2578510) /regulatory_class="ribosome_binding_site" /gene="eutP" /locus_tag="STM2469" /note="putative RBS for eutP; RegulonDB:STMS1H002585" gene complement(2578514..2578865) /gene="eutS" /locus_tag="STM2470" /db_xref="GeneID:1253992" CDS complement(2578514..2578849) /gene="eutS" /locus_tag="STM2470" /note="ethanolamine utilization protein EUTS. (SW:EUTS_SALTY)" /codon_start=1 /transl_table=11 /product="ethanolamine utilization protein EutS" /protein_id="NP_461405.1" /db_xref="GI:16765790" /db_xref="GeneID:1253992" /translation="MNKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIM TLTPGETAMIAGDLAMKAADVHIGFLDRFSGALVIYGTVGAVEEALLQTVSGLGRLLN FTLCELTKS" regulatory complement(2578860..2578865) /regulatory_class="ribosome_binding_site" /gene="eutS" /locus_tag="STM2470" /note="putative RBS for eutS; RegulonDB:STMS1H002586" mobile_element complement(2579223..2579931) /mobile_element_type="insertion sequence:IS200_3" gene complement(2579330..2579794) /gene="tnpA_3" /locus_tag="STM2471" /db_xref="GeneID:1253993" CDS complement(2579330..2579788) /gene="tnpA_3" /locus_tag="STM2471" /note="transposase for insertion sequence element is200 (SW:T200_SALTY)" /codon_start=1 /transl_table=11 /product="IS200 family transposase" /protein_id="NP_461406.1" /db_xref="GI:16765791" /db_xref="GeneID:1253993" /translation="MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKL CEWKNVRILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRN REFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTGRK" regulatory complement(2579789..2579794) /regulatory_class="ribosome_binding_site" /gene="tnpA_3" /locus_tag="STM2471" /note="putative RBS for tnpA_3; RegulonDB:STMS1H002587" gene complement(2579978..2582270) /gene="maeB" /locus_tag="STM2472" /db_xref="GeneID:1253994" CDS complement(2579978..2582257) /gene="maeB" /locus_tag="STM2472" /EC_number="1.1.1.40" /note="NADP-dependent malic enzyme. (SW:MAO2_SALTY)" /codon_start=1 /transl_table=11 /product="NADP-dependent malic enzyme" /protein_id="NP_461407.1" /db_xref="GI:16765792" /db_xref="GeneID:1253994" /translation="MDEQLKQSALDFHEFPVPGKIQVSPTKPLATQRDLALAYSPGVA APCLEIEKDPLAAYKYTARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFKKFA GIDVFDIEVDELDPDKFINVVAALEPTFGGINLEDIKAPECFYIEQKLRERMNIPVFH DDQHGTAIISTAAILNGLRVVEKNISDVRMVVSGAGAAAIACMNLLVALGMQKHNIVV CDSKGVIYKGREPNMAETKAAYAVDDSGKRTLDEVIDGADIFLGCSGPKVLTQEMVKK MARAPMILALANPEPEILPPLAKEVRPDAIICTGRSDYPNQVNNVLCFPFIFRGALDV GATAINEEMKLAAVRAIAELAHAEQSEVVASAYGDQDLSFGPEYIIPKPFDPRLIVKI APAVAKAAMDSGVATRPIADFDAYIDKLTEFVYKTNLFMKPIFSQARKDPKRVVLPEG EEARVLHATQELITLGLAKPILIGRPSVIEMRIQKLGLQIKAGVDFEIVNNESDPRFK EYWSEYYQIMKRRGITQEQAQRAMIGNHTAIGAIMVQRGEADAMICGTIGDYHEHFSV VKAVFGYRDGVHTAGAMNALLLPSGNTFIADTYVNEDPTPEQLAEIAVMAAETVRRFG IEPKVALLSHSNFGSSNSLSASKMRETLERVRERAPDLMIDGEMHGDAALVESIRNDR MPDSPLKGAANILVMPNMEAARISYNLLRVSSSEGVTVGPVLMGVSKPVHVLTPIASV RRIVNMVALAVVEAQTTPL" regulatory complement(2582265..2582270) /regulatory_class="ribosome_binding_site" /gene="maeB" /locus_tag="STM2472" /note="putative RBS for maeB; RegulonDB:STMS1H002588" gene 2582515..2583479 /gene="talA" /locus_tag="STM2473" /db_xref="GeneID:1253995" regulatory 2582515..2582520 /regulatory_class="ribosome_binding_site" /gene="talA" /locus_tag="STM2473" /note="putative RBS for talA; RegulonDB:STMS1H002589" CDS 2582529..2583479 /gene="talA" /locus_tag="STM2473" /EC_number="2.2.1.2" /note="similar to E. coli transaldolase A (AAC75517.1); Blastp hit to AAC75517.1 (316 aa), 89% identity in aa 1 - 316" /codon_start=1 /transl_table=11 /product="transaldolase" /protein_id="NP_461408.1" /db_xref="GI:16765793" /db_xref="GeneID:1253995" /translation="MNQLDGIKQFTTVVADSGDIESIRHYQPQDATTNPSLLLKAAGL EQYGHLIEDAIAWGKKHGGTQEQQVAAASDKLAVNFGAEILKSIPGRVSTEVDARLSF DKEKSIEKARHLVDLYQQQGVDKSRILIKLAATWEGIRAAGQLEKEGINCNLTLLFSF AQARACAEAGVYLISPFVGRIYDWYQARSPLEPYVVEEDPGVKSVRNIYDYFKQHRYE TIVMGASFRRTEQILALTGCDRLTISPNLLKELKEKEEPVIRKLVPSSQMFHRPTPMT EAEFRWEHNQDAMAVEKLSEGIRLFAVDQRKLEDLLAAKL" gene 2583487..2585499 /gene="tktB" /locus_tag="STM2474" /db_xref="GeneID:1253996" regulatory 2583487..2583492 /regulatory_class="ribosome_binding_site" /gene="tktB" /locus_tag="STM2474" /note="putative RBS for tktB; RegulonDB:STMS1H002590" CDS 2583499..2585499 /gene="tktB" /locus_tag="STM2474" /EC_number="2.2.1.1" /note="similar to E. coli transketolase 2 isozyme (AAC75518.1); Blastp hit to AAC75518.1 (667 aa), 92% identity in aa 1 - 666" /codon_start=1 /transl_table=11 /product="transketolase" /protein_id="NP_461409.1" /db_xref="GI:16765794" /db_xref="GeneID:1253996" /translation="MSRKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFL KHNPTDPTWYDRDRFILSNGHASMLLYSLLHLTGYDLPLEELKNFRQLHSKTPGHPEI GYTPGVETTTGPLGQGLANAVGLAIAERTLGAQFNRPDHEIVDHYTYVFMGDGCLMEG ISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVVHDIDGH DPEAVKKAILEAQSVKDKPSLIICRTVIGFGSPNKAGKEESHGAALGEEEVALTRQKL GWHHPAFEIPKEIYRAWDGREKGEKAQQQWQEKFAAYEKAYPELAAEFTRRMSGGLPE AWESATQKFINDLQANPAKIATRKASQNTLNAYGPLLPELLGGSADLAPSNLTIWKGS TSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALM KARQIMVYTHDSIGLGEDGPTHQAVEQLASLRLTPNFSTWRPCDQVEAAVGWKLAIER QHGPTALILSRQNLAQVERTPEQVKAIARGGYILKDSGGKPDIILIATGSEMEITLQA AEKLTGEGHNVRVVSLPSTDIFDAQDEAYRESVLPAHVTARVAVEAGIADYWYKYVGL KGAIIGMTGYGESAPADKLFPYFGFTVENIVEKARRVLNIKG" gene complement(2585562..2585800) /locus_tag="STM2475" /db_xref="GeneID:1253997" CDS complement(2585562..2585792) /locus_tag="STM2475" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461410.1" /db_xref="GI:16765795" /db_xref="GeneID:1253997" /translation="MKINNGPVLCPHCGCLSAYYEIDRLAAIREKVNKEGGSAAWDST LQAHKKKAFCLMCHKSIDEVVIGQSDAPESTK" regulatory complement(2585795..2585800) /regulatory_class="ribosome_binding_site" /locus_tag="STM2475" /note="putative RBS for STM2475; RegulonDB:STMS1H002591" gene complement(2585920..2586980) /gene="ypfG" /locus_tag="STM2476" /db_xref="GeneID:1253998" CDS complement(2585920..2586963) /gene="ypfG" /locus_tag="STM2476" /note="similar to E. coli orf, hypothetical protein (AAC75519.1); Blastp hit to AAC75519.1 (347 aa), 77% identity in aa 1 - 347" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461411.1" /db_xref="GI:16765796" /db_xref="GeneID:1253998" /translation="MRYRVILFCLFGLLPVQLLWAAPAQRTFSDWQVTCNNQNFCVAR NTGEHHGLVMTLSRSAGARTDAVLRIDRGGLAPPDAKEAAIAPRLLLDGKPLSFNSPH WRVSPWHLMTGDPATITAFLQTIQDAQAITLKNGVQTLSLAGLKAALLFIDAQQKRVG SETAWIEKGNEPPLSVPPAPALKGIAVINPTPVPLSEEERDDLLDYAAWRVNGIRCSL DPLRRETQVSALTDDKALLIVNCEAGAYNTIDLAWVVSRKKTLVSRAVRLRLPFNRGV ESNDMELMNVFFDEKTRELVTLAKGRGLTDCGIQTRWRYDGDRFRLVRYAEEPSCDSW HGPDAWPTLWITR" regulatory complement(2586975..2586980) /regulatory_class="ribosome_binding_site" /gene="ypfG" /locus_tag="STM2476" /note="putative RBS for ypfG; RegulonDB:STMS1H002592" gene complement(2587088..2587674) /gene="yffH" /locus_tag="STM2477" /db_xref="GeneID:1253999" CDS complement(2587088..2587663) /gene="yffH" /locus_tag="STM2477" /note="similar to E. coli orf, hypothetical protein (AAC75520.1); Blastp hit to AAC75520.1 (191 aa), 87% identity in aa 1 - 191" /codon_start=1 /transl_table=11 /product="GDP-mannose pyrophosphatase NudK" /protein_id="NP_461412.1" /db_xref="GI:16765797" /db_xref="GeneID:1253999" /translation="MSQTITLIKDKILSDNYFTLRNITYDLTRRNGEVIRHKREVYDR GNGATILLYNSTKKTVVLVRQFRVATWVNGNQDGMLIETCAGLLDNDEPEVCIRKEAI EETGYDVGEVRKIFELYMSPGGVTELIHFFIAEYHDSERASIGGGVEDEEIEVLELPF SRALEMVRSGEIRDGKTVLLLNYLQTSHLMD" regulatory complement(2587669..2587674) /regulatory_class="ribosome_binding_site" /gene="yffH" /locus_tag="STM2477" /note="putative RBS for yffH; RegulonDB:STMS1H002593" gene 2587855..2589165 /locus_tag="STM2478" /db_xref="GeneID:1254000" regulatory 2587855..2587860 /regulatory_class="ribosome_binding_site" /locus_tag="STM2478" /note="putative RBS for STM2478; RegulonDB:STMS1H002594" CDS 2587867..2589165 /locus_tag="STM2478" /note="similar to E. coli putative beta-lactamase (AAC75483.1); Blastp hit to AAC75483.1 (463 aa), 72% identity in aa 30 - 461" /codon_start=1 /transl_table=11 /product="penicillin-binding protein PBP4B" /protein_id="NP_461413.1" /db_xref="GI:16765798" /db_xref="GeneID:1254000" /translation="MKFTLVATVLLTFSLSAFAVEYPVLTTASPDQVGFDSQKLHRLD GWIQNQIDAGYPSINLLVIKDNHIVLQKAWGYAKKYDGSTLLAHPIRATTNTMYDLAS NTKMYATNFALQKLVYEGKIDVNDLVSKYIPGFKDMPGDKIKGKNKLRIIDILHHVAG FPADPQYPNKNVAGKLFSQSKSTTLEMIKKTPLEYQPGSKHIYSDVDYMILGFIIESI TAMPLDRYVETTIYKPLGLKHTVFNPLMKGFTPPQIAATELHGNTRDGVIHFPNIRTN TLWGQVHDEKAWYSMGGVSGHAGLFSDTHDMAVLMQVMLNGGGYGNVKLFDDKTVAQF TRRSPEDATFGLGWRVNGNASMTPTFGVLASPQTYGHTGWTGTLTSIDPVNHMAIVIL GNRPHSPVANPKVNPNVFVSGLLPAATYGWIVDQIYGSLK" gene complement(2589614..2591584) /gene="aegA" /locus_tag="STM2479" /db_xref="GeneID:1254001" CDS complement(2589614..2591575) /gene="aegA" /locus_tag="STM2479" /note="similar to E. coli putative oxidoreductase, Fe-S subunit (AAC75521.1); Blastp hit to AAC75521.1 (659 aa), 85% identity in aa 1 - 651" /codon_start=1 /transl_table=11 /product="oxidoreductase FeS-binding subunit" /protein_id="NP_461414.1" /db_xref="GI:16765799" /db_xref="GeneID:1254001" /translation="MNRFIMANSQQCLGCHACEVACVMAHNDERHVLTSQRYQPRITV IKHQHQRSAVTCHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTM QMVLTPVAPNQFKASAHKCDLCQGREQGPACVENCPADALQLVTEDSLTRLAKTRRLR TARQEIRPWHTVDTQHSGAASSKAERMQATPPRGEPDKLAIEARKTTFEEIYLPFRAA QAEREASRCLTCGEHSICEWTCPLHNHIPQWIELVKAGDIDAAVELSHQTNCLPEITG RVCPQDRLCEGACTLRDEYGAVTIGNIERYISDRALSKGWRPDLSDVQKSDKRVAIIG AGPAGLACADVLARHGVSATVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGI RFELNCEVGKDISLETLLESYDAVFVGVGTYRSMKADLPNEDAPGVYDALPFLIANTK QVMGLPALPDEPFIDTAGLNVVVLGGGDTAMDCVRTALRHGAANVTCAYRRDEANMPG SKKEVKNAREEGANFEFNVQPVELVLDTHGRASGIRFLRTRLGEPDGQGRRRPVPVPD SEFVMPADAVIMAFGFHPHGMSWLESHGVKVDNWGRIAASVESEFRYQTSNPKIFAGG DAVRGADLVVTAMAEGRHAAQGILDWLAK" regulatory complement(2591579..2591584) /regulatory_class="ribosome_binding_site" /gene="aegA" /locus_tag="STM2479" /note="putative RBS for aegA; RegulonDB:STMS1H002595" gene 2591746..2593461 /gene="narQ" /locus_tag="STM2480" /db_xref="GeneID:1254002" regulatory 2591746..2591751 /regulatory_class="ribosome_binding_site" /gene="narQ" /locus_tag="STM2480" /note="putative RBS for narQ; RegulonDB:STMS1H002596" CDS 2591761..2593461 /gene="narQ" /locus_tag="STM2480" /EC_number="2.7.3.-" /note="similar to E. coli sensor for nitrate reductase system, protein histidine kinase (acts on NarP and narL) (AAC75522.1); Blastp hit to AAC75522.1 (566 aa), 88% identity in aa 3 - 565" /codon_start=1 /transl_table=11 /product="two-component system sensor histidine kinase NarQ" /protein_id="NP_461415.1" /db_xref="GI:16765800" /db_xref="GeneID:1254002" /translation="MTVKRPVSASLAKAFFYIVLLSILSTGSALLTLTSSLRDAEAIN IAGSLRMQSYRLGYDLQSRSPQINAHRQLFQHALNSPVLQNLNAWYVPQAVKTRYERL HANWLEMNSRLQDGDIAWYQTNINNYVNQIDLFVLALQHYAERKVMLVVAISLAGGIG IFTLVFFTLRRIRQQVVRPLNQLVTASQRIEHGQFAPLPLDTSLPNELGLLAKTFSQM SSELHKLYRSLEASVEEKTHDLHEAHRRLEVLYQCSQALNTSQIDVHCFRHILQIVRE HDAAWYLELTVGDNWRISEGTQSPDLPMQMLPVTMQDTVYGELHWQSPNVNASTPLLN SVSTMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRAIP EDNAGAQSIMADFSRALNDAYRQLRELLTTFRLTLQQADLPSALHEMLEDLQSQTPAK LTLDCRLPTLALDAQMQVHLLQIVREAVLNAIKHANASEIAVSCVTAPDGDHTVYIRD NGIGIGEPHEPAGHYGLNIMRERAERLGGTLNFSQPSGGGTLVSISFRSSNKEESQLT " gene 2593632..2596759 /gene="acrD" /locus_tag="STM2481" /db_xref="GeneID:1254003" regulatory 2593632..2593637 /regulatory_class="ribosome_binding_site" /gene="acrD" /locus_tag="STM2481" /note="putative RBS for acrD; RegulonDB:STMS1H002597" CDS 2593646..2596759 /gene="acrD" /locus_tag="STM2481" /note="similar to E. coli sensitivity to acriflavine, integral membrane protein, possible efflux pump (AAC75523.1); Blastp hit to AAC75523.1 (1037 aa), 94% identity in aa 1 - 1037" /codon_start=1 /transl_table=11 /product="aminoglycoside/multidrug transporter subunit AcrD" /protein_id="NP_461416.1" /db_xref="GI:16765801" /db_xref="GeneID:1254003" /translation="MANFFIDRPIFAWVLAILLCLTGALAIFSLPVEQYPDLAPPNVR ITANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDE AVQQVQNQLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVAS NIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQ LGGTPSVDKQALNATINAQSLLQTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKYD YLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVK ASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINT LTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLS AVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQ RGFFGWFNRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQE DRGMFTTSIQLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVA RMFVRLKDWDARDPTTGSSFAIIERATKAFNQIKEARVFASSPPAISGLGSSAGFDME LQDHAGAGHDALMAARDQLIELAGKNSSLTRVRHNGLDDSPQLQIDIDQRKAQALGVS IDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAKYRMLPDDINLWYVRNKDGGMVP FSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAMDVMESLVHQLPGGFGLE WTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLAT WMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKGHALLDATLYASRQRLRPI LMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLIRRRF PLKPRPK" gene 2597322..2597689 /gene="yffB" /locus_tag="STM2482" /db_xref="GeneID:1254004" regulatory 2597322..2597327 /regulatory_class="ribosome_binding_site" /gene="yffB" /locus_tag="STM2482" /note="putative RBS for yffB; RegulonDB:STMS1H002598" CDS 2597333..2597689 /gene="yffB" /locus_tag="STM2482" /note="similar to E. coli orf, hypothetical protein (AAC75524.1); Blastp hit to AAC75524.1 (118 aa), 80% identity in aa 1 - 118" /codon_start=1 /transl_table=11 /product="Spx/MgsR family transcriptional regulator" /protein_id="NP_461417.1" /db_xref="GI:16765802" /db_xref="GeneID:1254004" /translation="MITLYGIKNCDTIKKARHWLEEHGIDYRFHDYRVDGIDLPLLNT FIAELGWQPLLNTRGTTWRKLDEGHRSGITDADSAAALMVEQPAIIKRPLLCAPGKPM LLGFSESRYQQFFDEV" gene 2597681..2598820 /gene="dapE" /locus_tag="STM2483" /db_xref="GeneID:1254005" regulatory 2597681..2597686 /regulatory_class="ribosome_binding_site" /gene="yffB" /locus_tag="STM2482" /note="putative RBS for dapE; RegulonDB:STMS1H002599" CDS 2597693..2598820 /gene="dapE" /locus_tag="STM2483" /EC_number="3.5.1.18" /note="similar to E. coli N-succinyl-diaminopimelate deacylase (AAC75525.1); Blastp hit to AAC75525.1 (375 aa), 94% identity in aa 1 - 375" /codon_start=1 /transl_table=11 /product="succinyl-diaminopimelate desuccinylase" /protein_id="NP_461418.1" /db_xref="GI:16765803" /db_xref="GeneID:1254005" /translation="MSCPVIELTQQLIRRPSLSPDDAGCQALMIERLRKIGFTIEHMD FGDTQNFWAWRGRGETLAFAGHTDVVPAGDVDRWINPPFEPTIRDGMLFGRGAADMKG SLAAMVVAAERFVAQHPHHRGRLAFLITSDEEASAKNGTVKVVEALMARNERLDYCLV GEPSSTEIVGDVVKNGRRGSLTCNLTIHGVQGHVAYPHLADNPVHRAAPFLNELVAIE WDRGNDFFPATSMQVANIQAGTGSNNVIPGELFVQFNFRFSTELTDEMIKERVHALLE KHQLRYTVDWWLSGQPFLTARGKLVDAVVNAIEHYNEIKPQLLTTGGTSDGRFIARMG AQVVELGPVNATIHKINECVNAADLQLLARMYQRIMEQLVA" gene 2598841..2599048 /locus_tag="STM2484" /db_xref="GeneID:1254006" regulatory 2598841..2598846 /regulatory_class="ribosome_binding_site" /locus_tag="STM2484" /note="putative RBS for STM2484; RegulonDB:STMS1H002600" CDS 2598848..2599048 /locus_tag="STM2484" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461419.1" /db_xref="GI:16765804" /db_xref="GeneID:1254006" /translation="MDWLAKYWWILVLVFLVGVLLNVIKDLKRIDHKKFLANKPELPP HRDFNDKWDDEDDWPKKDQPKK" gene complement(2599075..2601104) /gene="ypfI" /locus_tag="STM2485" /db_xref="GeneID:1254007" CDS complement(2599075..2601093) /gene="ypfI" /locus_tag="STM2485" /note="similar to E. coli orf, hypothetical protein (AAC75527.1); Blastp hit to AAC75527.1 (671 aa), 71% identity in aa 1 - 662" /codon_start=1 /transl_table=11 /product="tRNA cytosine(34) acetyltransferase TmcA" /protein_id="NP_461420.1" /db_xref="GI:16765805" /db_xref="GeneID:1254007" /translation="MSDIDALQALTSQMTQEGIRRLLVISGDAAWCRKRAEAIRAALP GDWLWVAPDAPAQPCCTPQALQTLLGREFRHAIFDAWQGFDAAAFAALSGTLQAGSWL LLLMPPYETWESRPDTDSLRWSDCAQPIPTPQFAQHLKRTLSRDPQTLLWRQRQPFCW PSYPSRECWRPATGEPQPEQAAILSRLREMPPGVATVIAPRGRGKSALAGQFISRMAG TAIVTAPAKTATDILAAFAGERFCFMAPDALLASGARADWLVVDEAAAIPTPLLLQLV SRFPRILLTTTVQGYEGTGRGFLLKFCARFPQLHRFTLRQPVRWAPECPLENIVSEAL IFDDEAFAQAPHGAIEISAFYQQAWVNTPALPRAVYQLLSGAHYRTSPLDLRRMMDAP GQHFLQATANNRVAGALWLVEEGGLSAELSQAVWCGFRRPRGNLVAQSLAAHGSDPLA ATLVGRRVSRIAVHPARQREGIGQQLIACACMQAAQCDYLSVSFGYTPKLWRFWQRCG FVLVRMGNHREASSGCYTAMALLPLSDAGKRLAQQEHRRLRRDADILTQWNGEAIPLA ALREQALNDEDWRELVGFAFAHRPLLTSLGCLHRLLQYSALPLPALRGRLEEKASDAE LCARLRISGRKALLALQRAQAAQALIALDAGRTQSLRDVMPGGGDHAG" regulatory complement(2601099..2601104) /regulatory_class="ribosome_binding_site" /gene="ypfI" /locus_tag="STM2485" /note="putative RBS for ypfI; RegulonDB:STMS1H002601" gene complement(2601109..2601981) /locus_tag="STM2486" /db_xref="GeneID:1254008" CDS complement(2601109..2601972) /locus_tag="STM2486" /note="similar to E. coli orf, hypothetical protein (AAC75528.1); Blastp hit to AAC75528.1 (287 aa), 92% identity in aa 1 - 286" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461421.1" /db_xref="GI:16765806" /db_xref="GeneID:1254008" /translation="MRWQGRRESNNVEDRRNRPGGPSLGGPGFRLPRGKGGIILLVVV LVAGYYGVDLTGLLTGQPVSQQQSTRSISPNDDEAAKFTSVILATTEDTWGQLFQKMG RGYQQPKLVMYRGMTRTGCGAGQSVMGPFYCPADGTVYIDLSFYDDMKNKLGADGDFA QGYVIAHEVGHHVQKLLGIEPKVRQLQQNASQTEVNRLSVRMELQADCFAGVWGHSMQ QQGVLEAGDLEEALNAAQAIGDDRLQQQGQGRVVPDSFTHGTSEQRYSWFKRGFDSGD PAQCNTFGKNF" regulatory complement(2601976..2601981) /regulatory_class="ribosome_binding_site" /locus_tag="STM2486" /note="putative RBS for STM2486; RegulonDB:STMS1H002602" gene complement(2602103..2602982) /gene="purC" /locus_tag="STM2487" /db_xref="GeneID:1254009" CDS complement(2602103..2602816) /gene="purC" /locus_tag="STM2487" /EC_number="6.3.2.6" /note="SAICAR synthetase; similar to E. coli phosphoribosylaminoimidazole-succinocarboxamide synthetase = SAICAR synthetase (AAC75529.1); Blastp hit to AAC75529.1 (237 aa), 94% identity in aa 1 - 237" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazolesuccinocarboxamide synthase" /protein_id="NP_461422.1" /db_xref="GI:16765807" /db_xref="GeneID:1254009" /translation="MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFD RKGMVNNKFNHFIMTKLAEAGIPTQMERLLSDTECLVKKLEMVPVECVVRNRAAGSLV KRLGVEEGMELNPPIFDLFLKNDALHDPMVNSSYCETFGWVSQENLARMKELTYKAND VLKKLFDDAGLILVDFKLEFGLYKGEVVLGDEFSPDGSRLWDKETLDKMDKDRFRQSL GGLIEAYEAVAHRLGVKLD" regulatory complement(2602825..2602830) /regulatory_class="ribosome_binding_site" /gene="purC" /locus_tag="STM2487" /note="putative RBS for purC; RegulonDB:STMS1H002603" protein_bind complement(2602932..2602946) /gene="purC" /locus_tag="STM2487" /note="putative binding site for PurR, RegulonDB: STMS1H000347" /bound_moiety="PurR" regulatory complement(2602955..2602963) /regulatory_class="minus_10_signal" /gene="purC" /locus_tag="STM2487" /note="putative -10_signal for purC; RegulonDB:STMLTH004548" regulatory complement(2602974..2602982) /regulatory_class="minus_35_signal" /gene="purC" /locus_tag="STM2487" /note="putative -35_signal for purC; RegulonDB:STMLTH004548" gene complement(2602991..2604037) /gene="nlpB" /locus_tag="STM2488" /db_xref="GeneID:1254010" CDS complement(2602991..2604025) /gene="nlpB" /locus_tag="STM2488" /note="similar to E. coli lipoprotein-34 (AAC75530.1); Blastp hit to AAC75530.1 (345 aa), 92% identity in aa 2 - 345" /codon_start=1 /transl_table=11 /product="outer membrane protein assembly factor BamC" /protein_id="NP_461423.1" /db_xref="GI:16765808" /db_xref="GeneID:1254010" /translation="MAYSVQKSRLAKVAGVSLVLLLAACSSDSRYKRQVSGDESYLDA APLAELHAPAGMILPITTGDYVIPVTKGSGAVGKALDIRPPAQPLALVSGARTQFSGD TATLLVENGRSSTLWPQVVSVIQAKNYPIEKRDDASQTLTTDWVNWNRLDEDEQYRGR YQISVKPQGYQQAVTVKLVNLEQAGKPVADAASLQRYSTEMMNVISAGLDKTATDAAN AAQNRSAATMDVQSAADDTGLPMLVVRGPFNLVWQRLPAALEKVGMKVTDSTRSQGSM AVTYKPLSDSDWRDLGASDPGLASGDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDAL VAVFQAAFNK" regulatory complement(2604032..2604037) /regulatory_class="ribosome_binding_site" /gene="nlpB" /locus_tag="STM2488" /note="putative RBS for nlpB; RegulonDB:STMS1H002604" gene complement(2604042..2604982) /gene="dapA" /locus_tag="STM2489" /db_xref="GeneID:1254011" CDS complement(2604042..2604920) /gene="dapA" /locus_tag="STM2489" /EC_number="4.3.3.7" /note="similar to E. coli dihydrodipicolinate synthase (AAC75531.1); Blastp hit to AAC75531.1 (292 aa), 91% identity in aa 1 - 292" /codon_start=1 /transl_table=11 /product="4-hydroxy-tetrahydrodipicolinate synthase" /protein_id="NP_461424.1" /db_xref="GI:16765809" /db_xref="GeneID:1254011" /translation="MFTGSIVALVTPMDEKGNVSRSCLKKLIDYHVANGTSAIVSVGT TGESATLSHDEHGDVVMMTLELADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLT VTPYYNRPTQEGLFQHFKAIAEHTDLPQILYNVPSRTGCDMLPETVGRLAEIKNIIAI KEATGNLTRVHQIKELVSDDFILLSGDDASALDFMQLGGHGVISVTANVAAREMADMC KLAAEGQFAEARAINQRLMPLHNKLFVEPNPIPVKWACKALGLVATDTLRLPMTPITD HGRDIVKAALQHAGLL" regulatory complement(2604926..2604931) /regulatory_class="ribosome_binding_site" /gene="dapA" /locus_tag="STM2489" /note="putative RBS for dapA; RegulonDB:STMS1H002605" regulatory complement(2604958..2604966) /regulatory_class="minus_10_signal" /gene="dapA" /locus_tag="STM2489" /note="putative -10_signal for dapA; RegulonDB:STMLTH004549" regulatory complement(2604974..2604982) /regulatory_class="minus_35_signal" /gene="dapA" /locus_tag="STM2489" /note="putative -35_signal for dapA; RegulonDB:STMLTH004549" gene 2605000..2605638 /gene="gcvR" /locus_tag="STM2490" /db_xref="GeneID:1254012" CDS 2605000..2605638 /gene="gcvR" /locus_tag="STM2490" /note="similar to E. coli transcriptional regulation of gcv operon (AAC75532.1); Blastp hit to AAC75532.1 (212 aa), 88% identity in aa 1 - 212" /codon_start=1 /transl_table=11 /product="transcriptional repressor of gcv operon" /protein_id="NP_461425.3" /db_xref="GI:1109557698" /db_xref="GeneID:1254012" /translation="MLYAGFFYGFLKITSPLKGITGLTPSSQHYLVITALGADRPGIV NTITRHVSSCGCNIEDSRLAMLGDEFTFIMLLSGTWNAITLIESTLPLKGAELDLLIV MKRTSDRPRPAMPATVWVQVEVADSPHLIERFTALFNSHEMNIAELVSRTQPAEGDKA AQLFIQITAHSPASQNSANIEQAFKALCTELNAQGSINVVNYSQHDEQDGVK" gene 2605621..2606108 /gene="bcp" /locus_tag="STM2491" /db_xref="GeneID:1254013" regulatory 2605621..2605626 /regulatory_class="ribosome_binding_site" /gene="bcp" /locus_tag="STM2491" /note="putative RBS for bcp; RegulonDB:STMS1H002606" CDS 2605638..2606108 /gene="bcp" /locus_tag="STM2491" /note="similar to E. coli bacterioferritin comigratory protein (AAC75533.1); Blastp hit to AAC75533.1 (156 aa), 98% identity in aa 1 - 156" /codon_start=1 /transl_table=11 /product="thioredoxin-dependent thiol peroxidase" /protein_id="NP_461426.1" /db_xref="GI:16765811" /db_xref="GeneID:1254013" /translation="MNPLKAGDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTP GCTVQACGLRDNMDELKKAGVDVLGISTDKPEKLSRFAEKELLNFTLLSDENHQVCEQ FGVWGEKSFMGKTYDGIHRISFLIDADGKIEHVFNDFKTSNHHDVVLNWLKENA" gene complement(2606155..2606508) /locus_tag="STM2492" /db_xref="GeneID:1254014" CDS complement(2606155..2606508) /locus_tag="STM2492" /note="similar to E. coli orf, hypothetical protein (AAC73616.1); Blastp hit to AAC73616.1 (381 aa), 52% identity in aa 191 - 298" /codon_start=1 /transl_table=11 /product="putative glycerate kinase" /protein_id="NP_461427.1" /db_xref="GI:16765812" /db_xref="GeneID:1254014" /translation="MIPLPPISLKACDVNNPLCGPQGASAIFGPQKGATAEMVNTLDE ALENCGRHIYQATGREVINAPGAAGGMGAALLGLLNAELRAGVEIVVETLQLEQAVKD ADLVMTGEGRLARQA" gene complement(2606695..2607776) /gene="perM" /locus_tag="STM2493" /db_xref="GeneID:1254015" CDS complement(2606695..2607762) /gene="perM" /locus_tag="STM2493" /note="similar to E. coli putative permease (AAC75546.1); Blastp hit to AAC75546.1 (353 aa), 94% identity in aa 1 - 350" /codon_start=1 /transl_table=11 /product="AI-2E family transporter" /protein_id="NP_461428.1" /db_xref="GI:16765813" /db_xref="GeneID:1254015" /translation="MLEMLMQWYRRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLV AIVLAYLLEWPTARLQAIGCSRRWAASIVLILFVGILLLMAFVVMPIAWQQGIYLIRD MPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRTRMLNMGDSVVKYSLASLVGLL TLAVYLVLVPLMVFFLVKDKEQMLNAVRRVLPRNRGLAGQVWNEMNQQITNYIRGKVL EMVVVGVATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGT EFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPL ATLIKAVVHAWPDGQVTDASS" regulatory complement(2607771..2607776) /regulatory_class="ribosome_binding_site" /gene="perM" /locus_tag="STM2493" /note="putative RBS for perM; RegulonDB:STMS1H002607" gene 2607957..2609433 /locus_tag="STM2494" /db_xref="GeneID:1254016" regulatory 2607957..2607962 /regulatory_class="ribosome_binding_site" /locus_tag="STM2494" /note="putative RBS for STM2494; RegulonDB:STMS1H002608" CDS 2607970..2609433 /locus_tag="STM2494" /note="similar to E. coli orf, hypothetical protein (AAC75547.1); Blastp hit to AAC75547.1 (487 aa), 92% identity in aa 1 - 487" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461429.1" /db_xref="GI:16765814" /db_xref="GeneID:1254016" /translation="MFRQLKKNLVATLIAALALGQVAPAFADPADTLPDMGTSAGSTL SIGQEMQMGDFYVRQLRGSAPLINDPLLVQYINALGMRLVSHADSVKTPFHFFLINND EINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQRHLARAMEDQKRSAPLT WVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRAGFD PQAMPSFLEKLLDQARYSTRPPEILLTHPLPESRLADARNRANQMRPVVVQSSADFYF AKARALGMYNSGRNQLTSDLLDQWSKGNVRQQHAAQYGRALQAMEASKYDEARKTLQP LLSAEPNNAWYLDLATDIDLGQKRANDAINRLKNARDLRVNPVLQLNLANAYLQGGQP KAAETILNRYTFSHKDDGNGWDLLAQAEAALNNRDQELAARAESYALAGRLDQAISLL SSASAQAKLGSQQQARYDARIDQLRQLQERFKPYTKM" gene 2609462..2609832 /gene="yfgD" /locus_tag="STM2495" /db_xref="GeneID:1254017" regulatory 2609462..2609467 /regulatory_class="ribosome_binding_site" /gene="yfgD" /locus_tag="STM2495" /note="putative RBS for yfgD; RegulonDB:STMS1H002609" CDS 2609473..2609832 /gene="yfgD" /locus_tag="STM2495" /note="similar to E. coli putative oxidoreductase (AAC75548.1); Blastp hit to AAC75548.1 (119 aa), 83% identity in aa 1 - 119" /codon_start=1 /transl_table=11 /product="putative arsenate reductase" /protein_id="NP_461430.1" /db_xref="GI:16765815" /db_xref="GeneID:1254017" /translation="MTDTIKIYHNPRCSKSRDTLNLLKSNGVEPEVVLYLDTPADAAT VRELLRMLGMSSARELMRQKEDLYKTLHLADSELSEEALIQALVEHPKLMERPIVVAN GQARIGRPPEQVLDILG" gene complement(2609859..2610584) /gene="yfgE" /locus_tag="STM2496" /db_xref="GeneID:1254018" CDS complement(2609859..2610584) /gene="yfgE" /locus_tag="STM2496" /note="similar to E. coli putative DNA replication factor (AAC75549.1); Blastp hit to AAC75549.1 (248 aa), 98% identity in aa 12 - 248" /codon_start=1 /transl_table=11 /product="DnaA regulatory inactivator Hda" /protein_id="NP_461431.1" /db_xref="GI:16765816" /db_xref="GeneID:1254018" /translation="MSSWVEVSLNTPAQLSLPLYLPDDETFASFWPGDNASLLAALQN VLRQEHSGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGME HLSLVCIDNIECVAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLAS RLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQ LDHASITAQRKLTIPFVKEILKL" gene complement(2610655..2611956) /gene="uraA" /locus_tag="STM2497" /db_xref="GeneID:1254019" CDS complement(2610655..2611944) /gene="uraA" /locus_tag="STM2497" /note="similar to E. coli uracil transport (AAC75550.1); Blastp hit to AAC75550.1 (429 aa), 94% identity in aa 1 - 425" /codon_start=1 /transl_table=11 /product="uracil permease" /protein_id="NP_461432.1" /db_xref="GI:16765817" /db_xref="GeneID:1254019" /translation="MTRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPA TVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFC LVSFIVKKAGTGWLDVMFPPAAMGAIVAVIGLELAGVAAGMAGLLPAQGQSPDTKTII ISMVTLAVTVFGSVLFRGFLAIIPILIGVLAGYALSFALGVVDTTPIAQAHWFALPTF YTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLVRDPGLHRSMFANGLSTII SGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQIIPLPVM GGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVHIGAAELKGM ALATIVGICLSLIFKLISLLRPEEVVLEANDAEPPHQ" regulatory complement(2611951..2611956) /regulatory_class="ribosome_binding_site" /gene="uraA" /locus_tag="STM2497" /note="putative RBS for uraA; RegulonDB:STMS1H002610" gene complement(2612032..2612819) /gene="upp" /locus_tag="STM2498" /db_xref="GeneID:1254020" CDS complement(2612032..2612658) /gene="upp" /locus_tag="STM2498" /EC_number="2.4.2.9" /note="similar to E. coli uracil phosphoribosyltransferase (AAC75551.1); Blastp hit to AAC75551.1 (217 aa), 99% identity in aa 10 - 217" /codon_start=1 /transl_table=11 /product="uracil phosphoribosyltransferase" /protein_id="NP_461433.1" /db_xref="GI:16765818" /db_xref="GeneID:1254020" /translation="MKIVEVKHPLVKHKLGLMRENDISTKRFRELASEVGSLLTYEAT ADLETEKVTIEGWNGPVEIDQIKGKKITVVPILRAGLGMMEGVLENVPSARISVVGMY RNEETLEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLV AAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK" regulatory complement(2612670..2612675) /regulatory_class="ribosome_binding_site" /gene="upp" /locus_tag="STM2498" /note="putative RBS for upp; RegulonDB:STMS1H002611" regulatory complement(2612795..2612803) /regulatory_class="minus_10_signal" /gene="upp" /locus_tag="STM2498" /note="putative -10_signal for upp; RegulonDB:STMLTH004550" regulatory complement(2612811..2612819) /regulatory_class="minus_35_signal" /gene="upp" /locus_tag="STM2498" /note="putative -35_signal for upp; RegulonDB:STMLTH004550" protein_bind 2612995..2613011 /note="putative binding site for PurR, RegulonDB: STMS1H000353" /bound_moiety="PurR" gene 2613008..2614109 /gene="purM" /locus_tag="STM2499" /db_xref="GeneID:1254021" regulatory 2613008..2613016 /regulatory_class="minus_35_signal" /gene="purM" /locus_tag="STM2499" /note="putative -35_signal for purM; RegulonDB:STMLTH004551" regulatory 2613032..2613040 /regulatory_class="minus_10_signal" /gene="purM" /locus_tag="STM2499" /note="putative -10_signal for purM; RegulonDB:STMLTH004551" regulatory 2613066..2613071 /regulatory_class="ribosome_binding_site" /gene="purM" /locus_tag="STM2499" /note="putative RBS for purM; RegulonDB:STMS1H002612" CDS 2613072..2614109 /gene="purM" /locus_tag="STM2499" /EC_number="6.3.3.1" /note="AIR synthetase; similar to E. coli phosphoribosylaminoimidazole synthetase = AIR synthetase (AAC75552.1); Blastp hit to AAC75552.1 (345 aa), 91% identity in aa 1 - 345" /codon_start=1 /transl_table=11 /product="phosphoribosylformylglycinamidine cyclo-ligase" /protein_id="NP_461434.3" /db_xref="GI:308065941" /db_xref="GeneID:1254021" /translation="MTDKTSLSYKDAGVDIDAGNALVDRIKGVVKKTRRPEVMGGLGG FGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDAIGIDLVAMCVNDLVVQGAEP LFFLDYYATGKLDVDTAASVINGIAEGCLQSGCALVGGETAEMPGMYHGEDYDVAGFC VGVVEKSEIIDGSRVAEGDVLIALGSSGPHSNGYSLVRKIIDVSGCDPQTTLLEGKPL ADHLLEPTRIYVKSVLELIENVDVHAIAHLTGGGFWENIPRVLPENTQAVINESSWQW PAIFTWLQTAGNVSRHEMYRTFNCGVGMVIALSAPEADKALALLNEKGENAWKIGIIK ASDSEQRVVIE" gene 2614095..2614747 /gene="purN" /locus_tag="STM2500" /db_xref="GeneID:1254022" regulatory 2614095..2614100 /regulatory_class="ribosome_binding_site" /gene="purN" /locus_tag="STM2500" /note="putative RBS for purN; RegulonDB:STMS1H002613" CDS 2614109..2614747 /gene="purN" /locus_tag="STM2500" /EC_number="2.1.2.2" /note="component of RNA degradosome; similar to E. coli phosphoribosylglycinamide formyltransferase 1 (AAC75553.1); Blastp hit to AAC75553.1 (212 aa), 87% identity in aa 1 - 212" /codon_start=1 /transl_table=11 /product="phosphoribosylglycinamide formyltransferase" /protein_id="NP_461435.1" /db_xref="GI:16765820" /db_xref="GeneID:1254022" /translation="MNIVVLISGNGSNLQAIIDACEAKKIKGTLRAVFSNKADAFGLE RAREAGIPAQALTADRFDSRDAFDRELIRKIDAYAPDVVVLAGFMRILSPMFVAHYYG RLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAND SEDDITARVQTQEHAIYPLVISWFAQGRLKMRDNAAWLDGRRLPPQGYASDE" gene 2614919..2617002 /gene="ppk" /locus_tag="STM2501" /db_xref="GeneID:1254023" regulatory 2614919..2614924 /regulatory_class="ribosome_binding_site" /gene="ppk" /locus_tag="STM2501" /note="putative RBS for ppk; RegulonDB:STMS1H002614" CDS 2614936..2617002 /gene="ppk" /locus_tag="STM2501" /EC_number="2.7.4.1" /note="component of RNA degradosome; similar to E. coli polyphosphate kinase (AAC75554.1); Blastp hit to AAC75554.1 (688 aa), 96% identity in aa 1 - 688" /codon_start=1 /transl_table=11 /product="RNA degradosome polyphosphate kinase" /protein_id="NP_461436.1" /db_xref="GI:16765821" /db_xref="GeneID:1254023" /translation="MGQEKLYIEKELSWLAFNERVLQEAADKSNPLIERMRFLGIYSN NLDEFYKVRFAELKRRIIISEEQGSNSHSRHLLGKIQSRVLKADQEFDGLYNELLLEM ARNQIFLINERQLSVNQQSWLRHYFKHYLRQHITPILINRETDLVQFLKDDYTYLAVE IIRGDTINYALLEIPSDKVPRFVNLPPETPRRRKPMILLDNILRYCLDDIFKGFFDYD ALNAYSMKMTRDAEYDLVHEMESSLMELMSSSLKQRLTAEPVRFVYQRDMPAALVDVL REKLTISRYDSIVPGGRYHNFKDFINFPNVGKANLVNKPLPRLRHLWFDKEKFRNGFD AIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHN GKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFLISRKEGDDVV RYAHIGTGNFNEKTARLYTDYSLLTADARITNEVRRVFNFIENPYRPVTFDYLMVSPQ NSRRLLYEMIDREIANAQQGLPSGITLKLNNLVDKGLVDRLYAASGSGVQVNLLVRGM CSLIPQLEGISDNIRAISIVDRYLEHDRVYIFENGGDKQVWLSSADWMTRNIDYRIEV ATPILDPRLKQRVLDIIDILFSDTVKARFIDKELSNRYVPRGNRRKVQAQLAIYDYIK SLEQPD" gene 2617007..2618548 /gene="ppx" /locus_tag="STM2502" /db_xref="GeneID:1254024" CDS 2617007..2618548 /gene="ppx" /locus_tag="STM2502" /EC_number="3.6.1.11" /note="similar to E. coli exopolyphosphatase (AAC75555.1); Blastp hit to AAC75555.1 (513 aa), 92% identity in aa 1 - 513" /codon_start=1 /transl_table=11 /product="exopolyphosphatase" /protein_id="NP_461437.1" /db_xref="GI:16765822" /db_xref="GeneID:1254024" /translation="MPIYDKSPRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQR VHLADGLGADNKLSEEAMERGLSCLSLFAERLQGFSPSSVCIVGTHTLRQAQNAADFL KRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPR LVESRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLETLTWQYRIQGWNVAMGASG TIKAAHEVLLALGEKDGFITPERLDKLKSEVLKHRSFNALSLPGLSEERKAVFVPGLA ILCGVFDALAIRELRLSDGALREGVLYEMEGRFRHQDVRSRTAKSLANQYNIDREQAR RVLETTMQMYEQWQAQQPKLAHPQLEALLRWAAMLHEVGLNINHSGLHRHSAYILQHS DLPGFNQEQQMMMATLVRYHRKAIKLDDMPRFTLFKKKQYLPLIQLLRLGVLLNNQRQ ATTTPPTLRLTTDDSHWTLCFPHDWFSQNALVLLDLEKEQQYWEAVTGWRLNIEEESS PEIAA" gene complement(2618584..2620797) /locus_tag="STM2503" /db_xref="GeneID:1254025" CDS complement(2618584..2620797) /locus_tag="STM2503" /note="similar to E. coli putative cytochrome C-type biogenesis protein (AAC75556.1); Blastp hit to AAC75556.1 (747 aa), 73% identity in aa 1 - 733" /codon_start=1 /transl_table=11 /product="sensor domain-containing phosphodiesterase" /protein_id="NP_461438.1" /db_xref="GI:16765823" /db_xref="GeneID:1254025" /translation="MKLNKTYINIRDKWWGLPLILPSILLPVLSSANTYALTSTGNVV LFYLPLAFMLSLMLFFGWAALPGIVLAIFWRRYPQTGLYETLSVTMHFIITIVLSWGG YRVFSPRRNNVSHGDAHLLFQRIFWQVFCSATLFLVIYQFAAFVGMYESKASLMGVMP FNINTLINYQALLVGNLVGVPLCYFIIRTLRNPLHLRGYYQQLKLQIDSKATKKEIVI WLAVLTTLMFILCMPLTDNSSIFSTNYTLSLLLPVMLWGAMRYGYKFISIIWAVVLIT SIHYYQRYMPWYSGYDTQLAITSSSYLVFSFIVNYMSVLATRQRVVSGRARRLAYLDP VVHLPNLRALNRALQNAPWSTICFLHVPGLELLGKNYGVMLRIQYKQKLSHWITPMLA SNECVYQMSGHDLVLRLNTEAHQQRIEALDKHIKQFRFIWDGLPLQPPVGVSYCCVRS PVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAMHLQRDLKGRIAMMNRLQQALEHDH FFLMAQPIFGVRGDVYHEILLRLRDDNGDVINPDNFLPVAHEFGLSSAIDLWVIENTL RFMAASREYMPAHRFAINLSPTSVCRARFPAEVKQLLTQYQVEPWQLVFEVTESNSLT NAEQAQLTLGQLQQFGCQIAIDDFGTGYASYARLKNVDADILKIDGSFIRNIVSNSLD YQIVASICHLARMKNMQVVAEYVESEEIRSVVLSLGIDYLQGYLIGEPQLLSEIQ" gene complement(2620894..2621031) /locus_tag="STM2504" /db_xref="GeneID:1254026" CDS complement(2620894..2621031) /locus_tag="STM2504" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_448898.1" /db_xref="GI:1109557699" /db_xref="GeneID:1254026" /translation="MEDNFSIYINNKLMITKNKKANKGCRRKVIIDLNQMLLLFNNYN R" gene complement(2621102..2621367) /locus_tag="STM2505" /db_xref="GeneID:1254027" CDS complement(2621102..2621362) /locus_tag="STM2505" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461440.1" /db_xref="GI:16765825" /db_xref="GeneID:1254027" /translation="MRFFFILMVLPGADRRVDETSKEEEKTDKQYDTGHASVKSMSFS HTVGLTHKGFLNVGPAIWAGSGWVLQGYYQGEERNKPAFTLH" gene 2621198..2621401 /locus_tag="STM2506" /db_xref="GeneID:1254028" regulatory 2621198..2621203 /regulatory_class="ribosome_binding_site" /locus_tag="STM2506" /note="putative RBS for STM2506; RegulonDB:STMS1H002616" CDS 2621210..2621401 /locus_tag="STM2506" /note="similar to E. coli orf, hypothetical protein (AAC75557.1); Blastp hit to AAC75557.1 (63 aa), 82% identity in aa 1 - 63" /codon_start=1 /transl_table=11 /product="DUF2633 domain-containing protein" /protein_id="NP_461441.1" /db_xref="GI:16765826" /db_xref="GeneID:1254028" /translation="MSQANSMRKRHRFNTRMTRIVLLISFLFFFGRFVYSSIGAWQHH QDKKEAQQSSLSVTTPGQR" regulatory complement(2621362..2621367) /regulatory_class="ribosome_binding_site" /locus_tag="STM2505" /note="putative RBS for STM2505; RegulonDB:STMS1H002615" gene complement(2621480..2621716) /locus_tag="STM2507" /db_xref="GeneID:1254029" CDS complement(2621480..2621716) /locus_tag="STM2507" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_448901.1" /db_xref="GI:1109557700" /db_xref="GeneID:1254029" /translation="MYLEAINVTGVVPRGLPLVGRTGCPELLKIGCASYREFNHAEGY RVLYSVEGILVTAHVILSPRQDIPRLLFKRLIMA" gene 2621942..2622271 /locus_tag="STM2508" /db_xref="GeneID:1254030" CDS 2621942..2622271 /locus_tag="STM2508" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461443.1" /db_xref="GI:16765828" /db_xref="GeneID:1254030" /translation="MDVLLMRDIEKEIIDFIDQEYNTKKYFLCGPKRIITLDTSIRDD LKLVFEDSEELLQKYFKRWNVDSEGFDILNYLNPEYFGSKEPDPRKPLTVGMLVESAK AGRWLYS" gene complement(2622291..2622652) /locus_tag="STM2509" /db_xref="GeneID:1254031" CDS complement(2622291..2622647) /locus_tag="STM2509" /note="similar to E. coli IS3 putative transposase (AAC75150.1); Blastp hit to AAC75150.1 (288 aa), 54% identity in aa 146 - 242" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461444.1" /db_xref="GI:16765829" /db_xref="GeneID:1254031" /translation="MYLAVVVDLFSCKVIGWSMQPRMTKDIVLNALLMAVWRRHPQKQ VLVQSDQGSQYTRYEWLKLHGLEGSMSRCGNCHDNAVAESFFQLLKRERIKKKIYQRL RSVQVIRGDSAQIRGI" regulatory complement(2622647..2622652) /regulatory_class="ribosome_binding_site" /locus_tag="STM2509" /note="putative RBS for STM2509; RegulonDB:STMS1H002617" gene complement(2622804..2624396) /gene="guaA" /locus_tag="STM2510" /db_xref="GeneID:1254032" CDS complement(2622804..2624381) /gene="guaA" /locus_tag="STM2510" /EC_number="6.3.5.2" /note="similar to E. coli GMP synthetase (glutamine-hydrolyzing) (AAC75560.1); Blastp hit to AAC75560.1 (525 aa), 98% identity in aa 1 - 525" /codon_start=1 /transl_table=11 /product="glutamine-hydrolyzing GMP synthase" /protein_id="NP_461445.1" /db_xref="GI:16765830" /db_xref="GeneID:1254032" /translation="MTENIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEA QIRDFNPSGIILSGGPESTTEENSPRALQYVFEAGVPVFGVCYGMQTMAMQLGGHVEG SNEREFGYAQVEVLTDSALVRGIEDSLTADGKPLLDVWMSHGDKVTAIPSDFVTVAST ESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDAV ARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVMDM FGDHFGLNIVHVPAEERFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQ GTIYPDVIESAASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLELG LPYDMLYRHPFPGPGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYDKVSQAFTV FLPVRSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGIS RVVYDISGKPPATIEWE" regulatory complement(2624391..2624396) /regulatory_class="ribosome_binding_site" /gene="guaA" /locus_tag="STM2510" /note="putative RBS for guaA; RegulonDB:STMS1H002618" gene complement(2624451..2626003) /gene="guaB" /locus_tag="STM2511" /db_xref="GeneID:1254033" CDS complement(2624451..2625917) /gene="guaB" /locus_tag="STM2511" /EC_number="1.1.1.205" /note="similar to E. coli IMP dehydrogenase (AAC75561.1); Blastp hit to AAC75561.1 (488 aa), 98% identity in aa 1 - 488" /codon_start=1 /transl_table=11 /product="IMP dehydrogenase" /protein_id="NP_461446.1" /db_xref="GI:16765831" /db_xref="GeneID:1254033" /translation="MLRIAKEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPM LSAAMDTVTEARLAIALAQEGGIGFIHKNMSIERQAEEVRRVKKHESGVVTDPQTVLP TTTLHEVKALTERNGFAGYPVVTEDNELVGIITGRDVRFVTDLNQPVSVYMTPKERLV TVREGEAREVVLAKMHEKRVEKALVVDDNFHLLGMITVKDFQKAERKPNSCKDEQGRL RVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGG NVATGAGARALAEAGCSAVKVGIGPGSICTTRIVTGVGVPQITAVSDAVEALEGTGIP VIADGGIRFSGDIAKAIAAGASAVMVGSMLAGTEESPGEIELYQGRSYKSYRGMGSLG AMSKGSSDRYFQSDNAADKLVPEGIEGRVAYKGRLKEIIHQQMGGLRSCMGLTGCATI DELRTKAEFVRISGAGIQESHVHDVTITKESPNYRLGS" regulatory complement(2625929..2625934) /regulatory_class="ribosome_binding_site" /gene="guaB" /locus_tag="STM2511" /note="putative RBS for guaB; RegulonDB:STMS1H002619" regulatory complement(2625976..2625984) /regulatory_class="minus_10_signal" /gene="guaB" /locus_tag="STM2511" /note="putative -10_signal for guaB; RegulonDB:STMLTH004552" regulatory complement(2625995..2626003) /regulatory_class="minus_35_signal" /gene="guaB" /locus_tag="STM2511" /note="putative -35_signal for guaB; RegulonDB:STMLTH004552" gene 2626078..2627427 /gene="xseA" /locus_tag="STM2512" /db_xref="GeneID:1254034" CDS 2626078..2627427 /gene="xseA" /locus_tag="STM2512" /EC_number="3.1.11.6" /note="similar to E. coli exonuclease VII, large subunit (AAC75562.1); Blastp hit to AAC75562.1 (456 aa), 87% identity in aa 1 - 447" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease VII large subunit" /protein_id="NP_461447.1" /db_xref="GI:16765832" /db_xref="GeneID:1254034" /translation="MLSSQTSSIFTVSRLNQTVRLLLEQEMGQVWISGEISNFTQPAS GHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIAESM QPAGEGLLQQKYEQLKAKLQAEGLFDQQHKQPLPSPAHCVGVITSKTGAALHDILHVL KRRDPSLPVIIYPTAVQGDDAPGQIVRAIELANARGECDVLIVGRGGGSLEDLWSFND ERVARAIFASRIPVVSAVGHETDVTIADFVADLRAPTPSAAAEIVSRNQQELLRQIQS AQQRLGMAMDYYLANRSRRFTQIFHRLQQQHPQLRLARQQTALERLRQRMGFALEARI KQANQRQQCVSQRLSQQNPQPRIHRAQSRIQQLEYRLTENIRSRLSEQRERFGNAVTH LEAVSPLATLARGYTVSTTTDGKVLKKIKQVKAGDIMTTRLEDGWLESEVKSVTPGT" protein_bind complement(2626174..2626181) /note="putative binding site for PurR, RegulonDB: STMS1H000354" /bound_moiety="PurR" gene complement(2627589..2633715) /gene="shdA" /locus_tag="STM2513" /db_xref="GeneID:1254035" CDS complement(2627589..2633708) /gene="shdA" /locus_tag="STM2513" /note="IcsA; subspecies I specific; Peyer's patch colonization and shedding factor; ShdA (gi|5107805)" /codon_start=1 /transl_table=11 /product="C-terminal region of AIDA-like protein" /protein_id="NP_461448.1" /db_xref="GI:16765833" /db_xref="GeneID:1254035" /translation="MRNMYVVASELARGHSKVKAQVCASETHSPNQKSEYGQIIKATR AALACAVAAALGFFSPLAMADNQVSYADAQPHVLDASTPPISYSGTDEGAALYVSGVA TVGWQPTTVTGTGLVIETSGGGADDPDGGKYVSNAISLDHYAILELTDAKITTTGIYT QGISAADGSTLRLTDSTLTIDGNFGVMTLYTGSEATLDGTIVEAANSSSAQVQQGSTL NVLDGSTITLAQGQINVVAGNTATDEGSTLNLSDSSVSSAGTMSTIQGTNKAALNLTN ATITHTNASGAAVQANNATTLDITGGNITSAGTGVYILASDARIDGATINADGDGIFI TSKRKLDGYEDLNALTVSDANVTSKTVALNIDGSTTINDPIELTNSTFTAPTAIKLGS KATIQAEKTMLTGNIVQTDASSSSLSLSQGSTLTGSVDAMFTTLSLDDTSQWNMTDPS TVGNLTNDGDITLGNASGSTGTLLTVDNTLTLQDGSQINATLDTANSAPIIKAANVTL DGTLNLSSTATFVAPETDEHFGSITLIDSQTAITTDFDSVTLDADTSAMPDYLTINAG VDANDNTNYELSTGLSWYAGANSARAAHGTFTVDAGSTFTVTSELDETTATSNWNGSK LTKQGDGTLILSNTGNDYGDTEIDGGILAAKDAAALGTGDVTIAESATLALSQGTLDN NVTGEGQIVKSGSDELIVTGDNNYSGGTTISGGTLTADHADSLGSGDIDNSGVLKVGE GELENILSGSGSLVKTGTGELTLSGDNTYSGGTTITGGTLTADHADSLGSGDIDNSGV LKVGEGDLENTLSGSGSLVKTGTGELTLSGGNDYSGGTTIIGGTLTADHADSLGTGAV ANSGVLQVGEGELENTLSGSGSLVKTGTGELTLSGDNSYSGGTTIIGGTLTADHADSL GTGAVANSGVLQVGEGELENTLSGSGSLVKTGTGELTLSGDNSYSGGTTIIGGTLTAD HADSLGTGAVANSGVLQVGEGELENTLSGSGSLVKTGTGELTLGGDNSYSGATTITDG TLIAANVNALGSGNIDNSGTLILDANGAFELANVTTHSGATTALAAGSTLDAGQFTQE DGSTLSIDLGAATDDAVITADSVALGGTLNVTGIGSVTDSWTPEAYTYTLIGSDSAIT TDFDDLTVAGMNREDVDFLTIDGKVDEADNTHYDLTASLSWYADRDNATTDAHGTFTL SDPDGSFNVAATLTDVDDTLDPGSRWDGKSLTKEGAGTLILSGDNDYSGGTTINEGTL VAASTTALGTGLVDNNATLVLDADGEVSAVGGITTHSGATTQLALGTSLDLGDSALIQ QDGSTLNVELNSDSVQPLITGSSATLGGDLVVSDASLQARASDAEFQSFKLMDMTSDI SGDFTSLTMNLTDKPDYLTVTGTINPEDASEYLLTEGLSWNATATSATPAHGTFTLGA GDSFEVTSVLGDKTGNGDWDGKSLTKLGAGKLTLSGANTYSGDTNVQEGTLWLSGDGS IGEMGSQQAVNVASGATFGGSNGTTVNGKVTNEGTLVFGNSEETGAIFTLNGDLINMG TMTSGSSSSTPGNTLYVDGNYTGNGGSLYLNTVLGDDDSATDKLVITGDASGTTDLYI NGIGDGAQTTNGIEVVDVGGVSTSDAFELKNEVNAGLYTYRLYWNESDNDWYLASKAQ SDDDDSGGDDTPSDGGDDGGNVTPPDDGGDGGNVTPPDDGGDGGDVTPPDHGGDVAPQ YRADIGAYMGNQWMARNLQMQTLYDREGSQYRNADGSVWARFKAGKAESEAVSGNIDM DSNYSQFQLGGDILAWGNGQQSVTVGVMASYINADTDSTGNRGADGSQFTSSGNVDGY NLGVYATWFADAQTHSGAYVDSWYQYGFYNNSVESGDAGSESYDSTANAVSLETGYRY DIALSNGNTVSLTPQAQVVWQNYSADSVKDNYGTRIDGQDGDSWTTRLGLRVDGKLYK GSRTVIQPFAEANWLHTSDDVSVSFDDATVKQDLPANRAELKVGLQADIDKQWSVRAQ VAGQTGSNDFGDLNGSLNLRYNW" regulatory complement(2633710..2633715) /regulatory_class="ribosome_binding_site" /gene="shdA" /locus_tag="STM2513" /note="putative RBS for shdA; RegulonDB:STMS1H002620" gene complement(2634402..2641716) /gene="ratB" /locus_tag="STM2514" /db_xref="GeneID:1254036" CDS complement(2634402..2641709) /gene="ratB" /locus_tag="STM2514" /note="RatB (gi|5107806)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461449.1" /db_xref="GI:16765834" /db_xref="GeneID:1254036" /translation="MKSKKCVGFLPWLLLCALSLTPFFAQAVRSSGAWQELTEQTAAI NGTPPQADSVTIPVYQGSVQLRSDAANPVDYSAKPSQFSTSDVGSALTLTNPHDTEGD IFAVPPLAWQAERAPAVTLVWADAATPDTPLDPQPVSNISFCAQNLAGRHLVVWSQLD TSTAIPPLWLLTRTGVPYNTAVEVLDQKFAVDIAPAVGDPVTLAADHLDESLNAAKVK AGESIMLTVTTKDCGGEPEGNVDFVITRGDAQNRQGVVNNAAPVRVGNTELTTTATEY HGTTNAEGVATVVVTQANGPGVKTPLIAHPSSAPALKASVDVIFTTLTSPDSSSANMY GHMAETSTATVDGASYTFYRPKLAAETDSEDRTASINNETWAQFNWGHADAHCDILPD ARQLEGLKIARGDLATTLGWPVGLTSGDEEYWSSSQGSTATDHISIDMRSRALTQMPD ATQSLVSCVDKAPPAVTPKLVISADNFDSTVNAAKVKVGEEINMKITVTDSATNKPLP YRYFNVYLGDEQNRQNQKNADIDSGHQWTDDPVIITNLEGSDGHYHGVTDANGQFSLV LTQDKGAGVLTPVRVVLFDGTEATQNVIFTVVTSPDVAQARMWGHMQGVVEAGNIYKR PLLADEAAQDTGSEFENNEYWATFNSVTAATNQCGTGQVPGQLLLDTLYQAHSGNAME TTYGWPTQKHSYIAADTDGSTTAHVNLATGADSTFSGTEPNYLSCSGNELVTSLDVYF NGDESLRNAVAKVGEQITMNVHSVNALNGLSVPNASFTVTMSHGKNRDNATTGFTDPS DGTLVMGGTPFGSSQASMTYQGMTDAEGNATLVIEQPQGVGLLTPLSVLPVNSLITTP VNRSVKFTVATSPDTPEAQMWGHMADTLTVGDMKFQRPKLAAEATAATRTQEQDNETW ARVSHADALNNPNAGGCEAGHLPRADQLAALYASSDGNKIHTVSGWPTEYDYWSSTFA SAATWQAVSLAAGGYTASGDASDYVSCLVSKNPTAASITIEPVDAALWYNANSEHAVK VKKGDTLQLKVTVKDASGNPLPQAPFVLSRGDGYTRQGEKHIAGSGDGIVSAVVIDGD SLNDTATKIGGMTGENGSKIINVTRPDTHGTKVAITAALYDNASATASIDTIFTVVTS PDSDKAKMWGHMPETTTAANGEVFKRPLLSAEIASGVTHGDNTENNEAWGIVDFEMAN DACGAGYVPTLADMQSLYDARPGGAMNTQQGWPLDGKNYQDSTADLSRSTQNRYVKSI NLRDGGVGSLLWNEQLYFVCLQNAHPAATQITLTSPVYNDSDGFAKAKVGETIPVIIT TRDAQGNPAADTPVIFTRGDSVGRANQEVNSSAAADIQINHSDGRSSGANYYTATGAD GTLTLNISQDSGAGFKTPLTAAIEHNGVTSAPLPVIFTVVTSPDTPKANYWGHMAETL TDSSGVAYRRPLLASEFSATPGKTLTIANGYYDKGETWGMITVDKAWNGTGGGCGRDT LPTVANLQTLYGTYPDNAMRSRNGWPMTSSGNNNVSRYWWAGDYVISSDGTKSLYAAV NLFNDGNDVKTTTSTSMYYMQTCLASPRSAAASLTLTLAGQDETTGSAKAKKGEQMAA TIDVKDAAGQPMKNVMVKISRGSSYNRANSATSSSSITDDITLRNVMPSGLATYLLDT SAKYLYAQTDAQGQVTFTLAQDSTAGLKTTISAATMDGSNLTDSKDAIFTVVTSPDSD KAKYWGHMPETFTNSKGVEFKRPLLRAELSSTADTSGYTENNETWYTWSRYPNMYQDT ASPCDRLGLPTVNDLQTLYTDYPNGALTTTLGLPVASGKYWGAGNSVPDATHSDSQFQ YVRLSDNNTLTTKANTATAQLCLAKRRDLSIELTSSDMDADKGAPVAKKGESLPLTVT VRDGSGTPQPNTAIRLGRTLSIDRAGVVDGSSGGGMVLTSVAPSTGSMTFNCTVSSCT SYWYGITDEDGKAQLEVTQDDSRGLRTPLQAMLVDDPLTVSDMDVIFTVITSPDSDKA KYWGHMPETVTNSAGVKFRRPLLAAEMTSNSGTYLVNNETWPLVTAANTEKAGATGCD AEYQPLSGDLQTLYSDNPNGAIGTNYGWPVAGNKSWWAADRAPNTGYYQFINLNSGGK GTASSSTATGAQVCLVEPRTSTPASITLTSTAMDSAKNAAVVAKGSAMPLTVTVKDSS GNPVANVGFTLSRGDSKNRAGMVITDGDVAADAGADDLMLKELTPASASQSMTTTGIV FTGTTGSDGTATFTLNQDKSLGLKTPLTVKVTDNTTLHASLDVIFMVLTSPDTDKALF WGNMSDTTSVNGKTLHRPWLQAEMLSGVTPVFTNGVHANNEYWAMAHTVDNTKWDIAK QCGSLSKAPDNNDLLTLYHSISSLGWPTQGYPYLSKSTSSGGMYCGVDENTKSQNCAI KPAGSAGYATCVE" regulatory complement(2641711..2641716) /regulatory_class="ribosome_binding_site" /gene="ratB" /locus_tag="STM2514" /note="putative RBS for ratB; RegulonDB:STMS1H002621" gene complement(2641875..2647476) /gene="ratA" /locus_tag="STM2515" /db_xref="GeneID:1254037" CDS complement(2641875..2647472) /gene="ratA" /locus_tag="STM2515" /note="RatA (gi|4583529)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461450.1" /db_xref="GI:16765835" /db_xref="GeneID:1254037" /translation="MDRNRQVNKVVHFLLTLLIMFAVSIAPAQALLKGGTWQELNSVT GAVNGTAPLADGAIIPLYQGSTLLDPSKTHDIEFSAMPRDFSADATSTSMRAVNSTDT EGDLFSDPPTIAWENRQPPAMGLVWADAATPDTPLSPQPVPNLTFCAQNLAGRQLVAW AQVEDETNVPALWLFTRTGVPNYATIPLLSPKVALNIKPATDTPVTVSGDHVDSAFEA SKVKVGESITLTISTKACDGTPEGNAPFVIRRKDAENRQGVVNNANPVRVGDTELTTT QTEYRGVTDANGNATVVVTQKEGPGVKTPLVVSSVNFPALTAETAVIFTTITSPDSDK ASMYGHMIESATATLNGITYTFTRPKLAAEASGADKSVVDTNETWALFTWSGADNHCD ILPDAEQLVQMRHEHSTLETWTGWPVAGDAEYWSSTKNQLSGYHAAVHMNSASVVRAA DSDTLLVSCVDKAQPAAHPQITLSPQGPYKAQVGESIDLTMTVVDRDTQKPLPYRYME LFIDPAKNRKGEHQDAWDNLRVTVDSEGMSASSPEHYTGVTDVNGQAHLTLKHNSGLG VETPIRIVMPDDEGGNVELSFSVIFTVVTSPDVDGANMWGHMRGVVDAGNLYKRPLLA VEASHKDGQFSENNEEWATFNSVASATAQCGVGQVPDQSSLAHLYSEHAGGQMESEHG WPTEDYFIAADSDASGTVHVNLENGDSGKFTDTPNYLTCSANEMVAVLDVYFNDDPVI KNADAKVGEQVKMNIHSRNALNGMAIGNTDFTITMANGRRRDGLTTGFTDTSNGEMQF DDVGYVAGQVYHGITDANGDATIILTQKKGVGLLTPLNIAPVDSLISTPVSRSVKFTV ATSPDTPAAKMWGHMADTITVGDWTFERPKLAGEVSNPLRTQDESNETWARVAHSDAV GNPDAGGCAANRLPRIDQLEALYNANSGGKIHSIQGWPTYLNYWSSTYQSATTWKLIA LTNGSEFANSNVSIYASCLASDNPVAASITIEPVNPSQWYDGSDVHAVKVKKGETMQL KVTVKDVSGNPIPEAPFVLTRGDGYDRRGEKYTAQDGDDLQGIVTPVVIDGESLAWTT TKMGSQTGTDGTRIISVTRPDTHGTRTAINATLYENAAVSASIDTIFTVVTSPDVSVA RMWGHMAPSLTAADGAVYQRPLLYAELSSTDNTASKQETNETWAVFHGPASEGANPAR CAAGYYPAVEALDSLYSKYPSRTINTAQGWPVYYSYWSGSNSTSFSSGAKLDFYYAVD LADGSRRSENSATSTAWQYQICATTPLPQATQITLTSPQAMDDAIQAVKAKNSESIPL LITTTDAMGNPVPYATFSLKRDAGKARNPDYNKFVATNGTNMTVTPLTGAQQQFYYAT SVLTGATGADGTLALTLAEPGGIGLKNQLTANLNDTPTATSSLPVVFTVLTSPDSDKA NMYGHMPETFTASNGAEFKRPLVAGEPSSEAHTDTYFETNENWIMVNSFNTGNYGGCP MNQMAAIDDFTALYNDHPSGKVATDIGLPVGKRWWAGDSLLKGSTLYWQYKDLKTGKN YSMSENPGNYYLQLCLTTSRSGLNIALSSDAWNADKSAAVAKKGETIPMTVTVTNDAG QPQAGVAVLLTRDYAYSRGAVDKQYIEPGVIGEPVPFTTSPANMMLAPVAPAGTAVAF NNQNGLSTKWSGFTGDDGKLRFTLTQDKSLGLKTSVTAALANQFDEAASVDAIFTVQT SPDTPYASYWGHMPDTVQVNGVTLRRPYLKAELSAAPRDTWPFNNEFWGTNYYYQSEH VETSLTHLCGSQENIASLDDLKALQSVIGTLQWPTTSSWDYVSQDEGQSNKYYCSFNE TTGQTTCTREKATTSGLGSCRVP" regulatory complement(2647471..2647476) /regulatory_class="ribosome_binding_site" /gene="ratA" /locus_tag="STM2515" /note="putative RBS for ratA; RegulonDB:STMS1H002622" gene complement(2647592..2648558) /gene="sinI" /locus_tag="STM2516" /db_xref="GeneID:1254038" CDS complement(2647592..2648551) /gene="sinI" /locus_tag="STM2516" /note="SinI (gi|4583530)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461451.1" /db_xref="GI:16765836" /db_xref="GeneID:1254038" /translation="MQATVKRRLTKVALALVVAGYCAAPAVAANGNLKSGQWQIVSEQ TGTIQGTVPWITRAADKTADTDKDHVTVTIDRGDRKIVTEGDKQFHVGDKVTVNWAIG DTEGDLDTDNTATKATVKWVSFSDQNGSDPKDLGTGDSYEIQAADADRYIGIKITPTT TTGDPAVATELLLKDLSTDAGGGSDDDEIPEGPVVDENVHVVIHEKDSNTNLLKNSGT TLKTNTTYQVLLWSDKNGNGTYDAGENVTDQYDYRWKFVGTSKIAGTGTGGIVNESWN DKDLVIPVTNAEAKTAFEGADGGVTVGSDGVQGFGLSIDYKRK" regulatory complement(2648553..2648558) /regulatory_class="ribosome_binding_site" /gene="sinI" /locus_tag="STM2516" /note="putative RBS for sinI; RegulonDB:STMS1H002623" gene complement(2648609..2650807) /gene="sinH" /locus_tag="STM2517" /db_xref="GeneID:1254039" CDS complement(2648609..2650801) /gene="sinH" /locus_tag="STM2517" /note="similar to Escherichia coli intimin and Yersinia pestis invasin proteins; (gi|4583531)" /codon_start=1 /transl_table=11 /product="intimin-like inverse autotransporter protein SinH" /protein_id="NP_461452.1" /db_xref="GI:16765837" /db_xref="GeneID:1254039" /translation="MVRRIRILVLLLVSGVSVAASGADNSASANDESHSSLPDLASES AKKEEQENKGKSFKEQGADYFINSATQGFDNLTPEALESQARSYLQNQITSSAQSYLE GVMSPYGKIRTSLSVGEGGDLDGSSLDYFIPWYDNQSTLFFSQISAQRKEDRTIGNFG LGVRQNVGNWLLGGNAFYDYDFTRGHRRLGLGTEAWTDYLKFSGNYYHPLSDWKDSED FDFYEERPARGWDIRMESWLPFYPQLGAKLVYEQYYGDEVALFGTDNLQKDPHAVTLG LEYTPVPLVTVGTDYKAGTGDSNDFSVNATVNYQIGTPLAAQLDPENVKIQHSLMGSR TDFVDRNNFIILEYREKDPLDVTLWLKADATNEHPECVIEDTPEAAVGLEKCKWTVNA LINHHYKIISASWQAKNNAARTLVMPVVKANALTEGNNNSWNLVLPAWVNADTEEQRT ALNTWKVRMTLEDEKGNKQNSGVVEITVQQDRKIELIVDNIADTDRSDHSHEASALAD GEDGVVMDLLITDSFGDSTDRNGNELVDDAMTPVLYDSNDKKVTLAQTPCTTETPCVF IASRDKEAGTVTLSSTLPGTFRWKAKADAYGDSNYVDVTFIGDNLSALNAVIYQVKAA NPVNLIGKEDKHPTVNNAYRFLLWRDKNKDGVFQMSEQLTEEEMALYDYQWEFTGQST NGHTGALANTMNEDLVLPVTNKEAAQKFAANVEDGVQGYGIRVTYSQK" regulatory complement(2650802..2650807) /regulatory_class="ribosome_binding_site" /gene="sinH" /locus_tag="STM2517" /note="putative RBS for sinH; RegulonDB:STMS1H002624" gene complement(2651147..2651380) /gene="yfgJ" /locus_tag="STM2518" /db_xref="GeneID:1254040" CDS complement(2651147..2651368) /gene="yfgJ" /locus_tag="STM2518" /note="similar to E. coli orf, hypothetical protein (AAC75563.1); Blastp hit to AAC75563.1 (83 aa), 63% identity in aa 13 - 83" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461453.1" /db_xref="GI:16765838" /db_xref="GeneID:1254040" /translation="MEITCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPLQVL KACGAVDYFCQNGHGLISKKRVNFVISDQ" regulatory complement(2651375..2651380) /regulatory_class="ribosome_binding_site" /gene="yfgJ" /locus_tag="STM2518" /note="putative RBS for yfgJ; RegulonDB:STMS1H002625" gene complement(2651457..2652941) /gene="engA" /locus_tag="STM2519" /db_xref="GeneID:1254041" CDS complement(2651457..2652929) /gene="engA" /locus_tag="STM2519" /note="similar to E. coli putative GTP-binding factor (AAC75564.1); Blastp hit to AAC75564.1 (503 aa), 97% identity in aa 14 - 503" /codon_start=1 /transl_table=11 /product="ribosome biogenesis GTPase Der" /protein_id="NP_461454.1" /db_xref="GI:16765839" /db_xref="GeneID:1254041" /translation="MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGR AEVEGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAI AKHLRSREKPTFLVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLL PWMDDVAPQEEVDEDAEYWAQFEAEQNGEEAPEDDFDPQSLPIKLAIVGRPNVGKSTL TNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVI KTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQV KETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAV EDHQPPLVRGRRVKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLEVMG TPIRIQFKEGENPYANKRNTLTPTQMRKRKRLMKHIKKSK" regulatory complement(2652936..2652941) /regulatory_class="ribosome_binding_site" /gene="engA" /locus_tag="STM2519" /note="putative RBS for engA; RegulonDB:STMS1H002626" gene complement(2653048..2654236) /gene="yfgL" /locus_tag="STM2520" /db_xref="GeneID:1254042" CDS complement(2653048..2654226) /gene="yfgL" /locus_tag="STM2520" /note="similar to E. coli putative dehydrogenase (AAC75565.1); Blastp hit to AAC75565.1 (392 aa), 91% identity in aa 1 - 392" /codon_start=1 /transl_table=11 /product="outer membrane protein assembly factor BamB" /protein_id="NP_461455.1" /db_xref="GI:16765840" /db_xref="GeneID:1254042" /translation="MQLRKLLLPGLLSVTLLSGCSLFSGEEDVVKMSPLPQVENQFTP TTVWSTSVGNGIGEFYSNLHPVMVDNVVYAADRAGVVKALNADDGKEIWSVNLGEKDG WFSRSSALLSGGVTVAGGHVYIGSEKAEVYALNTSDGTTAWQTKVAGEALSRPVVSDG IVLIHTSNGQLQALNQADGAIKWTVNLDMPSLSLRGESAPATAFGAAIVGGDNGRVSA VLMQQGQMIWQQRISQATGPTEIDRLSDVDTTPVVVNGVVYALAYNGNLTALDLRSGQ IMWKRELGSVNDFIVDGDRIYLVDQNDRVLALTTDGGVTLWTQSDLLHRLLTSPVLYN GDLVVGDSEGYLHWINVDDGRFVAQQKVDSSGFLTEPTVADGKLLIQAKDGTVYAITR " regulatory complement(2654231..2654236) /regulatory_class="ribosome_binding_site" /gene="yfgL" /locus_tag="STM2520" /note="putative RBS for yfgL; RegulonDB:STMS1H002627" gene complement(2654237..2654872) /gene="yfgM" /locus_tag="STM2521" /db_xref="GeneID:1254043" CDS complement(2654237..2654857) /gene="yfgM" /locus_tag="STM2521" /note="similar to E. coli orf, hypothetical protein (AAC75566.1); Blastp hit to AAC75566.1 (206 aa), 88% identity in aa 1 - 206" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461456.1" /db_xref="GI:16765841" /db_xref="GeneID:1254043" /translation="MEIYENEHDQVDAIKRFFAENGKALAVGVILGVGALVGWRYWSS HQTESARAASLAYQNAVTAVSADKPDSIPAAEKFAAENKNTYGALASMELAQQFVDKN ELKKAEAQLQQGLAATSDENLKAVINLRLARVQLQLKQADAALKTLDAVKGEGWTAIV ADLRGEALLSKGDKKGARSAWEAGVNSDASPALSEMMQMKINNLSI" regulatory complement(2654867..2654872) /regulatory_class="ribosome_binding_site" /gene="yfgM" /locus_tag="STM2521" /note="putative RBS for yfgM; RegulonDB:STMS1H002628" gene complement(2654871..2656161) /gene="hisS" /locus_tag="STM2522" /db_xref="GeneID:1254044" CDS complement(2654871..2656145) /gene="hisS" /locus_tag="STM2522" /EC_number="6.1.1.21" /note="histidyl-tRNA synthetase. (SW:SYH_SALTY)" /codon_start=1 /transl_table=11 /product="histidine--tRNA ligase" /protein_id="NP_461457.1" /db_xref="GI:16765842" /db_xref="GeneID:1254044" /translation="MAKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLP IVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE QRLWYIGPMFRHERPQKGRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGIAEH VSLELNSIGSLEARANYRDALVAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDVQAL LNDAPALGDYLDDDSREHFAGLCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSL GSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFIASPVVDIYLV AAGAQTQSAAMTLAERLRDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEV ADGTVVVKDLRSGEQTAVAQDSVAAHLRTLLG" regulatory complement(2656156..2656161) /regulatory_class="ribosome_binding_site" /gene="hisS" /locus_tag="STM2522" /note="putative RBS for hisS; RegulonDB:STMS1H002629" gene complement(2656256..2657384) /gene="gcpE" /locus_tag="STM2523" /db_xref="GeneID:1254045" CDS complement(2656256..2657374) /gene="gcpE" /locus_tag="STM2523" /note="involved in density-dependent regulation of peptidoglycan biosynthesis; similar to E. coli orf, hypothetical protein (AAC75568.1); Blastp hit to AAC75568.1 (372 aa), 98% identity in aa 1 - 372" /codon_start=1 /transl_table=11 /product="4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase" /protein_id="NP_461458.1" /db_xref="GI:16765843" /db_xref="GeneID:1254045" /translation="MHNQAPIQRRKSTRIYVGNVPIGDGAPIAVQSMTNTRTTDVEAT VNQIKALERVGADIVRVSVPTMDAAEAFKLIKQQVNVPLVADIHFDYRIALKVAEYGV DCLRINPGNIGNEERIRMVVDCARDKNIPIRIGVNAGSLEKDLQEKYGEPTPQALLES AMRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARSGAV KSAIGLGLLLSEGIGDTLRVSLAADPVEEIKVGFDILKSLRIRARGINFIACPTCSRQ EFDVIGTVNALEQRLEDIITPMDVSIIGCVVNGPGEALVSTLGVTGGNKKSGLYEDGV RKDRLDNDDMIAQLESRIRAKASQLDEARRIDVLQVEK" regulatory complement(2657379..2657384) /regulatory_class="ribosome_binding_site" /gene="gcpE" /locus_tag="STM2523" /note="putative RBS for gcpE; RegulonDB:STMS1H002630" gene complement(2657401..2658405) /gene="yfgA" /locus_tag="STM2524" /db_xref="GeneID:1254046" CDS complement(2657401..2658405) /gene="yfgA" /locus_tag="STM2524" /note="similar to E. coli putative membrane protein (AAC75569.1); Blastp hit to AAC75569.1 (337 aa), 83% identity in aa 1 - 337" /codon_start=1 /transl_table=11 /product="helix-turn-helix domain-containing protein" /protein_id="NP_461459.1" /db_xref="GI:16765844" /db_xref="GeneID:1254046" /translation="MNTEATHDQNEAQTTGVRLRNAREQLGLSQQAVAERLCLKVSTV RDIEEDKAPSDLASTFLRGYIRSYARLVHVPEEELLPGLEKQAPLRAAKVAPMQSFSL GKRRKKRDGWLMSFTWLVLFVVVGLTGAWWWQNHKAQQEEITTMADQSTAELNADKDS GQSVPLDTGAATSQDTTPAQTAPAPATPVDSTAATQTPAPTAAATQNTVVAPSQANVD TAATSAAPAATETPSALPTSQAGVAAPAADPNALVMNFTADCWLEVTDATGKKLFSGM QRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEPTPAQ " gene complement(2658697..2659875) /gene="yfgB" /locus_tag="STM2525" /db_xref="GeneID:1254047" CDS complement(2658697..2659863) /gene="yfgB" /locus_tag="STM2525" /note="similar to E. coli orf, hypothetical protein (AAC75570.1); Blastp hit to AAC75570.1 (384 aa), 95% identity in aa 1 - 384" /codon_start=1 /transl_table=11 /product="bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN" /protein_id="NP_461460.1" /db_xref="GI:16765845" /db_xref="GeneID:1254047" /translation="MSEQIVTPESSTPVVPNKETKINLLDLNRQQMREFFKNLGEKPF RADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIA VGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAA KIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSG VVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQ GRVTIEYVMLDHVNDGTEHAHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRF SKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEVIDIKAI" regulatory complement(2659870..2659875) /regulatory_class="ribosome_binding_site" /gene="yfgB" /locus_tag="STM2525" /note="putative RBS for yfgB; RegulonDB:STMS1H002631" gene complement(2660070..2660510) /gene="ndk" /locus_tag="STM2526" /db_xref="GeneID:1254048" CDS complement(2660070..2660501) /gene="ndk" /locus_tag="STM2526" /EC_number="2.7.4.6" /note="similar to E. coli nucleoside diphosphate kinase (AAC75571.1); Blastp hit to AAC75571.1 (143 aa), 96% identity in aa 1 - 143" /codon_start=1 /transl_table=11 /product="nucleoside-diphosphate kinase" /protein_id="NP_461461.1" /db_xref="GI:16765846" /db_xref="GeneID:1254048" /translation="MAIERTFSIIKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTV EQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGT LRADYADSLTENGTHGSDSLESAQREIAFFFGEGEVCPRTR" regulatory complement(2660505..2660510) /regulatory_class="ribosome_binding_site" /gene="ndk" /locus_tag="STM2526" /note="putative RBS for ndk; RegulonDB:STMS1H002632" gene complement(2660622..2661485) /locus_tag="STM2527" /db_xref="GeneID:1254049" CDS complement(2660622..2661485) /locus_tag="STM2527" /note="similar to E. coli hydrogenase 4 Fe-S subunit (AAC75541.1); Blastp hit to AAC75541.1 (181 aa), 36% identity in aa 33 - 124, 40% identity in aa 42 - 90" /codon_start=1 /transl_table=11 /product="ferredoxin" /protein_id="NP_461462.1" /db_xref="GI:16765847" /db_xref="GeneID:1254049" /translation="MVNLTIDPAVDVTQACVRRRFRFSSCRACADVCPAQAFSLAQGQ VSIDTTRCIACGDCLFVCPVDAITGIKPVKRFVQGDTLVGPFSLQAPTVDELLLWHSQ YGIRFIDIAVERSAQWLMALARLNLALRRYGEPGWSFKHVVGAEINASRRTLFHVPRD AITPCAVEPGKRRLRQAFSAFSECVPEISPQECRMCGACWRSCPENVIQFDDNTLTIA AARCTGCGGCAAVCPHQALRLRFDVEPASTRHSTAYTLTCDICKRTFHALTPEHTHCV LCQSPEFAVRL" gene complement(2661485..2662300) /locus_tag="STM2528" /db_xref="GeneID:1254050" CDS complement(2661485..2662294) /locus_tag="STM2528" /note="similar to E. coli anaerobic dimethyl sulfoxide reductase subunit C (AAC73982.1); Blastp hit to AAC73982.1 (287 aa), 32% identity in aa 6 - 277" /codon_start=1 /transl_table=11 /product="dimethyl sulfoxide reductase" /protein_id="NP_461463.2" /db_xref="GI:1109557701" /db_xref="GeneID:1254050" /translation="MHELPLLIFTLCLQGSVGVTVWLALGRQYAVEGRVPARGALPAM AGAFVLACVGLLASALHMGYPLNALNALRHVASSWLSREIVFASLYLAALGLGIVLLF FRKPGWQPLLALAAAFGLVDVFCMAQVYIHASVATWQHSNTLALFFGTSGIIGSVVIA LAYLRNAGAAMRCAVVVVALMVLIRLIMQPLWLADINAVDTTVVTFPHHPLQALAQLR DVYLLGWCVSAAGMLCFAAGGLRNARGTLVAGSVLLLLGEIMLRYVFFSIG" gene complement(2662287..2662923) /locus_tag="STM2529" /db_xref="GeneID:1254051" CDS complement(2662287..2662916) /locus_tag="STM2529" /note="similar to E. coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); Blastp hit to AAC73981.1 (205 aa), 56% identity in aa 4 - 193" /codon_start=1 /transl_table=11 /product="dimethylsulfoxide reductase subunit B" /protein_id="NP_461464.1" /db_xref="GI:16765849" /db_xref="GeneID:1254051" /translation="MSQFTHYPPVSDKQLGFFIDSSRCSGCKACQVACKDKNNLEVGR RFRRVYEVKGGSFIPTGQGGVSNNVFAYTLSISCNHCADPVCTKNCPTTAMHKRPGDG IVRVDTDKCVGCGYCAWSCPYGAPQLNEQTGQMSKCDMCVDLLAKGEPPVCVATCPLE AIKFGPIDELRAKYGSVCDVNGLPDSSITKPNLVVKAHQGAEKEGKRHA" regulatory complement(2662295..2662300) /regulatory_class="ribosome_binding_site" /locus_tag="STM2529" /note="putative RBS for STM2528; RegulonDB:STMS1H002633" gene complement(2662913..2665318) /locus_tag="STM2530" /db_xref="GeneID:1254052" CDS complement(2662913..2665318) /locus_tag="STM2530" /note="similar to E. coli putative oxidoreductase, major subunit (AAC74660.1); Blastp hit to AAC74660.1 (808 aa), 42% identity in aa 15 - 807" /codon_start=1 /transl_table=11 /product="putative anaerobic dimethylsulfoxide reductase" /protein_id="NP_461465.1" /db_xref="GI:16765850" /db_xref="GeneID:1254052" /translation="MGFYLTSRIMKNIKSQGNGEQPAISRRHFIQASSALIALPFVSS PATAQARAVTATENRPAEKVVQTCSTFDCGGKCDIRAHVSDGIVTRISTRPDNALDAQ MPVMRACVRGRAYRKFVYHPDRLKYPMKRVGKRGEGKFERISWDEATTLIADNLKSIT EKYGPASRYVHVGTAVSGGTFSGDKMARRLLNLTGGYLESYHSVSMGNTAAATPYTYG IAASGSSLDTLLDTKLVILWGHNPTETIFGHTNYFLQKMKQNGTRFIVVDPRYSDTVS SLADQWIPLLPTTDNALMDAMMYVIISENLHDRAFIARYAIGFDEDSMPEGVPANESL VAYLTGAKDGVVKSPEWAEKITHVPAQTIRQLARDYANTKPAALIQGWGPQRHNCGER TARGSTLLATITGNVGIKGGWAAGYGGCANRKFAAGPEMPDNPVKAKISVMNWVQAAD DASKVTPDMGLKDADKLDSNIRILFSLAGNYLANQNPDLHQAVRVLEDESKIQFIVAS DLFMTPSAKYADLLLPETSFMERWNIGETWGTASYLILSEKLIEPEFERRSDYDWLRE VAAKLGIENEFSQGRDEKAWIEHIWEQTRLAMPDENLPDFATLQKTRQHLFKSAPFIA FEDNIRDPENHPFPTPSGKIEIFSKRLYDMQHPEIPALSHYVPAHEGPEDALAKDFPL QLITWKGKNRANSTQYANPWLIEVQQQTLWINPQDAQKRGITHGDMVRIHNSRGICEI PAEVTPRIIPGVVAMQAGAWWQPDENGVDKGGCANVLSSARITALAKGNSHQTMLVEV AKA" regulatory complement(2662918..2662923) /regulatory_class="ribosome_binding_site" /locus_tag="STM2529" /note="putative RBS for STM2529; RegulonDB:STMS1H002634" gene complement(2665447..2667762) /gene="pbpC" /locus_tag="STM2531" /db_xref="GeneID:1254053" CDS complement(2665447..2667762) /gene="pbpC" /locus_tag="STM2531" /note="similar to E. coli putative peptidoglycan enzyme (AAC75572.1); Blastp hit to AAC75572.1 (770 aa), 82% identity in aa 7 - 767" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 1C" /protein_id="NP_461466.1" /db_xref="GI:16765851" /db_xref="GeneID:1254053" /translation="MNGWRGKRGRWLWLAGAPLFIFLALWAADKLWPLPLNEVHPARV VVAHDGTPLWRFADAGGIWRYPVTIEEVSPRYLEALINYEDRWFWRHPGVNPFSVARA AWQDLTAGRVISGGSTLTMQVARLLDPHSRTFGGKIRQLWRALQLEWHLSKRDILTLY LNRAPFGGTLQGIGAASWAYFGKPPARLSYADAALLAVLPQAPSRLRPDRWPARAEAA RNKVLDRMAAQGVWPAETVRESREEPVWLAPRQMPQLAPLFARMMLSKSQNDKIVTTL DAGLQRQLEDLARAWKGRLPARSSLAMIVVDHTDMSVRGWVGSVDLNDDSRFGHVDMV TAIRSPGSVLKPFVYGLALDDGLIHPASLLQDVPRRTGDYRPGNFDSGFHGPVSMSDA LVRSLNLPAVQVLEAYGPKRFAAKLRNVGLPLYLPAGAAPNLSLILGGAGARLDEMAA AYSAFARHGKAAKLRLQPDDPLSERPLMSPGAAWIIRRIMADEAQPLPDNALPRIVPL AWKTGTSYGYRDAWAIGVNARYIIGIWTGRPDGTPVVGQFGFASAVPLLNQVNNLLLA HTGRLPEDPRPQAVSRGVICWPGGQTLPAGDSNCRRRLATWLLDDSQPPTLLLPEQED INGIRFPVWLDDTGRRVAADCPQARAHTFIVWPRPLEPWLPPAERRSARLPAASDHCP PLQGNDAAPLMLSGVRDGAVIRQLPGQENVTLPVSTTGGKGRRWWFLNGEPVNGENNR LSLLLNIAGRYQLVVMDESGQVAAVNFELIR" gene complement(2667763..2672709) /locus_tag="STM2532" /db_xref="GeneID:1254054" CDS complement(2667763..2672697) /locus_tag="STM2532" /note="similar to E. coli orf, hypothetical protein (AAC75573.1); Blastp hit to AAC75573.1 (1653 aa), 81% identity in aa 1 - 1653" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461467.1" /db_xref="GI:16765852" /db_xref="GeneID:1254054" /translation="MKHLRVVACMIMLALAGCDNNDKTAPTTKSEAPAVAQPSPAQDP AQLQKLAQQSQGKALTLLDASEAQLDGAATLVLTFSIPLDPEQDFSRVVHVVDKKSGS VDGAWELAPNLKELRLRHLEPERVLVVTVDPAVKALNNATFGKSYEKTITTRDVQPSV GFASRGSLLPGKIAEGLPVMALNVNHVDVNFFRVKPGSLASFVSQWEYRSSLSNWESD NLLKMADLVYTGRFDLNPARNTREKLLLPLSDIKPLQQAGVYVAVMNQAGHYNYSNAA TLFTLSDIGVSAHRYHNRLDIFTQSLENGAAQSGIEIVLLNDKGQTLAQATSDAQGHV QLEADKAAALLLARKEEQTTLLDLTLPALDLSEFNVAGAPGYSKQFFMFGPRDLYRPG ETVILNGLLRDSDGKTLPDQPVKLEVVKPDGQVMRTVVSQPENGLYRLNYPLDINAPT GLWHVRANTGDNLLRSWDFHVEDFMPERMALNLTAQKTPLAPADEVKFSVVGYYLYGA PANGNTLQGQLFLRPLRDAVAALPGFQFGNIAEENLSRSLDEVQLTLDKGGRGEVSAA SQWQEAHSPLQVILQASLLESGGRPVTRRVEQAIWPADTLPGIRPQFAAKAVYDYRTD TTVNQPIVDEDSNAAFDIVYANAQGEKKAVSGLQVRLIRERRDYYWNWSESEGWQSQF DQKDLVEGEQTLDLNADETGKVSFPVEWGAYRLEVKAPNETVSSVRFWAGYSWQDNSD GSGAARPDRVTLKLDKANYRPGDTMKLHIAAPVAGKGYAMVESSDGPLWWQAIDVPAQ GLELTIPVDKTWNRHDLYLSTLVVRPGDKSRSATPKRAVGLLHLPLGDDNRRLDLALE SPAKMRPNQPLTVRVKASVKHGEMPKQINVLVSAVDSGVLNITDYATPDPWQAFFGQK RYGADIYDIYGQVIEGQGRLAALRFGGDGDDLKRGGKPPVNHVNIIAQQAQPITLNEQ GEGVVTLPIGDFNGELRVMAQAWTADDFGRGESKVVVAAPVIAELNMPRFLAGGDVSR LVLDVTNLTDRPQTLNIALAASGLLELLSQQPQPVNLAPGVRTTLFVPVRALEGFGEG EIQATISGLNLPGETLDAQHKQWQIGVRPAWPAQTVNSGIALAPGESWHVPEQHLANI SPATLQGQLLLSGKPPLNLARYIRELKAYPYGCLEQTTSGLFPALYTNAAQLQSLGIT GDSDEKRRAAVDIGISRILQMQRDNGGFALWDENGAEEPWLTAYAMDFLIRAGEQGYS VPPEAINRGNERLLRYLQDPGTMLIRYSDNTQASTFAAQAYAALVLARQQKAPLGTLR EIWERRSQAASGLPLMQLGIALNTMGDARRGEEAITLALNTPRQDERQWIADYGSSLR DNALMLSLLEENNLRPDAQNALLSSLSEQAFGQRWLSTQENNALFLAAHSRQASAGAW QVQTSLEAQPLSGDKALTRNLDADQLAALEVTNTGSQPLWLRLDSSGYPSSAPEPASN VLQIERQILGTDGQRKSLSSLRSGELVLVWLTVVADRNVPDALVVDLLPAGLELENQN LADSSASLPESGSEVQNLLNQMQQADIQYMEFRDDRFVAAVVVNEGQPVTLVYLARAV TPGTYQLAQPQVESMYAPQWRATGASEGLLIVTP" regulatory complement(2672704..2672709) /regulatory_class="ribosome_binding_site" /locus_tag="STM2532" /note="putative RBS for STM2532; RegulonDB:STMS1H002635" gene 2672894..2673748 /gene="sseA" /locus_tag="STM2533" /db_xref="GeneID:1254055" regulatory 2672894..2672899 /regulatory_class="ribosome_binding_site" /gene="sseA" /locus_tag="STM2533" /note="putative RBS for sseA; RegulonDB:STMS1H002636" CDS 2672906..2673748 /gene="sseA" /locus_tag="STM2533" /EC_number="2.8.1.1" /note="similar to E. coli putative thiosulfate sulfurtransferase (AAC75574.1); Blastp hit to AAC75574.1 (334 aa), 80% identity in aa 54 - 332" /codon_start=1 /transl_table=11 /product="3-mercaptopyruvate sulfurtransferase" /protein_id="NP_461468.1" /db_xref="GI:16765853" /db_xref="GeneID:1254055" /translation="MTTAFFVAADWLAEHIDDPEIQILDARMAPPGQEHRDMAGEYRA GHIPGALFFDIEALSDRASPLPHMMPRPEAFAVAMRELGVRQDKHLVIYDEGNLFSAP RAWWMLRTFGAEKVSILAGGLAGWQRDEWLLREGEEAHEGGEFEAKFAPQAVVRLTDV LLASHEKTAQIVDARPAARFNAQADEPRPGLRRGHIPGALNVPWTELVYEGELKTTDE LNEVFFSHGVSFDRPIIASCGSGVTAAVVVLALATLDVPDVTLYDGAWSEWGARTDLP VEPA" gene 2673989..2674663 /locus_tag="STM2534" /db_xref="GeneID:1254056" regulatory 2673989..2673994 /regulatory_class="ribosome_binding_site" /locus_tag="STM2534" /note="putative RBS for STM2534; RegulonDB:STMS1H002637" CDS 2673995..2674663 /locus_tag="STM2534" /codon_start=1 /transl_table=11 /product="DUF5066 domain-containing protein" /protein_id="NP_461469.1" /db_xref="GI:16765854" /db_xref="GeneID:1254056" /translation="MDISLTNLIELVKKVNRNKVPTPMSAEEISRLRVRKYRDPQNTE TTELPESLKALLAYDRDLLSNYNMPVIETLQKSIDNEGVIHSYSPDEEAYYGVGMDSS GIDIEDLMPVWSNDPRLPALIRIDHVGDQAIFIYITERDANGEYPIARMERNEFWLAE SSLVEYLYNIISGAKDIGFTEEDLHLPQWKAQQKMNEQRDAALLDLEDYHEAFWAKLD ALVD" gene complement(2675232..2676017) /gene="sseB" /locus_tag="STM2535" /db_xref="GeneID:1254057" CDS complement(2675232..2676017) /gene="sseB" /locus_tag="STM2535" /note="similar to E. coli enhanced serine sensitivity (AAC75575.1); Blastp hit to AAC75575.1 (261 aa), 90% identity in aa 1 - 261" /codon_start=1 /transl_table=11 /product="enhances serine sensitivity" /protein_id="NP_461470.3" /db_xref="GI:1109557702" /db_xref="GeneID:1254057" /translation="MIPMSETKNELEILLEKAATEPAHRPAFFRTLLESTVWVPGSAA EGEAIVEDSALDLQHWEKEDGTTVIPFFTSLEALQQAVEDEQAFVVMPARTLFEMTLG ETLFLNAKLPTGKEFMPREISLLLAEEGSPLSTQEVLEGGESLILSEVAEPPSQMIDS LTTLFKTIKPVKRAFLCAIKEHADAQPNLLIGIEADGEIEEIIHAAGNVATDTLPGDE PIDICQVRKGEQGISHFITEHIAPFYERRWGGFLRDFKQNRII" gene complement(2676118..2677414) /gene="pepB" /locus_tag="STM2536" /db_xref="GeneID:1254058" CDS complement(2676118..2677401) /gene="pepB" /locus_tag="STM2536" /note="similar to E. coli putative peptidase (AAC75576.1); Blastp hit to AAC75576.1 (456 aa), 91% identity in aa 30 - 456" /codon_start=1 /transl_table=11 /product="aminopeptidase PepB" /protein_id="NP_461471.1" /db_xref="GI:16765856" /db_xref="GeneID:1254058" /translation="MTEAMKITLSTQPADARWGDKATYSINNDGITLHLNGKDDLGLI QRAARKIDGLGIKQVALTGEGWDTERCWAFWAGYKGPKGVRTVMWPDLDDAQRQELDN RLTIIDWVRDTINAPAEELGPEQLAQRAVDLLCSVACDSVTYRITKGEDLREQNYMGL HTVGRGSERPPVLLALDYNPTGDKDAPVYACLVGKGITFDSGGYSIKQSAFMDSMKSD MGGAATVTGALAFAITRGLNKRVKLFLCCADNLISGNAFKLGDIIRYRNGKNVEVMNT DAEGRLVLADGLIDASAQHPQLIIDMATLTGAAKTALGNDYHALFSFDDTLAGRLLTS AAQENEPFWRLPLAEFHRNQLPSNFAELNNTGSAAYPAGASTAAGFLSHFVENYREGW LHIDCSATYRKAPVEQWAAGATGLGVRTIANLLTA" regulatory complement(2677409..2677414) /regulatory_class="ribosome_binding_site" /gene="pepB" /locus_tag="STM2536" /note="putative RBS for pepB; RegulonDB:STMS1H002638" gene complement(2677648..2677857) /gene="yfhJ" /locus_tag="STM2537" /db_xref="GeneID:1254059" CDS complement(2677648..2677848) /gene="yfhJ" /locus_tag="STM2537" /note="believed to be involved in assembly of Fe-S clusters; similar to E. coli orf, hypothetical protein (AAC75577.1); Blastp hit to AAC75577.1 (66 aa), 92% identity in aa 1 - 66" /codon_start=1 /transl_table=11 /product="Fe-S assembly protein IscX" /protein_id="NP_461472.1" /db_xref="GI:16765857" /db_xref="GeneID:1254059" /translation="MGLKWTDSREIGEALYDAYPDVDPKTVRFTDLHQWICELDDFDD DPNASNEKILEAILLVWLDEAE" regulatory complement(2677852..2677857) /regulatory_class="ribosome_binding_site" /gene="yfhJ" /locus_tag="STM2537" /note="putative RBS for yfhJ; RegulonDB:STMS1H002639" gene complement(2677860..2678205) /gene="fdx" /locus_tag="STM2538" /db_xref="GeneID:1254060" CDS complement(2677860..2678195) /gene="fdx" /locus_tag="STM2538" /note="electron carrer protein; believed to be involved in assembly of Fe-S clusters; similar to E. coli [2FE-2S] ferredoxin, electron carrer protein (AAC75578.1); Blastp hit to AAC75578.1 (111 aa), 94% identity in aa 1 - 111" /codon_start=1 /transl_table=11 /product="ISC system 2Fe-2S type ferredoxin" /protein_id="NP_461473.1" /db_xref="GI:16765858" /db_xref="GeneID:1254060" /translation="MPKIVILPHQDLCPDGAVLEAETGETILDVALRNGIEIEHACEK SCACTTCHCIVREGFDSLPESSEEEDDMLDKAWGLEPESRLSCQARVTDDDLVIEIPR YTINHAREH" gene complement(2678197..2680059) /gene="hscA" /locus_tag="STM2539" /db_xref="GeneID:1254061" CDS complement(2678197..2680047) /gene="hscA" /locus_tag="STM2539" /note="member of Hsp70 protein family; believed to be involved in assembly of Fe-S clusters; similar to E. coli heat shock protein, chaperone, member of Hsp70 protein family (AAC75579.1); Blastp hit to AAC75579.1 (616 aa), 94% identity in aa 1 - 616" /codon_start=1 /transl_table=11 /product="Fe-S protein assembly chaperone HscA" /protein_id="NP_461474.1" /db_xref="GI:16765859" /db_xref="GeneID:1254061" /translation="MALLQISEPGLSAAPHQRRLAAGIDLGTTNSLVATVRSGQAETL PDHEGRHLLPSVVHYQQQGHTVGYAARDNAAQDTANTISSVKRMMGRSLADIQTRYPH LPYRFKASVNGLPMIDTAAGLLNPVRVSADILKALAARASESLSGELDGVVITVPAYF DDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGKEGVIAVYDLGGGTFDISIL RLSRGVFEVLATGGDSALGGDDFDHLLADYIREQAGIADRSDNRVQRELLDAAIAAKI ALSDADTVRVNVAGWQGEITREQFNDLISALVKRTLLACRRALKDAGVEPQDVLEVVM VGGSTRVPLVRERVGEFFGRTPLTAIDPDKVVAIGAAIQADILVGNKPDSEMLLLDVI PLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRS LARFALRGIPPLPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDGE IASMIKDSMSFAEQDVKARMLAEQKVEAARVLESLTGALTADAALLSAAERQCIDDAA AHLSAVAQGDDVDAIEQAIKNVDKQTQEFAARRMDQSVRRALKGHSVDEV" regulatory complement(2678200..2678205) /regulatory_class="ribosome_binding_site" /gene="fdx" /locus_tag="STM2538" /note="putative RBS for fdx; RegulonDB:STMS1H002640" regulatory complement(2680054..2680059) /regulatory_class="ribosome_binding_site" /gene="hscA" /locus_tag="STM2539" /note="putative RBS for hscA; RegulonDB:STMS1H002641" gene complement(2680060..2680608) /gene="hscB" /locus_tag="STM2540" /db_xref="GeneID:1254062" CDS complement(2680060..2680575) /gene="hscB" /locus_tag="STM2540" /note="believed to be involved in assembly of Fe-S clusters; similar to E. coli orf, hypothetical protein (AAC75580.1); Blastp hit to AAC75580.1 (171 aa), 91% identity in aa 1 - 171" /codon_start=1 /transl_table=11 /product="co-chaperone HscB" /protein_id="NP_461475.1" /db_xref="GI:16765860" /db_xref="GeneID:1254062" /translation="MDYFTLFGLPARYQIDTQALSLRFQDLQRQYHPDKFANGTQAQQ LAAVQQSATINQAWQTLRHPLTRAEYLLSLHGFDLASEQHTVRDTAFLMEQLTLREEL DDIEQSKDDARLESFIKRVQKMFDARLQQMVEQLDNAAWDAAADTVRKLRFLDKLRSS AEQLEEKLLDF" regulatory complement(2680579..2680584) /regulatory_class="ribosome_binding_site" /gene="hscB" /locus_tag="STM2540" /note="putative RBS for hscB; RegulonDB:STMS1H002642" regulatory complement(2680584..2680592) /regulatory_class="minus_10_signal" /gene="hscB" /locus_tag="STM2540" /note="putative -10_signal for hscB; RegulonDB:STMLTH004553" regulatory complement(2680600..2680608) /regulatory_class="minus_35_signal" /gene="hscB" /locus_tag="STM2540" /note="putative -35_signal for hscB; RegulonDB:STMLTH004553" gene complement(2680771..2681105) /gene="yfhF" /locus_tag="STM2541" /db_xref="GeneID:1254063" CDS complement(2680771..2681094) /gene="yfhF" /locus_tag="STM2541" /note="similar to E. coli putative regulator (AAC75581.1); Blastp hit to AAC75581.1 (107 aa), 97% identity in aa 1 - 107" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster assembly protein IscA" /protein_id="NP_461476.1" /db_xref="GI:16765861" /db_xref="GeneID:1254063" /translation="MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEF VDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCG ESFHV" regulatory complement(2681100..2681105) /regulatory_class="ribosome_binding_site" /gene="yfhF" /locus_tag="STM2541" /note="putative RBS for yfhF; RegulonDB:STMS1H002643" gene complement(2681123..2681523) /gene="nifU" /locus_tag="STM2542" /db_xref="GeneID:1254064" CDS complement(2681123..2681509) /gene="nifU" /locus_tag="STM2542" /note="involved in Fe-S cluster formation; similar to E. coli orf, hypothetical protein (AAC75582.1); Blastp hit to AAC75582.1 (128 aa), 98% identity in aa 1 - 128" /codon_start=1 /transl_table=11 /product="Fe-S cluster assembly scaffold IscU" /protein_id="NP_461477.1" /db_xref="GI:16765862" /db_xref="GeneID:1254064" /translation="MAYSEKVIDHYENPRNVGSFDNNDDNVGSGMVGAPACGDVMKLQ IKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIADELELPPV KIHCSILAEDAIKAAIADYKSKREAK" regulatory complement(2681518..2681523) /regulatory_class="ribosome_binding_site" /gene="nifU" /locus_tag="STM2542" /note="putative RBS for nifU; RegulonDB:STMS1H002644" gene complement(2681537..2682767) /gene="nifS" /locus_tag="STM2543" /db_xref="GeneID:1254065" CDS complement(2681537..2682751) /gene="nifS" /locus_tag="STM2543" /note="similar to E. coli putative aminotransferase (AAC75583.1); Blastp hit to AAC75583.1 (412 aa), 97% identity in aa 9 - 412" /codon_start=1 /transl_table=11 /product="IscS subfamily cysteine desulfurase" /protein_id="NP_461478.1" /db_xref="GI:16765863" /db_xref="GeneID:1254065" /translation="MKLPIYLDYSATTPVDPRVAEKMMQFLTLDGTFGNPASRSHRFG WQAEEAVDIARNQIAELVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKT EHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLNELEAAMRDDTILVSIMHVNNEIGVV QDIATIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYV RRKPRIRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMETEMARLRGLRNR LWNGIKDIEEVYLNGDLEQGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSASLE PSYVLRALGMNDELAHSSIRFSLGRFTTEEEIDYTIDLVRKSIGRLRDLSPLWEMYKQ GVDLNSIEWAHH" regulatory complement(2682762..2682767) /regulatory_class="ribosome_binding_site" /gene="nifS" /locus_tag="STM2543" /note="putative RBS for nifS; RegulonDB:STMS1H002645" gene complement(2682932..2683441) /gene="yfhP" /locus_tag="STM2544" /db_xref="GeneID:1254066" CDS complement(2682932..2683426) /gene="yfhP" /locus_tag="STM2544" /note="believed to be involved in assembly of Fe-S clusters; similar to E. coli orf, hypothetical protein (AAC75584.1); Blastp hit to AAC75584.1 (162 aa), 96% identity in aa 1 - 162" /codon_start=1 /transl_table=11 /product="Fe-S cluster assembly transcriptional regulator IscR" /protein_id="NP_461479.1" /db_xref="GI:16765864" /db_xref="GeneID:1254066" /translation="MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQ LFSRLRKNGLVSSVRGPGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQGGD KCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRASGRAQDAIDV KLRA" regulatory complement(2683436..2683441) /regulatory_class="ribosome_binding_site" /gene="yfhP" /locus_tag="STM2544" /note="putative RBS for yfhP; RegulonDB:STMS1H002646" gene complement(2683586..2684330) /locus_tag="STM2545" /db_xref="GeneID:1254067" CDS complement(2683586..2684317) /locus_tag="STM2545" /note="similar to E. coli putative ATP synthase beta subunit (AAC75585.1); Blastp hit to AAC75585.1 (246 aa), 97% identity in aa 1 - 242" /codon_start=1 /transl_table=11 /product="tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ" /protein_id="NP_461480.1" /db_xref="GI:16765865" /db_xref="GeneID:1254067" /translation="MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDS QAIALAAGASDVIGNAQIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA EAANTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAW LATQENGDAADHEETPYPLVDDLERFYGHLEQTLLSTGFIRENHPGQVMNKLRRLFTR ARPESQELNILRGILASIEQQNKGK" regulatory complement(2684325..2684330) /regulatory_class="ribosome_binding_site" /locus_tag="STM2545" /note="putative RBS for STM2545; RegulonDB:STMS1H002647" gene 2684427..2685239 /gene="suhB" /locus_tag="STM2546" /db_xref="GeneID:1254068" regulatory 2684427..2684432 /regulatory_class="ribosome_binding_site" /gene="suhB" /locus_tag="STM2546" /note="putative RBS for suhB; RegulonDB:STMS1H002649" CDS 2684436..2685239 /gene="suhB" /locus_tag="STM2546" /note="similar to E. coli enhances synthesis of sigma32 in mutant; extragenic suppressor, may modulate RNAse III lethal action (AAC75586.1); Blastp hit to AAC75586.1 (267 aa), 97% identity in aa 1 - 267" /codon_start=1 /transl_table=11 /product="inositol monophosphatase" /protein_id="NP_461481.1" /db_xref="GI:16765866" /db_xref="GeneID:1254068" /translation="MHPMLTIAVRAARKAGNVIAKNYETPDAVEASQKGSNDFVTNVD KAAEAVIIDTIRKSYPQHTIITEESGEHVGTDQDVQWVIDPLDGTTNFIKRLPHFAVS IAVRIKGRTEVAVVYDPMRNELFTATRGQGAQLNGYRLRGSTARDLDGTILATGFPFK AKQYATTYINIIGKLFTECADFRRTGSAALDLAYVAAGRVDGFFEIGLRPWDFAAGEL LVREAGGIVSDFTGGHNYMMTGNIVAGNPRVVKAMLANMRDELSDALKR" gene 2685372..2686262 /locus_tag="STM2547" /db_xref="GeneID:1254069" regulatory 2685372..2685377 /regulatory_class="ribosome_binding_site" /locus_tag="STM2547" /note="putative RBS for STM2547; RegulonDB:STMS1H002650" CDS 2685384..2686262 /locus_tag="STM2547" /note="similar to E. coli putative enzyme (3.4.-) (AAC75587.1); Blastp hit to AAC75587.1 (293 aa), 66% identity in aa 10 - 290" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461482.1" /db_xref="GI:16765867" /db_xref="GeneID:1254069" /translation="MTLQHTRRIVKSLFILFIIVVCIYLLPRVAINAFYYPDNKVYGP TPAEAESITFTAKDGTHLHGWFIPTAFGRPENAVATVIHVHGNAGNMSAHWPLVSWLP ERNVNLFMFDYRGFGESEGTPSQEGLLDDTKSAIDYVRHRADVNPERLVLLGQSLGGN NVLAAVGHCVGCANMRYADQAGIRAIILDSTFLSYSSIANQMIPGSGYLLDDRYSADR NIASVSPIPVLILHGTADHVIPWQDSEKLYALAREPKQKIFIPDGDHIDAFSGRYANL YRDAMIKFIQTALSAK" gene 2686437..2687487 /gene="asrA" /locus_tag="STM2548" /db_xref="GeneID:1254070" regulatory 2686437..2686442 /regulatory_class="ribosome_binding_site" /gene="asrA" /locus_tag="STM2548" /note="putative RBS for asrA; RegulonDB:STMS1H002651" CDS 2686444..2687487 /gene="asrA" /locus_tag="STM2548" /note="anaerobic sulfite reductase subunit A (anaerobic sulfite reductaseiron-sulfur subunit). (SW:ASRA_SALTY)" /codon_start=1 /transl_table=11 /product="anaerobic sulfite reductase subunit A" /protein_id="NP_461483.1" /db_xref="GI:16765868" /db_xref="GeneID:1254070" /translation="MAIKITPDEFSLLIQRLNKKWRVFAPSAEFRGGRFSDTDNIIYQ RISGWRDLIWHEKSHMSPNTIIAPITETLFYFDKDTIQIAETDTSPIIIFARACDINA MSRLDYMYLSNGNNSDYSYQLLREHIRFVLIECEESFENCFCVSMGTNKTDCYSAAMR FSDEGALVSIRDPFIEAAIQGLGQEADYTPSFVSENRETVVTPDSVCHDPQKIRDILT HHPLWDAYDSRCISCGRCTTGCPTCTCYSVFDVAYDENPQRGERRRQWASCMVPGFSD MAGGHGFREKPGERLRYRALHKVNDYKARNGIEHMCVGCGRCDDRCPQYIKFSLIINK MTAAVRQALAEEA" gene 2687483..2688309 /gene="asrB" /locus_tag="STM2549" /db_xref="GeneID:1254071" regulatory 2687483..2687488 /regulatory_class="ribosome_binding_site" /gene="asrB" /locus_tag="STM2549" /note="putative RBS for asrB; RegulonDB:STMS1H002652" CDS 2687491..2688309 /gene="asrB" /locus_tag="STM2549" /note="anaerobic sulfite reductase subunit B. (SW:ASRB_SALTY)" /codon_start=1 /transl_table=11 /product="anaerobic sulfite reductase subunit B" /protein_id="NP_461484.1" /db_xref="GI:16765869" /db_xref="GeneID:1254071" /translation="MSHCSCHDKPQHSLLPAAYRILSITRHTPLEWNFRVAVDFPAHW GQFVEVSLPRVGEAPISVSDYGDGWIDLLIRNVGKVTSALFTLKEGDNVWLRGCYGNG YPVDTLRHKPLLVVAGGTGVAPVKGLMRYFVENPQEIGQLDMILGYKNRDCVLYKEEM ATWRGKHNLVLTLDEGEADDRYQIGRVTDRLADMTLSDIDTMQAIVVGPPIMITFTVK MLLQKGLKPEQIWVDYERRMACSVGKCGHCRMGEVYVCTDGPIFNYAVAQRFAD" gene 2688313..2689333 /gene="asrC" /locus_tag="STM2550" /db_xref="GeneID:1254072" regulatory 2688313..2688318 /regulatory_class="ribosome_binding_site" /gene="asrC" /locus_tag="STM2550" /note="putative RBS for asrC; RegulonDB:STMS1H002653" CDS 2688320..2689333 /gene="asrC" /locus_tag="STM2550" /note="anaerobic sulfite reductase subunit C. (SW:ASRC_SALTY)" /codon_start=1 /transl_table=11 /product="sulfite reductase subunit C" /protein_id="NP_461485.1" /db_xref="GI:16765870" /db_xref="GeneID:1254072" /translation="MSIDIDIIKARAKNEYRLSKVRGEAMISVRIPGGILPAHLLTVA RDIAETWGNGQIHLTTRQKLAMPGIRYEDIDNVNAALEPFLREIEIELCDVQVEDTKA GYLAIGGRNIVACQGNRICQKANTDTTGLSRRLEKLVYPSPYHLKTVIVGCPNDCAKA SMADLGIIGVAKMRFTADRCIGCGACVKACSHHAVGCLALKNGKAVKEESACIGCGEC VLACPTLAWQRKPDQLWQVRLGGRTSKKTPRVGKLFLNWVTEDVIKQVIVNLYEFEKE MLGGKPIYLHMGHLIDKGGYLRFKERVLRGVQLNPEAMVAERIYWAEDESVARMHLKP AGH" gene complement(2689334..2690325) /locus_tag="STM2551" /db_xref="GeneID:1254073" CDS complement(2689334..2690320) /locus_tag="STM2551" /codon_start=1 /transl_table=11 /product="nickel transporter" /protein_id="NP_461486.1" /db_xref="GI:16765871" /db_xref="GeneID:1254073" /translation="MSVIFSQRTPGRRWLSLWPLALFLLLMLVGGLWMWQAWPQVMLK SALWQRDVNQQLSALLNAVATHPERAGGSLLLLSFMYGVLHALGPGHGKVVIATWLAT HPSKLKSSIVLTLAAALLQGLVAIGLVVGVLTVLQLPARQLHLSGFWLEKGSYALVGG LGILLCWRAIKRLRALLRKPVFIAFTPRHVHHEKCGCGHQHLPTQEQLHSGDDWRARF MIVLSMGMRPCSGAIMVLLFSKVIGVFSWGMASVLAMAAGTSLTITSLALLVHTFRAL AVKLSGNKAPALWRQVGWSTLALAGGGILLVAALVMWFSVPQPVGGLRPWRG" gene complement(2690311..2690956) /locus_tag="STM2552" /db_xref="GeneID:1254074" CDS complement(2690311..2690949) /locus_tag="STM2552" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461487.1" /db_xref="GI:16765872" /db_xref="GeneID:1254074" /translation="MKPVKRSALTLFLAVLSFVAAAHPHSFIRLQTQVVSENEQFVAL KMRWTMDALTSADLLYDAGNAAPGSEIWKKLAAEVMANVLGQHYFTEVWRNGAKVKFK NRPTEYGMTRDAHQAVLTFTLPLAEPQPLSGQTYTFSTFDPSYYVDMHYDQDSDITMP EPLREKCRIQVYTPAPGEETLRFAQSLDKEDAPPEDMDLGKQFAQTVTLQCQ" regulatory complement(2690320..2690325) /regulatory_class="ribosome_binding_site" /locus_tag="STM2552" /note="putative RBS for STM2551; RegulonDB:STMS1H002654" regulatory complement(2690951..2690956) /regulatory_class="ribosome_binding_site" /locus_tag="STM2552" /note="putative RBS for STM2552; RegulonDB:STMS1H002655" gene 2691059..2692352 /gene="csiE" /locus_tag="STM2553" /db_xref="GeneID:1254075" regulatory 2691059..2691064 /regulatory_class="ribosome_binding_site" /gene="csiE" /locus_tag="STM2553" /note="putative RBS for csiE; RegulonDB:STMS1H002656" CDS 2691075..2692352 /gene="csiE" /locus_tag="STM2553" /note="similar to E. coli orf, hypothetical protein (AAC75588.1); Blastp hit to AAC75588.1 (433 aa), 71% identity in aa 8 - 432" /codon_start=1 /transl_table=11 /product="stationary phase inducible protein CsiE" /protein_id="NP_461488.1" /db_xref="GI:16765873" /db_xref="GeneID:1254075" /translation="MMPTIAPPSVLSAPQRRCQVLLTLFQPEPIATVEIFSALNGVDD DTAREDITETSLEIQRYHRLAITTCQNGCYRIEGTALDQRLCLLHWLRRGLRLCPTFV TQQFTPALKNALKQRGIARPLYDDINLHALINLCARRLQKPFEHRDVQFLRLFLQYCL LQHHAGITPEFNPVQQIWAQSCAEYPLAQEIGRHWQRHVMQAAPLNEALFMALLFSMI RLPDPIRDTHQRAQQLRLEVARLVLRFREKGNVRFSDEQGLNDQLYVHLAQALNRSLF TIGIDNTLPEEFNRLYPRLVRTTREALAGFEAEYGIHFSEEETGLVAVIFGAWLMQDN DLHERQIVLLADKNDALETHIEQQLRELTLLPLNIRRISLQAFQKEGCPRGVALIVTP YATPLPLFSPPLIHADRALTEHQQQQIRKILES" gene complement(2692347..2693495) /gene="hcaT" /locus_tag="STM2554" /db_xref="GeneID:1254076" CDS complement(2692347..2693486) /gene="hcaT" /locus_tag="STM2554" /note="similar to E. coli MFS (major facilitator superfamily) transporter (AAC75589.1); Blastp hit to AAC75589.1 (379 aa), 88% identity in aa 1 - 376" /codon_start=1 /transl_table=11 /product="3-phenylpropionic acid transporter" /protein_id="NP_461489.1" /db_xref="GI:16765874" /db_xref="GeneID:1254076" /translation="MALHSTRWLALSYFTYFFSYGIFLPFWSVWLKGLGLTPETIGLL LGVGLVARFLGSLLIAPRVSDPSRLISALRVLALLTLVFALAFWAGTHVAWLMVVMVG FNLFFSPLVPLTDALANTWQKQITLDYGRVRLWGSIAFVIGSALTGKLVSLYDYQAIL ALLTLGVASMLLGMLLRPSVPPQGESRQQESAGWPAWRTLVAQSWRFLACVCLLQGAH AAYYGFSAIYWQGAGYSASAVGYLWSLGVVAEVIIFALSKKLFRRFSARDLLLLSAVC GVVRWGLMGWSTALPWLIVIQILHCGTFTVCHLAAMRYIAARQGSEVIRLQAVYSAVA MGGSIAIMTVFAGFLYQHLGGGVFWIMALVALPAIFLRPKVVAAS" regulatory complement(2693490..2693495) /regulatory_class="ribosome_binding_site" /gene="hcaT" /locus_tag="STM2554" /note="putative RBS for hcaT; RegulonDB:STMS1H002657" gene complement(2693682..2695130) /gene="glyA" /locus_tag="STM2555" /db_xref="GeneID:1254077" CDS complement(2693682..2694935) /gene="glyA" /locus_tag="STM2555" /EC_number="2.1.2.1" /note="serine hydroxymethyltransferase. (SW:GLYA_SALTY)" /codon_start=1 /transl_table=11 /product="serine hydroxymethyltransferase" /protein_id="NP_461490.1" /db_xref="GI:16765875" /db_xref="GeneID:1254077" /translation="MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVM QAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQAN FAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAK LAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP HAHVVTTTTHKTLAGPRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVAL KEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEAD AALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN INDEATIERVKAKVLDICARFPVYA" regulatory complement(2694942..2694947) /regulatory_class="ribosome_binding_site" /gene="glyA" /locus_tag="STM2555" /note="putative RBS for glyA; RegulonDB:STMS1H002658" protein_bind complement(2695049..2695065) /gene="glyA" /locus_tag="STM2555" /note="putative binding site for PurR, RegulonDB: STMS1H000349" /bound_moiety="PurR" regulatory complement(2695104..2695112) /regulatory_class="minus_10_signal" /gene="glyA" /locus_tag="STM2555" /note="putative -10_signal for glyA; RegulonDB:STMLTH004554" regulatory complement(2695122..2695130) /regulatory_class="minus_35_signal" /gene="glyA" /locus_tag="STM2555" /note="putative -35_signal for glyA; RegulonDB:STMLTH004554" protein_bind complement(2695139..2695163) /note="putative binding site for MetR, RegulonDB: STMS1H000289" /bound_moiety="MetR" gene 2695248..2696450 /gene="hmpA" /locus_tag="STM2556" /db_xref="GeneID:1254078" regulatory 2695248..2695253 /regulatory_class="ribosome_binding_site" /gene="hmpA" /locus_tag="STM2556" /note="putative RBS for hmpA; RegulonDB:STMS1H002659" CDS 2695260..2696450 /gene="hmpA" /locus_tag="STM2556" /EC_number="1.5.1.34" /note="contains nitric oxide dioxygenase activity; flavohemoprotein; hemoglobin-like protein; flavohemoglobin)(dihydropteridine reductase. (SW:HMPA_SALTY)" /codon_start=1 /transl_table=11 /product="nitric oxide dioxygenase" /protein_id="NP_461491.1" /db_xref="GI:16765876" /db_xref="GeneID:1254078" /translation="MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFN MSNQRNGDQREALFNAIAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGTHL LATLDEMFNPGQEVLDAWGKAYGVLANVFIHREAEIYHENASKDGGWEGTRPFRIVAK TPRSALITSFEFEPVDGGTVAEYRPGQYLGVWLKPEGFAHQEIRQYSLTRKPDGKGYR IAVKREDGGQVSNWLHHHASVGDGVHLAAPAGDFFMNVAADTPVSLISAGVGQTPMLA MLDTLAKEQHTAQVNWFHAAENGDVHAFADEVSELGRTLPRFTAHTWYREPTESDRAQ RLFDSEGLMDLSKLEAAISDPAMQFYLCGPVGFMQFAAKQLVSLGVNNENIHYECFGP HKVL" gene 2696564..2698176 /gene="cadC" /locus_tag="STM2557" /db_xref="GeneID:1254079" regulatory 2696564..2696572 /regulatory_class="minus_35_signal" /gene="cadC" /locus_tag="STM2557" /note="putative -35_signal for cadC; RegulonDB:STMLTH004555" regulatory 2696590..2696598 /regulatory_class="minus_10_signal" /gene="cadC" /locus_tag="STM2557" /note="putative -10_signal for cadC; RegulonDB:STMLTH004555" regulatory 2696618..2696623 /regulatory_class="ribosome_binding_site" /gene="cadC" /locus_tag="STM2557" /note="putative RBS for cadC; RegulonDB:STMS1H002660" CDS 2696632..2698176 /gene="cadC" /locus_tag="STM2557" /note="OmpR family; similar to E. coli transcriptional activator of cad operon (AAC77094.1); Blastp hit to AAC77094.1 (512 aa), 58% identity in aa 1 - 512" /codon_start=1 /transl_table=11 /product="transcriptional regulator CadC" /protein_id="NP_461492.1" /db_xref="GI:16765877" /db_xref="GeneID:1254079" /translation="MQQPVVRIGEWLVTPSVNQISRQGRQITLEPRLIDLLMYFAHHP DEVLSRDNIIDHVWMRTIVTNHVVTQSISELRKSLRDGGDSNAEYIVTVPKRGYKLTA PVIWCEENSDEIDNSSTSPPPPIAATNAEPTEGVTAATPVPPASLQTPTKKAKKPRIA AFWTWVMFLLSLATLVVFIVMSVVDHNAAVTKTRLLLNPRDIDVRFEGGNSCNNWVSQ ESYAIGLGGLITDLLNTYSTFMVHDKTNYRVNEPSSSGKTLTIQFVNQRHYRAQQCFM SVVLIDNADGSTMLDKRYFVTNTNQLSIQDDLFNSLSFVLTQPWPNRMREQLALFRTP QNTALMRFYEARQLILSGDAQALGKASDILNGIIKETPDFNYAYEYKVLVDVLRQSQQ PFDKEQVAALNEEFKKIDQIPGVEKTSVYYKIKTVDLLGKGDIDAAYEEINKSIELEM SWFNYVLLGKVYEMKGENRLAADAYLTAFNLRPGENTLYWIENGVFQTSVQKIVPYLN SFLAED" gene 2698371..2699868 /gene="cadB" /locus_tag="STM2558" /db_xref="GeneID:1254080" regulatory 2698371..2698379 /regulatory_class="minus_35_signal" /gene="cadB" /locus_tag="STM2558" /note="putative -35_signal for cadB; RegulonDB:STMLTH004556" regulatory 2698399..2698407 /regulatory_class="minus_10_signal" /gene="cadB" /locus_tag="STM2558" /note="putative -10_signal for cadB; RegulonDB:STMLTH004556" regulatory 2698523..2698528 /regulatory_class="ribosome_binding_site" /gene="cadB" /locus_tag="STM2558" /note="putative RBS for cadB; RegulonDB:STMS1H002661" CDS 2698537..2699868 /gene="cadB" /locus_tag="STM2558" /note="similar to E. coli transport of lysine/cadaverine (AAC77093.1); Blastp hit to AAC77093.1 (444 aa), 90% identity in aa 1 - 440" /codon_start=1 /transl_table=11 /product="lysine:cadaverine antiporter" /protein_id="NP_461493.1" /db_xref="GI:16765878" /db_xref="GeneID:1254080" /translation="MSSVKKIGLFACTGVVAGNMMGSGIALLPANLASIGGIAIWGWV ISIIGAMSLAYVYARLATKNPQQGGPIAYAGEISPAFGFQTGVLYYHANWIGNLAIGI TAVSYLSTFFPALNNPIPAGIACIAIVWLFTFINMLGGAWVSRLTTIGLFLVLIPVVL TAVAGWHWFDIATYHANWNTSTTTDSHAIVKSILLCLWAFVGVESAAVSTGMVKNPKR TVPLATMLGTALAGIIYIAATQVIAGMFPASVMASSGAPFAISTSTILGGWAAPLVSA FTAFACLTSLGSWMMLVGQAGVRAANDGNFPKIYGEMDKNGIPKKGLLLAAVKMTALM ILITIMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFEGFNIRNSVSLICSVL GCAFCFIALMGASSFELSGTFIVSLIILMFYGRKMHQRQNNDSDNNTAEAL" gene 2699938..2702095 /gene="cadA" /locus_tag="STM2559" /db_xref="GeneID:1254081" regulatory 2699938..2699943 /regulatory_class="ribosome_binding_site" /gene="cadA" /locus_tag="STM2559" /note="putative RBS for cadA; RegulonDB:STMS1H002662" CDS 2699951..2702095 /gene="cadA" /locus_tag="STM2559" /EC_number="4.1.1.18" /note="lysine decarboxylase, inducible. (SW:DCLY_SALTY)" /codon_start=1 /transl_table=11 /product="lysine decarboxylase LdcC" /protein_id="NP_461494.1" /db_xref="GI:16765879" /db_xref="GeneID:1254081" /translation="MNVIAIMNHMGVYFKEEPIRELHRALEGLNFRIVYPNDREDLLK LIENNSRLCGVIFDWDKYNLELCEEISKLNEYMPLYAFANSYSTLDVSLNDLRMQVRF FEYALGAAADIAAKIRQNTDEYIDNILPPLTKALFKYVREGKYTFCTPGHMGGTAFQK SPVGSIFYDFFGPNTMKSDISISVSELGSLLDHSGPHKEAEEYIARVFNAERSYMVTN GTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMSDITPIYFRPTRNAYGILGGIP QSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDYIKKTLDVKSIHFDSAWV PYTNFSPIYQGKCGMSGDRVEGKIIYETQSTHKLLAAFSQASMIHVKGDINEETFNEA YMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLKSESDGWF FDVWQPEHIDGAECWPLRSDSAWHGFKNIDNEHMYLDPIKVTILTPGMKKDGTMDEFG IPASLVAKYLDERGIIVEKTGPYNLLFLFSIGIDKTKALSLLRALTEFKRAFDLNLRV KNILPALYREAPEFYENMRIQELAQNIHKLVEHHNLPDLMYRAFEVLPKMVMTPYTAF QKELHGETEEVYLEEMVGRVNANMILPYPPGVPLVMPGEMITEESRPVLEFLQMLCEI GAHYPGFETDIHGAYRQADGRYTVKVLKENTK" gene 2702140..2703611 /gene="yjdL" /locus_tag="STM2560" /db_xref="GeneID:1254082" regulatory 2702140..2702145 /regulatory_class="ribosome_binding_site" /gene="yjdL" /locus_tag="STM2560" /note="putative RBS for yjdL; RegulonDB:STMS1H002663" CDS 2702151..2703611 /gene="yjdL" /locus_tag="STM2560" /note="similar to E. coli putative peptide transporter (AAC77091.1); Blastp hit to AAC77091.1 (485 aa), 80% identity in aa 1 - 484" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_461495.1" /db_xref="GI:16765880" /db_xref="GeneID:1254082" /translation="MKTPSQPRAIFYIVAIQIWEYFSFYGMRALLILYLTHQLGFNDS HAINLFSAYASLVYVTPILGGWLADRLLGNRVAVITGALLMTLGHVVLGLESDSTLSL YAALAIIICGYGLFKSNISCLLGELYAPDDNRRDGGFSLLYAAGNIGSIAAPIACGLA AQWYGWHVGFALAGVGMFIGLLIFLSGHRHFQQTRGVNRPALRAVKFALPTWGWLVLM LCIAPVFFTLLLENNWSGYVLAIVCVFAAQLIARIMVKFPEHRRALWQIVLLMITGTL FWVLAQQGGSSISLFIDRFVNRHWLNMTVPTALFQSVNAIAVMAAGVVLAWLSSPKES ARSVLRVWLKFAVGLVLMGGGFMLLALNAHQARLDGQASMGMMIAGLALMGFAELFID PVAMAQITRLNLPGVTGVLTGIYMLATGAVANWLAGVVAQQTTESQISDTAVAAYGHF FSQMGEWTLSCVALIVAIVGLRWVCTRTTSALPQGD" gene complement(2703660..2704089) /gene="glnB" /locus_tag="STM2561" /db_xref="GeneID:1254083" CDS complement(2703660..2703998) /gene="glnB" /locus_tag="STM2561" /note="similar to E. coli regulatory protein P-II for glutamine synthetase (AAC75606.1); Blastp hit to AAC75606.1 (112 aa), 100% identity in aa 1 - 112" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_461496.1" /db_xref="GI:16765881" /db_xref="GeneID:1254083" /translation="MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTE LYRGAEYMVDFLPKVKIEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRI RTGEEDDAAI" regulatory complement(2704003..2704008) /regulatory_class="ribosome_binding_site" /gene="glnB" /locus_tag="STM2561" /note="putative RBS for glnB; RegulonDB:STMS1H002664" protein_bind complement(2704037..2704054) /gene="glnB" /locus_tag="STM2561" /note="putative binding site for PurR, RegulonDB: STMS1H000356" /bound_moiety="PurR" regulatory complement(2704065..2704073) /regulatory_class="minus_10_signal" /gene="glnB" /locus_tag="STM2561" /note="putative -10_signal for glnB; RegulonDB:STMLTH004557" gene complement(2704075..2705423) /gene="yfhA" /locus_tag="STM2562" /db_xref="GeneID:1254084" CDS complement(2704075..2705412) /gene="yfhA" /locus_tag="STM2562" /note="EBP family; similar to E. coli putative 2-component transcriptional regulator (AAC75607.1); Blastp hit to AAC75607.1 (444 aa), 95% identity in aa 1 - 444" /codon_start=1 /transl_table=11 /product="two-component system response regulator GlrR" /protein_id="NP_461497.1" /db_xref="GI:16765882" /db_xref="GeneID:1254084" /translation="MISRKPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEGLR VLHREKVDLVISDLRMDEMDGMQLFTEIQKVQPGMPVIILTAHGSIPDAVAATQKGVF SFLTKPIDRDALYKAIDEALEQSAPATDDSWRNAIVTRSPLMLRLLEQARMVAQSDVS VLINGQSGTGKEIFAQAIHNASPRSNKPFVAINCGALPEQLLESELFGHARGAFTGAV SNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISA THRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQSAQRHKPFV RAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTF AEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE" regulatory complement(2704081..2704089) /regulatory_class="minus_35_signal" /gene="glnB" /locus_tag="STM2561" /note="putative -35_signal for glnB; RegulonDB:STMLTH004557" gene complement(2705409..2706173) /gene="yfhG" /locus_tag="STM2563" /db_xref="GeneID:1254085" CDS complement(2705409..2706173) /gene="yfhG" /locus_tag="STM2563" /note="EBP family; similar to E. coli putative alpha helix protein (AAC75608.1); Blastp hit to AAC75608.1 (237 aa), 63% identity in aa 1 - 234" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator of two-component regulator protein (EBP familiiy)" /protein_id="NP_461498.1" /db_xref="GI:16765883" /db_xref="GeneID:1254085" /translation="MNLSLVRMSHVFVQTIKRCLLRWGIPVGISCLALTACVPHASQQ LPGSAAQDTLPHYQLADYLPTACADIWSLRGQAVETNPLYWLRTIDCADRLMPVQSRA EARALTDDNWQNAFRRGILLADAKITPPERRAIVTRLEALSAQIPAQVRPVYQIWHDG QALQLALSAERQRYSKLQQMSDSELDALRQQQQALQTQLDLTTRKLESLTDIERQLST RKPAGNYNADTPHTNDKPATSEDGAAPSPSQDEVTP" regulatory complement(2705418..2705423) /regulatory_class="ribosome_binding_site" /gene="yfhG" /locus_tag="STM2563" /note="putative RBS for yfhA; RegulonDB:STMS1H002665" gene complement(2706175..2707617) /gene="yfhK" /locus_tag="STM2564" /db_xref="GeneID:1254086" CDS complement(2706175..2707617) /gene="yfhK" /locus_tag="STM2564" /EC_number="2.7.3.-" /note="similar to E. coli putative 2-component sensor protein (AAC75609.1); Blastp hit to AAC75609.1 (496 aa), 87% identity in aa 19 - 496" /codon_start=1 /transl_table=11 /product="putative sensory kinase in regulatory system" /protein_id="NP_461499.1" /db_xref="GI:16765884" /db_xref="GeneID:1254086" /translation="MSDTLKRWSVFPRSLRQLVMLAFLLILLPLLVLAWQAWQSLNAL SDQAAVTNRSTLIDARRSEAMTNVALEMERSYRQYCVLDDPTLAKVYQSQRKRYSDML DAHAGVLPDDKLYQALRQDLNALAQLQCKDSGPEAAAAARLEAFANANTEMVQATRTV VYSRGQQLQQEIAERGQFFGWQALVLFLVSLAMVLLFTRMIIGPVKGIERMINRLGEG RSLGNTVTFTGPRELRSVGQRIIWLSERLAWLESQRHQFLRHLSHELKTPLASMREGT ELLADQVVGPLTPEQKEVVDILDDSSRNLQKLIEQLLDYNRKLVDSATELEAVDIAPL VDMVVSAHSLPARAKMMHTDVDLEAERCIAEPMLLMSVLDNLYSNAVHYGAESGNICI RSRSQGSTVYIDVVNSGEPIPQTEREMIFEPFFQGSHQRKGAVKGSGLGLSIARDCIR RMQGEIQLVDDNAQEVCFRISLPLPASDKH" gene complement(2708255..2712297) /gene="purG" /locus_tag="STM2565" /db_xref="GeneID:1254087" CDS complement(2708255..2712142) /gene="purG" /locus_tag="STM2565" /EC_number="6.3.5.3" /note="phosphoribosylformylglycinamidine synthase. (SW:PURL_SALTY)" /codon_start=1 /transl_table=11 /product="phosphoribosylformylglycinamidine synthase" /protein_id="NP_461500.1" /db_xref="GI:16765885" /db_xref="GeneID:1254087" /translation="MMEILRGSPALSAFRINKLLARFQAANLQVHNIYAEYVHFADLN APLNDSEQAQLTRLLQYGPALSSHTPAGKLLLVTPRPGTISPWSSKATDIAHNCGLQQ VDRLERGVAYYIEASTLTAEQWRQVAAELHDRMMETVFSSLTDAEKLFIHHQPAPVSS VDLLGEGRQALIDANLRLGLALAEDEIDYLQEAFTKLGRNPNDIELYMFAQANSEHCR HKIFNADWIIDGKPQPKSLFKMIKNTFETTPDYVLSAYKDNAAVMEGSAVGRYFADHN TGRYDFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGAKPKAGLVG FSVSNLRIPGFEQPWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALTGYFRTY EEKVNSHNGEELRGYHKPIMLAGGIGNIRADHVQKGEIVVGAKLIVLGGPAMNIGLGG GAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQLGDANPILFIHDVGAGGL SNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNESQERYVLAVAADQLPLFDEL CKRERAPYAVIGDATEEQHLSLHDNHFDNQPIDLPLDVLLGKTPKMTRDVQTLKAKGD ALNRADITIADAVKRVLHLPTVAEKTFLVTIGDRTVTGMVARDQMVGPWQVPVADCAV TTASLDSYYGEAMSIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANW MAAAGHPGEDAGLYDAVKAVGEELCPQLGLTIPVGKDSMSMKTRWQEGNEQREMTSPL SLVISAFARVEDVRHTLTPQLSTEDNALLLIDLGKGHNALGATALAQVYRQLGDKPAD VRDVAQLKGFYDAMQALVAARKLLAWHDRSDGGLLVTLAEMAFAGHCGVQVDIAALGD DHLAALFNEELGGVIQVRAEDRDAVEALLAQYGLADCVHYLGQALAGDRFVITANDQT VFSESRTTLRVWWAETTWQMQRLRDNPQCADQEHEAKANDTDPGLNVKLSFDINEDIA APYIATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHAL VACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRE LIPGSELWPRFVRNHSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEVR DDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGRVTIMMPHPE RVFRTVANSWHPENWGEDSPWMRIFRNARKQLG" regulatory complement(2712149..2712154) /regulatory_class="ribosome_binding_site" /gene="purG" /locus_tag="STM2565" /note="putative RBS for purG; RegulonDB:STMS1H002666" gene 2712164..2712397 /locus_tag="STM2566" /db_xref="GeneID:1254088" CDS 2712164..2712397 /locus_tag="STM2566" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_461501.1" /db_xref="GI:16765886" /db_xref="GeneID:1254088" /translation="MVCARGETAVIIKNLTRRRNRLRRNKITAFSCHTVRLSLRISCQ LAHCYAKCRSLMTYLLQQNIFFSPRQRTIQRIN" protein_bind complement(2712213..2712231) /gene="purG" /locus_tag="STM2565" /note="putative binding site for PurR, RegulonDB: STMS1H000344" /bound_moiety="PurR" regulatory complement(2712270..2712278) /regulatory_class="minus_10_signal" /gene="purG" /locus_tag="STM2565" /note="putative -10_signal for purG; RegulonDB:STMLTH004558" regulatory complement(2712289..2712297) /regulatory_class="minus_35_signal" /gene="purG" /locus_tag="STM2565" /note="putative -35_signal for purG; RegulonDB:STMLTH004558" gene 2712385..2713942 /gene="yfhD" /locus_tag="STM2567" /db_xref="GeneID:1254089" regulatory 2712385..2712390 /regulatory_class="ribosome_binding_site" /locus_tag="STM2566" /note="putative RBS for yfhD; RegulonDB:STMS1H002667" CDS 2712398..2713942 /gene="yfhD" /locus_tag="STM2567" /note="similar to E. coli putative periplasmic binding transport protein (AAC75611.1); Blastp hit to AAC75611.1 (472 aa), 85% identity in aa 1 - 470" /codon_start=1 /transl_table=11 /product="lytic transglycosylase F" /protein_id="NP_461502.1" /db_xref="GI:16765887" /db_xref="GeneID:1254089" /translation="MKKLKINYLFIGILTLLLAAALWPSIPWFGKTENHIAAIQARGV LRVSTIDSPLTYSVINGKKYGLDYELAQQFANYLGVKLKVTVRQNISQLFDDLDNGNA DLLAAGLVYDSARVKNYQPGPMYYSVSQQLVYRVGQYRPRSLATVNENQLTIAPGHVV VNDLQRLKETKFPDLSWKVDDKKGSTTLLEEVISGKLDYTIADSVAISLFQRVHPELA VALDVTDEQPVTWFSRLDDDNTLSAALLDFFNSINEDGSLARIEEKYLGHGDDFDYVD TRSFLRAVDNVLPELEPLFKKYAKEIDWRLLAAISYQESHWDPLATSPTGVRGLMMLT KNTAQSLGLTDRTDAEQSISGGARYLEDMMAKVPETVPEDERIWFALAAYNMGYAHML DARSLTVKTKGNPDSWTDVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQIS LVGYLQEKEKQEAEAMKLAQDYPAVSPEELNKAPFPFLSFLSQSSGYLTHSPSLLFTP QKKEEK" gene complement(2713993..2714544) /gene="yfhC" /locus_tag="STM2568" /db_xref="GeneID:1254090" CDS complement(2713993..2714544) /gene="yfhC" /locus_tag="STM2568" /note="similar to E. coli putative deaminase (AAC75612.1); Blastp hit to AAC75612.1 (178 aa), 89% identity in aa 1 - 173" /codon_start=1 /transl_table=11 /product="tRNA adenosine(34) deaminase TadA" /protein_id="NP_461503.1" /db_xref="GI:16765888" /db_xref="GeneID:1254090" /translation="MPPAFITGVTSLSDVELDHEYWMRHALTLAKRAWDEREVPVGAV LVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDTTLYVTLEPCVMCA GAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHPGMNHRVEIIEGVLRDECATLLSDFF RMRRQEIKALKKADRAEGAGPAV" gene complement(2714569..2715216) /gene="yfhB" /locus_tag="STM2569" /db_xref="GeneID:1254091" CDS complement(2714569..2715204) /gene="yfhB" /locus_tag="STM2569" /note="similar to E. coli orf, hypothetical protein (AAC75613.1); Blastp hit to AAC75613.1 (190 aa), 91% identity in aa 1 - 190" /codon_start=1 /transl_table=11 /product="acid phosphatase AphA" /protein_id="NP_461504.1" /db_xref="GI:16765889" /db_xref="GeneID:1254091" /translation="MVSHERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNALLVLPL LPIIGIGLLVKGRAARWPMSLLLWGCTFGHSETRLQAHQADFVRWFRANVTAFPVVQE RLTTYLLSSDADIWLITGSPQSLVEQVYFDTPWLPRVNLIASQMARRYGGWVLTVRCL GHEKVAQLERKIGTPLRLYSGYSDSKQDNPLLYFCQHRWRVTPHGELQQLE" gene complement(2715208..2716578) /locus_tag="STM2570" /db_xref="GeneID:1254092" CDS complement(2715208..2716569) /locus_tag="STM2570" /EC_number="2.7.1.191" /note="similar to E. coli putative PTS enzyme II (AAC75482.1); Blastp hit to AAC75482.1 (474 aa), 38% identity in aa 6 - 467" /codon_start=1 /transl_table=11 /product="PTS sugar transporter subunit IIC" /protein_id="NP_461505.1" /db_xref="GI:16765890" /db_xref="GeneID:1254092" /translation="MDKTAALASDILRGIGGEQNILRLENCMTRVRVEVQDDSQLDIP RLKALPGVSGYVKQGEQHQLIVGPGKAAQVVDAMRVQIAAGGVKPDDAMARTKSEAKA KYKAPMSDALRKLANVFIPLIPAFIASGLITGIINILKRPDIVGDVAVHYPNLLGLMG IFGSAVFAIMNILVGVNTAKVFGGSQALGGVMAGILSSPQLAQITLFGEVLQPGRGGV IAVLLVVALMCWIERQFRKLLPGSLELILNPLLTTVITGAVAIVALQPLGGWISDAIA HGASWAIDRGGFLVGAVLAGTFLPLVLTGLHQGLVPIHVELVQAHGYNALFPILAMAG VGQIGAAIAVLMKTRNARLKKVIKGALPVGLLGIGEPLIFGVTLPLGKPFIGACLGGA VGGALISYWKVATVITFGISGLPLALTIVAGKVLFYLLGYLIAVIAGFIFTWLLGFND PEE" regulatory complement(2715211..2715216) /regulatory_class="ribosome_binding_site" /gene="yfhB" /locus_tag="STM2569" /note="putative RBS for yfhB; RegulonDB:STMS1H002668" regulatory complement(2716573..2716578) /regulatory_class="ribosome_binding_site" /locus_tag="STM2570" /note="putative RBS for STM2570; RegulonDB:STMS1H002669" gene complement(2716580..2717484) /locus_tag="STM2571" /db_xref="GeneID:1254093" CDS complement(2716580..2717473) /locus_tag="STM2571" /note="similar to E. coli putative regulator (AAC75481.1); Blastp hit to AAC75481.1 (298 aa), 54% identity in aa 1 - 296" /codon_start=1 /transl_table=11 /product="N-acetylmuramic acid 6-phosphate etherase" /protein_id="NP_461506.1" /db_xref="GI:16765891" /db_xref="GeneID:1254093" /translation="MNLGTLVSETRNPQTMDLDALPTPELVKRFNEQDTLVAEAVKAT LPDVARAVDAAAAALKSGGRIIYMGAGTSGRLGVLDASECPPTFGVPHGLVVGLIAGG PGALLKAVEGAEDSQQAGEDDLVALNLQEQDLVVGLAASGRTPYVIGGLRYARQSGCT TVAVSCNPDSPIAREANIAISPVVGPEALTGSTRLKSGTAQKMVLNMISTGAMVKFGK VYQNLMVDMKATNVKLVDRACRMVVEATGIGREEAEALLKQTDFEVKPAILMALTGLD AAAAREKLAAHQGFLRAALEH" regulatory complement(2717479..2717484) /regulatory_class="ribosome_binding_site" /locus_tag="STM2571" /note="putative RBS for STM2571; RegulonDB:STMS1H002670" gene 2717577..2718437 /gene="yfhH" /locus_tag="STM2572" /db_xref="GeneID:1254094" regulatory 2717577..2717582 /regulatory_class="ribosome_binding_site" /gene="yfhH" /locus_tag="STM2572" /note="putative RBS for yfhH; RegulonDB:STMS1H002671" CDS 2717589..2718437 /gene="yfhH" /locus_tag="STM2572" /note="membrane; similar to E. coli orf, hypothetical protein (AAC75614.1); Blastp hit to AAC75614.1 (306 aa), 83% identity in aa 25 - 306" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461507.1" /db_xref="GI:16765892" /db_xref="GeneID:1254094" /translation="MNCLIRIRQRYPDLAQSDRKLADYLLAQPDTARHLSSQQLAAEA GVSQSSVVKFAQKLGFKGFPALKLALSEALASNPNPHSVPVHNQIRGDDPMRLVGEKL IKENVAAMHATLDVNSEEKLLESVTMLRHARRIVITGIGASGLVAQNFAWKLLKIGIN AVVERDMHALLATVQALAPEDLLLAISYSGERRELNLAADETLRAGAKILAITGFSPN ALQQRATRCLYTIAEEQATRSAAISSTHAQMMLTDLLFMALVQQDLERAPERIRHSEA LVKKLV" gene complement(2718476..2719400) /locus_tag="STM2573" /db_xref="GeneID:1254095" CDS complement(2718476..2719393) /locus_tag="STM2573" /EC_number="1.1.1.169" /note="similar to E. coli involved in thiamin biosynthesis, alternative pyrimidine biosynthesis (AAC73528.1); Blastp hit to AAC73528.1 (303 aa), 26% identity in aa 1 - 291" /codon_start=1 /transl_table=11 /product="2-dehydropantoate 2-reductase" /protein_id="NP_461508.1" /db_xref="GI:16765893" /db_xref="GeneID:1254095" /translation="MKIAIAGAGAMGCRFGYMLLEAGHDVTLIDGWQEHVDAIRSKGL FVETETTQKYYPIPAMLADESQGEFELVILFTKAMQLDSMLQRIKPLLPAAKVVMILS NGLGNIETLEKYVDRQKIYAGVTLWSSELEGAGHIMATGTGTIELQPIASQDSAQEAK VIATLNSAGLNAEISPDVLLSIWKKAAFNSVMNTYCALLDCNVGGFGQRPGALDLAQA VVDEFVLVAASQNIPLTEQMVMNTVKKVFDPRESGHHYPSMHQDLHKGRLTEIDYLNG AIARIGAQNNIAVPVNKLLTQLIHAKEAQ" regulatory complement(2719395..2719400) /regulatory_class="ribosome_binding_site" /locus_tag="STM2573" /note="putative RBS for STM2573; RegulonDB:STMS1H002672" gene complement(2719415..2720622) /locus_tag="STM2574" /db_xref="GeneID:1254096" CDS complement(2719415..2720611) /locus_tag="STM2574" /note="similar to E. coli putative resistance protein (AAC76571.1); Blastp hit to AAC76571.1 (402 aa), 28% identity in aa 10 - 399" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_461509.1" /db_xref="GI:16765894" /db_xref="GeneID:1254096" /translation="MSASINRWGMLAAHVCINFVLGGVYAFSYFKTPLMAQYHWDPAT LALAFSINMGIIPLPMIWGGRMIDNGKGKQAIVIGGILFSLGFILSGFVDNLPMLFLT YGVIAGLGSGLAFTGNLNNILKFFPDRRGLASGIVLAGVGVGTLLCTRLAEYFMAQTH DVSRALLYLGIVYLVVIFIVQFFIRSAPAKDSGGIKASPLDKDYRHMLKDLRFWLLFM ILALGVFSGMVISSSSAQIGMTQYGLLSGALVVSLVSIFNSIGRLFWGGLTDKLGGYN TLVIVYLFTCVCMLLLLFFNGNTSVFYFSALGVGFAYAGILVIFPGLTSQNFGMRNQG LNYGFMYFGFAVGAVIAPYVTSAIAKYTGSYNTVFILTTVLLLIGVVLTLITKKYVAT VLAKIH" regulatory complement(2720617..2720622) /regulatory_class="ribosome_binding_site" /locus_tag="STM2574" /note="putative RBS for STM2574; RegulonDB:STMS1H002673" gene 2720727..2721653 /locus_tag="STM2575" /db_xref="GeneID:1254097" CDS 2720727..2721653 /locus_tag="STM2575" /note="similar to E. coli cyn operon positive regulator (AAC73441.1); Blastp hit to AAC73441.1 (299 aa), 30% identity in aa 4 - 229" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_461510.1" /db_xref="GI:16765895" /db_xref="GeneID:1254097" /translation="MNIKQLHSFLILCDELHYGRAASRLFITQPSLSQQIKQLESSLK TILFKRKGRGIKLTKAGIILQRHANKIMLDLKNAENELLPYQDQQRDTISIGVSGSYL VLPAFRNFMAHHPEISLNVKEFSTEQTIKKLTDSAVDIGIVYRTALPAQLSSTMLFED EIIAAIPLSHPLATRERLHLKDLNDQPIIVLNDSLLLRGIITTEFNNRKVVPNVICEL DNHYSCLEYAEAQIGIAFITRSLTHLSTPKNVRLVSLGIPAFFIPVMLVHSNDLSLDN ATICLLKQIKNFYTVDNKSAPEKSWPEQKIGV" gene 2721679..2721951 /gene="yfhL" /locus_tag="STM2576" /db_xref="GeneID:1254098" regulatory 2721679..2721684 /regulatory_class="ribosome_binding_site" /gene="yfhL" /locus_tag="STM2576" /note="putative RBS for yfhL; RegulonDB:STMS1H002674" CDS 2721691..2721951 /gene="yfhL" /locus_tag="STM2576" /note="similar to E. coli orf, hypothetical protein (AAC75615.1); Blastp hit to AAC75615.1 (86 aa), 94% identity in aa 1 - 86" /codon_start=1 /transl_table=11 /product="putative ferredoxin" /protein_id="NP_461511.1" /db_xref="GI:16765896" /db_xref="GeneID:1254098" /translation="MALLITKKCINCDMCEPECPNEAISMGDSIYEINSDKCTECVGH YETPTCQKVCPIPNTILQDPAHVESEEQLWDKFVLMHHADKL" gene complement(2722063..2722460) /gene="acpS" /locus_tag="STM2577" /db_xref="GeneID:1254099" CDS complement(2722063..2722443) /gene="acpS" /locus_tag="STM2577" /EC_number="2.7.8.7" /note="CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase, phosphopanthetheinyltransferase; similar to E. coli CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase (AAC75616.1); Blastp hit to AAC75616.1 (126 aa), 94% identity in aa 1 - 126" /codon_start=1 /transl_table=11 /product="holo-ACP synthase" /protein_id="NP_461512.1" /db_xref="GI:16765897" /db_xref="GeneID:1254099" /translation="MAILGLGTDIVEIARIEAVISRSGERLARRVLSDNEWAIWETHQ QPVRFLAKRFAVKEAAAKAFGTGIRNGLAFNQFEVFNDELGKPRLRLWGEALTLAEKL GVAHMHVTLADERHYACATVILES" gene complement(2722443..2723184) /gene="pdxJ" /locus_tag="STM2578" /db_xref="GeneID:1254100" CDS complement(2722443..2723174) /gene="pdxJ" /locus_tag="STM2578" /note="similar to E. coli pyridoxine biosynthesis (AAC75617.1); Blastp hit to AAC75617.1 (243 aa), 93% identity in aa 1 - 243" /codon_start=1 /transl_table=11 /product="pyridoxine 5'-phosphate synthase" /protein_id="NP_461513.1" /db_xref="GI:16765898" /db_xref="GeneID:1254100" /translation="MAELLLGVNIDHIATLRNARGTDYPDPVQAAFIAEQAGADGITV HLREDRRHITDRDVRILRQTLHTRMNLEMAVTEEMLAIAVETRPHFCCLVPEKRQEVT TEGGLDVAGQRDKMRDACARLAAAGIQVSLFIDADETQINAAAEVGAPFIEIHTGCYA NAETDAEQAKELARIASAATLAARLGLKVNAGHGLTYHNVKAIAALPEMHELNIGHAI IGRAVMTGLKEAVAEMKRLMLEARG" regulatory complement(2722455..2722460) /regulatory_class="ribosome_binding_site" /gene="acpS" /locus_tag="STM2577" /note="putative RBS for acpS; RegulonDB:STMS1H002675" regulatory complement(2723179..2723184) /regulatory_class="ribosome_binding_site" /gene="pdxJ" /locus_tag="STM2578" /note="putative RBS for pdxJ; RegulonDB:STMS1H002676" gene complement(2723186..2723914) /gene="recO" /locus_tag="STM2579" /db_xref="GeneID:1254101" CDS complement(2723186..2723914) /gene="recO" /locus_tag="STM2579" /note="DNA repair protein RECO (recombination protein O). (SW:RECO_SALTY)" /codon_start=1 /transl_table=11 /product="DNA repair protein RecO" /protein_id="NP_461514.1" /db_xref="GI:16765899" /db_xref="GeneID:1254101" /translation="MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRS NLKGALQPFTPLLLRYSGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVLEY ETRFSELFFDYLNCIQALAGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDD TMTYRYREEKGFFASVVIDNNTFTGRHLKALEAREFPDVDTLRAAKRFTRMALKPYLG GKPLKSRELFRQFMPKRTVKTKKD" gene complement(2723926..2724842) /gene="era" /locus_tag="STM2580" /db_xref="GeneID:1254102" CDS complement(2723926..2724831) /gene="era" /locus_tag="STM2580" /note="believed to be involved in coordination of cell cycle, energy metabolism, cell division; GTP-binding protein ERA. (SW:ERA_SALTY)" /codon_start=1 /transl_table=11 /product="GTPase Era" /protein_id="NP_461515.1" /db_xref="GI:16765900" /db_xref="GeneID:1254102" /translation="MSTDKTYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR HRIVGIHTEGPYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT PDDEMVLNKLRDGKAPVILAVNKVDNVQEKVDLLPHLQFLASQMNFLDIVPISAETGM NVDTIAGIVRKHLPEAIHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEI ERFVTNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLE LWVKVKSGWADDERALRSLGYVDDL" gene complement(2724828..2725518) /gene="rnc" /locus_tag="STM2581" /db_xref="GeneID:1254103" CDS complement(2724828..2725508) /gene="rnc" /locus_tag="STM2581" /EC_number="3.1.26.3" /note="ribonuclease III. (SW:RNC_SALTY)" /codon_start=1 /transl_table=11 /product="ribonuclease III" /protein_id="NP_461516.1" /db_xref="GI:16765901" /db_xref="GeneID:1254103" /translation="MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLG DSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELK SGGFRRESILADTVEALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRL QEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQ ALKKLELE" regulatory complement(2724837..2724842) /regulatory_class="ribosome_binding_site" /gene="rnc" /locus_tag="STM2581" /note="putative RBS for era; RegulonDB:STMS1H002677" regulatory complement(2725513..2725518) /regulatory_class="ribosome_binding_site" /gene="rnc" /locus_tag="STM2581" /note="putative RBS for rnc; RegulonDB:STMS1H002678" gene complement(2725782..2726767) /gene="lepB" /locus_tag="STM2582" /db_xref="GeneID:1254104" CDS complement(2725782..2726756) /gene="lepB" /locus_tag="STM2582" /EC_number="3.4.21.89" /note="signal peptidase I. (SW:LEP_SALTY)" /codon_start=1 /transl_table=11 /product="S26 family signal peptidase" /protein_id="NP_461517.1" /db_xref="GI:16765902" /db_xref="GeneID:1254104" /translation="MANMFALILVIATLVTGILWCVDKFVFAPKRRARQAAAQTASGD ALDNATLNKVAPKPGWLETGASVFPVLAIVLIVRSFLYEPFQIPSGSMMPTLLIGDFI LVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKITYDP VAKEVTIQPGCSSGQACENALPVTYSNVEPSDFVQTFARRNGGEATSGFFEVPLNETK ENGIRLTERKETLGDVTHRILMVPIAQDQLGMYYQQPGQPLATWVVPPGQYFMMGDNR DNSADSRYWGFVPEANLVGKAVAIWMSFDKQEGEWPTGVRLSRIGGIH" regulatory complement(2726762..2726767) /regulatory_class="ribosome_binding_site" /gene="lepB" /locus_tag="STM2582" /note="putative RBS for lepB; RegulonDB:STMS1H002679" gene complement(2726773..2728572) /gene="lepA" /locus_tag="STM2583" /db_xref="GeneID:1254105" CDS complement(2726773..2728572) /gene="lepA" /locus_tag="STM2583" /note="similar to E. coli GTP-binding elongation factor, may be inner membrane protein (AAC75622.1); Blastp hit to AAC75622.1 (599 aa), 96% identity in aa 1 - 599" /codon_start=1 /transl_table=11 /product="elongation factor 4" /protein_id="NP_461518.1" /db_xref="GI:16765903" /db_xref="GeneID:1254105" /translation="MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSM DLERERGITIKAQSVTLDFKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVV DAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR CSAKTGVGVTDVLERLVRDIPPPQGDPDGPLQALIIDSWFDNYLGVVSLVRIKNGTMR KGDKIKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDILGAPVGDTLTS ARNPAEKALPGFKKVKPQVYAGLFPVSSDDYESFRDALGKLSLNDASLFYEPESSSAL GFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTAKETIYVDSPSKLPP LNNIYELREPIAECHMLLPQAYLGNVITLCIEKRGVQTNMVYHGNQVALTYEIPMAEV VLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINNERVDALALITHRDNSQSRG RELVEKMKDLIPRQQFDIAIQAAIGTHIIARSTVKQLRKNVLAKCYGGDISRKKKLLQ KQKEGKKRMKQIGNVELPQEAFLAILHVGKDNK" gene 2728973..2730470 /gene="gogB" /locus_tag="STM2584" /db_xref="GeneID:1254106" regulatory 2728973..2728978 /regulatory_class="ribosome_binding_site" /gene="gogB" /locus_tag="STM2584" /note="putative RBS for gogB; RegulonDB:STMS1H002680" CDS 2728977..2730470 /gene="gogB" /locus_tag="STM2584" /codon_start=1 /transl_table=11 /product="type III secretion system protein" /protein_id="NP_461519.1" /db_xref="GI:16765904" /db_xref="GeneID:1254106" /translation="MTYRLKKRMKIGFQPAILQYAYTSNEATSNLELLNKWRIESPDI EKEERNSIYDKIIEANHTGSLSITAHHVTSIPVFPDNLSELNLSSCYTLESIPNLPDG LKSLTISGNQTIKISYFPDSLESLSIDMQAYEENYTFPALPYGLKSFTACYGKFLPPL PPHLSSLSLQNFSEILCAELPYKLDKLDLQNCPFLPLMKMLPEELKELSIELIRTVPG TVIDDILPDKLKKLSINFCDNIKLPVKLPVNLKSINLSSRTPIAWEIPTCNLPAHIDI STDGYVKLNPEFLTRSDITFSNKPAGDVLSFQPGDVVYGLCKARDRVNTLVNSLYYFS KKDIIIQNTLTDAVWDRKNRAVFNKDEKIAERLNDVQRGIFFREFLSQHKKYNITEDK YSDLSNEECWIKTSKAGLEFQTRLRERSVIFVIDNLVDAISDIANKTGKHGNSITAHE LRWVYRNRHDDLVKQNVKFFLNGEAISHEDVFSLVGWDKYKPKNRNR" gene 2731352..2731902 /locus_tag="STM2585" /db_xref="GeneID:1254107" regulatory 2731352..2731357 /regulatory_class="ribosome_binding_site" /locus_tag="STM2585" /note="putative RBS for STM2585; RegulonDB:STMS1H002681" CDS 2731357..2731902 /locus_tag="STM2585" /note="similar to transposase" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461520.1" /db_xref="GI:16765905" /db_xref="GeneID:1254107" /translation="MMRFVYIYILVIYGSYLWFSLGGNMFTINSTNRVASTIAPYACV SDVNLEDKATFLDEHTSIHANDSSLQCFVLNDQHVPQNTLATDVEGYNRGLQERISLE YQPLESIVFLLGTPAVLETKESLSLPVSPDALTQKLLSISSNDECKLSGSTSCTTPAS HNPPSGYIAQYRHSAEVFPDE" gene 2733014..2733241 /locus_tag="STM2585A" /db_xref="GeneID:1254108" CDS 2733014..2733241 /locus_tag="STM2585A" /note="homolog of pagK" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461521.1" /db_xref="GI:16765906" /db_xref="GeneID:1254108" /translation="MPKFNRQRIIKHVKSVFLAMILILPSSLYSALTIAADSQDHKKE ETIKPMPQKWCNLWPAGIPFPEDWFKMCRGY" gene complement(2733338..2733923) /locus_tag="STM2586" /db_xref="GeneID:1254109" CDS complement(2733338..2733916) /locus_tag="STM2586" /note="similar to phage tail assembly protein; phage tail assembly protein (gi|2460256)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461522.1" /db_xref="GI:16765907" /db_xref="GeneID:1254109" /translation="MTFKMSDTPQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTD IAPPDIPASHIAIFDAETGTWSLHEDHRGETVYDTTTGNQVYISAPGPLPENVTSVSP DGEYQKWDGKAWVKDEAAETAARLREAEGTKSRLLQMASEKIAPLQDAVDLDEATDKE KASLLAWRKYRVQVNRVDTLKPVWPEKPASSL" gene complement(2733906..2734735) /locus_tag="STM2587" /db_xref="GeneID:1254110" CDS complement(2733906..2734730) /locus_tag="STM2587" /note="similar to phage tail assembly protein; phage tail assembly protein (gi|2460256)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461523.1" /db_xref="GI:16765908" /db_xref="GeneID:1254110" /translation="MIKLILSAPVPAMAVAFEHSFQNTENVEIIPGPFETIPEFDCMV SAANSFGLMDGGVDAAITAYFGPQLQERVQQHILREYLGEQPVGTAFVIETGNSKYPW LVHAPTMRVPLIIDGTDAVYNATRAALLAIFQHNKSAGEDRKIKSVVFPAMGAGCGQV SPGSVARQMKLAWDGFINCTTEINWQYASARQNAVFSTTAYCPSKALCPNARTEYIGF GDYRTYCKKSGNTCISPRHQVDDIYIGAHSHAVFLSPNSHGKHLKPEYLSGVKNDV" regulatory complement(2733918..2733923) /regulatory_class="ribosome_binding_site" /locus_tag="STM2586" /note="putative RBS for STM2586; RegulonDB:STMS1H002682" gene complement(2734727..2737105) /locus_tag="STM2588" /db_xref="GeneID:1254111" CDS complement(2734727..2737099) /locus_tag="STM2588" /note="similar to tail fiber-like protein; similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 49% identity in aa 3 - 515, 56% identity in aa 878 - 1084, 42% identity in aa 1008 - 1122, 33% identity in aa 354 - 568, 26-1073758628dentity in aa 116 - 345, 26% identity in aa 961 - 1111, 26-1073758654dentity in aa 940 - 1106, 25% identity in aa 766 - 828, 26% identity in aa 778 - 841" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461524.1" /db_xref="GI:16765909" /db_xref="GeneID:1254111" /translation="MPVLISGVLKDGTGTPVQNCTIQLKACRTSTTVVVNTVASENPD DAGRYSMDVEQGQYTVTLLVEGYPPSHAGVITVYDDSKPGTLNDFLGAMTEDDVRPEA LRRFEAMVEEVARQASEASRNATAAGQASEQAQTSAGQAAESATAAVNAAGAAEASAT QAASSAASAESSAGTATTKAGEASASAASADTARTAAAASAAAAKTSEANADVSRTAA GDSAAAAAASATAAQTSAARAGASETAAKTSETQAASSAGDAGASATAAAASEKAAAA SAAAAKISETNAATSASTAAASATAASSSASEASNHAAASDTSASLAAQSSTAAGAAA TRAEDAAKRAEDIADVISLEDASLTKKGIVKLSSATDSDSEALAATPKAVHAVMDEVQ TKAPLDSPVFTGTPTTPTPPDDAKGLQTANAEFVRKLIAALVGSVPESLDTLQELADA LGNDPNFATTITNMIAGKQPLDDTLTALSGKSIEGLIEYVGLRSTIDKAAGALPAGGT AVAANRLASRGALPALTGTTRGSDGGLIMGEVYNNGYPTQYGNILRLTGTGDGEILIG WSGTNGAPAPAYIRSHRDTADAEWSEWAMLYTTLNPPPDSHPVGAAIAWPSDATPAGY ALMQGQSFDKSAYPLLAIAYPSGVIPDMRGWTIKGKPISGRAVLSQEMDGNKSHSHTA RAQDTDLGTKSTSSFDYGTKSTNTTGNHTHQFGGYINSYWGDSNHTSFQPGGGAWTQA AGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAETTVKNIAFNYIVRLA" regulatory complement(2734730..2734735) /regulatory_class="ribosome_binding_site" /locus_tag="STM2587" /note="putative RBS for STM2587; RegulonDB:STMS1H002683" regulatory complement(2737100..2737105) /regulatory_class="ribosome_binding_site" /locus_tag="STM2588" /note="putative RBS for STM2588; RegulonDB:STMS1H002684" gene complement(2737434..2740796) /locus_tag="STM2589" /db_xref="GeneID:1254112" CDS complement(2737434..2740796) /locus_tag="STM2589" /note="similar to host specificity protein-J in phage lambda" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461525.2" /db_xref="GI:1109557703" /db_xref="GeneID:1254112" /translation="MGKGGGKGHTPREAPDNLKSTQLLSVIDAISEGPIEGPVNGLQS VLVNQTPVVDRDGNTNIHGVKVVYRVGEQEQTPLEGFESSGAETVLGVQVKYDNPVTR TITAANIDRLRFTFGVQSLVEANSKGDRNPTSVRLQIHLERYGQWVVEKEITITGKTT TQYLASVIVDNLPPRPFGIRMVRVTADSTTDQLQNNTVWSSYTEIIDVRQRYPNTAVI GLQVESEQFGSQQVTRNYHFFGRIIHVPSNYDPVARTYSGIWDGTFKPAYSNNPAWCL WDVLTHPRYGMGQRIGAADVDRWALYAIGQYCDQMVPDGFGGTEPRMTFNAYLAQQRK AWDVLTDFCSAMRCMPVWNGQMMTFVQDRPSDTVWTYTRSNVVMPDEGTPFRYSFSAR KDRHNAVEVNWIDPDNGWQTSTELVEDTVAISHYGRNLVKMDAFGCTSRGQAHRAGLW LIKTELLETQTVDFSVGAEGLRHVPGDVIEVCDEDYAGISLGGRILSVDRARRILTLD REITLPSSGTTLISLMDGEGLPVSVDVQSVTDGVQVQVSRIPDGVAEYSVWGLKLPSL RQRLFRCVAVRENDDGTYAITAVQHVPEKESIVDNGASFDPQPGTIHGTVPPAIQHLT TEILAEEGQYQVLARWDTPRVVKGASFSLRLNVAAEDGSDRLVSSAGTPDTQYRFRGL TPGRYTLSVRAVNSQGQQGDPASTQFSISAPAAPSFIELTPGYFQITATPRQAVYDPT VQYEFWFSDAQITDIHQVENAARYLGTALYWIAASVNIRPGRDYYFYIRAVNQVGKSA FVEATGQASNDAAGYLDFFKGQITESHLGKELLEKVELTEDNASKLQQFSKEWQDAND KWNAMWGVKIEQTKDGKYYVAGLGLSMEDMPDGKISQFLVAADRIAYINPANGNETPG FVMQGDQIIMNEAFLKYLSAPTITSGGNPPAFSLTPDGKLTAKNADISGHINAVSGSF TGEINATSGKFSGVIEAREFVGDICGSKVMQGVSIRETNDERSTSTRYTDSATYQIGK TITVMANCERNGGSGAITVTININGQVKTAEVIPYTAGLPAMYQTVVFSVYTTSPVVD ISVSLRVRGQYTTSASVWPLVMVSRSGNNFTN" regulatory complement(2740796..2740801) /regulatory_class="ribosome_binding_site" /note="putative RBS for STM2589; RegulonDB:STMS1H002685" gene complement(2740858..2741511) /locus_tag="STM2590" /db_xref="GeneID:1254113" CDS complement(2740858..2741505) /locus_tag="STM2590" /note="similar to tail assembly protein I in phage lambda" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461526.1" /db_xref="GI:16765911" /db_xref="GeneID:1254113" /translation="MATTHALHLATPGMARICLYGDLQRFCRRVSLQVASGAEAVRAL AVQLPGLRQKLNDGWYQVRIAGDDVTADTLTTSLHDPLPPGAVIHIVPRLGGAKSGGV FQAVLGAALIAVAWWNPAGWLGAAAVSGMYMTGASMVLGGVAQMLAPKPKMSEMRQTD NGRQNTYFSSLDNMVANGNTLPVLYGEMQVGSRVISQEVSTADEGDGGQVVVIGR" gene complement(2741403..2742009) /locus_tag="STM2591" /db_xref="GeneID:1254114" CDS complement(2741403..2742002) /locus_tag="STM2591" /note="similar to tail assembly protein K in phage lambda" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461527.1" /db_xref="GI:16765912" /db_xref="GeneID:1254114" /translation="MAPEDWLRAETQGDIVALVHSHPGGQPYLSDVDRRLQVQSDLPW WLVCAGQVHKFRCVPHLTGRHYKHGVFDCYTLFRDAYHLAGIDMPDFHRDDDWWRHGD NLYLDNLETTGFYRVSAASAQPGDVLICCFGSSVPNHAAIYCGDGELLHHIPEQLSKR ERYTDKWQRRTHSIWRHRAWRASAFTGICNDFAAASACR" regulatory complement(2741506..2741511) /regulatory_class="ribosome_binding_site" /locus_tag="STM2591" /note="putative RBS for STM2590; RegulonDB:STMS1H002686" regulatory complement(2742004..2742009) /regulatory_class="ribosome_binding_site" /locus_tag="STM2591" /note="putative RBS for STM2591; RegulonDB:STMS1H002687" gene complement(2742147..2742853) /locus_tag="STM2592" /db_xref="GeneID:1254115" CDS complement(2742147..2742845) /locus_tag="STM2592" /note="similar to phage tail component L" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461528.1" /db_xref="GI:16765913" /db_xref="GeneID:1254115" /translation="MQDISQDTLNESAKLAQSARITLWEIDLTQSGGDRYFFCNEANE KGEAVTWQGRKYDVYPVDGCGFEMNGKGAAARPSLKVSNLYGMVTGMVEDLHSLVGAT VIRRIVYARFLDAVNFQNGNQEADPEQESVSRWVIEQCSDLTAVSATFVLATPTETDG CVFPGRIMLANTCTWIYRSDECGYTGPAVADEFDNPTADPAKDACSRCARGCALRNNT GNFGGFLSINKLSQ" regulatory complement(2742848..2742853) /regulatory_class="ribosome_binding_site" /locus_tag="STM2592" /note="putative RBS for STM2592; RegulonDB:STMS1H002689" gene complement(2742855..2743192) /locus_tag="STM2593" /db_xref="GeneID:1254116" CDS complement(2742855..2743184) /locus_tag="STM2593" /note="similar to phage tail component M; lambda phage M tail component homolog (gi|2232363)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461529.1" /db_xref="GI:16765914" /db_xref="GeneID:1254116" /translation="METFNWKIRPDMTVESEPKVTSIKLGDGYEQRRPAGLNNHLAKY NVTVRIRKGEHQNLEAFLSRHGGVKSFLWTPPYTWTQIRVICRKWSINVGSLWVTVTT TFEQVVI" gene complement(2743187..2746289) /locus_tag="STM2594" /db_xref="GeneID:1254117" CDS complement(2743187..2746282) /locus_tag="STM2594" /note="similar to phage tail component H; lambda phage H tail component homolog (gi|2232364)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461530.1" /db_xref="GI:16765915" /db_xref="GeneID:1254117" /translation="MDQIANLVIDLSIDSAEFRNEVPRIKKLLNDAAGDSERSAARMQ RFLDKQTEATRRTSASLEQVTASSTAYSSAVEKSAAASTRLAADVDQTRQRVEALGRK LREEQAQSAAVAAAQDRTSAAFYRQIDSVKQLSGGLQELQRIQAQVRQAKGRGDISQG DYLALVSETARKTRELTDAEALATQKKAQFIRRLKEQTTVQGLSRTELLRVKAAELGV SSAADIYIRKLERTGTATHTLGLKSAAARRELGVLAGELARGNFGALRGSGITLANRA GWIEQLMSPKGMMLGGLAGGVAAAVYGLGKAYYEGAKESETFNKQLILTGSYAGKTTG QLNAMAKSLAGNGVTQHDAAGVLAQVVGSGAFTGQAMAMVSRTATRMQENVGQSVDET IRQFKRLRDDPVNAAKELDRTLHFLTATQLEQIRVLGEQGRVADAAKIAMSAYSEEMN KRMGDVHDNLGWIERAWNAVGDAAKWAWDRMLDIGREDTLDEKIATLQEKIARDRKTP WTVSSSQTEYDQQQLNELQEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNET ESLRHQREVARITAMQYADAAVRNAALERENERHKKALSQQAKKPKTYHNDEARRLLL QYSQQQAQTEGQITAAKLSTTEKMTEAHKQLLSFQQRIADLSGKKLTADEQSVLAHKD EIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADEESRVRQQHAMALATMGMGD QQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAEWAD YNAKVDAAQGDWTLGASRALDNFLAQGGNVAGMTENVFTNAFNGMADSIANFAVTGKG SFRSLTVSILADLAKMEARIAASKLLGSVLAMFGFGTSAGGSTPSGAYSSAALSVIPN ADGGVYRSAGLSQYSGSIVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVAA GSGGMAMFAPEYNIEIHNDAGNGQIGPQALQAVYNIGKKAAIDFWQQQSRDGGIAGGG R" regulatory complement(2743187..2743192) /regulatory_class="ribosome_binding_site" /locus_tag="STM2593" /note="putative RBS for STM2593; RegulonDB:STMS1H002690" gene complement(2746254..2746598) /locus_tag="STM2595" /db_xref="GeneID:1254118" CDS complement(2746254..2746592) /locus_tag="STM2595" /note="similar to minor tail protein" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461531.1" /db_xref="GI:16765916" /db_xref="GeneID:1254118" /translation="MNRELAFVMRLAREFRRPDWRQMLAEMSATELGEWAEHFGKNSF SDMLLDAEFATLKSLISGLVTGTHHDAEMFSLITDPESLHEKTDDELMILGEGITGGV RYGPDSEPGH" regulatory complement(2746284..2746289) /regulatory_class="ribosome_binding_site" /locus_tag="STM2595" /note="putative RBS for STM2594; RegulonDB:STMS1H002691" gene complement(2746589..2746990) /locus_tag="STM2596" /db_xref="GeneID:1254119" CDS complement(2746589..2746984) /locus_tag="STM2596" /note="similar to minor tail protein" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461532.1" /db_xref="GI:16765917" /db_xref="GeneID:1254119" /translation="MFLNTDTFNYGGHSIVLSELSALQRVDYLKFIQQRTADYDAQPE TLTEAERQTEFMQMGVDINAWLVSRSLCESKKEEEARALYESVRLEWSYEALGRGADM VLSLSGMRLPASQEDDSGSEKDTTTPEKS" regulatory complement(2746593..2746598) /regulatory_class="ribosome_binding_site" /locus_tag="STM2595" /note="putative RBS for STM2595; RegulonDB:STMS1H002692" regulatory complement(2746985..2746990) /regulatory_class="ribosome_binding_site" /locus_tag="STM2596" /note="putative RBS for STM2596; RegulonDB:STMS1H002693" gene complement(2747035..2747789) /locus_tag="STM2597" /db_xref="GeneID:1254120" CDS complement(2747035..2747781) /locus_tag="STM2597" /note="similar to major tail protein" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461533.1" /db_xref="GI:16765918" /db_xref="GeneID:1254120" /translation="MMGTPNPLVKTKGAGTTFWLYTGSGDAFKNPLADDDWLRLAGIK DLQPGEMSADAEDDDYLDDENADWKSTTQGQKSVGDTTATLAWKPGETGQKKLVELFD TGEVRAFRIRYPNGTVDVFRGWLSSLGKTVTSKEVMTRSVKITGVGRPSLAEEDTPDV VSVSGVTVAPASATVAAGATTTLTFTVKPDNASDKTLQVATADPLIATVTLKDNVATV KGVKAGSVNIVGISSDGSLVAVAAVTVTAS" regulatory complement(2747784..2747789) /regulatory_class="ribosome_binding_site" /locus_tag="STM2597" /note="putative RBS for STM2597; RegulonDB:STMS1H002694" gene complement(2747789..2748197) /locus_tag="STM2598" /db_xref="GeneID:1254121" CDS complement(2747789..2748190) /locus_tag="STM2598" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461534.1" /db_xref="GI:16765919" /db_xref="GeneID:1254121" /translation="MSKHTLIRRAVLEKLESVTGAPVTLFDGLPAFVEQEDLPAIAVW LTDAQYTGLMTDEDDWQATLHTAVFLRAQAPDTELDIWMEEKIFPALEEVSGLERLID TMTPLGYDYQRDSEMATWGMAEITYRITYTN" gene 2748167..2749429 /locus_tag="STM2599" /db_xref="GeneID:1254122" regulatory 2748167..2748172 /regulatory_class="ribosome_binding_site" /locus_tag="STM2599" /note="putative RBS for STM2599; RegulonDB:STMS1H002696" CDS 2748179..2749429 /locus_tag="STM2599" /note="similar to E. coli putative virulence protein (AAC74514.1); Blastp hit to AAC74514.1 (402 aa), 36% identity in aa 1 - 384" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461535.1" /db_xref="GI:16765920" /db_xref="GeneID:1254122" /translation="MFAHQNASFPPRPEGRGGKEAVFRLTVFCIITFSSLICEAMKRA YKYRFYPTTEQAELLAQTFGCVRFVYNSILRWRTDAYYERKEKIGYLQANARLTALKK EPEFAWLNDVSCVPLQQSLRHQQTAFANFFAGRAAYPAFKSKRHKQAAEFTASAFKYR DGKLYMAKNKIPLDVRWSRPLPSVPSTVTISKDAAGRYFVSCLCEFEPASLPITSSMV GIDVGLKDLFVTDTGFRSGNPRHTAKYAARLALLQRRLSKKAKGSKNRAKAHLKVARL HAKIADCRLDALHKATRKLINDNQVVCVESLKVRNMIRNPSLSKAIADASWGELVRQL RYKGEWAGRSVVAIDQFFPSSKRCSCCGFIMKKMPLDVRKWQCPECGTDHDRDVNAAR NIKAAGLAVLAHGEPVNPESLKAA" regulatory complement(2748192..2748197) /regulatory_class="ribosome_binding_site" /locus_tag="STM2598" /note="putative RBS for STM2598; RegulonDB:STMS1H002695" gene complement(2749478..2750063) /locus_tag="STM2600" /db_xref="GeneID:1254123" CDS complement(2749478..2750056) /locus_tag="STM2600" /note="similar to minor tail protein Z" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461536.1" /db_xref="GI:16765921" /db_xref="GeneID:1254123" /translation="MKGLENAIRNLNSLDRQMVPRASIWAVNRVAQKAVSVATRKVAR ETVAGDNQVRGLPLKLVRQRVRLFKAGTDGKRSARIRINRGNLPAIKLGAAQVRMSKR RGKLLYRGSVLKIGPYLFRDAFIQQLANGRWHVMRRVNGKNRYPIDVVKIPLSGPLTQ AFESATQSLIDEEIPKQLGYALKQQLRLYLSR" regulatory complement(2750058..2750063) /regulatory_class="ribosome_binding_site" /locus_tag="STM2600" /note="putative RBS for STM2600; RegulonDB:STMS1H002697" gene complement(2750084..2750472) /locus_tag="STM2601" /db_xref="GeneID:1254124" CDS complement(2750084..2750467) /locus_tag="STM2601" /note="similar to minor capsid protein FII of phage N15" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461537.1" /db_xref="GI:16765922" /db_xref="GeneID:1254124" /translation="MSQSENLFDTAISQADDAILRVMGTVATITSGVLAGATLTGVFD DPESVSYAAGGVRIEGDKPTFFVKTSLTVHLKRPDTLTILGDTFWVDRITPAGGDSSI ILLGRGTPPTDNRRRTGGMFDCSPA" regulatory complement(2750467..2750472) /regulatory_class="ribosome_binding_site" /locus_tag="STM2601" /note="putative RBS for STM2601; RegulonDB:STMS1H002698" gene complement(2750478..2750844) /locus_tag="STM2602" /db_xref="GeneID:1254125" CDS complement(2750478..2750837) /locus_tag="STM2602" /note="similar to DNA packaging protein gp9 of phage N14" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461538.1" /db_xref="GI:16765923" /db_xref="GeneID:1254125" /translation="MATKEENIQRLRELATRLGRDPDVSGSAAELSQRVMEWEEEAEA EHLPAVENDSDESIVPPGIGQRSERVLIRALRTLHICAIDPDSNRELDMVMAGNPARI SQHDVDELIAAGLIIEL" regulatory complement(2750839..2750844) /regulatory_class="ribosome_binding_site" /locus_tag="STM2602" /note="putative RBS for STM2602; RegulonDB:STMS1H002699" gene complement(2750895..2751930) /locus_tag="STM2603" /db_xref="GeneID:1254126" CDS complement(2750895..2751923) /locus_tag="STM2603" /note="similar to head protein gp7 of phage 21" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461539.1" /db_xref="GI:16765924" /db_xref="GeneID:1254126" /translation="MGLFTTRQLLGYTEQKVKFNPLFLSLFFRRTVTFPTQEVMLDKI TGKTPIAAYVSPVVGGKVLRNRGGETRVLRPGYVKPKHEVNYAQVVERLPGEDPARLN DPAYRRLRILTDNLKQEEKAIVQVEEMQAVSAVLNGKYTMQGEQFDTVEVDFGRSAGN NIIQATGKKWSEQDRETFDPTYDLDMYCDQASGLINIAVMDGKVWRLLNGFKLFREKL DTRRGSNSQLETAVKDLGAVVSFKGYYGDLAIVVAKTSYVADNGTEKRYLPEGTLVLG NTAAEGIRCYGAIQDSQALAEGIVAATRYPKHWLTVGDPANEYTMTQSAPLMVLPDPD EFVIVTVG" regulatory complement(2751925..2751930) /regulatory_class="ribosome_binding_site" /locus_tag="STM2603" /note="putative RBS for STM2603; RegulonDB:STMS1H002700" gene complement(2751978..2752332) /locus_tag="STM2604" /db_xref="GeneID:1254127" CDS complement(2751978..2752325) /locus_tag="STM2604" /note="similar to head protein gpshp of phage 21" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461540.1" /db_xref="GI:16765925" /db_xref="GeneID:1254127" /translation="MSFTTTIEKRADNRIFAGNDPAHTATGVSGITAATPMLTPLMLD DTTGKLVAWDGQKAGTAVGVLALELDGSENLLTYWKSGTFATESLAWPKSVDAIKQAN AFAGSAVSHAALP" regulatory complement(2752327..2752332) /regulatory_class="ribosome_binding_site" /locus_tag="STM2604" /note="putative RBS for STM2604; RegulonDB:STMS1H002701" gene complement(2752338..2753842) /locus_tag="STM2605" /db_xref="GeneID:1254128" CDS complement(2752338..2753834) /locus_tag="STM2605" /note="similar to head-tail preconnector gp5 of phage 21; similar to E. coli putative protease (AAC74354.1); Blastp hit to AAC74354.1 (349 aa), 27% identity in aa 124 - 300" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461541.1" /db_xref="GI:16765926" /db_xref="GeneID:1254128" /translation="MQRNLSHIISQATSAPLLLEPAYARVFFCALGRESGINSLHIPG NNESLDQSDMALVTGDFMATGKPQARFYQVVNGIAVLPVTGTLVHKLGGMRPFSGMTG YDGVTARLQQAVSDPEVKGILLDIDSPGGQAAGAFDCADMIYRMREQKPVWALANETA CSAAMLLAAACSHRLVTQTSRMGSIGVVMAHTSYAEKLKQEGIDITLIYSGAHKADLT PSQKLPESVYADYQQRMDEARKMFAEKVARYTGLSVDAVMATEAAVYDGQAIITTGLA DGMVNAADAIGVMAEAINSNKTGGTMPELSAADAVTQENQRVMGILGCPEARGHEALA QMLAGQPGMSVAQAKSILAAAAPADTTSTADRILALEEAGGRETLAQTLAAMPEMTVE QARTILAASPIAAATSLHDAVMALDEAKGREELAEKLAVMPGMTTDQARDLLAAAPDK SGNAGLSMNNAFDAFMQSHSPGPISGGKGHSNDTETTLLMSIPGTSAT" gene complement(2753824..2755410) /locus_tag="STM2606" /db_xref="GeneID:1254129" CDS complement(2753824..2755404) /locus_tag="STM2606" /note="similar to head-tail preconnector gp4 of phage 21" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461542.1" /db_xref="GI:16765927" /db_xref="GeneID:1254129" /translation="MKRTPVLVDVHGTPLRESLGYTGGGIGFGGQMADWMPPAESVDA ALLPSLRLGNARADDLVRNNGIAANAVALHKDHIVGHLFLISYRPNWRYLGMRESAAK SFVDEVEAAWTEYCDGIFGEMDAEGKRTFTEFIREGVGVHAFNGEIFLQPVWDAETTQ VFRTRFKAVSPKRVDTPGYARGNRQLRAGVETDRNGKALAYHVCDDDWPVAGGERWTR IPRFLPSGRPAMLHIFEPVEDGQTRGANQFYSVMERLKMLDTLQATQLQSAIVKAMYA ATIESELDSEKAFEYITAADNKDTPLVNMLANYARYYSTNSIKLGGVKIPHLYPGDEL NLQTAQDSDNGFSALEQALLRYIAAGLGVSYEQLSRDYSQVSYSSARASANESWRYFL GRRRFIAGRLATQMFSCWLEEALIRGVIRAPRARFSFWEARSSWSRSEWIGAGRMAID GLKEVQESVMRIEAGLSTYEKELAIMGEDYQEIFRQQVRESEERRAAGLSRPVWITDT YQQQIAASRQTEEEKRAT" regulatory complement(2753837..2753842) /regulatory_class="ribosome_binding_site" /locus_tag="STM2605" /note="putative RBS for STM2605; RegulonDB:STMS1H002702" gene complement(2755401..2755612) /locus_tag="STM2607" /db_xref="GeneID:1254130" CDS complement(2755401..2755604) /locus_tag="STM2607" /note="similar to head to tail joining protein" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461543.1" /db_xref="GI:16765928" /db_xref="GeneID:1254130" /translation="MATITELQEARVALHDLMTGKRVATVQKDGRRVEFTATSVGDLK KYVAELEASLCNGRRRAPVGVRL" regulatory complement(2755405..2755410) /regulatory_class="ribosome_binding_site" /locus_tag="STM2607" /note="putative RBS for STM2606; RegulonDB:STMS1H002703" gene complement(2755588..2757526) /locus_tag="STM2608" /db_xref="GeneID:1254131" CDS complement(2755588..2757519) /locus_tag="STM2608" /note="similar to terminase large chain gp2 of N15; similar to E. coli orf, hypothetical protein (AAC73662.1); Blastp hit to AAC73662.1 (247 aa), 53% identity in aa 7 - 132" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461544.1" /db_xref="GI:16765929" /db_xref="GeneID:1254131" /translation="MISGERRANNANRAITNGLIALHIPVPLTTVQWADEYYYLPKES SYTPGKWETLPFQVAIMNAMGYELIRVVNLIKSARVGYTKMLLGVEGYFIEHKSRNSL LFQPTDSSAEDFMKSHVEPTIRDVPVLLELAPWFGRKHRDNTLTLKRFSSGVGFWCLG GAAAKNYREKSVDVVCYDELSSFEPDVEKEGSPTLLGDKRIEGSVWPKSIRGSTPKVK GSCQIEKAANESAHFMRFYVPCPHCGEEQYLKFGDGSTPFGLKWEKSKPETVYYLCEH NGCVIRQSELDQKAGRWICDNTGMWTRDGLAYFSASGEEVPPPRSITFHIWTAYSPFT TWIQIIYDWLDALKDPNGVKTFINTTLGEPYEEAVAEKLSHELLLEKVIHYAAPVPER VVYLTAGIDSQRNRYEMYVWGWAPGEEAFLIDKQIIMGRHDDEDTLQRVDAVINKKYR HADGTDISISRICWDIGGIDAEIVYKRSKKHGIFRVLPVKGASVYGKPVITMPKKRNQ SGVFLCEIGTDTAKEMLYARMGAVTAPADEATPYAIRFPDNPDVFTEVEAKQLVAEEL VEKLVNGKFRLLWDAKGRRNEALDCLVYASAALRVSVQRWQLDLEALATSRKSEEQDT PTLEQLAAMLAGGVNGNNH" regulatory complement(2755607..2755612) /regulatory_class="ribosome_binding_site" /locus_tag="STM2607" /note="putative RBS for STM2607; RegulonDB:STMS1H002704" gene complement(2757491..2758036) /locus_tag="STM2609" /db_xref="GeneID:1254132" CDS complement(2757491..2758036) /locus_tag="STM2609" /note="similar to DNA packaging protein Nu1 of phage 21; similar to E. coli homolog of Qin prophage packaging protein NU1 (AAC74621.1); Blastp hit to AAC74621.1 (189 aa), 58% identity in aa 1 - 162" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461545.2" /db_xref="GI:1109557704" /db_xref="GeneID:1254132" /translation="MNVNKKKLAEIFGCDVRTVTAWQSQGLPLVSGGGKGNEAVFDTA AAISWYAERDASIENEKLRKEVDDLRAAAESDLNPGTIDYERYRLTKAQADAQELKNA EREGLVLETELFTYILQRVAQEIAGILSRVPLVLQRKYPDLCQSHIDVVRTEIARASG RAATIADVEKWTDDFRRAQGE" regulatory complement(2757521..2757526) /regulatory_class="ribosome_binding_site" /locus_tag="STM2609" /note="putative RBS for STM2608; RegulonDB:STMS1H002705" regulatory complement(2758046..2758051) /regulatory_class="ribosome_binding_site" /note="putative RBS for STM2609; RegulonDB:STMS1H002706" gene 2758310..2758724 /locus_tag="STM2610" /db_xref="GeneID:1254133" regulatory 2758310..2758315 /regulatory_class="ribosome_binding_site" /locus_tag="STM2610" /note="putative RBS for STM2610; RegulonDB:STMS1H002707" CDS 2758323..2758724 /locus_tag="STM2610" /note="similar to E. coli orf, hypothetical protein (AAC74262.1); Blastp hit to AAC74262.1 (133 aa), 80% identity in aa 1 - 133" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461546.1" /db_xref="GI:16765931" /db_xref="GeneID:1254133" /translation="MKFKSIAKTVFLFALLTSAGFATGKNVNVEFDKGQNSARYSGVI KGYDYDTYNFQARKGQKVHVSISNEGADTYLFGPGISDSVDLSRYSSELDGNGQYTLP ASGKYELKVLQTRNEARKNKAKKYSVNIQIK" gene complement(2758960..2759418) /locus_tag="STM2611" /db_xref="GeneID:1254134" CDS complement(2758960..2759412) /locus_tag="STM2611" /note="similar to E. coli bacteriophage lambda endopeptidase homolog (AAC73657.1); Blastp hit to AAC73657.1 (153 aa), 46% identity in aa 8 - 153" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461547.3" /db_xref="GI:1109557705" /db_xref="GeneID:1254134" /translation="MFVGLLLVSLIVAGRLANHYRNNAITYKYQRDTATHNLKLANET ITDMTKRQRDVAALDAKYTKELADAQNRNTDLQRRLAAGSRVRVEGRCTVPTTTTTKT ASTRRVGNAATVELSPVAGQNVLDIRAGIISDQEKLKYLQEYIRTQCK" regulatory complement(2759413..2759418) /regulatory_class="ribosome_binding_site" /locus_tag="STM2611" /note="putative RBS for STM2611; RegulonDB:STMS1H002708" gene complement(2759430..2759889) /locus_tag="STM2612" /db_xref="GeneID:1254135" CDS complement(2759430..2759882) /locus_tag="STM2612" /note="similar to morphogenesis protein of phage B103; similar to E. coli bacteriophage lambda lysozyme homolog (AAC73656.1); Blastp hit to AAC73656.1 (165 aa), 39% identity in aa 35 - 161" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461548.1" /db_xref="GI:16765933" /db_xref="GeneID:1254135" /translation="MMRISEKGITLIKEFEGCSLKAYPDPGTGGDPWTIGYGWTHSVD GKPVKPGMMIDEATAERLLKTGLVGYENDVSRLVKVKLTQGQFDALVSFAYNLGARTL STSTLLRKLNAGDYAGAADEFLRWNKAGSKVLNGLTRRREAERALFLS" gene complement(2759866..2760202) /locus_tag="STM2613" /db_xref="GeneID:1254136" CDS complement(2759866..2760195) /locus_tag="STM2613" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461549.1" /db_xref="GI:16765934" /db_xref="GeneID:1254136" /translation="MNDKTPEFWAAVLTGLKNAWPQILGALMAGLIAYGRLIYDGATR KNKWLEGVLCGALSLCVTSALDVVGLPVSISPFVGGIIGFVGVDKLREIAISALKKRA GVNDENQ" regulatory complement(2759884..2759889) /regulatory_class="ribosome_binding_site" /locus_tag="STM2613" /note="putative RBS for STM2612; RegulonDB:STMS1H002709" regulatory complement(2760197..2760202) /regulatory_class="ribosome_binding_site" /locus_tag="STM2613" /note="putative RBS for STM2613; RegulonDB:STMS1H002710" gene 2760465..2761157 /locus_tag="STM2614" /db_xref="GeneID:1254137" regulatory 2760465..2760470 /regulatory_class="ribosome_binding_site" /locus_tag="STM2614" /note="putative RBS for STM2614; RegulonDB:STMS1H002711" CDS 2760471..2761157 /locus_tag="STM2614" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461550.1" /db_xref="GI:16765935" /db_xref="GeneID:1254137" /translation="MPAGIKPIFINNMMSIYGLSNPHDSKVFPDLPEHQDNPSQLRLQ HDGLATDDKARLEPMCLAEYLISGPGGMDPDIEIDDDTYDECREVLSRILEDAYTQSG TFRRLMNYAYDQELHDVEQRWLLGAGENFGTTVTDEDLESSEGRKVIALNLDDTDDDS IPECYESNDGPQPFDTTRSFIHEVVHALTHLQDKEDNNPRGPVVEYTNIILKEMGHTS PPRIAYESSN" gene complement(2761650..2761723) /locus_tag="STM2615" /db_xref="GeneID:1254138" tRNA complement(2761650..2761723) /locus_tag="STM2615" /product="tRNA-OTHER" /db_xref="GeneID:1254138" gene complement(2762067..2762637) /locus_tag="STM2616" /db_xref="GeneID:1254139" CDS complement(2762067..2762630) /locus_tag="STM2616" /note="similar to antirepressor protein of phage P22" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461551.1" /db_xref="GI:16765936" /db_xref="GeneID:1254139" /translation="MTTQISVETLSPITHNQIPVITTELLAHLYGTKIKNISDNFLNN TTRFVVGKHFFKIEKNELREFKNRPETIGLVGKNARSLILWTERGAARHAKMLETDQA WEVFEKLEDCYFSQTLPSPTRQVQPAVDMLNIDLLIKIRDGNVKDIRQVGLDMFVGKV EQILSGLRDSGWIVIKRDLLAEKLATW" regulatory complement(2762632..2762637) /regulatory_class="ribosome_binding_site" /locus_tag="STM2616" /note="putative RBS for STM2616; RegulonDB:STMS1H002713" gene complement(2762903..2763587) /locus_tag="STM2617" /db_xref="GeneID:1254140" CDS complement(2762903..2763580) /locus_tag="STM2617" /note="similar to antiterminator Q" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461552.1" /db_xref="GI:16765937" /db_xref="GeneID:1254140" /translation="MNTQYLQYVREQLMVATADLSGETKGQLLAWLENAQFDTKNYPR KKQRIWDEETESWITLNNPPIPGKQSLAKGSAIPLVKPVEYSTASWRRAVLSLDEHYK AWLLWNYSENTCWEHQVEITQWGWSAFAAQLDGKKMAGKTQERLRALIWLAAQDVKSE LAGREVYQYKELAGLVGVSEKNWSETFTRHWLTMRAIFLRLDQASLLSVSESRSEQVA FNLYALN" gene complement(2763577..2763724) /locus_tag="STM2618" /db_xref="GeneID:1254141" CDS complement(2763577..2763717) /locus_tag="STM2618" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461553.1" /db_xref="GI:16765938" /db_xref="GeneID:1254141" /translation="MKPELIEILRMRWQRLRIYRRPGSVLVDYRILRNFVRIYQFTGF TQ" regulatory complement(2763582..2763587) /regulatory_class="ribosome_binding_site" /locus_tag="STM2618" /note="putative RBS for STM2617; RegulonDB:STMS1H002714" gene complement(2763714..2764331) /locus_tag="STM2619" /db_xref="GeneID:1254142" CDS complement(2763714..2764325) /locus_tag="STM2619" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461554.1" /db_xref="GI:16765939" /db_xref="GeneID:1254142" /translation="MAKLPRRKCANKECRQWFHPIREGQIVCSYQCASAVGKEQTRKA REAAQRKAQSLQRAAEKKERAAWRQRKAAVKPLKHWIDLTQRAVNDICRETELAEGLG CISCGTKTAFAWHAGHYRSTAAAGHLRFTRFNIHLQCDVCNVYKSGNIEAYRTALVER YGEAAVLALENNNTPHRWTVEELKEIRLAALADLRALKKLEAA" regulatory complement(2763719..2763724) /regulatory_class="ribosome_binding_site" /locus_tag="STM2618" /note="putative RBS for STM2618; RegulonDB:STMS1H002715" regulatory complement(2764326..2764331) /regulatory_class="ribosome_binding_site" /locus_tag="STM2619" /note="putative RBS for STM2619; RegulonDB:STMS1H002716" gene complement(2764534..2765142) /locus_tag="STM2620" /db_xref="GeneID:1254143" CDS complement(2764534..2765136) /locus_tag="STM2620" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461555.1" /db_xref="GI:16765940" /db_xref="GeneID:1254143" /translation="MAHELQLIKQSSGILIPATPETSEILQSKIKLGAVLVAEFRQVR NPAFHRRFFALLNLGFEYWEPTGGAISANERKLVNGYAKFLAAYGGNESALLDAAEQY LEQIANRRVTNGISLCKSFDAYRAWVTVEAGHYDAIQLPDGTLRKHPRSIAFSSMDEV EFQQLYKSALDVLWRWILSRTFRTQREAENAAAQLMSWAG" regulatory complement(2765137..2765142) /regulatory_class="ribosome_binding_site" /locus_tag="STM2620" /note="putative RBS for STM2620; RegulonDB:STMS1H002717" gene complement(2765552..2765791) /locus_tag="STM2621" /db_xref="GeneID:1254144" CDS complement(2765552..2765785) /locus_tag="STM2621" /note="hypothetical protein 13 (gi|7467262)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461556.1" /db_xref="GI:16765941" /db_xref="GeneID:1254144" /translation="MRIELVISRAKQLPEGAVPALEKELITRLQNQYENCNLTIRRGS QDGLSIVGAADGDKKRIQSILQETWESADDWFY" regulatory complement(2765786..2765791) /regulatory_class="ribosome_binding_site" /locus_tag="STM2621" /note="putative RBS for STM2621; RegulonDB:STMS1H002718" gene complement(2766077..2766370) /locus_tag="STM2622" /db_xref="GeneID:1254145" CDS complement(2766077..2766370) /locus_tag="STM2622" /note="hypothetical protein 11 (gi|7467261)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461557.1" /db_xref="GI:16765942" /db_xref="GeneID:1254145" /translation="MMNYEDKLMYQRMIFEEGKEPRLYSSQHDSKFIPISNNNGKVQK VPVMELKDTRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD" gene complement(2766445..2766762) /locus_tag="STM2623" /db_xref="GeneID:1254146" CDS complement(2766445..2766756) /locus_tag="STM2623" /note="hypothetical protein 11 (gi|7467260)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461558.1" /db_xref="GI:16765943" /db_xref="GeneID:1254146" /translation="MSNIDKRALREVAERATPGNWRRTSSLFNGITVTPFSLCGEEVT LAHTVEKRDAEFIAAANPATVLALLDVLYEFGEDEVAISEYVTNLEDALRVAAAPQQE E" gene complement(2766753..2767106) /locus_tag="STM2624" /db_xref="GeneID:1254147" CDS complement(2766753..2767100) /locus_tag="STM2624" /note="hypothetical protein (gi|7467246)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461559.1" /db_xref="GI:16765944" /db_xref="GeneID:1254147" /translation="MARPKTQSERMIILERIIGLVKEQGRITTNDVVAIFGVHRTTAE KYLRIALERGGFIRHGRCGIFRDQRAVIDYDLRRYSSSQVTGFSALPVLEKSPVMQVY GASKMSINKGGAQ" regulatory complement(2766757..2766762) /regulatory_class="ribosome_binding_site" /locus_tag="STM2623" /note="putative RBS for STM2623; RegulonDB:STMS1H002719" regulatory complement(2767101..2767106) /regulatory_class="ribosome_binding_site" /locus_tag="STM2624" /note="putative RBS for STM2624; RegulonDB:STMS1H002720" gene complement(2767111..2767867) /locus_tag="STM2625" /db_xref="GeneID:1254148" CDS complement(2767111..2767860) /locus_tag="STM2625" /note="similar to dnaC homolog in S. typhimurium; dnaC protein homolog (gi|7443681)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461560.1" /db_xref="GI:16765945" /db_xref="GeneID:1254148" /translation="MKNVIGTGSALDRLKRIIPASVQPKFSTADEWRAWQEAEGRKRS EELDRMNQKSRTEKIFGRSGIQDLHRSCTFANYEVSGEGQRKAYTMAKSYAQNFGSGF ASFVFSGGPGTGKNHLAAAIGNHLLAGGHSVLVVTIPDLMLRVRECYDGGQSEASLLD DLCKVDLLVLDEVGIQRGSSGEKVILNQVIDRRLSSMRPVGVLTNLNHEGLLDSLGAR VIDRLQMDGGMWVNFDWESYRKNVSHLRIVK" regulatory complement(2767862..2767867) /regulatory_class="ribosome_binding_site" /locus_tag="STM2625" /note="putative RBS for STM2625; RegulonDB:STMS1H002721" gene complement(2767863..2768852) /locus_tag="STM2626" /db_xref="GeneID:1254149" CDS complement(2767863..2768846) /locus_tag="STM2626" /note="similar to replication protein 15; probable replication protein (gi|7467283)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461561.1" /db_xref="GI:16765946" /db_xref="GeneID:1254149" /translation="MSMSNTAEIYKFPAPIPTQQECRMADLENGYLRLANQIQDALCI VELSGREFRVLNAIIRLTYGWSKKSDRIANSLIADKTTLKVKHVSEAVLSLAYRNIII LRRIGQTRYIGINTNLDKWAYSKPHCSKCPVSFPDDEIATWIISVPETRDSYPRKGGR ASPKTGIVIPENRDSVLPHSAIPENGDSYPRKEGRASPKTGNTKDIIPKTNIKDLTPF NPPKGKVKFDPLSIPVPEWLNAASWNEWVTYRQQSGKPIKTELTVTKAFRLLKECLDE GHDPVNVINTSIANGYQGLFKPKFALNDRRAGRDVNHISAPDKTIPTGFRG" regulatory complement(2768847..2768852) /regulatory_class="ribosome_binding_site" /locus_tag="STM2626" /note="putative RBS for STM2626; RegulonDB:STMS1H002722" gene complement(2768931..2769305) /locus_tag="STM2627" /db_xref="GeneID:1254150" CDS complement(2768931..2769305) /locus_tag="STM2627" /note="similar to cI protein in phage N; probable regulatory protein (gi|7467282)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461562.1" /db_xref="GI:16765947" /db_xref="GeneID:1254150" /translation="MAYQAKRHQPNNHRGYLPMENAIARKLDPPEINPIEIESVLLNR LASVGQKSYAEHMGISESTVSRRKAEGYFCNMAKELAFLGIQAAPPEAVLVSRNYLTA VEILADAGLKAERARPDALGWD" gene 2769611..2770040 /locus_tag="STM2628" /db_xref="GeneID:1254151" regulatory 2769611..2769616 /regulatory_class="ribosome_binding_site" /locus_tag="STM2628" /note="putative RBS for STM2628; RegulonDB:STMS1H002723" CDS 2769630..2770040 /locus_tag="STM2628" /note="probable regulatory protein (gi|7467281)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461563.1" /db_xref="GI:16765948" /db_xref="GeneID:1254151" /translation="MNKNLHPIFAKRIQQVLDENGWSMADLSRRVMLSHTSVRKWASG TSVASGERLKRLSAVTGRPEYWFFMEPGDESEGERAEPKPRVLDEKEETLLSLFNQLP EAEKLRVILHTKAVLQEMDLLKNNVFDLINDLKK" gene 2770084..2770350 /locus_tag="STM2629" /db_xref="GeneID:1254152" regulatory 2770084..2770089 /regulatory_class="ribosome_binding_site" /locus_tag="STM2629" /note="putative RBS for STM2629; RegulonDB:STMS1H002724" CDS 2770090..2770350 /locus_tag="STM2629" /note="hypothetical protein 2 (gi|7467263)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461564.1" /db_xref="GI:16765949" /db_xref="GeneID:1254152" /translation="MLQDRTFSCTFCFTNRTFGFIVSFIDNKRIVVRCKTFRWPAIRQ TRVRMIDFARKPARQQAVPLNRIEVLIRRLCYLLAQKGDPDA" gene 2770336..2770501 /locus_tag="STM2630" /db_xref="GeneID:1254153" regulatory 2770336..2770341 /regulatory_class="ribosome_binding_site" /locus_tag="STM2630" /note="putative RBS for STM2630; RegulonDB:STMS1H002725" CDS 2770343..2770501 /locus_tag="STM2630" /note="hypothetical protein 4 (gi|7467265)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461565.1" /db_xref="GI:16765950" /db_xref="GeneID:1254153" /translation="MLKQCGYCRKSIDEGKEVKNTLLYLNGSQLARKEKEYCSRQCAE YDQMAHES" gene 2770523..2770873 /locus_tag="STM2631" /db_xref="GeneID:1254154" CDS 2770523..2770873 /locus_tag="STM2631" /note="hypothetical protein 4 (gi|7467264)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461566.1" /db_xref="GI:16765951" /db_xref="GeneID:1254154" /translation="MKNSPLIWRGFLHPEFKTGEIMEIVKIEMNLKAVNKSIALFNCE KKVSGVIHSNSTGETTVILDGGYVLGKFDCPHCAVKAISLLTVKVSDGEQAGFGNYRS YKLDYSEKFYQTIH" gene 2770988..2773885 /locus_tag="STM2632" /db_xref="GeneID:1254155" regulatory 2770988..2770993 /regulatory_class="ribosome_binding_site" /locus_tag="STM2632" /note="putative RBS for STM2632; RegulonDB:STMS1H002726" CDS 2771000..2773885 /locus_tag="STM2632" /note="exodeoxyribonuclease VIII homolog (gi|7467238)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461567.1" /db_xref="GI:16765952" /db_xref="GeneID:1254155" /translation="MSGTNPVFLVRKAKKSSGQKDAVLWCSDDFEAANATLDYLLIKS GAKLKDYFKAVATNFPVVNELPPEGELSLTFCDYYQLAKDNMTWTQIPGVTLPSSEAA AAARQHIVDGVDTETGEVLEDHTENFGNESNSPAQATAPAPELTVVATMPLRHRVLAQ YIGEGEYLYHVDASQKKEILRLEMDTDNSYVQNLLLAAENVEAFKKAIEHDIHKIVNA VKKVFPVDGKTPELATVIQFLKTWFETEHIDRGLLVKEWAKGNRVSAIQRTESGANAG GGNKTDRNPDYEHTLDTLDVEIAMATLPMDFNIYELPGSVYRRAKEIVKKKESPFKEW SAALRATPGILDYSRAAIFALIRSAHPEFYHYPGRLQGYINANLTETDHENPTEEALT AARHTPEKDAVEEANRQLAAARGEYVEGISDPNDPKWVKTGTSQPTTEPELVKNVGNG IFDVSALMQNSSTHGTETNPETTSNVQVQKADSDEKQAGDAVQAGEDDLGTGKEAVTV ENQNQAEAQQNVPESQQEEPEAAWPEYFEPGRYEGVPNEVYHAANGISSTQVKDARVS LMYFNARHVEKTIVKERSPVLDMGNLVHVLALQPENLEAEFSVEPEIPEGAFTTTATL REFIDAHNASLPALLSADDIKALLEEYNATLPSQMPLGASVDETYASYEQLPEEFQRI ENGTKHTATAMKACIKEYNVTLPAPVKTSGSRDALLEQLAIINPDLVAQEAQKSSPLK VSGTKADLIQAVKSVNPAVVFADELLDAWRENTEGKVLVTRQQLSTALNIQKALLEHP TAGKLLTHPSRAVEVSYFGIDEETGLEVRVRPDLELDMGGLRIGADLKTISMWNIKQE GLRAKLHREIIDRDYHLSAAMYCETAALDQFFWIFVNKDENYHWVAIIEASTELLELG MLEYRKTMREIANGFDTGEWSAPITEDYTDELNDFDVRRLEALRVQA" gene 2773844..2775005 /locus_tag="STM2633" /db_xref="GeneID:1254156" regulatory 2773844..2773849 /regulatory_class="ribosome_binding_site" /locus_tag="STM2633" /note="putative RBS for STM2633; RegulonDB:STMS1H002727" CDS 2773848..2775005 /locus_tag="STM2633" /note="similar to enterohemolysin 1 in E. coli; hypothetical protein AAC26069.1 (gi|7467267)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461568.3" /db_xref="GI:1109557706" /db_xref="GeneID:1254156" /translation="MCAALKRCAYRHKGKIMENTNIVTTEQQAPNTISASNAIFNVQA LGQLTAFANLMADSQVTVPAHLAGKPADCMAIVMQAMQWGMNPYAVAQKTHLVNGVLG YEAQLVNAVIASSSAIHGRFHYRYGGDWERCTRTQEITRDKNGKNGKYTVTERVRGWT DEDEIGLFVQVGAILRGESEITWGEPLYLSGVVTRNSPLWVSNPKQQIAYLGVKYWAR LYCPEVILGVYSPDEVEQREEREINPAPVQRMSVQEITSEVSTRTSAQESAANVDAVA DDLRERIDTASSVDQAKAIRADIESQKALLGTALFTELKNKAVKRYYQVNAQNKVEAV INSIPNPGEPEAAEMFAKAESTLGAAKRHLGDELHDKYRVTLDDMKPEYIG" gene 2775040..2775287 /locus_tag="STM2634" /db_xref="GeneID:1254157" regulatory 2775040..2775045 /regulatory_class="ribosome_binding_site" /locus_tag="STM2634" /note="putative RBS for STM2634; RegulonDB:STMS1H002728" CDS 2775048..2775287 /locus_tag="STM2634" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461569.1" /db_xref="GI:16765954" /db_xref="GeneID:1254157" /translation="MRLINRSKQSPLGRRACDVALAAHHEKFGDYGRQKHVTNYTVVV DGVKVPVEVVNRATSYVATAMIGVRKLRNLPAQAN" gene 2775321..2775612 /locus_tag="STM2635" /db_xref="GeneID:1254158" regulatory 2775321..2775326 /regulatory_class="ribosome_binding_site" /locus_tag="STM2635" /note="putative RBS for STM2635; RegulonDB:STMS1H002729" CDS 2775328..2775612 /locus_tag="STM2635" /note="similar to excisionase in phage phi-80; probable excisionase (gi|7467278)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461570.1" /db_xref="GI:16765955" /db_xref="GeneID:1254158" /translation="MSKKIRDFELMSTREICCQLRISSRTLERYRKRPSDNNPFPEPD CSYMGGSNKWLKTKVNEWQVREMSRPTRRPMSHLNLPRDNKGRLIRSDVA" gene complement(2775590..2776825) /locus_tag="STM2636" /db_xref="GeneID:1254159" CDS complement(2775590..2776819) /locus_tag="STM2636" /note="similar to integrase in phage; probable integrase (gi|7467280)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461571.1" /db_xref="GI:16765956" /db_xref="GeneID:1254159" /translation="MAISDSYLKSCLGRERDKVEEKADRDGLWVRISKKGAVTFFYRF RFLGKQDKMTIGSYPEFGLKAAREEVTKWAAILARGENPRIRQSLDKAKINSQYTFEE LFREWHAMVCVQKETSDQILRSFELHVFPKLGKYPAHQLTLHNWLTVLDRLAQGYTEI TRRVISNGRQCYSWAVKRQLLEVNPLSEMSGRDFGIQKKMGERTLDRKEIAIVWRAIE DSRLIERNKILYKLSLIWACRVGELRQAEVSHFDFEEGVWTVPWENHKTGRKSKKPII RPIIPEMLPLIQRAIELAPGRFVFSKYADKPMSEGFHMSISSNLVKFMLKAYNEQVPH FTIHDLRRTARTNFSELTEPHIAEMMLGHKLPGVWSVYDKYTYIEEMREAYSKWWARL MSIIEPDVLEFTPRQTG" regulatory complement(2776820..2776825) /regulatory_class="ribosome_binding_site" /locus_tag="STM2636" /note="putative RBS for STM2636; RegulonDB:STMS1H002730" gene complement(2777317..2777808) /gene="rseC" /locus_tag="STM2637" /db_xref="GeneID:1254160" CDS complement(2777317..2777796) /gene="rseC" /locus_tag="STM2637" /note="similar to E. coli sigma-E factor, negative regulatory protein (AAC75623.1); Blastp hit to AAC75623.1 (159 aa), 81% identity in aa 1 - 159" /codon_start=1 /transl_table=11 /product="SoxR reducing system protein RseC" /protein_id="NP_461572.1" /db_xref="GI:16765957" /db_xref="GeneID:1254160" /translation="MIKEWATVVSWQNGQAVVSCDVKASCSSCASRAGCGSRVLNKLG PQTTHTIVVPSAEPLAPGQKVELGIAEKSLLGSALLVYMSPLAGLFLCAALFQMLFGS DLAALSGAVLGGVGGFLVARGYSRKLAERDAWQPVILNVALPPDLVRVETTSIETRQ" gene complement(2777793..2778768) /gene="rseB" /locus_tag="STM2638" /db_xref="GeneID:1254161" CDS complement(2777793..2778749) /gene="rseB" /locus_tag="STM2638" /note="similar to E. coli regulates activity of sigma-E factor (AAC75624.1); Blastp hit to AAC75624.1 (318 aa), 89% identity in aa 1 - 318" /codon_start=1 /transl_table=11 /product="sigma-E factor regulatory protein RseB" /protein_id="NP_461573.1" /db_xref="GI:16765958" /db_xref="GeneID:1254161" /translation="MKQLWFAMSLVAASLFFSANASADPASGALLQQMNIASQSLNYE LSFVSITKQGVESLRYRHARLDGRPLAQLLQLDGPRREVVQRGNEISYFEPGLEPFTL NGDYIVDSLPSLIYTDFKRLAPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWM DMDTKLPMRVDLLDRDGETLEQFRVIAFTVSQDIGSNMQALAKANLPPLLSVPGGEKT KFNWSPSWVPQGFSEVSSSRRPLPTMDNLPIESRLYSDGLFSFSVNVNRATQNSSDQM LRTGRRTVYSSVRDNAEITIVGELPPQTAKRIADSIKFRAVQ" regulatory complement(2777803..2777808) /regulatory_class="ribosome_binding_site" /gene="rseC" /locus_tag="STM2637" /note="putative RBS for rseC; RegulonDB:STMS1H002731" gene complement(2778749..2779417) /gene="rseA" /locus_tag="STM2639" /db_xref="GeneID:1254162" CDS complement(2778749..2779399) /gene="rseA" /locus_tag="STM2639" /note="similar to E. coli sigma-E factor, negative regulatory protein (AAC75625.1); Blastp hit to AAC75625.1 (216 aa), 91% identity in aa 1 - 216" /codon_start=1 /transl_table=11 /product="anti-sigma factor" /protein_id="NP_461574.1" /db_xref="GI:16765959" /db_xref="GeneID:1254162" /translation="MQKEKLSALMDGETLDSELLKALTHDPEMQKTWESYHLIRDSMR GDTPDVLHFDISARVMAAIENEPVRQVSPLIPEAQPAPQQWQKMPFWKKVRPWAAQLT QMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEAAPVG SQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ" regulatory complement(2778763..2778768) /regulatory_class="ribosome_binding_site" /gene="rseA" /locus_tag="STM2639" /note="putative RBS for rseB; RegulonDB:STMS1H002732" regulatory complement(2779412..2779417) /regulatory_class="ribosome_binding_site" /gene="rseA" /locus_tag="STM2639" /note="putative RBS for rseA; RegulonDB:STMS1H002733" gene complement(2779431..2780026) /gene="rpoE" /locus_tag="STM2640" /db_xref="GeneID:1254163" CDS complement(2779431..2780006) /gene="rpoE" /locus_tag="STM2640" /note="response to periplasmic stress; RNA polymerase sigma-e factor (sigma-24). (SW:RPOE_SALTY)" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma factor RpoE" /protein_id="NP_461575.1" /db_xref="GI:16765960" /db_xref="GeneID:1254163" /translation="MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG DVPDVVQESFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE AENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIA AIMDCPVGTVRSRIFRAREAIDNKVQPLIRR" regulatory complement(2780021..2780026) /regulatory_class="ribosome_binding_site" /gene="rpoE" /locus_tag="STM2640" /note="putative RBS for rpoE; RegulonDB:STMS1H002734" gene 2780431..2782053 /gene="nadB" /locus_tag="STM2641" /db_xref="GeneID:1254164" CDS 2780431..2782053 /gene="nadB" /locus_tag="STM2641" /EC_number="1.4.3.-" /note="similar to E. coli quinolinate synthetase, B protein (AAC75627.1); Blastp hit to AAC75627.1 (540 aa), 89% identity in aa 1 - 540" /codon_start=1 /transl_table=11 /product="L-aspartate oxidase" /protein_id="NP_461576.1" /db_xref="GI:16765961" /db_xref="GeneID:1254164" /translation="MMTTPELSCDVLIIGSGAAGLSLALRLAEKHKVIVLSKGPVSEG STFYAQGGIAAVFDETDSIASHVEDTLIAGAGICDRHAVEFVASNARTCVQWLIDQGV LFDTHVQPNGKESYHLTREGGHSHRRILHAADATGKEVETTLVSRAQNHPNIQVLERS NAVDLIISDKMGLPGPRRVVGAWIWNRNKEWVETCHAKSVVLATGGASKVYQYTTNPD ISSGDGIAMAWRAGCRVANLEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGSR FMPDVDERGELAPRDIVARAIDHEMKQLGADCMFLDISHKPDDFVRQHFPMIYAKLLD LGMDLTKEPIPVVPAAHYTCGGVVVDDYGRTDVDGLYAIGEVSYTGLHGANRMASNSL LECLVYGWSAAMDIDRRMPSVHSVDALPAWDESRVENADERVVIQHNWHELRLLMWDY VGIVRTTKRLERALRRITMLQQEIDEYYANFRVSNNLLELRNLVQVAELIVRCAMMRK ESRGLHFTLDYPQQLAESGPSILSPLTPHINR" gene complement(2782038..2782789) /gene="yfiC" /locus_tag="STM2642" /db_xref="GeneID:1254165" CDS complement(2782038..2782775) /gene="yfiC" /locus_tag="STM2642" /note="similar to E. coli putative enzyme (AAC75628.1); Blastp hit to AAC75628.1 (285 aa), 84% identity in aa 41 - 285" /codon_start=1 /transl_table=11 /product="tRNA (adenosine(37)-N6)-methyltransferase TrmM" /protein_id="NP_461577.1" /db_xref="GI:16765962" /db_xref="GeneID:1254165" /translation="MSQSGSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAD VKRILDIGTGSGLLALMLAQRTDDNVPIDAVELDAGAAMQAQENVAHSPWPHRITVHT DDIQRWAPRQTVRFDLIISNPPYYEPGVECATPQREQARYTATLDHQTLLAIAADCIT EDGFFCVVLPEQIGNAFTQQALNMGWHLRLRTDVAENEARLPHRVLLAFSPQAGECFS DRLVIRGSDQHYSESYTALTQAFYLFM" regulatory complement(2782784..2782789) /regulatory_class="ribosome_binding_site" /gene="yfiC" /locus_tag="STM2642" /note="putative RBS for yfiC; RegulonDB:STMS1H002735" gene 2782896..2784240 /gene="srmB" /locus_tag="STM2643" /db_xref="GeneID:1254166" regulatory 2782896..2782901 /regulatory_class="ribosome_binding_site" /gene="srmB" /locus_tag="STM2643" /note="putative RBS for srmB; RegulonDB:STMS1H002736" CDS 2782906..2784240 /gene="srmB" /locus_tag="STM2643" /EC_number="2.7.7.-" /note="similar to E. coli ATP-dependent RNA helicase (AAC75629.1); Blastp hit to AAC75629.1 (444 aa), 93% identity in aa 1 - 444" /codon_start=1 /transl_table=11 /product="ATP-dependent RNA helicase SrmB" /protein_id="NP_461578.1" /db_xref="GI:16765963" /db_xref="GeneID:1254166" /translation="MTVTTFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDV LGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKH THLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEAD RMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIKDFAERLLEDPVEVSANPSTRE RKKIHQWYYRADNFEHKVALLKHLLKQDDATRSIVFVRKRERVHELAETLRLAGINNC YLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLH RIGRTGRAGRKGTAISLVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPSEKLTG KPSKKVLAKRAEKKKEKEKEKPRVKKRHRDTKNIGKRRKPSGTKMQEQSSEE" gene complement(2784258..2785163) /gene="yfiE" /locus_tag="STM2644" /db_xref="GeneID:1254167" CDS complement(2784258..2785157) /gene="yfiE" /locus_tag="STM2644" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC75630.1); Blastp hit to AAC75630.1 (308 aa), 78% identity in aa 16 - 305" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_461579.1" /db_xref="GI:16765964" /db_xref="GeneID:1254167" /translation="MDLRRFITLKTVVEEGSFLRASQKLCCTQSTVTFHIQQLEREFS LQLFEKIGRRMCLTNEGKKLMPHIHELTRVMESIREAARQDAEPGGELRVATGETLLA YKMPQVLQRFKLRAPNVRLSLQSLNCYVIRDALLNDEVDLGVFYRVGNDDALTMQQLG KQSLALVASPLLQDADFTQPDQHIPCSFIINEPQCVFRQLFESTLRQRRITLENTIEL WSIESIKQCVAANLGISFLPRFAVERELSTGQLKELPFGAPSLSIMALCAHHAGKAVS PAMQIFMQCMEACFTVEDKKMPG" regulatory complement(2785158..2785163) /regulatory_class="ribosome_binding_site" /gene="yfiE" /locus_tag="STM2644" /note="putative RBS for yfiE; RegulonDB:STMS1H002737" gene 2785247..2785847 /gene="yfiK" /locus_tag="STM2645" /db_xref="GeneID:1254168" regulatory 2785247..2785252 /regulatory_class="ribosome_binding_site" /gene="yfiK" /locus_tag="STM2645" /note="putative RBS for yfiK; RegulonDB:STMS1H002738" CDS 2785260..2785847 /gene="yfiK" /locus_tag="STM2645" /note="similar to E. coli orf, hypothetical protein (AAC75631.1); Blastp hit to AAC75631.1 (195 aa), 83% identity in aa 1 - 195" /codon_start=1 /transl_table=11 /product="amino acid transporter" /protein_id="NP_461580.1" /db_xref="GI:16765965" /db_xref="GeneID:1254168" /translation="MTPMLLSAFWTYTLITALTPGPNNILALSAATAHGFRQSIRVLA GMSLGFLVVMLLCAGIAFSLAVIDPAIIHLLSWVGAAYILWLAWKIATSPAADENARP KPVGFWVSFGLQFVNVKIILYGITALSTFVLPQTQALNWVIGVSILLALIGTFGNVCW ALAGHLFQRAFRHYGRQLNIILALLLVYCAVRIFY" gene complement(2785909..2786307) /gene="yfiD" /locus_tag="STM2646" /db_xref="GeneID:1254169" CDS complement(2785909..2786292) /gene="yfiD" /locus_tag="STM2646" /note="similar to E. coli putative formate acetyltransferase (AAC75632.1); Blastp hit to AAC75632.1 (127 aa), 96% identity in aa 1 - 127" /codon_start=1 /transl_table=11 /product="autonomous glycyl radical cofactor GrcA" /protein_id="NP_461581.1" /db_xref="GI:16765966" /db_xref="GeneID:1254169" /translation="MITGIQITKAANDDLLNSFWLLDSEKGEARCIVAKSGFAEDEVV AVSKLGEIEYREIPMEVKPEVRVEGGQHLNVNVLRRETLEDAVKHPEKYPQLTIRVSG YAVRFNSLTPEQQRDVIARTFTESL" regulatory complement(2786302..2786307) /regulatory_class="ribosome_binding_site" /gene="yfiD" /locus_tag="STM2646" /note="putative RBS for yfiD; RegulonDB:STMS1H002739" gene 2786599..2787300 /gene="ung" /locus_tag="STM2647" /db_xref="GeneID:1254170" regulatory 2786599..2786604 /regulatory_class="ribosome_binding_site" /gene="ung" /locus_tag="STM2647" /note="putative RBS for ung; RegulonDB:STMS1H002740" CDS 2786611..2787300 /gene="ung" /locus_tag="STM2647" /EC_number="3.2.2.-" /note="similar to E. coli uracil-DNA-glycosylase (AAC75633.1); Blastp hit to AAC75633.1 (229 aa), 90% identity in aa 1 - 229" /codon_start=1 /transl_table=11 /product="uracil-DNA glycosylase" /protein_id="NP_461582.1" /db_xref="GI:16765967" /db_xref="GeneID:1254170" /translation="MATELTWHDVLADEKQQPYFINTLHTVAGERQSGITVYPPQKDV FNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAPPPSLVNMYKELEASIPG FVRPAHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVV FLLWGSHAQKKGAIIDPQRHHILKAPHPSPLSAHRGFFGCNHFALTNQWLEQHGEKTI DWTPVLPAESE" gene complement(2787416..2788465) /gene="yfiF" /locus_tag="STM2648" /db_xref="GeneID:1254171" CDS complement(2787416..2788453) /gene="yfiF" /locus_tag="STM2648" /EC_number="2.1.1.-" /note="similar to E. coli orf, hypothetical protein (AAC75634.1); Blastp hit to AAC75634.1 (345 aa), 87% identity in aa 1 - 345" /codon_start=1 /transl_table=11 /product="putative tRNA/rRNA methyltransferase" /protein_id="NP_461583.1" /db_xref="GI:16765968" /db_xref="GeneID:1254171" /translation="MNDELKNKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPAKSRT DGGRRPARDERNNQSRDRKHETSPWRTVSRAPGDETPEKVDHGGISGKSFIDPEVLRR QRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA ELAKASGTEHHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSC AHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTS SDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGV LLAEWWRQNKA" regulatory complement(2788460..2788465) /regulatory_class="ribosome_binding_site" /gene="yfiF" /locus_tag="STM2648" /note="putative RBS for yfiF; RegulonDB:STMS1H002741" gene 2788647..2789076 /gene="trxC" /locus_tag="STM2649" /db_xref="GeneID:1254172" regulatory 2788647..2788652 /regulatory_class="ribosome_binding_site" /gene="trxC" /locus_tag="STM2649" /note="putative RBS for trxC; RegulonDB:STMS1H002742" CDS 2788657..2789076 /gene="trxC" /locus_tag="STM2649" /note="similar to E. coli putative thioredoxin-like protein (AAC75635.1); Blastp hit to AAC75635.1 (139 aa), 94% identity in aa 1 - 139" /codon_start=1 /transl_table=11 /product="thioredoxin TrxC" /protein_id="NP_461584.1" /db_xref="GI:16765969" /db_xref="GeneID:1254172" /translation="MNTVCTHCQAINRIPDDRLQDAAKCGRCGHELFDGEVINATGET LDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAEERSGKVRFVKVNTEAERELSARF GIRSIPTIMIFKHGQVVDMLNGAVPKAPFDSWLNEAL" gene 2789149..2789829 /gene="yfiP" /locus_tag="STM2650" /db_xref="GeneID:1254173" CDS 2789149..2789829 /gene="yfiP" /locus_tag="STM2650" /note="similar to E. coli orf, hypothetical protein (AAC75636.1); Blastp hit to AAC75636.1 (240 aa), 88% identity in aa 9 - 234" /codon_start=1 /transl_table=11 /product="DTW domain-containing protein" /protein_id="NP_461585.1" /db_xref="GI:16765970" /db_xref="GeneID:1254173" /translation="MTNNAVLQLRAERLARATRPFLARGNRVRRCQRCLLPLKSCLCD TLTPSQAKSRFCLVMFDTEPMKPSNTGRLIADILPDTAAFQWSRTEPPQALLELVQHP DYQPIVVFPASYAGEAREVISTPPAGKPPLFIMLDGTWPEARKMFRKCPYLDHLPVIS VDLSRLSAYRLREIHAEGQYCTAEVAIALLDLAGDTEAATSLGEHFTRFKTRYLAGKT QHPGNVTA" gene 2789870..2792543 /gene="yfiQ" /locus_tag="STM2651" /db_xref="GeneID:1254174" regulatory 2789870..2789875 /regulatory_class="ribosome_binding_site" /gene="yfiQ" /locus_tag="STM2651" /note="putative RBS for yfiQ; RegulonDB:STMS1H002743" CDS 2789883..2792543 /gene="yfiQ" /locus_tag="STM2651" /note="similar to E. coli orf, hypothetical protein (AAC75637.1); Blastp hit to AAC75637.1 (886 aa), 92% identity in aa 1 - 886" /codon_start=1 /transl_table=11 /product="protein acetyltransferase" /protein_id="NP_461586.1" /db_xref="GI:16765971" /db_xref="GeneID:1254174" /translation="MSQQGLEALLRPKSIAVIGASMKPHRAGYLMMRNLLAGGFNGPV LPVTPAWKAVLGVMAWPDIASLPFTPDLAILCTNASRNLALLDALGAKGCKTCIILSA PTSQHEELLACARHYKMRLLGPNSLGLLAPWQGLNASFSPVPIKQGKLAFISQSAAVS NTILDWAQQREMGFSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFV SAARSASRNKPILVIKSGRSPAAQRLLNTSAGMDPAWDAAIQRAGLLRVQDTHELFSA VETLSHMRPLRGDRLMIISNGAAPAALALDELWSRNGKLATLSEETCLQLRQALPAHI DIANPLDLCDDASSEHYVKTLDILLASQDFDALMVIHSPSAAAPGTESAHALIETIKR HPRGKFVTLLTNWCGEFSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRNQKQLR ETPALPSNLTSNTAEAHNLLQRAIAEGAASLDTHEVQPILHAYGLHTLPTWIASDSAE AVHIAEQIGYPVALKLRSPDIPHKSEVQGVMLYLRTASEVQQAANAIFDRVKMAWPQA RIHGLLVQSMANRAGAQELRVVVEHDPVFGPLIMLGEGGVEWRPEEQAVVALPPLNMN LARYLVIQGIKQRKIRARSALRPLDIVGLSQLLVQVSNLIVDCPEIQRLDIHPLLASA SEFTALDVTLDIAPFDGDNESRLAVRPYPHQLEEWVEMKNGDRCLFRPILPEDEPQLR QFIAQVTKEDLYYRYFSEINEFTHEDLANMTQIDYDREMAFVAVRRMDNAEEILGVTR AISDPDNVDAEFAVLVRSDLKGLGLGRRLMEKLIAYTRDHGLKRLNGITMPNNRGMVA LARKLGFQVDIQLEEGIVGLTLNLAKCDES" gene 2792640..2794013 /gene="pssA" /locus_tag="STM2652" /db_xref="GeneID:1254175" regulatory 2792640..2792645 /regulatory_class="ribosome_binding_site" /gene="pssA" /locus_tag="STM2652" /note="putative RBS for pssA; RegulonDB:STMS1H002744" CDS 2792658..2794013 /gene="pssA" /locus_tag="STM2652" /EC_number="2.7.8.8" /note="CDP-diacylglycerol-serine O-phosphatidyltransferase; similar to E. coli phosphatidylserine synthase; phospholipid synthesis (AAC75638.1); Blastp hit to AAC75638.1 (452 aa), 93% identity in aa 2 - 452" /codon_start=1 /transl_table=11 /product="phosphatidylserine synthase" /protein_id="NP_461587.1" /db_xref="GI:16765972" /db_xref="GeneID:1254175" /translation="MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYTPATFRETLLEKI ASATQRICIVALYLEQDDGGKGILDALYAAKRQRPELDVRVLVDWHRAQRGRIGAAAS NTNADWYCRLAQENPGIDVPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDVYL HQHDKYRYDRYQLIRNRQMADIMFDWVTQNLMNGRGVNRLDNTQRPKSPEIKNDIRLY RQELRDASYHFQGDANDEQLSVTPLVGLGKSSLLNKTIFHLMPCAEHKLTICTPYFNL PAVLVRNIIQLLRDGKKVEIIVGDKTANDFYIPEDEPFKIIGALPYLYEINLRRFLSR LQYYVNTDQLVVRLWKDDDNTYHLKGMWVDDKWMLLTGNNLNPRAWRLDLENAILIHD PKQELAPQREKELELIRTHTTIVKHYRDLQSIADYPIKVRKLIRRLRRIRIDRLISRI L" gene 2794045..2794381 /gene="yfiM" /locus_tag="STM2653" /db_xref="GeneID:1254176" regulatory 2794045..2794050 /regulatory_class="ribosome_binding_site" /gene="yfiM" /locus_tag="STM2653" /note="putative RBS for yfiM; RegulonDB:STMS1H002745" CDS 2794058..2794381 /gene="yfiM" /locus_tag="STM2653" /note="similar to E. coli orf, hypothetical protein (AAC75639.1); Blastp hit to AAC75639.1 (90 aa), 80% identity in aa 1 - 90" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461588.1" /db_xref="GI:16765973" /db_xref="GeneID:1254176" /translation="MRVLIPFTVLFLSGCSHLANDHWSGQDKAQHFMASAMLSAAGNE YARHQGVSPDRSAAIGLMFSLSLGASKELWDSRPEGSGWSWKDFVWDVAGATTGYAIW QMARY" gene complement(2794378..2795691) /gene="kgtP" /locus_tag="STM2654" /db_xref="GeneID:1254177" CDS complement(2794378..2795679) /gene="kgtP" /locus_tag="STM2654" /note="similar to E. coli alpha-ketoglutarate permease (AAC75640.1); Blastp hit to AAC75640.1 (432 aa), 88% identity in aa 1 - 432" /codon_start=1 /transl_table=11 /product="alpha-ketoglutarate transporter" /protein_id="NP_461589.1" /db_xref="GI:16765974" /db_xref="GeneID:1254177" /translation="MAEIIQRIDKNNAEAPEMRRRIWAIVGASSGNLVEWFDFYVYSF CSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADRRGRKASMLISVC MMCMGSLVIACLPGYDTIGTWAPALLLIARLFQGLSVGGEYGTSATYMSEVALEGRKG FFASFQYVTLIGGQLLALLVVVILQQVLDDAELRAWGWRIPFALGAVLAVVALWLRRQ LDETSKHETRALKEAGSLKGLWRNRKAFLMVLGFTAAGSLCFYTFTTYMQKYLVNTAG MHANVASGIMTAALCVFMLVQPLFGALSDKIGRRTSMLCFGALATLFTVPILSALQNV TSPYAAFALVICALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEY VALSLKSVGMESSFFWYVTAMAVLAFLVSLMLHRKGKGLRL" regulatory complement(2795686..2795691) /regulatory_class="ribosome_binding_site" /gene="kgtP" /locus_tag="STM2654" /note="putative RBS for kgtP; RegulonDB:STMS1H002746" gene complement(2795783..2796245) /locus_tag="STM2655" /db_xref="GeneID:1254178" CDS complement(2795783..2796238) /locus_tag="STM2655" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461590.1" /db_xref="GI:16765975" /db_xref="GeneID:1254178" /translation="MAIKPFNYQQDFSSIDFRQQPELYQVGRGEQGVLLVEPYKSEIL PFWRYKDEASAMKSAEQIYQLFEAYRQQDDFVGMDMARKFIQMGYTRARRYANYKGGK KYAEDGSLNTRGNDPIKAAAATVFKGWWDKIRQDEDYLKRKRQHQARWG" regulatory complement(2796240..2796245) /regulatory_class="ribosome_binding_site" /locus_tag="STM2655" /note="putative RBS for STM2655; RegulonDB:STMS1H002747" gene complement(2796443..2796564) /gene="rrfG" /locus_tag="STM2656" /db_xref="GeneID:1254179" rRNA complement(2796443..2796564) /gene="rrfG" /locus_tag="STM2656" /product="5S ribosomal RNA" /db_xref="GeneID:1254179" gene complement(2796758..2799767) /gene="rrlG" /locus_tag="STM2657" /db_xref="GeneID:1254180" rRNA complement(2796758..2799767) /gene="rrlG" /locus_tag="STM2657" /product="23S ribosomal RNA" /db_xref="GeneID:1254180" gene complement(2799961..2800033) /gene="gltW" /locus_tag="STM2658" /db_xref="GeneID:1254181" tRNA complement(2799961..2800033) /gene="gltW" /locus_tag="STM2658" /product="tRNA-Sec" /db_xref="GeneID:1254181" gene complement(2800121..2801663) /gene="rrsG" /locus_tag="STM2659" /db_xref="GeneID:1254182" rRNA complement(2800121..2801663) /gene="rrsG" /locus_tag="STM2659" /product="16S ribosomal RNA" /db_xref="GeneID:1254182" gene complement(2802119..2804700) /gene="clpB" /locus_tag="STM2660" /db_xref="GeneID:1254183" CDS complement(2802119..2804692) /gene="clpB" /locus_tag="STM2660" /note="Hsp 100; part of novel multi-chaperone system with DnaK, DnaJ, and GrpE; similar to E. coli heat shock protein (AAC75641.1); Blastp hit to AAC75641.1 (857 aa), 96% identity in aa 1 - 857" /codon_start=1 /transl_table=11 /product="ATP-dependent chaperone ClpB" /protein_id="NP_461591.1" /db_xref="GI:16765976" /db_xref="GeneID:1254183" /translation="MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGG SIRPLLTSAGINAGQLRTAIDQALSRLPQVEGTGGDVQPSSELVRVLNLCDKLAQKRG DNFISSELFVLAALESRGTLTDLLKSAGATTANITQAIEQMRGGESVNDQGAEDQRQA LKKYTVDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG LAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF IDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQ KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAID LIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELDD KERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPE LEKQLEAATQSEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLEGEREKLLRMEQEL HSRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD SDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYGRMKEM VLGVVSQNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDE ALKLLSANGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEANDDRIVAV Q" regulatory complement(2804695..2804700) /regulatory_class="ribosome_binding_site" /gene="clpB" /locus_tag="STM2660" /note="putative RBS for clpB; RegulonDB:STMS1H002750" gene complement(2804822..2805564) /gene="yfiH" /locus_tag="STM2661" /db_xref="GeneID:1254184" CDS complement(2804822..2805553) /gene="yfiH" /locus_tag="STM2661" /note="similar to E. coli orf, hypothetical protein (AAC75642.1); Blastp hit to AAC75642.1 (243 aa), 87% identity in aa 1 - 243" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461592.1" /db_xref="GI:16765977" /db_xref="GeneID:1254184" /translation="MNALIVPQWPLPKGVAACSSTRIGGVSLPPYDSLNLGAHCGDNP EHVEENRKRLFAAGNLPSKPVWLEQVHGKNVLRLTGEPYASKRADASYSNTPGTVCAV MTADCLPVLFCNREGTEVAAAHAGWRGLCEGVLEETVTCFADKPENIIAWLGPAIGPT AFEVGPEVRDAFLAKDAQADSAFLPHGEKFLADIYQLARQRLANTGVEHVYGGDRCTF SESETFFSYRRDKTTGRMASFIWLI" gene complement(2805550..2806542) /gene="rluD" /locus_tag="STM2662" /db_xref="GeneID:1254185" CDS complement(2805550..2806530) /gene="rluD" /locus_tag="STM2662" /EC_number="4.2.1.70" /note="pseudouridines 1911, 1915, 1917 in 23S RNA; similar to E. coli suppressor of ftsH mutation (AAC75643.1); Blastp hit to AAC75643.1 (326 aa), 93% identity in aa 1 - 326" /codon_start=1 /transl_table=11 /product="23S rRNA pseudouridine(1911/1915/1917) synthase" /protein_id="NP_461593.1" /db_xref="GI:16765978" /db_xref="GeneID:1254185" /translation="MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILNQR VLVNGQLCDKPKEKVLGGERVAIDAEIDEEIRFEAQDIPLDIVYEDDDILVINKPRDL VVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVE SLQLREITREYEAVAIGHMTAGGTVNEPISRHPTKRTHMSVHPMGKPAVTHYRIMEHF RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDQVYGGRPRPPKGASEEFISTLRKFDR QALHATMLRLYHPVSGIEMEWHAPIPQDMVDLIDAMRADFEDHKDDVDWL" regulatory complement(2805559..2805564) /regulatory_class="ribosome_binding_site" /gene="yfiH" /locus_tag="STM2661" /note="putative RBS for yfiH; RegulonDB:STMS1H002751" regulatory complement(2806537..2806542) /regulatory_class="ribosome_binding_site" /gene="rluD" /locus_tag="STM2662" /note="putative RBS for rluD; RegulonDB:STMS1H002752" gene 2806644..2807399 /gene="yfiO" /locus_tag="STM2663" /db_xref="GeneID:1254186" regulatory 2806644..2806649 /regulatory_class="ribosome_binding_site" /gene="yfiO" /locus_tag="STM2663" /note="putative RBS for yfiO; RegulonDB:STMS1H002753" CDS 2806662..2807399 /gene="yfiO" /locus_tag="STM2663" /note="similar to E. coli orf, hypothetical protein (AAC75644.1); Blastp hit to AAC75644.1 (245 aa), 96% identity in aa 1 - 245" /codon_start=1 /transl_table=11 /product="outer membrane protein assembly factor BamD" /protein_id="NP_461594.1" /db_xref="GI:16765979" /db_xref="GeneID:1254186" /translation="MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQ DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFMRLNPTH PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFNDFSKLVRSYPNSQYT TDATKRLVFLKDRLAKYEYSVAEYYTARGAWVAVVNRVEGMLRNYPDTQATRDALPLM ENAYRQMQLNAQADKVAKIIAANSKNT" gene 2807435..2807634 /locus_tag="STM2664" /note="pseudogene; two in-frame stops relative to E. coli b2596" /pseudo /db_xref="GeneID:1254187" gene 2807659..2808009 /gene="yfiA" /locus_tag="STM2665" /db_xref="GeneID:1254188" regulatory 2807659..2807664 /regulatory_class="ribosome_binding_site" /gene="yfiA" /locus_tag="STM2665" /note="putative RBS for yfiA; RegulonDB:STMS1H002755" CDS 2807671..2808009 /gene="yfiA" /locus_tag="STM2665" /note="stabilizes ribosomes against dissociation; similar to E. coli putative yhbH sigma 54 modulator (AAC75646.1); Blastp hit to AAC75646.1 (113 aa), 91% identity in aa 1 - 112" /codon_start=1 /transl_table=11 /product="ribosomal subunit interface protein" /protein_id="NP_461595.1" /db_xref="GI:16765980" /db_xref="GeneID:1254188" /translation="MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE PQGFIADATINTPNGHLVASAKHEDMYTAINELINKLERQLNKVQHKGEARRATASVK DASFVEAEEE" gene 2808106..2808160 /locus_tag="STM2666" /db_xref="GeneID:1254189" regulatory 2808106..2808111 /regulatory_class="ribosome_binding_site" /locus_tag="STM2666" /note="putative RBS for STM2666; RegulonDB:STMS1H002756" CDS 2808113..2808160 /locus_tag="STM2666" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_449055.1" /db_xref="GI:1109557707" /db_xref="GeneID:1254189" /translation="MKLTRFFFAFFFIFP" gene 2808249..2809420 /gene="pheA" /locus_tag="STM2667" /db_xref="GeneID:1254190" regulatory 2808249..2808254 /regulatory_class="ribosome_binding_site" /gene="pheA" /locus_tag="STM2667" /note="putative RBS for pheA; RegulonDB:STMS1H002757" CDS 2808260..2809420 /gene="pheA" /locus_tag="STM2667" /EC_number="4.2.1.51" /EC_number="5.4.99.5" /note="bifuctional; similar to E. coli chorismate mutase-P and prephenate dehydratase (AAC75648.1); Blastp hit to AAC75648.1 (386 aa), 90% identity in aa 1 - 385" /codon_start=1 /transl_table=11 /product="chorismate mutase" /protein_id="NP_461597.1" /db_xref="GI:16765982" /db_xref="GeneID:1254190" /translation="MTSENPLLALRDKISALDEELLALLAKRRALAIEVGQAKLLSHR PVRDIDRERALLDRLIHLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNNTHPH SARIAFLGPKGSYSHLAARQYAARHFEQFIESGCAKFTDIFHQVETGQADYAVVPIEN TSSGAINDVYDLLQHTSLSIVGEMTVTIDHCVLVSGATDLNTIETVYSHPQPFQQCSK FLSRYPHWKIDYTESTSAAMEKVAQANSPRVAALGSEAGGMLHGLQVLERIAANQTQN ITRFLVLARKAINVSDQVPAKTTLLIATGQQAGALVEALLVLRNHNLIMTKLESRPIH GNPWEEMFYLDIQANLESQVMQSALKELGEITRSMKVLGCYPSENVVPVEPA" gene complement(2809381..2810296) /locus_tag="STM2668" /db_xref="GeneID:1254191" CDS complement(2809381..2810289) /locus_tag="STM2668" /codon_start=1 /transl_table=11 /product="gluconolactonase" /protein_id="NP_461598.1" /db_xref="GI:16765983" /db_xref="GeneID:1254191" /translation="MTTPHVLFDYVGHLPECPTWSEDESALYWTDILEQEIHRYHPAS GTHSVLVFPEEVGCFALREQGGFIVAMRHAIWLADKNGLLQRKVCDNPSNTKLARFND GGTDGDGRFYAGTFWAPGDYNGALLMRIDHDLTAKVIQCDIQGHNGLAFSPDNQWMYT SDTPNGVIYRTLLDKHGDPGKRELFRHFGEGEGLPDGAAMDSEGCYWSAMFDGWRVAR FSPQEEQLEEYRLPVRCPTMVCFGGADMKTLFITTTRENMSAQEVADYPLSGAIFTLQ VAVAGMKKSRFIERQAGSTGTTFSLG" regulatory complement(2810291..2810296) /regulatory_class="ribosome_binding_site" /locus_tag="STM2668" /note="putative RBS for STM2668; RegulonDB:STMS1H002758" gene complement(2810347..2811477) /gene="tyrA" /locus_tag="STM2669" /db_xref="GeneID:1254192" CDS complement(2810347..2811468) /gene="tyrA" /locus_tag="STM2669" /EC_number="1.3.1.12" /EC_number="5.4.99.5" /note="bifuctional; similar to E. coli chorismate mutase-T and prephenate dehydrogenase (AAC75649.1); Blastp hit to AAC75649.1 (373 aa), 95% identity in aa 1 - 372" /codon_start=1 /transl_table=11 /product="bifunctional chorismate mutase/prephenate dehydrogenase" /protein_id="NP_461599.1" /db_xref="GI:16765984" /db_xref="GeneID:1254192" /translation="MVAELTALRDQIDDVDKALLNLLAKRLELVAKVGEVKSRFGLPI YVPEREASMLASRRAEAEAIGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPSLRPVV IVGGGGQMGRLFEKMLTLSGYQVRILEQQDWPRARDIVADAGMVIVSVPIHVTEQVIA QLPPLPSDCILVDLASVKSGPLQAMLAAHDGPVLGLHPMFGPDSGSLAKQVVVWCDGR QPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQ LLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSERNLALIKRYYKRFGDAIGLLEQG DKQAFIDSFRKVEHWFGDYARRFQNESRVLLRQANDSRP" regulatory complement(2811472..2811477) /regulatory_class="ribosome_binding_site" /gene="tyrA" /locus_tag="STM2669" /note="putative RBS for tyrA; RegulonDB:STMS1H002759" gene complement(2811478..2812684) /gene="aroF" /locus_tag="STM2670" /db_xref="GeneID:1254193" CDS complement(2811478..2812548) /gene="aroF" /locus_tag="STM2670" /EC_number="2.5.1.54" /note="DAHP synthetase; tyrosine repressible; phospho-2-dehydro-3-deoxyheptonate aldolase, tyr-sensitive. (SW:AROF_SALTY)" /codon_start=1 /transl_table=11 /product="3-deoxy-7-phosphoheptulonate synthase" /protein_id="NP_461600.1" /db_xref="GI:16765985" /db_xref="GeneID:1254193" /translation="MQKDALNNVRITDEQVLMTPEQLKAAFPLSLAQEAQIAQSRGII SDIIAGRDPRLLVVCGPCSIHDPETALEYARRFKALAAEVSDSLYLVMRVYFEKPRTT VGWKGLINDPHMDGSFDVEAGLKIARQLLVELVNMGLPLATEALDPNSPQYLGDLFSW SAIGARTTESQTHREMASGLSMPVGFKNGTDGSLATAINAMRAAAQPHRFVGINQAGQ VALLQTQGNPHGHVILRGGKAPNYSPADVAQCEKEMEQAGLRPSLMVDCSHGNSNKDY RRQPAVAESVVAQIKDGNRSIIGLMIESNIHEGNQSSEQPRSEMKYGVSVTDACISWE MTDALLREIHKDLSGQLAVRVA" protein_bind complement(2812523..2812539) /gene="aroF" /locus_tag="STM2670" /note="putative binding site for TyrR, RegulonDB: STMS1H000388" /bound_moiety="TyrR" regulatory complement(2812556..2812561) /regulatory_class="ribosome_binding_site" /gene="aroF" /locus_tag="STM2670" /note="putative RBS for aroF; RegulonDB:STMS1H002760" protein_bind complement(2812643..2812659) /gene="aroF" /locus_tag="STM2670" /note="putative binding site for TyrR, RegulonDB: STMS1H000386" /bound_moiety="TyrR" regulatory complement(2812660..2812668) /regulatory_class="minus_10_signal" /gene="aroF" /locus_tag="STM2670" /note="putative -10_signal for aroF; RegulonDB:STMLTH004559" regulatory complement(2812676..2812684) /regulatory_class="minus_35_signal" /gene="aroF" /locus_tag="STM2670" /note="putative -35_signal for aroF; RegulonDB:STMLTH004559" protein_bind complement(2812694..2812710) /note="putative binding site for TyrR, RegulonDB: STMS1H000394" /bound_moiety="TyrR" gene 2812974..2813506 /gene="yfiR" /locus_tag="STM2671" /db_xref="GeneID:1254194" regulatory 2812974..2812979 /regulatory_class="ribosome_binding_site" /gene="yfiR" /locus_tag="STM2671" /note="putative RBS for yfiR; RegulonDB:STMS1H002761" CDS 2812988..2813506 /gene="yfiR" /locus_tag="STM2671" /note="similar to E. coli orf, hypothetical protein (AAC75652.1); Blastp hit to AAC75652.1 (172 aa), 66% identity in aa 1 - 169" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461601.1" /db_xref="GI:16765986" /db_xref="GeneID:1254194" /translation="MRFSHRFILLLSLLLASLPLYAQRVTEEEKSVRAIVSGIVSYTH WPALSGPPRLCIFSSARFVRVLSEEADWAFPYQPLVIRTTQEALSARCDGFYFGNESP AYQVELTRHYPVNALLLIAEQNTECIIGSAFCLIINNDEVKFSVNLDSLSHSGVRVNP EVLMLARNQKHE" gene 2813485..2814719 /gene="yfiN" /locus_tag="STM2672" /db_xref="GeneID:1254195" regulatory 2813485..2813490 /regulatory_class="ribosome_binding_site" /gene="yfiR" /locus_tag="STM2671" /note="putative RBS for yfiN; RegulonDB:STMS1H002762" CDS 2813499..2814719 /gene="yfiN" /locus_tag="STM2672" /note="similar to E. coli orf, hypothetical protein (AAC75653.1); Blastp hit to AAC75653.1 (408 aa), 75% identity in aa 2 - 405" /codon_start=1 /transl_table=11 /product="diguanylate cyclase" /protein_id="NP_461602.1" /db_xref="GI:16765987" /db_xref="GeneID:1254195" /translation="MNKEFSLSRPTFKRTLRRISIISVLLTMTLIWLLICVASVLTLK QYAQKNLDLTAATMAHSLEAALVFSDNAAAAETLATLGRQGQFSAAEVRDKNGRTIAS WRYDARAADDKLIGLISHWLFPLPVSQPVWHNGRAIGEVRLVARDSLIGHFIWLSLAV LTGCILLASGIALLLTRYLHNGVVDALQNITEVVHDVRTNRNFSRRVPDERIAEFHLF AQDFNSLLDEMEEWQLRLQAKNAQLLRTALHDPLTGLANRAAFRSCINALMKDNSARS SSALLFLDGDNFKYINDTWGHAAGDRVLIEVAKRLAEFGGSRYQTYRLGGDEFAMVLY DVHSEYEVQRICAALSQAFNRPFELHNGQRITMTLSIGFALTWEHATAEKLQELADRN MYQAKHRRAERSLN" gene complement(2814876..2815242) /gene="rplS" /locus_tag="STM2673" /db_xref="GeneID:1254196" CDS complement(2814876..2815223) /gene="rplS" /locus_tag="STM2673" /note="50S ribosomal protein L19. (SW:RL19_SALTY)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L19" /protein_id="NP_461603.1" /db_xref="GI:16765988" /db_xref="GeneID:1254196" /translation="MSNIIKQLEQEQMKQNVPSFRPGDTVEVKVWVVEGTKKRLQAFE GVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSIAVKRRGAVRKAKLYYLRE RTGKAARIKERLN" regulatory complement(2815237..2815242) /regulatory_class="ribosome_binding_site" /gene="rplS" /locus_tag="STM2673" /note="putative RBS for rplS; RegulonDB:STMS1H002763" gene complement(2815264..2816045) /gene="trmD" /locus_tag="STM2674" /db_xref="GeneID:1254197" CDS complement(2815264..2816031) /gene="trmD" /locus_tag="STM2674" /note="tRNA (guanine-N1)-methyltransferase. (SW:TRMD_SALTY)" /codon_start=1 /transl_table=11 /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD" /protein_id="NP_461604.1" /db_xref="GI:16765989" /db_xref="GeneID:1254197" /translation="MFIGIVSLFPEMFRAITDYGVTGRAVKKGLLNIQSWSPRDFAHD RHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSEL ATNQKLILVCGRYEGVDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVL GHEASAIEDSFADGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWL RRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA" regulatory complement(2816040..2816045) /regulatory_class="ribosome_binding_site" /gene="trmD" /locus_tag="STM2674" /note="putative RBS for trmD; RegulonDB:STMS1H002764" gene complement(2816076..2816636) /gene="rimM" /locus_tag="STM2675" /db_xref="GeneID:1254198" CDS complement(2816076..2816624) /gene="rimM" /locus_tag="STM2675" /note="16S rrnA processing protein RIMM. (SW:RIMM_SALTY)" /codon_start=1 /transl_table=11 /product="ribosome maturation factor RimM" /protein_id="NP_461605.1" /db_xref="GI:16765990" /db_xref="GeneID:1254198" /translation="MSKQLAAQVPAEPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDY QPWFIQKAGQWQQVQLESWKHHNQDLIIKLKGVDDRDAANLLTNCEIVVDSSQLPALE EGDYYWKDLMGCQVVTAEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLD GQVIKKVDLATRTIEVDWDPGF" regulatory complement(2816631..2816636) /regulatory_class="ribosome_binding_site" /gene="rimM" /locus_tag="STM2675" /note="putative RBS for rimM; RegulonDB:STMS1H002765" gene complement(2816643..2816900) /gene="rpsP" /locus_tag="STM2676" /db_xref="GeneID:1254199" CDS complement(2816643..2816891) /gene="rpsP" /locus_tag="STM2676" /note="30S ribosomal protein S16. (SW:RS16_SALTY)" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S16" /protein_id="NP_461606.1" /db_xref="GI:16765991" /db_xref="GeneID:1254199" /translation="MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIAS EKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA" regulatory complement(2816895..2816900) /regulatory_class="ribosome_binding_site" /gene="rpsP" /locus_tag="STM2676" /note="putative RBS for rpsP; RegulonDB:STMS1H002766" gene complement(2817205..2818579) /gene="ffh" /locus_tag="STM2677" /db_xref="GeneID:1254200" CDS complement(2817205..2818566) /gene="ffh" /locus_tag="STM2677" /note="GTP binding export factor; part of signal recognition particle with 4.5 RNA; similar to E. coli GTP-binding export factor binds to signal sequence, GTP and RNA (AAC75659.1); Blastp hit to AAC75659.1 (453 aa), 98% identity in aa 1 - 453" /codon_start=1 /transl_table=11 /product="4.5S-RNP protein" /protein_id="NP_461607.1" /db_xref="GI:16765992" /db_xref="GeneID:1254200" /translation="MFDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVA LPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRSELVAAMGEENQTLNLAAQPPAV VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIKPVETL FVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVG EKTDALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLATKLKKGDGFDLNDF LEQLKQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTLKERAKPE IIKGSRKRRIAQGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMMPPGF PGR" regulatory complement(2818574..2818579) /regulatory_class="ribosome_binding_site" /gene="ffh" /locus_tag="STM2677" /note="putative RBS for ffh; RegulonDB:STMS1H002767" gene 2818732..2819523 /gene="corE" /locus_tag="STM2678" /db_xref="GeneID:1254201" CDS 2818732..2819523 /gene="corE" /locus_tag="STM2678" /note="heme exporter protein C; CorE (gi|4877800)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461608.1" /db_xref="GI:16765993" /db_xref="GeneID:1254201" /translation="MPVFALLALVAYSFSLALIVPGLLQKNSGWRRMAILSAVIALVC HAVALESRILPGGDSGQNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALI NLAFATFMPNEYITHLEATPGMMVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKL AFSNEMPPLMSIERKMFHITQIGVVLLTLTLCTGLFYMHNLFSTENIDKAVLSIVAWF VYIVLLWGHYHEGWRGRRVVWFNVAGAGILTLAYFGSRILQQFVS" gene 2819588..2820829 /gene="yfjD" /locus_tag="STM2679" /db_xref="GeneID:1254202" CDS 2819588..2820829 /gene="yfjD" /locus_tag="STM2679" /note="similar to E. coli putative transport protein (AAC75662.1); Blastp hit to AAC75662.1 (227 aa), 94% identity in aa 1 - 227" /codon_start=1 /transl_table=11 /product="magnesium/cobalt efflux protein" /protein_id="NP_461609.3" /db_xref="GI:1109557708" /db_xref="GeneID:1254202" /translation="MVVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKRVEKLLRKP DRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVLPKTIA ALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGSLSKEELR TIVHESRSQISRRNQDMLLSVLDLEKVSVDDIMVPRNEIIGIDINDDWKSIERQLTHS PHGRIVLYRDSLDDAISMLRVREAWRLMAEKKEFTKEMMLRAADEIYYVPEGTPLSTQ LIKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSV IIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRVRIEQYDIDILDVQ ENMIKQVKVVPVKPLRESVAE" gene 2820944..2821555 /locus_tag="STM2680" /db_xref="GeneID:1254203" regulatory 2820944..2820949 /regulatory_class="ribosome_binding_site" /locus_tag="STM2680" /note="putative RBS for STM2680; RegulonDB:STMS1H002768" CDS 2820950..2821555 /locus_tag="STM2680" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461610.1" /db_xref="GI:16765995" /db_xref="GeneID:1254203" /translation="MSEDYVIEWDKNFADDLNVVANVFLSHNPTLWPTIFSQLSTQPE IFEDEDEDEYGLQDVLDCSGGDLGNNELAQAFLQVLRGEGFIHLVDWKGEDEEGELAN FAADRFYELTKNLTDSEELRNLLVEITQEDEISDVCEAGDRYLDEIFERIQTELNKRG FQIFDLNEGSDTYNVVVLPMSEYKKIEDFNTPWLEVQDFLS" gene complement(2821590..2822192) /gene="grpE" /locus_tag="STM2681" /db_xref="GeneID:1254204" CDS complement(2821590..2822180) /gene="grpE" /locus_tag="STM2681" /note="heat shock protein; similar to E. coli phage lambda replication; host DNA synthesis; heat shock protein; protein repair (AAC75663.1); Blastp hit to AAC75663.1 (197 aa), 92% identity in aa 1 - 196" /codon_start=1 /transl_table=11 /product="HSP-70 cofactor" /protein_id="NP_461611.1" /db_xref="GI:16765996" /db_xref="GeneID:1254204" /translation="MSSKEQKTPEGQAPEEIIMDQHEEVEAVEPNDSAEQVDPRDEKI ANLEVQLAEAQTRERDTVLRIKAEMENLRRRTEQDIEKAHKFALEKFVNELLPVIDSL DRALEVADKANPDMAAMVEGIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMV ESEEVPAGNVLGIMQKGYTLNGRTIRAAMVTVAKAK" gene complement(2822177..2822375) /locus_tag="STM2682" /db_xref="GeneID:2673728" CDS complement(2822177..2822371) /locus_tag="STM2682" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_449071.1" /db_xref="GI:1109557709" /db_xref="GeneID:2673728" /translation="MCRECGGMTRMPHNADTLEMIIHFSEVLVAKIDDNVSTSLETLN LIPIISEVSEMNAKKTRRNS" regulatory complement(2822187..2822192) /regulatory_class="ribosome_binding_site" /locus_tag="STM2682" /note="putative RBS for grpE; RegulonDB:STMS1H002769" gene 2822288..2823181 /gene="yfjB" /locus_tag="STM2683" /db_xref="GeneID:1254206" regulatory 2822288..2822293 /regulatory_class="ribosome_binding_site" /gene="yfjB" /locus_tag="STM2683" /note="putative RBS for yfjB; RegulonDB:STMS1H002771" CDS 2822303..2823181 /gene="yfjB" /locus_tag="STM2683" /note="similar to E. coli orf, hypothetical protein (AAC75664.1); Blastp hit to AAC75664.1 (292 aa), 96% identity in aa 1 - 292" /codon_start=1 /transl_table=11 /product="NAD(+) kinase" /protein_id="NP_461613.1" /db_xref="GI:16765998" /db_xref="GeneID:1254206" /translation="MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIA HELQLKNVPTGTLAEIGQQADLAVVVGGDGNMLGAARTLARYDINVIGINRGNLGFLT DLDPDNALQQLSDVLEGRYISEKRFLLEAQVCQQDRQKRISTAINEVVLHPGKVAHMI EFEVYIDETFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSA RPLVINSSSTIRLRFSHRRSDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYS YFNTLSTKLGWSKKLF" regulatory complement(2822370..2822375) /regulatory_class="ribosome_binding_site" /locus_tag="STM2682" /note="putative RBS for STM2682; RegulonDB:STMS1H002770" gene 2823254..2824928 /gene="recN" /locus_tag="STM2684" /db_xref="GeneID:1254207" regulatory 2823254..2823259 /regulatory_class="ribosome_binding_site" /gene="recN" /locus_tag="STM2684" /note="putative RBS for recN; RegulonDB:STMS1H002772" CDS 2823267..2824928 /gene="recN" /locus_tag="STM2684" /note="similar to E. coli protein used in recombination and DNA repair (AAC75665.1); Blastp hit to AAC75665.1 (553 aa), 91% identity in aa 1 - 553" /codon_start=1 /transl_table=11 /product="DNA repair protein RecN" /protein_id="NP_461614.1" /db_xref="GI:16765999" /db_xref="GeneID:1254207" /translation="MLAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGL CLGGRAEADMVRTGATRADLCARFALKDTPAALRWLEENQLEEGRECLLRRVISSDGR SRGFINGTAVPLSQLRELGQLLIQIHGQHAHQQLTKPEQQKSLLDSYANEAALAQQMA ARYQLWHQSCRDLAHHQQQSQERAARAELLQYQLKELNDFNPQAGEFEQIDEEYKRLA NSGQLLTTSQNALALLADGEDVNLQSQLYSAKQLVSELVGMDSKLSGILDMLEEATIQ LTEASDELRHYCERLDLDPNRLFELEQRIAKQISLARKHHVSPEALPQLYQSLLEEQQ QLDDQADSLETLTLAVNKHHQQALETAQALHQQRQFYAQELGQLITESMHLLSMPHGL FTIDVKFDEHHLSNDGADRVEFKVTTNPGQPLQPIAKVASGGELSRIALAIQVITARK METPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE TDGAMTETHMQPLDKRARLQELARLLGGSEVTRNTLANAKELLAA" gene 2825061..2825415 /gene="smpA" /locus_tag="STM2685" /db_xref="GeneID:1254208" regulatory 2825061..2825066 /regulatory_class="ribosome_binding_site" /gene="smpA" /locus_tag="STM2685" /note="putative RBS for smpA; RegulonDB:STMS1H002773" CDS 2825077..2825415 /gene="smpA" /locus_tag="STM2685" /note="similar to E. coli small membrane protein A (AAC75666.1); Blastp hit to AAC75666.1 (50 aa), 93% identity in aa 1 - 48" /codon_start=1 /transl_table=11 /product="outer membrane protein assembly factor BamE" /protein_id="NP_461615.1" /db_xref="GI:16766000" /db_xref="GeneID:1254208" /translation="MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTPTDVA KVRVGMTQQQVAYALGTPMMTDPFGTNTWFYVFRQQPGHENVTQQTLTLTFNSSGVLT NIDNKPALTK" gene complement(2825581..2825881) /gene="yfjF" /locus_tag="STM2686" /db_xref="GeneID:1254209" CDS complement(2825581..2825871) /gene="yfjF" /locus_tag="STM2686" /note="similar to E. coli orf, hypothetical protein (AAC75667.1); Blastp hit to AAC75667.1 (102 aa), 87% identity in aa 7 - 102" /codon_start=1 /transl_table=11 /product="RnfH family protein" /protein_id="NP_461616.1" /db_xref="GI:16766001" /db_xref="GeneID:1254209" /translation="MPDKLVVEVAYALPEKQYLQRVTLEEGATVEEAIRASGLLELRT DIDLAKNKVGIYSRPVKLTDTVQDGDRVEIYRPLIADPKALRRQRAEKSAGR" gene complement(2825861..2826337) /gene="yfjG" /locus_tag="STM2687" /db_xref="GeneID:1254210" CDS complement(2825861..2826337) /gene="yfjG" /locus_tag="STM2687" /note="similar to E. coli orf, hypothetical protein (AAC75668.1); Blastp hit to AAC75668.1 (158 aa), 88% identity in aa 1 - 157" /codon_start=1 /transl_table=11 /product="ubiquinone-binding protein" /protein_id="NP_461617.1" /db_xref="GI:16766002" /db_xref="GeneID:1254210" /translation="MVLFTRFMLMGIAMPQISRTALVPYSAEQMYQLVNDVQSYPQFL PGCVGSRVLESSPAQMTAAVDVSKAGISKTFTTRNQLTRNQSILMHLVDGPFKKLIGG WKFTPLSPEACRIEFQLDFEFTNKLIELAFGRIFKELASNMVQAFTVRAKEVYRAG" regulatory complement(2825876..2825881) /regulatory_class="ribosome_binding_site" /gene="yfjF" /locus_tag="STM2686" /note="putative RBS for yfjF; RegulonDB:STMS1H002774" gene 2826477..2826969 /gene="smpB" /locus_tag="STM2688" /db_xref="GeneID:1254211" regulatory 2826477..2826482 /regulatory_class="ribosome_binding_site" /gene="smpB" /locus_tag="STM2688" /note="putative RBS for smpB; RegulonDB:STMS1H002775" CDS 2826487..2826969 /gene="smpB" /locus_tag="STM2688" /note="putative tmRNA-binding protein; SSRA-binding protein. (SW:SSRP_SALTY)" /codon_start=1 /transl_table=11 /product="SsrA-binding protein" /protein_id="NP_461618.1" /db_xref="GI:16766003" /db_xref="GeneID:1254211" /translation="MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSL RAGKANIGDSYVILKDGEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYG RINREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKNAGR " gene 2827583..2839057 /locus_tag="STM2689" /note="pseudogene; frameshift; proline/threonine-rich protein" /pseudo /db_xref="GeneID:1254212" gene 2839117..2840531 /locus_tag="STM2690" /db_xref="GeneID:1254213" regulatory 2839117..2839122 /regulatory_class="ribosome_binding_site" /locus_tag="STM2690" /note="putative RBS for STM2690; RegulonDB:STMS1H002777" CDS 2839122..2840531 /locus_tag="STM2690" /note="similar to E. coli putative resistance protein (AAC73673.1); Blastp hit to AAC73673.1 (457 aa), 24% identity in aa 67 - 450" /codon_start=1 /transl_table=11 /product="type I secretion protein TolC" /protein_id="NP_461619.1" /db_xref="GI:16766004" /db_xref="GeneID:1254213" /translation="MGRVAPVAIVLAFALFHHQPRGAEAPPMITSEGLATDQMLPSLD GSAAELPLSAAAPGNLTLNDAVNRAVNWHPSIREAIGKLLAQNEQIEVAKSKYYPQVS AGVNNGYSNTYTDHGYSPSLVLSVSQMLYDFGKVASQVRAETAGAAQQQANVLLSIDT VAHETANAIVQTQSWQQMVEAAEEQLVALDSIGKLIRQRSDEGATSLSDVVQTEARIE SARSQLAQYQANLDSAKASLMSWLGWNSLNGINNDFPAKLARSCETATPDDRLVPAVL AAWAQANVARANLDYASAQMTPTISLEPSVQHYLNDKYPSHEVLDKTQYSTWVKVEMP LYQGGGLTARRNAASHAVDAAQSTIQRTRLDVRQKLMEARSQAMSLASALQILRRQQQ LSERTRELYQQQYLDLGSRPLLDVLNAEQEVYQARFAELQTESQLHQLQLNCLYNTGA LRQAFALNHRSIQSVEIQP" gene 2840521..2842708 /locus_tag="STM2691" /db_xref="GeneID:1254214" regulatory 2840521..2840526 /regulatory_class="ribosome_binding_site" /locus_tag="STM2690" /note="putative RBS for STM2691; RegulonDB:STMS1H002778" CDS 2840528..2842708 /locus_tag="STM2691" /note="similar to E. coli ATP-binding transport protein; multicopy suppressor of htrB (AAC74000.1); Blastp hit to AAC74000.1 (582 aa), 26% identity in aa 20 - 557" /codon_start=1 /transl_table=11 /product="putative ABC transporter transmembrane region" /protein_id="NP_461620.1" /db_xref="GI:16766005" /db_xref="GeneID:1254214" /translation="MTRAAPDVEEVLSERALSQWAQAISYVAGHYRVACSPGSIQANA PWLRGKSRTTALTQLARQAGLSFHAPDIDKTAFSQWRLPLVVELRDGQLLVIEHVNGE EAVDVFVIEEEGQRNRLTLSELLPEILYVAALRPLSALKDSRVDRYISRFKPDWMREL VLQDIRPYLPVMVAAFLINVLSLAGIVFSMQVYDRVIPAQSYPTLYVLSFGVLVAVLF GFLLREARTHIMDVLGKRADMRISDRVFGHALRLRNSAIPRSTGSFISQLRELEQIRE MITSSTLATIVDLPFFFLFMIVLAIIAPPLAWIAPVAALLMILPGVALQKKLAVLANQ AAHEATLRNAVLVESVQGLEDIKLMQAENRFLQQWNSYIRITGESGLRTRKLTQGLIS WGMSVQSLVYAAVIMFGAPMVIEGSMTTGAVVAASMLGSRMIAPMANLCGVLARWQQV KAAKMGLDNIMQLPTETQHDDSLIHRDILHGHYLFENAQFRYHNDDQRIPLRLVRLEI MPGERIAILGRNGAGKSTLLQAMAGGLEMIQGDARLDNLSLSHIDMADLRRNIGFLSQ NARLFFGTLRENLTLGAPHANDEQIFDALEVSGGAVFVRRLAKGLDHPIMEGGNGLSG GQRQSLLLARMLLRSPNIVLLDEPSASLDEHTEREFIQRLHQWLGNRTLVVATHRVPI LELVERVVVLKEGQLVMDAPKAQALNADRMQSHRREWKNENQSA" gene 2842716..2843879 /locus_tag="STM2692" /db_xref="GeneID:1254215" CDS 2842716..2843879 /locus_tag="STM2692" /codon_start=1 /transl_table=11 /product="putative HlyD family secretion protein" /protein_id="NP_461621.1" /db_xref="GI:16766006" /db_xref="GeneID:1254215" /translation="MDDPDIQRERAFSGAGRIVLICSLLFLILGIWAWFGRLDEVSTG NGKVIPSSREQVLQSLDGGILAQLTVREGDRVQANQIVARLDPTRLASNVGESAAKYR ASLASSARLTAEVNDLPLAFPAELNGWPDLIAAETRLYKSRRAQLADTEAELRDALAS VNKELAITQRLEKSGAASHVEVLRLQRQKSDLGLKITDLRSQYYVQAREALSKANAEV DMLSAILKGREDSVTRLTVRSPVRGIVKNIQVTTIGGVIPPNGEMMEIVPVDDRLLIE TRLSPRDIAFIHPGQRALVKITAYDYAIYGGLDGVVETISPDTIQDKVKPEIFYYRVF IRTHQDYLQNKSGRRFSIVPGMIATVDIKTGEKTIVDYLIKPFNRAKEALRER" gene 2844217..2844316 /gene="10Sa" /locus_tag="STM2693" /db_xref="GeneID:1254216" regulatory 2844217..2844222 /regulatory_class="ribosome_binding_site" /gene="10Sa" /locus_tag="STM2693" /note="putative RBS for 10Sa; RegulonDB:STMS1H002779" tmRNA 2844222..2844316 /gene="10Sa" /locus_tag="STM2693" /product="regulatory RNA" /db_xref="GeneID:1254216" gene complement(2844431..2844666) /locus_tag="STM2694" /db_xref="GeneID:1254217" CDS complement(2844431..2844649) /locus_tag="STM2694" /note="similar to late control gene B in phage; similar to E. coli prophage P2 ogr protein (AAC75143.1); Blastp hit to AAC75143.1 (72 aa), 52% identity in aa 1 - 67" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461622.1" /db_xref="GI:16766007" /db_xref="GeneID:1254217" /translation="MMNCPECGHAAHTRSSFQVSATTKERYNQCQNINCGCTFVTHET FVRHIIKPNLISSAPPHPGKGGQGHMSF" regulatory complement(2844661..2844666) /regulatory_class="ribosome_binding_site" /locus_tag="STM2694" /note="putative RBS for STM2694; RegulonDB:STMS1H002780" gene complement(2844718..2845824) /locus_tag="STM2695" /db_xref="GeneID:1254218" CDS complement(2844718..2845818) /locus_tag="STM2695" /note="similar to late control gene in phage" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461623.1" /db_xref="GI:16766008" /db_xref="GeneID:1254218" /translation="MNFNSDLLNLNSKSPAFSITIEGKDVTTVMDARLMSLTLTDNRG FEADQLDLELDDADGQIVLPRRGAVIHLALGWKGQPLFPKGAFTVDEIEHSGAPDRLT IRARSADFRETLNTRREKSWHQTTVGEVVKEIAARHNLKVALGQDLTDKALDHMDQTN ESDASFLMKLARQYGAIASVKDGNLLFIRQGQGRTASGKPLPVITITRKAGDGHRFTL ADRGAYTGVIASWLHTREPRKKETTSVKRRRKKATTPKEPEAKQGDYLVGTDENVLVL NRTYANRSNAERAAKMQWERLQRGVASFSLQLAEGRADLYTEMPVKVTGFKQPIDDAE WTITTLTHSVSPDNGFTTSMELEVKIDDLEIE" gene complement(2845815..2846307) /locus_tag="STM2696" /db_xref="GeneID:1254219" CDS complement(2845815..2846300) /locus_tag="STM2696" /note="similar to genes in phage phiCTX" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461624.1" /db_xref="GI:16766009" /db_xref="GeneID:1254219" /translation="MMMVLGLYVFMLRTVPYQELQYQRSWRHTANSRVNRRPSTQFLG PDNDSLTLSGVLLPEVTGGRLSLLALEQMAELGKAWPLIEGSGTIYGMFVIESLSQTK TEFFASGMPRRIEFTITLKRVDESLSDMFGSLSDQLSNLQDSAASAIGGIKNTVGGLL Q" regulatory complement(2845819..2845824) /regulatory_class="ribosome_binding_site" /locus_tag="STM2696" /note="putative RBS for STM2695; RegulonDB:STMS1H002781" gene complement(2846297..2849109) /locus_tag="STM2697" /db_xref="GeneID:1254220" CDS complement(2846297..2849104) /locus_tag="STM2697" /note="similar to orfG protein in phage 186; unknown (gi|2852351)" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461625.1" /db_xref="GI:16766010" /db_xref="GeneID:1254220" /translation="MSDNNLRLQVILNAVDKLTRPFRSAQASSKELATAIQQSRARLK ELDAQAGRIDGFRKASAQLAVTGNSLKAAREEAAKLATQFSATNRPTAAQARLLEQAK NRVTELQSKYNGLRQSVQRQRLALNEAGLDTKKLSSAQRELRQNADETRQALDRQQKS LKRLGEQQARMNAVRDQYSRRLEVRDRIAGAGATTTAAGVAMGAPVVAAVKSYASMED AMKGVAKQVNGLRDDNGNRTKQFYDMQDAIKAASEQLPMENGAIDYAALVEGGARMGV TNQDDPYEEQKRDLLAFASTAAKAATAFELPADELAEGLGKIAQLYKVPTRNIEQLGD ALNYLDDNAMSKGGDIINVLQRMGGVADRLDFRKAAALGSTFLSLGAAPEIAASASNA MVRELSIATMQSKRFFEGMNLLQLNPAEIEKQMTTDAMGTIQRVLEKVNNLPQDKRLS AMTMIFGKEFGDDAAKLANNLPELQRQLKLTSGSGANGSMQKESDINKDSLSAQWLLV KTGAQNAFSSLGETLRQPLMDIMGMVKRVTGALRRWVEQNPVLAGTLMKVAAATAAIT VGLGALAVAVAAVLGPLAVIRFGLSMLSVKALPSAAAAATRTGSVLRLLISGPLALLR VALFAVGSLLGALLSPVGLVVAALAGVALVIWKYWQPISAFLGGVVEGFKAAAAPISA AFEPLRPVFQWIGDRVQALWGWFNDLLTPVKSTSEELNSAAAMGRRFGEALAEGLNMV MHPLESLKSGVSWLLEKLGIVSKEAAKAKLPAQVTQQQSATVNSDGKVVLPPGGFPAY AGMYDTGGIIPRGQFGIVGENGPEIVNGPANVTSRRRTAALASVVAGVMGVAATPAEV APLHPFSLPARTYQTQPVKADSPPSVIRYEINAPIHIVAQPGQSAQDIAREVARQLDE RERRARAKARSNFSDQGGYES" regulatory complement(2846302..2846307) /regulatory_class="ribosome_binding_site" /locus_tag="STM2696" /note="putative RBS for STM2696; RegulonDB:STMS1H002782" gene complement(2849097..2849219) /locus_tag="STM2698" /db_xref="GeneID:1254221" CDS complement(2849097..2849216) /locus_tag="STM2698" /note="similar to gpE in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461626.1" /db_xref="GI:16766011" /db_xref="GeneID:1254221" /translation="MADIATIFHWSPSITDVMPLTEVLAWRYKAIQRSGASDE" regulatory complement(2849104..2849109) /regulatory_class="ribosome_binding_site" /locus_tag="STM2698" /note="putative RBS for STM2697; RegulonDB:STMS1H002783" regulatory complement(2849214..2849219) /regulatory_class="ribosome_binding_site" /locus_tag="STM2698" /note="putative RBS for STM2698; RegulonDB:STMS1H002784" gene complement(2849231..2849540) /locus_tag="STM2699" /db_xref="GeneID:1254222" CDS complement(2849231..2849533) /locus_tag="STM2699" /note="similar to genes in P2-like phages; unknown (gi|2852350)" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461627.1" /db_xref="GI:16766012" /db_xref="GeneID:1254222" /translation="MSDKLTEKTVKLDTPIMRGKTEITEIVLRKPQSGALRGTRLQAI MDMDVGAMMTVIPRISTPTLTAQEMAELDPADLTALSVEVVTFLLKKSVLAGLPTA" regulatory complement(2849535..2849540) /regulatory_class="ribosome_binding_site" /locus_tag="STM2699" /note="putative RBS for STM2699; RegulonDB:STMS1H002785" gene complement(2849588..2850109) /locus_tag="STM2700" /db_xref="GeneID:1254223" CDS complement(2849588..2850103) /locus_tag="STM2700" /note="similar to genes in P2-like phages; unknown (gi|2852349)" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461628.1" /db_xref="GI:16766013" /db_xref="GeneID:1254223" /translation="MALPRKLKHLNLFNDGNNWQGIVESLTLPKFTRKFEKYRGGGMP GAVDVDMGLDDGALDTEFSIGGTELLLFKQMGKATVDGIQLRFTGSIQRDDTGEVQAV ELVVRGRHKEVDSGEWKTGESSSTKVSSTNSYAKLTINGEVLYEVDLVNMVEIVGGVD LMEAHRNALGL" regulatory complement(2850104..2850109) /regulatory_class="ribosome_binding_site" /locus_tag="STM2700" /note="putative RBS for STM2700; RegulonDB:STMS1H002786" gene complement(2850113..2851292) /locus_tag="STM2701" /db_xref="GeneID:1254224" CDS complement(2850113..2851285) /locus_tag="STM2701" /note="similar to tail sheath proteins in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461629.1" /db_xref="GI:16766014" /db_xref="GeneID:1254224" /translation="MAQDYHHGVRVVEINEGTRPITTVSTAIVGMVCTGDDADASVFP LNKPVLLTDVLTASGKAGESGTLARSLDAIADQAKPVTVVVRVAQGETEAETTSNIIG GVTSDGKKTGMKALLSAQSQLGVKPRILGVPGHDTQAVATELLGVAQSLRGFAYLAAN GCKTVEEAIAYRENFSQREGMLIWPDFINFDTVLKADATAYASARALGLRAKIDEQIG WHKTLSNVGVNGVTGISADVFWDLQDPATDAGLLNKNDVTTLIRKDGFRFWGSRCLSD DPLFAFENYTRTAQVLADTMAEAHMWAVDGVLNPSLARDIIEGLRAKMRSLVNQGYLI GGDCWLDESVNDKDTLKAGKLTIDYDYTPVPPLENLMLRQRITDRYLVDFASRVAA" regulatory complement(2851287..2851292) /regulatory_class="ribosome_binding_site" /locus_tag="STM2701" /note="putative RBS for STM2701; RegulonDB:STMS1H002787" gene complement(2851388..2851958) /locus_tag="STM2702" /db_xref="GeneID:1254225" CDS complement(2851388..2851945) /locus_tag="STM2702" /note="similar to te-specific recombinases; DNA invertase Pin homolog; similar to E. coli inversion of adjacent DNA; at locus of e14 element (AAC74242.1); Blastp hit to AAC74242.1 (184 aa), 88% identity in aa 3 - 180" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461630.1" /db_xref="GI:16766015" /db_xref="GeneID:1254225" /translation="MQIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPG LKKLLRTLSEGDTLVVWKLDRLGRSMRHLVVLVEELRERGINFRSLTDSIDTSTSMGR FFFHIMGALAEMERELIVERTRAGLAAARAQGRVGGRRPKLTPEQWEQAGRLLAAGET RHRVGLLFDVSISTLYKKFPVNQSR" gene 2851910..2852994 /locus_tag="STM2703" /db_xref="GeneID:1254226" regulatory 2851910..2851915 /regulatory_class="ribosome_binding_site" /locus_tag="STM2703" /note="putative RBS for STM2703; RegulonDB:STMS1H002789" CDS 2851915..2852994 /locus_tag="STM2703" /note="similar to invertase (pin) in phage E14; unknown (gi|2852344)" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461631.1" /db_xref="GI:16766016" /db_xref="GeneID:1254226" /translation="MLTPVHSQFAQQAPSQKAGIMPFTTVFCIFINLGLGETAKQAAG AVQKTGDEMSGKLTLPQTSSFGVNTNNTLGGSSIAIGDNDTGLKGNGDGNLAFMANNV LAGYFNENELQHSKKMLTKNFQALVDNNWPEGAGGFSGQLSSEAPFSVPMVHRQNNDN NFFPLLKGKVSLESGYPVAASFGILTSGNTNFPQIAIHAKTDFDVNDKIWVFDVATGE FRAPGRITATEILLSGKSRVGPDGNLYGDVWGGWLNDFLINNYNRKNTASLGDYGWVR DESTGFIMQWGTLGSSNGTYNFPREFPTSCFAVFVTNTNQQGGSVDNAFGYPVSKSQF FAATKASTDGNVVNGYPVAWFAIGR" regulatory complement(2851953..2851958) /regulatory_class="ribosome_binding_site" /locus_tag="STM2702" /note="putative RBS for STM2702; RegulonDB:STMS1H002788" gene 2852998..2853408 /locus_tag="STM2704" /db_xref="GeneID:1254227" regulatory 2852998..2853003 /regulatory_class="ribosome_binding_site" /locus_tag="STM2704" /note="putative RBS for STM2704; RegulonDB:STMS1H002790" CDS 2853001..2853408 /locus_tag="STM2704" /note="similar to genes in P2-like phages; unknown (gi|2852345)" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461632.1" /db_xref="GI:16766017" /db_xref="GeneID:1254227" /translation="MSDYYYSFKEKGFFYKPDTESGDFPTDLIPLTDEHYHGLMQGQV DGKYIEHRKGGPVLVEHREYTPEELVAQAESRKAELLAEAESVIAPLARAVKLKMATD EEIKRLEAWELYSVLVNRVDTSNPDWPDKPVSQ" gene complement(2853412..2854033) /locus_tag="STM2705" /db_xref="GeneID:1254228" CDS complement(2853412..2854029) /locus_tag="STM2705" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461633.1" /db_xref="GI:16766018" /db_xref="GeneID:1254228" /translation="MVYRTRGNGIMKKYQNIKNFRLIDDPVSRGKTQAEINIGAYFLE SEDGQDWYECQSLFSDDTAKIMYDPEGVIWGVVNHPVPQRGNTYAVSMLWPVNMSVAE IDAADCPDDCRGDGSWLYRDGKVLPVPVDYQAKAETTRQKLLNDADNAIKDWRTELTL GIISDENKAALILWMNYINVLKSLDLTDVSDEATFTAIRWPALPQ" gene complement(2853999..2855573) /locus_tag="STM2706" /db_xref="GeneID:1254229" CDS complement(2853999..2855573) /locus_tag="STM2706" /note="similar to tail fiber protein in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461634.1" /db_xref="GI:16766019" /db_xref="GeneID:1254229" /translation="MSAKFYTLLTEIGAAKLASAAALGVPLKITHMAVGDGGGVLPTP SAQQTALVAEKRRAALNMLYIDPQNSSQIIAEQVIPETEGGWWIREVGLFDETGALIA VGNCPESYKPQLTEGSGRTQTVRMVLITSSTDNITLKIDPAVVLATRKYVDDKALELK VYVDDLMAKHLAAPDPHSQYAQKDSPTLTGIPKVPTPAAGNSTKQIANTEFVASSIAA MVDSAPAALDTLNELAAALGNDPNFATTMINALAGKQPLDNTLTNLSGKDIAGLLTYL GLGETAKQAAGAVQKTGDEMSGKLTLPQTSSFGVNTNNTLGGSSIAIGDNDTGFKQNG DGILDTFANSQHTVRVAPGEMMVLGAIRAGKEKKLSLTSNNNSTMTATFNLWGDANRP TVIELDDDQGWHLYSQRNPDGSIVFTVNGDITANTLRAGGAIYQNNGDIFGSVWGNSW LSLWINNNFVADVQLGAGTSVTTWNNAGSWPNTPGYVVTSVWKDAQGENIDGINYAPL QKRVGNQWYTVQGGTA" regulatory complement(2854028..2854033) /regulatory_class="ribosome_binding_site" /locus_tag="STM2705" /note="putative RBS for STM2705; RegulonDB:STMS1H002791" gene complement(2855570..2856180) /locus_tag="STM2707" /db_xref="GeneID:1254230" CDS complement(2855570..2856175) /locus_tag="STM2707" /note="similar to tail fiber protein (gpH) in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461635.1" /db_xref="GI:16766020" /db_xref="GeneID:1254230" /translation="MNSLLPPGSSPLERRLAQTCSGISDLQVSLRDLWNPATCPIRFL PYLAWAFSVDRWDESWTESVKRRVVQDAFYIHQHKGTTSAVRRVVEPFGFLIRINEWW QTGETPGTFRLDIGVQDHGITEDTYLELERLISDAKPCSRHMTGMSINMQTSGPYWVG AASYLGEEITVYPYINETIVSGGTAHEGGAVHVIDTMRVNP" gene complement(2856168..2857084) /locus_tag="STM2708" /db_xref="GeneID:1254231" CDS complement(2856168..2857076) /locus_tag="STM2708" /note="similar to tail fiber protein (gpI) in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461636.1" /db_xref="GI:16766021" /db_xref="GeneID:1254231" /translation="MAVIDLSRLPPPQIVDVPDFETLLAERKAAFVALYPVDEQDAVR RTLALESEPVTKLLQESTYREILLRQRINEAAQAVMVAYSMGNDLEQLAANCNVKRLT VVPADNDAVPPVTAVMEDDEALRQRIPAAFEGLSVAGPTGAYEFHARSADGRVADASA TSPAPAEVVLTVLSREGDGTAVKDLLDVVEKALNSESVRPVADRLTVRSAEIIPYRVE ATIFLYPGPEAEPVMVAAKASLQRYIASQTRLGRDIRRSAIYAALHVEGVQRVELTSP LEDVVLDKTQAASCTEWSVTNGGTDE" regulatory complement(2856175..2856180) /regulatory_class="ribosome_binding_site" /locus_tag="STM2707" /note="putative RBS for STM2707; RegulonDB:STMS1H002792" gene complement(2857063..2857428) /locus_tag="STM2709" /db_xref="GeneID:1254232" CDS complement(2857063..2857422) /locus_tag="STM2709" /note="similar to gpJ; base plate of tail in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461637.1" /db_xref="GI:16766022" /db_xref="GeneID:1254232" /translation="MTLYIGMSRNDGQALADTDHLRQSVRDILLTPQGSRIARREYGS LLFALIDQPQNPALRLQIMSAVYVALNRWEPRLTLDSITINGNFDGSMVVELTGHSNN GAPVSLSISTGADNGSH" regulatory complement(2857079..2857084) /regulatory_class="ribosome_binding_site" /locus_tag="STM2709" /note="putative RBS for STM2708; RegulonDB:STMS1H002793" gene complement(2857419..2858001) /locus_tag="STM2710" /db_xref="GeneID:1254233" CDS complement(2857419..2857997) /locus_tag="STM2710" /note="similar to gpV; base plate of tail in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461638.1" /db_xref="GI:16766023" /db_xref="GeneID:1254233" /translation="MNAQLTEIMRLITNLIRTGTVTEVDRENWLCRVRVGELETNWIN WLTLRAGGARTWWCPSPDEQVVVLSMGGNLETAFALPAIYSNQFAPPSDSVDGCVTEY PDGGWFEYEPATGRWHVRGIKSMVIEAADNITLKTGEFVVEADTTRINSEVVINGGVT QGGGAMSSNGVVMDKHGHTGVKSGGDTSGGPV" regulatory complement(2857423..2857428) /regulatory_class="ribosome_binding_site" /locus_tag="STM2709" /note="putative RBS for STM2709; RegulonDB:STMS1H002794" regulatory complement(2857996..2858001) /regulatory_class="ribosome_binding_site" /locus_tag="STM2710" /note="putative RBS for STM2710; RegulonDB:STMS1H002795" gene complement(2858066..2858517) /locus_tag="STM2711" /db_xref="GeneID:1254234" CDS complement(2858066..2858512) /locus_tag="STM2711" /note="similar to gpS for completion of tail in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461639.1" /db_xref="GI:16766024" /db_xref="GeneID:1254234" /translation="MDELQKVDDWLTALLANLEPAARSRMMRQLAQQLRRTQQQNIRL QRNPDGSGYEPRRVTARSKKGRIKRQMFAKLRTTKYLKTTASADSASVQFDGKVQRIA RVHHYGLRDRVSRKGPEVRYAERRLLGVNEEVETVTRDTLLRWLAG" gene complement(2858505..2858944) /locus_tag="STM2712" /db_xref="GeneID:1254235" CDS complement(2858505..2858936) /locus_tag="STM2712" /note="similar to gpR for completion of tail in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461640.1" /db_xref="GI:16766025" /db_xref="GeneID:1254235" /translation="MNKPQSLRSALNKAVAYVRDNPDKLHLFVDNGSLVATGASSMSW EYRYTLNVVIEDFSGDQNLLMAPVLLWLSTSQPDAINNPDLREKLFTFEVDILRNDVC DISMNLQLTERVLVSTDGSVSSVEAVPEPDEPEEMWTVKRG" regulatory complement(2858512..2858517) /regulatory_class="ribosome_binding_site" /locus_tag="STM2712" /note="putative RBS for STM2711; RegulonDB:STMS1H002796" gene complement(2858899..2859190) /locus_tag="STM2713" /db_xref="GeneID:1254236" CDS complement(2858899..2859183) /locus_tag="STM2713" /note="similar to protein from phage CTX" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461641.1" /db_xref="GI:16766026" /db_xref="GeneID:1254236" /translation="MRICAAGLILLCLLTLSGCGSVRPSPEVQLTVSGCPRVTQCRLE RSAPRSNGDLNAVLDETEAAWAVCADKVDTIIACQERDSEQTAVLTQRPE" regulatory complement(2858939..2858944) /regulatory_class="ribosome_binding_site" /locus_tag="STM2713" /note="putative RBS for STM2712; RegulonDB:STMS1H002797" gene complement(2859032..2859465) /locus_tag="STM2714" /db_xref="GeneID:1254237" CDS complement(2859032..2859460) /locus_tag="STM2714" /note="similar to lysis protein (lysB) in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461642.1" /db_xref="GI:16766027" /db_xref="GeneID:1254237" /translation="MNRLLAVVLALVLAALGWQSWRLNNASHTIETQGAVLKSKTQEL TKKNSQLIGLSILTETNSREQARLYAAAEQTTALLRSRQHRIEELKRENEDLRRWADT PLPADIIRLRERPALAGGAAYREWLSQSDAVPSGKVSAAQ" regulatory complement(2859185..2859190) /regulatory_class="ribosome_binding_site" /locus_tag="STM2713" /note="putative RBS for STM2713; RegulonDB:STMS1H002798" regulatory complement(2859460..2859465) /regulatory_class="ribosome_binding_site" /locus_tag="STM2714" /note="putative RBS for STM2714; RegulonDB:STMS1H002799" gene complement(2859837..2860351) /locus_tag="STM2715" /db_xref="GeneID:1254238" CDS complement(2859837..2860346) /locus_tag="STM2715" /note="probable prophage lysozyme; similar to E. coli bacteriophage lambda lysozyme homolog (AAC73656.1); Blastp hit to AAC73656.1 (165 aa), 36% identity in aa 35 - 163" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461643.3" /db_xref="GI:1109557710" /db_xref="GeneID:1254238" /translation="MNPSIVKRCLVVAVLAIAATLPGFQSLHTSVEGLKLIADYEGCR LQPYQCSAGVWTDGIGNTSGVVPGKTITERQAAQGLITNVLRVERALDKCVVQPMPQK VYDAVVSFAFNVGTGNACSSTLVKLLNQRRWADACHQLPRWVYVKGVFNQGLDNRRAR EMTWCLKGV" gene complement(2860327..2860546) /locus_tag="STM2716" /db_xref="GeneID:1254239" CDS complement(2860327..2860542) /locus_tag="STM2716" /note="phage-holin analog protein" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461644.1" /db_xref="GI:16766029" /db_xref="GeneID:1254239" /translation="MTLERISAFITYCIAVLLAWLGDLSLKDASTVGGVLIGVLMLAI NWYYKHQSFKLLRGGKISRGEYESFNR" regulatory complement(2860346..2860351) /regulatory_class="ribosome_binding_site" /locus_tag="STM2716" /note="putative RBS for STM2715; RegulonDB:STMS1H002800" regulatory complement(2860541..2860546) /regulatory_class="ribosome_binding_site" /locus_tag="STM2716" /note="putative RBS for STM2716; RegulonDB:STMS1H002801" gene complement(2860546..2860756) /locus_tag="STM2717" /db_xref="GeneID:1254240" CDS complement(2860546..2860749) /locus_tag="STM2717" /note="similar to gpX in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461645.1" /db_xref="GI:16766030" /db_xref="GeneID:1254240" /translation="MKVRAHQYDTVDALCWRHYGRTQGVTEQVLHANPGLAEYGPFLP HGLQVELPDITASTTAQTVQLWD" gene complement(2860749..2861221) /locus_tag="STM2718" /db_xref="GeneID:1254241" CDS complement(2860749..2861213) /locus_tag="STM2718" /note="similar to gpQ in phage 186" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461646.1" /db_xref="GI:16766031" /db_xref="GeneID:1254241" /translation="MKFVAPEQAPEQAEVIKNTPFWPDVDLSEFRSVMRTDGTVTQPR LKQVVLTAISEVNAELYDFRNRQQMLGWRTLAEVPAEMLDGKSERIRHYHNAVFCWAR AVLNERYQDYDATASGVKRGEELAEASGDLWRDARWAISRVQDVPHCTVELI" regulatory complement(2860751..2860756) /regulatory_class="ribosome_binding_site" /locus_tag="STM2717" /note="putative RBS for STM2717; RegulonDB:STMS1H002802" regulatory complement(2861216..2861221) /regulatory_class="ribosome_binding_site" /locus_tag="STM2718" /note="putative RBS for STM2718; RegulonDB:STMS1H002803" gene complement(2861307..2861968) /locus_tag="STM2719" /db_xref="GeneID:1254242" CDS complement(2861307..2861960) /locus_tag="STM2719" /note="similar to gpR in phage 186" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461647.1" /db_xref="GI:16766032" /db_xref="GeneID:1254242" /translation="MSLSPARQHRLRIQAEQAAREGGSVRRHASGYDLMLLQLAEDRR RLKGIQSTVKKAEIKVELLPKYSAWAEGVLAAGGAQQDDVLMYVMLWRIDAGDYAGAL EIGRHALRHGWVMPLGNRNVQTVLAEEMADAAQSALLAAAGFDADLLLQTLDLTTDLD MPDQSRARLHKAIGAVLSESNPASALNHLTHALQLDPRCGVKKEKQQLERRLRNDSR" regulatory complement(2861963..2861968) /regulatory_class="ribosome_binding_site" /locus_tag="STM2719" /note="putative RBS for STM2719; RegulonDB:STMS1H002804" gene complement(2861964..2863052) /locus_tag="STM2720" /db_xref="GeneID:1254243" CDS complement(2861964..2863046) /locus_tag="STM2720" /note="similar to gpN; major capsid in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461648.1" /db_xref="GI:16766033" /db_xref="GeneID:1254243" /translation="MKKKTRFAFNAYLQQLARLNSVEVEELSSKFTVEPSVQQTLEDQ IQQSAAFLTLINITPVTEQSGQLLGLGVGSTIAGTTDTTTKEREPTDPTLMEDVEYKC EQTNFDTVLTYAKLDLWAKFQDFQVRIRNAIVKRQALDRIMIGFNGVKRAKTSNRAEN PLLQDVNKGWLQKIREDAPDHVMGSKTAEDGTTTAEPVKVGPGGKYVNLDAVVMDAVN ELIDVEYQDDDELVVVCGRELLSDKYFPLVNKEQDNSEKIAADMIISQKRMGGLQAVR APFFPANALLITRLDNLSIYWQEDTRRRSVIDNPKRDRIENFESVNEAYVVEDYRCAA LVENIEMSDFTPPAAPVVAAESGNGE" regulatory complement(2863047..2863052) /regulatory_class="ribosome_binding_site" /locus_tag="STM2720" /note="putative RBS for STM2720; RegulonDB:STMS1H002805" gene complement(2863063..2863902) /locus_tag="STM2721" /db_xref="GeneID:1254244" CDS complement(2863063..2863896) /locus_tag="STM2721" /note="similar to gpO; capsid scaffold in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461649.1" /db_xref="GI:16766034" /db_xref="GeneID:1254244" /translation="MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALIN LEHIKSYLPESTFNRYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKL FTSMEVSTKFADTGKAYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFS EAVETLIELEEVQDEKPSLFARVTALFTKKEQTDEARFSDVHKAVELVASEQQNLSER TDKSLSEQDKRLSELESSLQEQLAAFAELEQKLSSEDSRKDYRQRAPGGDAPAGTLTN C" regulatory complement(2863897..2863902) /regulatory_class="ribosome_binding_site" /locus_tag="STM2721" /note="putative RBS for STM2721; RegulonDB:STMS1H002806" gene 2864035..2865805 /locus_tag="STM2722" /db_xref="GeneID:1254245" regulatory 2864035..2864040 /regulatory_class="ribosome_binding_site" /locus_tag="STM2722" /note="putative RBS for STM2722; RegulonDB:STMS1H002807" CDS 2864039..2865805 /locus_tag="STM2722" /note="similar to gpP; ATP charging in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461650.1" /db_xref="GI:16766035" /db_xref="GeneID:1254245" /translation="MNTTLTPADLDPRRQAMLLYFQGYRVARIAEMLGEKVATVHSWK KRDKWGDYGPLDQMQLTTAARYCQLIMKEHKEGKDFKEIDLLARQSERHARIGKFNNG GNEADLNPNVANRNKGPRRQPEKNVFTDEQIEKLEEVFHASMFDYQRHWFEAGKTNRI RNLLKSRQIGATFYFAREALIDALLTGRNQIFLSASKAQAHVFKQYIIDFAKEVDVEL KGDPMVLPNGAALYFLGTNARTAQSYHGNLYLDEYFWIPKFQELRKVASGMAIHKKWR QTYFSTPSSLTHSAYPFWSGALFNRGRAKADKVDIDLTHSNLARGLLCPDGQYRQIVT VEDAVRGGCNLFDLDQLRMEYSPDEYQNLLMCEFIDDLASVFPLSELQACMVDSWEVW TDFQALALRPFGWREVWIGYDPAKGTQNGDSAGCVVMAPPTVPGGKFRILERHQWRGM DFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVYENVKAFFPAVREFVYNPNVKNALVL KAYDIISHRRLEFDAGHTDIAQSFMAIRRATTASGNRPTYEASRSEEASHADLAWATM HALFNEPLQGESANTSNIVEIF" gene 2865798..2866845 /locus_tag="STM2723" /db_xref="GeneID:1254246" regulatory 2865798..2865803 /regulatory_class="ribosome_binding_site" /locus_tag="STM2723" /note="putative RBS for STM2723; RegulonDB:STMS1H002808" CDS 2865805..2866845 /locus_tag="STM2723" /note="similar to gpQ; portal vector protein in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461651.1" /db_xref="GI:16766036" /db_xref="GeneID:1254246" /translation="MSELEALTSSTPTEATVPKNAGVTAEAFSFGDPIPVLDRRELLD YVECVQMDRWYEPPVSFDGLARTYRAAVHHSSPIAVKRNILTSTFIPHPLLSQQAFSR FVQDYLVFGNAYLEKRTNRLGGILSLEPSLAKYTRRGIDLDTYWFVQYGMTTQPYEFT KGSIFHLMEPDLNQEIYGLPEYLSAIPSALLNESATLFRRKYYINGSHAGFIMYMTDA AQNQEDVNNIRQAMKSAKGPGNFRNLFMYSPNGKKDGIQIIPLSEVAAKDEFLNIKNV SRDDMMAAHRVPPQMMGIIPNNTGGFGDVEKASRVFVRNELIPLQERMKEINEWIGHE VIKFKAYILEVI" gene complement(2866931..2868682) /locus_tag="STM2724" /db_xref="GeneID:1254247" CDS complement(2866931..2868682) /locus_tag="STM2724" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461652.3" /db_xref="GI:1109557711" /db_xref="GeneID:1254247" /translation="MKSSGTIRKIRHFAKGCLMHRIVKAHLDSFVKSYGIENHEEDVQ FELFCNKAMLSSRISMDFEIDDVTTGAGDDGMDGIAIIIDEELCISPEDASSIFSSQR KNHDVDIVFIQSKRSESFDLGDFLKFKASVFRFIDESPYSCLDDIQKNAHEVFDVVIK NVPKIRGGRPSFTAKYVATGIYKSPRELESARKLFIKEIEELGYFCNVSVEFVDRDEL TRTWIDTYSVVNAELPLFSNAPLPKINGIEEAYLAVVKAKDFVSNLLMTEEGSLRNHV FVENVRAFLGIDNPVNASIAETIKDRDAASRFPVLNNGITIVSPDVKLQGSILHLENF QIVNGCQTSNVLYECRDSLDDTMMVNLKVVETLNEDVFSELVRATNSQTKVDETQFYS LRPIIKKVEAYFDTYEGQDGRLYLERRERQFIGRDIPAVRVFSVHMAAKCVAAMFFRR PDLSYRYPKRMYELLAEKIFSNDTKEIVFYAACLTLYRLHLLTSNADIPQNIRKYKWH LMAVVCVLIAGKDIPKFGSKKMDIYCNKIITEMTKHGDKIKATFQRAVDIVLSIDDIT DDRMKRQAILDEMLAKI" gene complement(2868694..2868830) /locus_tag="STM2725" /note="pseudogene; in-frame stop following codon 22" /pseudo /db_xref="GeneID:1254248" gene complement(2868896..2869633) /locus_tag="STM2726" /db_xref="GeneID:1254249" CDS complement(2868896..2869627) /locus_tag="STM2726" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461653.1" /db_xref="GI:16766038" /db_xref="GeneID:1254249" /translation="MSIRYRLVFRQEKNNRLKMKINNVALTISLAVILTGCVPHASNR NITAIEVVKPAIGQSATAYMGDPIITSATGFKTDVLELGAANGALSSIAAGTYCSEGN GIYRNYHNPQAVALKNLYGQIGNYVDYVSYDAAKNEISPPNGTSYSASEISIKRVPDG LCRVSNSLVKTIEYNGNAGGVMKFTYREFANDMARAAFTTDFSVDSKGSDVIAYKGAK FKVNKADNSSISYTIISGFDKAVTF" regulatory complement(2869628..2869633) /regulatory_class="ribosome_binding_site" /locus_tag="STM2726" /note="putative RBS for STM2726; RegulonDB:STMS1H002809" gene complement(2869687..2869997) /locus_tag="STM2727" /db_xref="GeneID:1254250" CDS complement(2869687..2869992) /locus_tag="STM2727" /note="similar to protein in phage 186, and to retron in E coli; similar to E. coli damage-inducible protein I (AAC74145.1); Blastp hit to AAC74145.1 (81 aa), 29% identity in aa 1 - 77" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461654.1" /db_xref="GI:16766039" /db_xref="GeneID:1254250" /translation="MNSWQKSEPTNTTAQWMSSIEVTFMRIEIMIDKEQKISQSTLDA LESELYRNLRPLYPKTVIRIRKGSSNGVELTGLQLDEERKQVMKIMQKVWEDDSWLH" gene complement(2869931..2870126) /locus_tag="STM2728" /db_xref="GeneID:1254251" CDS complement(2869931..2870119) /locus_tag="STM2728" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461655.1" /db_xref="GI:16766040" /db_xref="GeneID:1254251" /translation="MQDYFLESLKLQRIDFFLKLVAASECSDEEKGLALQWVSELTDE LMAKIRTHEYNRSMDVIN" regulatory complement(2869992..2869997) /regulatory_class="ribosome_binding_site" /locus_tag="STM2728" /note="putative RBS for STM2727; RegulonDB:STMS1H002810" regulatory complement(2870121..2870126) /regulatory_class="ribosome_binding_site" /locus_tag="STM2728" /note="putative RBS for STM2728; RegulonDB:STMS1H002811" gene complement(2870272..2872708) /locus_tag="STM2729" /db_xref="GeneID:1254252" CDS complement(2870272..2872701) /locus_tag="STM2729" /note="similar to retron in E coli" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461656.1" /db_xref="GI:16766041" /db_xref="GeneID:1254252" /translation="MAVSKFTLHNAPTTGGSNEAAVVFPWNTPKKAVNPYLDPAEVAP ESALSNLIALYAADNEQEQLRRETLSDEVWERYFFNESRDPVQREIEQDRLISHAKTA REQQRFNPDLVIIADVGAQPAHISKPLLERIKYFHSLGRAKAYSRYLRETIRPCLERL ERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLF VSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLC ADWWCRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAVIHKREQRRKSLEFFRSHEL INEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEMRGDCAVFYTITCPSRFH ATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKTGLRWYGVRVAEPHHDGTVHW HLLCFMRKKDRRSITALLRKFAIREDREELGTNTGPRFKSELINPRKGTPTSYIAKYI SKNIDGRGLAKEISKETGRPLRDSAEHVSAWASLHRVQQFRFFGIPGRQAYRELRLLA GQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPRKHHLVRTAYE LNDEPSAYGDHGIRIYGIWSPIAEGKICTHAMKWKKVRKAVDVQEAAADQGACAPWTR GNNCPLAENLNQQEKDKSADGGTRTDITRMDDKELHDYLYSMSKKDRRELAARLRLVK PKRRKDYKQRITDHQHQQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAGLRIFYRNQR LKEDDKWRNQY" gene complement(2872692..2873556) /locus_tag="STM2730" /db_xref="GeneID:1254253" CDS complement(2872692..2873549) /locus_tag="STM2730" /EC_number="2.1.1.72" /note="similar to retron in E coli; similar to E. coli DNA adenine methylase (AAC76412.1); Blastp hit to AAC76412.1 (278 aa), 46% identity in aa 8 - 266" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461657.1" /db_xref="GI:16766042" /db_xref="GeneID:1254253" /translation="MSTILKWAGNKTAIMAELKKHLPEGPRLVEPFAGSCAVMIETDY PHYLVADINPDLINLYQVIKNDVEYFIKEGRYLFEARNDPEAYYKTRQEFNLRHGGAI ERALYFLYLNRHGYRGLCRYNLDGYFNVPYGNYKKPYFPENEIRAFAEKAKRATFICA SYDETLALLQTGDVVYCDPPYDGTFNGYHTAGFTENDQFHLASILERRSSEGHPVIVS NSDTSLTRSLYRDFTRHRITAKRSMGVAAGDSKTAVEIIATKSACWFGVDLASGPDIS VETEVRAWQ" regulatory complement(2872703..2872708) /regulatory_class="ribosome_binding_site" /locus_tag="STM2730" /note="putative RBS for STM2729; RegulonDB:STMS1H002812" gene complement(2873546..2873781) /locus_tag="STM2731" /db_xref="GeneID:1254254" CDS complement(2873546..2873773) /locus_tag="STM2731" /note="similar to protein in phage 186; similar to E. coli orf, hypothetical protein (AAC73890.1); Blastp hit to AAC73890.1 (88 aa), 42% identity in aa 9 - 76" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461658.1" /db_xref="GI:16766043" /db_xref="GeneID:1254254" /translation="MADSMDLVQQRVEEERQRHIHTARNKTPGVSRVLCIDCDAPIPP ARRRAIPGVQCCITCQEIAELKGKHYNGGAV" regulatory complement(2873551..2873556) /regulatory_class="ribosome_binding_site" /locus_tag="STM2731" /note="putative RBS for STM2730; RegulonDB:STMS1H002813" gene complement(2873773..2874014) /locus_tag="STM2732" /db_xref="GeneID:1254255" CDS complement(2873773..2874006) /locus_tag="STM2732" /note="similar to protein in phage 186" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461659.1" /db_xref="GI:16766044" /db_xref="GeneID:1254255" /translation="MRNIETRITKTGPDDAGLNQLLTDARMEERRGRADLMAARLDSL AAHIVSRQLNHTEAAELLRQEAVKIQNEAQEIH" regulatory complement(2873776..2873781) /regulatory_class="ribosome_binding_site" /locus_tag="STM2731" /note="putative RBS for STM2731; RegulonDB:STMS1H002814" regulatory complement(2874009..2874014) /regulatory_class="ribosome_binding_site" /locus_tag="STM2732" /note="putative RBS for STM2732; RegulonDB:STMS1H002815" gene complement(2874074..2874422) /locus_tag="STM2733" /db_xref="GeneID:1254256" CDS complement(2874074..2874415) /locus_tag="STM2733" /note="similar to E. coli retron Ec67" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461660.1" /db_xref="GI:16766045" /db_xref="GeneID:1254256" /translation="MAIDGPVATVPLSPGKRLDGLNHIAELRAKVFGLNIESELERFI EDMRDQRDVNNKQNERALAAIFYMAKIPAERHSVNISDLTTDEKRELIKAMNHFRAVV SLFPKRLTMPN" regulatory complement(2874417..2874422) /regulatory_class="ribosome_binding_site" /locus_tag="STM2733" /note="putative RBS for STM2733; RegulonDB:STMS1H002816" gene 2874629..2875093 /locus_tag="STM2734" /db_xref="GeneID:1254257" regulatory 2874629..2874634 /regulatory_class="ribosome_binding_site" /locus_tag="STM2734" /note="putative RBS for STM2734; RegulonDB:STMS1H002817" CDS 2874635..2875093 /locus_tag="STM2734" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461661.1" /db_xref="GI:16766046" /db_xref="GeneID:1254257" /translation="MTKQSSEYFQLHYCYYLELMTATLHGRADKLMTAIQIISGTAVI ADTGLEWVFALPVVVIATIQLVWQPAIISERASVQSRQYGELLYAGDELTPELIAQKL KTLHHSDSAPFGSLLNPAYKRAAIACGRSDDTKLSFQEKLFAWFAGCLPR" gene complement(2875041..2875281) /locus_tag="STM2735" /db_xref="GeneID:1254258" CDS complement(2875041..2875274) /locus_tag="STM2735" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461662.1" /db_xref="GI:16766047" /db_xref="GeneID:1254258" /translation="MLTREPSFASLLVKQSPAMHYGHGWIYLPCGKKWHPCIELSPRQ QAVRGIGKKRLLQRLSFNVAGILQTRRKAFPGS" regulatory complement(2875276..2875281) /regulatory_class="ribosome_binding_site" /locus_tag="STM2735" /note="putative RBS for STM2735; RegulonDB:STMS1H002818" gene complement(2875282..2875797) /locus_tag="STM2736" /db_xref="GeneID:1254259" CDS complement(2875282..2875791) /locus_tag="STM2736" /note="similar to retron in E coli and to protein cII of phages" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461663.1" /db_xref="GI:16766048" /db_xref="GeneID:1254259" /translation="MFDYKISKHPHFDEACRVFALRHNMAKLAERAGMKVQTLRNKLN PEQPHQLTPSEIWLLTDLTEDSTLVDGFLAQIHCLPCVPMNEVAKEKLPHYVMSATAE IGRIAAGAVSGDVKTTAGRRDVISSINSVTRLMALAAVSIQARLQANPAMASAVDTVT GLGASFGLI" regulatory complement(2875792..2875797) /regulatory_class="ribosome_binding_site" /locus_tag="STM2736" /note="putative RBS for STM2736; RegulonDB:STMS1H002819" gene complement(2875827..2876069) /locus_tag="STM2737" /db_xref="GeneID:1254260" CDS complement(2875827..2876066) /locus_tag="STM2737" /note="similar to protein in phage" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461664.1" /db_xref="GI:16766049" /db_xref="GeneID:1254260" /translation="MSTDISIRVPKEMATPAEFAEWEGISRGSVYQKIHHGQLAKYMV KKEKNKGRVSLRYLMYKTDQVRESLGHSNFRVIVG" regulatory complement(2876064..2876069) /regulatory_class="ribosome_binding_site" /locus_tag="STM2737" /note="putative RBS for STM2737; RegulonDB:STMS1H002820" gene 2876177..2876815 /locus_tag="STM2738" /db_xref="GeneID:1254261" regulatory 2876177..2876182 /regulatory_class="ribosome_binding_site" /locus_tag="STM2738" /note="putative RBS for STM2738; RegulonDB:STMS1H002821" CDS 2876183..2876815 /locus_tag="STM2738" /note="similar to E. coli retron" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461665.1" /db_xref="GI:16766050" /db_xref="GeneID:1254261" /translation="MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMAN RYLRDSFPAEWVIQCALETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIV APSIKHVELKNGELQPSDEILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFW LVDMDGVKSIVKIARVPGNKIVVHQDETSFECSVDDIEAIGRAVKVIKSL" gene 2876819..2877844 /locus_tag="STM2739" /db_xref="GeneID:1254262" CDS 2876819..2877844 /locus_tag="STM2739" /note="similar to int protein in phage 186; similar to E. coli prophage DLP12 integrase (AAC73638.1); Blastp hit to AAC73638.1 (387 aa), 41% identity in aa 302 - 363, 24% identity in aa 66 - 280, 35% identity in aa 19 - 50" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461666.1" /db_xref="GI:16766051" /db_xref="GeneID:1254262" /translation="MSIRKQPNGKWLCECYPNGRDGKRVRKQFATKGEAIAFENHTMD EVNKKPWLGEKEDRRHLSEVIDQWHSLYGQTLADPKRLMAKLSIICNGLGDPIASELT AGDFTKYREARLKGEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPL AGLPTFKIAEGELAFLAPEEIKRLLDACADSQSPSLLMIAKVCLATGARWSEAENLQG HQLSKYRITYTKTKGKKNRTVPISQDLYDELPKNRGKLFTPCRKAFERAVKRAGIELP EGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFAPDHLEDAVTKNPL HNLNWKR" gene 2878160..2879237 /locus_tag="STM2740" /db_xref="GeneID:1254263" regulatory 2878160..2878165 /regulatory_class="ribosome_binding_site" /locus_tag="STM2740" /note="putative RBS for STM2740; RegulonDB:STMS1H002822" CDS 2878173..2879237 /locus_tag="STM2740" /note="similar to int protein in phage CP4-57; similar to E. coli prophage CP4-57 integrase (AAC75670.1); Blastp hit to AAC75670.1 (413 aa), 47% identity in aa 1 - 341" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461667.1" /db_xref="GI:16766052" /db_xref="GeneID:1254263" /translation="MPNQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWH FEYYHPVTKKRTKTSLGPYPVVTLAMARETRTKYRRLLYQGIDPRQHLAGIAEEKRIQ NECTLEKVAEQWLKEKKRTSDLSEDHAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEH LTPLEEQGILETLRRVISRLNEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALHP SELGRLMLALQNASIRKETRCLIEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFM KMNRSHTVPLSKQALRVLQIMEPVSRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGG ELVAHGMRSRQDRRRRSFSP" gene 2879461..2880058 /locus_tag="STM2741" /db_xref="GeneID:1254264" regulatory 2879461..2879466 /regulatory_class="ribosome_binding_site" /locus_tag="STM2741" /note="putative RBS for STM2741; RegulonDB:STMS1H002823" CDS 2879465..2880058 /locus_tag="STM2741" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_461668.1" /db_xref="GI:16766053" /db_xref="GeneID:1254264" /translation="MPLLEARHLALLLLGLDASQPANALPEEHQENYRILHDAISRTI KATGMVSAPANKRMFYADEMFALAWRLIDDELTPSEVKDRSLKAVMKLSRNSRGRKWL KTLGDDALPDLTASTQPSLRGMHKRDKARENTARLCWLLVQLLVEETDGRYGTSDKPA SDQILRKLKTLAKEQELPSDGLGRGTFYEVLKMEREK" gene 2880448..2881641 /locus_tag="STM2742" /db_xref="GeneID:1254265" CDS 2880448..2881641 /locus_tag="STM2742" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461669.1" /db_xref="GI:16766054" /db_xref="GeneID:1254265" /translation="MVNYPYFSVNVLSGSINFVENDKVKLGRNDKCWCKSGLKYKKCH LDRDREMPVSKAEALKFSKSNSQRKACYAPASMHEDCDKRIVQAHTLSKSSSLKAIAD SSNHVMGVVMNLPSLIKNNGRWVPEKIGINQASTFTGFCAVHDRILFSCLENEKFTGT DEQCFALMFRSLSKEIYAKEGGRRSSDFAKNADKGKLQAEQVYIQEFVSLHQSGLNAA ITELNNLKTSLDRILLNRQFSEIESVVFTFSEPLPIAVSSILSPERDFDGTKIQDLND LTVSAEQVCFNAFSSEGKGYVVFSWLGTSAIIRRFVRSLIKVQTDRIFNTLLYFFFTK AENTYSSPEWWDSLSDKQRENIGNMIMSGVDFFDNSTLRVDHSVDYNSAALAEIRYSN SEISS" gene complement(2881976..2882803) /locus_tag="STM2743" /db_xref="GeneID:1254266" CDS complement(2881976..2882803) /locus_tag="STM2743" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461670.1" /db_xref="GI:16766055" /db_xref="GeneID:1254266" /translation="MQGLTMDDISLSIARNMFHLQVYESDGVRFEDLFSKIMYYKSPD FQQVKPYGNIGDRKNDGFIKGQGVYYQVYAPEDASNNVLAAVNKIKDDFEGLRDYWHD ICPIKKYYFVLNDKYKGSLPQLHKELIVLQSDFNLIDTGVIVAKDLERELFNLPDDMI RSVVGHLPDIDHEEYMFVSGFTCFISAWINFEKIARHKVFSAKQPNRPLFIGKVVNAL VKNKIISRQDATFIKKITEVRNSLVHGVSMLVPKKNEIDMLIFITEKIKPAGVCRLD" gene 2883247..2883469 /locus_tag="STM2744" /db_xref="GeneID:1254267" regulatory 2883247..2883252 /regulatory_class="ribosome_binding_site" /locus_tag="STM2744" /note="putative RBS for STM2744; RegulonDB:STMS1H002824" CDS 2883254..2883469 /locus_tag="STM2744" /codon_start=1 /transl_table=11 /product="AlpA family transcriptional regulator" /protein_id="NP_461671.1" /db_xref="GI:16766056" /db_xref="GeneID:1254267" /translation="MKIRADSNDAFPESGNVRMRQVVQFLAMSESSVYRLIKDTDFPR PVHLSSRLVVFDAAEIRQWQQRRTVIR" gene 2883505..2885574 /locus_tag="STM2745" /db_xref="GeneID:1254268" CDS 2883505..2885574 /locus_tag="STM2745" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461672.1" /db_xref="GI:16766057" /db_xref="GeneID:1254268" /translation="MKRAPFLCKQSPDRTLEVVILAGSLAWETSRVWRKDPDREDDVP PMVLGPNELADLSNLTIIRPDTLYVRVLRTGDISEEDLLKIAVKLAHAGVQMARLMSP DGELLENWTGQLERLRQERPSDILPDHFRLDEEALWFDKLTERRDGESDVQPQRICSP LRVTAITCDSHDGSYGRLLEWHTTTGQLRRWAMPMAMLSGNGEELRRILLENGLTNIS TRPALRSLLCEYISRSLPGRRVTCVEKTGWHNGVYVLPDEVIGPDGDNVILQGSHYLT GGFAQAGTLAEWQEQVAALCAGNSRLVFAVCCALAAPLLRLTGTGGGGFHLRGESTDG KTTVMKVAASVCGGTDYWHSWRATGNALEGIASRHNDALLPLDELREVDPREAGMIAY MLANGQGKGRARTDGEVRNRRHWTLLLFSTGELSLAEHTERAGERIYAGMDVRMVQIP SDTGQHGAFEQLHGFASGQQFADTLCDRVARFHGTAFRAWLAFLTHDQDASTTLAREL LRRYQNALMPDNAGNQVQRIVARFALLAAAGEIATLHGITGWQKGTAYEAVQICLHAW LNERGHIANQEDEGVLAQIKRFITAHQYSRFASWDGPDRPLNMAGFRRVEKDPLTGEE HTLFFILPEGWREICRGFSPARAARLCQEAECLQPGSDGKYQSQVRLPEIGKTRVYRL TSRILSI" gene 2886073..2887360 /locus_tag="STM2746" /db_xref="GeneID:1254269" regulatory 2886073..2886078 /regulatory_class="ribosome_binding_site" /locus_tag="STM2746" /note="putative RBS for STM2746; RegulonDB:STMS1H002825" CDS 2886077..2887360 /locus_tag="STM2746" /codon_start=1 /transl_table=11 /product="putative excinuclease ATPase subunit" /protein_id="NP_461673.1" /db_xref="GI:16766058" /db_xref="GeneID:1254269" /translation="MELRRISVNNLFGILNYDIDLGNSETIIITGPNGYGKTMLLKII DNILNKNIDFFFDLRFEEIKFELDTILLCIEKQKNKNVAVTVVDYVNDKKRQEVFTLN KNKELDVDYFDEIYNKLLICDNIDSDPILKSYNHEEILNYYKIKKIKLHKEKHHKSDF LDKSIPNAELTFIKAQRIENIKNEKSAIESQANFLLELIKRAAEESAQISQRLDSTFP ARLFDSINENISSTSINDRLIGIQRKRELFMKFGIIKSEDTFIPRKFSNATLGKEYST VLNLYISDALEKLSPYEELFEKINLFVNLLNEKMLAFKEIKISNEHGFYFQSDNGERI SLSNLSSGEQNQIVIYFDLIFKAKQNSVILIDEPEISLHVAWQKEFLDSIARIQKLNE FSKIIIATHSPQIVNNNWDITYDLFENNNKNMEGQ" gene 2887399..2888223 /locus_tag="STM2747" /db_xref="GeneID:1254270" regulatory 2887399..2887404 /regulatory_class="ribosome_binding_site" /locus_tag="STM2747" /note="putative RBS for STM2747; RegulonDB:STMS1H002826" CDS 2887405..2888223 /locus_tag="STM2747" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461674.1" /db_xref="GI:16766059" /db_xref="GeneID:1254270" /translation="MLLLFRSPKYSRKIFFTLEGESDIRFLNTHFADERIHYDSPCSG KPEVINAVQLLRSHGKQNVYGLCDADFDILEGNSYENIHFTDCHDLEMMLIEGGSFDK FISEFLKTSILRIHTLEDIRNNLKESIIDVTYKIGILKWLNFKNNLLLMFKGMKYDNF ITFVDFSANIDIDNYIQHILDRSPRKPPHCDFNFLKKEYQLLYNKQADYKYVCNGHDF TYITMMAFHSEFSRDKNITQEKVESHLRIAYSATAFQRTNIYNELSGLIDSHNI" gene complement(2888377..2888738) /locus_tag="STM2748" /db_xref="GeneID:1254271" CDS complement(2888377..2888733) /locus_tag="STM2748" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_461675.1" /db_xref="GI:16766060" /db_xref="GeneID:1254271" /translation="MPEDGCCPERDNSCMFRCRIAIVIGKRLKISRVRADLTQAELGA LAGLDEESASARISSYEKEVHAPDFKLVCKLAAALDVPEAYFYAVDDELAELILQYHR FKKNNPGSTLILSGNI" regulatory complement(2888733..2888738) /regulatory_class="ribosome_binding_site" /locus_tag="STM2748" /note="putative RBS for STM2748; RegulonDB:STMS1H002827" gene 2888824..2889112 /locus_tag="STM2749" /db_xref="GeneID:1254272" regulatory 2888824..2888829 /regulatory_class="ribosome_binding_site" /locus_tag="STM2749" /note="putative RBS for STM2749; RegulonDB:STMS1H002828" CDS 2888828..2889112 /locus_tag="STM2749" /note="similar to E. coli regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu (AAC76220.1); Blastp hit to AAC76220.1 (92 aa), 65% identity in aa 7 - 69" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_461676.1" /db_xref="GI:16766061" /db_xref="GeneID:1254272" /translation="MKKSTTKDWHPADIVAALHKRGTSLAKLSREAGLASSTLSNTLT RPWPKGEWLIAIALDMHPSEIWPGRYLNSSNKREPRKPLHPMTTTDNSGT" gene 2889217..2889746 /locus_tag="STM2750" /db_xref="GeneID:1254273" regulatory 2889217..2889222 /regulatory_class="ribosome_binding_site" /locus_tag="STM2750" /note="putative RBS for STM2750; RegulonDB:STMS1H002829" CDS 2889225..2889746 /locus_tag="STM2750" /EC_number="2.7.1.191" /note="similar to E. coli PTS system, glucitol/sorbitol-specific IIC component, one of two (AAC75744.1); Blastp hit to AAC75744.1 (187 aa), 40% identity in aa 9 - 162" /codon_start=1 /transl_table=11 /product="PTS sorbitol transporter subunit IIC" /protein_id="NP_461677.1" /db_xref="GI:16766062" /db_xref="GeneID:1254273" /translation="MFLVSLAEGFIHLFQAAGKIFLDMMTGLIPMLICLLLAINFLMK LVGTVRMEKVAALLGRSRILTYGVLPVLGWFFMSSPGALTLGKLLPEKSKPGYEDALG TTAHPLTSLFPHVVPSELFVWLGVAAGVKALGLPVTSLALRYIAAAMLIGLIRGIITE YLFLRLSRRGNAP" gene 2889736..2890117 /locus_tag="STM2751" /db_xref="GeneID:1254274" regulatory 2889736..2889741 /regulatory_class="ribosome_binding_site" /locus_tag="STM2751" /note="putative RBS for STM2751; RegulonDB:STMS1H002830" CDS 2889743..2890117 /locus_tag="STM2751" /EC_number="2.7.1.191" /note="similar to E. coli PTS system, glucitol/sorbitol-specific enzyme IIA component (AAC75746.1); Blastp hit to AAC75746.1 (123 aa), 41% identity in aa 3 - 107" /codon_start=1 /transl_table=11 /product="PTS sorbitol transporter" /protein_id="NP_461678.1" /db_xref="GI:16766063" /db_xref="GeneID:1254274" /translation="MMIYCARITAIGLFVADGLTDKMLITFDSNGPKDCLDYSLSLEP SFREESLMILPGDRLLLAGHDYLVTAVGKGVQQALFELGHLTLVFDGDLKPCHTGAIH LSGPVPKLHDLHGNLVIEEGRP" gene 2890106..2891094 /locus_tag="STM2752" /db_xref="GeneID:1254275" regulatory 2890106..2890111 /regulatory_class="ribosome_binding_site" /locus_tag="STM2751" /note="putative RBS for STM2752; RegulonDB:STMS1H002831" CDS 2890114..2891094 /locus_tag="STM2752" /EC_number="2.7.1.191" /note="similar to E. coli PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components (AAC75745.1); Blastp hit to AAC75745.1 (319 aa), 45% identity in aa 1 - 314" /codon_start=1 /transl_table=11 /product="PTS sorbitol transporter subunit IIB" /protein_id="NP_461679.1" /db_xref="GI:16766064" /db_xref="GeneID:1254275" /translation="MNTVLIPPGPGGYGKGLWLPVASGKKVLSLTGREIHPVAIEIGA LTESEVVNGFSDIPPDNDILCVVINCAGSLRCGLYPQKGIPTINVLPTWRAGPLAQFI SEDNYVSGVTIEQLVLVDTAEAPDGEPEPVSVTAPRIITTPPPARGAEKLVRMVERTG TAVGHVIALLFAASREAVDVSLRNVIPFMAFVSLLIALVQETALGSLIAHALTPLANS LWGLVLLSLICGIPFLSPVLGPGAAISQVIGVMIGTQIGAGAISPAFALPALFAINVQ VGCDFVPVGLSMQEAKPETIAKGVPAFLLSRQLTGPLAVIIGWLFSLGLF" gene 2891098..2892118 /locus_tag="STM2753" /db_xref="GeneID:1254276" regulatory 2891098..2891103 /regulatory_class="ribosome_binding_site" /locus_tag="STM2753" /note="putative RBS for STM2753; RegulonDB:STMS1H002832" CDS 2891105..2892118 /locus_tag="STM2753" /note="similar to E. coli putative dehydrogenase (AAC74397.1); Blastp hit to AAC74397.1 (351 aa), 30% identity in aa 10 - 151, 28% identity in aa 312 - 346" /codon_start=1 /transl_table=11 /product="putative dehydrogenase" /protein_id="NP_461680.1" /db_xref="GI:16766065" /db_xref="GeneID:1254276" /translation="MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICDTDTERCDDL AMAYGIQGYTRLDRLLQQEAIDIVSVATPDPYHTESILTALRHGQHVLAEKPLATSVR ECELIVEMAQQRDLLVGVDFHKRWDPAVMRIKAELENPETGCILRGHISMDDVITVPT QWLNWAGASSPVWFLGSHCFDLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDSVQSLL TMADGSSWGVENSWVLPEGFPKDNDGRIDILCEATYIRSTSQHRGLEITTPALTLTPN SYFINYRNGVASGFGIDPINDFVRAVRHKAPYPVTAEDGLAVSRICEAVHRSLESGKP EDV" gene 2892413..2893615 /locus_tag="STM2754" /db_xref="GeneID:1254277" CDS 2892413..2893615 /locus_tag="STM2754" /codon_start=1 /transl_table=11 /product="hexulose-6-phosphate synthase" /protein_id="NP_461681.1" /db_xref="GI:16766066" /db_xref="GeneID:1254277" /translation="MLEFHNVPLKTILRRAIMSLPTNFNDILRFFEKDYDTAKEDNAL SARGQFLQLYPLNHLKKMTLDDYVIGKGTASFCACVEVKTRTWANMQGATALKFGIYY GKSKSDPTVRYRFTQKFGDDDSTNKEVFANVKDALLDLIQSGKELDFRAIDENPLSQM FKAKILSLYFPEHFINICSKDHLKEIAMEMGIKEQQFISKYQHLLFKKKLEHKITRNW SNPKYMSFLYAQFIRKDLSSAPAVIVKKPQKRNHPEVNFEEITDNRDLIGKKSEEYAL NWEKNRLIGLGYSKLAEEIDDRRNRPTYGYDFLSFNAPGDERYIEVKSIGRDGKEGAF RFFLSGNELTVSNLSNHSKNYYFYLVQYGKDGEPCNLYVKHAQDLYTNSEMSPCAYVV RFDLEEPA" gene complement(2893689..2894331) /locus_tag="STM2755" /db_xref="GeneID:1254278" CDS complement(2893689..2894324) /locus_tag="STM2755" /EC_number="4.1.2.-" /note="similar to E. coli probable hexulose-6-phosphate synthase (AAC77153.1); Blastp hit to AAC77153.1 (216 aa), 33% identity in aa 6 - 213" /codon_start=1 /transl_table=11 /product="3-hexulose-6-phosphate synthase" /protein_id="NP_461682.1" /db_xref="GI:16766067" /db_xref="GeneID:1254278" /translation="MKLQLALDELTLPEAMVFMDKVVDDVDIIEVGTPFLIREGVNAI KAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEA GKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKA RIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLLQHH" regulatory complement(2894326..2894331) /regulatory_class="ribosome_binding_site" /locus_tag="STM2755" /note="putative RBS for STM2755; RegulonDB:STMS1H002833" gene complement(2894348..2894919) /locus_tag="STM2756" /db_xref="GeneID:1254279" CDS complement(2894348..2894911) /locus_tag="STM2756" /note="similar to E. coli orf, hypothetical protein (AAC75480.1); Blastp hit to AAC75480.1 (285 aa), 32% identity in aa 113 - 227" /codon_start=1 /transl_table=11 /product="6-phospho 3-hexuloisomerase" /protein_id="NP_461683.1" /db_xref="GI:16766068" /db_xref="GeneID:1254279" /translation="METQSVAGVACSDLNQAMSRIDGAALARLEQAIADAKAVFVFGA GRSLLMLKAFAMRLMHIGLKVHVVGDVVTPALQKGDLLLLASASGETASLVNVATKAK QLGGTVALLTIFPESTLGKLAGVAVRIPAYSDKLPDGPENVKGILPGGSLFEEAVMVL GDAMIVNLAQSTGYRLTKGFALHANLE" gene complement(2894911..2895760) /locus_tag="STM2757" /db_xref="GeneID:1254280" CDS complement(2894911..2895753) /locus_tag="STM2757" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461684.1" /db_xref="GI:16766069" /db_xref="GeneID:1254280" /translation="MKQLHHSGLPLYLDDDGVMALKPPLNYLGFGRKSAGQMAVVLPE FTEGLRNEPAYDVYRGLSFAEDQERLAADQYQYDITIIMPGTIGKERKKTSGHYHGYN DTRRNTHPEVYEVIKGTAAYILQKSPDFAAAPQELVVDDLIVAVVKEGQSIIVPPNYG HCSINIGDGPLVFSNLAYKPCTVHYDTVQFYHGMACYIVEENGQLCVRKNHYYPRVPR IKFATVKENPHLGITFDMPLYQRYRAAPERFHFLGHVDNYVREIMGMLQYEDDLFPLC QEDA" regulatory complement(2894914..2894919) /regulatory_class="ribosome_binding_site" /locus_tag="STM2756" /note="putative RBS for STM2756; RegulonDB:STMS1H002834" regulatory complement(2895755..2895760) /regulatory_class="ribosome_binding_site" /locus_tag="STM2757" /note="putative RBS for STM2757; RegulonDB:STMS1H002835" gene complement(2895883..2897432) /locus_tag="STM2758" /db_xref="GeneID:1254281" CDS complement(2895883..2897424) /locus_tag="STM2758" /EC_number="2.7.1.191" /note="similar to E. coli PTS system, glucose-specific IIBC component (AAC74185.1); Blastp hit to AAC74185.1 (477 aa), 44% identity in aa 44 - 477, 42% identity in aa 4 - 93" /codon_start=1 /transl_table=11 /product="PTS glucose transporter subunit IIABC" /protein_id="NP_461685.1" /db_xref="GI:16766070" /db_xref="GeneID:1254281" /translation="MKRFNLLQMLQSIGRSLMIPIAMLPAAGILLAFGVSFQDPNIVA SLPFLGTDGLVHVLKLMAEAGSAIFANLPLLFAVGVAVGLSDDQGIAGLSAIAGFLIM NVTIGQFLGITPESVAQVRDYTMVLGIPSLQTGVFGGIIIGIIAAWLYKRYYRIQLPS WLEFFSGKRFVPIVTSFAALFVGLVMAVVWPPVQHLINGLSNTMTVQGPGVSAFLFGF VERLLIPFGLNHVWWPTFWLQFGEYVNKAGQVVHGDQLIFFAQLKDQVPITAGTFMAG LTPIKMFCIPAIALAIYRCASPENIARVKGIMLSGAITSIVCGITEPIEFSFLFVAPV LYGIHAVLAGLVFLLMEWFSVHIGLSFSGGLIDYLFFGVLPRAPHWYMVFPVGLVMGA VYYVLFTFAIRRWNLLTPGREVEETAVAQESEQNDLVSGIILAYGGLGNMTSIEACMS RLRIDVTDKTLVDKALLKQLGAAGVVEVGNNIQSVFGMKSDRLKEAIRAIKAHPVSGH CEPIH" regulatory complement(2897427..2897432) /regulatory_class="ribosome_binding_site" /locus_tag="STM2758" /note="putative RBS for STM2758; RegulonDB:STMS1H002836" gene 2897642..2899326 /locus_tag="STM2759" /db_xref="GeneID:1254282" regulatory 2897642..2897647 /regulatory_class="ribosome_binding_site" /locus_tag="STM2759" /note="putative RBS for STM2759; RegulonDB:STMS1H002837" CDS 2897647..2899326 /locus_tag="STM2759" /note="similar to E. coli putative transport protein (AAC73180.1); Blastp hit to AAC73180.1 (551 aa), 27% identity in aa 19 - 545" /codon_start=1 /transl_table=11 /product="peptide ABC transporter substrate-binding protein" /protein_id="NP_461686.1" /db_xref="GI:16766071" /db_xref="GeneID:1254282" /translation="MSIFEAHFRRLHARYGAGQTHELQMQEIAAIFGCSVRNCRIALK KMHQEKWLDWQPQRGRGKRSRLHLLTSPEKLFSQNVNKLLEKQDYGNVLRFIGNDKYL LDRLSLWRFGVQDKSSETRVRIPYYRNLDPLNPLVPLRRTERHLLRQCLSGLTRYDAV QGRIVPDIAHYWTHNEDFTRWEFWLKSTARFADGCELDASAVQRCLLAASQSPQFAPI FSPIKTITADAPWHLVIETHHPVRRLDCLLATQPTMLFDYQHGHIRCTGAFHLQEHSD NFMVLRRNQHWHQARPGLDEITIFTWAPEHISMSFIPLLRGEEVQDDRPLNERSLEQS CCFVLLDGDGAFADEAGRRFINYLLQPVELLSQTQLPDEYARILSVAQGMLPQWNHRP VDFGGITAPFNLRQPVIISTFQQPELVELAGAIRRLLERWHIRAEIRIDAFDHFNNQL RPPADIWLSNFMLDTLSVPAFLEWLASTALFTRLPESQRQNLNALLPTILNSDDEQAF ATIAAFFHEMTHQRYVIPLLHHWMEFATEKSFTWRDLNTLGWPDFSQLWLE" gene 2900435..2901318 /locus_tag="STM2760" /db_xref="GeneID:1254283" regulatory 2900435..2900440 /regulatory_class="ribosome_binding_site" /locus_tag="STM2760" /note="putative RBS for STM2760; RegulonDB:STMS1H002838" CDS 2900443..2901318 /locus_tag="STM2760" /codon_start=1 /transl_table=11 /product="DNA-binding protein" /protein_id="NP_461687.1" /db_xref="GI:16766072" /db_xref="GeneID:1254283" /translation="MSRLAQDMKKLAHRAGGSHKTVHDREQMAQRFARHLLAQNIQVT STCQLKARHIAGYIHEWLAQGISLRTLQNEMAMVRSILAEAGRTQLSQSELISNQSLG ISGASCDGTHRAIPDALYHQVLDRVHHIDAGLAASLQLARVMGLRGQEAVQCCQSLKT WDKQLEKGAERLPVIFGTKGGRPRMTQVTDREAVRQAVKEALGIAGERNGHLIDKPDL KSAMDYWHNHLRDTGLTGEYSPHSLRYAWAQDAIRYYEEQGLSHKEALAVTSTDLGHG DGRGIYIEQVYGYTD" gene 2901484..2903358 /locus_tag="STM2761" /db_xref="GeneID:1254284" CDS 2901484..2903358 /locus_tag="STM2761" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461688.1" /db_xref="GI:16766073" /db_xref="GeneID:1254284" /translation="MKISYLKSSPSMIEVLKNNYEAFIIQNYKFNHLGLFHDEDSIYA VIQNYKESNTTLDEIQELYNYRFKTAGVPGPTFTEEVKDNYIKIDLRNTYEKVSLFGQ PFNAFEFNNNIRIAIPSKFHPFHVDMKWSDNSFTFTFNKELTPNDIDEIILICESLGF YGYKYNIKTDHELPDYNHQIKKSNTQGNLTLVASQYLRNNQPKEILEKYEEDQDFWTE KRANIFSDVNLTKDECLIDSFRKSQNRCFVDASVFPRNNIREYISLYDTVIIAIPLAD SPNSQSFYDIFKISKIELLELVRRGRIKFVAFQNLQRYDSNFLADVLSVDPECVLFSR RLAAATLLAIREKTGLFGFAFDSSTQYNLLKECYNSKVDALKILAESLSENIAFFEYG INQRGALGISQFCGASFAAQIYKSRGRDYGIELMTSAMSLEFSLGLGAHHFPFEHTGY SEVNACKILNGIYNGVQQSQNELREMEIQTLLSNIFTINNDMNVLELDDILSKYSRRM IPQILQEYAHLTPEELSFKIYSLNKDIKAIEKRKQNLSILDLSGFAPVVAGAVMEYKG LSGAGYIALLPWIFKLLKVTTNNSKIFSNEIFSNLEALTLNTPRNTMLVHKIRQDMPK " gene complement(2903618..2904901) /locus_tag="STM2762" /db_xref="GeneID:1254285" CDS complement(2903618..2904901) /locus_tag="STM2762" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461689.1" /db_xref="GI:16766074" /db_xref="GeneID:1254285" /translation="MLIIIALLWCKKDIRDSFYQLIKTFFHKQILTVLGFAVVWTSIC IVLFYEIGVWSTDNLKTTLVWVITYAFVTIFETHKIKSSKYYFKSQIKETIGLSALLT FILELQSFSFAIEFIIYPIMLFLGLLAVVANTKKETEKIGATIKVVLGVFVIFYFAHS FFVSIMSPSVTFSWANLTELLTPVLLSFSFMPFIYMLYLYQAYETKLLGLKIYFDDEA LFNYAKKLAICFFRTDLDALNRWVRNIHINEIKTKEGIKASLKDVKLRKKIESNPPEV DNKYGWSPFLAKDFLVGKGVDTNDYHFSFDTWISCSHMIEIGNDGLFRDSVAYYLYGD EYAAKKLKLRANINNSPISNCSKNTISLLAEELISKALGDDDFNINELFSKIPVMIKK DNRYVSITKEDFASQNGGYTLEVVIEIEGYSSKDH" gene 2905473..2906075 /locus_tag="STM2763" /db_xref="GeneID:2673753" regulatory 2905473..2905478 /regulatory_class="ribosome_binding_site" /locus_tag="STM2763" /note="putative RBS for STM2763; RegulonDB:STMS1H002839" CDS 2905479..2906075 /locus_tag="STM2763" /note="similar to E. coli prophage CP4-57 integrase (AAC75670.1); Blastp hit to AAC75670.1 (413 aa), 47% identity in aa 1 - 185" /codon_start=1 /transl_table=11 /product="putative integrase" /protein_id="NP_449149.1" /db_xref="GI:1109557712" /db_xref="GeneID:2673753" /translation="MAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLAKGGKK NWYFRYAVPVTKKRTKVSLGTYPHLTLAKARALRDEYLSLLANGIDPLVHNTQKANAL KDATEHTFQAVAKKWLDEKVKTSGISRDHANDIWRSLERNIFPGLGNVPINEIRPKLL KQHLDPIEQRGVLETLRRLISRLNEIFRWAATEELTRR" gene complement(2906456..2906923) /locus_tag="STM2764" /db_xref="GeneID:2673748" CDS complement(2906456..2906923) /locus_tag="STM2764" /codon_start=1 /transl_table=11 /product="putative integrase core domain protein" /protein_id="NP_449150.1" /db_xref="GI:1109557713" /db_xref="GeneID:2673748" /translation="MQAAAERYPRYGFPKLFQVLRRQGYMWNHKRIHRIYCLLKLDFR RKGKQRLPVRNPSPLATPEALNQSWSVDFMHDALVCGRRFRTFNVVDDFNREALSIEI DLNLPALRVVRVLDRIAANRGYPVMLRMDNGPEFISLALAEWAEQHAVKLEFI" gene complement(2907070..2907343) /locus_tag="STM2765" /db_xref="GeneID:1254288" CDS complement(2907070..2907336) /locus_tag="STM2765" /codon_start=1 /transl_table=11 /product="putative transposase" /protein_id="NP_461692.1" /db_xref="GI:16766077" /db_xref="GeneID:1254288" /translation="MRKARFTEHQIIAVIKSVEAGRTVKDACREAGISEATYYNWKSR YGGMEPSDIKKIKDLEDENRRLKQMFADLSLENRALKDVIEKKL" regulatory complement(2907338..2907343) /regulatory_class="ribosome_binding_site" /locus_tag="STM2765" /note="putative RBS for STM2765; RegulonDB:STMS1H002840" gene complement(2907789..2908434) /locus_tag="STM2766" /db_xref="GeneID:1254289" CDS complement(2907789..2908427) /locus_tag="STM2766" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461693.1" /db_xref="GI:16766078" /db_xref="GeneID:1254289" /translation="MSLYFFNNVPAEYLDKFCAVRDAFSNLENLLVTAEILNTCHESW NKETKDFDLLISTGTHKRILVKKTDGFFTMNLPFQVIEYESNICFNYDAYALPVNAEF ISRCRNVIATCGNGSFSYEAIAVELCDNFDRDIQQAINYCDAISSLLLVDHGYFRFDD DLKNARGKVHPRYHFDFFCNNSTNVKIGSNIRIGDTFFLDLFDVSKDRPYLT" gene complement(2908424..2910413) /locus_tag="STM2767" /db_xref="GeneID:1254290" CDS complement(2908424..2910406) /locus_tag="STM2767" /codon_start=1 /transl_table=11 /product="DNA helicase" /protein_id="NP_461694.1" /db_xref="GI:16766079" /db_xref="GeneID:1254290" /translation="MSNYCFYSQDALALAQSAGVDVIINSYAEQHKKQTYILCRPLSN EDVKYDYDRAIAVFSSGIKPFFIDFGDDDDLFEEYQEDFLEDVSYLAEKFKYRDKIGR KKSWQILFESLSRNDIDFKKLEVETKESRVIDLIISLIVGSINDTSRINLEANNLLDT IKSKIILFDTDQTKFVFQSGFGKKSVIQGLAGSGKTELLLHKLKEIYSKNPDSRIAFT CFNKILASTMRTRIPEFFDFMRVEKQIEWGTKLFCFNSWGLTKEPFSGMYRYICHYYE IPFGGFGNGDFDALCKKAIADINNSGRADKKALDYVFIDESQDFPQSFIDLCEMVTSK KLYVAGDVFQNIFMPISDNVNRADIVLKKCYRTDPKNLMFSHALGMGLYEEPVLRWLK EPEWDSCGYKYKKVGDRVHLSRDPLRRFEDIPKNHKSTAVHLLEGTDNGPDKIVDIII DIKERNPSLEQGDIAVIFLDAGGYIYEYIHSLKSKVKQQLGWDSNISHETKSKQDGKL FISNINNAKGLEFPFVICFAMKLVKRANFRNALYTMMARSFLESHLVLNNDNENPAIP TILEGLNFLNENNYMDVRLPSDEEIQSQKDFIVLDESVSISQMVKSYCADKKSTPRLI AKITDRVERIIAEDDDADGEYIKGLIEIEYERNKKL" regulatory complement(2908429..2908434) /regulatory_class="ribosome_binding_site" /locus_tag="STM2766" /note="putative RBS for STM2766; RegulonDB:STMS1H002841" gene 2910685..2911847 /locus_tag="STM2768" /note="A protein identical to WP_076612087 (IS3 family transposase ISSty2) may be translated based on programmed frameshift." /db_xref="GeneID:1254291" gene complement(2912627..2913166) /gene="fljA" /locus_tag="STM2770" /db_xref="GeneID:1254293" CDS complement(2912627..2913166) /gene="fljA" /locus_tag="STM2770" /note="flagellar synthesis; repressor of phase-1 flagellin gene. (SW:FLJA_SALTY)" /codon_start=1 /transl_table=11 /product="phase 1 flagellin transcriptional repressor" /protein_id="NP_461697.1" /db_xref="GI:16766082" /db_xref="GeneID:1254293" /translation="MECMAVNDISYGREAEIWPRDYSMLARRVQFLRFNDIPVRLVSN NARIITGYIAKFNPKENLILASDKPKGNKRIEVKLESLAILEELSGNDAFNLSLVPAD GFNLQQYTPSRRDYFSICNKCYKQGVGIKIYMKYGQVLTGKTTGVNACQVGVRTSNGN HMQVMFDWVSRITSSDYAE" gene complement(2913234..2914761) /gene="fljB" /locus_tag="STM2771" /db_xref="GeneID:1254294" CDS complement(2913234..2914754) /gene="fljB" /locus_tag="STM2771" /note="phase 2 flagellin; flagellar synthesis; phase-2 flagellin. (SW:FLJB_SALTY)" /codon_start=1 /transl_table=11 /product="flagellin" /protein_id="NP_461698.1" /db_xref="GI:16766083" /db_xref="GeneID:1254294" /translation="MAQVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDD AAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANS TNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDL KQINSQTLGLDSLNVQKAYDVKDTAVTTKAYANNGTTLDVSGLDDAAIKAATGGTNGT ASVTGGAVKFDADNNKYFVTIGGFTGADAAKNGDYEVNVATDGTVTLAAGATKTTMPA GATTKTEVQELKDTPAVVSADAKNALIAGGVDATDANGAELVKMSYTDKNGKTIEGGY ALKAGDKYYAADYDEATGAIKAKTTSYTAADGTTKTAANQLGGVDGKTEVVTIDGKTY NASKAAGHDFKAQPELAEAAAKTTENPLQKIDAALAQVDALRSDLGAVQNRFNSAITN LGNTVNNLSEARSRIEDSDYATEVSNMSRAQILQQAGTSVLAQANQVPQNVLSLLR" regulatory complement(2914756..2914761) /regulatory_class="ribosome_binding_site" /gene="fljB" /locus_tag="STM2771" /note="putative RBS for fljB; RegulonDB:STMS1H002845" gene 2914839..2915418 /gene="hin" /locus_tag="STM2772" /db_xref="GeneID:1254295" regulatory 2914839..2914844 /regulatory_class="ribosome_binding_site" /gene="hin" /locus_tag="STM2772" /note="putative RBS for hin; RegulonDB:STMS1H002846" CDS 2914846..2915418 /gene="hin" /locus_tag="STM2772" /note="regulation of flagellar gene expression by site-specific inversion of DNA; DNA-invertase hin. (SW:HIN_SALTY)" /codon_start=1 /transl_table=11 /product="DNA-invertase" /protein_id="NP_461699.1" /db_xref="GI:16766084" /db_xref="GeneID:1254295" /translation="MATIGYIRVSTIDQNIDLQRNALTSANCDRIFEDRISGKIANRP GLKRALKYVNKGDTLVVWKLDRLGRSVKNLVALISELHERGAHFHSLTDSIDTSSAMG RFFFHVMSALAEMERELIVERTLAGLAAARAQGRLGGRPRAINKHEQEQISRLLEKGH PRQQLAIIFGIGVSTLYRYFPASRIKKRMN" gene 2916374..2917496 /gene="iroB" /locus_tag="STM2773" /db_xref="GeneID:1254296" regulatory 2916374..2916379 /regulatory_class="ribosome_binding_site" /gene="iroB" /locus_tag="STM2773" /note="putative RBS for iroB; RegulonDB:STMS1H002847" CDS 2916381..2917496 /gene="iroB" /locus_tag="STM2773" /note="related to UDP-glucuronosyltransferase" /codon_start=1 /transl_table=11 /product="putative glycosyl transferase" /protein_id="NP_461700.1" /db_xref="GI:16766085" /db_xref="GeneID:1254296" /translation="MRILFVGPPLYGLLYPVLSLAQAFRVNGHEVLIASGGKFAQKAA EAGLVVFDAAPGFDSEAGYRRQEALRKENNIGTKMGNFSFFSEEMTDPLVAFAGQWRP DLIVYPPLGVVGPLIAAKYDIPVVMQTVGFGHTPWHIKGVTKSLSNAYRRHGVSAPPR DLAWIDVTPPSMSILQNDGEPVISMQYVPYNGGAVWEEWWERTPDRKRLLVSLGTVKP MVDGLDLISWVMDSAGEVDAEIILHLPANARSDLRSLPPNVRLVDWLPMGVFLNGADG FIHHGGAGNTLTALHAGIPQIVFGQGADRPVNARAVVERGCGIIPGKSGLTSSMINTF LGNRALREASQEVAAEMAAQPCPTEVAKKLIAMLQHG" gene 2917570..2921230 /gene="iroC" /locus_tag="STM2774" /db_xref="GeneID:1254297" regulatory 2917570..2917575 /regulatory_class="ribosome_binding_site" /gene="iroC" /locus_tag="STM2774" /note="putative RBS for iroC; RegulonDB:STMS1H002848" CDS 2917577..2921230 /gene="iroC" /locus_tag="STM2774" /note="similar to E. coli ATP-binding transport protein; multicopy suppressor of htrB (AAC74000.1); Blastp hit to AAC74000.1 (582 aa), 26% identity in aa 14 - 582, 29% identity in aa 34 - 565" /codon_start=1 /transl_table=11 /product="multidrug ABC transporter ATP-binding protein" /protein_id="NP_461701.1" /db_xref="GI:16766086" /db_xref="GeneID:1254297" /translation="MPATHSPMPARAWIVRLARVCWERKTLSIIVIVASVSTILLAAL TPLITRQAVNDAIAGDTTHLPLLACGLLLIALFDFIGNYVRRGYAGELSLWVQHTLRS RAFDSIQKLDGAGQDALRTGQVISRTNSDLQQVHTLLQMCPVPLAVLTYYVAGIAVML WMSPSMTLIVICVLAALAITALRARRRVFAQTGLASDRLAHMTEHMREVLEQISVVKS CVAELRETRWLDGQSRQMVRVRIGAAISQAMPGATMLALPVIGQIVLLCYGGWSVMNG RIDLGTFVAFASFLAMLTGPTRVLASFLVIAQRTQASVERVFALIDTRSRMEDGTESV EGQIIGLDVEKMSFHYDNGNRILNEISFSIHAGETVAVVGASGSGKSTLLMLLARFYD PTSGGVWLNTTAGQQNIRDLKLTALRRRVGVVFEDAFLFAGTVAENIAYGHPQATQDD IRRAADAAGASGFINALPQGFNTRLAERGSNLSGGQRQRIALARALITAPELLILDDT TSAVDAGTEAEINTALGRYADNEHMLLVIARRRSTLQLADRIVVLDKGRVVDIGTQAE LDARCPTFRSLMSGEGDFLALAPAEQRTLWPTTQAVKSDDAHERQTPAGKGFVDRMTR VPERAVQMALAGHGRQVSSLLTPVAWMFVIAALLIALDSAAGVGVLVLLQRGIDSGVA AGDMSTIGICALLALCLVAIGWCCYALQTIFAARAAESVQHTVRLRSFSHLLRLSLPW HEKHIDSRLTRMTVDVDSLARFLQNGLASAATSIVTMVAIAAAMFWLDPILALTALSA VPVVMLATWIYRRLSSPAYAQARLEIGKVNSTLQEKVSGMRVVQSHGQQQQEAARLRA LSDNFRATRVRAQKYLAVYFPFLTFCTEAAYAAVLLIGASRVAGGEMTPGILAAFFLL LGQFYGPVQQLSGIVDSWQQATASGKHINALLATEETENIEPSSITPGTGALRLEALT FLYPEKTQPVLDNLSLIIPPGTVVAVVGRSGAGKSTLIKLLAGLYSPGSGQIRVGERL IDAASLSDYRRQTGLVTQDVALFSGDIAENIRYPRPDSSDTEVESAARRAGLFETVQH LPLGFRTPVNNGGTDLSAGQRQLIALARAHLAQAHILLLDEATARIDRSAEERLMTSL TRVTHTEKRIALIVAHRLTTARRCDVIVVIDKGCIAEYGSHEQLIAAHGLYARLWRNS IGQTRDTQGEVIG" gene 2921334..2922584 /gene="iroD" /locus_tag="STM2775" /db_xref="GeneID:1254298" regulatory 2921334..2921339 /regulatory_class="ribosome_binding_site" /gene="iroD" /locus_tag="STM2775" /note="putative RBS for iroD; RegulonDB:STMS1H002849" CDS 2921340..2922584 /gene="iroD" /locus_tag="STM2775" /note="similar to E. coli enterochelin esterase (AAC73686.1); Blastp hit to AAC73686.1 (374 aa), 31% identity in aa 3 - 362" /codon_start=1 /transl_table=11 /product="enterochelin esterase" /protein_id="NP_461702.1" /db_xref="GI:16766087" /db_xref="GeneID:1254298" /translation="MRLSPPVAPVAIQTATRLRRQLAAGSQVDASHFWREANSLALPL VTAINGADDEREVTFLWRAASPLRGVYVRLNRVTDKDNVAKGMMTQLPTTDIWHLTLR LPASYCGSYTMVEIPPETPGETVLQLGSRFASLVGKADPLNSAPGINVRGNAQESVLA LDHAPAQEEWSGCRAYAGQLFTSEHRLAGQRRRVRLYLPDVPVVQPLGLLVLTDGEIW FDHLGVSAAIDAAIRSGRIAPVAVLGIDNINARERVAILGGRRELVLDIAERLLPTLR AKYPERRWADRTQTVLAGQSLGGVTALMAARHAPESFGLVLSHSPSMWWTPDNRNRPN HFSAEERSWVSEHVLSAPSPAVRTHLCVGSLEGSTVPQVKQLHEKLRAAGVESHYSVY TGGHDYAWWRGALIDGLRLLPR" gene 2922609..2923551 /gene="iroE" /locus_tag="STM2776" /db_xref="GeneID:1254299" regulatory 2922609..2922614 /regulatory_class="ribosome_binding_site" /gene="iroE" /locus_tag="STM2776" /note="putative RBS for iroE; RegulonDB:STMS1H002850" CDS 2922616..2923551 /gene="iroE" /locus_tag="STM2776" /codon_start=1 /transl_table=11 /product="hydrolase" /protein_id="NP_461703.1" /db_xref="GI:16766088" /db_xref="GeneID:1254299" /translation="MYGRQYHNKRYRMALFLVSFCFSALSYAQPDMQPLGPNIADKGS GYYHFRVNDFQSADGARHYRVWTAIPNKAAPPSGYPVLYMLDGNAVMDRLPETLLKQL ADHSPPVIVAIGYQTNLPFDLNGRAYDYTPAPGIDRDDSENNPRFHRKTGGGPAFRQL LERHIAPQVEQGITINSERRGVWGHSYGGLFVLDSWLSSSFFHIYYSASPSLSRDNFV LLNRLTTVKPSLFCHKKLIIMEGSASNGDSRQRQMAELLQKVQETVRTLENNGVNAAL QHYPGLGHGPMFNASFRSALLDISREPASQKPRCH" gene complement(2923593..2925778) /gene="iroN" /locus_tag="STM2777" /db_xref="GeneID:1254300" CDS complement(2923593..2925773) /gene="iroN" /locus_tag="STM2777" /note="similar to E. coli outer membrane receptor for ferric enterobactin (enterochelin) and colicins B and D (AAC73685.1); Blastp hit to AAC73685.1 (746 aa), 52% identity in aa 3 - 728, 44% identity in aa 245 - 746" /codon_start=1 /transl_table=11 /product="TonB-dependent siderophore receptor protein" /protein_id="NP_461704.3" /db_xref="GI:1109557714" /db_xref="GeneID:1254300" /translation="MGMRVKKFIWLITVVSTGVNSPLSAAESTDDNGETMVVESTAEQ VLKQQPGVSIITRDDIQKNPPVNDLADIIRKMPGVNLTGNSASGTRGNNRQIDIRGMG PENTLVLIDGVPVTSRNSVRYSWRGERDTRGDTNWVPPEMVERIEVIRGPAVARYGSG AAGGVVNIITKRPTNDWHGSLSLYTNQPESSKEGDTRRGNFSLSGPLAGDTLTMRLYG NLNRTDADSWDINSSAGTKNAAGREGVTNKDINSVFSWKMTPQQILDFEAGYSRQGNI YAGDTQNSTSNAVTKSLAQSGRETNRLYRQNYGLTHNGIWDWGQSRLGFYYEKTDNTR MNEGLSGGGEGRITNDQTFTTNRLTSYRTSGEVNVPVIWLFEQTLTVGAEWNRDELND PSSTSLTVKDSNIAGIPGSAANRSSKNKSEISALYVEDNIEPMAGTNIIPGLRFDYLS ESGSNFSPSLNLSQELGEYVKVKAGIARAFKAPNLYQTSEGYLLYSKGNGCPKDITSG GCYLVGNKNLDPEISINKEIGLEFTVDDYHASVTYFRNDYQNKIVAGDQIIGRSASGA YVLQWQNGGKALIEGIEASMAVPLMPDRLNWNTNATYMIASEQKDTGNPLSIIPKYTV NTFLDWTITSALSANVNWTLYGKQKPRTHAESRSEETKGLSGKALGAYSLVGANVNYD INKNLRLNVGISNIFDKQIYRSAEGANTYNEPGRAYYAGVTASF" regulatory complement(2925773..2925778) /regulatory_class="ribosome_binding_site" /gene="iroN" /locus_tag="STM2777" /note="putative RBS for iroN; RegulonDB:STMS1H002851" gene 2926098..2926412 /locus_tag="STM2778" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1254301" gene complement(2926299..2926631) /locus_tag="STM2779" /db_xref="GeneID:1254302" CDS complement(2926299..2926631) /locus_tag="STM2779" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_449164.1" /db_xref="GI:1109557715" /db_xref="GeneID:1254302" /translation="MFEKENAMPGCISACSCVVSSTPPDPKAPPKPKWIELKGYCVTC TSQEDIRPPKEGEPKQKMTPRDLVLLRGLLKDLGVTQNPWQDPTVKPNNCGLPYFPVV PGERETDV" gene complement(2926806..2927863) /locus_tag="STM2780" /db_xref="GeneID:1254303" CDS complement(2926806..2927858) /locus_tag="STM2780" /note="putative pentapeptide repeats (8 copies); similar to E. coli orf, hypothetical protein (AAC77036.1); Blastp hit to AAC77036.1 (430 aa), 25% identity in aa 148 - 306, 26% identity in aa 145 - 259, 22% identity in aa 152 - 348, 23% identity in aa 238 - 412" /codon_start=1 /transl_table=11 /product="effector protein PipB" /protein_id="NP_461706.1" /db_xref="GI:16766091" /db_xref="GeneID:1254303" /translation="MERSLDSLAGMAKSAFGAGTSAAMRQATSPKTILEYIINFFTCG GIRRRNETQYQELIETMAETLKSTMPDRGAPLPENIILDDMDGCRVEFNLPGENNEAG QVIVRVSKGDHSETREIPLASFEKICRALLFRCEFSLPQDSVILTAQGGMNLKGAVLT GANLTSENLCDADLSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSI MCGATLDHANLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQG ATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDCTLTDLRTEDATM STSTQTLFNEFYSENI" regulatory complement(2927858..2927863) /regulatory_class="ribosome_binding_site" /locus_tag="STM2780" /note="putative RBS for STM2780; RegulonDB:STMS1H002853" gene 2928377..2929306 /gene="virK" /locus_tag="STM2781" /db_xref="GeneID:1254304" CDS 2928377..2929306 /gene="virK" /locus_tag="STM2781" /note="similar to virK in Shigella; virulence gene; similar to E. coli putative enzyme (AAC73964.1); Blastp hit to AAC73964.1 (330 aa), 39% identity in aa 47 - 329" /codon_start=1 /transl_table=11 /product="VirG localization protein VirK" /protein_id="NP_461707.1" /db_xref="GI:16766092" /db_xref="GeneID:1254304" /translation="MTMQQSDMERYNPLLMLKEVMAQTPYRHKRWGERKFRYKFLLRC LINPVTTIKYFNELCHLSQPRTLIIHRPLLPAKIQRPYLYTGLSIRCRAKAILEHYQF VQSFPESKIKKILLSEEQILLAHLEGKNGALVDIYCGPCGYDREGELTLTLCFNDTPL ARLSFSFIRHEGKQIALVAGLQGPSKHIGPQVIRNATKDCYGLFPKRMLYEAFATLMQ ACNVDEIYAVSENNHVYRQLRYLFQKKKTFVASYSEFWESLNGVKKGALYHLPSQVMR KAPESIPSKKRAEYRKRYHILDTIIQEVNSLSR" gene 2929591..2930495 /gene="mig-14" /locus_tag="STM2782" /db_xref="GeneID:1254305" regulatory 2929591..2929596 /regulatory_class="ribosome_binding_site" /gene="mig-14" /locus_tag="STM2782" /note="putative RBS for mig-14; RegulonDB:STMS1H002854" CDS 2929599..2930495 /gene="mig-14" /locus_tag="STM2782" /codon_start=1 /transl_table=11 /product="antimicrobial resistance protein Mig-14" /protein_id="NP_461708.1" /db_xref="GI:16766093" /db_xref="GeneID:1254305" /translation="MKIQEVKRILTRWQPSSFSLYREVFTQYGGSINMHPDIVDYFMK RYNWHFKFFHYKEDDKIKGAYFICNDQNIGILTRRTFPLSSDEILIPMAPDLRCFLPD RTNRLSALHQPQIRNAIWKLARKKQNCLVKETFSSKFEKTRRNEYQRFLKKGGSVKSV ADCSSDELTHIFIELFRSRFGNTSSCYPADNLANFFSQLHHLLFGHILYIEGIPCAFD IVLKSESQMNIYFDVSNGAIKNECRPLSPGSILMWLNISRARHYCQERQKKLLFSIGI LKPEWEYKRMWSTPYFTGKSIC" gene complement(2931217..2932237) /gene="nxiA" /locus_tag="STM2783" /db_xref="GeneID:1254306" CDS complement(2931217..2932230) /gene="nxiA" /locus_tag="STM2783" /codon_start=1 /transl_table=11 /product="putative nickel transporter" /protein_id="NP_461709.1" /db_xref="GI:16766094" /db_xref="GeneID:1254306" /translation="MNNHTKRRGIALTVFLVGVNILAWIWAFCVFHHHAVMLSAAILA YSFGLRHAVDADHIAAIDTVTRKLMQQGKTPLGVGAFFSLGHSTIVVLACLAIVVTSM AFRDRIDVLHQYGSLIGTAVSAFFLLAMALLNLFILFNVWRQFRSVTRGESVRAHDEA IPGGLMTRIFQRTFRLVTSSWHMYFVGFLFGLGFDTATEVGLLGISASAANQGLSLWS MMIFPVLFTAGMALVDSLDNFVMVGAYGWAFSHPLRKLYYNMTITAASVIVALAIGGL EALGLIDDALQLSGTFWQTVSTLNDHMGNVGFWVVGAFVLFWLLSVLNYRWRGYDKIT LNT" regulatory complement(2932232..2932237) /regulatory_class="ribosome_binding_site" /gene="nxiA" /locus_tag="STM2783" /note="putative RBS for nxiA; RegulonDB:STMS1H002855" gene complement(2932363..2933785) /gene="tctE" /locus_tag="STM2784" /db_xref="GeneID:1254307" CDS complement(2932363..2933778) /gene="tctE" /locus_tag="STM2784" /EC_number="2.7.3.-" /note="similar to E. coli putative 2-component sensor protein (AAC76062.1); Blastp hit to AAC76062.1 (449 aa), 30% identity in aa 160 - 447, 29% identity in aa 1 - 56" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="NP_461710.1" /db_xref="GI:16766095" /db_xref="GeneID:1254307" /translation="MKWVKPQSLYLQLLLFLGLPLILLWGLSAFNSYVNALQAATQAY DRTLLSSARTVSERLVVRNNHLEVNVPWVVLDSFELNMNDRLYYKVVDPSGKVISGYD DLPVMPPATPRTRLYPALAWFYHTEYRGEAIRVARLLQPVNEGGIIGMAEIYVAETLQ SRRYLAGQLLFSSWISQGLLVLLTLVLVGWLLRRILRPMRQLSSLMVRREPGLLTPLP ELLPWSETRLLIVAFNRYIDRLRGILSRQERFSADASHQLKTPLAVLKTQAAVALASQ HPHHWYESLQAMSVTLDSTIQLTERLLQLSAVKHKEQGERRFSPVNLYDIVQSGCFTR LAQARSKHIDLGYEGEQEAMWIEGDEVLLSELCGNLLDNALKYTPEQGIVTARLERDG DAVTLVVEDSGPGIDDEHIHLALQPFHRLDNVGNVAGAGIGLALVNDIARLHRTHPHF SRSEALGGLYVRIRFLSLVPQ" gene complement(2933765..2934446) /gene="tctD" /locus_tag="STM2785" /db_xref="GeneID:1254308" CDS complement(2933765..2934439) /gene="tctD" /locus_tag="STM2785" /note="transcriptional regulatory protein TCTD. (SW:TCTD_SALTY)" /codon_start=1 /transl_table=11 /product="DNA-binding response regulator" /protein_id="NP_461711.1" /db_xref="GI:16766096" /db_xref="GeneID:1254308" /translation="MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEM YALAVLDINMPGMDGLEVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKP FELEELDARLRALLRRSAGQVHEVQQLGELIFHDEGYFLLQGQPLALTPREQALLTVL MYRRTRPVSRQQLFEQVFSLNDEVSPESIELYIHRLRKKLQGSDVRITTLRGLGYVLE RGDEVG" regulatory complement(2933780..2933785) /regulatory_class="ribosome_binding_site" /gene="tctD" /locus_tag="STM2785" /note="putative RBS for tctE; RegulonDB:STMS1H002856" regulatory complement(2934441..2934446) /regulatory_class="ribosome_binding_site" /gene="tctD" /locus_tag="STM2785" /note="putative RBS for tctD; RegulonDB:STMS1H002857" gene 2934587..2935571 /locus_tag="STM2786" /db_xref="GeneID:1254309" regulatory 2934587..2934592 /regulatory_class="ribosome_binding_site" /locus_tag="STM2786" /note="putative RBS for STM2786; RegulonDB:STMS1H002858" CDS 2934594..2935571 /locus_tag="STM2786" /codon_start=1 /transl_table=11 /product="tricarboxylic transporter" /protein_id="NP_461712.1" /db_xref="GI:16766097" /db_xref="GeneID:1254309" /translation="MKKQLLRTLTASILLMSTSVLAQEAPSRTECIAPAKPGGGFDLT CKLIQVSLLETGAIEKPMRVTYMPGGVGAVAYNAIVAQRPGEPGTVVAFSGGSLLNLS QGKFGRYGVDDVRWLASVGTDYGMIAVRADSPWKTLKDLMTAMEKDPNSVVIGAGASI GSQDWMKSALLAQKANVDPHKMRYVAFEGGGEPVTALMGNHVQVVSGDLSEMVPYLGG DKIRVLAVFSENRLPGQLANIPTAKEQGYDLVWPIIRGFYVGPKVSDADYQWWVDTFK KLQQTDEFKKQRDLRGLFEFDMTGQQLDDYVKKQVTDYREQAKAFGLAK" gene 2935577..2936017 /locus_tag="STM2787" /db_xref="GeneID:1254310" regulatory 2935577..2935582 /regulatory_class="ribosome_binding_site" /locus_tag="STM2787" /note="putative RBS for STM2787; RegulonDB:STMS1H002859" CDS 2935583..2936017 /locus_tag="STM2787" /codon_start=1 /transl_table=11 /product="tricarboxylic transport protein" /protein_id="NP_461713.3" /db_xref="GI:1109557716" /db_xref="GeneID:1254310" /translation="MMSDRIFAGIWLLLCIAGLFIAWQIQSEYSYEPVGPRPFPLGII GLMALCALALLLRHPDTVSWPRRHVLQKLITMIIILLMYAWGFEWLGFPIATALLTMV IGMLFGATIPAAGISGAVLGILLWYAFDRLLDVTLPLGAWLS" gene 2936022..2937542 /locus_tag="STM2788" /db_xref="GeneID:1254311" regulatory 2936022..2936027 /regulatory_class="ribosome_binding_site" /locus_tag="STM2788" /note="putative RBS for STM2788; RegulonDB:STMS1H002860" CDS 2936028..2937542 /locus_tag="STM2788" /codon_start=1 /transl_table=11 /product="tripartite tricarboxylate transporter TctA" /protein_id="NP_461714.1" /db_xref="GI:16766099" /db_xref="GeneID:1254311" /translation="MDTWIYLSQGFAVAMTPENLVIALIGCFVGTIVGLLPGLGPING VAILLPLAFALHLPAESALILLATVYIGCEYGGRISSILLNVPGDAAAIMTALDGYPM AQQGKGGVALSISAVSSFFGSLIAIGGIILFAPLLAQWSLAFGPAEYFALMVFAIACL GSMMAQNPLKSFLAALIGLGLATVGVDANTGVYRFTFDSVHLSDGVQFIVVVIGLFSV SEILLMLEHTSSGQTMVRKTGRMLFNLKEGAQCIGTTLRSSVIGFFVGVLPGAGATIA SAITYMTEKKLSGNSDSFGKGDIRGVAAPEAANNASACGSFIPMLTLGVPGSGTTAVM MGALTLYNITPGPAMFTEQPDIVWGLIAALLIANVMLLIMNIPLIGLFTRMLTIPLWF LVPAIAAVSAVGVYAVHSTTFDLVLMVALGVLGYILRKMHFPMSPLILGFVLGEMLEQ NLRRALSISNGNMAILWQSGVAKALLIMAIMVIVVPPVLRLLRKHSRKPQVDAG" gene 2937829..2938822 /locus_tag="STM2789" /db_xref="GeneID:1254312" regulatory 2937829..2937834 /regulatory_class="ribosome_binding_site" /locus_tag="STM2789" /note="putative RBS for STM2789; RegulonDB:STMS1H002861" CDS 2937836..2938822 /locus_tag="STM2789" /note="similar to E. coli orf, hypothetical protein (AAC75706.1); Blastp hit to AAC75706.1 (360 aa), 86% identity in aa 34 - 360" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461715.3" /db_xref="GI:1109557717" /db_xref="GeneID:1254312" /translation="MILMNALTAVKANTDDLAQRHTGFTLAPSAQSPRLLALTFTADT TKQFLHQVAQWPVQALEYKSFLRFKIGKILDDLCGNQLQPLLIKTLLNRAQGALLISA EGIDDVAQAEEMVKLATAVAHLIGRSNYDAMSGQYYARFVVKNVDNSDSYLRQPHRVM ELHNDGTYVEEVTDYVLMMKIDEQNMEGGNSLLLHLDDWEHLESFFTHPLARRVMRWA APPSKNVSHDVWHPVFDVDQQGRPVMRYIDQFVQPKDFEEGVWLSELSDALETSQNIL SVPVPVGKFLLINNLFWLHGRDRFTPHPDLRRELMRQRGYFAYAASHYQTHQ" gene 2938834..2940116 /gene="ygaF" /locus_tag="STM2790" /db_xref="GeneID:1254313" regulatory 2938834..2938839 /regulatory_class="ribosome_binding_site" /gene="ygaF" /locus_tag="STM2790" /note="putative RBS for ygaF; RegulonDB:STMS1H002862" CDS 2938848..2940116 /gene="ygaF" /locus_tag="STM2790" /note="similar to E. coli orf, hypothetical protein (AAC75707.1); Blastp hit to AAC75707.1 (444 aa), 88% identity in aa 23 - 444" /codon_start=1 /transl_table=11 /product="hydroxyglutarate oxidase" /protein_id="NP_461716.1" /db_xref="GI:16766101" /db_xref="GeneID:1254313" /translation="MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTG HNSGVIHAGVYYTPGSLKAQFCLAGNQATKTFCDQNNIRYDTCGKMLVATSELEMARM RALWERTAANGLEREWLSAAELREREPNIIGLGGIFVPSSGIVSYRDVATAMANRFQA KGGEIIYHAEVSALTEHAAGVVIRTSQGREIETATLIGCAGLMADRLVKMLGVEPGFI ICPFRGEYFRLAPRHNRIVNHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLALKR EGYRKRDVSFTDTLEIFRSAGIRRVLQNHLLSGLGEMKNSLCKSGYLRRVQKYCPSLT VNDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRSIHTCNAPSPAATSAIPIGAHIVSK VQALRASQSNPGRTLRAARSVDALHAAFTR" gene 2940126..2941586 /gene="gabD" /locus_tag="STM2791" /db_xref="GeneID:1254314" regulatory 2940126..2940131 /regulatory_class="ribosome_binding_site" /gene="gabD" /locus_tag="STM2791" /note="putative RBS for gabD; RegulonDB:STMS1H002863" CDS 2940138..2941586 /gene="gabD" /locus_tag="STM2791" /EC_number="1.2.1.16" /note="similar to E. coli succinate-semialdehyde dehydrogenase, NADP-dependent activity (AAC75708.1); Blastp hit to AAC75708.1 (482 aa), 90% identity in aa 1 - 482" /codon_start=1 /transl_table=11 /product="succinate-semialdehyde dehydrogenase I" /protein_id="NP_461717.1" /db_xref="GI:16766102" /db_xref="GeneID:1254314" /translation="MQLNDSTLFRQQAFIDGDWRDARGGDVIPVSNPANGKPLGNVPK MGAEETRDAINAANRALPAWRALTAKERANILRRWFNLMMEHQDDLARLMTLEQGKPL AEAKGEISYAASFIEWFAEEGKRIYGDTIPGHQADKRLLVIKQPIGVTAAITPWNFPS AMITRKAGPALAAGCTMVLKPASQTPFSALALAELAQRAGIPAGVFNVVTGSAGDIGG ELTSNPLVRKLSFTGSTEIGRQLMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEG ALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLNQAVNKLAVGDGLQADVAIGPLIDE KAVAKVQEHIADALEKGARVITGGEAHKLGGNFFQPTILADVPDNAKVAKEETFGPLA PLFRFSDEADVIRQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVA PFGGIKASGLGREGSKYGIEDYLEIKYMCIGL" gene 2941587..2942884 /gene="gabT" /locus_tag="STM2792" /db_xref="GeneID:1254315" regulatory 2941587..2941592 /regulatory_class="ribosome_binding_site" /gene="gabT" /locus_tag="STM2792" /note="putative RBS for gabT; RegulonDB:STMS1H002864" CDS 2941601..2942884 /gene="gabT" /locus_tag="STM2792" /EC_number="2.6.1.19" /note="similar to E. coli 4-aminobutyrate aminotransferase activity (AAC75709.1); Blastp hit to AAC75709.1 (426 aa), 88% identity in aa 1 - 426" /codon_start=1 /transl_table=11 /product="4-aminobutyrate--2-oxoglutarate transaminase" /protein_id="NP_461718.1" /db_xref="GI:16766103" /db_xref="GeneID:1254315" /translation="MNTNNALMQRRHNAVPRGVGQIHPIFAERAENCRVWDVEGREYL DFAGGIAVLNTGHLHPGIVSAVEAQLKKLSHTCFQVLAYEPYLALCERMNQKVPGDFA KKTLLVTTGSEAVENAVKIARAATKRSGAIAFSGAYHGRTHYTLSLTGKVHPYSAGMG LMPGHVYRALYPCPLHNISDDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAAS PAFMQRLRALCDQHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPL AGVTGRADVMDAIAPGGLGGTYAGNPIACAAALAVLDIFEQENLLQKANTLGKTLRDG LMEIAETHREIGDVRGLGAMIAIELFENGDPGKPNAALTADIVTRAREKGLILLSCGP YYNILRILVPLTIEASQIRQGLEIIAQCFDEAKQA" gene 2943003..2944414 /gene="gabP" /locus_tag="STM2793" /db_xref="GeneID:1254316" regulatory 2943003..2943008 /regulatory_class="ribosome_binding_site" /gene="gabP" /locus_tag="STM2793" /note="putative RBS for gabP; RegulonDB:STMS1H002865" CDS 2943014..2944414 /gene="gabP" /locus_tag="STM2793" /note="APC family; similar to E. coli transport permease protein of gamma-aminobutyrate (AAC75710.1); Blastp hit to AAC75710.1 (466 aa), 92% identity in aa 1 - 466" /codon_start=1 /transl_table=11 /product="GABA permease" /protein_id="NP_461719.1" /db_xref="GI:16766104" /db_xref="GeneID:1254316" /translation="MGQLSESHALGGGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAG PAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGPWAGYTIGWLYWWFW VLVIPLEANIAAIILNSWIPGIPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKV IAILAFIALGATAISGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAE IVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKSVGSYRSV LELLHIPHAKFIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGKTNRSKTP WVAVLLSTGAAFLTVIVNYYAPAKVFKFLIDSSGAIALLVYLVIAISQLRMRKILLAQ GGEIKLKMWLYPWLTWLVIGFICFVLVVMLFRPAQQLEVISTGLLGLGIIGTVPIMSR WKKLIRWQKAPLQNLR" gene 2944444..2945133 /gene="ygaE" /locus_tag="STM2794" /db_xref="GeneID:1254317" regulatory 2944444..2944449 /regulatory_class="ribosome_binding_site" /gene="ygaE" /locus_tag="STM2794" /note="putative RBS for ygaE; RegulonDB:STMS1H002866" CDS 2944456..2945133 /gene="ygaE" /locus_tag="STM2794" /note="similar to E. coli putative transcriptional regulator (AAC75711.1); Blastp hit to AAC75711.1 (226 aa), 87% identity in aa 10 - 225" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_461720.1" /db_xref="GI:16766105" /db_xref="GeneID:1254317" /translation="MTALSQPTAIDGYRWLKNDIIRGTYQPDEKLRMSLLTARYALGV GPLREALSQLVAERLVTVVNQKGYRVASMSEAELLDIFDARANMEAMLVRLAIERGDD AWEAEILARAHMLSKLEASDASEHMLDEWDQRHQAFHSAIVAGCGSHYLLQMRERLFD LAARYRFIWLRETVLSVEMLEDKHIQHHTLTEAILAREAARASELMRQHLLTPIPIIR QAMAGKM" gene complement(2945155..2945613) /gene="ygaU" /locus_tag="STM2795" /db_xref="GeneID:1254318" CDS complement(2945155..2945604) /gene="ygaU" /locus_tag="STM2795" /note="similar to E. coli orf, hypothetical protein (AAC75712.1); Blastp hit to AAC75712.1 (149 aa), 93% identity in aa 1 - 149" /codon_start=1 /transl_table=11 /product="peptidoglycan-binding protein LysM" /protein_id="NP_461721.1" /db_xref="GI:16766106" /db_xref="GeneID:1254318" /translation="MGLFNFVKDAGEKLWDAVTANHDKDDQAKKVQEHLNKTGIPDAD KVNVQIADGKATVTGDGLSQEAKEKILVAVGNIAGISSVDDQVKTTTPAAESQFYTVK SGDTLSAISKQVYGNANLYNKIFEANKPMLKSPEKIYPGQVLRIPEE" regulatory complement(2945608..2945613) /regulatory_class="ribosome_binding_site" /gene="ygaU" /locus_tag="STM2795" /note="putative RBS for ygaU; RegulonDB:STMS1H002867" gene complement(2945704..2945873) /gene="yqaE" /locus_tag="STM2796" /db_xref="GeneID:1254319" CDS complement(2945704..2945862) /gene="yqaE" /locus_tag="STM2796" /note="similar to E. coli orf, hypothetical protein (AAC75713.1); Blastp hit to AAC75713.1 (52 aa), 94% identity in aa 1 - 51" /codon_start=1 /transl_table=11 /product="proteolipid membrane potential modulator" /protein_id="NP_461722.1" /db_xref="GI:16766107" /db_xref="GeneID:1254319" /translation="MGFWRIVFTIILPPLGVLLGKGFGWAFILNILLTLLGYIPGLIH AFWVQMRH" regulatory complement(2945868..2945873) /regulatory_class="ribosome_binding_site" /gene="yqaE" /locus_tag="STM2796" /note="putative RBS for yqaE; RegulonDB:STMS1H002868" gene 2946045..2946344 /locus_tag="STM2797" /db_xref="GeneID:1254320" CDS 2946045..2946344 /locus_tag="STM2797" /note="similar to E. coli orf, hypothetical protein (AAC75714.1); Blastp hit to AAC75714.1 (99 aa), 89% identity in aa 1 - 99" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_461723.1" /db_xref="GI:16766108" /db_xref="GeneID:1254320" /translation="MTELEQLQASAEQAAALLKAMSHPKRLLILCMLCGSPKTSAGEL ARITGLSPSATSQHLARMREEGLIDSQRDAQRIHYFIKNEAVNTIIATLKNLYCP" gene 2946343..2946881 /gene="ygaP" /locus_tag="STM2798" /db_xref="GeneID:1254321" regulatory 2946343..2946348 /regulatory_class="ribosome_binding_site" /gene="ygaP" /locus_tag="STM2798" /note="putative RBS for ygaP; RegulonDB:STMS1H002869" CDS 2946354..2946881 /gene="ygaP" /locus_tag="STM2798" /note="similar to E. coli orf, hypothetical protein (AAC75715.1); Blastp hit to AAC75715.1 (174 aa), 75% identity in aa 1 - 173" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461724.1" /db_xref="GI:16766109" /db_xref="GeneID:1254321" /translation="MSIGIVSPREAQALIAQGAKLIDVRDADEYLREHIPHAQLAPLS RLEQGDLPANLRAEQIIFHCQSGKRTSSNAAKLQAIAAPAQVSLLEGGIDGWKAAGLP VTEDKSQPLPLMRQVQIAAGGLALLGVIMGYTVHGGFFLISGFVGAGLMLAGMTGFCG MARLLEKMPWNTRTH" gene complement(2947229..2947770) /gene="stpA" /locus_tag="STM2799" /db_xref="GeneID:1254322" CDS complement(2947229..2947630) /gene="stpA" /locus_tag="STM2799" /note="DNA-binding protein STPA. (SW:STPA_SALTY)" /codon_start=1 /transl_table=11 /product="DNA-binding protein" /protein_id="NP_461725.1" /db_xref="GI:16766110" /db_xref="GeneID:1254322" /translation="MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEE ELQQRQLAEKQEKINAFLELMKADGINPEELFAMDSAMPRSAKKRQPRPAKYRFTDFN GEEKTWTGQGRTPKPIAQALAAGKSLDDFLI" regulatory complement(2947640..2947645) /regulatory_class="ribosome_binding_site" /gene="stpA" /locus_tag="STM2799" /note="putative RBS for stpA; RegulonDB:STMS1H002870" protein_bind complement(2947742..2947756) /gene="stpA" /locus_tag="STM2799" /note="putative binding site for Lrp, RegulonDB: STMS1H000256" /bound_moiety="Lrp" regulatory complement(2947743..2947751) /regulatory_class="minus_10_signal" /gene="stpA" /locus_tag="STM2799" /note="putative -10_signal for stpA; RegulonDB:STMLTH004560" regulatory complement(2947762..2947770) /regulatory_class="minus_35_signal" /gene="stpA" /locus_tag="STM2799" /note="putative -35_signal for stpA; RegulonDB:STMLTH004560" gene 2948316..2948778 /locus_tag="STM2800" /db_xref="GeneID:1254323" regulatory 2948316..2948321 /regulatory_class="ribosome_binding_site" /locus_tag="STM2800" /note="putative RBS for STM2800; RegulonDB:STMS1H002871" CDS 2948329..2948778 /locus_tag="STM2800" /note="similar to E. coli orf, hypothetical protein (AAC75717.1); Blastp hit to AAC75717.1 (149 aa), 87% identity in aa 1 - 149" /codon_start=1 /transl_table=11 /product="L-alanine exporter AlaE" /protein_id="NP_461726.1" /db_xref="GI:16766111" /db_xref="GeneID:1254323" /translation="MFSPQSRLRHAVADTFAMVVYCSVVNMLIEIFLSGMSFEQSLSS RLVAIPVNILIAWPYGVYRDLIMRVARKASPAGWAKNLADVLAYVTFQSPVYIIILLT VGAGWHQIVAAVSSNIVVSMLMGAVYGYFLDYCRRLFKVSSYHQAKA" gene complement(2948813..2949174) /gene="ygaC" /locus_tag="STM2801" /db_xref="GeneID:1254324" CDS complement(2948813..2949163) /gene="ygaC" /locus_tag="STM2801" /note="similar to E. coli orf, hypothetical protein (AAC75718.1); Blastp hit to AAC75718.1 (114 aa), 88% identity in aa 1 - 112" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461727.1" /db_xref="GI:16766112" /db_xref="GeneID:1254324" /translation="MYLRPDEVARVLEKAGFTVDVVTNKTYGYRRGENYVYVNREARM GRTALIIHPRLKDRSSSLADPASDIKTCDHYQNFPLYLGGETHEHYGIPHGFSSRIAL ERYLNGLFGDEKTD" regulatory complement(2949169..2949174) /regulatory_class="ribosome_binding_site" /gene="ygaC" /locus_tag="STM2801" /note="putative RBS for ygaC; RegulonDB:STMS1H002872" gene 2949313..2949651 /gene="ygaM" /locus_tag="STM2802" /db_xref="GeneID:1254325" CDS 2949313..2949651 /gene="ygaM" /locus_tag="STM2802" /note="similar to E. coli orf, hypothetical protein (AAC75719.1); Blastp hit to AAC75719.1 (113 aa), 86% identity in aa 1 - 112" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461728.1" /db_xref="GI:16766113" /db_xref="GeneID:1254325" /translation="MEDHMLNKPNRNDVDDGVQDIQNDVNRLADSLEDVLKSWGSDAK DEAEAARRKAQALLKETRARMQGRTRVKQAACDAMGCADTFVREKPWCSVGTAAAVGI FIGALLSLRR" gene complement(2949735..2951074) /locus_tag="STM2803" /db_xref="GeneID:1254326" CDS complement(2949735..2951069) /locus_tag="STM2803" /note="similar to E. coli putative regulator (AAC77296.1); Blastp hit to AAC77296.1 (470 aa), 31% identity in aa 119 - 437, 27% identity in aa 1 - 224" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator" /protein_id="NP_461729.1" /db_xref="GI:16766114" /db_xref="GeneID:1254326" /translation="MPRYQHIARQLKTAIEQGELAPGTRLPSSRTWAQELGVSRATVE NAYGELVAQGWLERRGQAGTFVSNALRFETAPPIPAVFAGESPEPKPFQMGLPALDLF PREKWARVMGRRLRTQTCFDLALGDVCGEAILRQAIVDYLRVSRSIECLPEQVFITSG YADSMRLILRTLSVPGDSMWVEDPGFPLIRPVITQEGITLAPIPVDADGLNVAAGMRD CPQGRFALVTPAHQSPLGVALSLTRRRQLLAWAANVQAWIIEDDYDSEFRYHGKPLPP LKSLDAPQRVIYAGTFSKSLFPALRTAWLVVPIKQIEHFRQQASLMPCSVPLLWQHTL ADFIRDGHFWRHLKKMRQHYAQRRLWIEEALAEQGFVVTLQKGGIQLVIEVEGDDKAQ VAKANQAGLAVQALSRWRVVSSGKGGILLSFTNITSAGMAKQVACQLRQAIQ" regulatory complement(2951069..2951074) /regulatory_class="ribosome_binding_site" /locus_tag="STM2803" /note="putative RBS for STM2803; RegulonDB:STMS1H002873" gene 2951145..2951589 /locus_tag="STM2804" /db_xref="GeneID:1254327" regulatory 2951145..2951150 /regulatory_class="ribosome_binding_site" /locus_tag="STM2804" /note="putative RBS for STM2804; RegulonDB:STMS1H002874" CDS 2951158..2951589 /locus_tag="STM2804" /note="similar to E. coli orf, hypothetical protein (AAC74823.1); Blastp hit to AAC74823.1 (182 aa), 35% identity in aa 54 - 167" /codon_start=1 /transl_table=11 /product="alkylhydroperoxidase" /protein_id="NP_461730.1" /db_xref="GI:16766115" /db_xref="GeneID:1254327" /translation="MTTLRQPYYELSPEVYSALVQAKNALEKSTLDPTLMELIYLRVS QINGCAFCLEMHSKALRKAGVNQAKLDALAGWRVSHHFSEQECAALAWAESVTHIAET HAEDNIYLPLLDHFSAREISDLTFAIGLMNCFNRLAIGMRM" gene 2951846..2952106 /gene="nrdH" /locus_tag="STM2805" /db_xref="GeneID:1254328" regulatory 2951846..2951851 /regulatory_class="ribosome_binding_site" /gene="nrdH" /locus_tag="STM2805" /note="putative RBS for nrdH; RegulonDB:STMS1H002875" CDS 2951861..2952106 /gene="nrdH" /locus_tag="STM2805" /note="hydrogen donor; glutaredoxin-like protein NRDH. (SW:NRDH_SALTY)" /codon_start=1 /transl_table=11 /product="NrdH-redoxin" /protein_id="NP_461731.1" /db_xref="GI:16766116" /db_xref="GeneID:1254328" /translation="MSITIYTRNNCVQCHATKRAMESRGFEFEMVNVDLVPDAADTLR AQGFRQLPVVMAGDLSWSGFRPDMINRLHPTPHAANA" gene 2952092..2952513 /gene="nrdI" /locus_tag="STM2806" /db_xref="GeneID:1254329" regulatory 2952092..2952097 /regulatory_class="ribosome_binding_site" /gene="nrdH" /locus_tag="STM2805" /note="putative RBS for nrdI; RegulonDB:STMS1H002876" CDS 2952103..2952513 /gene="nrdI" /locus_tag="STM2806" /note="NRDI protein. (SW:NRDI_SALTY)" /codon_start=1 /transl_table=11 /product="ribonucleotide reductase assembly protein NrdI" /protein_id="NP_461732.1" /db_xref="GI:16766117" /db_xref="GeneID:1254329" /translation="MSALVYFSSSSENTHRFMQRLGLPATRIPLNERERIQVDEPYIL VVPSYGGGGMAGAVPRQVIRFLNDEHNRARIRGVIASGNRNFGDAWGCAGDVIAQKCG VPWLYRFELMGTQRDIDNVRKGVNEFWQQLPRSA" gene 2952470..2954630 /gene="nrdE" /locus_tag="STM2807" /db_xref="GeneID:1254330" regulatory 2952470..2952475 /regulatory_class="ribosome_binding_site" /gene="nrdI" /locus_tag="STM2806" /note="putative RBS for nrdE; RegulonDB:STMS1H002877" CDS 2952486..2954630 /gene="nrdE" /locus_tag="STM2807" /EC_number="1.17.4.1" /note="ribonucleoside-diphosphate reductase 2 alpha chain. (SW:RIR3_SALTY)" /codon_start=1 /transl_table=11 /product="ribonucleotide-diphosphate reductase subunit alpha" /protein_id="NP_461733.1" /db_xref="GI:16766118" /db_xref="GeneID:1254330" /translation="MATTTPERVMQETMDYHALNAMLNLYDKAGHIQFDKDQQAIDAF FATHVRPHSVTFASQHERLGTLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTF LGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPA TPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAG APIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKREN ADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSPYDIQRRYGKPFGDIAISERYDEL IADPHVRKTYINARDFFQTLAEIQFESGYPYIMFEDTVNRANPIAGRINMSNLCSEIL QVNSASRYDDNLDYTHIGHDISCNLGSLNIAHVMDSPDIGRTVETAIRGLTAVSDMSH IRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHT SMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMW LKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPA PFMTNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIY AWRKGIKSLYYIRLRQLALEGTEIEGCVSCAL" gene 2954629..2955600 /gene="nrdF" /locus_tag="STM2808" /db_xref="GeneID:1254331" regulatory 2954629..2954634 /regulatory_class="ribosome_binding_site" /gene="nrdF" /locus_tag="STM2808" /note="putative RBS for nrdF; RegulonDB:STMS1H002878" CDS 2954641..2955600 /gene="nrdF" /locus_tag="STM2808" /EC_number="1.17.4.1" /note="ribonucleoside-diphosphate reductase 2 beta chain. (SW:RIR4_SALTY)" /codon_start=1 /transl_table=11 /product="class 1b ribonucleoside-diphosphate reductase subunit beta" /protein_id="NP_461734.1" /db_xref="GI:16766119" /db_xref="GeneID:1254331" /translation="MKLSRISAINWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPA WQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHA RSYSSIFSTLCQTKEVDAAYAWSEENPPLQRKAQIILAHYVSDEPLKKKIASVFLESF LFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREEL KLFALDLLMELYDNEIRYTEALYAETGWVNDVKAFLCYNANKALMNLGYEALFPPEMA DVNPAILAALSPNADENHDFFSGSGSSYVMGKTVETEDEDWNF" gene 2955884..2957157 /gene="proV" /locus_tag="STM2809" /db_xref="GeneID:1254332" regulatory 2955884..2955892 /regulatory_class="minus_35_signal" /gene="proV" /locus_tag="STM2809" /note="putative -35_signal for proV; RegulonDB:STMLTH004561" regulatory 2955911..2955919 /regulatory_class="minus_10_signal" /gene="proV" /locus_tag="STM2809" /note="putative -10_signal for proV; RegulonDB:STMLTH004561" regulatory 2955937..2955942 /regulatory_class="ribosome_binding_site" /gene="proV" /locus_tag="STM2809" /note="putative RBS for proV; RegulonDB:STMS1H002879" CDS 2955955..2957157 /gene="proV" /locus_tag="STM2809" /note="ABC superfamily (atp_bind); glycine betaine/l-proline transport ATP-binding protein PROV. (SW:PROV_SALTY)" /codon_start=1 /transl_table=11 /product="glycine betaine/L-proline ABC transporter ATP-binding protein" /protein_id="NP_461735.1" /db_xref="GI:16766120" /db_xref="GeneID:1254332" /translation="MAIKLEVKNLYKIFGEHPQRAFKYIEKGLSKEQILEKTGLSLGV KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELRE VRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGIAAQERREKALDALRQVGLENYAHA YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTI VFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSA KDIARRSPVGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGVVSIDSLKAALS QAQGIEAALIDDPLVVDAQTPLSELLSHVGQAPCAVPVVDEEHQYVGIISKRMLLQAL DREGGNNG" gene 2957137..2958214 /gene="proW" /locus_tag="STM2810" /db_xref="GeneID:1254333" regulatory 2957137..2957142 /regulatory_class="ribosome_binding_site" /gene="proW" /locus_tag="STM2810" /note="putative RBS for proW; RegulonDB:STMS1H002880" CDS 2957150..2958214 /gene="proW" /locus_tag="STM2810" /note="ABC superfamily (membrane); glycine betaine/L-proline transport system permease protein PROW. (SW:PROW_SALTY)" /codon_start=1 /transl_table=11 /product="proline/betaine ABC transporter permease ProW" /protein_id="NP_461736.1" /db_xref="GI:16766121" /db_xref="GeneID:1254333" /translation="MADQTNPWDTAQVADTTTQTADAWGTPAGVATDGGSTDWLNSAP APAPEHFSLLDPFHKTLIPLDSWVTEGIDWVVTHFRPLFQGIRVPVDYILNGFQQLLL GMPAPVAIILFALIAWQVSGVGMGIATLISLIAIGAIGAWSQAMITLALVLTALLFCV VIGLPMGIWLARSPRAAKIVRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFA LPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLAL SMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGRDSRSR GNRRWYTTGPVGLITRPFVK" gene 2958273..2959279 /gene="proX" /locus_tag="STM2811" /db_xref="GeneID:1254334" regulatory 2958273..2958278 /regulatory_class="ribosome_binding_site" /gene="proX" /locus_tag="STM2811" /note="putative RBS for proX; RegulonDB:STMS1H002881" CDS 2958284..2959279 /gene="proX" /locus_tag="STM2811" /note="ABC superfamily (bind_prot), ; similar to E. coli high-affinity transport system for glycine betaine and proline (AAC75726.1); Blastp hit to AAC75726.1 (330 aa), 83% identity in aa 1 - 330" /codon_start=1 /transl_table=11 /product="glycine betaine ABC transporter substrate-binding protein" /protein_id="NP_461737.1" /db_xref="GI:16766122" /db_xref="GeneID:1254334" /translation="MRHTVIFASAFATLVTASAFAADLPGKGITVQPIQSTISEETFQ TLLVSRALEKLGYTVNKPSEVDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDNK FYREGVFVSGAAQGYLIDKKTAEQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPG WGCEAVINHQNKAFDLQKTVEVSHGNYAAMMADTITRFKEGKPVLYYTWTPYWVSDVM KPGKDVVWLQVPFSSLPGEQKNIDTKLPNGANYGFPVNTMHIVANKAWAEKNPAAAKL FAIMKLPLADINAQNAMMHAGKSSEADVQGHVDGWINAHQQQFDGWVKEALAAQK" gene 2959431..2960628 /locus_tag="STM2812" /db_xref="GeneID:1254335" regulatory 2959431..2959436 /regulatory_class="ribosome_binding_site" /locus_tag="STM2812" /note="putative RBS for STM2812; RegulonDB:STMS1H002882" CDS 2959444..2960628 /locus_tag="STM2812" /note="similar to E. coli putative transport protein (AAC75728.1); Blastp hit to AAC75728.1 (305 aa), 92% identity in aa 1 - 305" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_461738.1" /db_xref="GI:16766123" /db_xref="GeneID:1254335" /translation="MTKPTHELSPALIVLMSVATGLAVASNYYAQPLLDTIAHHFSLS ASSAGFIVTAAQLGYAAGLLFLVPLGDMFERRTLIVSMTLLAAGGMLITASSQSLSMM ILGTALTGLFSVVAQILVPLAATLATPATRGKVVGTIMSGLLLGILLARTVAGLLANL GGWRTVFWVASALMALMAVALWRGLPKLKSDTHLNYPQLLGSVFSLFIHDKLLRTRAL LGCLTFANFSILWTSMAFLLAAPPFSYSEGMIGLFGLAGAAGALGARPAGGFADKGKS HLTTTFGLLLLLLSWLAIWLGHTSVLALIIGILVLDLTVQGVHITNQTVIYRLHPDAR NRLTAGYMTSYFIGGAAGSLISASAWQHAGWAGVCLAGVTVALLNLLVWWRGFHRQEA VN" gene 2960989..2961655 /gene="emrR" /locus_tag="STM2813" /db_xref="GeneID:1254336" regulatory 2960989..2960997 /regulatory_class="minus_35_signal" /gene="emrR" /locus_tag="STM2813" /note="putative -35_signal for emrR; RegulonDB:STMLTH004562" regulatory 2961013..2961021 /regulatory_class="minus_10_signal" /gene="emrR" /locus_tag="STM2813" /note="putative -10_signal for emrR; RegulonDB:STMLTH004562" regulatory 2961111..2961116 /regulatory_class="ribosome_binding_site" /gene="emrR" /locus_tag="STM2813" /note="putative RBS for emrR; RegulonDB:STMS1H002883" CDS 2961125..2961655 /gene="emrR" /locus_tag="STM2813" /note="MarR family; similar to E. coli regulator of plasmid mcrB operon (microcin B17 synthesis) (AAC75731.1); Blastp hit to AAC75731.1 (176 aa), 93% identity in aa 1 - 175" /codon_start=1 /transl_table=11 /product="transcriptional repressor MprA" /protein_id="NP_461739.1" /db_xref="GI:16766124" /db_xref="GeneID:1254336" /translation="MDSSFTPIEQMLKFRASRHEDFPYQEILLTRLCMHMQGKLLENR NKMLKAQGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIE RRESDNDRRCLHLQLTEKGQAFLQEVLPPQHHCLHQLWSSLSTAEKDQLEHITRKLLT RLDQMEQEGTVLEALR" gene 2961770..2962954 /gene="emrA" /locus_tag="STM2814" /db_xref="GeneID:1254337" regulatory 2961770..2961775 /regulatory_class="ribosome_binding_site" /gene="emrA" /locus_tag="STM2814" /note="putative RBS for emrA; RegulonDB:STMS1H002884" CDS 2961782..2962954 /gene="emrA" /locus_tag="STM2814" /note="similar to E. coli multidrug resistance secretion protein (AAC75732.1); Blastp hit to AAC75732.1 (390 aa), 89% identity in aa 1 - 390" /codon_start=1 /transl_table=11 /product="multidrug export protein EmrA" /protein_id="NP_461740.1" /db_xref="GI:16766125" /db_xref="GeneID:1254337" /translation="MSANAEIQTPQQPAKKKGKRKTALLLLTLLFVIIAVAYGIYWFL VLRHIEETDDAYVAGNQVQIMAQVSGSVTKVWADNTDFVKEGDVLVTLDQTDAKQAFE KAKTALASSVRQTHQLMINSKQLQANIDVQKTALAQAQSDLNRRVPLGNANLIGREEL QHARDAVASAQAQLDVAIQQYNANQAMILNSNLEDQPAVQQAATEVRNAWLALERTRI VSPMTGYVSRRAVQPGAQISPTTPLMAVVPATDLWVDANFKETQLANMRIGQPVTVIT DIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRVELDARQLEQHP LRIGLSTLVTVDTANRDGQVLASQVRTTPVAESNAREINLAPVNKLIDDIVQANAG" gene 2962959..2964509 /gene="emrB" /locus_tag="STM2815" /db_xref="GeneID:1254338" regulatory 2962959..2962964 /regulatory_class="ribosome_binding_site" /gene="emrB" /locus_tag="STM2815" /note="putative RBS for emrB; RegulonDB:STMS1H002885" CDS 2962971..2964509 /gene="emrB" /locus_tag="STM2815" /note="similar to E. coli multidrug resistance; probably membrane translocase (AAC75733.1); Blastp hit to AAC75733.1 (512 aa), 95% identity in aa 1 - 512" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_461741.1" /db_xref="GI:16766126" /db_xref="GeneID:1254338" /translation="MQQQKPLEGAQLVIMTIALSLATFMQVLDSTIANVAIPTIAGNL GSSLSQGTWVITSFGVANAISIPLTGWLAKRFGEVKLFMWSTVAFAAASWACGVSSSL NMLIFFRVVQGVVAGPLIPLSQSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGY ISDNYHWGWIFFINVPIGIAVVLMTLHTLRGRETHTERRRIDAVGLALLVIGIGSLQI MLDRGKELDWFSSQEIIILTVVAVIAISFLIVWELTDDHPIVDLSLFKSRNFTIGCLC ISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGIIPVILSPIIGRFAHKLDMR RLVTFSFIMYAVCFYWRAWTFEPGMDFGASAWPQFIQGFAVACFFMPLTTITLSGLPP ERLAAASSLSNFTRTLAGSIGTSITTTMWTDRESLHHAQLTESVTAYNPNAQTMYDKL EGLGMTHQQASGWIAQQITNQGLIISANEIFWMSAGIFLVLLGLVWFAKPPFGAGGGG GGAH" gene complement(2964558..2965933) /locus_tag="STM2816" /db_xref="GeneID:1254339" CDS complement(2964558..2965928) /locus_tag="STM2816" /codon_start=1 /transl_table=11 /product="porin" /protein_id="NP_461742.1" /db_xref="GI:16766127" /db_xref="GeneID:1254339" /translation="MKAKYLALMIGACFSHNLWAANNITIEQRLAELEQRVVNAEKRA SDAEAQIRSLKQQQVAATPTVNVQSAEPIAADKTPPKLTLSGFSDIKFYGDVEFNMDA ASRSGSLTSTRTSANKDWAPGTNERWDINGRLLLGFDGYQRLDNGNFAGFSVQPLADL TGKMNLDDAVFFFGRENDWKIKVGRFEAYDMFPLNQDTFIEYSGNTANDLYSDGYGYI YMMKEGRGRSDSGGNFLLSKTIDNWYFEVNTLLENGSTLYTEKQYHGMDLSNDKNVAY VRPVIAWQNGRFSTAIAMESNVVNNAYGYYENGKWIDQSDRTGYGFTMTWNGQKTDPE DGAVINLNTAYMDATDETDFTAGVNALWHRFELGYIYAHNKIEAFNATNIDAVCEDDC WVTDPGNYDIHTIHASYLFPNVMDMKNFNIYLGAYASWVEANPNNGDNSEDARYGGRL RFKYFF" regulatory complement(2965928..2965933) /regulatory_class="ribosome_binding_site" /locus_tag="STM2816" /note="putative RBS for STM2816; RegulonDB:STMS1H002886" gene complement(2966274..2966800) /gene="luxS" /locus_tag="STM2817" /db_xref="GeneID:1254340" CDS complement(2966274..2966789) /gene="luxS" /locus_tag="STM2817" /note="produces autoinducer; acyl-homoserine lactone-signaling molecules; similar to E. coli orf, hypothetical protein (AAC75734.1); Blastp hit to AAC75734.1 (171 aa), 94% identity in aa 1 - 171" /codon_start=1 /transl_table=11 /product="S-ribosylhomocysteine lyase" /protein_id="NP_461743.1" /db_xref="GI:16766128" /db_xref="GeneID:1254340" /translation="MPLLDSFAVDHTRMQAPAVRVAKTMNTPHGDAITVFDLRFCIPN KEVMPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVAD AWKAAMADVLKVQDQNQIPELNVYQCGTYQMHSLSEAQDIARHILERDVRVNSNKELA LPKEKLQELHI" regulatory complement(2966795..2966800) /regulatory_class="ribosome_binding_site" /gene="luxS" /locus_tag="STM2817" /note="putative RBS for luxS; RegulonDB:STMS1H002887" gene complement(2966939..2968511) /gene="gshA" /locus_tag="STM2818" /db_xref="GeneID:1254341" CDS complement(2966939..2968495) /gene="gshA" /locus_tag="STM2818" /EC_number="6.3.2.2" /note="glutamate--cysteine ligase. (SW:GSH1_SALTY)" /codon_start=1 /transl_table=11 /product="glutamate--cysteine ligase" /protein_id="NP_461744.1" /db_xref="GI:16766129" /db_xref="GeneID:1254341" /translation="MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGH PEALGSALTHKWITTDFAEALLEFITPVDGDIQHMLTFMRDLHRYTARKLGDERMWPL SMPCYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFW QAKCGVTEGEAAKEKISAGYFRLIRNYYRFGWVIPYLFGASPAICSSFLQGKPTTLPF EKTDCGMYYLPYATSLRLSDLGYTNKSQSNLGITFNDLHEYVAGLKRAIKTPSEEYAR IGVEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDI NPFSPIGVDEQQVRFLDLFMVWCVLADAPEMSSDELLCTRTNWNRVILEGRKPGLTLG IGCETAQFPLPKVGKDLFRDLKRVAQTLDSIHGGEEYQKVCDELVACFDNPELTFSAR ILRSMIDEGIGGTGKAFGEAYRNLLREEPLEILQEEEFIAERDASVRRQQEIEAADTE PFAAWLAKHA" regulatory complement(2968506..2968511) /regulatory_class="ribosome_binding_site" /gene="gshA" /locus_tag="STM2818" /note="putative RBS for gshA; RegulonDB:STMS1H002888" gene complement(2968572..2969014) /gene="yqaA" /locus_tag="STM2819" /db_xref="GeneID:1254342" CDS complement(2968572..2968997) /gene="yqaA" /locus_tag="STM2819" /note="similar to E. coli orf, hypothetical protein (AAC75736.1); Blastp hit to AAC75736.1 (142 aa), 90% identity in aa 1 - 141" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461745.1" /db_xref="GI:16766130" /db_xref="GeneID:1254342" /translation="MSDGLSLLSLFASSFLSATLLPGNSEVVLVAMLVSGVSHPWVLV LTATMGNSLGGVTNVILGRFFPLRKTSRWQEKATGWLKRYGAATLLLSWMPVIGDLLC LLAGWMRIPWGRTIFFLCLGKALRYVALAAATVQGMMWW" gene complement(2968994..2969569) /gene="yqaB" /locus_tag="STM2820" /db_xref="GeneID:1254343" CDS complement(2968994..2969560) /gene="yqaB" /locus_tag="STM2820" /note="similar to E. coli putative phosphatase (AAC75737.1); Blastp hit to AAC75737.1 (188 aa), 87% identity in aa 1 - 188" /codon_start=1 /transl_table=11 /product="fructose-1-phosphate/6-phosphogluconate phosphatase" /protein_id="NP_461746.1" /db_xref="GI:16766131" /db_xref="GeneID:1254343" /translation="MYARYAGLIFDMDGTLLDTEPTHRKAWREVLGRYGLRFDEQAMV ALNGSPTWLIAQSIIELNHADLDPLSLAREKTDAVKSILLDCVEPLPLVEVVKAWHGR RPMSVGTGSESAIAEALLAHLGLRRYFDAVVAADHVQHHKPAPDTFLLCAQRMGVMPT QCVVFEDADFGLQAARAAGMDAVDVRLL" regulatory complement(2969009..2969014) /regulatory_class="ribosome_binding_site" /gene="yqaA" /locus_tag="STM2819" /note="putative RBS for yqaA; RegulonDB:STMS1H002889" regulatory complement(2969564..2969569) /regulatory_class="ribosome_binding_site" /gene="yqaB" /locus_tag="STM2820" /note="putative RBS for yqaB; RegulonDB:STMS1H002890" gene complement(2969932..2970005) /locus_tag="STM2821" /db_xref="GeneID:1254344" tRNA complement(2969932..2970005) /locus_tag="STM2821" /product="tRNA-Arg" /db_xref="GeneID:1254344" gene complement(2970202..2970275) /locus_tag="STM2822" /db_xref="GeneID:1254345" tRNA complement(2970202..2970275) /locus_tag="STM2822" /product="tRNA-Arg" /db_xref="GeneID:1254345" gene complement(2970341..2970414) /locus_tag="STM2823" /db_xref="GeneID:1254346" tRNA complement(2970341..2970414) /locus_tag="STM2823" /product="tRNA-Arg" /db_xref="GeneID:1254346" gene complement(2970480..2970553) /locus_tag="STM2824" /db_xref="GeneID:1254347" tRNA complement(2970480..2970553) /locus_tag="STM2824" /product="tRNA-Arg" /db_xref="GeneID:1254347" gene complement(2970560..2970649) /locus_tag="STM2825" /db_xref="GeneID:1254348" tRNA complement(2970560..2970649) /locus_tag="STM2825" /product="tRNA-Ser" /db_xref="GeneID:1254348" gene complement(2970955..2971152) /gene="csrA" /locus_tag="STM2826" /db_xref="GeneID:1254349" CDS complement(2970955..2971140) /gene="csrA" /locus_tag="STM2826" /note="carbon storage regulator (SW:CSRA_ECOLI)" /codon_start=1 /transl_table=11 /product="carbon storage regulator" /protein_id="NP_461747.1" /db_xref="GI:16766132" /db_xref="GeneID:1254349" /translation="MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHR EEIYQRIQAEKSQQSSY" regulatory complement(2971147..2971152) /regulatory_class="ribosome_binding_site" /gene="csrA" /locus_tag="STM2826" /note="putative RBS for csrA; RegulonDB:STMS1H002892" gene complement(2971375..2974015) /gene="alaS" /locus_tag="STM2827" /db_xref="GeneID:1254350" CDS complement(2971375..2974005) /gene="alaS" /locus_tag="STM2827" /EC_number="6.1.1.7" /note="similar to E. coli alanyl-tRNA synthetase (AAC75739.1); Blastp hit to AAC75739.1 (876 aa), 95% identity in aa 1 - 876" /codon_start=1 /transl_table=11 /product="alanine--tRNA ligase" /protein_id="NP_461748.1" /db_xref="GI:16766133" /db_xref="GeneID:1254350" /translation="MSKSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGM NQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDY FKHDAIQFAWELLTGENWFALPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDN KGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQ FNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDL GNKSLRVIADHIRSCAFLVADGVLPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKL VGPLIEVMGSAGEELKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLQGDTLDG ETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREASGFGADYNAMI RVDSASEFKGYDHLELNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGD KGELKGAGFTFAVDDTQKYGQAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSA THLMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNL PIETNIMDLDAAKAKGAMALFGEKYDERVRVLSMGDFSTELCGGTHASRTGDIGLFRI ISESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTR QLEKELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLG STVIVLATVVEGKVSLIAGVSKDVTDRVKAGELIGMVAQQVGGKGGGRPDMAQAGGTD AAALPAALASVQGWVSAKLQ" regulatory complement(2974010..2974015) /regulatory_class="ribosome_binding_site" /gene="alaS" /locus_tag="STM2827" /note="putative RBS for alaS; RegulonDB:STMS1H002893" gene complement(2974241..2974751) /gene="oraA" /locus_tag="STM2828" /db_xref="GeneID:1254351" CDS complement(2974241..2974741) /gene="oraA" /locus_tag="STM2828" /note="similar to E. coli regulator, OraA protein (AAC75740.1); Blastp hit to AAC75740.1 (166 aa), 87% identity in aa 1 - 166" /codon_start=1 /transl_table=11 /product="recombination regulator RecX" /protein_id="NP_461749.1" /db_xref="GI:16766134" /db_xref="GeneID:1254351" /translation="MSEPTSRRPAYARLLDRAVRILAVRDHSEQELRRKLSAPVMGKN GPEEIDATADDYERVIAWCHEHHYLDDERFVMRFIASRSRKGYGPARIRQELNQKGIS RESTEKAMRECEIDWSEMAREQAVRKYGEPLPSNFSEKVKVQRFLLYRGYLMDNIQQI WRNFAD" regulatory complement(2974746..2974751) /regulatory_class="ribosome_binding_site" /gene="oraA" /locus_tag="STM2828" /note="putative RBS for oraA; RegulonDB:STMS1H002894" gene complement(2974858..2976032) /gene="recA" /locus_tag="STM2829" /db_xref="GeneID:1254352" CDS complement(2974858..2975919) /gene="recA" /locus_tag="STM2829" /note="contains proteinase and nuclease activity; similar to E. coli DNA strand exchange and renaturation, DNA-dependent ATPase, DNA- and ATP-dependent coprotease (AAC75741.1); Blastp hit to AAC75741.1 (353 aa), 97% identity in aa 1 - 353" /codon_start=1 /transl_table=11 /product="recombinase RecA" /protein_id="NP_461750.1" /db_xref="GI:16766135" /db_xref="GeneID:1254352" /translation="MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTG SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP VYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF YASVRLDIRRIGAVKEGDNVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELV DLGVKEKLIEKAGAWYSYNGEKIGQGKANATTWLKENPATAKEIEKRVRELLLSNQNA TPDFAVDDSEGVAETNEDF" regulatory complement(2975925..2975930) /regulatory_class="ribosome_binding_site" /gene="recA" /locus_tag="STM2829" /note="putative RBS for recA; RegulonDB:STMS1H002895" protein_bind complement(2975982..2976002) /gene="recA" /locus_tag="STM2829" /note="putative binding site for LexA, RegulonDB: STMS1H000243" /bound_moiety="LexA" gene complement(2976004..2976510) /gene="ygaD" /locus_tag="STM2830" /db_xref="GeneID:1254353" CDS complement(2976004..2976501) /gene="ygaD" /locus_tag="STM2830" /note="similar to E. coli orf, hypothetical protein (AAC75742.1); Blastp hit to AAC75742.1 (165 aa), 92% identity in aa 1 - 165" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461751.1" /db_xref="GI:16766136" /db_xref="GeneID:1254353" /translation="MTDSELMRLSEQVGLALKARGATVTTAESCTGGWLAKAITDIAG SSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSEPVVVEMAIGALKAARADFAVAI SGIAGPDGGSEEKPVGTVWFAFASVSGEGITRRECFSGDRESVRRQATTYALQTLWQQ FLQNT" regulatory complement(2976005..2976013) /regulatory_class="minus_10_signal" /gene="ygaD" /locus_tag="STM2830" /note="putative -10_signal for recA; RegulonDB:STMLTH004563" regulatory complement(2976024..2976032) /regulatory_class="minus_35_signal" /gene="ygaD" /locus_tag="STM2830" /note="putative -35_signal for recA; RegulonDB:STMLTH004563" regulatory complement(2976505..2976510) /regulatory_class="ribosome_binding_site" /gene="ygaD" /locus_tag="STM2830" /note="putative RBS for ygaD; RegulonDB:STMS1H002896" gene complement(2976979..2978069) /gene="mltB" /locus_tag="STM2831" /db_xref="GeneID:1254354" CDS complement(2976979..2978058) /gene="mltB" /locus_tag="STM2831" /EC_number="3.2.1.-" /note="similar to E. coli membrane-bound lytic murein transglycosylase B (AAC75743.1); Blastp hit to AAC75743.1 (361 aa), 92% identity in aa 1 - 361" /codon_start=1 /transl_table=11 /product="murein transglycosylase B" /protein_id="NP_461752.1" /db_xref="GI:16766137" /db_xref="GeneID:1254354" /translation="MFKRRYVALLPLCVLLAACSSTPKSSETQATTGTPSGGFLLEPQ HNVMQMGGDFANNPNAQQFIDKMVSKHGFDRQQLQEILSQSKRLDYVLRLMDRQAPTT QPPAGPNGAWLRYRKQFITPDNVQNGVAFWNQYEDALNRAWQVYGVPPEIIVGIIGVE TRWGRIMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAGA MGYGQFMPSSYKEYAVDFNGDGHINLWDPVDAIGSVANYFKAHGWVKGDMVAVPASGQ APGLANGFKTKYSISQLAAAGLTPQQSLGNHQEASLLRLDIGTGYQYWYGLPNFYTIT RYNHSTHYAMAVWQLGQAVALARVR" regulatory complement(2978064..2978069) /regulatory_class="ribosome_binding_site" /gene="mltB" /locus_tag="STM2831" /note="putative RBS for mltB; RegulonDB:STMS1H002897" gene 2978191..2978875 /gene="srlA" /locus_tag="STM2832" /db_xref="GeneID:1254355" regulatory 2978191..2978199 /regulatory_class="minus_35_signal" /gene="srlA" /locus_tag="STM2832" /note="putative -35_signal for srlA; RegulonDB:STMLTH004564" regulatory 2978215..2978223 /regulatory_class="minus_10_signal" /gene="srlA" /locus_tag="STM2832" /note="putative -10_signal for srlA; RegulonDB:STMLTH004564" regulatory 2978300..2978305 /regulatory_class="ribosome_binding_site" /gene="srlA" /locus_tag="STM2832" /note="putative RBS for srlA; RegulonDB:STMS1H002898" CDS 2978312..2978875 /gene="srlA" /locus_tag="STM2832" /EC_number="2.7.1.191" /note="one of two IIC components; similar to E. coli PTS system, glucitol/sorbitol-specific IIC component, one of two (AAC75744.1); Blastp hit to AAC75744.1 (187 aa), 96% identity in aa 1 - 187" /codon_start=1 /transl_table=11 /product="PTS glucitol/sorbitol transporter subunit IIC" /protein_id="NP_461753.1" /db_xref="GI:16766138" /db_xref="GeneID:1254355" /translation="MIETITHGAEWFIGLFQKGGEVFTGMVTGILPLLISLLVIMNAL INFIGQQRIERFAQRCAGNPLSRYLLLPCIGTFVFCNPMTLSLGRFMPEKYKPSYYAA ASYSCHSMNGLFPHINPGELFVYLGIASGLTTLGLPLGPLAVSYLLVGLVTNFFRGWV TDLTTAIFEKKMGIQLEQKVHLTGAVS" gene 2978859..2979843 /gene="srlE" /locus_tag="STM2833" /db_xref="GeneID:1254356" regulatory 2978859..2978864 /regulatory_class="ribosome_binding_site" /gene="srlA" /locus_tag="STM2832" /note="putative RBS for srlE; RegulonDB:STMS1H002899" CDS 2978872..2979843 /gene="srlE" /locus_tag="STM2833" /EC_number="2.7.1.191" /note="one of two IIC components; similar to E. coli PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components (AAC75745.1); Blastp hit to AAC75745.1 (319 aa), 92% identity in aa 1 - 319" /codon_start=1 /transl_table=11 /product="PTS glucitol/sorbitol transporter subunit IIB" /protein_id="NP_461754.1" /db_xref="GI:16766139" /db_xref="GeneID:1254356" /translation="MTRVRIEKGAGGWGGPLELDVTPDKKIVYITAGTRPAIVDKLAQ LTGWQAVDGFKEGEPPEAEIGAAIIDCGGTLRCGIYPKRRIPTINIHSTGKSGPLAQY IVEDIYVSGVKEENITLVGETPASPQPAKTTLGRDYDTSKKITEQSDGLLAKVGMGMG SAVAVLFQSGRDTIDTVLKTILPFMAFVSALIGIIMASGLGDWIAHGLAPLASHPLGL VTLALICSFPLLSPFLGPGAVIAQVIGVLIGVQIGLGNIPPHLALPALFAINAQAACD FIPVGLSLAEAKQDTVRVGVPSVLVGRFLTGAPTVLIAWFVSGFIYQ" gene 2979844..2980217 /gene="slrB" /locus_tag="STM2834" /db_xref="GeneID:1254357" regulatory 2979844..2979849 /regulatory_class="ribosome_binding_site" /gene="slrB" /locus_tag="STM2834" /note="putative RBS for slrB; RegulonDB:STMS1H002900" CDS 2979855..2980217 /gene="slrB" /locus_tag="STM2834" /EC_number="2.7.1.191" /note="similar to E. coli PTS system, glucitol/sorbitol-specific enzyme IIA component (AAC75746.1); Blastp hit to AAC75746.1 (123 aa), 82% identity in aa 1 - 118" /codon_start=1 /transl_table=11 /product="PTS glucitol/sorbitol transporter subunit IIA" /protein_id="NP_461755.1" /db_xref="GI:16766140" /db_xref="GeneID:1254357" /translation="MSVIYQTTITRIGQSAKEALGEQMLITFREGAPADIEEFCFIHC HGELTGALQPGARCELGQHCYPVTAVGSVAEQNLRELGHITLRFDGLREAEFPGTVHV AGPVPDDIAPGCILTFVA" gene 2980216..2981008 /gene="srlD" /locus_tag="STM2835" /db_xref="GeneID:1254358" regulatory 2980216..2980221 /regulatory_class="ribosome_binding_site" /gene="srlD" /locus_tag="STM2835" /note="putative RBS for srlD; RegulonDB:STMS1H002901" CDS 2980229..2981008 /gene="srlD" /locus_tag="STM2835" /EC_number="1.1.1.140" /note="similar to E. coli glucitol (sorbitol)-6-phosphate dehydrogenase (AAC75747.1); Blastp hit to AAC75747.1 (259 aa), 97% identity in aa 1 - 259" /codon_start=1 /transl_table=11 /product="sorbitol-6-phosphate 2-dehydrogenase" /protein_id="NP_461756.1" /db_xref="GI:16766141" /db_xref="GeneID:1254358" /translation="MNQVAVVIGGGQTLGAFLCRGLAEEGYRVAVVDIQSDKAANVAQ EINADFGEGMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYSAGIAKAAFISDFQL GDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFG GVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYATKLGIKPDEVEQYYIDK VPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQVMF" gene 2981072..2981443 /gene="gutM" /locus_tag="STM2836" /db_xref="GeneID:1254359" regulatory 2981072..2981077 /regulatory_class="ribosome_binding_site" /gene="gutM" /locus_tag="STM2836" /note="putative RBS for gutM; RegulonDB:STMS1H002902" CDS 2981084..2981443 /gene="gutM" /locus_tag="STM2836" /note="similar to E. coli glucitol operon activator (AAC75748.1); Blastp hit to AAC75748.1 (119 aa), 83% identity in aa 1 - 119" /codon_start=1 /transl_table=11 /product="transcriptional regulator GutM" /protein_id="NP_461757.1" /db_xref="GI:16766142" /db_xref="GeneID:1254359" /translation="MVSTLITVAVIAWCAQLALGGWQISRFNRAFDKLSQQGRVGVGR SGGRFKPRVVVAVALDEQQRVTDTLLMKGLTVFARPVKIAAMQGKHLHELQPDVIFPH DSLAQNALSLALKLKHG" gene 2981625..2982414 /gene="srlR" /locus_tag="STM2837" /db_xref="GeneID:1254360" regulatory 2981625..2981630 /regulatory_class="ribosome_binding_site" /gene="srlR" /locus_tag="STM2837" /note="putative RBS for srlR; RegulonDB:STMS1H002903" CDS 2981641..2982414 /gene="srlR" /locus_tag="STM2837" /note="DeoR family; similar to E. coli regulator for gut (srl), glucitol operon (AAC75749.1); Blastp hit to AAC75749.1 (257 aa), 94% identity in aa 1 - 257" /codon_start=1 /transl_table=11 /product="glucitol operon transcriptional repressor" /protein_id="NP_461758.1" /db_xref="GI:16766143" /db_xref="GeneID:1254360" /translation="MKPRQRQAAILEHLQKQGKCSVEELAQYFDTTGTTIRKDLVILE NAGTVIRTYGGVVLNKEESDPPIDHKTLINTHKKALIAAAAVKYIHDGDSIILDAGST VLQMVPLLSRFSNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENA FEQFSFDKLFMGTDGIDLNVGVTTFNEVYTVSNAMCNAAREVILMADSSKFGRKSPNV VCSLETVDKLITDAGIDPAFRQALEAKGIEVIITGESNE" gene 2982428..2983372 /gene="gutQ" /locus_tag="STM2838" /db_xref="GeneID:1254361" regulatory 2982428..2982433 /regulatory_class="ribosome_binding_site" /gene="gutQ" /locus_tag="STM2838" /note="putative RBS for gutQ; RegulonDB:STMS1H002904" CDS 2982446..2983372 /gene="gutQ" /locus_tag="STM2838" /note="similar to E. coli orf, hypothetical protein (AAC75750.1); Blastp hit to AAC75750.1 (308 aa), 92% identity in aa 1 - 308" /codon_start=1 /transl_table=11 /product="putative polysialic acid capsule expression protein" /protein_id="NP_461759.3" /db_xref="GI:1109557718" /db_xref="GeneID:1254361" /translation="MLELQEASRLPERLGDDFVRAANIIIHCEGKVIVSGIGKSGHIG KKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDK SVALLAMTGKLHSPLGRAAKAVLDISVEREACPMHLAPTSSTVNTLMMGDALAMAVMQ ARGFNEEDFARSHPAGALGARLLNNVHHLMRQGDAIPQVMLATSVMDAMLELSRTGLG LVAVCDEQHVVKGVFTDGDLRRWLVGGGALTTPVSEAMTPNGITLQAQSRAIDAKELL MKRKITAAPVVDENGKLTGAINLQDFYQAGII" gene complement(2983369..2984898) /gene="ygaA" /locus_tag="STM2839" /db_xref="GeneID:1254362" CDS complement(2983369..2984889) /gene="ygaA" /locus_tag="STM2839" /note="similar to E. coli putative 2-component transcriptional regulator (AAC75751.1); Blastp hit to AAC75751.1 (529 aa), 88% identity in aa 26 - 529" /codon_start=1 /transl_table=11 /product="nitric oxide reductase transcription regulator" /protein_id="NP_461760.1" /db_xref="GI:16766145" /db_xref="GeneID:1254362" /translation="MSFSVEVLAGIAIELQRGIGHQDRFQRLITTLRQVLACDASALL RYESRQFIPLAIDGLAQDVLGRRFTLEGHPRLEAIARAGDVVRFPADSDLPDPYDGLI PGQESLKVHACVGLPLFAGQNLIGALTLDAMTPEQFEVFSDEELRLVAALAAGALSNA LLIEQLESQNMLPGSSGVFEPIKETHMIGLSPAMTQLKKEIEIVAGSDLNVLIGGETG TGKELVAKAIHQGSPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLREE VLAGRFRADLFHRLSVFPLFVPPLRERGDDVVLLAGYFCEQCRLRLGLSRVVLSPGAR RHLLNYGWPGNVRELEHAIHRAVVLARATRAGDEVILEAQHFALSEDVLPAPPAESFL ALPTCRNLRESTENFQREMIRQALAQNNHNWAASARALETDVANLHRLAKRLGLKD" regulatory complement(2984893..2984898) /regulatory_class="ribosome_binding_site" /gene="ygaA" /locus_tag="STM2839" /note="putative RBS for ygaA; RegulonDB:STMS1H002905" gene 2985066..2986514 /locus_tag="STM2840" /db_xref="GeneID:1254363" regulatory 2985066..2985071 /regulatory_class="ribosome_binding_site" /locus_tag="STM2840" /note="putative RBS for STM2840; RegulonDB:STMS1H002906" CDS 2985075..2986514 /locus_tag="STM2840" /note="similar to E. coli putative flavodoxin (AAC75752.1); Blastp hit to AAC75752.1 (479 aa), 92% identity in aa 1 - 479" /codon_start=1 /transl_table=11 /product="nitric oxide reductase" /protein_id="NP_461761.1" /db_xref="GI:16766146" /db_xref="GeneID:1254363" /translation="MSILVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEK NVLIDTVDHKFSREFVQNLRSEIDLADIDYIIINHAEEDHAGALTELMAQIPDTPIYC TANAIDSINGHHHHPEWNFKVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYMTGDA VLFSNDAFGQHYCDERLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNL PVDMIATSHGVVWRDNPTQIVELYLKWATDYQEDRITIFYDTMSNNTRMMADAIAQGI NEVDPNVAVKIFNVARSDKNEILTNVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGLR FRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDLDALELCRQHGRDI ARQWALAPLPETTQQIAPVEETITCTAADLGPKMQCSVCQWIYDPALGEPLQDVAPGT PWNDVPDNFLCPECSLGKDVFDVLATEAK" gene 2986500..2987644 /gene="ygbD" /locus_tag="STM2841" /db_xref="GeneID:1254364" regulatory 2986500..2986505 /regulatory_class="ribosome_binding_site" /gene="ygbD" /locus_tag="STM2841" /note="putative RBS for ygbD; RegulonDB:STMS1H002907" CDS 2986511..2987644 /gene="ygbD" /locus_tag="STM2841" /note="similar to E. coli putative oxidoreductase (AAC75753.1); Blastp hit to AAC75753.1 (377 aa), 85% identity in aa 1 - 375" /codon_start=1 /transl_table=11 /product="FAD-dependent oxidoreductase" /protein_id="NP_461762.1" /db_xref="GI:16766147" /db_xref="GeneID:1254364" /translation="MSRGIIIIGSGFAARQLVKNIRKQDAHVPLTLIAADSMDEYNKP DLSHVISQSQRADDLTRQLAGEFAEQFNLRRFPHTWVADIDADAHVVKSQDKQWQYDK LVLATGATAFVPPIAGRELMLTLNSQQEYRACETQLRDAQRVLIVGGGLIGSELAMDF CRAGKTVTLMDNAASLLASLMPPEVSSRLQHHLTDMGVHLLLKSQLQKLEKTEAGIRA TLVSQHSIEVDAVIAATGLRPETALARRAGVAVNRGVCVDSYLQTSHPDIYAIGDCAE INGQVLPFLQPIQLSAMYLAKNLLGGNAPLKLPAMLVKVKTPELPLHLAGETQRRDLS WHITAESDGMIAKGMSGEGQLRAFVVSEDRMKEAFALLKTLSV" gene complement(2987741..2989997) /gene="hypF" /locus_tag="STM2842" /db_xref="GeneID:1254365" CDS complement(2987741..2989981) /gene="hypF" /locus_tag="STM2842" /note="similar to E. coli transcriptional regulatory protein (AAC75754.1); Blastp hit to AAC75754.1 (750 aa), 84% identity in aa 1 - 744" /codon_start=1 /transl_table=11 /product="carbamoyltransferase HypF" /protein_id="NP_461763.1" /db_xref="GI:16766148" /db_xref="GeneID:1254365" /translation="MAIDTPSGVQLRIRGKVQGVGFRPFVWQLAQQLRLHGDVCNDGD GVVVRLLEEPSQFIAALYQDCPPLARIDSVEHASLVWERAPTDFTIRQSAGGSMNTQI VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCP ECDSEYRDPYDRRFHAQPVACPSCGPHLEWRSQHERAEKEAALQAAVAQLNAGGIIAV KGLGGFHLACDARNANAVAMLRARKHRPAKPLAVMLPTAQTLPSAARSLLTTPAAPIV LVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQELNYPLVMTSGNLSGKPPAITN EQALDDLHDIADGFLLHNRDIVQRMDDSVVRDSGEMLRRSRGYVPDAIALPPGFRDVP PILCLGADLKNTFCLVRGAQAVVSQHLGDLSDDGIQAQWREALRLIQSIYDFTPERIV CDAHPGYVSSQWASEMRLPTETVLHHHAHAAACLAEHGWPLDGGEVIALTVDGIGMGE NGALWGGECLRVNYRECEHLGGLPAVALPGGDLAAKHPWRNLLAQCLRFVPDWQDYPE TAGLQQQNWNVLARAIERGVNAPLASSCGRLFDAVAAALRCAPASLSYEGEAACALEA LASQCANVEHPVTMPLNGAQLDVAVFWRQWLNWQATPAQRAWAFHDALACGFATLMRQ QATARGITTLVFSGGVIHNRLLRARLAFYLSDFKLLFPQRLPAGDGGLSFGQGVIAAA RALSEV" regulatory complement(2989992..2989997) /regulatory_class="ribosome_binding_site" /gene="hypF" /locus_tag="STM2842" /note="putative RBS for hypF; RegulonDB:STMS1H002908" gene complement(2990127..2990684) /gene="hydN" /locus_tag="STM2843" /db_xref="GeneID:1254366" CDS complement(2990127..2990672) /gene="hydN" /locus_tag="STM2843" /note="similar to E. coli involved in electron transport from formate to hydrogen, Fe-S centers (AAC75755.1); Blastp hit to AAC75755.1 (175 aa), 95% identity in aa 1 - 173" /codon_start=1 /transl_table=11 /product="electron transporter HydN" /protein_id="NP_461764.1" /db_xref="GI:16766149" /db_xref="GeneID:1254366" /translation="MNRFIIADASKCIGCRTCEVACVVSHQENQDCASLTPETFLPRI HVIKGVNVSTATLCRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYG AMEVVVRPVVRNSGAGLNVRAEKAEANKCDLCHHREAGPACMAACPTHALICVDRNKL EQLSAEKRRRAALDSTASLLF" regulatory complement(2990679..2990684) /regulatory_class="ribosome_binding_site" /gene="hydN" /locus_tag="STM2843" /note="putative RBS for hydN; RegulonDB:STMS1H002909" gene complement(2990873..2991687) /locus_tag="STM2844" /db_xref="GeneID:1254367" CDS complement(2990873..2991682) /locus_tag="STM2844" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461765.1" /db_xref="GI:16766150" /db_xref="GeneID:1254367" /translation="MLHGKGCKKDVKIIVWSGLLFLCLAARALATGVVGYLPMSDGEY AQKRALKPLLTLPYSVSPDQTWHFRQVGVSGVTLLPEPKKDNEWRISGKDRAGNSWVV PVGRLINLAGNAQFYRADLDRNGIQDLVIWLGNPGLGLAPSAQYIIFTFLKNGRPCVF EPWGFYTATDTGVDDLLDLQGNGRTQLLDMQFDSGYWITNLYQVKDARWQRVHGWFGR LSYPALTRFNHYPGRKLIIKPIAGRNPQTDDLSLTQRCLIRGNVLPGVNQD" regulatory complement(2991682..2991687) /regulatory_class="ribosome_binding_site" /locus_tag="STM2844" /note="putative RBS for STM2844; RegulonDB:STMS1H002910" gene complement(2991709..2992190) /gene="hycI" /locus_tag="STM2845" /db_xref="GeneID:1254368" CDS complement(2991709..2992179) /gene="hycI" /locus_tag="STM2845" /EC_number="3.4.-.-" /note="similar to E. coli protease involved in processing C-terminal end of the large subunit of hydrogenase 3 (AAC75759.1); Blastp hit to AAC75759.1 (156 aa), 91% identity in aa 1 - 155" /codon_start=1 /transl_table=11 /product="hydrogenase maturation peptidase HycI" /protein_id="NP_461766.1" /db_xref="GI:16766151" /db_xref="GeneID:1254368" /translation="MTDVLLCVGNSMMGDDGAGPLLAEMCAAQPKGNWVVIDGGSAPE NDIVAIRELRPQRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLK EDVGEVIFVGIQPDIVGFYYPMTQPIKDAVNIVYQRLEGWQGNGGFAALEAPEA" gene complement(2992172..2992596) /gene="hycH" /locus_tag="STM2846" /db_xref="GeneID:1254369" CDS complement(2992172..2992582) /gene="hycH" /locus_tag="STM2846" /note="part of the FHL complex; similar to E. coli processing of large subunit (HycE) of hydrogenase 3 (part of the FHL complex) (AAC75760.1); Blastp hit to AAC75760.1 (136 aa), 91% identity in aa 1 - 136" /codon_start=1 /transl_table=11 /product="formate hydrogenlyase maturation protein HycH" /protein_id="NP_461767.1" /db_xref="GI:16766152" /db_xref="GeneID:1254369" /translation="MSEQVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDC LEAALTCPWDEYLAWIATLEAGSDARRKMEGVPKYGEIVIDFNHVQMLARAFDEARAA QTPQQQEWSKLMLSMLYDIHQESAIYLMVRRLRD" regulatory complement(2992185..2992190) /regulatory_class="ribosome_binding_site" /gene="hycH" /locus_tag="STM2846" /note="putative RBS for hycI; RegulonDB:STMS1H002911" gene complement(2992579..2993357) /gene="hycG" /locus_tag="STM2847" /db_xref="GeneID:1254370" CDS complement(2992579..2993346) /gene="hycG" /locus_tag="STM2847" /note="similar to E. coli hydrogenase activity (AAC75761.1); Blastp hit to AAC75761.1 (255 aa), 96% identity in aa 1 - 255" /codon_start=1 /transl_table=11 /product="formate hydrogenlyase" /protein_id="NP_461768.1" /db_xref="GI:16766153" /db_xref="GeneID:1254370" /translation="MSNLLGPRDANGIPVPMTVDESIASMKASLLKNIKRSAYVYRVD CGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQS APDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL GLLEQKIHARAPGELDDQPAEILHPDMVQPLRVKVDRAARRLAGYRYGRQIADDYLTQ LGQGEQQVARWLEAENDPRLTEIVTHLNHVVEEARIR" regulatory complement(2992591..2992596) /regulatory_class="ribosome_binding_site" /gene="hycH" /locus_tag="STM2846" /note="putative RBS for hycH; RegulonDB:STMS1H002912" gene complement(2993346..2993899) /gene="hycF" /locus_tag="STM2848" /db_xref="GeneID:1254371" CDS complement(2993346..2993888) /gene="hycF" /locus_tag="STM2848" /note="similar to E. coli probable iron-sulfur protein of hydrogenase 3 (part of FHL complex) (AAC75762.1); Blastp hit to AAC75762.1 (180 aa), 96% identity in aa 1 - 178" /codon_start=1 /transl_table=11 /product="formate hydrogenlyase complex iron-sulfur subunit" /protein_id="NP_461769.1" /db_xref="GI:16766154" /db_xref="GeneID:1254371" /translation="MFTFIKKVIKTGTATSSYPLEPIAVDKNFRGKPEHNPQQCIGCA ACVNACPSNALTVETDLATNELAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWK KEDFLQQSRFALCNCRVCNRPFAVQKEIDYAIALLAHNGDSRAENHRESFETCPDCKR QKCLVPSDRIELTRHMKEVS" regulatory complement(2993352..2993357) /regulatory_class="ribosome_binding_site" /gene="hycF" /locus_tag="STM2848" /note="putative RBS for hycG; RegulonDB:STMS1H002913" regulatory complement(2993894..2993899) /regulatory_class="ribosome_binding_site" /gene="hycF" /locus_tag="STM2848" /note="putative RBS for hycF; RegulonDB:STMS1H002914" gene complement(2993898..2995607) /gene="hycE" /locus_tag="STM2849" /db_xref="GeneID:1254372" CDS complement(2993898..2995607) /gene="hycE" /locus_tag="STM2849" /note="part of FHL complex; similar to E. coli large subunit of hydrogenase 3 (part of FHL complex) (AAC75763.1); Blastp hit to AAC75763.1 (569 aa), 97% identity in aa 1 - 569" /codon_start=1 /transl_table=11 /product="hydrogenase 3 large subunit" /protein_id="NP_461770.1" /db_xref="GI:16766155" /db_xref="GeneID:1254372" /translation="MSEEKLGQQYLAALHQAFPGVVLDEAWQTKDQLTITVKVNYLPE VVEFLYYQQGGWLSVLFGNDERQLCGHYAVYYVLSMEQGTKCWITVRVEVDANKLEFP SVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPA PTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHR GMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILL EVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR RDLLKEDMIQTRQLAQQMRRDVQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGP MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTSLNMIDFGLD NLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT LRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNS PLK" gene complement(2995625..2996561) /gene="hycD" /locus_tag="STM2850" /db_xref="GeneID:1254373" CDS complement(2995625..2996548) /gene="hycD" /locus_tag="STM2850" /note="part of FHL complex; similar to E. coli membrane-spanning protein of hydrogenase 3 (part of FHL complex) (AAC75764.1); Blastp hit to AAC75764.1 (307 aa), 90% identity in aa 1 - 307" /codon_start=1 /transl_table=11 /product="hydrogenase 3 membrane subunit" /protein_id="NP_461771.1" /db_xref="GI:16766156" /db_xref="GeneID:1254373" /translation="MSVFYPLIQALVLFAVAPLLSGITRVVRARLHNRRGPGVLQEYR DIIKLLGRQSIAPADSGWVFRLTPFVMVGVMLTIATALPVVTVGSPLPQLGDLITLIY LFAIARFFFSIAGLDTGSPFTAIGASREAMLGVLVEPILLLGLWVAAQVAGSTHISNI ADTIYHWPVARSIPLILALCACAFATFIEMGKLPFDLAEAEQELQEGPLTEYSGSGFA VLKWGISLKQLVVLQMFVGVFLPWGQMETFSAGGLLLALVIAVVKLIVGVLVIALFEN SMARLRFCATSRVTWAGFGFAFLAFVSLLAA" gene complement(2996551..2998390) /gene="hycC" /locus_tag="STM2851" /db_xref="GeneID:1254374" CDS complement(2996551..2998377) /gene="hycC" /locus_tag="STM2851" /note="part of FHL complex; similar to E. coli membrane-spanning protein of hydrogenase 3 (part of FHL complex) (AAC75765.1); Blastp hit to AAC75765.1 (608 aa), 88% identity in aa 1 - 608" /codon_start=1 /transl_table=11 /product="formate hydrogenlyase subunit 3" /protein_id="NP_461772.2" /db_xref="GI:1109557719" /db_xref="GeneID:1254374" /translation="MSSLSLITSGVAWFAAAAVLAFLFSFHKALSGWIAGIGGAVGSL CTAGAGFTALTSAVTVSGVMPFTGHMLQITPLNAIWLITLGLCGLFVSLFNIDWHRHP QVKANGLLINLLMAAAVCAVVASNLGTMVVMAEIMALCAVFLTGGSKEGKLWFALGRL GTLLLAIACWLVWQRYGTLDLGLLDQRAQQLPLGSDIWLLGVIGFGLLAGIIPLHGWV PQAHANASAPAAALFSTVVMKIGLLGILTLSLLGGNAPLWWGVALLVLGMITAFVGGL YALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIALNQPVLIALGLTGGLYHLLNHSL FKSVLFLGAGSIWFRTGHRDIEKLGGIGKRMPVISIAMLVGLMAMAALPPLNGFAGEW VIYQSFFKLGNSGAFVGRLLGPLLAVGLAITGALAVMCMAKVYGVTFLGAPRTKEAEN ASCAPILMGVSVVALAICCVLGGVAAPWLLPMISTAVPLPLETAHTTVSQPMITLLLV ACPLLPFIIMAMFKGNRLPSRSRGAAWVCGYDHEQSMVITAHGFAMPVKEAFAPVLKL RKWLNPVSLIPGWQNAAAAVLFRRLALIELAVLVVIVVSRGA" regulatory complement(2996556..2996561) /regulatory_class="ribosome_binding_site" /gene="hycD" /locus_tag="STM2850" /note="putative RBS for hycD; RegulonDB:STMS1H002915" gene complement(2998377..2998997) /gene="hycB" /locus_tag="STM2852" /db_xref="GeneID:1254375" CDS complement(2998377..2998985) /gene="hycB" /locus_tag="STM2852" /note="part of FHL complex; similar to E. coli probable small subunit of hydrogenase-3, iron-sulfur protein (part of formate hydrogenlyase (FHL) complex) (AAC75766.1); Blastp hit to AAC75766.1 (203 aa), 95% identity in aa 1 - 202" /codon_start=1 /transl_table=11 /product="formate hydrogenlyase subunit 2" /protein_id="NP_461773.1" /db_xref="GI:16766158" /db_xref="GeneID:1254375" /translation="MNRFVIADSTLCIGCHTCEAACSETHRQHGLQSMPRLKVMLNEK ESAPQLCHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEFSGS RPLHIPANANTPKAPPAPPAPARVSTLLDWVPGVRAIAVKCDLCSFDEQGPACVRMCP TKALHLVENTDIARASKRKRELTFNTDFGDLTLFQQAQSGDA" regulatory complement(2998385..2998390) /regulatory_class="ribosome_binding_site" /gene="hycB" /locus_tag="STM2852" /note="putative RBS for hycC; RegulonDB:STMS1H002916" regulatory complement(2998992..2998997) /regulatory_class="ribosome_binding_site" /gene="hycB" /locus_tag="STM2852" /note="putative RBS for hycB; RegulonDB:STMS1H002917" gene complement(2999131..2999606) /gene="hycA" /locus_tag="STM2853" /db_xref="GeneID:1254376" CDS complement(2999131..2999592) /gene="hycA" /locus_tag="STM2853" /note="similar to E. coli transcriptional repression of hyc and hyp operons (AAC75767.1); Blastp hit to AAC75767.1 (153 aa), 88% identity in aa 1 - 152" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_461774.1" /db_xref="GI:16766159" /db_xref="GeneID:1254376" /translation="MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHH AMSCAPERDLCFVLFEHFRIYVALADGFNSHTIEYYVETKDGEDKQLIAQAQLDIDGK VDERVNNRDREQVLEHYLEKIASVYDSLYTAVETNSPVNLRQLVKGHSPAV" regulatory complement(2999601..2999606) /regulatory_class="ribosome_binding_site" /gene="hycA" /locus_tag="STM2853" /note="putative RBS for hycA; RegulonDB:STMS1H002918" protein_bind 2999730..2999752 /note="putative binding site for FNR, RegulonDB: STMS1H000157" /bound_moiety="FNR" gene 2999794..3000158 /gene="hypA" /locus_tag="STM2854" /db_xref="GeneID:1254377" regulatory 2999794..2999799 /regulatory_class="ribosome_binding_site" /gene="hypA" /locus_tag="STM2854" /note="putative RBS for hypA; RegulonDB:STMS1H002919" CDS 2999802..3000158 /gene="hypA" /locus_tag="STM2854" /note="functions as nickel donor for HycE of hydrogenlyase 3; similar to E. coli pleiotrophic effects on 3 hydrogenase isozymes (AAC75768.1); Blastp hit to AAC75768.1 (116 aa), 86% identity in aa 1 - 115" /codon_start=1 /transl_table=11 /product="hydrogenase maturation nickel metallochaperone HypA" /protein_id="NP_461775.1" /db_xref="GI:16766160" /db_xref="GeneID:1254377" /translation="MHEITLCQRALELIEQQASAYGAKRVTAVWIKIGAFSCVETSAL SFCFDLVCRGTIAEGCKLHLEEQEAECWCEHCQQYVTLLTHRVRRCPQCHSDTLRIVA DDGLQIRRIEIDETED" protein_bind 2999936..2999960 /gene="hypA" /locus_tag="STM2854" /note="putative binding site for FNR, RegulonDB: STMS1H000175" /bound_moiety="FNR" gene 3000215..3001099 /gene="hypB" /locus_tag="STM2855" /db_xref="GeneID:1254378" regulatory 3000215..3000220 /regulatory_class="ribosome_binding_site" /gene="hypB" /locus_tag="STM2855" /note="putative RBS for hypB; RegulonDB:STMS1H002920" CDS 3000227..3001099 /gene="hypB" /locus_tag="STM2855" /note="assembly of metallocenter; similar to E. coli guanine-nucleotide binding protein, functions as nickel donor for large subunit of hydrogenase 3 (AAC75769.1); Blastp hit to AAC75769.1 (290 aa), 94% identity in aa 1 - 290" /codon_start=1 /transl_table=11 /product="hydrogenase accessory protein HypB" /protein_id="NP_461776.1" /db_xref="GI:16766161" /db_xref="GeneID:1254378" /translation="MCTTCGCAEGNLYIEGDEHNPHSAFRSAPFAPAARPALNITGIK TPDFAPSQTAEGDLHYGHGEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFAAR QQLVLNLVSSPGSGKTTLLTETLMKLKDRVPCAVIEGDQQTVNDAARIRATGTPAIQV NTGKGCHLDAQMIADAAPRLPLDDHGILFIENVGNLVCPASFDLGEKHKVAVLSVTEG EDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIASAREVNPEIEIILISATSGEG MDQWLAWLEAQRCA" gene 3001076..3001362 /gene="hypC" /locus_tag="STM2856" /db_xref="GeneID:1254379" regulatory 3001076..3001081 /regulatory_class="ribosome_binding_site" /gene="hypC" /locus_tag="STM2856" /note="putative RBS for hypC; RegulonDB:STMS1H002921" CDS 3001090..3001362 /gene="hypC" /locus_tag="STM2856" /note="similar to E. coli pleiotrophic effects on 3 hydrogenase isozymes (AAC75770.1); Blastp hit to AAC75770.1 (90 aa), 96% identity in aa 1 - 90" /codon_start=1 /transl_table=11 /product="hydrogenase assembly chaperone" /protein_id="NP_461777.1" /db_xref="GI:16766162" /db_xref="GeneID:1254379" /translation="MCIGVPGQIRAIDGNQAKVDVCGIQRDVDLTLVGSCDENGQPRL GQWVLVHVGFAMSVINEAEARDTLDALQNMFDVEPDVGALLYGEER" gene 3001351..3002483 /gene="hypD" /locus_tag="STM2857" /db_xref="GeneID:1254380" regulatory 3001351..3001356 /regulatory_class="ribosome_binding_site" /gene="hypC" /locus_tag="STM2856" /note="putative RBS for hypD; RegulonDB:STMS1H002922" CDS 3001362..3002483 /gene="hypD" /locus_tag="STM2857" /note="similar to E. coli pleiotrophic effects on 3 hydrogenase isozymes (AAC75771.1); Blastp hit to AAC75771.1 (373 aa), 94% identity in aa 1 - 372" /codon_start=1 /transl_table=11 /product="putative hydrogenase expression/formation protein" /protein_id="NP_461778.2" /db_xref="GI:1109557720" /db_xref="GeneID:1254380" /translation="MRFVDEYRAPEQVMQLIEHLRERAALLPYTAERPLRIMEVCGGH THAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDSCVEIASHPEVIFCTFGDAMRV PGKQGSLLQAKARGADVRIVYSPMDALKLAQDNPTRKVVFFGLGFETTMPTTAITLQQ AKQRDVRNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTEAYQFIAADF HRPLVVAGFEPLDLLQGVVMLVEQKIAALSQVENQYRRVVPDAGNMLAQQAIADVFCV NGDSEWRGLGVIESSGVHLTPEYQRFDAEAHFRPAPQQVYDDPRARCGEVLTGRCKPH QCPLFGKTCNPETAFGALMVSSEGACAAWYQYRQQECEV" gene 3002516..3003490 /gene="hypE" /locus_tag="STM2858" /db_xref="GeneID:1254381" regulatory 3002516..3002521 /regulatory_class="ribosome_binding_site" /gene="hypE" /locus_tag="STM2858" /note="putative RBS for hypE; RegulonDB:STMS1H002923" CDS 3002522..3003490 /gene="hypE" /locus_tag="STM2858" /note="similar to E. coli plays structural role in maturation of all 3 hydrogenases (AAC75772.1); Blastp hit to AAC75772.1 (322 aa), 91% identity in aa 1 - 322" /codon_start=1 /transl_table=11 /product="putative hydrogenase expression/formation protein" /protein_id="NP_461779.3" /db_xref="GI:1109557721" /db_xref="GeneID:1254381" /translation="MQQLINSLFMEAFANPWLAEQEDQARLELAQLTAEGDRLAFSTD SYVIDPLFFPGGNIGKLAICGTANDVAVSGAIPRYLSCGFILEEGLPMETLKSVVNSM AATAREADIAIVTGDTKVVQRGAADKLFINTAGMGAIPADIRWGAQTLSVGDVLLVSG TLGDHGATILNLREQLGLDGELASDCAVLTPLIQTLRHIDGVKALRDATRGGVNAVAH EFAASCGYGIELSESALPLKPAVRGVCELLGLDALNFANEGKLVIAVERQAADRALAA LRAHPLGRDAALIGEVVERKGVRLAGLYGVKRTLDLPHAEPLPRIC" gene 3003696..3005787 /gene="fhlA" /locus_tag="STM2859" /db_xref="GeneID:1254382" regulatory 3003696..3003701 /regulatory_class="ribosome_binding_site" /gene="fhlA" /locus_tag="STM2859" /note="putative RBS for fhlA; RegulonDB:STMS1H002924" CDS 3003709..3005787 /gene="fhlA" /locus_tag="STM2859" /note="EBP family; formate hydrogenlyase transcriptional activator. (SW:FHLA_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional regulator FhlA" /protein_id="NP_461780.1" /db_xref="GI:16766165" /db_xref="GeneID:1254382" /translation="MSYTPMSDLGQQGLFDITRTLLQQPDLASLSEALSQLVKRSALA DSAGIVLWQAQSQRAQYYATRENGRPVEYEDETVLAHGPVRRILSRPDALHCNFHEFT ETWPQLAASGLYPEFGHYCLLPLAAEGRIFGGCEFIRQEDRPWSEKEYDRLHTFTQIV GVVAEQIQNRVNNNVDYDLLCRERDNFRILVAITNAVLSRLDIDELVSEVAKEIHHYF NIDAISIVLRSHRKNKLNIYSTHYLDEHHPAHEQSEVDEAGTLTERVFKSKEMLLINL NERDPLAPYERMLFDTWGNQIQTLCLLPLMSGKTMLGVLKLAQCEEKVFTTANLKLLR QIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYNVL KQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRSGRRMVKMNCAAMPAGLLESDL FGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN KLIQTDVRLIAATNRDLKKMVADREFRNDLYYRLNVFPIQLPPLRERPEDIPLLVKAF TFKIARRMGRNIDSIPAETLRTLSSMEWPGNVRELENVVERAVLLTRGNVLQLSLPDI TAVTPDTSPVATESDKEGEDEYQLIIRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMK RLGIDKDALA" gene complement(3005849..3006207) /gene="ygbA" /locus_tag="STM2860" /db_xref="GeneID:1254383" CDS complement(3005849..3006193) /gene="ygbA" /locus_tag="STM2860" /note="similar to E. coli orf, hypothetical protein (AAC75774.1); Blastp hit to AAC75774.1 (117 aa), 86% identity in aa 1 - 114" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461781.1" /db_xref="GI:16766166" /db_xref="GeneID:1254383" /translation="MPGKRIAREKLTIKKMIALYESQCPQASTVQGHYDALFAYAQKR LDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPVLTVRHLIDDKRP VPELPEKYQRKK" regulatory complement(3006202..3006207) /regulatory_class="ribosome_binding_site" /gene="ygbA" /locus_tag="STM2860" /note="putative RBS for ygbA; RegulonDB:STMS1H002925" gene 3006369..3007292 /gene="sitA" /locus_tag="STM2861" /db_xref="GeneID:1254384" regulatory 3006369..3006374 /regulatory_class="ribosome_binding_site" /gene="sitA" /locus_tag="STM2861" /note="putative RBS for sitA; RegulonDB:STMS1H002926" CDS 3006375..3007292 /gene="sitA" /locus_tag="STM2861" /note="SitA (gi|5231094)" /codon_start=1 /transl_table=11 /product="iron ABC transporter substrate-binding protein" /protein_id="NP_461782.1" /db_xref="GI:16766167" /db_xref="GeneID:1254384" /translation="MTNLHRLKTLLIAGIVAILALSPAYAKEKFKVITTFTVIADMAK NVAGDAAEVSSITKPGAEIHEYQPTPGDIKRAQGAQLILANGLNLERWFARFYQHLSG VPEVVVSTGVKPMGITEGPYNGKPNPHAWMSAENALIYVDNIRDALVKYDPDNAQIYK QNAERYKAKIRQMADPLRAELEKIPADQRWLVTSEGAFSYLARDNDMKELYLWPINAD QQGTPKQVRKVIDTIKKHHIPAIFSESTVSDKPARQVARESGAHYGGVLYVDSLSAAD GPVPTYLDLLRVTTETIVNGINDGLRSQQ" gene 3007281..3008110 /gene="sitB" /locus_tag="STM2862" /db_xref="GeneID:1254385" regulatory 3007281..3007286 /regulatory_class="ribosome_binding_site" /gene="sitB" /locus_tag="STM2862" /note="putative RBS for sitB; RegulonDB:STMS1H002927" CDS 3007289..3008110 /gene="sitB" /locus_tag="STM2862" /note="SitB (gi|5231095)" /codon_start=1 /transl_table=11 /product="manganese/iron transporter ATP-binding protein" /protein_id="NP_461783.1" /db_xref="GI:16766168" /db_xref="GeneID:1254385" /translation="MSQSAITVDQVTVTYRNGHTALRDATFQVPGGSIAALVGVNGSG KSTLFKALMGFVHLAQGDITILQQSVNKALKKNLIAYVPQSEEVDWSFPVLVEDVVMM GRYGHMGWLRRPTAHDHACVDAALARVDMQEYRHRQIGELSGGQKKRVFLARAIAQDG QVILLDEPFTGVDVKTEARIIDLLRELRDEGRTMLVSTHNLGSVTEFCDYTVMIKGTV LASGPTETTFTAANLEQAFSGVLRHIALSGGEEHIITDDERPFISRRVASGGKSS" gene 3008100..3008967 /gene="sitC" /locus_tag="STM2863" /db_xref="GeneID:1254386" regulatory 3008100..3008105 /regulatory_class="ribosome_binding_site" /gene="sitB" /locus_tag="STM2862" /note="putative RBS for sitC; RegulonDB:STMS1H002928" CDS 3008107..3008967 /gene="sitC" /locus_tag="STM2863" /note="SitC (gi|5231096)" /codon_start=1 /transl_table=11 /product="iron ABC transporter permease" /protein_id="NP_461784.1" /db_xref="GI:16766169" /db_xref="GeneID:1254386" /translation="MNWLVEPFGYQYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGD ALSHSIVPGVAGAWMLGLPFSLGAFLSGGLAAGSMLFLNQRSRLKEDAIIGLIFSSFF GVGLFMVSLNPMSVNIQTIILGNVLAIAPADIAQLAIIGAVSLTILLLKWKDLMVVFF DETHARSIGLNPGRLKLLFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFP RLLMIAVVIGSLTSFLGAWLSYWLDGATGGIIVVMQTLLFITAFIFAPKHGLLANRRR ARLQKEPTCS" gene 3008951..3009806 /gene="sitD" /locus_tag="STM2864" /db_xref="GeneID:1254387" regulatory 3008951..3008956 /regulatory_class="ribosome_binding_site" /gene="sitD" /locus_tag="STM2864" /note="putative RBS for sitD; RegulonDB:STMS1H002929" CDS 3008958..3009806 /gene="sitD" /locus_tag="STM2864" /note="SitD (gi|5231097)" /codon_start=1 /transl_table=11 /product="iron ABC transporter permease" /protein_id="NP_461785.1" /db_xref="GI:16766170" /db_xref="GeneID:1254387" /translation="MFLTTLLEPFQFDFMVNALMVSVIVAIPCALLSVFLVLKGWALM GDAMSHAVFPGVVLAYIVGIPLAIGAFIAGLFCAIATGYLDDNSRIKRDTVMGIVFSG MFGAGLVLYVSIQSEVHLDHILFGDMLGVSLGDIVQTSVIALGIALIIGLKWKDLLLH AFDPHQAKASGLNTTLLHYGLLCMIALTIVATLKSVGIILSISLLIAPGAIAILLTRR FARALGLAVSLSVITAFAGVYLSFYLDSAPAPTIVVLFAIVFIAAFIYATWRDRRNEI VPEAQG" gene complement(3009905..3010816) /gene="avrA" /locus_tag="STM2865" /db_xref="GeneID:1254388" CDS complement(3009905..3010813) /gene="avrA" /locus_tag="STM2865" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461786.1" /db_xref="GI:16766171" /db_xref="GeneID:1254388" /translation="MIFSVQELSCGGKSMLSPTTRNMGASLSPQPDVSGELNTEALTC IVERLESEIIDGSWIHISYEETDLEMMPFLVAQANKKYPELNLKFVMSVHELVSSIKE TRMEGVESARFLVNMGSSGIHISVVDFRVMDGKTSVILFEPAACSAFGPALLALRTKA ALEREQLPDCYFAMVELDIQRSSSECGIFSLALAKKLQLEFMNLVKIHEDNICERLCG EEPFLPSDKADRYLPVSFYKHTQGAQRLNEYVEANPAAGSSIVNKKNETLYERFDNNA VMLNDKKLSISAHKKRIAEYKSLLKP" regulatory complement(3010811..3010816) /regulatory_class="ribosome_binding_site" /gene="avrA" /locus_tag="STM2865" /note="putative RBS for avrA; RegulonDB:STMS1H002930" gene complement(3010974..3011735) /gene="sprB" /locus_tag="STM2866" /db_xref="GeneID:1254389" CDS complement(3010974..3011729) /gene="sprB" /locus_tag="STM2866" /note="transcriptional regulator SprB (gi|5007028)" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_461787.1" /db_xref="GI:16766172" /db_xref="GeneID:1254389" /translation="MRNVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLS DMPDAGLILALNPHEHVYLFHALLTRLQNRKVLVVADRLYYIDRCVLQYFGVMDYVLK DELSCAIRSEREKLRLPEAWLRFCHRPQKKTVAATYAFNAGETPEEVLFNINQYAWWN LPPGVTQAKYALLILLSSGHPAIELAKKFGLGTKTVSIYRKKVMYRLGMDSSPLSLFR GLKLDAHLQRTAFAHNPAVPDDNCALPIAVGMN" regulatory complement(3011730..3011735) /regulatory_class="ribosome_binding_site" /gene="sprB" /locus_tag="STM2866" /note="putative RBS for sprB; RegulonDB:STMS1H002931" gene complement(3012114..3013008) /gene="hilC" /locus_tag="STM2867" /db_xref="GeneID:1254390" CDS complement(3012114..3013001) /gene="hilC" /locus_tag="STM2867" /note="HilC (gi|4455106)" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="NP_461788.1" /db_xref="GI:16766173" /db_xref="GeneID:1254390" /translation="MVLPSMNKSVEAISNNHLQQPNKFPLINGLADVRDYYVANCLLF KLNKGSLRIENEFGEFIERSAPCLFLLEKDQTITLSMSEIEGHIDFSSLEVSYDLMQK FYKVFYSTRNYNDRELSLKTKPKYFFHADLLPGMSDTFDSILHGVACPRVCSNVSIDD HDYSYFSLMYLISAFVRKPGGFDFLERAIKITTKEKVYNIIISDLTRKWSQAEVAGKL FMSVSSLKRKLAAEEVSFSKIYLDARMNQAIKLLRMGAGNISQVATMCGYDTPSYFIA IFKRHFKITPLSFMRTMNH" regulatory complement(3013003..3013008) /regulatory_class="ribosome_binding_site" /gene="hilC" /locus_tag="STM2867" /note="putative RBS for hilC; RegulonDB:STMS1H002932" gene complement(3013346..3013804) /locus_tag="STM2868" /db_xref="GeneID:1254391" CDS complement(3013346..3013798) /locus_tag="STM2868" /codon_start=1 /transl_table=11 /product="type III secretion system effector protein OrgC" /protein_id="NP_461789.1" /db_xref="GI:16766174" /db_xref="GeneID:1254391" /translation="MIPGTIPTSYLVPTADTEATGVVSLSARAAMLNNMDSAPLSNGG DVDLYDAFYQRLLALPESASSETLKDSIYQEMNAFKDPNSGDSAFVSFEQQTAMLQNM LAKVEPGTHLYEALNGVLVGSMNAQSQMTSWMQEIILSGGENKEAIDW" gene complement(3013795..3014479) /gene="orgA" /locus_tag="STM2869" /db_xref="GeneID:1254392" CDS complement(3013795..3014475) /gene="orgA" /locus_tag="STM2869" /note="oxygen-regulated invasion protein ORGA. (SW:ORGA_SALTY)" /codon_start=1 /transl_table=11 /product="invasion protein OrgB" /protein_id="NP_461790.1" /db_xref="GI:16766175" /db_xref="GeneID:1254392" /translation="MLKNIPIPSPLSPVEGILIKRKTLERYFSIERLEQQAHQRAKRI LREAEEEAKTLRMYAYQEGYEQGMIDALQQVAAYLTDNQTMAWKWMEKIQIYARELFS AAVDHPETLLTVLDEWLRDFDKPEGQLFLTLPVNAKKDHQKLMVLLMENWPGTFNLKY HQEQRFIMSCGDQIAEFSPEQFVETAVGVIKHHLDELPQDCRTISDNAINALIDEWKT KTQAEVIR" regulatory complement(3013799..3013804) /regulatory_class="ribosome_binding_site" /locus_tag="STM2868" /note="putative RBS for STM2868; RegulonDB:STMS1H002933" gene complement(3014432..3015046) /locus_tag="STM2870" /db_xref="GeneID:1254393" CDS complement(3014432..3015031) /locus_tag="STM2870" /note="oxygen-regulated invasion protein ORGA. (SW:ORGA_SALTY)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461791.1" /db_xref="GI:16766176" /db_xref="GeneID:1254393" /translation="MIRRNRQMNRQPLPIIWQRIIFDPLSYIHPQRLQIAPEMIVRPA ARAAANELILAAWRLKNGEKECIQNSLTQLWLRQWRRLPQVAYLLGCHKLRADLARQG ALLGLPDWAQAFLAMHQGTSLSVCNKAPNHRFLLSVGYAQLNALNEFLPESLAQRFPL LFPPFIEEALKQDAVEMSILLLALQYAQKYPNTVPAFAC" regulatory complement(3014474..3014479) /regulatory_class="ribosome_binding_site" /locus_tag="STM2870" /note="putative RBS for orgA; RegulonDB:STMS1H002934" gene complement(3015003..3015761) /gene="prgK" /locus_tag="STM2871" /db_xref="GeneID:1254394" CDS complement(3015003..3015761) /gene="prgK" /locus_tag="STM2871" /note="lipoprotein; may link inner and outer membranes; PRGK protein precursor. (SW:PRGK_SALTY)" /codon_start=1 /transl_table=11 /product="EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein" /protein_id="NP_461792.1" /db_xref="GI:16766177" /db_xref="GeneID:1254394" /translation="MIRRYLYTFLLVMTLAGCKDKDLLKGLDQEQANEVIAVLQMHNI EANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPRVEIAQMFPADSLVSSPRAEK ARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDAGENGRPPKPVHLSALAVYERGSPL AHQISDIKRFLKNSFADVDYDNISVVLSERSDAQLQAPGTPVKRNSFATSWIVLIILL SVMSAGFGVWYYKNHYARNKKGITADDKAKSSNE" regulatory complement(3015041..3015046) /regulatory_class="ribosome_binding_site" /locus_tag="STM2870" /note="putative RBS for STM2870; RegulonDB:STMS1H002935" gene complement(3015758..3016069) /gene="prgJ" /locus_tag="STM2872" /db_xref="GeneID:1254395" CDS complement(3015758..3016063) /gene="prgJ" /locus_tag="STM2872" /note="PRGJ protein. (SW:PRGJ_SALTY)" /codon_start=1 /transl_table=11 /product="type III secretion system protein PrgJ" /protein_id="NP_461793.1" /db_xref="GI:16766178" /db_xref="GeneID:1254395" /translation="MSIATIVPENAVIGQAVNIRSMETDIVSLDDRLLQAFSGSAIAT AVDKQTITNRIEDPNLVTDPKELAISQEMISDYNLYVSMVSTLTRKGVGAVETLLRS" regulatory complement(3016064..3016069) /regulatory_class="ribosome_binding_site" /gene="prgJ" /locus_tag="STM2872" /note="putative RBS for prgJ; RegulonDB:STMS1H002936" gene complement(3016082..3016331) /gene="prgI" /locus_tag="STM2873" /db_xref="GeneID:1254396" CDS complement(3016082..3016324) /gene="prgI" /locus_tag="STM2873" /note="PRGI protein. (SW:PRGI_SALTY)" /codon_start=1 /transl_table=11 /product="EscF/YscF/HrpA family type III secretion system needle major subunit" /protein_id="NP_461794.1" /db_xref="GI:16766179" /db_xref="GeneID:1254396" /translation="MATPWSGYLDDVSAKFDTGVDNLQTQVTEALDKLAAKPSDPALL AAYQSKLSEYNLYRNAQSNTVKVFKDIDAAIIQNFR" regulatory complement(3016326..3016331) /regulatory_class="ribosome_binding_site" /gene="prgI" /locus_tag="STM2873" /note="putative RBS for prgI; RegulonDB:STMS1H002937" gene complement(3016349..3017527) /gene="prgH" /locus_tag="STM2874" /db_xref="GeneID:1254397" CDS complement(3016349..3017527) /gene="prgH" /locus_tag="STM2874" /note="PRGH protein. (SW:PRGH_SALTY)" /codon_start=1 /transl_table=11 /product="type III secretion system protein PrgH" /protein_id="NP_461795.1" /db_xref="GI:16766180" /db_xref="GeneID:1254397" /translation="METSKEKTITSPGPYIVRLLNSSLNGCEFPLLTGRTLFVVGQSD ALTASGQLPDIPADSFFIPLDHGGVNFEIQVDTDATEIILHELKEGNSESRSVQLNTP IQVGELLILIRPESEPWVPEQPEKLETSAKKNEPRFKNGIVAALAGFFILGIGTVGTL WILNSPQRQAAELDSLLGQEKERFQVLPGRDKMLYVAAQNERDTLWARQVLARGDYDK NARVINENEENKRISIWLDTYYPQLAYYRIHFDEPRKPVFWLSRQRNTMSKKELEVLS QKLRALMPYADSVNITLMDDVTAAGQAEAGLKQQALPYSRRNHKGGVTFVIQGALDDV EILRARQFVDSYYRTWGGRYVQFAIELKDDWLKGRSFQYGAEGYIKMSPGHWYFPSPL " gene 3017838..3018772 /gene="hilD" /locus_tag="STM2875" /db_xref="GeneID:1254398" regulatory 3017838..3017843 /regulatory_class="ribosome_binding_site" /gene="hilD" /locus_tag="STM2875" /note="putative RBS for hilD; RegulonDB:STMS1H002938" CDS 3017843..3018772 /gene="hilD" /locus_tag="STM2875" /note="HilD (gi|4455108)" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="NP_461796.1" /db_xref="GI:16766181" /db_xref="GeneID:1254398" /translation="MENVTFVSNSHQRPAADNLQKLKSLLTNTRQQIKSQTQQVTIKN LYVSSFTLVCFRSGKLTISNNHDTIYCDEPGMLVLKKEQVVNVTLEEVNGHMDFDILE IPTQRLGALYALIPNEQQTKMAVPTEKAQKIFYTPDFPARREVFEHLKTAFSCTKDTS KGCSNCNNKSCIENEELIPYFLLFLLTAFLRLPESYEIILSSAQITLKERVYNIISSS PSRQWKLTDVADHIFMSTSTLKRKLAEEGTSFSDIYLSARMNQAAKLLRIGNHNVNAV ALKCGYDSTSYFIQCFKKYFKTTPSTFIKMANH" gene 3019846..3021524 /gene="hilA" /locus_tag="STM2876" /db_xref="GeneID:1254399" regulatory 3019846..3019851 /regulatory_class="ribosome_binding_site" /gene="hilA" /locus_tag="STM2876" /note="putative RBS for hilA; RegulonDB:STMS1H002939" CDS 3019863..3021524 /gene="hilA" /locus_tag="STM2876" /note="invasion protein IAGA (protein HILA). (SW:IAGA_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_461797.1" /db_xref="GI:16766182" /db_xref="GeneID:1254399" /translation="MPHFNPVPVSNKKFVFDDFILNMDGSLLRSEKKVNIPPKEYAVL VILLEAAGEIVSKNTLLDQVWGDAEVNEESLTRCIYALRRILSEDKEHRYIETLYGQG YRFNRPVVVVSPPAPQPTTHTLAILPFQMQDQVQSESLHYSIVKGLSQYAPFGLSVLP VTITKNCRSVKDILELMDQLRPDYYISGQMIPDGNDNIVQIEIVRVKGYHLLHQESIK LIEHQPASLLQNKIANLLLRCIPGLRWDTKQISELNSIDSTMVYLRGKHELNQYTPYS LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEAL QTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF LSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTIREFLESEQRIDN NPGLLPLVLVAHGEAIAEKMWNKFKNEDNIWFKRWKQDPRLIKLR" gene 3021534..3022024 /gene="iagB" /locus_tag="STM2877" /db_xref="GeneID:1254400" regulatory 3021534..3021539 /regulatory_class="ribosome_binding_site" /gene="iagB" /locus_tag="STM2877" /note="putative RBS for iagB; RegulonDB:STMS1H002940" CDS 3021542..3022024 /gene="iagB" /locus_tag="STM2877" /note="invasion protein IAGB precursor. (SW:IAGB_SALTY)" /codon_start=1 /transl_table=11 /product="invasion protein IagB" /protein_id="NP_461798.1" /db_xref="GI:16766183" /db_xref="GeneID:1254400" /translation="MHYFFIIVIWLLSINTAWADCWLQAEKMFNIESELLYAIAQQES AMKPGAIGHNRDGSTDLGLMQINSFHMKRLKKMGISEKQLLQDPCISVIVGASILSDM MKIYGYSWEAVGAYNAGTSPKRSDIRKRYAKKIWENYRKLKGMSAEEKNKRLSIAANK " gene complement(3022078..3023717) /gene="sptP" /locus_tag="STM2878" /db_xref="GeneID:1254401" CDS complement(3022078..3023709) /gene="sptP" /locus_tag="STM2878" /note="protein tyrosine phosphatase SptP (gi|1519054)" /codon_start=1 /transl_table=11 /product="pathogenicity island 1 effector protein StpP" /protein_id="NP_461799.1" /db_xref="GI:16766184" /db_xref="GeneID:1254401" /translation="MLKYEERKLNNLTLSSFSKVGVSNDARLYIAKENTDKAYVAPEK FSSKVLTWLGKMPLFKNTEVVQKHTENIRVQDQKILQTFLHALTEKYGETAVNDALLM SRINMNKPLTQRLAVQITECVKAADEGFINLIKSKDNVGVRNAALVIKGGDTKVAEKN NDVGAESKQPLLDIALKGLKRTLPQLEQMDGNSLRENFQEMASGNGPLRSLMTNLQNL NKIPEAKQLNDYVTTLTNIQVGVARFSQWGTCGGEVERWVDKASTHELTQAVKKIHVI AKELKNVTAELEKIEAGAPMPQTMSGPTLGLARFAVSSIPINQQTQVKLSDGMPVPVN TLTFDGKPVALAGSYPKNTPDALEAHMKMLLEKECSCLVVLTSEDQMQAKQLPPYFRG SYTFGEVHTNSQKVSSASQGEAIDQYNMQLSCGEKRYTIPVLHVKNWPDHQPLPSTDQ LEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQV RADFRDSRNNRMLEDASQFVQLKAMQAQLLMTTAS" gene complement(3023696..3024095) /gene="sicP" /locus_tag="STM2879" /db_xref="GeneID:1254402" CDS complement(3023696..3024088) /gene="sicP" /locus_tag="STM2879" /note="SicP (gi|3283218)" /codon_start=1 /transl_table=11 /product="chaperone protein SicP" /protein_id="NP_461800.1" /db_xref="GI:16766185" /db_xref="GeneID:1254402" /translation="MQAHQDIIANIGEKLGLPLTFDDNNQCLLLLDSDIFTSIEAKDD IWLLNGMIIPLSPVCGDSIWRQIMVINGELAANNEGTLAYIDAAETLLLIHAITDLTN TYHIISQLESFVNQQEALKNILQEYAKV" regulatory complement(3023712..3023717) /regulatory_class="ribosome_binding_site" /gene="sicP" /locus_tag="STM2879" /note="putative RBS for sptP; RegulonDB:STMS1H002941" regulatory complement(3024090..3024095) /regulatory_class="ribosome_binding_site" /gene="sicP" /locus_tag="STM2879" /note="putative RBS for sicP; RegulonDB:STMS1H002942" gene complement(3024115..3024375) /locus_tag="STM2880" /db_xref="GeneID:1254403" CDS complement(3024115..3024375) /locus_tag="STM2880" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_449260.1" /db_xref="GI:1109557722" /db_xref="GeneID:1254403" /translation="MKIITHVVPGSGMAAIYDDIADSSRFVIKGKLRHVENDPKELLI CVPMRSEWLFYWIKGEKYCARRWARKSIKTLCNQIKFEEAIL" gene complement(3024419..3024672) /gene="iacP" /locus_tag="STM2881" /db_xref="GeneID:1254404" CDS complement(3024419..3024667) /gene="iacP" /locus_tag="STM2881" /note="acyl carrier protein (gi|1172129)" /codon_start=1 /transl_table=11 /product="putative acyl carrier protein" /protein_id="NP_461802.1" /db_xref="GI:16766187" /db_xref="GeneID:1254404" /translation="MNMDIEARVKKVITSCIAVDVDSINGQTHLVEDLYADSLDLIDI VFGLSEEFDISCNENDLPDMMTFADICRVVKKSLESRV" regulatory complement(3024667..3024672) /regulatory_class="ribosome_binding_site" /gene="iacP" /locus_tag="STM2881" /note="putative RBS for iacP; RegulonDB:STMS1H002943" gene complement(3024686..3026750) /gene="sipA" /locus_tag="STM2882" /db_xref="GeneID:1254405" CDS complement(3024686..3026743) /gene="sipA" /locus_tag="STM2882" /note="SipA (gi|1172128)" /codon_start=1 /transl_table=11 /product="pathogenicity island 1 effector protein SipA" /protein_id="NP_461803.1" /db_xref="GI:16766188" /db_xref="GeneID:1254405" /translation="MVTSVRTQPPVIMPGMQTEIKTQATNLAANLSAVRESATATLSG EIKGPQLEDFPALIKQASLDALFKCGKDAEALKEVFTNSNNVAGKKAIMEFAGLFRSA LNATSDSPEAKTLLMKVGAEYTAQIIKDGLKEKSAFGPWLPETKKAEAKLENLEKQLL DIIKNNTGGELSKLSTNLVMQEVMPYIASCIEHNFGCTLDPLTRSNLTHLVDKAAAKA VEALDMCHQKLTQEQGTSVGREARHLEMQTLIPLLLRNVFAQIPADKLPDPKIPEPAA GPVPDGGKKAEPTGINININIDSSNHSVDNSKHINNSRSHVDNSQRHIDNSNHDNSRK TIDNSRTFIDNSQRNGESHHSTNSSNVSHSHSRVDSTTHQTETAHSASTGAIDHGIAG KIDVTAHATAEAVTNASSESKDGKVVTSEKGTTGETTSFDEVDGVTSKSIIGKPVQAT VHGVDDNKQQSQTAEIVNVKPLASQLAGVENVKTDTLQSDTTVITGNKAGTTDNDNSQ TDKTGPFSGLKFKQNSFLSTVPSVTNMHSMHFDARETFLGVIRKALEPDTSTPFPVRR AFDGLRAEILPNDTIKSAALKAQCSDIDKHPELKAKMETLKEVITHHPQKEKLAEIAL QFAREAGLTRLKGETDYVLSNVLDGLIGDGSWRAGPAYESYLNKPGVDRVITTVDGLH MQR" regulatory complement(3026745..3026750) /regulatory_class="ribosome_binding_site" /gene="sipA" /locus_tag="STM2882" /note="putative RBS for sipA; RegulonDB:STMS1H002944" gene complement(3026762..3027799) /gene="sipD" /locus_tag="STM2883" /db_xref="GeneID:1254406" CDS complement(3026762..3027793) /gene="sipD" /locus_tag="STM2883" /note="sspD protein (gi|7443300)" /codon_start=1 /transl_table=11 /product="cell invasion protein SipD" /protein_id="NP_461804.1" /db_xref="GI:16766189" /db_xref="GeneID:1254406" /translation="MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTD IISLSQAATKIHQAQQTLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQN ENLRSAFSAPTSALFSASPMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVY TDFYQAFSDILSKMGGWLLPGKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQ SGSGVKVATEAEARQWLSELNLPNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGK DSKLEMDNAKYQAWQSGFKAQEENMKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSL ETAKSFLQG" regulatory complement(3027794..3027799) /regulatory_class="ribosome_binding_site" /gene="sipD" /locus_tag="STM2883" /note="putative RBS for sipD; RegulonDB:STMS1H002945" gene complement(3027864..3029098) /gene="sipC" /locus_tag="STM2884" /db_xref="GeneID:1254407" CDS complement(3027864..3029093) /gene="sipC" /locus_tag="STM2884" /note="sspC protein (gi|7443298)" /codon_start=1 /transl_table=11 /product="pathogenicity island 1 effector protein SipC" /protein_id="NP_461805.1" /db_xref="GI:16766190" /db_xref="GeneID:1254407" /translation="MLISNVGINPAAYLNNHSVENSSQTASQSVSAKDILNSIGISSS KVSDLGLSPTLSAPAPGVLTQTPGTITSFLKASIQNTDMNQDLNALANNVTTKANEVV QTQLREQQAEVGKFFDISGMSSSAVALLAAANTLMLTLNQADSKLSGKLSLVSFDAAK TTASSMMREGMNALSGSISQSALQLGITGVGAKLEYKGLQNERGALKHNAAKIDKLTT ESHSIKNVLNGQNSVKLGAEGVDSLKSLNMKKTGTDATKNLNDATLKSNAGTSATESL GIKDSNKQISPEHQAILSKRLESVESDIRLEQNTMDMTRIDARKMQMTGDLIMKNSVT VGGIAGASGQYAATQERSEQQISQVNNRVASTASDEARESSRKSTSLIQEMLKTMESI NQSKASALAAIAGNIRA" regulatory complement(3029093..3029098) /regulatory_class="ribosome_binding_site" /gene="sipC" /locus_tag="STM2884" /note="putative RBS for sipC; RegulonDB:STMS1H002946" gene complement(3029121..3030909) /gene="sipB" /locus_tag="STM2885" /db_xref="GeneID:1254408" CDS complement(3029121..3030902) /gene="sipB" /locus_tag="STM2885" /note="SipB (gi|975295)" /codon_start=1 /transl_table=11 /product="pathogenicity island 1 effector protein SipB" /protein_id="NP_461806.1" /db_xref="GI:16766191" /db_xref="GeneID:1254408" /translation="MVNDASSISRSGYTQNPRLAEAAFEGVRKNTDFLKAADKAFKDV VATKAGDLKAGTKSGESAINTVGLKPPTDAAREKLSSEGQLTLLLGKLMTLLGDVSLS QLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAA TKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDATVKAGTDAKA KAEKADNILTKFQGTANAASQNQVSQGEQDNLSNVARLTMLMAMFIEIVGKNTEESLQ NDLALFNALQEGRQAEMEKKSAEFQEETRKAEETNRIMGCIGKVLGALLTIVSVVAAV FTGGASLALAAVGLAVMVADEIVKAATGVSFIQQALNPIMEHVLKPLMELIGKAITKA LEGLGVDKKTAEMAGSIVGAIVAAIAMVAVIVVVAVVGKGAAAKLGNALSKMMGETIK KLVPNVLKQLAQNGSKLFTQGMQRITSGLGNVGSKMGLQTNALSKELVGNTLNKVALG MEVTNTAAQSAGGVAEGVFIKNASEALADFMLARFAMDQIQQWLKQSVEIFGENQKVT AELQKAMSSAVQQNADASRFILRQSRA" regulatory complement(3030904..3030909) /regulatory_class="ribosome_binding_site" /gene="sipB" /locus_tag="STM2885" /note="putative RBS for sipB; RegulonDB:STMS1H002947" gene complement(3030905..3031414) /gene="sicA" /locus_tag="STM2886" /db_xref="GeneID:1254409" CDS complement(3030905..3031402) /gene="sicA" /locus_tag="STM2886" /note="secretory proteins; surface presentation of antigens protein SPAT. (SW:SPAT_SALTY)" /codon_start=1 /transl_table=11 /product="CesD/SycD/LcrH family type III secretion system chaperone" /protein_id="NP_461807.1" /db_xref="GI:16766192" /db_xref="GeneID:1254409" /translation="MDYQNNVSEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHA YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK NDYRPVFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYLEALKTAETEQHS EQEKE" regulatory complement(3031409..3031414) /regulatory_class="ribosome_binding_site" /gene="sicA" /locus_tag="STM2886" /note="putative RBS for sicA; RegulonDB:STMS1H002948" gene complement(3031540..3032617) /gene="spaS" /locus_tag="STM2887" /db_xref="GeneID:1254410" CDS complement(3031540..3032610) /gene="spaS" /locus_tag="STM2887" /note="secretory proteins; surface presentation of antigens protein SPAS. (SW:SPAS_SALTY)" /codon_start=1 /transl_table=11 /product="EscU/YscU/HrcU family type III secretion system export apparatus switch protein" /protein_id="NP_461808.1" /db_xref="GI:16766193" /db_xref="GeneID:1254410" /translation="MSSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVS YGSFNEFMGIIKIIIADNFDQSMADYSLAVFGIGLKYLIPFMLLCLVCSALPALLQAG FVLATEALKPNLSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEI FSQLNGNIVGIAVIWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKR EMKEQEGNPEVKSKRREVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIP MISVYETNQRALAVRAYAEKVGVPVIVDIKLARSLFKTHRRYDLVSLEEIDEVLRLLV WLEEVENAGKDVIQPQENEVRH" gene complement(3032597..3033394) /gene="spaR" /locus_tag="STM2888" /db_xref="GeneID:1254411" CDS complement(3032597..3033388) /gene="spaR" /locus_tag="STM2888" /note="secretory proteins; surface presentation of antigens protein SPAR. (SW:SPAR_SALTY)" /codon_start=1 /transl_table=11 /product="EscT/YscT/HrcT family type III secretion system export apparatus protein" /protein_id="NP_461809.1" /db_xref="GI:16766194" /db_xref="GeneID:1254411" /translation="MFYALYFEIHHLVASAALGFARVAPIFFFLPFLNSGVLSGAPRN AIIILVALGVWPHALNEAPPFLSVAMIPLVLQEAAVGVMLGCLLSWPFWVMHALGCII DNQRGATLSSSIDPANGIDTSEMANFLNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPM NECTPSLPPLLTFINQVAQNALVLASPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTV KSGIAVLIMLLYFSPVLPDNVLRLSFQATGLSSWFYERGATHVLE" regulatory complement(3032612..3032617) /regulatory_class="ribosome_binding_site" /gene="spaR" /locus_tag="STM2888" /note="putative RBS for spaS; RegulonDB:STMS1H002949" regulatory complement(3033389..3033394) /regulatory_class="ribosome_binding_site" /gene="spaR" /locus_tag="STM2888" /note="putative RBS for spaR; RegulonDB:STMS1H002950" gene complement(3033392..3033656) /gene="spaQ" /locus_tag="STM2889" /db_xref="GeneID:1254412" CDS complement(3033392..3033652) /gene="spaQ" /locus_tag="STM2889" /note="secretory proteins; surface presentation of antigens protein SPAQ. (SW:SPAQ_SALTY)" /codon_start=1 /transl_table=11 /product="EscS/YscS/HrcS family type III secretion system export apparatus protein" /protein_id="NP_461810.1" /db_xref="GI:16766195" /db_xref="GeneID:1254412" /translation="MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQE QTLPFGIKLLGVCLCLFLLSGWYGEVLLSYGRQVIFLALAKG" regulatory complement(3033651..3033656) /regulatory_class="ribosome_binding_site" /gene="spaQ" /locus_tag="STM2889" /note="putative RBS for spaQ; RegulonDB:STMS1H002951" gene complement(3033678..3034357) /gene="spaP" /locus_tag="STM2890" /db_xref="GeneID:1254413" CDS complement(3033678..3034352) /gene="spaP" /locus_tag="STM2890" /note="secretory proteins; surface presentation of antigens protein SPAP. (SW:SPAP_SALTY)" /codon_start=1 /transl_table=11 /product="EscR/YscR/HrcR family type III secretion system export apparatus protein" /protein_id="NP_461811.1" /db_xref="GI:16766196" /db_xref="GeneID:1254413" /translation="MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQ QIPSNMTLNGVALLLSMFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDY LIKYSDRELVQFFENAQLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFK IGFYLYLPFVVVDLVVSSVLLALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQ YMDIAT" gene complement(3034342..3035261) /gene="spaO" /locus_tag="STM2891" /db_xref="GeneID:1254414" CDS complement(3034342..3035253) /gene="spaO" /locus_tag="STM2891" /note="secretory proteins; surface presentation of antigens protein SPAO. (SW:SPAO_SALTY)" /codon_start=1 /transl_table=11 /product="type III secretion system protein SpaO" /protein_id="NP_461812.1" /db_xref="GI:16766197" /db_xref="GeneID:1254414" /translation="MSLRVRQIDRREWLLAQTATECQRHGREATLEYPTRQGMWVRLS DAEKRWSAWIKPGDWLEHVSPALAGAAVSAGAEHLVVPWLAATERPFELPVPHLSCRR LCVENPVPGSALPEGKLLHIMSDRGGLWFEHLPELPAVGGGRPKMLRWPLRFVIGSSD TQRSLLGRIGIGDVLLIRTSRAEVYCYAKKLGHFNRVEGGIIVETLDIQHIEEENNTT ETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLL GNGELVQMNDTLGVEIHEWLSESGNGE" regulatory complement(3034352..3034357) /regulatory_class="ribosome_binding_site" /gene="spaP" /locus_tag="STM2890" /note="putative RBS for spaP; RegulonDB:STMS1H002952" gene complement(3035253..3036271) /gene="invJ" /locus_tag="STM2892" /db_xref="GeneID:1254415" CDS complement(3035253..3036263) /gene="invJ" /locus_tag="STM2892" /note="secretory proteins; surface presentation of antigens protein SPAN. (SW:SPAN_SALTY)" /codon_start=1 /transl_table=11 /product="antigen presentation protein SpaN" /protein_id="NP_461813.1" /db_xref="GI:16766198" /db_xref="GeneID:1254415" /translation="MGDVSAVSSSGNILLPQQDEVGGLSEALKKAVEKHKTEYSGDKK DRDYGDAFVMHKETALPLLLAAWRHGAPAKSEHHNGNVSGLHHNGKSELRIAEKLLKV TAEKSVGLISAEAKVDKSAALLSSKNRPLESVSGKKLSADLKAVESVSEVTDNATGIS DDNIKALPGDNKAIAGEGVRKEGAPLARDVAPARMAAANTGKPEDKDHKKVKDVSQLP LQPTTIADLSQLTGGDEKMPLAAQSKPMMTIFPTADGVKGEDSSLTYRFQRWGNDYSV NIQARQAGEFSLIPSNTQVEHRLHDQWQNGNPQRWHLTRDDQQNPQQQQHRQQSGEED DA" regulatory complement(3035256..3035261) /regulatory_class="ribosome_binding_site" /gene="spaO" /locus_tag="STM2891" /note="putative RBS for spaO; RegulonDB:STMS1H002953" gene complement(3036263..3036711) /gene="invI" /locus_tag="STM2893" /db_xref="GeneID:1254416" CDS complement(3036263..3036706) /gene="invI" /locus_tag="STM2893" /note="secretory proteins; surface presentation of antigens protein SPAM. (SW:SPAM_SALTY)" /codon_start=1 /transl_table=11 /product="type III secretion system protein SpaM" /protein_id="NP_461814.1" /db_xref="GI:16766199" /db_xref="GeneID:1254416" /translation="MHSLTRIKVLQRRCTVFHSQCESILLRYQDEDRGLQAEEEAILE QIAGLKLLLDTLRAENRQLSREEIYTLLRKQSIVRRQIKDLELQIIQIQEKRSELEKK REEFQKKSKYWLRKEGNYQRWIIRQKRFYIQREIQQEEAESEEII" regulatory complement(3036266..3036271) /regulatory_class="ribosome_binding_site" /gene="invI" /locus_tag="STM2893" /note="putative RBS for invJ; RegulonDB:STMS1H002954" gene complement(3036684..3037979) /gene="invC" /locus_tag="STM2894" /db_xref="GeneID:1254417" CDS complement(3036684..3037979) /gene="invC" /locus_tag="STM2894" /EC_number="3.6.3.14" /note="secretory proteins; probable ATP synthase SPAL. (SW:SPAL_SALTY)" /codon_start=1 /transl_table=11 /product="EscN/YscN/HrcN family type III secretion system ATPase" /protein_id="NP_461815.1" /db_xref="GI:16766200" /db_xref="GeneID:1254417" /translation="MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQ VVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKI VERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFAS AGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDF PSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPA SVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAG QGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENID NDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN" regulatory complement(3036706..3036711) /regulatory_class="ribosome_binding_site" /gene="invI" /locus_tag="STM2893" /note="putative RBS for invI; RegulonDB:STMS1H002955" gene complement(3037976..3038390) /gene="invB" /locus_tag="STM2895" /db_xref="GeneID:1254418" CDS complement(3037976..3038383) /gene="invB" /locus_tag="STM2895" /note="secretory proteins; surface presentation of antigens protein SPAK. (SW:SPAK_SALTY)" /codon_start=1 /transl_table=11 /product="type III secretion system chaperone SpaK" /protein_id="NP_461816.1" /db_xref="GI:16766201" /db_xref="GeneID:1254418" /translation="MQHLDIAELVRSALEVSGCDPSLIGGIDSHSTIVLDLFALPSIC ISVKDDDVWIWAQLGADSMVVLQQRAYEILMTIMEGCHFARGGQLLLGEQNGELTLKA LVHPDFLSDGEKFSTALNGFYNYLEVFSRSLMR" regulatory complement(3038385..3038390) /regulatory_class="ribosome_binding_site" /gene="invB" /locus_tag="STM2895" /note="putative RBS for invB; RegulonDB:STMS1H002956" gene complement(3038407..3040471) /gene="invA" /locus_tag="STM2896" /db_xref="GeneID:1254419" CDS complement(3038407..3040464) /gene="invA" /locus_tag="STM2896" /note="invasion protein INVA. (SW:INVA_SALTY)" /codon_start=1 /transl_table=11 /product="EscV/YscV/HrcV family type III secretion system export apparatus protein" /protein_id="NP_461817.1" /db_xref="GI:16766202" /db_xref="GeneID:1254419" /translation="MLLSLLNSARLRPELLILVLMVMIISMFVIPLPTYLVDFLIALN IVLAILVFMGSFYIDRILSFSTFPAVLLITTLFRLALSISTSRLILIEADAGEIIATF GQFVIGDSLAVGFVVFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLK AGIIDADAARERRSVLERESQLYGSFDGAMKFIKGDAIAGIIIIFVNFIGGISVGMTR HGMDLSSALSTYTMLTIGDGLVAQIPALLIAISAGFIVTRVNGDSDNMGRNIMTQLLN NPFVLVVTAILTISMGTLPGFPLPVFVILSVVLSVLFYFKFREAKRSAAKPKTSKGEQ PLSIEEKEGSSLGLIGDLDKVSTETVPLILLVPKSRREDLEKAQLAERLRSQFFIDYG VRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSDEVVSFGINPTIHQ QGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFGIQETKHMLDQ LEAKFPDLLKEVLRHATVQRISEVLQRLLSERVSVRNMKLIMEALALWAPREKDVINL VEHIRGAMARYICHKFANGGELRAVMVSAEVEDVIRKGIRQTSGSTFLSLDPEASANL MDLITLKLDDLLIAHKDLVLLTSVDVRRFIKKMIEGRFPDLEVLSFGEIADSKSVNVI KTI" regulatory complement(3040466..3040471) /regulatory_class="ribosome_binding_site" /gene="invA" /locus_tag="STM2896" /note="putative RBS for invA; RegulonDB:STMS1H002957" gene complement(3040489..3041615) /gene="invE" /locus_tag="STM2897" /db_xref="GeneID:1254420" CDS complement(3040489..3041607) /gene="invE" /locus_tag="STM2897" /note="invasion protein ONVE. (SW:INVE_SALTY)" /codon_start=1 /transl_table=11 /product="SepL/TyeA/HrpJ family type III secretion system gatekeeper" /protein_id="NP_461818.1" /db_xref="GI:16766203" /db_xref="GeneID:1254420" /translation="MIPGSTSGISFSRILSRQTSHQDATQHTDAQQAEIQQAAEDSSP GAEVQKFVQSTDEMSAALAQFRNRRDYEKKSSNLSNSFERVLEDEALPKAKQILKLIS VHGGALEDFLRQARSLFPDPSDLVLVLRELLRRKDLEEIVRKKLESLLKHVEEQTDPK TLKAGINCALKARLFGKTLSLKPGLLRASYRQFIQSESHEVEIYSDWIASYGYQRRLV VLDFIEGSLLTDIDANDASCSRLEFGQLLRRLTQLKMLRSADLLFVSTLLSYSFTKAF NAEESSWLLLMLSLLQQPHEVDSLLADIIGLNALLLSHKEHASFLQIFYQVCKAIPSS LFYEEYWQEELLMALRSMTDIAYKHEMAEQRRTIEKLS" gene complement(3041604..3043292) /gene="invG" /locus_tag="STM2898" /db_xref="GeneID:1254421" CDS complement(3041604..3043292) /gene="invG" /locus_tag="STM2898" /note="INVG protein precursor. (SW:INVG_SALTY)" /codon_start=1 /transl_table=11 /product="EscC/YscC/HrcC family type III secretion system outer membrane ring protein" /protein_id="NP_461819.1" /db_xref="GI:16766204" /db_xref="GeneID:1254421" /translation="MKTHILLARVLACAALVLVTPGYSSEKIPVTGSGFVAKDDSLRT FFDAMALQLKEPVIVSKMAARKKITGNFEFHDPNALLEKLSLQLGLIWYFDGQAIYIY DASEMRNAVVSLRNVSLNEFNNFLKRSGLYNKNYPLRGDNRKGTFYVSGPPVYVDMVV NAATMMDKQNDGIELGRQKIGVMRLNNTFVGDRTYNLRDQKMVIPGIATAIERLLQGE EQPLGNIVSSEPPAMPAFSANGEKGKAANYAGGMSLQEALKQNAAAGNIKIVAYPDTN SLLVKGTAEQVHFIEMLVKALDVAKRHVELSLWIVDLNKSDLERLGTSWSGSITIGDK LGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK LIGERNVALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNVV RVFMIEPKEIVDPLTPDASESVNNILKQSGAWSGDDKLQKWVRVYLDRGQEAIK" regulatory complement(3041610..3041615) /regulatory_class="ribosome_binding_site" /gene="invE" /locus_tag="STM2897" /note="putative RBS for invE; RegulonDB:STMS1H002958" gene complement(3043289..3043939) /gene="invF" /locus_tag="STM2899" /db_xref="GeneID:1254422" CDS complement(3043289..3043939) /gene="invF" /locus_tag="STM2899" /note="invasion protein INVF. (SW:INVF_SALTY)" /codon_start=1 /transl_table=11 /product="invasion protein" /protein_id="NP_461820.1" /db_xref="GI:16766205" /db_xref="GeneID:1254422" /translation="MSFSESRHNENCLIQEGALLFCEQAVVAPVSGDLVFRPLKIEVL SKLLAFIDGAGLVDTTYAESDKWVLLSPEFRAIWQDRKRCEYWFLQQIITPSPAFNKV LALLRKSESYWLVGYLLAQSTSGNTMRMLGEDYGVSYTHFRRLCSRALGGKAKSELRN WRMAQSLLNSVEGHENITQLAVNHGYSSPSHFSSEIKELIGVSPRKLSNIIQLADK" gene 3044391..3044839 /gene="invH" /locus_tag="STM2900" /db_xref="GeneID:1254423" regulatory 3044391..3044396 /regulatory_class="ribosome_binding_site" /gene="invH" /locus_tag="STM2900" /note="putative RBS for invH; RegulonDB:STMS1H002959" CDS 3044396..3044839 /gene="invH" /locus_tag="STM2900" /note="invasion protein INVH precursor. (SW:INVH_SALTY)" /codon_start=1 /transl_table=11 /product="invasion lipoprotein InvH" /protein_id="NP_461821.1" /db_xref="GI:16766206" /db_xref="GeneID:1254423" /translation="MKKFYSCLPVFLLIGCAQVPLPSSVSKPVQQPGAQKEQLANANS IDECQSLPYVPSDLAKNKSLSNHNADNSASKNSAISSSIFCEKYKQTKEQALTFFQEH PQYMRSKEDEEQLMTEFKKVLLEPGSKNLSIYQTLLAAHERLQAL" gene 3045264..3045719 /locus_tag="STM2901" /db_xref="GeneID:1254424" regulatory 3045264..3045269 /regulatory_class="ribosome_binding_site" /locus_tag="STM2901" /note="putative RBS for STM2901; RegulonDB:STMS1H002960" CDS 3045270..3045719 /locus_tag="STM2901" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461822.1" /db_xref="GI:16766207" /db_xref="GeneID:1254424" /translation="MDTTEELNGTYFYHGQSNLSAGELFDVIFIEQFCDELGIGIESG AAILAGQPWLKTRTKPGEAIKGTSVISRYGRMLLRNARTPFGIRVPTPVGIRMRKTNN LAAVIARYVPWLGWVGLVNSIYQVSRRTQAKYNLIARPKDRIQWTSF" gene 3045704..3046051 /locus_tag="STM2902" /db_xref="GeneID:1254425" CDS 3045704..3046051 /locus_tag="STM2902" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461823.1" /db_xref="GI:16766208" /db_xref="GeneID:1254425" /translation="MDILLMDTIQQEVLALFREEIPGYLDSNWKEIPLELDSDLFEAP GDDLHEALDKFEKKFNVDLSQVKWSCYFPWENTPLLTRWFKLKREDVERTRKPLTIRM FSESAKAGKWLYD" gene complement(3046324..3046656) /locus_tag="STM2903" /db_xref="GeneID:1254426" CDS complement(3046324..3046650) /locus_tag="STM2903" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461824.1" /db_xref="GI:16766209" /db_xref="GeneID:1254426" /translation="MEEVNSEFTIVVESDLDKYELIDFLSQGIPDIIKVNLLYLRYEN TMITIERNYDCNPKLINENDGWLYYKYELTVFSMENTSYEYQYELANKIMNALREAGY LAESIW" regulatory complement(3046651..3046656) /regulatory_class="ribosome_binding_site" /locus_tag="STM2903" /note="putative RBS for STM2903; RegulonDB:STMS1H002961" gene 3047331..3047629 /locus_tag="STM2904" /db_xref="GeneID:1254427" regulatory 3047331..3047336 /regulatory_class="ribosome_binding_site" /locus_tag="STM2904" /note="putative RBS for STM2904; RegulonDB:STMS1H002962" CDS 3047339..3047629 /locus_tag="STM2904" /codon_start=1 /transl_table=11 /product="putative ABC-type transport system" /protein_id="NP_461825.1" /db_xref="GI:16766210" /db_xref="GeneID:1254427" /translation="MKTMPQIAIESNERLSLRVSTDAKKLIVRAAAIQQTNLTDFVVS NILPVAQKIVDAAERVYLTERDTKMIMEILDNPPAPNEKLLAAAFALPDMKK" gene 3047621..3048153 /locus_tag="STM2905" /db_xref="GeneID:1254428" regulatory 3047621..3047626 /regulatory_class="ribosome_binding_site" /locus_tag="STM2904" /note="putative RBS for STM2905; RegulonDB:STMS1H002963" CDS 3047626..3048153 /locus_tag="STM2905" /codon_start=1 /transl_table=11 /product="GNAT family N-acetyltransferase" /protein_id="NP_461826.1" /db_xref="GI:16766211" /db_xref="GeneID:1254428" /translation="MMFTDWHEAAIGKTHNRMNFDCGDADLNQFLQRHARQNHEKGTT KTYVALDNSDVTRIHGFYSVSPASLIYAQVPGAISKGLGRYDVPVFRLGRLAVDKSMQ GQGLGAQLLLSAGKRCIQAALQVGGVALLIDAKNKQVCDWYKGFGAVPLNDQPLSLLL SFKTLYAALSASGRL" gene complement(3048226..3048418) /locus_tag="STM2906" /db_xref="GeneID:1254429" CDS complement(3048226..3048414) /locus_tag="STM2906" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_449286.1" /db_xref="GI:1109557723" /db_xref="GeneID:1254429" /translation="MEKKVGYHRRSVVETAMFRIKTLLGGHLSLRNYDAQVGEAMAMV KALNRMTLLAMPTSVRLV" regulatory complement(3048413..3048418) /regulatory_class="ribosome_binding_site" /locus_tag="STM2906" /note="putative RBS for STM2906; RegulonDB:STMS1H002964" gene 3048768..3049434 /gene="pphB" /locus_tag="STM2907" /db_xref="GeneID:1254430" regulatory 3048768..3048773 /regulatory_class="ribosome_binding_site" /gene="pphB" /locus_tag="STM2907" /note="putative RBS for pphB; RegulonDB:STMS1H002965" CDS 3048778..3049434 /gene="pphB" /locus_tag="STM2907" /EC_number="3.1.3.16" /note="similar to E. coli protein phosphatase 2 (AAC75776.1); Blastp hit to AAC75776.1 (218 aa), 60% identity in aa 1 - 218" /codon_start=1 /transl_table=11 /product="serine/threonine protein phosphatase" /protein_id="NP_461828.1" /db_xref="GI:16766213" /db_xref="GeneID:1254430" /translation="MELIRYADINSDLYRHIWVVGDIHGCYSLLLTRLAQLNFSPDTD LLISTGDNIDRGKENLETLRLLNTPWFISVVGNHEAMALDAFETQDGNFWYVNGGYWY DSVTEKDRQEATELLLTFKQRPHIIEVETSSKKYVIAHADYPDDSYDYGKQVDIDSVL WSRDRLLGSLQGNIHPIRGADTFIFGHMIVDYTTTFANQIYIDTGSFCSGNLSFFKIK " gene complement(3049606..3050134) /locus_tag="STM2908" /db_xref="GeneID:1254431" CDS complement(3049606..3050127) /locus_tag="STM2908" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461829.1" /db_xref="GI:16766214" /db_xref="GeneID:1254431" /translation="MKTTLSQPFIINKLSINVKPALSRSGKIVFEANPAQKLYTVFDD HREAPAGFGVKASLTKKTYVIQRRVASSDRNVSEGRKPSSVLKVKVGNVFDFPNIDET RQAARQLVQTMLATKRNFNKIKRETDASELETVIKIVLHEGKPIHFATTVIAFSSDRY LELCDLYSSQAIE" regulatory complement(3050129..3050134) /regulatory_class="ribosome_binding_site" /locus_tag="STM2908" /note="putative RBS for STM2908; RegulonDB:STMS1H002966" gene 3050270..3052853 /gene="mutS" /locus_tag="STM2909" /db_xref="GeneID:1254432" regulatory 3050270..3050275 /regulatory_class="ribosome_binding_site" /gene="mutS" /locus_tag="STM2909" /note="putative RBS for mutS; RegulonDB:STMS1H002967" CDS 3050286..3052853 /gene="mutS" /locus_tag="STM2909" /note="recognizes exocyclic adducts of guanosine; DNA mismatch repair protein MUTS. (SW:MUTS_SALTY)" /codon_start=1 /transl_table=11 /product="DNA mismatch repair protein MutS" /protein_id="NP_461830.1" /db_xref="GI:16766215" /db_xref="GeneID:1254432" /translation="MNESFDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYD DAKRASQLLDISLTKRGASAGEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPA TSKGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLS EPADRETMAAELQRTNPAELLYAEDFAEMALIEGRRGLRRRPLWEFEIDTARQQLNLQ FGTRDLVGFGVENASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATR RNLEITQNLAGGVENTLAAVLDCTVTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQ DTVSELQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELHAQLETVDSAPV QALRKKMGDFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLD RLEIRERERTGLDTLKVGYNAVHGYYIQISRGQSHLAPINYVRRQTLKNAERYIIPEL KEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWT LNYTCPTFTDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKST YMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANI LHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEK MEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLREL ESISPNAAATQVDGTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRLKSLV" gene complement(3052909..3053296) /locus_tag="STM2910" /db_xref="GeneID:1254433" CDS complement(3052909..3053289) /locus_tag="STM2910" /codon_start=1 /transl_table=11 /product="DUF4440 domain-containing protein" /protein_id="NP_461831.1" /db_xref="GI:16766216" /db_xref="GeneID:1254433" /translation="MNPYKEEIIHAHAAIENWLSKGVGSLEALIARFAADFTMITPGG VCLDYPALGAFFQAQRACRPGLVIVVEHIDLVAEWPEGAALRYRERQQLPGQAETVRW STVILKRERGRIVWRHLHETTVTA" gene complement(3053286..3054501) /locus_tag="STM2911" /db_xref="GeneID:1254434" CDS complement(3053286..3054494) /locus_tag="STM2911" /note="similar to E. coli multidrug resistance; probably membrane translocase (AAC75733.1); Blastp hit to AAC75733.1 (512 aa), 29% identity in aa 15 - 201, 30% identity in aa 284 - 319" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_461832.1" /db_xref="GI:16766217" /db_xref="GeneID:1254434" /translation="MTYRSKVAVVYLLGFFLDLINLFIASVAFPAMSVDLHTSISALA WVSNGYIAGLTLIVPFSAFLSRYLGARRLIIFSLILFSVAAAAAGFADSLHSLVFWRI VQGAGGGLLIPVGQALTWQQFKPHERAGVSSVVMMVALLAPACSPAIGGLLVETCGWR WIFFATLPVAVLTLLLAYRWLNVASTTMASARLLHLPLLTDRLLRFAMIVYLCVPGMF IGISVVGMFYLQNVAQLSPAAAGSLMIPWSIASFVAIMLTGRYFNRLGPRPLIIVGCL LQAAGILLLTNVTPATSHRVLMMIFALMGAGGSLCSSTAQSGAFLTIARRDMPDASAL WNLNRQISFFLGATLLTLLLNALQRVMSLEVAYRWTFIAAAGITLLPLIYAVCLNNRQ ALLCLKKERS" regulatory complement(3053291..3053296) /regulatory_class="ribosome_binding_site" /locus_tag="STM2910" /note="putative RBS for STM2910; RegulonDB:STMS1H002968" regulatory complement(3054496..3054501) /regulatory_class="ribosome_binding_site" /locus_tag="STM2911" /note="putative RBS for STM2911; RegulonDB:STMS1H002969" gene 3054582..3055514 /locus_tag="STM2912" /db_xref="GeneID:1254435" CDS 3054582..3055514 /locus_tag="STM2912" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC73313.1); Blastp hit to AAC73313.1 (304 aa), 32% identity in aa 6 - 289" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_461833.1" /db_xref="GI:16766218" /db_xref="GeneID:1254435" /translation="MTVKELAMLNLQRMSLFIAVVDSGSFTAAAAASGQTKAVVSFNI RQLEKELGVTLLLRSTRRLTLTDAGVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELR ITTTPEFGEQVIIPLLAQFSQRHPDLRIRHMSSSHHADLIAERFDVAIRLGSLADSRY RAALISRFTILPVAAPQWLARNPVSSLESLAQAEWIIHERLPTPLRWTVTSNHGQHSR LEISKAGKISVDSARSLMAFALAGSGVALLPQWLVNTALEDGTLIHVLPDYHFPRQGI YAVYPDARHVSTKVRAFIDFLRSQWDCGEHAPSS" gene complement(3055556..3057059) /locus_tag="STM2913" /db_xref="GeneID:1254436" CDS complement(3055556..3057052) /locus_tag="STM2913" /note="similar to E. coli putative transport protein (AAC75782.1); Blastp hit to AAC75782.1 (454 aa), 33% identity in aa 11 - 446" /codon_start=1 /transl_table=11 /product="gluconate permease" /protein_id="NP_461834.1" /db_xref="GI:16766219" /db_xref="GeneID:1254436" /translation="MTSLPTPIIGLIVAVFVLVWLVLRTRVHALIAMLAAACIAGLLG GMGIDKTLSVITSGFGTTLGSIGLVIGLGVMMGRLLEVSGAAERIAWSFIKWLGKRRE EWALAITGYIVSIPIFVDSAFVILYPVAKALAKSGKRSLLTLGVALAGGLVVTHHTVP PTPGPLGVAGIFNVDIGAMLLTGMALAVPCVIGIVFYAQWLDKRYPDFVPRTLNADEV NAALEQYNKEKEQKELPSLTLSLLPIVVPIVLIFLKAICSTLATVEGWSGLATHPVVQ AINFVGSPVIALAISVLLAVYTLVPRMDKHTTAERLEEGLQSAGIILLVTGAGGALGA ILRDSGAGQQLAEQVANLPISPILIPFIVATLVRLIQGSGTVAMITAASISAPILAQI PGINMLLAAQAATMGSLFFGYFNDSLFWVVNRMMGVSDVKQQMVVWSVPTTIAWAIGG TGVVLINLLFGSGGSWLDPLLPIVVLAAIMLWVRWQAQGIKDKLVVKD" gene complement(3057049..3058006) /locus_tag="STM2914" /db_xref="GeneID:1254437" CDS complement(3057049..3057999) /locus_tag="STM2914" /note="similar to E. coli UDP-galactose-4-epimerase (AAC73846.1); Blastp hit to AAC73846.1 (338 aa), 25% identity in aa 1 - 162" /codon_start=1 /transl_table=11 /product="putative nucleoside-diphosphate-sugar epimerase" /protein_id="NP_461835.1" /db_xref="GI:16766220" /db_xref="GeneID:1254437" /translation="MQIIITGGGGFLGQKLASALLNSSLAFNELLLVDLKMPARLSDS PRLRCLEADLTQPGVLESVITANTSVVYHLAAIVSSHAEDDFDLGWKVNLDLTRQLLE ACRRQPQKIRFVFSSSLAVYGGTLPECVTDTTALTPRSSYGAQKAACELLVNDYTRKG YVDGLALRLPTICVRPGKPNRAASSFVSAIIREPLQGETTVCPVSESLRLWISSPATV IHNLSLAATLPAPGEASSINLPGISVTVGEMLETLCQAGGQAARDRVTHQRDEGVEKI VASWPGRIDNQRALALGFVADKRFDDIIERFRQDDMEGRS" regulatory complement(3057054..3057059) /regulatory_class="ribosome_binding_site" /locus_tag="STM2914" /note="putative RBS for STM2913; RegulonDB:STMS1H002970" regulatory complement(3058001..3058006) /regulatory_class="ribosome_binding_site" /locus_tag="STM2914" /note="putative RBS for STM2914; RegulonDB:STMS1H002971" gene complement(3058039..3058829) /gene="ygbM" /locus_tag="STM2915" /db_xref="GeneID:1254438" CDS complement(3058039..3058815) /gene="ygbM" /locus_tag="STM2915" /note="similar to E. coli orf, hypothetical protein (AAC75781.1); Blastp hit to AAC75781.1 (258 aa), 79% identity in aa 1 - 258" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461836.1" /db_xref="GI:16766221" /db_xref="GeneID:1254438" /translation="MPRFAANLSMMFTEAPFIERFAAAAEAGFQAVEFLFPYDFAASE IKAQLSRHNLTLALFNTSAGDTAAGEWGRAALPGREHDARADIDLALEYALALECEQV HIMAGVVPDGADGARYRATFIDNLRYAADRFAAHDKRILIEALSPGVKPGYLFSSQYQ ALGIAEEVDRPNVFIQLDTFHAQKVDGNLSHLIREYAGRYAHVQIASLPDRHEPDDGE INYPWLFRLFDDVGYRGWIGCEYQPRNTTQDGLGWFNAWR" gene complement(3058820..3059473) /gene="ygbL" /locus_tag="STM2916" /db_xref="GeneID:1254439" CDS complement(3058820..3059458) /gene="ygbL" /locus_tag="STM2916" /note="similar to E. coli putative epimerase/aldolase (AAC75780.1); Blastp hit to AAC75780.1 (212 aa), 85% identity in aa 1 - 211" /codon_start=1 /transl_table=11 /product="aldolase" /protein_id="NP_461837.1" /db_xref="GI:16766222" /db_xref="GeneID:1254439" /translation="MTILAKEEHALREEMVRIAASFFQRGYATGSAGNLSLLLPDGNI LATPTGSCLGNLDPQRLSKVDPQGEWLSGDKPSKEVRFHLALYRNNPCCKAVVHLHST WSTALSCLEGLDPQNVIRPFTPYVVMRMGDIPLVPYYRPGDDRIARDLAALAARHQAF LLANHGPVVCGENLQEAANNTEELEETAKLIFILGERPIRYLTTEEIAQLRR" regulatory complement(3058824..3058829) /regulatory_class="ribosome_binding_site" /gene="ygbL" /locus_tag="STM2916" /note="putative RBS for ygbM; RegulonDB:STMS1H002972" gene complement(3059455..3060728) /gene="ygbK" /locus_tag="STM2917" /db_xref="GeneID:1254440" CDS complement(3059455..3060717) /gene="ygbK" /locus_tag="STM2917" /note="similar to E. coli orf, hypothetical protein (AAC75779.1); Blastp hit to AAC75779.1 (388 aa), 79% identity in aa 1 - 384" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461838.1" /db_xref="GI:16766223" /db_xref="GeneID:1254440" /translation="MLKIGVIADDFTGATDIASFLVENGMPTVQINDVPTGTQPEGCD AVVISLKTRSCPAQEAIKQSLAALVWLKKQGCQQVYFKYCSTFDSTAEGNIGPVTDAL MVALDTSFTVISPALPVNGRTVYQGYLFVMNHLLAESGMRHHPINPMTDSYLPRLMEA QAQGRCGVIPAQTLDEGVAATRAALSRLQQEGYRYAVLDALNERHLEIQGEVLRDAPL VTGGSGLAMGLARQWAKHGVSQARSAGYPLSGRAVVLSGSCSQMTNQQVAFYRQHAPT RDVDVARCLSSETREAYAEALAQWVLSQDSELAPMISATASTQALAAIQQQYGATEAS HAVEALFSLLAARLAEGGITRFIVAGGETSGVVTQSLGITGFHIGPCISPGVPWVNAL HAPVSLALKSGNFGDESFFIRAQREFQV" regulatory complement(3059468..3059473) /regulatory_class="ribosome_binding_site" /gene="ygbL" /locus_tag="STM2916" /note="putative RBS for ygbL; RegulonDB:STMS1H002973" gene complement(3060711..3061645) /gene="ygbJ" /locus_tag="STM2918" /db_xref="GeneID:1254441" CDS complement(3060711..3061634) /gene="ygbJ" /locus_tag="STM2918" /note="similar to E. coli putative dehydrogenase (AAC75778.1); Blastp hit to AAC75778.1 (302 aa), 82% identity in aa 1 - 299" /codon_start=1 /transl_table=11 /product="3-hydroxyisobutyrate dehydrogenase" /protein_id="NP_461839.1" /db_xref="GI:16766224" /db_xref="GeneID:1254441" /translation="MTTGTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACAN LLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSST ISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAV ASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAG NSWMFENRMQHVVDGDYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNMFTSAS NAGYGKEDDSAVIKIFSGITLPGVTPEEPSC" regulatory complement(3060723..3060728) /regulatory_class="ribosome_binding_site" /gene="ygbJ" /locus_tag="STM2918" /note="putative RBS for ygbK; RegulonDB:STMS1H002974" regulatory complement(3061640..3061645) /regulatory_class="ribosome_binding_site" /gene="ygbJ" /locus_tag="STM2918" /note="putative RBS for ygbJ; RegulonDB:STMS1H002975" gene 3061819..3062595 /gene="ygbI" /locus_tag="STM2919" /db_xref="GeneID:1254442" regulatory 3061819..3061824 /regulatory_class="ribosome_binding_site" /gene="ygbI" /locus_tag="STM2919" /note="putative RBS for ygbI; RegulonDB:STMS1H002976" CDS 3061831..3062595 /gene="ygbI" /locus_tag="STM2919" /note="similar to E. coli putative DEOR-type transcriptional regulator (AAC75777.1); Blastp hit to AAC75777.1 (265 aa), 86% identity in aa 11 - 263" /codon_start=1 /transl_table=11 /product="DeoR family transcriptional regulator" /protein_id="NP_461840.1" /db_xref="GI:16766225" /db_xref="GeneID:1254442" /translation="MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLE QQGAVIQVSGGVQSSTRVAHEPSHQIKTELATPQKAAIGKLAASLVQPESCIYLDAGT TTLAIARQLVTMNKLTVVTNDFVIADYLMDNSNCTIIHTGGAVCRENRSCVGEAAATL LRGLMIDQAFISASSWSVRGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWL ALPLAEFNQIVTDDGLPESAIRALAKVDISLLMAKQ" gene complement(3062614..3063025) /locus_tag="STM2920" /db_xref="GeneID:1254443" CDS complement(3062614..3063018) /locus_tag="STM2920" /note="similar to E. coli transcriptional regulator for cryptic hemolysin (AAC74714.1); Blastp hit to AAC74714.1 (146 aa), 27% identity in aa 1 - 135" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_461841.1" /db_xref="GI:16766226" /db_xref="GeneID:1254443" /translation="MELRNTAFHLLRQLFQQHTARWQHELPELTKPQYAVMRVIAEHP GIEQVDLTEAAVSTKATLAEMLSRMENRGLVKRENDPLDKRRRFVYLTVQGQTLLTAA IPLGDRVDDEFLGRLSAEEREQFTQLVRKMMT" regulatory complement(3063020..3063025) /regulatory_class="ribosome_binding_site" /locus_tag="STM2920" /note="putative RBS for STM2920; RegulonDB:STMS1H002977" gene 3063183..3063782 /locus_tag="STM2921" /db_xref="GeneID:1254444" regulatory 3063183..3063188 /regulatory_class="ribosome_binding_site" /locus_tag="STM2921" /note="putative RBS for STM2921; RegulonDB:STMS1H002978" CDS 3063189..3063782 /locus_tag="STM2921" /EC_number="4.1.1.-" /note="similar to E. coli 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (AAC75371.1); Blastp hit to AAC75371.1 (189 aa), 55% identity in aa 3 - 188" /codon_start=1 /transl_table=11 /product="phenolic acid decarboxylase" /protein_id="NP_461842.1" /db_xref="GI:16766227" /db_xref="GeneID:1254444" /translation="MRLIVGMTGATGAPLGVELLQALRAIPDVETHLVMSKWAKTTIE LETPYTPAEVAALADYCHSPADQAATISSGSFRTDGMIIIPCSMKTLAGVRAGYAEGL VGRAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAIVPPMPAFYNLPQTVDD IIQHIVARVLDQFGLEHTRTRRWQGLRQTANFSQENG" gene 3063774..3065209 /locus_tag="STM2922" /db_xref="GeneID:1254445" regulatory 3063774..3063779 /regulatory_class="ribosome_binding_site" /locus_tag="STM2921" /note="putative RBS for STM2922; RegulonDB:STMS1H002979" CDS 3063782..3065209 /locus_tag="STM2922" /note="similar to E. coli putative oxidoreductase (AAC76846.1); Blastp hit to AAC76846.1 (497 aa), 28% identity in aa 4 - 489" /codon_start=1 /transl_table=11 /product="phenolic acid decarboxylase" /protein_id="NP_461843.1" /db_xref="GI:16766228" /db_xref="GeneID:1254445" /translation="MAFDDLRSFLHALDQQGQLLKISEEVNAEPDLAAAANATGRIGD GAPALWFDNIRGFTDARVAMNTIGSWQNHAISLGLPPNTPVKKQIDEFIRRWDNFPVA PERRANPGWAENTVDGDAINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQ NVGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATP LKYDQSEYEMAGALRESPYPIATAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFT GHYSGGRNMTVVRIDKVSYRSKPIFESLYLGMPWTEIDYLMGPATCVPLYQQLKAEFP EVQAVNAMYTHGLLAIISTKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFN LPQVMWALSSKVNPAGDLVQLPNMSVLELDPGSSPAGITDKLIIDATTPVAPDNRGHY SQPVVDLPETKAWAEKLTAMLANRK" gene 3065213..3065456 /locus_tag="STM2923" /db_xref="GeneID:1254446" regulatory 3065213..3065218 /regulatory_class="ribosome_binding_site" /locus_tag="STM2923" /note="putative RBS for STM2923; RegulonDB:STMS1H002980" CDS 3065220..3065456 /locus_tag="STM2923" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461844.1" /db_xref="GI:16766229" /db_xref="GeneID:1254446" /translation="MICPRCADAHIELMATSPVKGVWTVYQCQHCLYTWRDTEPLRRT SREHYPQAFRMTQKDIDDAPMVPSIPPLLAEDKR" gene complement(3065501..3066506) /gene="rpoS" /locus_tag="STM2924" /db_xref="GeneID:1254447" CDS complement(3065501..3066493) /gene="rpoS" /locus_tag="STM2924" /note="major sigmafactor during stationary phase; RNA polymerase sigma factor RPOS (sigma-38). (SW:RPOS_SALTY)" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma factor RpoS" /protein_id="NP_461845.1" /db_xref="GI:16766230" /db_xref="GeneID:1254447" /translation="MSQNTLKVHDLNEDAEFDENGVEAFDEKALSEEEPSDNDLAEEE LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLAR RFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE" regulatory complement(3066501..3066506) /regulatory_class="ribosome_binding_site" /gene="rpoS" /locus_tag="STM2924" /note="putative RBS for rpoS; RegulonDB:STMS1H002981" gene complement(3066556..3067808) /gene="nlpD" /locus_tag="STM2925" /db_xref="GeneID:1254448" CDS complement(3066556..3067689) /gene="nlpD" /locus_tag="STM2925" /note="lipoprotein NLPD. (SW:NLPD_SALTY)" /codon_start=1 /transl_table=11 /product="lipoprotein NlpD" /protein_id="NP_461846.1" /db_xref="GI:16766231" /db_xref="GeneID:1254448" /translation="MSAGSPKFTVSRIAALSLVSLWLAGCTSSSNPPAPVTSVDSGSS SNTNSGMLITPPPKMGATTQQTPQQAPQIQPVQRPVTQPMQTQPVTEQPVQMENGRIV YNRQYGNIPKGSYTGGSTYTVKKGDTLFYIAWITGNDFRDLAQRNSISAPYSLNVGQT LQVGNASGTPITGGNAITQADAAQQGVVTRSAQNSTVAVASQPTITYSEGSGEQSANK MLPNNKPAGTVVTAPVTAPTVSTTEPNASSTSTSAPISAWRWPTDGKVIENFGASEGG NKGIDIAGSKGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVRE QQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR" regulatory complement(3067695..3067700) /regulatory_class="ribosome_binding_site" /gene="nlpD" /locus_tag="STM2925" /note="putative RBS for nlpD; RegulonDB:STMS1H002982" regulatory complement(3067780..3067788) /regulatory_class="minus_10_signal" /gene="nlpD" /locus_tag="STM2925" /note="putative -10_signal for nlpD; RegulonDB:STMLTH004565" regulatory complement(3067800..3067808) /regulatory_class="minus_35_signal" /gene="nlpD" /locus_tag="STM2925" /note="putative -35_signal for nlpD; RegulonDB:STMLTH004565" gene complement(3067865..3068508) /gene="pcm" /locus_tag="STM2926" /db_xref="GeneID:1254449" CDS complement(3067865..3068491) /gene="pcm" /locus_tag="STM2926" /EC_number="2.1.1.77" /note="similar to E. coli L-isoaspartate protein carboxylmethyltransferase type II (AAC75785.1); Blastp hit to AAC75785.1 (208 aa), 94% identity in aa 1 - 208" /codon_start=1 /transl_table=11 /product="protein-L-isoaspartate O-methyltransferase" /protein_id="NP_461847.1" /db_xref="GI:16766232" /db_xref="GeneID:1254449" /translation="MVSGRVQALLEQLRAQGIRDEQVLNALAAVPREKFIDEAFEHKA WENIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVHHVCS VERIKGLQWQARRRLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMA QLDEGGILVLPVGDEQQFLKRVRRRGGEFIIDTVEAVRFVPLVKGELA" gene complement(3068485..3069256) /gene="surE" /locus_tag="STM2927" /db_xref="GeneID:1254450" CDS complement(3068485..3069246) /gene="surE" /locus_tag="STM2927" /note="similar to E. coli survival protein (AAC75786.1); Blastp hit to AAC75786.1 (253 aa), 91% identity in aa 1 - 253" /codon_start=1 /transl_table=11 /product="5'/3'-nucleotidase SurE" /protein_id="NP_461848.1" /db_xref="GI:16766233" /db_xref="GeneID:1254450" /translation="MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNS LTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVI YSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNV PDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVD EGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW" regulatory complement(3068503..3068508) /regulatory_class="ribosome_binding_site" /gene="pcm" /locus_tag="STM2926" /note="putative RBS for pcm; RegulonDB:STMS1H002983" gene complement(3069227..3070287) /gene="ygbO" /locus_tag="STM2928" /db_xref="GeneID:1254451" CDS complement(3069227..3070276) /gene="ygbO" /locus_tag="STM2928" /note="similar to E. coli putative hydrogenase subunit (AAC75787.1); Blastp hit to AAC75787.1 (349 aa), 89% identity in aa 1 - 349" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine(13) synthase TruD" /protein_id="NP_461849.1" /db_xref="GI:16766234" /db_xref="GeneID:1254451" /translation="MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHI LLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFS AFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYF GAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQ VVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQ DAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVV RELINTMGDYAHIAE" regulatory complement(3069251..3069256) /regulatory_class="ribosome_binding_site" /gene="surE" /locus_tag="STM2927" /note="putative RBS for surE; RegulonDB:STMS1H002984" gene complement(3070273..3070766) /gene="ispF" /locus_tag="STM2929" /db_xref="GeneID:1254452" CDS complement(3070273..3070752) /gene="ispF" /locus_tag="STM2929" /note="similar to E. coli orf, hypothetical protein (AAC75788.1); Blastp hit to AAC75788.1 (159 aa), 98% identity in aa 1 - 159" /codon_start=1 /transl_table=11 /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase" /protein_id="NP_461850.1" /db_xref="GI:16766235" /db_xref="GeneID:1254452" /translation="MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHAL TDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQA PKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK" regulatory complement(3070282..3070287) /regulatory_class="ribosome_binding_site" /gene="ispF" /locus_tag="STM2929" /note="putative RBS for ygbO; RegulonDB:STMS1H002985" gene complement(3070752..3071474) /gene="ispD" /locus_tag="STM2930" /db_xref="GeneID:1254453" CDS complement(3070752..3071462) /gene="ispD" /locus_tag="STM2930" /note="similar to E. coli orf, hypothetical protein (AAC75789.1); Blastp hit to AAC75789.1 (236 aa), 91% identity in aa 1 - 234" /codon_start=1 /transl_table=11 /product="2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" /protein_id="NP_461851.1" /db_xref="GI:16766236" /db_xref="GeneID:1254453" /translation="MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHA LLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWV LVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADL WHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPE DLALAEFYLTRTIHQEKA" regulatory complement(3070761..3070766) /regulatory_class="ribosome_binding_site" /gene="ispF" /locus_tag="STM2929" /note="putative RBS for ispF; RegulonDB:STMS1H002986" regulatory complement(3071469..3071474) /regulatory_class="ribosome_binding_site" /gene="ispD" /locus_tag="STM2930" /note="putative RBS for ispD; RegulonDB:STMS1H002987" gene complement(3071481..3071803) /gene="ygbQ" /locus_tag="STM2931" /db_xref="GeneID:1254454" CDS complement(3071481..3071792) /gene="ygbQ" /locus_tag="STM2931" /note="similar to E. coli orf, hypothetical protein (AAC75790.1); Blastp hit to AAC75790.1 (103 aa), 91% identity in aa 1 - 103" /codon_start=1 /transl_table=11 /product="cell division protein FtsB" /protein_id="NP_461852.1" /db_xref="GI:16766237" /db_xref="GeneID:1254454" /translation="MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNA KLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTH R" regulatory complement(3071798..3071803) /regulatory_class="ribosome_binding_site" /gene="ygbQ" /locus_tag="STM2931" /note="putative RBS for ygbQ; RegulonDB:STMS1H002988" gene complement(3071983..3072349) /gene="ygbE" /locus_tag="STM2932" /db_xref="GeneID:1254455" CDS complement(3071983..3072339) /gene="ygbE" /locus_tag="STM2932" /note="similar to E. coli putative cytochrome oxidase subunit (AAC75791.1); Blastp hit to AAC75791.1 (107 aa), 66% identity in aa 1 - 107" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461853.3" /db_xref="GI:1109557724" /db_xref="GeneID:1254455" /translation="MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFV SWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTL LAVGALFGALFIWLLG" regulatory complement(3072344..3072349) /regulatory_class="ribosome_binding_site" /gene="ygbE" /locus_tag="STM2932" /note="putative RBS for ygbE; RegulonDB:STMS1H002989" gene complement(3072357..3072975) /gene="cysC" /locus_tag="STM2933" /db_xref="GeneID:1254456" CDS complement(3072357..3072962) /gene="cysC" /locus_tag="STM2933" /EC_number="2.7.1.25" /note="similar to E. coli adenosine 5'-phosphosulfate kinase (AAC75792.1); Blastp hit to AAC75792.1 (201 aa), 85% identity in aa 1 - 201" /codon_start=1 /transl_table=11 /product="adenylyl-sulfate kinase" /protein_id="NP_461854.1" /db_xref="GI:16766239" /db_xref="GeneID:1254456" /translation="MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTV AGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLI VLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFT GIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS" gene complement(3072949..3074399) /gene="cysN" /locus_tag="STM2934" /db_xref="GeneID:1254457" CDS complement(3072949..3074388) /gene="cysN" /locus_tag="STM2934" /EC_number="2.7.7.4" /note="similar to E. coli ATP-sulfurylase (ATP:sulfate adenylyltransferase), subunit 1, probably a GTPase (AAC75793.1); Blastp hit to AAC75793.1 (475 aa), 87% identity in aa 1 - 475" /codon_start=1 /transl_table=11 /product="sulfate adenylyltransferase subunit CysN" /protein_id="NP_461855.1" /db_xref="GI:16766240" /db_xref="GeneID:1254457" /translation="MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLI GRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF STERRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGI KHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSA NMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGE RIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPA RHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNG IGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSA FELELNALVRRHFPHWDARDLLGDKHGAA" regulatory complement(3072970..3072975) /regulatory_class="ribosome_binding_site" /gene="cysC" /locus_tag="STM2933" /note="putative RBS for cysC; RegulonDB:STMS1H002990" regulatory complement(3074394..3074399) /regulatory_class="ribosome_binding_site" /gene="cysN" /locus_tag="STM2934" /note="putative RBS for cysN; RegulonDB:STMS1H002991" gene complement(3074398..3075386) /gene="cysD" /locus_tag="STM2935" /db_xref="GeneID:1254458" CDS complement(3074398..3075306) /gene="cysD" /locus_tag="STM2935" /EC_number="2.7.7.4" /note="similar to E. coli ATP:sulfurylase (ATP:sulfate adenylyltransferase), subunit 2 (AAC75794.1); Blastp hit to AAC75794.1 (302 aa), 97% identity in aa 1 - 302" /codon_start=1 /transl_table=11 /product="sulfate adenylyltransferase small subunit" /protein_id="NP_461856.1" /db_xref="GI:16766241" /db_xref="GeneID:1254458" /translation="MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVML HLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINP FVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDP KNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLE RDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVST TSERQGRMIDRDQAGSMELKKRQGYF" regulatory complement(3075312..3075317) /regulatory_class="ribosome_binding_site" /gene="cysD" /locus_tag="STM2935" /note="putative RBS for cysD; RegulonDB:STMS1H002992" regulatory complement(3075362..3075370) /regulatory_class="minus_10_signal" /gene="cysD" /locus_tag="STM2935" /note="putative -10_signal for cysD; RegulonDB:STMLTH004566" regulatory complement(3075378..3075386) /regulatory_class="minus_35_signal" /gene="cysD" /locus_tag="STM2935" /note="putative -35_signal for cysD; RegulonDB:STMLTH004566" gene 3075546..3076603 /gene="iap" /locus_tag="STM2936" /db_xref="GeneID:1254459" regulatory 3075546..3075551 /regulatory_class="ribosome_binding_site" /gene="iap" /locus_tag="STM2936" /note="putative RBS for iap; RegulonDB:STMS1H002993" CDS 3075557..3076603 /gene="iap" /locus_tag="STM2936" /EC_number="3.4.11.-" /note="similar to E. coli alkaline phosphatase isozyme conversion, aminopeptidase (AAC75795.1); Blastp hit to AAC75795.1 (345 aa), 85% identity in aa 1 - 344" /codon_start=1 /transl_table=11 /product="aminopeptidase" /protein_id="NP_461857.1" /db_xref="GI:16766242" /db_xref="GeneID:1254459" /translation="MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFF PGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIA AHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKD IPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGK NTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSV EATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIM LPLVKELAKAEKTS" gene complement(3078251..3078559) /gene="ygbF" /locus_tag="STM2937" /db_xref="GeneID:1254460" CDS complement(3078251..3078547) /gene="ygbF" /locus_tag="STM2937" /note="similar to E. coli orf, hypothetical protein (AAC75796.1); Blastp hit to AAC75796.1 (116 aa), 84% identity in aa 23 - 116" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461858.1" /db_xref="GI:16766243" /db_xref="GeneID:1254460" /translation="MMSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMI WQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ" gene complement(3078544..3079477) /locus_tag="STM2938" /db_xref="GeneID:1254461" CDS complement(3078544..3079464) /locus_tag="STM2938" /note="similar to E. coli orf, hypothetical protein (AAC75797.1); Blastp hit to AAC75797.1 (305 aa), 85% identity in aa 1 - 303" /codon_start=1 /transl_table=11 /product="subtype I-E CRISPR-associated endonuclease Cas1" /protein_id="NP_461859.1" /db_xref="GI:16766244" /db_xref="GeneID:1254461" /translation="MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHI PVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQ AKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKW HGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYD IADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGE IEPPQPAPDMLPPAIPEPESLGDSGHRGHG" regulatory complement(3078554..3078559) /regulatory_class="ribosome_binding_site" /gene="ygbF" /locus_tag="STM2937" /note="putative RBS for ygbF; RegulonDB:STMS1H002994" gene complement(3079461..3080122) /gene="ygcH" /locus_tag="STM2939" /db_xref="GeneID:1254462" CDS complement(3079461..3080111) /gene="ygcH" /locus_tag="STM2939" /note="similar to E. coli orf, hypothetical protein (AAC75798.1); Blastp hit to AAC75798.1 (199 aa), 28% identity in aa 3 - 198" /codon_start=1 /transl_table=11 /product="type I-E CRISPR-associated protein Cas6/Cse3/CasE" /protein_id="NP_461860.1" /db_xref="GI:16766245" /db_xref="GeneID:1254462" /translation="MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQ FLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKN GKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQ IRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA" regulatory complement(3079472..3079477) /regulatory_class="ribosome_binding_site" /gene="ygcH" /locus_tag="STM2939" /note="putative RBS for STM2938; RegulonDB:STMS1H002995" gene complement(3080093..3080851) /locus_tag="STM2940" /db_xref="GeneID:1254463" CDS complement(3080093..3080839) /locus_tag="STM2940" /note="similar to E. coli orf, hypothetical protein (AAC75799.1); Blastp hit to AAC75799.1 (226 aa), 35% identity in aa 3 - 159" /codon_start=1 /transl_table=11 /product="type I-E CRISPR-associated protein Cas5/CasD" /protein_id="NP_461861.1" /db_xref="GI:16766246" /db_xref="GeneID:1254463" /translation="MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAAL GIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPE LLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPL APQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDM PLSRQQWLFGERSVNQGPWLRKEDACISQE" regulatory complement(3080117..3080122) /regulatory_class="ribosome_binding_site" /gene="ygcH" /locus_tag="STM2939" /note="putative RBS for ygcH; RegulonDB:STMS1H002996" regulatory complement(3080846..3080851) /regulatory_class="ribosome_binding_site" /locus_tag="STM2940" /note="putative RBS for STM2940; RegulonDB:STMS1H002997" gene complement(3080850..3081921) /gene="yghJ" /locus_tag="STM2941" /db_xref="GeneID:1254464" CDS complement(3080850..3081908) /gene="yghJ" /locus_tag="STM2941" /note="similar to E. coli orf, hypothetical protein (AAC75800.1); Blastp hit to AAC75800.1 (363 aa), 29% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="type I-E CRISPR-associated protein Cas7/Cse4/CasC" /protein_id="NP_461862.1" /db_xref="GI:16766247" /db_xref="GeneID:1254464" /translation="MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSL KRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVK EDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVD IAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLG ETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRA YASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASF DVMNQQGSMEDVLDFICA" regulatory complement(3081916..3081921) /regulatory_class="ribosome_binding_site" /gene="yghJ" /locus_tag="STM2941" /note="putative RBS for yghJ; RegulonDB:STMS1H002998" gene complement(3081922..3082490) /locus_tag="STM2942" /db_xref="GeneID:1254465" CDS complement(3081922..3082482) /locus_tag="STM2942" /codon_start=1 /transl_table=11 /product="type I-E CRISPR-associated protein Cse2/CasB" /protein_id="NP_461863.1" /db_xref="GI:16766248" /db_xref="GeneID:1254465" /translation="MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGL HSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSK LRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQR PTEFLRIRWALEYYQAGDGDTDNEQD" gene complement(3082479..3084035) /locus_tag="STM2943" /db_xref="GeneID:1254466" CDS complement(3082479..3084035) /locus_tag="STM2943" /note="similar to E. coli orf, hypothetical protein (AAC75802.1); Blastp hit to AAC75802.1 (502 aa), 28% identity in aa 2 - 289" /codon_start=1 /transl_table=11 /product="type I-E CRISPR-associated protein Cse1/CasA" /protein_id="NP_461864.1" /db_xref="GI:16766249" /db_xref="GeneID:1254466" /translation="MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADL QGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFM QDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNA PAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDA TVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDE LLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQT EANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDL RKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENG HKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKA AKAKKQEAAE" regulatory complement(3082485..3082490) /regulatory_class="ribosome_binding_site" /locus_tag="STM2942" /note="putative RBS for STM2942; RegulonDB:STMS1H002999" gene complement(3084047..3086721) /gene="ygcB" /locus_tag="STM2944" /db_xref="GeneID:1254467" CDS complement(3084047..3086710) /gene="ygcB" /locus_tag="STM2944" /note="similar to E. coli orf, hypothetical protein (AAC75803.1); Blastp hit to AAC75803.1 (888 aa), 30% identity in aa 7 - 849" /codon_start=1 /transl_table=11 /product="CRISPR-associated helicase/endonuclease Cas3" /protein_id="NP_461865.1" /db_xref="GI:16766250" /db_xref="GeneID:1254467" /translation="MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIY FIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEK IAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELD HFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGS ASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQ QKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANA MFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQG CAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAW MSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPW LTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDD AIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIAT QVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRIL APEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYG EDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEES VTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQH QDKDFATVIVVTDFAACGYSANEGLIGMMGE" regulatory complement(3086716..3086721) /regulatory_class="ribosome_binding_site" /gene="ygcB" /locus_tag="STM2944" /note="putative RBS for ygcB; RegulonDB:STMS1H003000" gene 3087148..3088108 /gene="sopD" /locus_tag="STM2945" /db_xref="GeneID:1254468" regulatory 3087148..3087153 /regulatory_class="ribosome_binding_site" /gene="sopD" /locus_tag="STM2945" /note="putative RBS for sopD; RegulonDB:STMS1H003001" CDS 3087155..3088108 /gene="sopD" /locus_tag="STM2945" /note="hypothetical 36.1 Kda protein in cysH 3'region (ORF4). (SW:YGCC_SALTY)" /codon_start=1 /transl_table=11 /product="secreted protein in the Sop family; transferred to eukaryotic cells" /protein_id="NP_461866.1" /db_xref="GI:16766251" /db_xref="GeneID:1254468" /translation="MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHF RAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIK MDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTW HPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACI NAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQ DYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT" gene complement(3088196..3088939) /gene="cysH" /locus_tag="STM2946" /db_xref="GeneID:1254469" CDS complement(3088196..3088930) /gene="cysH" /locus_tag="STM2946" /EC_number="1.8.99.-" /note="phosphoadenosine phosphosulfate reductase; PAPS; (SW:CYSH_SALTY)" /codon_start=1 /transl_table=11 /product="phosphoadenosine phosphosulfate reductase" /protein_id="NP_461867.1" /db_xref="GI:16766252" /db_xref="GeneID:1254469" /translation="MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENL PGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLK VYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQ SGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTT RKWEPGMAEEETRFFGLKRECGLHEG" regulatory complement(3088934..3088939) /regulatory_class="ribosome_binding_site" /gene="cysH" /locus_tag="STM2946" /note="putative RBS for cysH; RegulonDB:STMS1H003002" gene complement(3089006..3090731) /gene="cysI" /locus_tag="STM2947" /db_xref="GeneID:1254470" CDS complement(3089006..3090718) /gene="cysI" /locus_tag="STM2947" /EC_number="1.8.1.2" /note="sulfite reductase [NADPH] hemoprotein beta-component. (SW:CYSI_SALTY)" /codon_start=1 /transl_table=11 /product="sulfite reductase subunit beta" /protein_id="NP_461868.1" /db_xref="GI:16766253" /db_xref="GeneID:1254470" /translation="MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGF KGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKF AADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSN PYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKT TVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGY LPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPI RPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRI TANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERF LPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGN RIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPAR DFWE" gene complement(3090718..3092582) /gene="cysJ" /locus_tag="STM2948" /db_xref="GeneID:1254471" CDS complement(3090718..3092517) /gene="cysJ" /locus_tag="STM2948" /EC_number="1.8.1.2" /note="sulfite reductase [NADPH] flavoprotein alpha-component. (SW:CYSJ_SALTY)" /codon_start=1 /transl_table=11 /product="sulfite reductase [NADPH] flavoprotein subunit alpha" /protein_id="NP_461869.1" /db_xref="GI:16766254" /db_xref="GeneID:1254471" /translation="MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVL NPRSGAVAVTPVPERKMPRVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYK FKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEF FCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSV ATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDAL GVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYAT LTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIAS AQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPAN PETPVIMIGPGTGIAPFRSFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKE GVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKAL LEVIAEFGGMDLESADEYLSELRVERRYQRDVY" regulatory complement(3090726..3090731) /regulatory_class="ribosome_binding_site" /gene="cysI" /locus_tag="STM2947" /note="putative RBS for cysI; RegulonDB:STMS1H003003" regulatory complement(3092529..3092534) /regulatory_class="ribosome_binding_site" /gene="cysJ" /locus_tag="STM2948" /note="putative RBS for cysJ; RegulonDB:STMS1H003004" regulatory complement(3092555..3092563) /regulatory_class="minus_10_signal" /gene="cysJ" /locus_tag="STM2948" /note="putative -10_signal for cysJ; RegulonDB:STMLTH004567" regulatory complement(3092574..3092582) /regulatory_class="minus_35_signal" /gene="cysJ" /locus_tag="STM2948" /note="putative -35_signal for cysJ; RegulonDB:STMLTH004567" protein_bind complement(3092675..3092717) /note="putative binding site for CysB, RegulonDB: STMS1H000127" /bound_moiety="CysB" gene 3092941..3093303 /gene="ptpS" /locus_tag="STM2949" /db_xref="GeneID:1254472" CDS 3092941..3093303 /gene="ptpS" /locus_tag="STM2949" /EC_number="4.2.3.12" /note="similar to E. coli putative 6-pyruvoyl tetrahydrobiopterin synthase (AAC75807.1); Blastp hit to AAC75807.1 (121 aa), 94% identity in aa 2 - 121" /codon_start=1 /transl_table=11 /product="6-carboxytetrahydropterin synthase QueD" /protein_id="NP_461870.1" /db_xref="GI:16766255" /db_xref="GeneID:1254472" /translation="MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEV DPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLL SAVMVKETCTAGCVYRGE" gene complement(3093391..3094196) /locus_tag="STM2950" /db_xref="GeneID:1254473" CDS complement(3093391..3094188) /locus_tag="STM2950" /codon_start=1 /transl_table=11 /product="MBL fold metallo-hydrolase" /protein_id="NP_461871.1" /db_xref="GI:16766256" /db_xref="GeneID:1254473" /translation="MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGP DGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDSSRIICHPDIARERYAAMT FLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAE PDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRSYALVGGFHLRCAS PFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF" regulatory complement(3094191..3094196) /regulatory_class="ribosome_binding_site" /locus_tag="STM2950" /note="putative RBS for STM2950; RegulonDB:STMS1H003005" gene complement(3096564..3097244) /gene="ygcF" /locus_tag="STM2951" /db_xref="GeneID:1254474" CDS complement(3096564..3097235) /gene="ygcF" /locus_tag="STM2951" /note="similar to E. coli orf, hypothetical protein (AAC75819.1); Blastp hit to AAC75819.1 (223 aa), 95% identity in aa 1 - 223" /codon_start=1 /transl_table=11 /product="7-carboxy-7-deazaguanine synthase QueE" /protein_id="NP_461872.1" /db_xref="GI:16766257" /db_xref="GeneID:1254474" /translation="MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTW DKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLM PLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKH PVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHK YLNIA" regulatory complement(3097239..3097244) /regulatory_class="ribosome_binding_site" /gene="ygcF" /locus_tag="STM2951" /note="putative RBS for ygcF; RegulonDB:STMS1H003006" gene complement(3097371..3098681) /gene="eno" /locus_tag="STM2952" /db_xref="GeneID:1254475" CDS complement(3097371..3098669) /gene="eno" /locus_tag="STM2952" /EC_number="4.2.1.11" /note="similar to E. coli enolase (AAC75821.1); Blastp hit to AAC75821.1 (432 aa), 98% identity in aa 1 - 432" /codon_start=1 /transl_table=11 /product="phosphopyruvate hydratase" /protein_id="NP_461873.1" /db_xref="GI:16766258" /db_xref="GeneID:1254475" /translation="MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTG SREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTEN KSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHA DNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGS NAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHF LEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKG IANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQI KTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA" regulatory complement(3098676..3098681) /regulatory_class="ribosome_binding_site" /gene="eno" /locus_tag="STM2952" /note="putative RBS for eno; RegulonDB:STMS1H003007" gene complement(3098752..3100399) /gene="pyrG" /locus_tag="STM2953" /db_xref="GeneID:1254476" CDS complement(3098752..3100389) /gene="pyrG" /locus_tag="STM2953" /EC_number="6.3.4.2" /note="similar to E. coli CTP synthetase (AAC75822.1); Blastp hit to AAC75822.1 (545 aa), 95% identity in aa 1 - 545" /codon_start=1 /transl_table=11 /product="CTP synthase" /protein_id="NP_461874.1" /db_xref="GI:16766259" /db_xref="GeneID:1254476" /translation="MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPY INVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRK ERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQL AVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPA NERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEW EQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVE TRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARN VAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSD DSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPW FVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK" regulatory complement(3100394..3100399) /regulatory_class="ribosome_binding_site" /gene="pyrG" /locus_tag="STM2953" /note="putative RBS for pyrG; RegulonDB:STMS1H003008" gene complement(3100617..3101417) /gene="mazG" /locus_tag="STM2954" /db_xref="GeneID:1254477" CDS complement(3100617..3101417) /gene="mazG" /locus_tag="STM2954" /note="similar to E. coli orf, hypothetical protein (AAC75823.1); Blastp hit to AAC75823.1 (263 aa), 93% identity in aa 2 - 263" /codon_start=1 /transl_table=11 /product="nucleoside triphosphate pyrophosphohydrolase" /protein_id="NP_461875.1" /db_xref="GI:16766260" /db_xref="GeneID:1254477" /translation="MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETY EVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHV FGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGF DWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELA LQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL" gene complement(3102447..3102808) /locus_tag="STM2955" /db_xref="GeneID:1254478" CDS complement(3102447..3102803) /locus_tag="STM2955" /codon_start=1 /transl_table=11 /product="putative transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain" /protein_id="NP_461876.3" /db_xref="GI:1109557725" /db_xref="GeneID:1254478" /translation="MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLI ESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKT GMIKPDENGKINAKGQ" regulatory complement(3102803..3102808) /regulatory_class="ribosome_binding_site" /locus_tag="STM2955" /note="putative RBS for STM2955; RegulonDB:STMS1H003009" gene complement(3102887..3105310) /gene="relA" /locus_tag="STM2956" /db_xref="GeneID:1254479" CDS complement(3102887..3105121) /gene="relA" /locus_tag="STM2956" /EC_number="2.7.6.5" /note="similar to E. coli (p)ppGpp synthetase I (GTP pyrophosphokinase); regulation of RNA synthesis; stringent factor (AAC75826.1); Blastp hit to AAC75826.1 (744 aa), 96% identity in aa 1 - 743" /codon_start=1 /transl_table=11 /product="GTP diphosphokinase" /protein_id="NP_461877.1" /db_xref="GI:16766262" /db_xref="GeneID:1254479" /translation="MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQ QTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKS IVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHL REVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLL HERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDV RAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTV EIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGE MLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVP FTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAG RQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNK PSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGF ITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRD ITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARR LHGG" regulatory complement(3105128..3105133) /regulatory_class="ribosome_binding_site" /gene="relA" /locus_tag="STM2956" /note="putative RBS for relA; RegulonDB:STMS1H003010" gene complement(3105173..3106475) /gene="ygcA" /locus_tag="STM2957" /db_xref="GeneID:1254480" CDS complement(3105173..3106468) /gene="ygcA" /locus_tag="STM2957" /EC_number="2.1.1.-" /note="similar to E. coli putative enzyme (AAC75827.1); Blastp hit to AAC75827.1 (433 aa), 84% identity in aa 1 - 432" /codon_start=1 /transl_table=11 /product="23S rRNA (uracil(1939)-C(5))-methyltransferase" /protein_id="NP_461878.1" /db_xref="GI:16766263" /db_xref="GeneID:1254480" /translation="MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGL LPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQR SKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQ CPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKL ERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVAR ALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHN VTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPAT LARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM" regulatory complement(3105285..3105293) /regulatory_class="minus_10_signal" /gene="ygcA" /locus_tag="STM2957" /note="putative -10_signal for relA; RegulonDB:STMLTH004568" regulatory complement(3105302..3105310) /regulatory_class="minus_35_signal" /gene="ygcA" /locus_tag="STM2957" /note="putative -35_signal for relA; RegulonDB:STMLTH004568" regulatory complement(3106470..3106475) /regulatory_class="ribosome_binding_site" /gene="ygcA" /locus_tag="STM2957" /note="putative RBS for ygcA; RegulonDB:STMS1H003011" gene 3106516..3109282 /gene="barA" /locus_tag="STM2958" /db_xref="GeneID:1254481" regulatory 3106516..3106521 /regulatory_class="ribosome_binding_site" /gene="barA" /locus_tag="STM2958" /note="putative RBS for barA; RegulonDB:STMS1H003012" CDS 3106526..3109282 /gene="barA" /locus_tag="STM2958" /EC_number="2.7.3.-" /note="similar to E. coli sensor-regulator, activates OmpR by phophorylation (AAC75828.1); Blastp hit to AAC75828.1 (918 aa), 90% identity in aa 1 - 918" /codon_start=1 /transl_table=11 /product="two-component sensor histidine kinase BarA" /protein_id="NP_461879.1" /db_xref="GI:16766264" /db_xref="GeneID:1254481" /translation="MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDA GASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFH LDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYV ALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRR GQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQN VELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTI ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTL NIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIR DTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNR GSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYS PTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKL KQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKL IGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQ QTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPE PAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGL VDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAK KILG" gene complement(3109326..3110474) /locus_tag="STM2959" /db_xref="GeneID:1254482" CDS complement(3109326..3110468) /locus_tag="STM2959" /note="similar to E. coli orf, hypothetical protein (AAC76158.1); Blastp hit to AAC76158.1 (408 aa), 68% identity in aa 28 - 405" /codon_start=1 /transl_table=11 /product="glycerate kinase" /protein_id="NP_461880.1" /db_xref="GI:16766265" /db_xref="GeneID:1254482" /translation="MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADG GEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPA QRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGND IAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEM IERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDAL HLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVH EHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR" regulatory complement(3110469..3110474) /regulatory_class="ribosome_binding_site" /locus_tag="STM2959" /note="putative RBS for STM2959; RegulonDB:STMS1H003013" gene complement(3110546..3111898) /gene="gudD" /locus_tag="STM2960" /db_xref="GeneID:1254483" CDS complement(3110546..3111886) /gene="gudD" /locus_tag="STM2960" /EC_number="4.2.1.40" /note="similar to E. coli putative glucarate dehydratase (AAC75829.1); Blastp hit to AAC75829.1 (446 aa), 97% identity in aa 1 - 446" /codon_start=1 /transl_table=11 /product="glucarate dehydratase" /protein_id="NP_461881.1" /db_xref="GI:16766266" /db_xref="GeneID:1254483" /translation="MSTQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIK DNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTAVRNQFADRDAGGRGLQ TFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKAT PLPYQSQPDEQCDWYRLRHEEAMTPETVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAE SIVALAKRFPQARVTLDPNGAWSLNEAISIGKYLKGSLAYAEDPCGAEQGFSGREVMA EFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGL TWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGMVQV PTKPGLGVELDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR" regulatory complement(3111893..3111898) /regulatory_class="ribosome_binding_site" /gene="gudD" /locus_tag="STM2960" /note="putative RBS for gudD; RegulonDB:STMS1H003014" gene complement(3111907..3113260) /gene="ygcY" /locus_tag="STM2961" /db_xref="GeneID:1254484" CDS complement(3111907..3113247) /gene="ygcY" /locus_tag="STM2961" /EC_number="4.2.1.40" /note="similar to E. coli putative glucarate dehydratase (AAC75830.1); Blastp hit to AAC75830.1 (446 aa), 95% identity in aa 1 - 446" /codon_start=1 /transl_table=11 /product="putative d-glucarate dehydratase" /protein_id="NP_461882.1" /db_xref="GI:16766267" /db_xref="GeneID:1254484" /translation="MTTQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVILTD NAGHTGVGEAPGGEVIYQTLVDAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGA WTFELRVNAVAALEAALLDLLGQALNVPVCELLGPGKQRDAVTVLGYLFYIGDRTKTD LPYLESTPGSHEWYRLRHQEALDSDAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDT VRALKKRFPDARITVDPNGAWLLDEAIALCKGLNDVLTYAEDPCGAEQGFSGREVMAE FRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLTGAVRVAQLCDDWGLT WGCHSNNHFDISLAMFTHVGAAAPGKPTAIDTHWIWQEGDCRLTKNPLEIKNGKIAVP DAPGLGVELDWEQVRKAHDAYKKLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH" gene complement(3113244..3114615) /gene="gudT" /locus_tag="STM2962" /db_xref="GeneID:1254485" CDS complement(3113244..3114602) /gene="gudT" /locus_tag="STM2962" /note="similar to E. coli putative transport protein (AAC75831.1); Blastp hit to AAC75831.1 (450 aa), 96% identity in aa 1 - 450" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_461883.1" /db_xref="GI:16766268" /db_xref="GeneID:1254485" /translation="MSSLSHAASSAEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGS EMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWSVFTLLQ GFVDIFSGFGIIVALFTLRFLVGLAESPSFPGNSRIVAAWFPAQERGTAVAIFNSAQY FATVIFAPIMGWLTHEVGWSHVFFFMGGLGIIISFIWLKVIHEPNNHPGVNKKELEYI AEGGALINMDQKDTKAKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFP VYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGSLNIARKTPIVLGM LLSMVMVFCNYVNVEWMIIGFMALAFFGKGIGALGWAVMADTAPKEISGLSGGLFNMF GNISGIVTPIAIGYIVGTTGSFNGALIYVGVHALVAIISYLVLVGDIKRIELKPVAGQ LS" regulatory complement(3113255..3113260) /regulatory_class="ribosome_binding_site" /gene="ygcY" /locus_tag="STM2961" /note="putative RBS for ygcY; RegulonDB:STMS1H003015" regulatory complement(3114610..3114615) /regulatory_class="ribosome_binding_site" /gene="gudT" /locus_tag="STM2962" /note="putative RBS for gudT; RegulonDB:STMS1H003016" gene complement(3115083..3115548) /locus_tag="STM2963" /db_xref="GeneID:1254486" CDS complement(3115083..3115532) /locus_tag="STM2963" /note="similar to E. coli orf, hypothetical protein (AAC75832.1); Blastp hit to AAC75832.1 (149 aa), 88% identity in aa 1 - 149" /codon_start=1 /transl_table=11 /product="flavodoxin" /protein_id="NP_461884.1" /db_xref="GI:16766269" /db_xref="GeneID:1254486" /translation="MAEIGIFVGTMYGNSLLVAEEAEAILARQGHSATVFEDPELSDW QQYQDKVALVVTSTTGQGDLPDSIAPLFHGIKDTVGFQPNLRYGVIALGDSSYPNFCN GGKQFDALLQEQSAQRVGEMLFIDASEHPEPESQSNPWVENWGTLLS" regulatory complement(3115543..3115548) /regulatory_class="ribosome_binding_site" /locus_tag="STM2963" /note="putative RBS for STM2963; RegulonDB:STMS1H003017" gene complement(3115551..3116333) /gene="yqcB" /locus_tag="STM2964" /db_xref="GeneID:1254487" CDS complement(3115551..3116333) /gene="yqcB" /locus_tag="STM2964" /note="similar to E. coli orf, hypothetical protein (AAC75833.1); Blastp hit to AAC75833.1 (260 aa), 89% identity in aa 1 - 255" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine(65) synthase TruC" /protein_id="NP_461885.1" /db_xref="GI:16766270" /db_xref="GeneID:1254487" /translation="MLEILYQDPWLVAVNKPAGWLVHRSWLDRDEKVVVMQTVRDQIG QHVFTAHRLDRPTSGVLLMGLSSEAGRRLAQQFEQHHIRKRYHAIVRGWLMDDAVLDY PLVEERDKIADKFAREDKAPQPAVTQYRGLATVEMAVPTGRYPTTRYGLVELEPKTGR KHQLRRHLAHLRHPIIGDSKHGDLRQNRSAAEHFACRRLMLHASRLELTHPFTGQPLI IQAGLDETWMQALTQFGWRGLLPDNERVEFTAASRQDETHLT" gene complement(3116333..3116674) /gene="yqcC" /locus_tag="STM2965" /db_xref="GeneID:1254488" CDS complement(3116333..3116662) /gene="yqcC" /locus_tag="STM2965" /note="similar to E. coli orf, hypothetical protein (AAC75834.1); Blastp hit to AAC75834.1 (109 aa), 80% identity in aa 1 - 109" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461886.1" /db_xref="GI:16766271" /db_xref="GeneID:1254488" /translation="MTTHDRVRQQLHTLETLLREHRHWRQDAPQAHLFTSTQPFFMDT MEPLEWLQWVLIPRMHTLLDNAQPLPEAFAVAPYYEMALAADHPQRETILAVLQDLDA LFARDKS" regulatory complement(3116669..3116674) /regulatory_class="ribosome_binding_site" /gene="yqcC" /locus_tag="STM2965" /note="putative RBS for yqcC; RegulonDB:STMS1H003018" gene complement(3116703..3117057) /gene="csrB" /locus_tag="STM2966" /db_xref="GeneID:1254489" ncRNA complement(3116703..3117057) /ncRNA_class="other" /gene="csrB" /locus_tag="STM2966" /product="regulatory RNA" /db_xref="GeneID:1254489" gene complement(3117274..3117828) /gene="syd" /locus_tag="STM2967" /db_xref="GeneID:1254490" CDS complement(3117274..3117819) /gene="syd" /locus_tag="STM2967" /note="similar to E. coli interacts with secY (AAC75835.1); Blastp hit to AAC75835.1 (181 aa), 83% identity in aa 1 - 181" /codon_start=1 /transl_table=11 /product="SecY-interacting protein" /protein_id="NP_461887.1" /db_xref="GI:16766272" /db_xref="GeneID:1254490" /translation="MDELTAQALKAFTTRYCDAWQEKHGSWPLSEELYGVPSPCIISS TRDAVYWQPQPFEGEENVNAVERAFDIMVQPALHAFYTTQFAGDMPAQFADEKLTLLQ TWSQDDFRRVQENLIGHLVTQKRLKLPPTLFIATQENELEVISVCNLSGEVIKETLGT RNRTVLAATLAEFLTQLNPLL" regulatory complement(3117823..3117828) /regulatory_class="ribosome_binding_site" /gene="syd" /locus_tag="STM2967" /note="putative RBS for syd; RegulonDB:STMS1H003019" gene 3117868..3118736 /gene="yqcD" /locus_tag="STM2968" /db_xref="GeneID:1254491" regulatory 3117868..3117873 /regulatory_class="ribosome_binding_site" /gene="yqcD" /locus_tag="STM2968" /note="putative RBS for yqcD; RegulonDB:STMS1H003020" CDS 3117888..3118736 /gene="yqcD" /locus_tag="STM2968" /note="similar to E. coli orf, hypothetical protein (AAC75836.1); Blastp hit to AAC75836.1 (282 aa), 87% identity in aa 1 - 282" /codon_start=1 /transl_table=11 /product="NADPH-dependent 7-cyano-7-deazaguanine reductase QueF" /protein_id="NP_461888.1" /db_xref="GI:16766273" /db_xref="GeneID:1254491" /translation="MSSYENHQALDGLTLGKSTDYRDNYDVSLLQGVPRSLNRDPLGL TADNLPFHGADIWTLYELSWLNSQGLPQVAVGHVELDYTSVNLIESKSFKLYLNSFNQ TRFDTWETVRQTLERDLRACAQGNVSVRLHRLDELEGQPVAHFHGTCIDDQDISIDNY QFTTDYLQHAVSGEKQVEETLVSHLLKSNCLITHQPDWGSIQIQYRGRKIDREKLLRY LVSFRHHNEFHEQCVERIFNDILRFCQPETLSVYARYTRRGGLDINPWRSNTDFVPAT GRLARQ" gene 3118838..3120213 /gene="ygdH" /locus_tag="STM2969" /db_xref="GeneID:1254492" regulatory 3118838..3118843 /regulatory_class="ribosome_binding_site" /gene="ygdH" /locus_tag="STM2969" /note="putative RBS for ygdH; RegulonDB:STMS1H003021" CDS 3118849..3120213 /gene="ygdH" /locus_tag="STM2969" /note="similar to E. coli orf, hypothetical protein (AAC75837.1); Blastp hit to AAC75837.1 (454 aa), 94% identity in aa 1 - 453" /codon_start=1 /transl_table=11 /product="LOG family protein" /protein_id="NP_461889.1" /db_xref="GI:16766274" /db_xref="GeneID:1254492" /translation="MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNS GSLTDNSKELLSRFENFDINVLRRERGVKLELINPPEDAFVDGRIIRALQANLFAVLR DILFVNGQIHNAGRFQHLDLESSTHITNLVFSILRNARALHVGEAPNMVVCWGGHSIN ENEYLYARRVGTQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPS IIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPA NKNQVLPLILTGPKESADYFRVLDEFITHTLGEAARRHYRIIIDDAAEVARLMKKAMP QVKENRRDTGDAYSFNWSMRIAPDLQVPFEPSHENMANLKLYPDQPVEILAADLRRAF SGIVAGNVKEVGIRAIEANGPYKIHGDREMMRRMDDLLQGFVAQHRMKLPGSAYIPCY EICA" gene 3120766..3122067 /gene="sdaC" /locus_tag="STM2970" /db_xref="GeneID:1254493" regulatory 3120766..3120771 /regulatory_class="ribosome_binding_site" /gene="sdaC" /locus_tag="STM2970" /note="putative RBS for sdaC; RegulonDB:STMS1H003022" CDS 3120778..3122067 /gene="sdaC" /locus_tag="STM2970" /note="similar to E. coli probable serine transporter (AAC75838.1); Blastp hit to AAC75838.1 (429 aa), 95% identity in aa 1 - 429" /codon_start=1 /transl_table=11 /product="HAAAP family serine/threonine permease" /protein_id="NP_461890.1" /db_xref="GI:16766275" /db_xref="GeneID:1254493" /translation="METTQTSTIASIDSRSAWRKTDTMWMLGLYGTAIGAGVLFLPIN AGVGGMIPLIIMAILAFPMTFFAHRGLTRFVLSGKNPGEDITEVVEEHFGIGAGKLIT LLYFFAIYPILLVYSVAITNTVESFLTHQLAINPPPRAILSLILIVGMMTIVRFGEQM IVKAMSILVFPFVAALMLLALYLIPQWNGAALETLSFDSAASTGNGLWMTLWLAIPVM VFSFNHSPIISSFAVAKREEYGEGAEKKCSKILAFAHIMMVLTVMFFVFSCVLSLTPA DLAAAKEQNISILSYLANHFNAPIIAWMAPIIAMIAITKSFLGHYLGAREGFNGMVIK SLRGKGKSIEINKLNKITALFMLVTTWIVATLNPSILGMIETLGGPIIAMILFLMPMY AIQKVPAMRKYSGHISNVFVVIMGLIAISAIFYSLFS" gene 3122115..3123493 /gene="sdaB" /locus_tag="STM2971" /db_xref="GeneID:1254494" regulatory 3122115..3122120 /regulatory_class="ribosome_binding_site" /gene="sdaB" /locus_tag="STM2971" /note="putative RBS for sdaB; RegulonDB:STMS1H003023" CDS 3122126..3123493 /gene="sdaB" /locus_tag="STM2971" /EC_number="4.3.1.17" /note="similar to E. coli L-serine dehydratase (deaminase), L-SD2 (AAC75839.1); Blastp hit to AAC75839.1 (455 aa), 94% identity in aa 1 - 455" /codon_start=1 /transl_table=11 /product="L-serine ammonia-lyase" /protein_id="NP_461891.2" /db_xref="GI:1109557726" /db_xref="GeneID:1254494" /translation="MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARHILTDVTR VVVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDAIPSFIQDVNTHGRLLLANGQ HEVEFPVDKCMNFHADNLSLHENGMRITALAGDKVLYSQTYYSIGGGFIVDEEHFGLT NSEPVNVPYPYKTAADLQRHCQETGLSLSGLMMQNELALHSKEALEQHFARVWEVMRS GIERGITTEGVLPGKLRVPRRAAALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENA AGGRVVTAPTNGACGIVPAVLAYYDKFIREVNANSLARYMLVASAIGSLYKMNASISG AEVGCQGEVGVACSMAAAGLAELLGGSPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPC IERNAIASVKAVNAARMALRRTSEPRVCLDKVIETMYETGKDMNAKYRETSRGGLAMK IVTCD" gene 3123584..3124419 /gene="exo" /locus_tag="STM2972" /db_xref="GeneID:1254495" regulatory 3123584..3123589 /regulatory_class="ribosome_binding_site" /gene="exo" /locus_tag="STM2972" /note="putative RBS for exo; RegulonDB:STMS1H003024" CDS 3123604..3124419 /gene="exo" /locus_tag="STM2972" /EC_number="3.1.11.-" /note="similar to E. coli 5'-3' exonuclease (AAC75840.1); Blastp hit to AAC75840.1 (281 aa), 87% identity in aa 18 - 281" /codon_start=1 /transl_table=11 /product="exonuclease IX, 5'-3' exonuclease" /protein_id="NP_461892.3" /db_xref="GI:1109557727" /db_xref="GeneID:1254495" /translation="MLASPRRECYPTRRFVRENTVAAHLLIVDALNLIRRIHAVQGSP CVETCQHALDQLIIHSQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMP ALRAAFEQRGVRCWASDGNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRI RDYFQKRWLDAPFIEKEFGVLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLIQFQ NLEGIYAHLDEVPEKWRKKLETHKEMAFLCRDIARLQTDLHIDGNLQQLRLAR" gene complement(3124511..3125672) /gene="fucO" /locus_tag="STM2973" /db_xref="GeneID:1254496" CDS complement(3124511..3125659) /gene="fucO" /locus_tag="STM2973" /EC_number="1.1.1.77" /note="similar to E. coli L-1,2-propanediol oxidoreductase (AAC75841.1); Blastp hit to AAC75841.1 (383 aa), 91% identity in aa 2 - 383" /codon_start=1 /transl_table=11 /product="lactaldehyde reductase" /protein_id="NP_461893.1" /db_xref="GI:16766278" /db_xref="GeneID:1254496" /translation="MANRMILNETAWFGRGAVDALTDEVTRRGYHKALIVTDKTLVQC GVVDKVTSRMDAAGLAWEIYAGVIPNPTISVVQEGLKVFTQSGADYLIAIGGGSPQDT CKAIGIISNNPEFADVRSLEGLSPTRKPSVPIMAIPTTAGTAAEVTINYVITDEEKRR KFVCVDPHDIPQAAFIDADMMDGMPPALKAATGVDALTHAIEGYITRAAWALTDALHI KAIEIIAGALRGAVAGEKEAGEAMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYNTPH GVANAILLPHVMRFNAGSTNEKFRDIARAMGVKVEGLSLEEARNAAVEAVFTLNRDVG IPLHLRDVGVRKEDIPALAQAAFDDVCTGGNPREASLADIVELYHTAW" regulatory complement(3125667..3125672) /regulatory_class="ribosome_binding_site" /gene="fucO" /locus_tag="STM2973" /note="putative RBS for fucO; RegulonDB:STMS1H003025" gene complement(3125676..3126333) /gene="fucA" /locus_tag="STM2974" /db_xref="GeneID:1254497" CDS complement(3125676..3126323) /gene="fucA" /locus_tag="STM2974" /EC_number="4.1.2.17" /note="similar to E. coli L-fuculose-1-phosphate aldolase (AAC75842.1); Blastp hit to AAC75842.1 (215 aa), 91% identity in aa 1 - 215" /codon_start=1 /transl_table=11 /product="L-fuculose phosphate aldolase" /protein_id="NP_461894.1" /db_xref="GI:16766279" /db_xref="GeneID:1254497" /translation="MERNRLARQIIDTCLEMTRLGLNQGTAGNVSVRYQGGLLITPTG IPYEKLTESHIVFIDADGQHEQGKLPSSEWRFHMAAYQTRPDANAVVHNHAVHCTAVS ILNRPIPAIHYMIAAAGGNSIPCAPYATFGTRELSDHVAVALKNRKATLLQHHGLIAC EENLDKALWLAHEVEVLAQLYLSTLAIVDPVPVLDDEAIAIVLEKFKTYGLRIEE" regulatory complement(3126328..3126333) /regulatory_class="ribosome_binding_site" /gene="fucA" /locus_tag="STM2974" /note="putative RBS for fucA; RegulonDB:STMS1H003026" regulatory 3126682..3126690 /regulatory_class="minus_35_signal" /note="putative -35_signal for fucP; RegulonDB:STMLTH004569" regulatory 3126706..3126714 /regulatory_class="minus_10_signal" /note="putative -10_signal for fucP; RegulonDB:STMLTH004569" gene 3126878..3128194 /gene="fucP" /locus_tag="STM2975" /note="pseudogene; frameshift; fucose permease" /pseudo /db_xref="GeneID:1254498" gene 3128214..3130001 /gene="fucI" /locus_tag="STM2976" /db_xref="GeneID:1254499" regulatory 3128214..3128219 /regulatory_class="ribosome_binding_site" /gene="fucI" /locus_tag="STM2976" /note="putative RBS for fucI; RegulonDB:STMS1H003028" CDS 3128226..3130001 /gene="fucI" /locus_tag="STM2976" /EC_number="5.3.1.-" /note="similar to E. coli L-fucose isomerase (AAC75844.1); Blastp hit to AAC75844.1 (591 aa), 93% identity in aa 1 - 591" /codon_start=1 /transl_table=11 /product="L-fucose isomerase" /protein_id="NP_461895.1" /db_xref="GI:16766280" /db_xref="GeneID:1254499" /translation="MKKISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALITEK IRHACGAQVECVIADTCIAGMAESAACEEKFSSQNVGVTITVTPCWCYGSETIDMDPM RPKAIWGFNGTERPGAVYLAAALAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLL RFARAGLAVASMKGKSYLSVGGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRID QKIYDEAELEMALAWADKNFRYGEDQNASQYKRNEAQNRAVLKESLLMAMCIRDMMQG NKTLADKGLVEESLGYNAIAAGFQGQRHWTDQYPNGDTAEALLNSSFDWNGVREPFVV ATENDSLNGVAMLFGHQLTGTAQIFADVRTYWSPEAVERVTGQALSGLAEHGIIHLIN SGSAALDGACKQRDSEGKPTMKPHWEISQQEADACLAATEWCPAIHEYFRGGGYSSRF LTEGGVPFTMTRVNIIKGLGPVLQIAEGWSVELPKAMHDQLDARTNSTWPTTWFAPRL TGKGPFTDVYSVMANWGANHGVLTIGHVGADFITLAAMLRIPVCMHNVEEAKIYRPSA WAAHGMDIEGQDYRACQNYGPLYKR" gene 3130090..3131520 /gene="fucK" /locus_tag="STM2977" /db_xref="GeneID:1254500" regulatory 3130090..3130095 /regulatory_class="ribosome_binding_site" /gene="fucK" /locus_tag="STM2977" /note="putative RBS for fucK; RegulonDB:STMS1H003029" CDS 3130102..3131520 /gene="fucK" /locus_tag="STM2977" /EC_number="2.7.1.51" /note="similar to E. coli L-fuculokinase (AAC75845.1); Blastp hit to AAC75845.1 (482 aa), 84% identity in aa 11 - 482" /codon_start=1 /transl_table=11 /product="L-fuculokinase" /protein_id="NP_461896.1" /db_xref="GI:16766281" /db_xref="GeneID:1254500" /translation="MKQDVILVLDCGATNVRAIAVDRQGKIVARASTANASDIAAENS AWHQWSLDAILQRFADCCRSLSSALSECVVRGITVTTFGVDGALVDAQGKLLYPVISW KCPRTAAVMETIERFISPRQLQTLSGVGAFSFNTLYKLVWLKENHPRLLEQAHCWLFI SSLINHRLTGEFTTDITMAGTSQLLDIHQRDFSPEILQATGLARRLFPRIVEAGAPIG TLQTDAARLLGLPAGVPVISAGHDTQFALFGAGAQQGEPVLSSGTWEILMVRSGQVDT SLLSQYPGSTCELDSQSGLYNPGMQWLASGVLEWVRKLLWTPETPWQTLIDEARAIPA GAEGVRMQCDLLACQNAGWQGVTLNTTRGHFYRAALEGLTAQLQRNLRTLEKIGHFNA TELLLVGGGSRNALWNQIKANQLDIPIKVLDDAETTVAGAAMFGWYGVGEFSSPEQAR AQVNYQYRYFWPQTEPEIIEGV" gene 3131509..3131944 /gene="fucU" /locus_tag="STM2978" /db_xref="GeneID:1254501" regulatory 3131509..3131514 /regulatory_class="ribosome_binding_site" /gene="fucU" /locus_tag="STM2978" /note="putative RBS for fucU; RegulonDB:STMS1H003030" CDS 3131522..3131944 /gene="fucU" /locus_tag="STM2978" /note="similar to E. coli protein of fucose operon (AAC75846.1); Blastp hit to AAC75846.1 (140 aa), 91% identity in aa 1 - 140" /codon_start=1 /transl_table=11 /product="L-fucose mutarotase" /protein_id="NP_461897.1" /db_xref="GI:16766282" /db_xref="GeneID:1254501" /translation="MLKTISPLISPTLLKVLAEMGHGDEIIFSDAHFPAHSLGPQVIR ADGLSVSDLLRAIIPLFELDSYAPPLVMMAAVEGDTLDPNVEARYRDALSLEAPCPDI VRIDRYAFYERAQKAFAIVITGECAKYGNILLKKGVTP" gene 3131988..3132712 /gene="fucR" /locus_tag="STM2979" /db_xref="GeneID:1254502" regulatory 3131988..3131993 /regulatory_class="ribosome_binding_site" /gene="fucR" /locus_tag="STM2979" /note="putative RBS for fucR; RegulonDB:STMS1H003031" CDS 3132002..3132712 /gene="fucR" /locus_tag="STM2979" /note="DeoR family; similar to E. coli positive regulator of the fuc operon (AAC75847.1); Blastp hit to AAC75847.1 (243 aa), 88% identity in aa 1 - 235" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_461898.1" /db_xref="GI:16766283" /db_xref="GeneID:1254502" /translation="MKAARQQAIVDLLINHKSLTTEALATRLNVSKETIRRDLSELQT QGKVLRNHGRAKYIHRENQDSGDPFHIRLKSHYAHKADIAREALAWIEEGMTIALDAS STCWYLARQLPDIPIQVFTNSHPICQELGKRERIALISSGGQLERKYGCYVNPSLISQ LKSLDIDLFIFSCEGIDGGGDLWDSNAINADFKSILLRRASQSLLLIDKSKFNRSGEA RIGHLDDVTHIVSDAPQS" gene complement(3132771..3133884) /gene="ygdE" /locus_tag="STM2980" /db_xref="GeneID:1254503" CDS complement(3132771..3133871) /gene="ygdE" /locus_tag="STM2980" /note="similar to E. coli orf, hypothetical protein (AAC75848.1); Blastp hit to AAC75848.1 (366 aa), 94% identity in aa 1 - 366" /codon_start=1 /transl_table=11 /product="23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM" /protein_id="NP_461899.1" /db_xref="GI:16766284" /db_xref="GeneID:1254503" /translation="MNKVVLLCRPGFEKECAAEITDKAGKREIFGFARVKENAGYVIY ECYQPEDGEKLISELPFSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGE LRVEVADTNESKELMKFCRKFTVPLRAALRDAGVLTNYETPKRPVVHVFFIAPGCCYT GYSFAHNNSPFYMGIPRLKFPSDAPSRSTLKLEEALHVFIPEDEWDERLANGMYAVDL GACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFRYRPNRNNISWMVC DMVEKPAKVTALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYLQAQLDEHGVNA QIQARQLYHDREEVTVHVRRLWAAVGGRRDER" gene complement(3133864..3134271) /gene="ygdD" /locus_tag="STM2981" /db_xref="GeneID:1254504" CDS complement(3133864..3134259) /gene="ygdD" /locus_tag="STM2981" /note="similar to E. coli orf, hypothetical protein (AAC75849.1); Blastp hit to AAC75849.1 (131 aa), 90% identity in aa 1 - 131" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461900.1" /db_xref="GI:16766285" /db_xref="GeneID:1254504" /translation="MTSRFMLIVAAISGFIYVALGAFGAHVLSKTLGVVEMGWIQTGL QYQAFHTLAIFGLAVAMQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAYIT PVGGVSFLVGWALLLIGAIRMKRKGASHE" regulatory complement(3133879..3133884) /regulatory_class="ribosome_binding_site" /gene="ygdD" /locus_tag="STM2981" /note="putative RBS for ygdE; RegulonDB:STMS1H003032" regulatory complement(3134266..3134271) /regulatory_class="ribosome_binding_site" /gene="ygdD" /locus_tag="STM2981" /note="putative RBS for ygdD; RegulonDB:STMS1H003033" gene complement(3134278..3135307) /gene="gcvA" /locus_tag="STM2982" /db_xref="GeneID:1254505" CDS complement(3134278..3135195) /gene="gcvA" /locus_tag="STM2982" /note="LysR family; similar to E. coli positive regulator of gcv operon (AAC75850.1); Blastp hit to AAC75850.1 (305 aa), 98% identity in aa 1 - 305" /codon_start=1 /transl_table=11 /product="transcriptional regulator GcvA" /protein_id="NP_461901.1" /db_xref="GI:16766286" /db_xref="GeneID:1254505" /translation="MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSL EDFLGLKLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLPP SFAIQWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKL YAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDASRRDWQAYTRQLGLNHINVQQGP IFSHSAMVLQAAIHGQGIALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQA ELGKIAAFRQWILAKAATEQEKFRFRYEQ" regulatory complement(3135196..3135201) /regulatory_class="ribosome_binding_site" /gene="gcvA" /locus_tag="STM2982" /note="putative RBS for gcvA; RegulonDB:STMS1H003034" protein_bind complement(3135264..3135294) /gene="gcvA" /locus_tag="STM2982" /note="putative binding site for GcvA, RegulonDB: STMS1H000198" /bound_moiety="GcvA" regulatory complement(3135280..3135288) /regulatory_class="minus_10_signal" /gene="gcvA" /locus_tag="STM2982" /note="putative -10_signal for gcvA; RegulonDB:STMLTH004570" regulatory complement(3135299..3135307) /regulatory_class="minus_35_signal" /gene="gcvA" /locus_tag="STM2982" /note="putative -35_signal for gcvA; RegulonDB:STMLTH004570" gene complement(3135542..3135781) /gene="ygdI" /locus_tag="STM2983" /db_xref="GeneID:1254506" CDS complement(3135542..3135769) /gene="ygdI" /locus_tag="STM2983" /note="similar to E. coli orf, hypothetical protein (AAC75851.1); Blastp hit to AAC75851.1 (76 aa), 93% identity in aa 2 - 75" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461902.1" /db_xref="GI:16766287" /db_xref="GeneID:1254506" /translation="MKKTAAIISACMLTFALSACSGPNYVMHTNDGRSIVTDGKPQTD NDTGMISYKDANGNKQQINRTDVKEMVALEN" regulatory complement(3135776..3135781) /regulatory_class="ribosome_binding_site" /gene="ygdI" /locus_tag="STM2983" /note="putative RBS for ygdI; RegulonDB:STMS1H003035" gene 3135952..3137167 /gene="csdA" /locus_tag="STM2984" /db_xref="GeneID:1254507" regulatory 3135952..3135957 /regulatory_class="ribosome_binding_site" /gene="csdA" /locus_tag="STM2984" /note="putative RBS for csdA; RegulonDB:STMS1H003036" CDS 3135962..3137167 /gene="csdA" /locus_tag="STM2984" /note="similar to E. coli orf, hypothetical protein (AAC75852.1); Blastp hit to AAC75852.1 (401 aa), 89% identity in aa 1 - 401" /codon_start=1 /transl_table=11 /product="cysteine sulfinate desulfinase" /protein_id="NP_461903.1" /db_xref="GI:16766288" /db_xref="GeneID:1254507" /translation="MNAFNPTQFRAQFPALADAGVYLDSAATALKPQAVIDATHQFYC LSAGNVHRSQFAQAQRLTAQYEAARAKAARLLNAPDEKSIVWTRGTTEAINMVAQCYA RPRLRPGDEIIVSVAEHHANLVPWLMVAQQTGAQVIKLPLNDRRLPDVERLPELITSR SRILALGQMSNVTGGCPDLASAISAAHAAGMVVMVDGAQGAVHFPADVQQLDIDFYAF SAHKLYGPTGIGVLYGKPELLEAMSPWLGGGKMIRDVSFEGFTTQSAPWKLEAGTPNV AGVIGLSAALEWLSDIDIEQAENWSRGLATLAEDALAKRPGFRSFRCQDSSLLAFDFV GVHHGDMVTLLAEYGIALRAGQHCAQPLLAELGVTGTLRASFAPYNTQHDVDALVNAV DRALELLVD" gene 3137147..3137610 /gene="ygdK" /locus_tag="STM2985" /db_xref="GeneID:1254508" regulatory 3137147..3137152 /regulatory_class="ribosome_binding_site" /gene="ygdK" /locus_tag="STM2985" /note="putative RBS for ygdK; RegulonDB:STMS1H003037" CDS 3137167..3137610 /gene="ygdK" /locus_tag="STM2985" /note="similar to E. coli orf, hypothetical protein (AAC75853.1); Blastp hit to AAC75853.1 (147 aa), 88% identity in aa 1 - 144" /codon_start=1 /transl_table=11 /product="cysteine desulfurase sulfur acceptor subunit CsdE" /protein_id="NP_461904.1" /db_xref="GI:16766289" /db_xref="GeneID:1254508" /translation="MTNPLYTGHPFGTTVTEETLRAIFLPLTQWEDKYRQLILLGKQL PALPDECKAQAKEIAGCENRVWLGFTRSDNGTMHFFGDSEGRIVRGLLAVLLTAVEGK NAAELQARSPLALFDELGLRAQLSASRSQGLNALSEAIVAATHKG" gene 3137905..3138797 /locus_tag="STM2986" /db_xref="GeneID:1254509" regulatory 3137905..3137910 /regulatory_class="ribosome_binding_site" /locus_tag="STM2986" /note="putative RBS for STM2986; RegulonDB:STMS1H003038" CDS 3137910..3138797 /locus_tag="STM2986" /note="similar to E. coli orf, hypothetical protein (AAC76822.1); Blastp hit to AAC76822.1 (300 aa), 31% identity in aa 25 - 294" /codon_start=1 /transl_table=11 /product="putative integral membrane protein" /protein_id="NP_461905.3" /db_xref="GI:1109557728" /db_xref="GeneID:1254509" /translation="MFVVLAFILWGLTPLYYQYLSGGNLAQILIYRVFWSIPLLLAVR LLFRQRTRFHDAWKDKKSFFFCMIAGLLMIVSWSSFIYALTHHLVLDASLGYFINPLF VIALGCIFLKEKLSLFQAIAVFSGVCGLTFQIIMLRHFPALALTMGLSFALYGLARKF IHYDVMTSITIETLWALPVSLLIFLFSDTGPIISANTPFFLYVMTAPVTIIPLVLFAI ALNHTSLIVTGLAQYIEPSLQFLLAIMIFGEHINYAELLCFCAVWFGLFLCISENLYS HYLRARLKPVFGRVQRFFR" gene complement(3138849..3139663) /gene="ygdL" /locus_tag="STM2987" /db_xref="GeneID:1254510" CDS complement(3138849..3139655) /gene="ygdL" /locus_tag="STM2987" /note="similar to E. coli putative enzyme (AAC75854.1); Blastp hit to AAC75854.1 (268 aa), 93% identity in aa 1 - 267" /codon_start=1 /transl_table=11 /product="tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA" /protein_id="NP_461906.1" /db_xref="GI:16766291" /db_xref="GeneID:1254510" /translation="MSVVISDAWRQRFGGTARLYGEKALQRFAEAHICVVGIGGVGSW AAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRV TVIDDFITPDNVAGYMNAGFTYVIDAIDSVRPKAALIAYCRRYKVPLVTTGGAGGQID PTQIQVADLAKTIQDPLAAKLRERLKHNFGVVKNSKGKLGVDCVFSTEALVYPQADGS VCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKIMAKAARQE" regulatory complement(3139658..3139663) /regulatory_class="ribosome_binding_site" /gene="ygdL" /locus_tag="STM2987" /note="putative RBS for ygdL; RegulonDB:STMS1H003039" gene complement(3139765..3140878) /gene="mltA" /locus_tag="STM2988" /db_xref="GeneID:1254511" CDS complement(3139765..3140862) /gene="mltA" /locus_tag="STM2988" /EC_number="3.2.1.-" /note="similar to E. coli membrane-bound lytic murein transglycosylase A (AAC75855.1); Blastp hit to AAC75855.1 (365 aa), 92% identity in aa 1 - 365" /codon_start=1 /transl_table=11 /product="murein transglycosylase A" /protein_id="NP_461907.1" /db_xref="GI:16766292" /db_xref="GeneID:1254511" /translation="MKGRWAKYVATGVMLAMLAACSSKPTDRGQQYKDGKFTQPFSLV NQPDAVGAPINAGDFAEQVNQIRSASPRLYTNQSNVYNAVQNWLRSGGDTRTMRQFGI DAWQMEGTDNYGNVQFTGYYTPVVQARHTRQGAFQYPIYSMPPKRGRLPSRAQIYAGA LSDKYILAWSNSLMDNFIMDVQGSGYIDFGDGSPLNFFSYAGKNGWPYRSIGKVLIDR GEVKKEDMSMQAIREWGEKHSEAEVRELLEQNPSFVFFKPQSFAPVKGASAVPLIGRA SVASDRSIIPPGTTLLAEVPLLDNNGKFSGQYELRLMVALDVGGAIKGQHFDIYQGIG PDAGHRAGWYNHYGRVWVLKSAPGAGNVFSG" regulatory complement(3140873..3140878) /regulatory_class="ribosome_binding_site" /gene="mltA" /locus_tag="STM2988" /note="putative RBS for mltA; RegulonDB:STMS1H003040" gene 3141070..3141143 /gene="metZ" /locus_tag="STM2989" /db_xref="GeneID:1254512" tRNA 3141070..3141143 /gene="metZ" /locus_tag="STM2989" /product="tRNA-Met" /db_xref="GeneID:1254512" gene 3141176..3141249 /gene="metW" /locus_tag="STM2990" /db_xref="GeneID:1254513" tRNA 3141176..3141249 /gene="metW" /locus_tag="STM2990" /product="tRNA-Met" /db_xref="GeneID:1254513" gene complement(3141362..3142622) /gene="amiC" /locus_tag="STM2991" /db_xref="GeneID:1254514" CDS complement(3141362..3142615) /gene="amiC" /locus_tag="STM2991" /EC_number="3.5.1.28" /note="similar to E. coli putative amidase (AAC75856.1); Blastp hit to AAC75856.1 (447 aa), 94% identity in aa 31 - 446" /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-L-alanine amidase" /protein_id="NP_461908.1" /db_xref="GI:16766293" /db_xref="GeneID:1254514" /translation="MSGANSAISRRRLLQGAGAMWLLSVSQVGLAAVSQVVAVRIWPA SSYTRVTVESNRLLKYKQFALSNPDRVVVDIEDVNLNSVLKGIGAQIRSDDPYIKSAR VGQFDPKTVRMVFELKQNVKPQLFALAPVAGFKERLVMDLYPANAQDMQDPLLALLED YNKGDLDKQVPPSQSGPQPGKAGRDRPIVIMLDPGHGGEDPGAIGKYKTREKDVVLQI ARRLRALIEKEGNMKVYMTRNEDIFIPLKVRVAKAQKQRADLFVSIHADAFTSRQPSG SSVFALSTKGATSTAAKYLAQTQNASDLIGGVSKSGDRYVDHTMFDMVQSLTIADSLK FGKAVLKQLGKINDLHKNKVEQAGFAVLKAPDIPSILVETAFISNIEEERKLKTATFQ QQVAESILAGIKAYFADGATLARRS" regulatory complement(3142617..3142622) /regulatory_class="ribosome_binding_site" /gene="amiC" /locus_tag="STM2991" /note="putative RBS for amiC; RegulonDB:STMS1H003041" gene 3142836..3144179 /gene="argA" /locus_tag="STM2992" /db_xref="GeneID:1254515" regulatory 3142836..3142841 /regulatory_class="ribosome_binding_site" /gene="argA" /locus_tag="STM2992" /note="putative RBS for argA; RegulonDB:STMS1H003042" CDS 3142848..3144179 /gene="argA" /locus_tag="STM2992" /EC_number="2.3.1.1" /note="amino-acid acetyltransferase; similar to E. coli N-acetylglutamate synthase; amino acid acetyltransferase (AAC75857.1); Blastp hit to AAC75857.1 (443 aa), 93% identity in aa 1 - 443" /codon_start=1 /transl_table=11 /product="amino-acid N-acetyltransferase" /protein_id="NP_461909.1" /db_xref="GI:16766294" /db_xref="GeneID:1254515" /translation="MIKERKTELVEGFRHSVPYINTHRGKTFVIMLGGEAIEHDNFSS IVSDIGLLHSLGIRLVVVYGARPQIDANLAAHHHEPIYHKNTRVTDAKALELVKQAAG LLQLDITARLSMSLNNTPLQGAHINVVSGNFTIAQPLGVDDGVDYCHSGRIRRIDEDA INRQLDNGAIVLMGPVAVSVTGESFNLTSEEIATQLAVKLKAEKMIGFCSSQGVTNSE GGIISELFPNEAQARVEELEAQGDYNSGTVRFLRGAVKACRSGVRRCHLISYQEDGSL LQELFSRDGIGTQIVMESAEQIRRATINDIGGILELIRPLEQQGILVRRSREQLEMEI DKFTIIQRDNMTIACAALYPFVEEKIGEMACVAVHPDYRSSSRGEVLLERVAAQARQM GLRKLFVLTTRSIHWFQERGFTPVDIELLPESKKKMYNYQRRSKVLMADLG" gene complement(3144282..3146128) /gene="recD" /locus_tag="STM2993" /db_xref="GeneID:1254516" CDS complement(3144282..3146117) /gene="recD" /locus_tag="STM2993" /EC_number="3.1.11.5" /note="similar to E. coli DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease (AAC75858.1); Blastp hit to AAC75858.1 (608 aa), 84% identity in aa 1 - 604" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease V subunit alpha" /protein_id="NP_461910.1" /db_xref="GI:16766295" /db_xref="GeneID:1254516" /translation="MTIQERLLEAVEQKLLRPIDAQFALTVAGNDDPAVTLAAALLSH DAGEGHVCLPLSRLTLTEEAHPLLVACISETATPIDWKKRLLASAAVSCGDSPAPLIL CGERLYLNRMWCNERTVARFFNEVNQAIAVDEDQLSRILDALFPPTDEVNWQKVAAAV ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGA ALRQLPLTDAQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL PMMSRLIDSLPPHGRVIFLGDRDQLASVEAGAVLGDICAYVNAGFTAERARQLSRLTG SAIPAGAGTQAASLRDSLCLLQKSYRFGSDSGIGKLAAAINCGDRSAIQAVFQQGFSD IEKRTLQSSDDYAGMLDEALAGYGRYLRLLHEKATPEAILQAFNEYQLLCALREGPFG VRGLNDRIEQAMVQQRKIQRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGL RVWFVMPDGTIKSVQPSRLPEHDTTWAMTVHKSQGSEFDHAALILPSQRSPVVTRELV YTAVTRARRRLSLYADERILAGAIVTRTERRSGLATLFDEVSRTG" gene complement(3146114..3149659) /gene="recB" /locus_tag="STM2994" /db_xref="GeneID:1254517" CDS complement(3146114..3149659) /gene="recB" /locus_tag="STM2994" /EC_number="3.1.11.5" /note="similar to E. coli DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease (AAC75859.1); Blastp hit to AAC75859.1 (1180 aa), 84% identity in aa 1 - 1180" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease V subunit beta" /protein_id="NP_461911.1" /db_xref="GI:16766296" /db_xref="GeneID:1254517" /translation="MNDVAETLDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGL GGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSNIHELRIACLRESTDNPLYARLLE EISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESLLR YQACADFWRRHCYPLPRDIAQVVFDVWKGPKALLKDIDRYLQGEAPVIKAPPSQEETL ASRHEQILARINQVKQQWCEAVSELDALIESSGIDRRKFNRGNQAKWIEKITAWAQEE TKNYQLPEALGKFSQRFLAERTKAGGVTPQHPLFVAIDNLLGEPLSIKDLVLTRALSE IRETVAQEKRRRGELGFDDMLSRLDTALRSESGEALAAAIRTRFPVAMIDEFQDTDPQ QYRIFRRIWRHQPDTALLLIGDPKQAIYAFRGADIFTYMKARSEVSAHYTLDTNWRSA PGMVNSVNKLFSQMNDAFMFRDIPFSPVKFAPRNQSLQFKVNDAPQPAMTLWLMEGES CGSGDYQSYMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAAL IRDALTLLAIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLT ALDIETLNNDENAWDAVVEEFDGYRQIWHKRGVMPMLRALMSARNIAENLLATAGGER RLTDILHISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQIVT IHKSKGLEYPLVWLPFITHFRVQDQAFYHDRHSYEAVLDLSHAEESIALAEAERLAED LRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQKGEPMDAAGLRAC IEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARALQRLLYDSWRVTSYSGLQQRGH SVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDFTQPINPQW VQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFYLPIAQP LTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSNWLGE DSAAYTQTAMAAAMQAHRYDLQYQLYTLALHRYLRHRMTNYDYERHFGGVIYLFLRGV DGERPQQGIFTTRPAAALINQLDDMFAGEMSEEAQ" regulatory complement(3146123..3146128) /regulatory_class="ribosome_binding_site" /gene="recD" /locus_tag="STM2993" /note="putative RBS for recD; RegulonDB:STMS1H003043" gene complement(3149652..3152551) /gene="ptr" /locus_tag="STM2995" /db_xref="GeneID:1254518" CDS complement(3149652..3152540) /gene="ptr" /locus_tag="STM2995" /EC_number="3.4.24.55" /note="similar to E. coli protease III (AAC75860.1); Blastp hit to AAC75860.1 (962 aa), 88% identity in aa 1 - 962" /codon_start=1 /transl_table=11 /product="pitrilysin" /protein_id="NP_461912.1" /db_xref="GI:16766297" /db_xref="GeneID:1254518" /translation="MPRSTWFKALLLLVALWGPAVQADIGWQPLQETIRKSDKDTRQY QAIRLDNDMVVLLVSDPQAVKSLSALVVPVGSLEDPEAHQGLAHYLEHMCLMGSKKYP QADSLAEYLKRHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAAPLLNKKYAE RERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSHFSGGNLETLSDKPGNPVQQAL IAFHEKYYSSNLMKAVIYSNKPLPELASIAAATYGRVPNKQIKKPEITVPVITEAQKG IIIHYVPALPRKVLRVEFRIDNNSAQFRSKTDELVSYLIGNRSPGTLSDWLQKQGLVE GISADSDPIVNGNSGVFAISATLTDKGLANRDEVVAAIFSYLNMLREKGIDKRYFDEL AHVLDLDFRYPSITRDMDYVEWLADTMIRVPVAHTLDAANIADRYDPAAIKNRLAMMT PQNARIWYISPQEPHNKTAYFVDAPYQVDKISEQTFKNWQQKAQGIALSLPELNPYIP DDFTLVKNDKNYVRPELIVDKADLRVVYAPSRYFASEPKADVSVVLRNPQAMDSARNQ VLFALNDYLAGMALDQLSNQAAVGGISFSTNANNGLMVTANGYTQRLPQLFLALLEGY FSYDATEEQLAQAKSWYTQMMDSAEKGKAYEQAIMPVQMISQVPYFSRDERRALLPSI TLKEVMAYRNALKTGARPEFLVIGNMSEAQATSLAQDVQKQLAANGSAWCRNKDVVVE KKQSVIFEKAGSSTDSALAAVFVPVGYDEYVSAAYSAMLGQIVQPWFYNQLRTEEQLG YAVFAFPMSVGRQWGMGFLLQSNDKQPSYLWQRYQAFFPDAEAKLRAMKPEEFAQIQQ AIITQMRQAPQTLGEEASRLSKDFDRGNMRFDSRDKIIAQIKLLTPQKLADFFHQAVV EPQGMAILSQIAGSQNGKAEYVHPTGWKVWDNVSALQQTLPLMSEKNE" regulatory complement(3152546..3152551) /regulatory_class="ribosome_binding_site" /gene="ptr" /locus_tag="STM2995" /note="putative RBS for ptr; RegulonDB:STMS1H003044" gene complement(3152718..3156100) /gene="recC" /locus_tag="STM2996" /db_xref="GeneID:1254519" CDS complement(3152718..3156089) /gene="recC" /locus_tag="STM2996" /EC_number="3.1.11.5" /note="similar to E. coli DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease (AAC75861.1); Blastp hit to AAC75861.1 (1122 aa), 88% identity in aa 1 - 1122" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease V subunit gamma" /protein_id="NP_461913.2" /db_xref="GI:1109557729" /db_xref="GeneID:1254519" /translation="MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQ WLQMTLSQKFGIAANIAFPLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQL LDKDEFVLLRHYLTDDTDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGE AQNWQAPLWKALVEYTAALGQPRWHRANLYQRFIQTLESATACPPGLPSRVFICGISA LPPVYLRALQALGKHIEIHLLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPL FRENQNPEALFNSDGEQDIGNPLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNL LHRIQADILELESHAVAGVNLEEYSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDR LLAMLEADPTLTPRDIIVMVADIDSYSPFIQAVFGSAPTERYLPYAISDRRARQSHPV LQAFISLLSLPDSRFVSEDVLALLDVPVLAARFTINEEGLRYLRLWVNESGIRWGIDD DNVRELELPATGQHTWQFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS LLMQLNIWRRGLAQERPLEEWLPVCRDMFNDFFLPDADTEAAMTLIEQQWQAIIAEGV AAEYGDAVPISLLRDELAQRLDQERISQRFLAGPINICTLMPMRSIPFRVVCLLGMND GVYPRQLAPLGFDLMSQKPMRGDRSRRDDDRYLFLEALISAQQTLYISYIGRSIQDNS ERFPSVLVQELVDYIGQSHYLPGDETLTCDESEARVKAHITRLHTRMPFDAQNYQPGE QQSYAREWLPAASQSGKAHSDFVQPLPFTMPETLTLESLQRFWAHPVRAFFQMRLQVN FRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEEDDAERLFRRFRAAGELPYGAFGE IFWDAQCQEMQQLASRVIACRKPSQSLEVDLLCNGVQLTGWLPQVQEDGLLRWRPALI SVAQGVQLWLEHLVYCASGGSGESRLFLRKEGEWRFPPLDKTQAMAYLAQLIEGYREG MSSPLLVLPESGGAWIKACYDAENDVMLDDDDTLQKARTKFLQAYEGNMMVSGEGEDI WYQRLWRQLESETLQAIIAQSRHYLLPLFRFNQSR" regulatory complement(3156095..3156100) /regulatory_class="ribosome_binding_site" /gene="recC" /locus_tag="STM2996" /note="putative RBS for recC; RegulonDB:STMS1H003045" gene complement(3156105..3156436) /gene="ppdC" /locus_tag="STM2997" /db_xref="GeneID:1254520" CDS complement(3156105..3156425) /gene="ppdC" /locus_tag="STM2997" /note="putative component in type IV pilin biogenesis; similar to E. coli prepilin peptidase dependent protein C (AAC75862.1); Blastp hit to AAC75862.1 (107 aa), 69% identity in aa 1 - 106" /codon_start=1 /transl_table=11 /product="prepilin peptidase dependent protein C" /protein_id="NP_461914.1" /db_xref="GI:16766299" /db_xref="GeneID:1254520" /translation="MSHPLNLQRGFSLPEVLVAMVLMVMIVTALSGYQRVLMHSFALR HQYLQIWRQAWQQTALYPFSPADDWKANRMQTTQSGCVSISVTMVSPSGRQGQMTRLH CPNR" gene complement(3156410..3156831) /gene="ygdB" /locus_tag="STM2998" /db_xref="GeneID:1254521" CDS complement(3156410..3156817) /gene="ygdB" /locus_tag="STM2998" /note="similar to E. coli orf, hypothetical protein (AAC75863.1); Blastp hit to AAC75863.1 (121 aa), 52% identity in aa 1 - 121" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461915.1" /db_xref="GI:16766300" /db_xref="GeneID:1254521" /translation="MNRERGASSLILALLILILGSLLLQGVNQQQASYAARVTTQSLA IQRQALVQSALEWGRGQLWSGVTEMECRRYSSSGARVCLRRLSGDEVVMAAQDDGMTL WRLGNVIQGSIVFSPHGWSDFCPLKEVALCRIP" regulatory complement(3156431..3156436) /regulatory_class="ribosome_binding_site" /gene="ppdC" /locus_tag="STM2997" /note="putative RBS for ppdC; RegulonDB:STMS1H003046" gene complement(3156814..3157388) /gene="ppdB" /locus_tag="STM2999" /db_xref="GeneID:1254522" CDS complement(3156814..3157377) /gene="ppdB" /locus_tag="STM2999" /note="putative component in type IV pilin biogenesis; similar to E. coli prepilin peptidase dependent protein B (AAC75864.1); Blastp hit to AAC75864.1 (187 aa), 67% identity in aa 3 - 187" /codon_start=1 /transl_table=11 /product="prepilin peptidase dependent protein B" /protein_id="NP_461916.1" /db_xref="GI:16766301" /db_xref="GeneID:1254522" /translation="MSITTRGFSLLEVVLAMAIGSILLLGSARFLPALQREIWHNTRQ LSLEDEIWQRTYTVAKHLQRAGYCHGHCIGEGLHLAEQGQCVIVQWDGNNNGVWDTIP AKEADQTGFRMKDNVLETLRGATSCQGKGWEKMTDPNTVLITAFTVERRDITGFSPVL MLHLRGASKAEPQTVIDAQYSVTGFNL" regulatory complement(3156826..3156831) /regulatory_class="ribosome_binding_site" /gene="ygdB" /locus_tag="STM2998" /note="putative RBS for ygdB; RegulonDB:STMS1H003047" gene complement(3157368..3157838) /gene="ppdA" /locus_tag="STM3000" /db_xref="GeneID:1254523" CDS complement(3157368..3157838) /gene="ppdA" /locus_tag="STM3000" /note="putative component in type IV pilin biogenesis; similar to E. coli prepilin peptidase dependent protein A (AAC75865.1); Blastp hit to AAC75865.1 (156 aa), 65% identity in aa 1 - 155" /codon_start=1 /transl_table=11 /product="prepilin peptidase dependent protein A" /protein_id="NP_461917.1" /db_xref="GI:16766302" /db_xref="GeneID:1254523" /translation="MKKQQGYTLIETVVAMSLIIILSATGLYGWQRWQQQQRLWQTAC QVRDYLLQLRGDAHWHNRDHILRVVSEGGSWCFVSSVATQTSCTPSSPFVFTPDWRDV VLADITPSLAFFGLRNTAWAGHIVLKNAAGEWRLVVSSWGRIRLCERNEAATCQ" regulatory complement(3157383..3157388) /regulatory_class="ribosome_binding_site" /gene="ppdA" /locus_tag="STM3000" /note="putative RBS for ppdB; RegulonDB:STMS1H003048" gene complement(3158023..3158825) /gene="thyA" /locus_tag="STM3001" /db_xref="GeneID:1254524" CDS complement(3158023..3158817) /gene="thyA" /locus_tag="STM3001" /EC_number="2.1.1.45" /note="similar to E. coli thymidylate synthetase (AAC75866.1); Blastp hit to AAC75866.1 (264 aa), 96% identity in aa 1 - 264" /codon_start=1 /transl_table=11 /product="thymidylate synthase" /protein_id="NP_461918.1" /db_xref="GI:16766303" /db_xref="GeneID:1254524" /translation="MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQEGFPL VTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWP TPDGRHIDQIATVLSQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLDVGDFVWTGGDTHLYSNHMEQTHL QLSREPRALPKLVIKRKPDSLFDYRFDDFEIEGYDPHPGIKAPVAI" regulatory complement(3158820..3158825) /regulatory_class="ribosome_binding_site" /gene="thyA" /locus_tag="STM3001" /note="putative RBS for thyA; RegulonDB:STMS1H003049" gene complement(3158824..3159709) /gene="lgt" /locus_tag="STM3002" /db_xref="GeneID:1254525" CDS complement(3158824..3159699) /gene="lgt" /locus_tag="STM3002" /EC_number="2.4.99.-" /note="prolipoprotein diacylglyceryl transferase. (SW:LGT_SALTY)" /codon_start=1 /transl_table=11 /product="prolipoprotein diacylglyceryl transferase" /protein_id="NP_461919.1" /db_xref="GI:16766304" /db_xref="GeneID:1254525" /translation="MTSSYLHFPDFDPVIFSIGPVALHWYGLMYLVGFVFAMWLAVRR ANRPGSGWTKNEVENLLYAGFLGVFLGGRIGYVLFYNFPLFLDNPLYLFRVWDGGMSF HGGLIGVILVMIIFARRTKRSFFQVSDFIAPLIPFGLGAGRLGNFINGELWGRVDPDF RFAMLFPGSRAEDIALLPSHPQWQPIFDTYGVLPRHPSQLYELALEGVVLFIILNLFI RKPRPMGAVSGLFLIGYGAFRIIVEFFRQPDAQFTGAWVQYISMGQILSIPMIIAGAI MMVWAYRRRPQQHVS" regulatory complement(3159704..3159709) /regulatory_class="ribosome_binding_site" /gene="lgt" /locus_tag="STM3002" /note="putative RBS for lgt; RegulonDB:STMS1H003050" gene complement(3159915..3162181) /gene="ptsP" /locus_tag="STM3003" /db_xref="GeneID:1254526" CDS complement(3159915..3162161) /gene="ptsP" /locus_tag="STM3003" /EC_number="2.7.3.9" /note="similar to E. coli PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins) (AAC75868.1); Blastp hit to AAC75868.1 (748 aa), 94% identity in aa 1 - 748" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate--protein phosphotransferase PtsP" /protein_id="NP_461920.1" /db_xref="GI:16766305" /db_xref="GeneID:1254526" /translation="MLTRLREIVEKVASAPRLNEALNILVTDICLAMDTEVCSVYLAD HDRRCYYLMATRGLKKPRGRTVALAFDEGIVGLVGRLAEPINLADAQKHPSFKYIPSV KEERFRAFLGVPIIQRRQLLGVLVVQQRELRQYDESEESFLVTLATQMAAILSQSQVT ALFGQYRQTRIRALPAAPGVAIATGWQDATMPLMEQVYEASTLDTSLERERLTGALEE AANEFRRYSKRFAAGAQKETAAIFDLYSHLLSDARLRRELFAEVDKGAVAEWAVKKII EKFAEQFAALTDNYLKERAGDLRTLGQRLLFHLDDSVQGPNAWPERFILVADELSATT LAELPQDRLAGVVVRDGAANSHAAIMVRALGIPTVMGADIQPSVLHRRTLVVDGYRGE LLVDPEPVLIQEYQRLISEEIELSRLAEDDVNLPAQLKSGERVKVMLNAGLSPEHEEK LGSRIDGIGLYRTEIPFMLQSGFPSEEEQVAQYQGMLQMFNDKPVTLRTLDVGADKQL PYMPISEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATGNLSILLPMVTSIDEVD EARRLIERAGREVEEMIGYAIPKPRIGIMLEVPSMVFMLPHLANRIDFISVGTNDLTQ YILAVDRNNTRVASIYDSLHPAMLRALSMIAQEAEKHGLDLRLCGEMAGDPMCVAILI GLGYRHLSMNGRSVARVKYLLRHIDFEDAQTLARRSLEAQMATEVRHQVAAFMERRGM GGLIRGGL" gene complement(3162174..3162715) /gene="ygdP" /locus_tag="STM3004" /db_xref="GeneID:1254527" CDS complement(3162174..3162704) /gene="ygdP" /locus_tag="STM3004" /note="NTP pyrophosphohydrolase; similar to E. coli putative invasion protein (AAC75869.1); Blastp hit to AAC75869.1 (176 aa), 94% identity in aa 1 - 176" /codon_start=1 /transl_table=11 /product="RNA pyrophosphohydrolase" /protein_id="NP_461921.1" /db_xref="GI:16766306" /db_xref="GeneID:1254527" /translation="MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGE SAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLL QLMSADAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMALQD NPPKLQSAPAYRRKRG" regulatory complement(3162176..3162181) /regulatory_class="ribosome_binding_site" /gene="ygdP" /locus_tag="STM3004" /note="putative RBS for ptsP; RegulonDB:STMS1H003051" regulatory complement(3162710..3162715) /regulatory_class="ribosome_binding_site" /gene="ygdP" /locus_tag="STM3004" /note="putative RBS for ygdP; RegulonDB:STMS1H003052" gene 3163375..3164082 /gene="mutH" /locus_tag="STM3005" /db_xref="GeneID:1254528" regulatory 3163375..3163380 /regulatory_class="ribosome_binding_site" /gene="mutH" /locus_tag="STM3005" /note="putative RBS for mutH; RegulonDB:STMS1H003053" CDS 3163387..3164082 /gene="mutH" /locus_tag="STM3005" /note="similar to E. coli methyl-directed mismatch repair (AAC75870.1); Blastp hit to AAC75870.1 (229 aa), 88% identity in aa 1 - 229" /codon_start=1 /transl_table=11 /product="DNA mismatch repair endonuclease MutH" /protein_id="NP_461922.1" /db_xref="GI:16766307" /db_xref="GeneID:1254528" /translation="MSALCPLLTPPASEALLLAQARQLSGYTLGELAAMAGITTPKDL KRDKGWIGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVAPLTG NSGVTWETSHVRHKLKRVLWVPVEGDRSIPLAERRVGSPLLWSPSEEEDRQLRLDWEE LMDMIVLGQVERITARHGEVLQLRPKAANARALTEAIGARGEPILTLPRGFYLKKNFT QALLARHFLLQNP" gene 3164250..3164977 /gene="ygdQ" /locus_tag="STM3006" /db_xref="GeneID:1254529" regulatory 3164250..3164255 /regulatory_class="ribosome_binding_site" /gene="ygdQ" /locus_tag="STM3006" /note="putative RBS for ygdQ; RegulonDB:STMS1H003054" CDS 3164264..3164977 /gene="ygdQ" /locus_tag="STM3006" /note="similar to E. coli putative transport protein (AAC75871.1); Blastp hit to AAC75871.1 (237 aa), 94% identity in aa 1 - 237" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461923.1" /db_xref="GI:16766308" /db_xref="GeneID:1254529" /translation="MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQ RNHARRLGLAAAMVMRLALLASIAWVTRLTNPLFELFGEAISARDLILLLGGLFLIWK ASKEIHESIEGEEEGLKTRVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAA VVIAVGVMMFAARPIGEFVDRHPSVKMLALSFLILVGFTLILESFDVHVPKGYIYFAM FFSIAVESLNLLRNKKNPL" gene 3165135..3165365 /gene="ygdR" /locus_tag="STM3007" /db_xref="GeneID:1254530" regulatory 3165135..3165140 /regulatory_class="ribosome_binding_site" /gene="ygdR" /locus_tag="STM3007" /note="putative RBS for ygdR; RegulonDB:STMS1H003055" CDS 3165147..3165365 /gene="ygdR" /locus_tag="STM3007" /note="similar to E. coli orf, hypothetical protein (AAC75872.1); Blastp hit to AAC75872.1 (72 aa), 90% identity in aa 1 - 72" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461924.1" /db_xref="GI:16766309" /db_xref="GeneID:1254530" /translation="MKKWAVVISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPQVDD DTGLVSYTDAQGNEMQINRDEVSQIIER" gene 3165544..3166596 /gene="tas" /locus_tag="STM3008" /db_xref="GeneID:1254531" regulatory 3165544..3165549 /regulatory_class="ribosome_binding_site" /gene="tas" /locus_tag="STM3008" /note="putative RBS for tas; RegulonDB:STMS1H003056" CDS 3165556..3166596 /gene="tas" /locus_tag="STM3008" /note="similar to E. coli orf, hypothetical protein (AAC75873.1); Blastp hit to AAC75873.1 (346 aa), 91% identity in aa 1 - 346" /codon_start=1 /transl_table=11 /product="NADP(H)-dependent aldo-keto reductase" /protein_id="NP_461925.1" /db_xref="GI:16766310" /db_xref="GeneID:1254531" /translation="MHYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAIANGI NLIDAAEMYPVPPRPETQGLTESYIGNWLAKRGNREKLIIASKVSGPARNNDQGIRPH QALDRKNIREALHDSLTRLQTDYLDLYQVHWPQRPTNCFGKLGYNWTDSTPVVSLLET LDALSEFQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSYEVG LAEVSQYEGVELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQAQKAVAS YVDIAKRHNLDPAQMALAFVRRQPFVASTLLGATTMAQLKTNVESLHLTLSEEVLAEI EAAHQVYTYPAP" gene complement(3166683..3167898) /gene="ygeD" /locus_tag="STM3009" /db_xref="GeneID:1254532" CDS complement(3166683..3167885) /gene="ygeD" /locus_tag="STM3009" /note="resistance protein; similar to E. coli putative resistance proteins (AAC75874.1); Blastp hit to AAC75874.1 (397 aa), 88% identity in aa 1 - 396" /codon_start=1 /transl_table=11 /product="lysophospholipid transporter LplT" /protein_id="NP_461926.1" /db_xref="GI:16766311" /db_xref="GeneID:1254532" /translation="MSESVRTNTSIWSKGMLSVIVAQFLSAFGDNALLFATLALLKAQ FYPDWSQPVLQMVFVGAYILFAPFVGQIADSFAKGRVMMVANGLKLAGAAGICLGINP FVGYTLVGIGAAAYSPAKYGILGELTTGDKLVKANGLMEASTIAAILLGSVAGGVLAD WHVIAALVACALAYAGAVAANLFIPKLVAARPGQSWRLSAMTRSFFSACVVLWRNGET RFSLVGTGLFWGAGVTLRFLLVLWVPVALGITDNATPTYLNAMVAVGIVVGAGAAAKL VTLETVSRCMPAGILIGVVVAIFSLQHALLPAYALLLLIGMLGGFFVVPLNALLQERG KKSVGAGNAIAVQNLGENSAMLLMLGLYSLAVLVGVPAVAIGIGFGVLFALAIAALWI WQRRQASY" gene complement(3167878..3170049) /gene="aas" /locus_tag="STM3010" /db_xref="GeneID:1254533" CDS complement(3167878..3170037) /gene="aas" /locus_tag="STM3010" /EC_number="6.2.1.20" /note="bifunctional; similar to E. coli 2-acyl-glycerophospho-ethanolamine acyltransferase; acyl-acyl-carrier protein synthetase (AAC75875.1); Blastp hit to AAC75875.1 (719 aa), 91% identity in aa 1 - 719" /codon_start=1 /transl_table=11 /product="bifunctional 2-acylglycerophosphoethanolamine acyltransferase/acyl-ACP synthetase" /protein_id="NP_461927.1" /db_xref="GI:16766312" /db_xref="GeneID:1254533" /translation="MLFGFFRNLFRVLYRVRVTGDVRALQGNRVLITPNHVSFIDGML LALFLPVRPVFAVYTSISQQWYMRWLTPLIDFVPLDPTKPMSIKHLVRLVEQGRPVVI FPEGRISVTGSLMKIYDGAGFVAAKSGATVIPLRIDGAELTPFSRLKGLVKRRLFPRI QLHILPPTQIPMPEAPRARDRRKIAGEMLHQIMMEARMAVRPRETLYESLLAAQYRYG AGKNCIEDINFTPDTYRKLLTKTLFVGRILEKYSVEGEKIGLMLPNAAISAAVIFGAV SRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLE DLKADVTPADKLWIFAHLLAPRLAQVKQQPEDAAIILFTSGSEGHPKGVVHSHKSILA NVEQIKTIADFTANDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPEL VYDRNCTVLFGTSTFLGNYARFANPYDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL EGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLAVPGIENGGRLQLKGPNIMNG YLRVEKPGVLEVPSAENSRGETERGWYDTGDIVRFDENGFVQIQGRAKRFAKIAGEMV SLEMVEQLALGVSADKMHATAIKSDASKGEALVLFTTDSELTREKLQHYAREHGIPEL AVPRDIRYLKQLPLLGSGKPDFVTLKSWVDAPEQHHE" regulatory complement(3167893..3167898) /regulatory_class="ribosome_binding_site" /gene="ygeD" /locus_tag="STM3009" /note="putative RBS for ygeD; RegulonDB:STMS1H003057" regulatory complement(3170044..3170049) /regulatory_class="ribosome_binding_site" /gene="aas" /locus_tag="STM3010" /note="putative RBS for aas; RegulonDB:STMS1H003058" gene 3170619..3171658 /gene="galR" /locus_tag="STM3011" /db_xref="GeneID:1254534" regulatory 3170619..3170624 /regulatory_class="ribosome_binding_site" /gene="galR" /locus_tag="STM3011" /note="putative RBS for galR; RegulonDB:STMS1H003059" CDS 3170630..3171658 /gene="galR" /locus_tag="STM3011" /note="GalR/LacI family; similar to E. coli repressor of galETK operon (AAC75876.1); Blastp hit to AAC75876.1 (343 aa), 90% identity in aa 1 - 343" /codon_start=1 /transl_table=11 /product="transcriptional regulator GalR" /protein_id="NP_461928.1" /db_xref="GI:16766313" /db_xref="GeneID:1254534" /translation="MATIKDVARLAGVSVATVSRVINDSPKASEASRLAVTSAMESLS YHPNANARALAQQATETLGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQ KERQAIEQLIRHRCAALVVHAKMIPDADLASLMKQIPGMVLINRILPGLEHRCVALDD RYGAWLATRHLIQQGHTRIGYICSNHTISDAEDRLRGYYDALAESHIPANDRLVTFGE PDESGGEQAMTELLGRGRNFTAVACYNDSMAAGAMGVLNDNGVGVPGEVSLIGFDDVL VSRYVRPRLTTIRYPIVTMATQAAELALALAGKCPTPEVTHVFSPTLVRRHSVSTPTD TGHLSTTD" gene 3171660..3172691 /locus_tag="STM3012" /db_xref="GeneID:1254535" regulatory 3171660..3171665 /regulatory_class="ribosome_binding_site" /locus_tag="STM3012" /note="putative RBS for STM3012; RegulonDB:STMS1H003060" CDS 3171669..3172691 /locus_tag="STM3012" /note="similar to E. coli ascBF operon repressor (AAC75756.1); Blastp hit to AAC75756.1 (337 aa), 41% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_461929.1" /db_xref="GI:16766314" /db_xref="GeneID:1254535" /translation="MMATMLDVSRHAGVSKATVSRVLNGTGQVKESTRQKVFTAMQAL GYRPNLLARSLANRTSNSIGLVVSTFDGFYFGSLLRRASRQAESHNKQLIVTDGHDTP EREQKAVQMLADRQCDAIILYTRYMDELAILSLIDATEMPLVIINRNVTQARDRAIFF EQETAAFQAVEYLITQGHRDIACITLPVHTPTGTSRVAGYRKALEKYGIPWQPAKVKY GDYTLTRGYDACRELLEEGVTFSALFACNDDTALGAAKALRQAGLRIPQDVSLFGFDD APGATWLEPGLSTVYLPIEAMIATAIDQAVRLANSEPVAPIPPFTGTLILRESVAAGP FFQRPA" gene complement(3172701..3173975) /gene="lysA" /locus_tag="STM3013" /db_xref="GeneID:1254536" CDS complement(3172701..3173963) /gene="lysA" /locus_tag="STM3013" /EC_number="4.1.1.20" /note="similar to E. coli diaminopimelate decarboxylase (AAC75877.1); Blastp hit to AAC75877.1 (420 aa), 88% identity in aa 1 - 420" /codon_start=1 /transl_table=11 /product="diaminopimelate decarboxylase" /protein_id="NP_461930.1" /db_xref="GI:16766315" /db_xref="GeneID:1254536" /translation="MSLPHYHAETDLNAENLLRLPAEFGCPVWVYDAHIIRRQIAALQ QFDVVRFAQKACSNIHILRLMRALGVKVDSVSLGEIERALAAGYDPQTCPDDIVFTAD VIDAATLARVSELHIPVNAGSVDMLTQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGE NSKHGIWHSDLPAALAVMQKYRLKLVGIHMHIGSGVDYGHLEQVCGAMVRQVLECGQD VEAISAGGGLSIPYREGEEPVDTRHYYGLWNAAREQIARHLGHAVKLEIEPGRFLVAQ SGVLVTQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHRISALAADGRALENGPWVE TVVAGPLCESGDVFTQQEGGMVETRALPAVIPGDYLVLHDTGAYGASMSSNYNSRPLL PEVLFDNGQARLIRRRQTIEELLALEML" regulatory complement(3173970..3173975) /regulatory_class="ribosome_binding_site" /gene="lysA" /locus_tag="STM3013" /note="putative RBS for lysA; RegulonDB:STMS1H003061" gene 3174070..3175016 /gene="lysR" /locus_tag="STM3014" /db_xref="GeneID:1254537" regulatory 3174070..3174075 /regulatory_class="ribosome_binding_site" /gene="lysR" /locus_tag="STM3014" /note="putative RBS for lysR; RegulonDB:STMS1H003062" CDS 3174081..3175016 /gene="lysR" /locus_tag="STM3014" /note="similar to E. coli positive regulator for lys (AAC75878.1); Blastp hit to AAC75878.1 (311 aa), 86% identity in aa 1 - 311" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="NP_461931.1" /db_xref="GI:16766316" /db_xref="GeneID:1254537" /translation="MAAVNLRHIEIFHAVMTAGNLTEAARLLHTSQPTVSRELARFEK VLGLTLFERTRGRLHPTVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIACLP VFSQSFLPPLLPPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTETLHAPAGTTR TELLTLNEVCVLPCDHPLAAKTVLTPDDFQGENFISLSRLDSYRQLLDTLFAEHQVKR RMVVETHSAASVCAMVRAGAGVSIVNPLTALDYAASGVTVRRFSIDVPFTVSLIRPLH RPASALVDAFSKHLQTHLSRLVEPLEVILGPMTKA" gene complement(3174988..3175707) /gene="ygeA" /locus_tag="STM3015" /db_xref="GeneID:1254538" CDS complement(3174988..3175695) /gene="ygeA" /locus_tag="STM3015" /note="similar to E. coli putative resistance proteins (AAC75879.1); Blastp hit to AAC75879.1 (230 aa), 79% identity in aa 1 - 230" /codon_start=1 /transl_table=11 /product="aspartate/glutamate racemase" /protein_id="NP_461932.1" /db_xref="GI:16766317" /db_xref="GeneID:1254538" /translation="MKTIGLLGGMSWESTIPYYRLINEGIKQQLGGLHSASLLLHSVD FHDIEVCQRRDEWDKAGDILAQAAHGLQQAGAEGIVLCTNTMHKIAHVIESRCSLPFL HIADATGRAIARQGLHRVALLGTRYTMEQDFYRGRLEQQFAIETIVPEADDRARINQV IFDELCQGTFTDASRHYYLQVIEQLAAQGAQGVIFGCTEIGLLVPQTQSALPVFDTTA IHAADAVSFMLSSSAPE" regulatory complement(3175702..3175707) /regulatory_class="ribosome_binding_site" /gene="ygeA" /locus_tag="STM3015" /note="putative RBS for ygeA; RegulonDB:STMS1H003063" gene complement(3175808..3177396) /gene="araE" /locus_tag="STM3016" /db_xref="GeneID:1254539" CDS complement(3175808..3177226) /gene="araE" /locus_tag="STM3016" /note="low-affinity transporter;MFS family; similar to E. coli low-affinity L-arabinose transport system proton symport protein (AAC75880.1); Blastp hit to AAC75880.1 (472 aa), 97% identity in aa 1 - 472" /codon_start=1 /transl_table=11 /product="arabinose:proton symporter" /protein_id="NP_461933.1" /db_xref="GI:16766318" /db_xref="GeneID:1254539" /translation="MVSINHDSALTPRSLRDTRRMNMFVSVSAAVAGLLFGLDIGVIA GALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLG SLGSAFASSVEVLIGARVILGVAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLG IVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPNSPRWLAQKGRHIEAEEVL RMLRDTSEKARDELNEIRESLKLKQGGWALFKANRNVRRAVFLGMLLQAMQQFTGMNI IMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVM ALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKC RDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNIAFIGITFWLIPETK NVTLEHIERKLMAGEKLRNIGV" regulatory complement(3177230..3177235) /regulatory_class="ribosome_binding_site" /gene="araE" /locus_tag="STM3016" /note="putative RBS for araE; RegulonDB:STMS1H003064" protein_bind complement(3177292..3177314) /gene="araE" /locus_tag="STM3016" /note="putative binding site for AraC, RegulonDB: STMS1H000010" /bound_moiety="AraC" protein_bind complement(3177306..3177324) /gene="araE" /locus_tag="STM3016" /note="putative binding site for AraC, RegulonDB: STMS1H000011" /bound_moiety="AraC" protein_bind complement(3177339..3177354) /gene="araE" /locus_tag="STM3016" /note="putative binding site for CRP, RegulonDB: STMS1H000088" /bound_moiety="CRP" regulatory complement(3177369..3177377) /regulatory_class="minus_10_signal" /gene="araE" /locus_tag="STM3016" /note="putative -10_signal for araE; RegulonDB:STMLTH004571" regulatory complement(3177388..3177396) /regulatory_class="minus_35_signal" /gene="araE" /locus_tag="STM3016" /note="putative -35_signal for araE; RegulonDB:STMLTH004571" gene complement(3177580..3178352) /gene="kduD" /locus_tag="STM3017" /db_xref="GeneID:1254540" CDS complement(3177580..3178341) /gene="kduD" /locus_tag="STM3017" /EC_number="1.1.1.125" /note="similar to E. coli 2-deoxy-D-gluconate 3-dehydrogenase (AAC75881.1); Blastp hit to AAC75881.1 (253 aa), 93% identity in aa 1 - 253" /codon_start=1 /transl_table=11 /product="2-deoxy-D-gluconate 3-dehydrogenase" /protein_id="NP_461934.1" /db_xref="GI:16766319" /db_xref="GeneID:1254540" /translation="MILNAFSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE PTETIARVTALGRRFLSLTADLRQIDGIPALLERAVAEYGHIDILVNNAGLIRREDAI DFTEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTA SKSGVMGITRLMANEWAKHNINVNAIAPGYMSTNNTQQLRADAQRSAEILDRIPAGRW GLPGDLMGPVVFLASSAADYINGYTIAVDGGWLAR" regulatory complement(3178347..3178352) /regulatory_class="ribosome_binding_site" /gene="kduD" /locus_tag="STM3017" /note="putative RBS for kduD; RegulonDB:STMS1H003065" gene complement(3178398..3179243) /gene="kduI" /locus_tag="STM3018" /db_xref="GeneID:1254541" CDS complement(3178398..3179234) /gene="kduI" /locus_tag="STM3018" /EC_number="5.3.1.17" /note="similar to E. coli homolog of pectin degrading enzyme 5-keto 4-deoxyuronate isomerase (AAC75882.1); Blastp hit to AAC75882.1 (278 aa), 85% identity in aa 1 - 278" /codon_start=1 /transl_table=11 /product="pectin-degrading enzyme" /protein_id="NP_461935.1" /db_xref="GI:16766320" /db_xref="GeneID:1254541" /translation="MDVRQSIHSEHAKTLDTQALRREFLIENIFVADEYTMVYSHIDR IIVGGIMPVSHPVEIGGEVGKQLGVSRLLDRRELGVINIGGAGAIIVDGQRHDIGHRD ALYIGKGAKELVFVSNEASRPAKFYYNCAPAHTAYPTKKVSPADVAPVTLGDNLTSNR RTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYLYFNMEEDSCVFH MMGQPQETRHIVMRNEQAVISPSWSIHSGVGTKAYTFVWGMVGENQVFDDMDHVAVQD LR" regulatory complement(3179238..3179243) /regulatory_class="ribosome_binding_site" /gene="kduI" /locus_tag="STM3018" /note="putative RBS for kduI; RegulonDB:STMS1H003066" gene complement(3179664..3180851) /gene="yqeF" /locus_tag="STM3019" /db_xref="GeneID:1254542" CDS complement(3179664..3180842) /gene="yqeF" /locus_tag="STM3019" /EC_number="2.3.1.9" /note="similar to E. coli putative acyltransferase (AAC75883.1); Blastp hit to AAC75883.1 (394 aa), 91% identity in aa 2 - 393" /codon_start=1 /transl_table=11 /product="putative acetyl-CoA acetyltransferase" /protein_id="NP_461936.1" /db_xref="GI:16766321" /db_xref="GeneID:1254542" /translation="MKEVVIVGALRTPIGCFQGTLARHSAVELGSMVVKALIERTGVD ANAIDEVILGQVLTAGAGQNPARQSAIKGGLPTTVSAITINDVCGSGLKALHLATQAI QCGEADIVIAGGQENMSRAPHVLNDSRSGALPDADNLVDSLVHDGLWDAFNDYHIGVT AENLAREYGISRELQDAYALSSQQKARAAIDTGRFKDEIVPIVTQRNGQTAIVDTDEQ PRADASAEGLALLHPAFDSLGSVTAGNASSINDGAAAVMMMSEAKAQALGLPVLARIR AFASVGVDPALMGIAPVYATRRCLERAGWQLTEVDLIEANEAFAAQALSVGKMLEWDE RRVNVNGGAIALGHPIGASGCRILVSLVHEMVKRDARKGLATLCIGGGQGVALTIERD " regulatory complement(3180846..3180851) /regulatory_class="ribosome_binding_site" /gene="yqeF" /locus_tag="STM3019" /note="putative RBS for yqeF; RegulonDB:STMS1H003067" gene complement(3180965..3181833) /locus_tag="STM3020" /db_xref="GeneID:1254543" CDS complement(3180965..3181828) /locus_tag="STM3020" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC73606.1); Blastp hit to AAC73606.1 (308 aa), 26% identity in aa 2 - 275" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_461937.1" /db_xref="GI:16766322" /db_xref="GeneID:1254543" /translation="MRYSPEALIAFVETVSCGSFSAAARRLRKSQSTISIAIAHLEAD LGFSLFDRSSRQPVLTEEGKRVLSYVQAILSASDRLDEVALTLSGETEARLTFVLSDT LHPDSLEELMAQFDRQFPHTEFECLIGENDDVIDLLQKGRAQIGLIEARDDYPTDIGA ARLPVQSWMGVYVATTHPLASQTNLQWEQLHTWRELRLNTYLDSNANITRGPAWSAPN YLLLLSMAVQGFGWCVLPCALVEEFAAEKPLAQLDVPGWPRAIAIDLLWNKKTPPGTA GNWLRYHLQQK" regulatory complement(3181828..3181833) /regulatory_class="ribosome_binding_site" /locus_tag="STM3020" /note="putative RBS for STM3020; RegulonDB:STMS1H003068" gene 3181899..3182387 /locus_tag="STM3021" /db_xref="GeneID:1254544" regulatory 3181899..3181904 /regulatory_class="ribosome_binding_site" /locus_tag="STM3021" /note="putative RBS for STM3021; RegulonDB:STMS1H003069" CDS 3181905..3182387 /locus_tag="STM3021" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461938.1" /db_xref="GI:16766323" /db_xref="GeneID:1254544" /translation="MIKSKVFSFMQHDAIQRRSLPERIFHAVCFEGIATAILAPTTAW LMQRSVLEMGGLTILLATTAMIWNIIYNALFDRLWPAHQVRRTAKVRALHALGFESGF IVIGVSIVAWVLNVSLLQAFTLEIGFFLFFLPYTMLYNWAYDVLRQRIVTRRQQRVSA " gene 3182529..3183758 /locus_tag="STM3022" /db_xref="GeneID:1254545" CDS 3182529..3183758 /locus_tag="STM3022" /note="similar to E. coli putative transporter protein (AAC75884.1); Blastp hit to AAC75884.1 (409 aa), 90% identity in aa 1 - 408" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_461939.1" /db_xref="GI:16766324" /db_xref="GeneID:1254545" /translation="MSKIWSKDETLWSFALYGTAVGAGTLFLPIQLGSAGAIVLFITA LVAWPLTYWPHKALCQFILSSKTSAGEGITGAVTHYYGKKIGNIITTLYFIAFFVVVL IYAVAITNSLTEQLAKHIQIDIRIRMAVSFGVVLILNMIFLMGRHATLRVMGFLVFPL IAYFLFLSLYLTGSWQPSLLTGQMSLDSHTLHQVWISIPVMVFAFSHTPIISTFAIDR RENFGDQAMDKCKKIMKVAYLIICLSVLFFVFSCLLSIPPSYIEDARNEGVTILSALS MMPNAPAWLSISGIIVAVVAMSKSFLGTYFGVIEGATEMVRTTLQQVGVKKSRAFNRA LSIMLVSGITFIICCINPNAISMIYAISGPLIAMILFIMPTLSTYLIPALKPYRSVGN FITLVVGLLCVSVMFFG" gene complement(3183789..3184072) /gene="yohL" /locus_tag="STM3023" /db_xref="GeneID:1254546" CDS complement(3183789..3184061) /gene="yohL" /locus_tag="STM3023" /note="similar to E. coli orf, hypothetical protein (AAC75166.1); Blastp hit to AAC75166.1 (90 aa), 93% identity in aa 1 - 90" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_461940.1" /db_xref="GI:16766325" /db_xref="GeneID:1254546" /translation="MSHTIRDKQKLKARTSKIQGQVIALKKMLDEPHECAAVLQQIAA IRGAVNGLMREVIKGHLTEHIVHQSDEARREEDLDVILKVLDSYIK" regulatory complement(3184067..3184072) /regulatory_class="ribosome_binding_site" /gene="yohL" /locus_tag="STM3023" /note="putative RBS for yohL; RegulonDB:STMS1H003070" gene 3184170..3185049 /gene="yohM" /locus_tag="STM3024" /db_xref="GeneID:1254547" regulatory 3184170..3184175 /regulatory_class="ribosome_binding_site" /gene="yohM" /locus_tag="STM3024" /note="putative RBS for yohM; RegulonDB:STMS1H003071" CDS 3184183..3185049 /gene="yohM" /locus_tag="STM3024" /note="similar to E. coli orf, hypothetical protein (AAC75167.1); Blastp hit to AAC75167.1 (274 aa), 78% identity in aa 1 - 274" /codon_start=1 /transl_table=11 /product="nickel/cobalt efflux protein RcnA" /protein_id="NP_461941.1" /db_xref="GI:16766326" /db_xref="GeneID:1254547" /translation="MGEFSTLLQQGNGWFFIPSAILLGILHGLEPGHSKTMMAAFIIA IKGTVKQAVMLGLAATLSHTAIVWLIALGGMYLSRAFTAQSVEPWLQLISAIIILSTA CWMFWRTWRGEQQWLAGNHHHDHDHDHDHDHDHDHDHDHDHDHDHDHHGHIHPEGATS KAYQDAHERAHAADIQRRFDGQTVTNGQILLFGLTGGLIPCPAAITVLLICIQLKAFT LGATMVLSFSLGLALTLVTVGVGAAISVQQAAKRWSGFSTLARRAPYFSSILIGLVGV YMGIHGYTGIMQ" gene complement(3185259..3186024) /locus_tag="STM3025" /db_xref="GeneID:1254548" CDS complement(3185259..3186017) /locus_tag="STM3025" /note="transcriptional regulator SprB (gi|5007028)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461942.1" /db_xref="GI:16766327" /db_xref="GeneID:1254548" /translation="MTEHNRIPAWQIIVYGDCWPVTIAVAHLVRRFMPGCNCETAYRQ PVLLQQLRRKPEAILILCLRPREHLFLFYSLRQILPDYPVMIISDELFFSDRVVLKVY GGIPALLEQELAEILIRWRRDEQWAGGARLRRTGALDAFLLSPDPVTGFLEVPPIFNN PKRLMNYMDQLMHREILACGVSLAQLRLLQEVYRGRGRLSALCGRLNTQEKQIWQDKY RLLVKLGMRNRLRELLFGTRFCKSLQRTPFIAPQ" regulatory complement(3186019..3186024) /regulatory_class="ribosome_binding_site" /locus_tag="STM3025" /note="putative RBS for STM3025; RegulonDB:STMS1H003072" gene complement(3186660..3187743) /locus_tag="STM3026" /db_xref="GeneID:1254549" CDS complement(3186660..3187736) /locus_tag="STM3026" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461943.1" /db_xref="GI:16766328" /db_xref="GeneID:1254549" /translation="MTEWIFNLKTKLTVLVMMLCSLCVTKVYAVELGINECAVTSGQN INLRSINLTTDDFKPGPDSVIYTINQDAVFKCYMGYDTQFPQLVFNQGYFSKFTKTLD AMGLGFRMSIQETGNASSVVSFSWDEIKSTQSGNELRKEFGTKLPVGTTERKVRITLD FLYTKAYSESSAVTAFTGISNVLNIVPFSYSLRQNGFVLSGFNVRILRNGLGKVDIVP LQVNFGHIYTTYEPSQTRQANFTVIARQVLRPAMGQEFTIPLAITFGKGALTQDTGQT LNLVSLDGPNKGQPNGLRLSIKDDKGKEITFDKQEVLGDITITGAVTGNVSKVYTAVI TPTPGGSVKTGTFSAAIPVTVTYN" gene complement(3187733..3188483) /gene="stdC" /locus_tag="STM3027" /db_xref="GeneID:1254550" CDS complement(3187733..3188476) /gene="stdC" /locus_tag="STM3027" /note="similar to E. coli putative chaperone (AAC73811.1); Blastp hit to AAC73811.1 (242 aa), 40% identity in aa 20 - 230" /codon_start=1 /transl_table=11 /product="fimbrial chaperone protein StdC" /protein_id="NP_461944.1" /db_xref="GI:16766329" /db_xref="GeneID:1254550" /translation="MKNSRRSRVILLALAAAWSQYSPAAVNVDRTRIIMDAPQKTVAI TLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDKLP QDRETLFWFNVRGVPPKPEDDNVLQLAMQSQLKLFYRPKAIIRSSSDQPERKLTAERN AGHLTLRNPTPYYITVAWLGADRSHRLSGFREGVMVPPLGNLPLKAVLPAETRTLWVG YIDDYGGLQMNRYTCDALNCAFKDAGATS" regulatory complement(3187738..3187743) /regulatory_class="ribosome_binding_site" /gene="stdC" /locus_tag="STM3027" /note="putative RBS for STM3026; RegulonDB:STMS1H003073" regulatory complement(3188478..3188483) /regulatory_class="ribosome_binding_site" /gene="stdC" /locus_tag="STM3027" /note="putative RBS for stdC; RegulonDB:STMS1H003074" gene complement(3188517..3191023) /gene="stdB" /locus_tag="STM3028" /db_xref="GeneID:1254551" CDS complement(3188517..3191006) /gene="stdB" /locus_tag="STM3028" /note="similar to E. coli putative membrane protein (AAC76082.1); Blastp hit to AAC76082.1 (821 aa), 42% identity in aa 20 - 817" /codon_start=1 /transl_table=11 /product="fimbrial protein" /protein_id="NP_461945.1" /db_xref="GI:16766330" /db_xref="GeneID:1254551" /translation="MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSR EGYVAPGNYILDIWLNDQPVREQYPVRVVPVAGLDAAVICVTTDMVAMLGLKDKIIHG LKPVTGIPDGQCLELRSADSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVT AGLLDYSLMVNRYMPQQGETSTSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSD FYLPQTYLFRALPALRSKLTLGQTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPK ISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQNISGNLDVSVRESDGSVRTWQ VNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTVSPDFLLGEATWGAFNNTSLYGGL IASTGDYQSAALGIGQNMGLLGALSADVTRSDARLPHGQKQSGYSYRINYAKTFDKTG STLAFVGYRFSDRHFLSMPEYLQRRTTDGGDAWHEKQSYTVTYSQSVPVLNMSAALSV SRLNYWNAQSNNNYMLSLNKVFSLGDLQGLSASVSFARNQYTGGGSQNQVYATISIPW GDSRQVSYSVQKDNRGGLQQTVNYSDFHNPDTTWNISAGHNRYDTGSNSSFSGSVQSR LPWGQAAADATLQPGQYRSLGLSWYGSVTATAHGAAFSQSMAGNEPRMMIDTGDVAGV PVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPEDVDVSSSVISQVLTEGAVGYR KIDANQGEQVLGHIRLADGASPPFGALVVSWKTGRTAGMVGDGGLAYLTGLSGEDRRT LNVSWDGRVQCRLTLPETVTLSRGPLLLPCR" regulatory complement(3191018..3191023) /regulatory_class="ribosome_binding_site" /gene="stdB" /locus_tag="STM3028" /note="putative RBS for stdB; RegulonDB:STMS1H003075" gene complement(3191126..3191849) /gene="stdA" /locus_tag="STM3029" /db_xref="GeneID:1254552" CDS complement(3191126..3191836) /gene="stdA" /locus_tag="STM3029" /note="similar to E. coli putative fimbrial-like protein (AAC73813.1); Blastp hit to AAC73813.1 (188 aa), 32% identity in aa 8 - 187" /codon_start=1 /transl_table=11 /product="putative fimbrial-like protein" /protein_id="NP_461946.3" /db_xref="GI:1109557730" /db_xref="GeneID:1254552" /translation="MLRLTPGVYYSYESFLNAFINTLRVVFSLCKIILIHPKDILSMR NKIILAMAAAGMMYGASVFAADTTPTAGPFGSGKILFTGTITNSPCDIAPGDDAITVP FGQISYRKLNTANATTDSKPFTIHLQNCAFDPNETTIAGSAGKMSKVTVSFSGTADTS GKAYVSTGSAQHVGVQLLKGDNTSLITPNTPMPDGDAQQLQAGNNELNFFARLIALTD AATPGDVNASVTYTLKYL" regulatory complement(3191844..3191849) /regulatory_class="ribosome_binding_site" /gene="stdA" /locus_tag="STM3029" /note="putative RBS for stdA; RegulonDB:STMS1H003076" gene complement(3192429..3193077) /locus_tag="STM3030" /db_xref="GeneID:1254553" CDS complement(3192429..3193061) /locus_tag="STM3030" /note="similar to E. coli orf, hypothetical protein (AAC75434.1); Blastp hit to AAC75434.1 (211 aa), 46% identity in aa 47 - 208" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461947.1" /db_xref="GI:16766332" /db_xref="GeneID:1254553" /translation="MKSHIMPGVALMVILFSGNIMAATNMTDNVTLNNDKISGQAWQA MRDIGMSRFELFNGRTQKAEQLAAQAEKLLNDDSTDWNLYVKSDKKAPVEGDHYIRIN SSITVAEDYLPAGQKNDAINKANQKMKEGDKKGTIEALKLAGVSVIENQELIPLQQTR KDVTTALSLMNEGKYYQAGLLLKSAQDGIVVDSQSVQESPTHSVQHDAAH" regulatory complement(3193072..3193077) /regulatory_class="ribosome_binding_site" /locus_tag="STM3030" /note="putative RBS for STM3030; RegulonDB:STMS1H003077" gene complement(3193108..3193651) /locus_tag="STM3031" /db_xref="GeneID:1254554" CDS complement(3193108..3193644) /locus_tag="STM3031" /note="similar to E. coli outer membrane protein X (AAC73901.1); Blastp hit to AAC73901.1 (171 aa), 29% identity in aa 1 - 171" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461948.1" /db_xref="GI:16766333" /db_xref="GeneID:1254554" /translation="MNKMLLAGSTGIVLLSAAASPVWADDNASTFSLGYAQSHTNHAG TLRGVRLANNYEMSPDWGLTTSFAWLNGSQRYSDESSNGRVTTRYYSLLAGPSWKINN QLSLYSQVGPVLLHQRDHGINESDSKVGYGYSAGVAYTPVSSVAITLGYEGADFDATH NSGSLNSNGFNLGVGYRF" regulatory complement(3193646..3193651) /regulatory_class="ribosome_binding_site" /locus_tag="STM3031" /note="putative RBS for STM3031; RegulonDB:STMS1H003078" mobile_element complement(3194217..3194925) /mobile_element_type="insertion sequence:IS200_4" gene complement(3194324..3194788) /gene="tnpA_4" /locus_tag="STM3032" /db_xref="GeneID:1254555" CDS complement(3194324..3194782) /gene="tnpA_4" /locus_tag="STM3032" /note="transposase for insertion sequence element is200 (SW:T200_SALTY)" /codon_start=1 /transl_table=11 /product="IS200 family transposase" /protein_id="NP_461949.1" /db_xref="GI:16766334" /db_xref="GeneID:1254555" /translation="MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKL CEWKNVRILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRN REFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTGRK" regulatory complement(3194783..3194788) /regulatory_class="ribosome_binding_site" /gene="tnpA_4" /locus_tag="STM3032" /note="putative RBS for tnpA_4; RegulonDB:STMS1H003079" gene complement(3195162..3195568) /locus_tag="STM3033" /db_xref="GeneID:1254556" CDS complement(3195162..3195560) /locus_tag="STM3033" /note="contains PIN domain" /codon_start=1 /transl_table=11 /product="VapC toxin family PIN domain ribonuclease" /protein_id="NP_461950.1" /db_xref="GI:16766335" /db_xref="GeneID:1254556" /translation="MLKFMLDTNTCIFTIKNKPEHIRERFNLNTSRMCISSITLMELI YGAEKSLAPERNLAVVEGFISRLEVLDYDTQAAIHTGQIRAELARKGTPVGPYDQMIA GHAGSRGLVVVTNNLREFERIPGIRIEDWC" gene complement(3195560..3195794) /locus_tag="STM3034" /db_xref="GeneID:1254557" CDS complement(3195560..3195787) /locus_tag="STM3034" /codon_start=1 /transl_table=11 /product="antitoxin" /protein_id="NP_461951.1" /db_xref="GI:16766336" /db_xref="GeneID:1254557" /translation="MHTTLFFSNRTQAVRLPKSISFPEDVKHVEIIAVGRSRIITPVG ESWDSWFDGEGASTDFMSTREQPAVQEREGF" regulatory complement(3195563..3195568) /regulatory_class="ribosome_binding_site" /locus_tag="STM3034" /note="putative RBS for STM3033; RegulonDB:STMS1H003080" regulatory complement(3195789..3195794) /regulatory_class="ribosome_binding_site" /locus_tag="STM3034" /note="putative RBS for STM3034; RegulonDB:STMS1H003081" gene 3195957..3196215 /locus_tag="STM3035" /db_xref="GeneID:2673722" regulatory 3195957..3195962 /regulatory_class="ribosome_binding_site" /locus_tag="STM3035" /note="putative RBS for STM3035; RegulonDB:STMS1H003082" CDS 3195964..3196215 /locus_tag="STM3035" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_449411.1" /db_xref="GI:1109557731" /db_xref="GeneID:2673722" /translation="MHKKHMCPWLLPGLLGLARCAPVPHTYAAIIEAGFYPEGTDLQL VLKIIETARQEIRLMDYSFTSWEVVRFEHSVSTKFSMSK" gene 3196483..3197296 /locus_tag="STM3036" /db_xref="GeneID:1254559" regulatory 3196483..3196488 /regulatory_class="ribosome_binding_site" /locus_tag="STM3036" /note="putative RBS for STM3036; RegulonDB:STMS1H003083" CDS 3196490..3197296 /locus_tag="STM3036" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461953.1" /db_xref="GI:16766338" /db_xref="GeneID:1254559" /translation="MIMKVNAWTILLMSAHLTACAVPGTEKYQTSMDSVTAEKISRII QSDVIPYKGENHGEVISRVSSAFLGTPYQADTLIGGPGIPEVLVANFNGVDCFTLADY VEALARSDNQKSFLHNLARTRYAAGKVAYLSRRHFFSDWFAAAPRNARDVTPDISPDY VVVDKQLNHKPDGGEYIPGLGIHPRKINYIPGRAINQQVMNHLKNGDYIGVYSPLDGL DVSHVGIVVRHDEQVWFRNASSLAANRKVVDTPFMEYMHSRPGIVVLRAE" gene complement(3197431..3197501) /gene="glyU" /locus_tag="STM3037" /db_xref="GeneID:1254560" tRNA complement(3197431..3197501) /gene="glyU" /locus_tag="STM3037" /product="tRNA-Gly" /db_xref="GeneID:1254560" gene complement(3197581..3198339) /locus_tag="STM3038" /db_xref="GeneID:1254561" CDS complement(3197581..3198339) /locus_tag="STM3038" /note="similar to E. coli putative lipoprotein (AAC75903.1); Blastp hit to AAC75903.1 (259 aa), 84% identity in aa 8 - 259" /codon_start=1 /transl_table=11 /product="putative metalloendopeptidase" /protein_id="NP_461954.1" /db_xref="GI:16766339" /db_xref="GeneID:1254561" /translation="MVLSAGRLNKNSLGIAVLLCTGLLLAGCSSNSGSGTYSGSVYTV KRGDTLYRISRATGTSVKELARLNGISPPYTIEVGQRIKVRGSAKSSTSTRKTSNKTA TKTAAVRPSSSVPKSSWPPVGQRCWVWPANGKVILPYSTAEGGNKGIDIAGARGTPVY AAGAGKVVYVGNQLRGYGNLIMIKHNEDYITAYAHNDTMLVNNGQSVKAGQKIATMGS TDAASVRLHFQIRYRATAIDPLRYLPPQGSKPKC" gene 3198593..3199149 /gene="idi" /locus_tag="STM3039" /db_xref="GeneID:1254562" regulatory 3198593..3198598 /regulatory_class="ribosome_binding_site" /gene="idi" /locus_tag="STM3039" /note="putative RBS for idi; RegulonDB:STMS1H003084" CDS 3198604..3199149 /gene="idi" /locus_tag="STM3039" /EC_number="5.3.3.2" /note="similar to E. coli putative enzyme (AAC75927.1); Blastp hit to AAC75927.1 (182 aa), 70% identity in aa 1 - 180" /codon_start=1 /transl_table=11 /product="isopentenyl-diphosphate delta-isomerase" /protein_id="NP_461955.1" /db_xref="GI:16766340" /db_xref="GeneID:1254562" /translation="MTEEHVVLLDEQDKPSGTLEKYAAHTLNTPLHLAFSCWLFNEDG QLLVTRRSLSKKAWPGVWTNSVCGHPQQGETTEEAIIRRCRFELGVEITDLTPVYPHF SYRATDPNGIVENEVCPVFAARATSVLQVNSEEVMDYQWSEFKSVWKSLLATPWAFSP WMVMQASDEQARERLLNYCQR" gene complement(3199225..3200753) /gene="lysS" /locus_tag="STM3040" /db_xref="GeneID:1254563" CDS complement(3199225..3200742) /gene="lysS" /locus_tag="STM3040" /EC_number="6.1.1.6" /note="similar to E. coli lysine tRNA synthetase, constitutive; suppressor of ColE1 mutation in primer RNA (AAC75928.1); Blastp hit to AAC75928.1 (505 aa), 95% identity in aa 1 - 505" /codon_start=1 /transl_table=11 /product="lysine--tRNA ligase" /protein_id="NP_461956.1" /db_xref="GI:16766341" /db_xref="GeneID:1254563" /translation="MSEQNAQGADEVVDLNNEMKARREKLAALREQGIPFPNDFRRDR TSDQLHAEFDAKEAEELEALNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARD DLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGL QDQEARYRQRYLDLISNDESRNTFKTRSKILAGIRQFMVARGFMEVETPMMQVIPGGA SARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFT MMELYMAYADYKDLIELTESLFRTLAQDVLGTTQVPYGDEVFDFGKPFEKLTMREAIK KYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFDEVAEAHLIQPTFITE YPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVNAKAAG DDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAMRPVK" regulatory complement(3200748..3200753) /regulatory_class="ribosome_binding_site" /gene="lysS" /locus_tag="STM3040" /note="putative RBS for lysS; RegulonDB:STMS1H003085" gene complement(3200752..3201633) /gene="prfB" /locus_tag="STM3041" /db_xref="GeneID:1254564" CDS complement(3200752..3201633) /gene="prfB" /locus_tag="STM3041" /note="peptide chain release factor 2 (RF-2). (SW:RF2_SALTY)" /codon_start=1 /transl_table=11 /product="peptide chain release factor RF-2" /protein_id="NP_461957.3" /db_xref="GI:1109557732" /db_xref="GeneID:1254564" /translation="MTQGLDDVSGLLELAVEADDEETFNEAVAELNTLEEKLAQLEFR RMFSGEYDSADCYLDIQAGSGGTEAQDWASMLLRMYLRWAEARGFKTEVIEESEGEVA GIKSATIKISGEYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDI DINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQ MKAKLYELEMQKKNAEKQAMEDTKSDIGWGSQIRSYVLDDSRIKDLRTGVETRNTQAV LDGSLDQFIEASLKAGL" gene complement(3201955..3203704) /gene="recJ" /locus_tag="STM3042" /db_xref="GeneID:1254565" CDS complement(3201955..3203688) /gene="recJ" /locus_tag="STM3042" /EC_number="3.1.-.-" /note="5' --> 3' specific; Mg dependent; single-stranded-DNA-specific exonuclease RECJ. (SW:RECJ_SALTY)" /codon_start=1 /transl_table=11 /product="single-stranded-DNA-specific exonuclease RecJ" /protein_id="NP_461958.1" /db_xref="GI:16766343" /db_xref="GeneID:1254565" /translation="MKQQRQLRRREADETAELPADLPPLLRRLYASRGVRSARELERS VKGMLPWQQLSGIDNAVEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGCDN ISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTVDNGISSHAGVAHAKTLGIPVIVTD HHLPGDTLPDAEAIINPNLRDCEFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERNIA PPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIRAGKCRPGIKALLEISNRDPQ QLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEARVLASELDALNQTRKEIEQ GMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG DGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLSLEEHKFEQFQQRFG ELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFPEPLFDGRFRLLQ QRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPDNGVREVELAYKLDINEFRGNRS LQIIIDDIWPL" gene complement(3203694..3204423) /gene="dsbC" /locus_tag="STM3043" /db_xref="GeneID:1254566" CDS complement(3203694..3204407) /gene="dsbC" /locus_tag="STM3043" /EC_number="5.3.4.1" /note="thiol:disulfide interchange protein DSBC precursor. (SW:DSBC_SALTY)" /codon_start=1 /transl_table=11 /product="bifunctional protein-disulfide isomerase/oxidoreductase DsbC" /protein_id="NP_461959.1" /db_xref="GI:16766344" /db_xref="GeneID:1254566" /translation="MKKRFMMFTLLAAVFSGVAHADDAAIRQSLAKLGVQSTEIQASP VAGMKTVLTHSGVLYVTDDGKHIIQGPMYDVSGAHPVNVTNKLLMSQLNALEKEMIVY KAPDEKHVITVFTDITCGYCHKLHEEMKDYNALGITVRYLAFPRQGLESQAEQDMKSI WCAKDKNKAFDDAMAGKGVKPASCDVNIADHYALGVQLGVSGTPAIVLSNGYVVPGYQ GPKEMKAFLDEHQKQTSGK" regulatory complement(3203699..3203704) /regulatory_class="ribosome_binding_site" /gene="dsbC" /locus_tag="STM3043" /note="putative RBS for recJ; RegulonDB:STMS1H003086" regulatory complement(3204418..3204423) /regulatory_class="ribosome_binding_site" /gene="dsbC" /locus_tag="STM3043" /note="putative RBS for dsbC; RegulonDB:STMS1H003087" gene complement(3204431..3205339) /gene="xerD" /locus_tag="STM3044" /db_xref="GeneID:1254567" CDS complement(3204431..3205327) /gene="xerD" /locus_tag="STM3044" /note="integrase/recombinase XERD. (SW:XERD_SALTY)" /codon_start=1 /transl_table=11 /product="site-specific tyrosine recombinase XerD" /protein_id="NP_461960.1" /db_xref="GI:16766345" /db_xref="GeneID:1254567" /translation="MEQDLARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRG KTLATAQADDLQTLLAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLAS PKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI SLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQM TRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTT QIYTHVATERLRQLHQQHHPRA" regulatory complement(3205334..3205339) /regulatory_class="ribosome_binding_site" /gene="xerD" /locus_tag="STM3044" /note="putative RBS for xerD; RegulonDB:STMS1H003088" gene 3205420..3205961 /gene="fldB" /locus_tag="STM3045" /db_xref="GeneID:1254568" regulatory 3205420..3205425 /regulatory_class="ribosome_binding_site" /gene="fldB" /locus_tag="STM3045" /note="putative RBS for fldB; RegulonDB:STMS1H003089" CDS 3205440..3205961 /gene="fldB" /locus_tag="STM3045" /note="flavodoxin 2. (SW:FLAW_SALTY)" /codon_start=1 /transl_table=11 /product="flavodoxin FldB" /protein_id="NP_461961.1" /db_xref="GI:16766346" /db_xref="GeneID:1254568" /translation="MNMGLFYGSSTCYTEMAAEKIRDILGPELVTLHNLKDDAPALME QYDVLILGIPTWDFGEIQEDWEAVWEQLDDLNLEGKIVALYGMGDQLGYGEWFLDALG MLHDKLALKGVKFVGYWPTEGYEFTSNKPVIADGQLFVGLALDETNQYDLSDERIQTW CEQILGEMAEHYA" gene complement(3206014..3206441) /gene="ygfX" /locus_tag="STM3046" /db_xref="GeneID:1254569" CDS complement(3206014..3206427) /gene="ygfX" /locus_tag="STM3046" /note="similar to E. coli orf, hypothetical protein (AAC75934.1); Blastp hit to AAC75934.1 (135 aa), 83% identity in aa 1 - 131" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461962.1" /db_xref="GI:16766347" /db_xref="GeneID:1254569" /translation="MVLWQSDLRVSWRAQWISLLIHGLVAAVILLMPWPLSYTPLWMI LLSLVVFDCVRSQRRINTCQGEIKLLMDGRLRWQGQDWTLLRPPWLLKSGMVLRLRAE SGRHQHLWLAADSMEEAEWRELRRILLQQPISGQH" gene complement(3206408..3206684) /gene="ygfY" /locus_tag="STM3047" /db_xref="GeneID:1254570" CDS complement(3206408..3206674) /gene="ygfY" /locus_tag="STM3047" /note="similar to E. coli orf, hypothetical protein (AAC75935.1); Blastp hit to AAC75935.1 (88 aa), 93% identity in aa 1 - 88" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461963.1" /db_xref="GI:16766348" /db_xref="GeneID:1254570" /translation="MDIHNKARIHWACRRGMRELDISIMPFFEHEYDSLSDEEKRIFV RLLQSDDPDLFNWLMNHGKPADAELEQMVRLIQTRNRERGPVAI" regulatory complement(3206436..3206441) /regulatory_class="ribosome_binding_site" /gene="ygfY" /locus_tag="STM3047" /note="putative RBS for ygfX; RegulonDB:STMS1H003090" regulatory complement(3206679..3206684) /regulatory_class="ribosome_binding_site" /gene="ygfY" /locus_tag="STM3047" /note="putative RBS for ygfY; RegulonDB:STMS1H003091" gene 3206911..3207904 /gene="ygfZ" /locus_tag="STM3048" /db_xref="GeneID:1254571" regulatory 3206911..3206916 /regulatory_class="ribosome_binding_site" /gene="ygfZ" /locus_tag="STM3048" /note="putative RBS for ygfZ; RegulonDB:STMS1H003092" CDS 3206924..3207904 /gene="ygfZ" /locus_tag="STM3048" /note="similar to E. coli orf, hypothetical protein (AAC75936.1); Blastp hit to AAC75936.1 (326 aa), 85% identity in aa 1 - 326" /codon_start=1 /transl_table=11 /product="tRNA-modifying protein YgfZ" /protein_id="NP_461964.1" /db_xref="GI:16766349" /db_xref="GeneID:1254571" /translation="MAFISFPPRHPSSSARLPLTLIALDDWALSTITGVDSEKYIQGQ VTADVSQMTEQQHLLAAHCDAKGKMWSTLRLFRERDGFAWIERRSVLEAQLTELKKYA VFSKVVIAPDDERVLLGVAGFQARAALANVFSELPNSENQVVRDGASTLLWFEHPAER FLLVTDVATANMLTEKLHGEAELNNSQQWLALDIEAGIPVIDAANSGQFIPQATNLQA LGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGKASRVPEAGEDLELQMGENWRRT GAILAATQLDDGQLLVQAVMNNDLEAESVFRVRDDANTLHIVPLPYSLEE" gene complement(3208020..3208691) /gene="yqfA" /locus_tag="STM3049" /db_xref="GeneID:1254572" CDS complement(3208020..3208679) /gene="yqfA" /locus_tag="STM3049" /note="similar to E. coli putative oxidoreductase (AAC75937.1); Blastp hit to AAC75937.1 (219 aa), 91% identity in aa 1 - 219" /codon_start=1 /transl_table=11 /product="hemolysin III family protein" /protein_id="NP_461965.1" /db_xref="GI:16766350" /db_xref="GeneID:1254572" /translation="MVQKPLMTQGYSLAEEIANSISHGIGLVFGIVGLVLLLVQAVEA NAGMTAIASYSLYGGSMILLFLASTLYHAIPHQRAKIWLKKFDHCAIYLLIAGTYTPF LLVGLDSPLARGLMIVIWSLALFGILFKLTIAHRFKVLSLVTYLAMGWLSLIVVYQLA IKLAIGGVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYVGQ A" regulatory complement(3208686..3208691) /regulatory_class="ribosome_binding_site" /gene="yqfA" /locus_tag="STM3049" /note="putative RBS for yqfA; RegulonDB:STMS1H003093" gene complement(3208843..3209169) /gene="yqfB" /locus_tag="STM3050" /db_xref="GeneID:1254573" CDS complement(3208843..3209154) /gene="yqfB" /locus_tag="STM3050" /note="similar to E. coli orf, hypothetical protein (AAC75938.1); Blastp hit to AAC75938.1 (103 aa), 88% identity in aa 1 - 103" /codon_start=1 /transl_table=11 /product="ASCH domain-containing protein" /protein_id="NP_461966.1" /db_xref="GI:16766351" /db_xref="GeneID:1254573" /translation="MQPNDITFFQRFQNDILAGRKTITIRDASESHFKAGDVLRVGRF EDDGYFCTIEVTGTSTVTLDTLNEKHAQQENMSLDELKRVIAEIYPNQTQFYVIDFKC L" regulatory complement(3209164..3209169) /regulatory_class="ribosome_binding_site" /gene="yqfB" /locus_tag="STM3050" /note="putative RBS for yqfB; RegulonDB:STMS1H003094" gene 3209313..3210746 /gene="bglA" /locus_tag="STM3051" /db_xref="GeneID:1254574" CDS 3209313..3210746 /gene="bglA" /locus_tag="STM3051" /EC_number="3.2.1.86" /note="similar to E. coli 6-phospho-beta-glucosidase A; cryptic (AAC75939.1); Blastp hit to AAC75939.1 (479 aa), 95% identity in aa 3 - 479" /codon_start=1 /transl_table=11 /product="6-phospho-beta-glucosidase" /protein_id="NP_461967.1" /db_xref="GI:16766352" /db_xref="GeneID:1254574" /translation="MRKLTLPKDFLWGGAVAAHQVEGGWNKDGKGPSICDVLTGGAHG VPREITQNVVAGKYYPNHEAVDFYGHYKEDIRLFAEMGFKCFRTSIAWTRIFPNGDES QPNEAGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQHYGGWTNRKVVDFFVRFAE VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFV ASALAVKAARRINPQMKVGCMLAMVALYPFSCKPEDVMFAQESMRERYVFTDVQLRGY YPSYVLNEWERRGFNIKMEDGDLEVLREGTCDYLGFSYYMTNAVKAEGGSGDAISGFE GSVPNPYVKASDWGWQIDPVGLRYSLCELYERYQKPLFIVENGFGAYDKVEEDGSIND DYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDD GTGDMSRSRKKSFNWYKEVIASNGEKL" gene complement(3210794..3211694) /locus_tag="STM3052" /db_xref="GeneID:1254575" CDS complement(3210794..3211687) /locus_tag="STM3052" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461968.1" /db_xref="GI:16766353" /db_xref="GeneID:1254575" /translation="MKRFIFLPLMTYFLLMNAMAANGENNPSNLLGAPVNTAISGGSV LPEGKLLTAMNSSFRDKDHQIEGHGSPDVYSQIWLLKIRYGLTDRLELSTVGSYINNK RDNLSPEHIEGMGDQSVGVNYALMSQRRGDPFWVTVGGAVLLPTGQDGDNHLPGNSAW GGRVTLTLTKLFTPNIKGDMGFVYQGPFERGNQDVKRGNEFQWNTQVRYMFSDLPLDL GLESAYSNNASGTKKLSNGSVINNHSGTTEWVVGPSFNIAVDSLKLWFGAGAFFPVMQ EAKSPTKMEDVRWEFKIGKTW" regulatory complement(3211689..3211694) /regulatory_class="ribosome_binding_site" /locus_tag="STM3052" /note="putative RBS for STM3052; RegulonDB:STMS1H003095" gene complement(3212143..3215031) /gene="gcvP" /locus_tag="STM3053" /db_xref="GeneID:1254576" CDS complement(3212143..3215016) /gene="gcvP" /locus_tag="STM3053" /EC_number="1.4.4.2" /note="glycine decarboxylase; similar to E. coli glycine decarboxylase, P protein of glycine cleavage system (AAC75941.1); Blastp hit to AAC75941.1 (957 aa), 96% identity in aa 1 - 957" /codon_start=1 /transl_table=11 /product="glycine cleavage system protein P" /protein_id="NP_461969.1" /db_xref="GI:16766354" /db_xref="GeneID:1254576" /translation="MTQTLSQLENRGAFIERHIGPDAAQQQEMLNAVGAESLNALTGQ IVPKDIQLATPPQVGEAATEYAALAELKAIAGRNKRFTSYIGMGYTAVQLPPVILRNM LENPGWYTAYTPYQPEVSQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAM AKRVSKLKNANRFFVASDVHPQTLDVVRTRAETFGFDVIVDDAAKALDHQDVFGVLLQ QVGTTGEIHDYSALITELKSRKVVVSVAADFMALVLLTAPGKQGADIVFGSAQRFGVP MGYGGPHAAFFAAKDEFKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNI CTSQVLLANIASLYAVYHGPVGLKRIANRIHRLTDILAAGLQQKGLKLRHAHYFDTLC VEVADKAAVLARAEAAEINLRSDIHNAVGITLDETTTRENVAQLFNVLLGDSHGLNIE TLDKDVALDSRSIQQSMLRDDAILTHPVFNRYHSETEMMRYMHSLERKDLALNQAMIP LGSCTMKLNAAAEMIPITWPEFAELHPFCPPEQAEGYHQMISQLSDWLVKLTGYDAVC MQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPASAHGTNPASAHMAGMQVVVVAC DKNGNIDLDDLRAKAEQHAANLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDG ANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVV QIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKQASQVAILNANYIASRLKD AYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFHAPTMSFPVAGTLM VEPTESEGKAELDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAEWAHP YSREVAVFPAGVADKYWPTVKRLDDVYGDRNLFCSCVPISDYQ" regulatory complement(3215026..3215031) /regulatory_class="ribosome_binding_site" /gene="gcvP" /locus_tag="STM3053" /note="putative RBS for gcvP; RegulonDB:STMS1H003096" gene complement(3215179..3215582) /gene="gcvH" /locus_tag="STM3054" /db_xref="GeneID:1254577" CDS complement(3215179..3215568) /gene="gcvH" /locus_tag="STM3054" /note="carrier of aminomethyl moiety via covalently bound lipoyl cofactor; similar to E. coli in glycine cleavage complex, carrier of aminomethyl moiety via covalently bound lipoyl cofactor (AAC75942.1); Blastp hit to AAC75942.1 (129 aa), 99% identity in aa 1 - 129" /codon_start=1 /transl_table=11 /product="glycine cleavage system protein H" /protein_id="NP_461970.1" /db_xref="GI:16766355" /db_xref="GeneID:1254577" /translation="MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVD LPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYTGGWI FKIKASDESELESLLDATAYEALLEDE" regulatory complement(3215577..3215582) /regulatory_class="ribosome_binding_site" /gene="gcvH" /locus_tag="STM3054" /note="putative RBS for gcvH; RegulonDB:STMS1H003097" gene complement(3215594..3216838) /gene="gcvT" /locus_tag="STM3055" /db_xref="GeneID:1254578" CDS complement(3215594..3216688) /gene="gcvT" /locus_tag="STM3055" /EC_number="2.1.2.10" /note="aminomethyltransferase; tetrahydrofolate-dependent; similar to E. coli aminomethyltransferase (T protein; tetrahydrofolate-dependent) of glycine cleavage system (AAC75943.1); Blastp hit to AAC75943.1 (364 aa), 94% identity in aa 1 - 364" /codon_start=1 /transl_table=11 /product="glycine cleavage system protein T" /protein_id="NP_461971.1" /db_xref="GI:16766356" /db_xref="GeneID:1254578" /translation="MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQLDEHHAVRTDA GMFDVSHMTIVDLHGSRTREFLRYLLANDVAKLTKTGKALYSGMLNASGGVIDDLIVY YFTEDFFRLVVNSATREKDLSWITQHAEPYAIDITVRDDLSLIAVQGPNAQEKAATLF TDQQRHAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAMPNEKAADFWRALVEAGVKP CGLGARDTLRLEAGMNLYGQEMDEGISPLAANMGWTIAWEPADRDFIGREALEMQREK GHEQLVGLVMTEKGVLRNELPVRFTDAQGNQQEGIITSGTFSPTLGYSIALARVPAGI GETAIVQIRNREMPVKVTKPVFVRNGKAVA" regulatory complement(3216692..3216697) /regulatory_class="ribosome_binding_site" /gene="gcvT" /locus_tag="STM3055" /note="putative RBS for gcvT; RegulonDB:STMS1H003098" protein_bind complement(3216708..3216738) /gene="gcvT" /locus_tag="STM3055" /note="putative binding site for GcvA, RegulonDB: STMS1H000200" /bound_moiety="GcvA" protein_bind complement(3216734..3216764) /gene="gcvT" /locus_tag="STM3055" /note="putative binding site for GcvA, RegulonDB: STMS1H000199" /bound_moiety="GcvA" protein_bind complement(3216778..3216794) /gene="gcvT" /locus_tag="STM3055" /note="putative binding site for PurR, RegulonDB: STMS1H000355" /bound_moiety="PurR" regulatory complement(3216811..3216819) /regulatory_class="minus_10_signal" /gene="gcvT" /locus_tag="STM3055" /note="putative -10_signal for gcvT; RegulonDB:STMLTH004572" regulatory complement(3216830..3216838) /regulatory_class="minus_35_signal" /gene="gcvT" /locus_tag="STM3055" /note="putative -35_signal for gcvT; RegulonDB:STMLTH004572" protein_bind complement(3216916..3216946) /note="putative binding site for GcvA, RegulonDB: STMS1H000201" /bound_moiety="GcvA" protein_bind complement(3216938..3216952) /note="putative binding site for Lrp, RegulonDB: STMS1H000251" /bound_moiety="Lrp" gene complement(3217143..3218357) /gene="visC" /locus_tag="STM3056" /db_xref="GeneID:1254579" CDS complement(3217143..3218345) /gene="visC" /locus_tag="STM3056" /note="similar to E. coli orf, hypothetical protein (AAC75944.1); Blastp hit to AAC75944.1 (400 aa), 87% identity in aa 1 - 400" /codon_start=1 /transl_table=11 /product="FAD-dependent 2-octaprenylphenol hydroxylase" /protein_id="NP_461972.1" /db_xref="GI:16766357" /db_xref="GeneID:1254579" /translation="MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLDHVVPQPLANDA PPQLRVSAINAASEKLLTRLGVWSNIVARRASCYHGMEVWDKDSFGRITFDDASMGYS HLGHIVENSVIHYALWQKAQQAADITLMAPAELQQVAWGENDAFLTLKDGAMLTARLV IAADGANSWLRNKADIPLTFWDYRHHALVATIRTEEPHGAVARQVFHGEGILAFLPLS DPHLCSIVWSLSPQDAERMQQSGDEAFNQALTIAFDNRLGLCRLESERQVFPLTGRYA RQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELVDDLRRLQRQGKDIGQHLYLRR YERSRKHSAAMMLAGMQGFRDLFAGENPAKKLLRDIGLKLADTLPGVKPQLLRQAMGL NDLPQWLR" regulatory complement(3218352..3218357) /regulatory_class="ribosome_binding_site" /gene="visC" /locus_tag="STM3056" /note="putative RBS for visC; RegulonDB:STMS1H003099" gene complement(3218471..3219663) /gene="ubiH" /locus_tag="STM3057" /db_xref="GeneID:1254580" CDS complement(3218471..3219649) /gene="ubiH" /locus_tag="STM3057" /EC_number="1.14.13.-" /note="similar to E. coli 2-octaprenyl-6-methoxyphenol--> 2-octaprenyl-6-methoxy-1, 4-benzoquinone (AAC75945.1); Blastp hit to AAC75945.1 (392 aa), 79% identity in aa 1 - 392" /codon_start=1 /transl_table=11 /product="2-octaprenyl-6-methoxyphenyl hydroxylase" /protein_id="NP_461973.2" /db_xref="GI:1109557733" /db_xref="GeneID:1254580" /translation="MSVIIVGGGMAGATLALAISQFSHGTLPVHLIEAKAPEADGHPG FDARAIALAAGTCQQLARIGVWQAISDCATAINTVHVSDRGHAGFVTLDAQDYSLAAL GHVAELHDIGLRLFALLRKAPGVTLHCPERVASVSRTQQQVNVTLENGNVIAGSVLVA ANGTHSALASACGVDWHQEPYEQLAVIANVATAIPHQGRAFERFTPNGPLAMLPMSHG RCSLVWCHPLDQRDEVLSWSDAQFCHALQAAFGWRLGRITQAGKRSAYPLALTTAAKV FSHRTVVVGNAAQTLHPIAGQGFNLGLRDVMSLAETLVAAQDAGEDIGAWHVLSRYQQ RRQVDRDTTIGVTNGLVHLFANRWAPLVIGRNIGLMAMELLPPARDALAQRTLGWVAR " gene complement(3219646..3220976) /gene="pepP" /locus_tag="STM3058" /db_xref="GeneID:1254581" CDS complement(3219646..3220962) /gene="pepP" /locus_tag="STM3058" /EC_number="3.4.11.9" /note="similar to E. coli proline aminopeptidase P II (AAC75946.1); Blastp hit to AAC75946.1 (441 aa), 91% identity in aa 4 - 441" /codon_start=1 /transl_table=11 /product="Xaa-Pro aminopeptidase" /protein_id="NP_461974.1" /db_xref="GI:16766359" /db_xref="GeneID:1254581" /translation="MTQQEYQRRRQALLAQMQPGSAALIFAAPEATRSADSEYPYRQS SDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGV DRALAFSEINQQLFQLLNGLDVVYHAQGEYAYADEIVLAALEKLRKGSRQNLTAPATM TDWRPIVHEMRLFKSPEEIAVLRRAGEISALAHIRAMEKCRPGMFEYQLEGEIHHEFN RHGARYPSYNTIVGSGENGCILHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPV NGKFTLAQREIYDIVLESLETSLRLFRPGTSIQEVTGEVVRIMITGLVKLGILQGEVD QLIAENAHRPFFMHGLSHWLGLDVHDVGVYGPDRSRILEPGMVLTVEPGLYIAPDADV PEAYRGIGVRIEDDIVITETGNENLTAGVVKKADDIEALMAAARQQ" regulatory complement(3219658..3219663) /regulatory_class="ribosome_binding_site" /gene="ubiH" /locus_tag="STM3057" /note="putative RBS for ubiH; RegulonDB:STMS1H003101" regulatory complement(3220971..3220976) /regulatory_class="ribosome_binding_site" /gene="pepP" /locus_tag="STM3058" /note="putative RBS for pepP; RegulonDB:STMS1H003102" gene complement(3220988..3221572) /gene="ygfB" /locus_tag="STM3059" /db_xref="GeneID:1254582" CDS complement(3220988..3221572) /gene="ygfB" /locus_tag="STM3059" /note="similar to E. coli orf, hypothetical protein (AAC75947.1); Blastp hit to AAC75947.1 (194 aa), 93% identity in aa 1 - 194" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461975.3" /db_xref="GI:1109557734" /db_xref="GeneID:1254582" /translation="MLMSIQNEMPGYNEMNRFLNQQGAGLTPAEMHGLISGMICGGNN DSSWQPLLHDLTNEGLAFGHELAQALRKMHAATSDALEDDGFLFQLYLPEGDDVSVFD RADALAGWVNHFLLGLGVTQPKLDKVTGETGEAIDDLRNIAQLGYDESEDQEELEMSL EEIIEYVRVAALLCHDTFTRQQPTAPEVRKPTLH" gene 3221721..3222062 /gene="ygfE" /locus_tag="STM3060" /db_xref="GeneID:1254583" regulatory 3221721..3221726 /regulatory_class="ribosome_binding_site" /gene="ygfE" /locus_tag="STM3060" /note="putative RBS for ygfE; RegulonDB:STMS1H003103" CDS 3221733..3222062 /gene="ygfE" /locus_tag="STM3060" /note="similar to E. coli orf, hypothetical protein (AAC75948.1); Blastp hit to AAC75948.1 (109 aa), 96% identity in aa 1 - 109" /codon_start=1 /transl_table=11 /product="Z-ring-associated protein" /protein_id="NP_461976.1" /db_xref="GI:16766361" /db_xref="GeneID:1254583" /translation="MSAQPVDIQIFGRSLRVNCPPDQRDALNQAADDLNQRLQDLKVR TRVTNTEQLVFIAALNISYELTQEKAKTRDYAASMEQRIRMLQQTIEQALLDQGRITE KTGQNFE" gene 3222342..3222904 /gene="ygfA" /locus_tag="STM3061" /db_xref="GeneID:1254584" regulatory 3222342..3222347 /regulatory_class="ribosome_binding_site" /gene="ygfA" /locus_tag="STM3061" /note="putative RBS for ygfA; RegulonDB:STMS1H003104" CDS 3222356..3222904 /gene="ygfA" /locus_tag="STM3061" /note="similar to E. coli putative ligase (AAC75949.1); Blastp hit to AAC75949.1 (182 aa), 86% identity in aa 1 - 182" /codon_start=1 /transl_table=11 /product="putative ligase" /protein_id="NP_461977.1" /db_xref="GI:16766362" /db_xref="GeneID:1254584" /translation="MIRQRRRALTPEQQRRFGQQAAARMLSFPPVVMAHTVAVFLSFD GELDTQPLIEQLWRAGKRVYLPVLHPFSPGNLLFLHYYPQSVLVTNRLKIQEPRLDVR DVLPLAKLDVLVTPLVAFDEDGQRLGMGGGFYDRTLQNWQQHKILPVGYAHDCQLVEK LPVKEWDIPLPAVVTPSKIWEW" gene complement(3223285..3224530) /gene="serA" /locus_tag="STM3062" /db_xref="GeneID:1254585" CDS complement(3223285..3224517) /gene="serA" /locus_tag="STM3062" /EC_number="1.1.1.95" /note="similar to E. coli D-3-phosphoglycerate dehydrogenase (AAC75950.1); Blastp hit to AAC75950.1 (410 aa), 96% identity in aa 1 - 410" /codon_start=1 /transl_table=11 /product="D-3-phosphoglycerate dehydrogenase" /protein_id="NP_461978.1" /db_xref="GI:16766363" /db_xref="GeneID:1254585" /translation="MAKVSLEKDKIKFLLVEGVHQKALESLRAAGYTNIEYHKGALDA EQLKASIRDAHFIGLRSRTHLTEEVINAAEKLVAIGCFCIGTNQVDLNAAAKRGIPVF NAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYG HIGTQLGILAESLGMHVYFYDIENKLPLGNATQVQHLSELLNMSDVVSLHVPENASTK NMMGAKEIALMKPGSLLINAARGTVVDIPALCDALATKHLAGAAIDVFPTEPATNSDP FTSPLCEFDNVILTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPL HGGRRLMHIHENRPGVLTALNQIFAEQGVNIAAQYLQTSARMGYVVIDIEADGDVAEK ALLAMKAIPGTIRARLLY" regulatory complement(3224525..3224530) /regulatory_class="ribosome_binding_site" /gene="serA" /locus_tag="STM3062" /note="putative RBS for serA; RegulonDB:STMS1H003105" gene complement(3224783..3225457) /gene="rpiA" /locus_tag="STM3063" /db_xref="GeneID:1254586" CDS complement(3224783..3225442) /gene="rpiA" /locus_tag="STM3063" /EC_number="5.3.1.6" /note="similar to E. coli ribosephosphate isomerase, constitutive (AAC75951.1); Blastp hit to AAC75951.1 (219 aa), 98% identity in aa 1 - 219" /codon_start=1 /transl_table=11 /product="ribose 5-phosphate isomerase A" /protein_id="NP_461979.1" /db_xref="GI:16766364" /db_xref="GeneID:1254586" /translation="MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKG QIEGAVSSSDASTEKLKGLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTR EKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQNV VTDNGNVILDVYGMEILDPIALENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIV K" regulatory complement(3225452..3225457) /regulatory_class="ribosome_binding_site" /gene="rpiA" /locus_tag="STM3063" /note="putative RBS for rpiA; RegulonDB:STMS1H003106" gene 3225578..3226489 /gene="iciA" /locus_tag="STM3064" /db_xref="GeneID:1254587" regulatory 3225578..3225583 /regulatory_class="ribosome_binding_site" /gene="iciA" /locus_tag="STM3064" /note="putative RBS for iciA; RegulonDB:STMS1H003107" CDS 3225596..3226489 /gene="iciA" /locus_tag="STM3064" /note="LysR family; similar to E. coli replication initiation inhibitor, binds to 13-mers at oriC (AAC75953.1); Blastp hit to AAC75953.1 (297 aa), 97% identity in aa 1 - 297" /codon_start=1 /transl_table=11 /product="transcriptional regulator ArgP" /protein_id="NP_461980.1" /db_xref="GI:16766365" /db_xref="GeneID:1254587" /translation="MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLEN MFGQPLLVRTVPPRPTEQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNADSL ATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLG ALDYLFVASKPFAERYFPNGVTRSSLLKAPAVAFDHLDDMHQAFLQQNFDLPPGSVPC HIVNSSEAFVQLARQGTTCCMIPHLQIEKELESGELINLTPGLLQRRMLYWHRFAPES RMMRKVTDALLEYGHKVLRQD" gene complement(3226755..3227512) /gene="yggE" /locus_tag="STM3065" /db_xref="GeneID:1254588" CDS complement(3226755..3227501) /gene="yggE" /locus_tag="STM3065" /note="similar to E. coli putative actin (AAC75959.1); Blastp hit to AAC75959.1 (246 aa), 88% identity in aa 1 - 245" /codon_start=1 /transl_table=11 /product="oxidative stress defense protein" /protein_id="NP_461981.1" /db_xref="GI:16766366" /db_xref="GeneID:1254588" /translation="MKFKVMALAALVGLSAMSAQASELPEGPHIVTSGTASVDAVPDI ATLAIEVNVAAKDAATAKKQADERVAQYLSFLEQNQIAKKDISAANLRTQPDYDYQNG KSILKGYRAVRTVEVTLRQLDKLNSLLDGALKAGLNEIRSVSLGVAQPDAYKDKARKA AIDDAIHQAQALAAGFNSKLGPVYSVRYHVSNYQPSPVVRMMKAADAAPVSAQETYEQ PTIQFDDQVDVVFQLEPGTGQTSTTAASTQ" regulatory complement(3227507..3227512) /regulatory_class="ribosome_binding_site" /gene="yggE" /locus_tag="STM3065" /note="putative RBS for yggE; RegulonDB:STMS1H003108" gene complement(3227595..3228243) /gene="yggA" /locus_tag="STM3066" /db_xref="GeneID:1254589" CDS complement(3227595..3228230) /gene="yggA" /locus_tag="STM3066" /note="similar to E. coli orf, hypothetical protein (AAC75960.1); Blastp hit to AAC75960.1 (211 aa), 90% identity in aa 1 - 211" /codon_start=1 /transl_table=11 /product="arginine transporter" /protein_id="NP_461982.1" /db_xref="GI:16766367" /db_xref="GeneID:1254589" /translation="MISYYFQGFALGAAMILPLGPQNAFVMNQGIRRQYHLMIALLCA LSDLVLISAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGALKTAMSSNLELASAE VMKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQLAMEPKRWFALGTISASFLWF FGLALLAAWLAPRLRTAKAQRIINILVGVVMWLIAFQLAREGVAHMHALFN" regulatory complement(3228238..3228243) /regulatory_class="ribosome_binding_site" /gene="yggA" /locus_tag="STM3066" /note="putative RBS for yggA; RegulonDB:STMS1H003109" gene complement(3228430..3229302) /gene="yggB" /locus_tag="STM3067" /db_xref="GeneID:1254590" CDS complement(3228430..3229290) /gene="yggB" /locus_tag="STM3067" /note="involved in stability of MscS mechanosensitive channel; similar to E. coli putative transport protein (AAC75961.1); Blastp hit to AAC75961.1 (286 aa), 91% identity in aa 1 - 285" /codon_start=1 /transl_table=11 /product="mechanosensitive ion channel protein MscS" /protein_id="NP_461983.1" /db_xref="GI:16766368" /db_xref="GeneID:1254590" /translation="MEDLNVVDSINGAGTWLVRNQALLLSYAVNIVAAIAIIIIGLIV ARVISNTVNRLMRARHIDATVADFLSALVRYGVIAFTLIAALGRVGVQTASVIAVLGA AGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLNVQIFSTTMRAVDG KIIVIPNGKIIAGNIINYSREPVRRNEFIIGVAYDSDIDQVKQLLTTIIESDDRILKD REMTVRLNELGASSINFVVRVWSKSSDLQNVYWDVLERIKREFDAAGISFPYPQMDVN FKRVKDNAAE" regulatory complement(3229297..3229302) /regulatory_class="ribosome_binding_site" /gene="yggB" /locus_tag="STM3067" /note="putative RBS for yggB; RegulonDB:STMS1H003110" gene complement(3229517..3230610) /gene="fba" /locus_tag="STM3068" /db_xref="GeneID:1254591" CDS complement(3229517..3230596) /gene="fba" /locus_tag="STM3068" /EC_number="4.1.2.13" /note="similar to E. coli fructose-bisphosphate aldolase, class II (AAC75962.1); Blastp hit to AAC75962.1 (359 aa), 98% identity in aa 1 - 359" /codon_start=1 /transl_table=11 /product="class II fructose-bisphosphate aldolase" /protein_id="NP_461984.1" /db_xref="GI:16766369" /db_xref="GeneID:1254591" /translation="MSKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSIN AVLETAAKVKAPVIVQFSNGGASFIAGKGVKTDVPQGAAILGAISGAHHVHQMAEHYG VPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLHENIEICSK YLARMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFT IAASFGNVHGVYKPGNVVLTPTILRDSQDYVSKKHNLPHNSLNFVFHGGSGSTAQEIK DSVSYGVVKMNIDTDTQWATWEGVLNYYKENEAYLQGQLGNPKGEDQPNKKYYDPRVW LRAGQTSMIARLEKAFKELNAIDVL" regulatory complement(3230605..3230610) /regulatory_class="ribosome_binding_site" /gene="fba" /locus_tag="STM3068" /note="putative RBS for fba; RegulonDB:STMS1H003111" gene complement(3230698..3231872) /gene="pgk" /locus_tag="STM3069" /db_xref="GeneID:1254592" CDS complement(3230698..3231861) /gene="pgk" /locus_tag="STM3069" /EC_number="2.7.2.3" /note="similar to E. coli phosphoglycerate kinase (AAC75963.1); Blastp hit to AAC75963.1 (387 aa), 97% identity in aa 1 - 387" /codon_start=1 /transl_table=11 /product="phosphoglycerate kinase" /protein_id="NP_461985.1" /db_xref="GI:16766370" /db_xref="GeneID:1254592" /translation="MSVIKMTDLDLAGKRVFIRADLNVPVKEGKVTSDARIRASLPTI ELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDGVDVA EGELVVLENVRFNKGEKKDDEALSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADV ACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIA NTFVAAQGHSVGKSLYEADLVDEAKRLLTTCDIPVPTDVRVATEFSETAPATLKSVND VKEDEQILDIGDASAQQLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEERAKK" regulatory complement(3231867..3231872) /regulatory_class="ribosome_binding_site" /gene="pgk" /locus_tag="STM3069" /note="putative RBS for pgk; RegulonDB:STMS1H003112" gene complement(3231883..3233099) /gene="epd" /locus_tag="STM3070" /db_xref="GeneID:1254593" CDS complement(3231883..3232929) /gene="epd" /locus_tag="STM3070" /EC_number="1.2.1.-" /note="similar to E. coli D-erythrose 4-phosphate dehydrogenase (AAC75964.1); Blastp hit to AAC75964.1 (339 aa), 94% identity in aa 1 - 339" /codon_start=1 /transl_table=11 /product="erythrose-4-phosphate dehydrogenase" /protein_id="NP_461986.1" /db_xref="GI:16766371" /db_xref="GeneID:1254593" /translation="MTVRIAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGM AHLLKYDTSHGRFAWEVRHEREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGV YGNREHGEAHIAAGAKKVLFSHPGSNDLDATVVFGVNQNQLRAEHRIVSNASCTTNCI IPVIKLLDDAYGIESGTVTTIHSAMNDQQVIDAYHSDLRRTRAASQSIIPVDTKLAAG ITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIV DYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA AVGFRLDASASTKL" regulatory complement(3232934..3232939) /regulatory_class="ribosome_binding_site" /gene="epd" /locus_tag="STM3070" /note="putative RBS for epd; RegulonDB:STMS1H003113" regulatory complement(3233075..3233083) /regulatory_class="minus_10_signal" /gene="epd" /locus_tag="STM3070" /note="putative -10_signal for epd; RegulonDB:STMLTH004573" regulatory complement(3233091..3233099) /regulatory_class="minus_35_signal" /gene="epd" /locus_tag="STM3070" /note="putative -35_signal for epd; RegulonDB:STMLTH004573" protein_bind complement(3233120..3233140) /note="putative binding site for CRP, RegulonDB: STMS1H000116" /bound_moiety="CRP" gene 3233298..3233728 /locus_tag="STM3071" /db_xref="GeneID:1254594" regulatory 3233298..3233303 /regulatory_class="ribosome_binding_site" /locus_tag="STM3071" /note="putative RBS for STM3071; RegulonDB:STMS1H003114" CDS 3233303..3233728 /locus_tag="STM3071" /codon_start=1 /transl_table=11 /product="putative DNA-binding protein" /protein_id="NP_461987.1" /db_xref="GI:16766372" /db_xref="GeneID:1254594" /translation="MTVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAG CTGSLTDVALRYAGQEATTSLTGTFEVISLNGTLELTGEHLHLAVSDPYGVMLGGHMM PGCTVRTTLELVIGELPALTFSRQPCAISGYDELHISSR" gene 3233748..3234332 /locus_tag="STM3072" /db_xref="GeneID:1254595" regulatory 3233748..3233753 /regulatory_class="ribosome_binding_site" /locus_tag="STM3072" /note="putative RBS for STM3072; RegulonDB:STMS1H003115" CDS 3233754..3234332 /locus_tag="STM3072" /codon_start=1 /transl_table=11 /product="ECF transporter S component" /protein_id="NP_461988.1" /db_xref="GI:16766373" /db_xref="GeneID:1254595" /translation="MARRPFSSQSLVLIVIAIAINMIGGQLISMLKLPIFLDSIGTLI SAVLLGPFIGMLTGLLTNLLWGLLTDPIAAAFAPVAMVIGLVAGWLARAGWFRTLPKV IVSGVVITLAVTLVAVPLRTALFGGVTGSGADLFVAWMHSMGQNLVESVAITVIGANL VDKILTAIIVWVLLRQLPLRTTRHFPAMSAVR" gene 3234333..3235040 /locus_tag="STM3073" /db_xref="GeneID:1254596" CDS 3234333..3235040 /locus_tag="STM3073" /note="permease component CbiQ and related transporter" /codon_start=1 /transl_table=11 /product="cobalt ABC transporter permease" /protein_id="NP_461989.1" /db_xref="GI:16766374" /db_xref="GeneID:1254596" /translation="MHPFTSLTLWALAACTTLLLPAQTVLPVYSAAAFLCLLALKSTR RRAKYVAWLMLSLGFGLWLVHGGWLTEWISGQPRDPQRWVYAVTLWLRLLAIVSTSQL WMQYVPVQRFIRALFASRLPPGIAYLFAGPLLVVEQLKRQLTIVHEAQRARGVPLDEG WYQRLRAMPALIVPLTQNALNDLTIRGAALDMRGFRLHRARTTLWAPKDSVLQRVARY GMVLLILAEAGVWIWLR" gene 3235022..3235705 /locus_tag="STM3074" /db_xref="GeneID:1254597" regulatory 3235022..3235027 /regulatory_class="ribosome_binding_site" /locus_tag="STM3074" /note="putative RBS for STM3074; RegulonDB:STMS1H003116" CDS 3235028..3235705 /locus_tag="STM3074" /note="ATPase component; similar to E. coli ATP-binding component of putrescine transport system (AAC73942.1); Blastp hit to AAC73942.1 (404 aa), 38% identity in aa 74 - 207" /codon_start=1 /transl_table=11 /product="cobalt ABC transporter ATP-binding protein" /protein_id="NP_461990.1" /db_xref="GI:16766375" /db_xref="GeneID:1254597" /translation="MVTLEQFRYLPSDATRPPACFDFHYSTPGIVAIVGDNGSGKSTL AQLMAGWYPDYLPGDIDGTGLLLGVPIGRLPLVEQSPTIQLVQQSPYLQLSGCTFSVE EEVAFGPENLGLHEAEILRRIDEALTLTNCQSLRHRHPGTLSGGETQRVVIASALAMQ PRLLILDEAFSRLTSAATGMLLERLQQWALERHSLIVLFERNHFPFLTRCQRVWQLRD GALTPLC" gene 3235693..3236355 /locus_tag="STM3075" /db_xref="GeneID:1254598" regulatory 3235693..3235698 /regulatory_class="ribosome_binding_site" /locus_tag="STM3075" /note="putative RBS for STM3075; RegulonDB:STMS1H003117" CDS 3235699..3236355 /locus_tag="STM3075" /note="ATPase component; similar to E. coli ATP-binding component of sulfate permease A protein; chromate resistance (AAC75475.1); Blastp hit to AAC75475.1 (365 aa), 33% identity in aa 18 - 219" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_461991.1" /db_xref="GI:16766376" /db_xref="GeneID:1254598" /translation="MLTLNQVAYRWPDAAADCLHAISLKLRDGEWLALTGDNGAGKST LLRIMAGLLSPASGSVTLNGEPIAQLKNRQRAAAIGVLFQEAENQIFHSNVAQEVAFG LKLQRLSAEEISRRTQAALRLCQLTDVAEAHPLDLHAAQRRMVAVASLEAIAPPVLLL DEPSRDFDAHWLTVFEHWLATCRARGTSVVAISHDAAFTRRHFSRVVRLENGRLSKGE " gene complement(3236399..3238401) /gene="tktA" /locus_tag="STM3076" /db_xref="GeneID:1254599" CDS complement(3236399..3238390) /gene="tktA" /locus_tag="STM3076" /EC_number="2.2.1.1" /note="similar to E. coli transketolase 1 isozyme (AAC75972.1); Blastp hit to AAC75972.1 (663 aa), 95% identity in aa 1 - 663" /codon_start=1 /transl_table=11 /product="transketolase" /protein_id="NP_461992.1" /db_xref="GI:16766377" /db_xref="GeneID:1254599" /translation="MSSRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDF LNHNPTNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPMSELQNFRQLHSKTPGHPE VGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHFTYVFMGDGCMME GISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAKRFEAYGWHVIRGIDG HDADAIKRATEEARAVTDKPSLLMCKTIIGFGSPNKQGTHDSHGAPLGDAEIALTREQ LGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYEKAFPQEAAEFTRRMKGDMP ADFDAKANEFIAKLQANPSKIASRKASQNTIEAFGPLLPEFLGGSADLAPSNLTLWSG SKAINEDAAGNYIHYGVREFGMTAIANGIALHGGFLPYTSTFLMFVEYARNAVRMAAL MKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVE RQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCAGQPQIIFIATGSEVELAVA AYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAIEAGIADYWFKYVG LNGAIVGMTTFGESAPAELLFEEFGFTVDNVIAKAKALL" regulatory complement(3238396..3238401) /regulatory_class="ribosome_binding_site" /gene="tktA" /locus_tag="STM3076" /note="putative RBS for tktA; RegulonDB:STMS1H003118" gene 3238653..3239424 /gene="yggG" /locus_tag="STM3077" /db_xref="GeneID:1254600" regulatory 3238653..3238658 /regulatory_class="ribosome_binding_site" /gene="yggG" /locus_tag="STM3077" /note="putative RBS for yggG; RegulonDB:STMS1H003119" CDS 3238666..3239424 /gene="yggG" /locus_tag="STM3077" /note="similar to E. coli orf, hypothetical protein (AAC75973.1); Blastp hit to AAC75973.1 (294 aa), 90% identity in aa 43 - 294" /codon_start=1 /transl_table=11 /product="metalloprotease" /protein_id="NP_461993.1" /db_xref="GI:16766378" /db_xref="GeneID:1254600" /translation="MKIRALLLALGMATVLTGCQNMDSNGLLSSGAEAFQAYTLSDAQ VKALSDQSCQELDSKAKIAPASSEYTKRLAKIAAALGDNINGQPVNYKVYETKDVNAF AMANGCIRVYSGLMDMMTDNEVEAVIGHEMGHVALGHVKKGMQVALGTNAVRVAAASA GGVVGSLSQSQLGDLGEKLVNSQFSQRQESEADDYSYDLLRKRGISPAGLATSFEKLA KLEAGRQSSMFDDHPASAARAQHVRDRMSADGIK" gene complement(3239525..3240457) /gene="speB" /locus_tag="STM3078" /db_xref="GeneID:1254601" CDS complement(3239525..3240445) /gene="speB" /locus_tag="STM3078" /EC_number="3.5.3.11" /note="similar to E. coli agmatinase (AAC75974.1); Blastp hit to AAC75974.1 (306 aa), 98% identity in aa 1 - 306" /codon_start=1 /transl_table=11 /product="agmatinase" /protein_id="NP_461994.1" /db_xref="GI:16766379" /db_xref="GeneID:1254601" /translation="MSTLGHQYDNSLVSNAFGFLRLPMNFQPYDSDADWVITGVPFDM ATSGRAGGRHGPAAIRQVSTNLAWEHHRFPWNFDMRERLNVVDCGDLVYAFGDAREMS EKLQAHAEKLLSAGKRMLSFGGDHFVTLPLLRAHAKHFGKMALVHFDAHTDTYANGCE FDHGTMFYTAPKEGLIDPHHSVQIGIRTEFDKDNGFTVLDACQVNDRGVDDILAQVKQ IVGDMPVYLTFDIDCLDPAFAPGTGTPVIGGLTSDRAIKLVRGLKDLNIVGMDVVEVA PAYDQSEITALAAATLALEMLYIQAAKKGE" regulatory complement(3240452..3240457) /regulatory_class="ribosome_binding_site" /gene="speB" /locus_tag="STM3078" /note="putative RBS for speB; RegulonDB:STMS1H003120" gene complement(3240650..3241606) /locus_tag="STM3079" /db_xref="GeneID:1254602" CDS complement(3240650..3241606) /locus_tag="STM3079" /note="similar to E. coli orf, hypothetical protein (AAC73780.1); Blastp hit to AAC73780.1 (254 aa), 22% identity in aa 18 - 234" /codon_start=1 /transl_table=11 /product="putative hydrolase or acyltransferase" /protein_id="NP_461995.3" /db_xref="GI:1109557735" /db_xref="GeneID:1254602" /translation="MMLFLFNLNNMVFYTESDWRGVMNHIFKLAFIFIINIIFLINAS ATTMDKDKFVEANGIKIHYVEEGEGPPLLLIHGGGLTAKSWQGLAKEASRYFRVIMPD SRGHGLTNNPQGTFSYDLMTEDMAAFVKALKLEKPLVMGYSDGGMVVLKLTSRYPDLA RAAIVGGATHRFATTHYMQGMEIFYGKGMPQGQLTDRDLDKMASDAPGMVKFYQNMHH PEQKDYWRTFLKGVWPMWTTPTSLAEEEVKKIHIPVLLLDGDRDEFFTVEEVTELYRL LPQAEMTLIPGSGHAIFQTPGKTPLFYALVLEFLQRQIPKAS" gene complement(3241820..3242299) /locus_tag="STM3080" /db_xref="GeneID:1254603" CDS complement(3241820..3242293) /locus_tag="STM3080" /note="similar to E. coli orf, hypothetical protein (AAC77209.1); Blastp hit to AAC77209.1 (153 aa), 38% identity in aa 4 - 150" /codon_start=1 /transl_table=11 /product="putative mannitol dehydrogenase" /protein_id="NP_461996.1" /db_xref="GI:16766381" /db_xref="GeneID:1254603" /translation="MLYGNIEQLTLLPYVNHIIKKLIIEAVKIAEDQPAGRYELSFPE SFLMISEGETHSSLNRKAELHKKYIDVQILLSGYEEIGYSNKIDTRIKELEHLPDDII FPECVANEQFVTLNPGDFALFYPNQVHRPLCTRGKPAPVKKAIVKIPATAFSESS" regulatory complement(3242294..3242299) /regulatory_class="ribosome_binding_site" /locus_tag="STM3080" /note="putative RBS for STM3080; RegulonDB:STMS1H003121" gene complement(3242332..3243343) /locus_tag="STM3081" /db_xref="GeneID:1254604" CDS complement(3242332..3243339) /locus_tag="STM3081" /note="similar to E. coli putative malate dehydrogenase (AAC73619.1); Blastp hit to AAC73619.1 (349 aa), 40% identity in aa 3 - 332" /codon_start=1 /transl_table=11 /product="ureidoglycolate dehydrogenase" /protein_id="NP_461997.1" /db_xref="GI:16766382" /db_xref="GeneID:1254604" /translation="MSTILVKENELKALAFNKLTQAGLDAQTAQQVADVLVHADITGV HSHGVIRVEHYCTRLNAGGLNPKATFSIEQISPSVAILDSDDGMGHCALIKATDHAIS LARETGLGFVSVKNTSHCGALSWFIEQATSQGMVAIAMTRTDTCVAPYGGAERFLGTN PIAFGFPVKDSHPMIVDMATSAIAFGKILHAKETGKPIGHGLALDKEGHITTDPHKIE NLLPFGGHKGSGIALAIDALTGVLMGANFSNHIVRMYGDYDKMRKLASLVIVIDPQML GNPLFSSIMSTMVNELRAVKPMPGVDKVLAPNDPQIAYKEKCLKEGIPVAEGIYQYLI G" regulatory complement(3243338..3243343) /regulatory_class="ribosome_binding_site" /locus_tag="STM3081" /note="putative RBS for STM3081; RegulonDB:STMS1H003122" gene complement(3243353..3244380) /locus_tag="STM3082" /db_xref="GeneID:1254605" CDS complement(3243353..3244369) /locus_tag="STM3082" /note="similar to E. coli putative oxidoreductase (AAC77314.1); Blastp hit to AAC77314.1 (345 aa), 54% identity in aa 9 - 345" /codon_start=1 /transl_table=11 /product="galactonate oxidoreductase" /protein_id="NP_461998.1" /db_xref="GI:16766383" /db_xref="GeneID:1254605" /translation="MKTLICNNPGNIEYIERDIPHLKDDEVLLKIKAVGICGTDIHAF AGRQPFFAYPRVLGHEICGVAEMLGKSCSTAKVGQRYSVIPCIPCGACAACREGKTNC CENVSLYGVHQDGGFSEYLAVREQNLVELSDNLTDSAGALVECFAISAHAVRRADVKP QQNIVVVGAGPIGLAAAAIAKAKGARVAVADIDAERRRLVAEKVGVATLDPSSDDYID ALKACFSGELAGTVLDATGNKSSMSRAVDLIRHGGKIVFIGLYIGELVIDDPTFHKKE TTLLSSRNATREDFECVIELMAQGAISETMMKNQEFDFYTFGNQYQKNVVENKKLVKG VIKF" gene complement(3244372..3245852) /locus_tag="STM3083" /db_xref="GeneID:1254606" CDS complement(3244372..3245844) /locus_tag="STM3083" /note="similar to E. coli putative oxidoreductase (AAC75233.1); Blastp hit to AAC75233.1 (488 aa), 49% identity in aa 1 - 477" /codon_start=1 /transl_table=11 /product="fructuronate reductase" /protein_id="NP_461999.1" /db_xref="GI:16766384" /db_xref="GeneID:1254606" /translation="MDTIARQLDAARHQFKTTYSRQGMEANIVHIGFGAFHRGHQAVY NDLTNEITGNRWGIFELNLFGDAELVDALNAQQGLFSVVETSASAINSRLVRTITGAL HTPKSGIQAAIEKLTEPQVKIVSLTITEKGYCTDPRSRTLDLSHPLIKHDLADPEHPR SALGLIVEALRIRRQQGLPPFSVLSCDNIPENGHLTKTAIVTFADNLDPQLAAWIAKH VTFPGTMVDRIVPAMTPEQFDMIKDQIGFADPCGIVCEDFRQWVIEDNFVAGRPDWDK AGAMFVSDVLPYEEMKLRMLNGSHSFLAYNGSLAGYEFIYQCMEDDAFKTAVHHLMTE EQAKSLRPNLAVDVHQYAQLLIDRFSNPNIKHKTGQIAMDGSQKLPQRAVDPYLTLQA RGVKGRALATLIAGWLHYVINTLSQGQSVADPLNDTFNAAIKNKNTRWEQALSLLQIN SIFGTLASDNADFLNNIQQAFNHIELHGVTATIHRLSSKG" regulatory complement(3244375..3244380) /regulatory_class="ribosome_binding_site" /locus_tag="STM3082" /note="putative RBS for STM3082; RegulonDB:STMS1H003123" regulatory complement(3245847..3245852) /regulatory_class="ribosome_binding_site" /locus_tag="STM3083" /note="putative RBS for STM3083; RegulonDB:STMS1H003124" gene complement(3247104..3247910) /locus_tag="STM3084" /db_xref="GeneID:1254607" CDS complement(3247104..3247904) /locus_tag="STM3084" /note="similar to E. coli regulator for uxu operon (AAC77280.1); Blastp hit to AAC77280.1 (257 aa), 39% identity in aa 8 - 247" /codon_start=1 /transl_table=11 /product="putative gntR family regulatory protein" /protein_id="NP_462000.3" /db_xref="GI:1109557736" /db_xref="GeneID:1254607" /translation="MFTLPSSGAIAVYIGMCMEQILTKRRYFDIGLQIEELLYSGVFK AGERLPAERELSERFQTSRTTIREAIIMLELKGVVEVKQGAGTYFIDSLEKINQKALL PYSDIGPFELLQARQVIESNITGFAATQIRFNELKQLKRIIEQQEKQIGGDSDKFEEL DRQFHNIIAESTQNRVLMKQSAELWRAVRTENPRWKQLNYKYLHKKELRMKWVEDHRS IFLALQKRDAEQARQASWTHLENSKNELVKIFQQDDSLEDFDDFFFAT" regulatory complement(3247905..3247910) /regulatory_class="ribosome_binding_site" /locus_tag="STM3084" /note="putative RBS for STM3084; RegulonDB:STMS1H003125" gene complement(3248058..3248795) /locus_tag="STM3085" /db_xref="GeneID:1254608" CDS complement(3248058..3248789) /locus_tag="STM3085" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462001.1" /db_xref="GI:16766386" /db_xref="GeneID:1254608" /translation="MSKFKFNAVIVGLFLLLGGCSSGMQSNNGSSSDVGTAWGGDVHS SVQSVSVERADREPAEMVIINYSTQYPSGYDKVYSIRISDLEYAVRDANFNSIPITRR YNASMGQWQYSIPARSGMNYQLYIRNYSHDTNYEIVATVDGLDVLNGKAGSLNHHGYI VNAGDSLAIKGFRKDKHTEAAFQFADVADAYAAHSAQGDVRNIGVIGFAAFALQGKAT NTLPPCSSQAFPADNNGYAPPPCRK" regulatory complement(3248790..3248795) /regulatory_class="ribosome_binding_site" /locus_tag="STM3085" /note="putative RBS for STM3085; RegulonDB:STMS1H003126" gene complement(3248933..3251005) /gene="speA" /locus_tag="STM3086" /db_xref="GeneID:1254609" CDS complement(3248933..3250909) /gene="speA" /locus_tag="STM3086" /EC_number="4.1.1.19" /note="similar to E. coli biosynthetic arginine decarboxylase (AAC75975.1); Blastp hit to AAC75975.1 (658 aa), 97% identity in aa 1 - 658" /codon_start=1 /transl_table=11 /product="arginine decarboxylase" /protein_id="NP_462002.1" /db_xref="GI:16766387" /db_xref="GeneID:1254609" /translation="MSDDMSMGSPSSAGEQGVLRSMQEVAMSSQEASKMLRTYNIAWW GNNYYDVNELGHISVCPDPDVPEARVDLAKLVKAREAQGQRLPALFCFPQILQHRLRS INAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLA HAGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLEEAERLNVVPR LGVRARLASQGSGKWQSSGGEKSKFGLAATQVLQLVETLRDAGRLDSLQLLHFHLGSQ MANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNE YANNIIWAIGDACEEHGLPHPTVITESGRAVTAHHTVLVSNIIGVERNEYTDPTAPAE DAPRALQNLWETWQEMHKPGTRRSLREWLHDSQMDLHDIHIGYSSGAFSLQERAWAEQ LYLSMCHEVQKQLDPQNRAHRPIIDELQERMADKMYVNFSLFQSMPDAWGIDQLFPVL PLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEYDPENPPMLGFFMVG AYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELSDEGDTVADMLQYVQLDPKTLLTHF RDQVKQTDLDDALQQQFLEEFEAGLYGYTYLEDE" regulatory complement(3250914..3250919) /regulatory_class="ribosome_binding_site" /gene="speA" /locus_tag="STM3086" /note="putative RBS for speA; RegulonDB:STMS1H003127" gene complement(3250918..3251049) /gene="yqgB" /locus_tag="STM3087" /db_xref="GeneID:1254610" CDS complement(3250918..3251049) /gene="yqgB" /locus_tag="STM3087" /note="similar to E. coli orf, hypothetical protein (AAC75976.1); Blastp hit to AAC75976.1 (48 aa), 73% identity in aa 6 - 46" /codon_start=1 /transl_table=11 /product="virulence-promoting factor" /protein_id="NP_462003.1" /db_xref="GI:16766388" /db_xref="GeneID:1254610" /translation="MKKKPVAQAEHQRYLLENPLVYGLLSRLRIAIVVNCFTLANKN" regulatory complement(3250978..3250986) /regulatory_class="minus_10_signal" /gene="yqgB" /locus_tag="STM3087" /note="putative -10_signal for speA; RegulonDB:STMLTH004574" regulatory complement(3250997..3251005) /regulatory_class="minus_35_signal" /gene="yqgB" /locus_tag="STM3087" /note="putative -35_signal for speA; RegulonDB:STMLTH004574" gene 3251170..3251347 /gene="yqgC" /locus_tag="STM3088" /db_xref="GeneID:2673737" regulatory 3251170..3251175 /regulatory_class="ribosome_binding_site" /gene="yqgC" /locus_tag="STM3088" /note="putative RBS for yqgC; RegulonDB:STMS1H003128" CDS 3251183..3251347 /gene="yqgC" /locus_tag="STM3088" /note="similar to E. coli orf, hypothetical protein (AAC75977.1); Blastp hit to AAC75977.1 (71 aa), 78% identity in aa 1 - 51" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_452414.1" /db_xref="GI:1109557737" /db_xref="GeneID:2673737" /translation="MGITSAGMQSRDADCGGHARTRTMRQIQQNTTVHYLVSPPRPPR KTNPQAKATF" gene complement(3251344..3251654) /gene="yqgD" /locus_tag="STM3089" /db_xref="GeneID:1254612" CDS complement(3251344..3251643) /gene="yqgD" /locus_tag="STM3089" /note="similar to E. coli orf, hypothetical protein (AAC75978.1); Blastp hit to AAC75978.1 (83 aa), 52% identity in aa 1 - 78" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462005.1" /db_xref="GI:16766390" /db_xref="GeneID:1254612" /translation="MTEDSTMSLKVADTGSLSVNQYGWINIWTAILGHFFAQFPAFFE GRRNVGQNQAVNVSDNADIMRIYALLFFCVLGIKRDARLIQKHTTFSSCRHFQPG" regulatory complement(3251649..3251654) /regulatory_class="ribosome_binding_site" /gene="yqgD" /locus_tag="STM3089" /note="putative RBS for yqgD; RegulonDB:STMS1H003129" gene 3251684..3252853 /gene="metK" /locus_tag="STM3090" /db_xref="GeneID:1254613" regulatory 3251684..3251689 /regulatory_class="ribosome_binding_site" /gene="metK" /locus_tag="STM3090" /note="putative RBS for metK; RegulonDB:STMS1H003130" CDS 3251699..3252853 /gene="metK" /locus_tag="STM3090" /EC_number="2.5.1.6" /note="AdoMet synthetase; similar to E. coli methionine adenosyltransferase 1 (AdoMet synthetase); methyl and propylamine donor, corepressor of met genes (AAC75979.1); Blastp hit to AAC75979.1 (384 aa), 97% identity in aa 1 - 384" /codon_start=1 /transl_table=11 /product="methionine adenosyltransferase" /protein_id="NP_462006.1" /db_xref="GI:16766391" /db_xref="GeneID:1254613" /translation="MAKHLFTSESVSEGHPDKIADQISDAVLDAILQQDPKARVACET YVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPD INQGVDRADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPW LRPDAKSQVTFQYDDGKIVGIDAVVLSTQHAEDIDQKSLQEAVMEEIIKPILPSEWLN TSTKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAA YAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPAEQLILLVREFF DLRPYGLIQMLDLLHPIYKETAAYGHFGRENFPWEKTDKAQLLRDAAGLK" gene 3253334..3254740 /gene="galP" /locus_tag="STM3091" /db_xref="GeneID:1254614" regulatory 3253334..3253340 /regulatory_class="ribosome_binding_site" /gene="galP" /locus_tag="STM3091" /note="putative RBS for galP; RegulonDB:STMS1H003131" CDS 3253346..3254740 /gene="galP" /locus_tag="STM3091" /note="similar to E. coli galactose-proton symport of transport system (AAC75980.1); Blastp hit to AAC75980.1 (464 aa), 97% identity in aa 1 - 464" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_462007.1" /db_xref="GI:16766392" /db_xref="GeneID:1254614" /translation="MPDNKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIT DEFQITAHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAA PNVEVLIISRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLS DTAFSYSGAWRWMLGVIIIPAILLLIGVFFLPDSPRWFAAKRRFHDAERVLLRLRDTS AEAKRELDEIRESLQVKQSGWALFKENSNFRRAVFLGILLQVMQQFTGMNVIMYYAPK IFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAIGMGIL GTMMHIGIHSPSAQYFAIAMLLMFIIGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTA TNWIANMIVGATFLTMLNNLGNANTFWVYAGLNVLFILLTLWLVPETKHVSLEHIERN LMKGRKLREIGAHD" gene 3254819..3255316 /gene="sprT" /locus_tag="STM3092" /db_xref="GeneID:1254615" CDS 3254819..3255316 /gene="sprT" /locus_tag="STM3092" /note="similar to E. coli orf, hypothetical protein (AAC75981.1); Blastp hit to AAC75981.1 (165 aa), 90% identity in aa 1 - 164" /codon_start=1 /transl_table=11 /product="SprT family protein" /protein_id="NP_462008.1" /db_xref="GI:16766393" /db_xref="GeneID:1254615" /translation="MKTPRLPIAIQQAVMRRLRENLAQANLKLDRHYPEPKLVYTQRG TSAGTAWLESYEIRLNPVLLLENIDTFIAEVVPHELAHLLVWKHFGRKAPHGKEWKWM MESVLGVPARRTHQFALQSVRRNTFPYHCQCQQHQLTVRRHNRVVRGEAVYRCVHCGE PLVAG" gene 3255348..3256118 /gene="endA" /locus_tag="STM3093" /db_xref="GeneID:1254616" regulatory 3255348..3255356 /regulatory_class="minus_35_signal" /gene="endA" /locus_tag="STM3093" /note="putative -35_signal for endA; RegulonDB:STMLTH004575" regulatory 3255375..3255383 /regulatory_class="minus_10_signal" /gene="endA" /locus_tag="STM3093" /note="putative -10_signal for endA; RegulonDB:STMLTH004575" regulatory 3255399..3255404 /regulatory_class="ribosome_binding_site" /gene="endA" /locus_tag="STM3093" /note="putative RBS for endA; RegulonDB:STMS1H003132" CDS 3255411..3256118 /gene="endA" /locus_tag="STM3093" /EC_number="3.1.21.1" /note="similar to E. coli DNA-specific endonuclease I (AAC75982.1); Blastp hit to AAC75982.1 (235 aa), 87% identity in aa 1 - 235" /codon_start=1 /transl_table=11 /product="deoxyribonuclease I" /protein_id="NP_462009.1" /db_xref="GI:16766394" /db_xref="GeneID:1254616" /translation="MYRNFSFAAALLAAAFSGQALADGINNFSQAKAASVKVNADAPG SFYCGCQIRWQGKKGVVDLESCGYKVRKNENRARRIEWEHVVPAWQFGHQRQCWQDGG RKNCAKDPVYRKMESDMHNLQPAIGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKAK IAEPPARARGAIARIYFYMRDQYQLKLSRQQTQLFNVWDKQYPVTAWECERDARIAKV QGNHNPYVQRACQARKS" gene 3256128..3256926 /gene="yggJ" /locus_tag="STM3094" /db_xref="GeneID:1254617" regulatory 3256128..3256133 /regulatory_class="ribosome_binding_site" /gene="yggJ" /locus_tag="STM3094" /note="putative RBS for yggJ; RegulonDB:STMS1H003133" CDS 3256147..3256926 /gene="yggJ" /locus_tag="STM3094" /note="similar to E. coli orf, hypothetical protein (AAC75983.1); Blastp hit to AAC75983.1 (252 aa), 90% identity in aa 1 - 252" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462010.3" /db_xref="GI:1109557738" /db_xref="GeneID:1254617" /translation="MPWIAKRRGHDADFFIMRIPRIYHPELLTSGTQISLCEDAANHI GRVLRMGPGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRESPLHIHLGQVM SRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKRQQWQKIAIAACEQCGR NRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINTLPLPVERVRLLIGPEGGLSAD EIAMTARYQFTDILLGPRVLRTETTALTAITALQVRFGDLG" gene 3256934..3257893 /gene="gshB" /locus_tag="STM3095" /db_xref="GeneID:1254618" regulatory 3256934..3256939 /regulatory_class="ribosome_binding_site" /gene="gshB" /locus_tag="STM3095" /note="putative RBS for gshB; RegulonDB:STMS1H003134" CDS 3256946..3257893 /gene="gshB" /locus_tag="STM3095" /EC_number="6.3.2.3" /note="similar to E. coli glutathione synthetase (AAC75984.1); Blastp hit to AAC75984.1 (316 aa), 90% identity in aa 1 - 313" /codon_start=1 /transl_table=11 /product="glutathione synthase" /protein_id="NP_462011.1" /db_xref="GI:16766396" /db_xref="GeneID:1254618" /translation="MIKLGIVMDPIAHINIKKDTSFAMLLEAQRRGYELHYMEMADLY LINGEARARTRTLSVEQNYDKWYEFGSEQEIKLADLDVILMRKDPPFDTEFIYATYIL ERAEEEGTLIVNKPQSLRDCNEKLYTAWFADLTPETLVTRNKAQLKAFWEKHGDIIMK PLDGMGGASIFRVKEGDPNIGVIAETLTELGNRYCMAQNYLPAIKDGDKRVLVVDGEP VPYCLARIPQGGETRGNLAAGGRGEPRPLSESDWEIARRVGPTLKAKGLIFVGLDIIG DRLTEINVTSPTCVREIEAEYPISITGMLMDAIEARLAK" gene 3258095..3258672 /gene="yqgE" /locus_tag="STM3096" /db_xref="GeneID:1254619" regulatory 3258095..3258100 /regulatory_class="ribosome_binding_site" /gene="yqgE" /locus_tag="STM3096" /note="putative RBS for yqgE; RegulonDB:STMS1H003135" CDS 3258109..3258672 /gene="yqgE" /locus_tag="STM3096" /note="similar to E. coli orf, hypothetical protein (AAC75985.1); Blastp hit to AAC75985.1 (211 aa), 92% identity in aa 25 - 211" /codon_start=1 /transl_table=11 /product="DUF179 domain-containing protein" /protein_id="NP_462012.1" /db_xref="GI:16766397" /db_xref="GeneID:1254619" /translation="MNLQHHFLIAMPALQDPIFRRSVVYICEHNQDGAMGIIVNKPLE NLQIEGILEKLKITPEPRDSAIRLDKAVMLGGPLAEDRGFILHTPPSRFASSIRISDN TVITTSRDVLETLGTQQQPSDVLVALGYASWDKGQLEQELLDNAWLTAPADLNILFKT PIAERWREAAKLIGIDILTMPGVAGHA" gene 3258658..3259088 /gene="yqgF" /locus_tag="STM3097" /db_xref="GeneID:1254620" regulatory 3258658..3258663 /regulatory_class="ribosome_binding_site" /gene="yqgF" /locus_tag="STM3097" /note="putative RBS for yqgF; RegulonDB:STMS1H003136" CDS 3258672..3259088 /gene="yqgF" /locus_tag="STM3097" /note="similar to E. coli orf, hypothetical protein (AAC75986.1); Blastp hit to AAC75986.1 (138 aa), 95% identity in aa 1 - 138" /codon_start=1 /transl_table=11 /product="Holliday junction DNA helicase RuvA" /protein_id="NP_462013.1" /db_xref="GI:16766398" /db_xref="GeneID:1254620" /translation="MSGTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTL IERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVTVTLHDERLSTVE ARSGLFERGGYRALNKGKVDSASAVIILESYFEQGY" gene complement(3259135..3259824) /locus_tag="STM3098" /db_xref="GeneID:1254621" CDS complement(3259135..3259821) /locus_tag="STM3098" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_462014.1" /db_xref="GI:16766399" /db_xref="GeneID:1254621" /translation="MSSQPNQSLIDGIRCLQYLVSSDRAIGCRELARLMDINTTRVNR LLMTMASIGLTMQDEHRRYLPGPGIHALAAQAIRGSALFSHALPILERHAPKDIVVAL GVLWEDQIIYIYHSTPGSQGSQALAGFRMYPAWQSVPGVALLAAESDEALMQRFTPEQ WRNLAPHVAQQRQRGYVLWHHADGEVSMAQPLGKHAAALAFAGMWRIDEAEAAARLQA LKALNQLIAQ" regulatory complement(3259819..3259824) /regulatory_class="ribosome_binding_site" /locus_tag="STM3098" /note="putative RBS for STM3098; RegulonDB:STMS1H003137" gene complement(3259953..3260945) /gene="yggR" /locus_tag="STM3099" /db_xref="GeneID:1254622" CDS complement(3259953..3260933) /gene="yggR" /locus_tag="STM3099" /note="similar to E. coli putative protein transport (AAC75987.1); Blastp hit to AAC75987.1 (341 aa), 79% identity in aa 16 - 341" /codon_start=1 /transl_table=11 /product="type IV pili twitching motility protein PilT" /protein_id="NP_462015.1" /db_xref="GI:16766400" /db_xref="GeneID:1254622" /translation="MNMEEIVTLSVKHNVSDLHLCNAWPARWRKQGRMENAPFTAPDV DRLLLDWLNDAQQYQWRTHGQLDFAVSLSGTRRLRASAFTHQQGTSLALRLLPERCPD LAKIQTPPIVPALLASENGLILVTGATGCGKSTTLAAMVGYLNQHADKHILTLEDPIE YRYTSKRCLIQQREIGQHCATFAAGLRAALREDPDVILLGELRDSETIRLALTAAETG HLVLATLHTRGAAQAVERLVDSFPAQEKEPVRSQLAGSLRAVLSQKLEVDRQDGRVAL FELLINTPATGNLIREGKLHQLAHVIQTGQQQGMMTFAQSAQWRQAQGRL" regulatory complement(3260940..3260945) /regulatory_class="ribosome_binding_site" /gene="yggR" /locus_tag="STM3099" /note="putative RBS for yggR; RegulonDB:STMS1H003138" gene 3260944..3261655 /gene="yggS" /locus_tag="STM3100" /db_xref="GeneID:1254623" regulatory 3260944..3260949 /regulatory_class="ribosome_binding_site" /gene="yggS" /locus_tag="STM3100" /note="putative RBS for yggS; RegulonDB:STMS1H003139" CDS 3260951..3261655 /gene="yggS" /locus_tag="STM3100" /note="similar to E. coli orf, hypothetical protein (AAC75988.1); Blastp hit to AAC75988.1 (234 aa), 89% identity in aa 1 - 233" /codon_start=1 /transl_table=11 /product="YggS family pyridoxal phosphate enzyme" /protein_id="NP_462016.1" /db_xref="GI:16766401" /db_xref="GeneID:1254623" /translation="MNDIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIA EAIAAGQRAFGENYVQEGVEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHT IDRLRIASRLSEQRPDNLPALNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRL RGLMAIPAPESDYVRQFEVARQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTM VRIGTAIFGARDYTKN" gene 3261664..3262240 /gene="yggT" /locus_tag="STM3101" /db_xref="GeneID:1254624" regulatory 3261664..3261669 /regulatory_class="ribosome_binding_site" /gene="yggT" /locus_tag="STM3101" /note="putative RBS for yggT; RegulonDB:STMS1H003140" CDS 3261674..3262240 /gene="yggT" /locus_tag="STM3101" /note="similar to E. coli putative resistance protein (AAC75989.1); Blastp hit to AAC75989.1 (188 aa), 90% identity in aa 1 - 188" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462017.1" /db_xref="GI:16766402" /db_xref="GeneID:1254624" /translation="MNTLTFLLSTVIELYTMVLLLRVWMQWARCDFYNPFSQFVVKIT QPIIGPLRRIIPPMGPIDSASLLVAFILSVIKAIVLFKVITFQAIIWIAAVLILLKTI GLLIFWVLLVMAIMSWVSQGRSPIEYVLIQLAEPLLSPIRRILPAMGGIDFSPMVLVL LLYVVNMGIAEVLQATGNMLLPGLWMAL" gene 3262225..3262527 /gene="yggU" /locus_tag="STM3102" /db_xref="GeneID:1254625" regulatory 3262225..3262230 /regulatory_class="ribosome_binding_site" /gene="yggU" /locus_tag="STM3102" /note="putative RBS for yggU; RegulonDB:STMS1H003141" CDS 3262237..3262527 /gene="yggU" /locus_tag="STM3102" /note="similar to E. coli orf, hypothetical protein (AAC75990.1); Blastp hit to AAC75990.1 (100 aa), 90% identity in aa 5 - 98" /codon_start=1 /transl_table=11 /product="YggU family protein" /protein_id="NP_462018.1" /db_xref="GI:16766403" /db_xref="GeneID:1254625" /translation="MSAVTRCEDGLVLRLYIQPKASRDSIVGLHGDEVKIAITAPPVD GQANSHLTKFLGKQFRVAKSQIVIEKGELGRHKQVKIIHPQQIPPEIAALTE" gene 3262525..3263128 /gene="yggV" /locus_tag="STM3103" /db_xref="GeneID:1254626" regulatory 3262525..3262530 /regulatory_class="ribosome_binding_site" /gene="yggV" /locus_tag="STM3103" /note="putative RBS for yggV; RegulonDB:STMS1H003142" CDS 3262535..3263128 /gene="yggV" /locus_tag="STM3103" /note="similar to E. coli putative ribosomal protein (AAC75991.1); Blastp hit to AAC75991.1 (197 aa), 91% identity in aa 1 - 197" /codon_start=1 /transl_table=11 /product="RdgB/HAM1 family non-canonical purine NTP pyrophosphatase" /protein_id="NP_462019.1" /db_xref="GI:16766404" /db_xref="GeneID:1254626" /translation="MQKVVLATGNAGKVRELASLLSDFGLDVVAQTELGVDSAEETGL TFIENAILKARHAAKMTGLPAIADDSGLAVDVLGGAPGIYSARYSGENATDQQNLEKL LHTLRDVPDDKRQARFHCVLVYLRHAEDPTPIVCHGSWPGVITRQAAGNGGFGYDPIF FVPSEGKTAAELTREEKSAISHRGQALKLLLDALRNG" gene 3263105..3264257 /gene="yggW" /locus_tag="STM3104" /db_xref="GeneID:1254627" regulatory 3263105..3263110 /regulatory_class="ribosome_binding_site" /gene="yggV" /locus_tag="STM3103" /note="putative RBS for yggW; RegulonDB:STMS1H003143" CDS 3263121..3264257 /gene="yggW" /locus_tag="STM3104" /note="similar to E. coli putative oxidase (AAC75992.1); Blastp hit to AAC75992.1 (378 aa), 92% identity in aa 1 - 378" /codon_start=1 /transl_table=11 /product="YggW family oxidoreductase" /protein_id="NP_462020.1" /db_xref="GI:16766405" /db_xref="GeneID:1254627" /translation="MAKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLL NDLDADVAWAQGREVKTIFIGGGTPSLLSGPAMQTLLDGVRARLNLAADAEITMEANP GTVEADRFIDYQRAGVNRISIGVQSFSEPKLKRLGRIHGPQEAKRAARLANGLGLRSF NLDLMHGLPDQTLEEALNDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALW DIFEQGHQLLTAAGYQQYETSAYAKPGYQCQHNLNYWRFGDYLGIGCGAHGKVTFPDG RILRTTKTRHPRGYMQGRYLESQRDVSDDDKPFEFFMNRFRLLERAPRAEFVDYTGLT EAVIRQPIDEAIAQGYLTECEQYWQITRHGKLFLNSLLELFLAE" gene complement(3264348..3265374) /gene="yggM" /locus_tag="STM3105" /db_xref="GeneID:1254628" CDS complement(3264348..3265355) /gene="yggM" /locus_tag="STM3105" /note="similar to E. coli putative alpha helix chain (AAC75993.1); Blastp hit to AAC75993.1 (335 aa), 64% identity in aa 3 - 335" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462021.1" /db_xref="GI:16766406" /db_xref="GeneID:1254628" /translation="MVRQWIAGAALFALISGYSWAEVAQPSDNILKEQFSKQYHGILK LDSITLKNLDSTGNQATWSAEGDISSREDMYTGVGMAADYYFVEKTWTKDRPVKFSAM LTSKGTPASGWTVNYYSLQMAASDQGRAIDDIKTNDKYLIVNSDDFNYRFGNIEASWR AQKASIPGLEEQLSALDKKIAVAKKEADAYWGKGADGKPLTRAEAFKKTLKERDDYVK ANDSSVYAEKYEKEVYQPALDACRKQSEPCNEAAIQQKRDLDIHEQRRQVFLKSEELR RKAQNDWITLEKGQYPLNIAVQKLQMQQSDIRVKIMDINDGYERWKKDTDDLRRKGVI K" regulatory complement(3265369..3265374) /regulatory_class="ribosome_binding_site" /gene="yggM" /locus_tag="STM3105" /note="putative RBS for yggM; RegulonDB:STMS1H003144" gene complement(3265488..3266704) /gene="ansB" /locus_tag="STM3106" /db_xref="GeneID:1254629" CDS complement(3265488..3266534) /gene="ansB" /locus_tag="STM3106" /EC_number="3.5.1.1" /note="similar to E. coli periplasmic L-asparaginase II (AAC75994.1); Blastp hit to AAC75994.1 (348 aa), 92% identity in aa 1 - 348" /codon_start=1 /transl_table=11 /product="L-asparaginase II" /protein_id="NP_462022.1" /db_xref="GI:16766407" /db_xref="GeneID:1254629" /translation="MEFFRKTALAALVMGFSGAAFALPNITILATGGTIAGGGDSATK SNYTAGKVGVENLVDAVPQLKDIAVVKGEQVVNIGSQDMNDEVWLTLAKKINTECDST DGFVITHGTDTMEETAYFLDLTVKCNKPVVLVGAMRPSTSMSADGPFNLYNAVVTAAD KQSANRGVLVVMNDTVMDGRDVTKTNTTDVATFKAVNYGPLGYIHNGKIDYQRTPERK HTTSTPFDVSKLTALPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKTVF DTLATAAHNGTVVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQ TKDPKQIQTMFNQY" regulatory complement(3266542..3266547) /regulatory_class="ribosome_binding_site" /gene="ansB" /locus_tag="STM3106" /note="putative RBS for ansB; RegulonDB:STMS1H003145" protein_bind complement(3266569..3266593) /gene="ansB" /locus_tag="STM3106" /note="putative binding site for FNR, RegulonDB: STMS1H000170" /bound_moiety="FNR" protein_bind complement(3266635..3266659) /gene="ansB" /locus_tag="STM3106" /note="putative binding site for FNR, RegulonDB: STMS1H000150" /bound_moiety="FNR" protein_bind complement(3266639..3266659) /gene="ansB" /locus_tag="STM3106" /note="putative binding site for CRP, RegulonDB: STMS1H000053" /bound_moiety="CRP" regulatory complement(3266680..3266688) /regulatory_class="minus_10_signal" /gene="ansB" /locus_tag="STM3106" /note="putative -10_signal for ansB; RegulonDB:STMLTH004576" regulatory complement(3266696..3266704) /regulatory_class="minus_35_signal" /gene="ansB" /locus_tag="STM3106" /note="putative -35_signal for ansB; RegulonDB:STMLTH004576" gene complement(3266723..3267453) /gene="yggN" /locus_tag="STM3107" /db_xref="GeneID:1254630" CDS complement(3266723..3267442) /gene="yggN" /locus_tag="STM3107" /note="similar to E. coli orf, hypothetical protein (AAC75995.1); Blastp hit to AAC75995.1 (239 aa), 87% identity in aa 1 - 239" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462023.1" /db_xref="GI:16766408" /db_xref="GeneID:1254630" /translation="MMRKTLLATVLTFTAMAAHADYKCSVTPRDDVILSPQTVQVKGE NGNLVITPDGNVMYNGKQYTLSAAQREQAKDYQAELRSALPWIDEGARSRVEKGRVAL DKIIAKEVGESSNMRSRLTKLDAQLKAQMNRIIEHRTDGLTFHYKAIDQVRADGQQLV NQAMGGILQDSINEMGAKAVLKGGGNPLQGVMGSLGGLQTAIQNEWKNQEKDFQQFGK DVCSRVVTLEDSRKALVGSLK" regulatory complement(3267448..3267453) /regulatory_class="ribosome_binding_site" /gene="yggN" /locus_tag="STM3107" /note="putative RBS for yggN; RegulonDB:STMS1H003146" gene complement(3267492..3267830) /gene="yggL" /locus_tag="STM3108" /db_xref="GeneID:1254631" CDS complement(3267492..3267818) /gene="yggL" /locus_tag="STM3108" /note="similar to E. coli orf, hypothetical protein (AAC75996.1); Blastp hit to AAC75996.1 (118 aa), 95% identity in aa 11 - 118" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462024.1" /db_xref="GI:16766409" /db_xref="GeneID:1254631" /translation="MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQVDKTVDD FINDVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEEHQAIVRKWLEARNLEEVRTSEL FDVWWD" gene complement(3267818..3268554) /gene="yggH" /locus_tag="STM3109" /db_xref="GeneID:1254632" CDS complement(3267818..3268537) /gene="yggH" /locus_tag="STM3109" /note="similar to E. coli orf, hypothetical protein (AAC75997.1); Blastp hit to AAC75997.1 (239 aa), 93% identity in aa 1 - 239" /codon_start=1 /transl_table=11 /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB" /protein_id="NP_462025.1" /db_xref="GI:16766410" /db_xref="GeneID:1254632" /translation="MKNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPV MGVEFSEAPVDFATLFGREAPVTLEIGFGMGASLVAMAKARPEQNFLGIEVHSPGVGA CLASANEEGVENLRVMCHDAVEVLHKMIPDNSLSMVQLFFPDPWHKARHNKRRIVQVP FAELVLSKLKLGGVFHMATDWEAYAEHMLEVMSSIDGYKNLSESNDYVPRPESRPVTK FEQRGHRLGHGVWDLMFERVK" regulatory complement(3267825..3267830) /regulatory_class="ribosome_binding_site" /gene="yggL" /locus_tag="STM3108" /note="putative RBS for yggL; RegulonDB:STMS1H003147" regulatory complement(3268549..3268554) /regulatory_class="ribosome_binding_site" /gene="yggH" /locus_tag="STM3109" /note="putative RBS for yggH; RegulonDB:STMS1H003148" gene 3268692..3269744 /gene="mutY" /locus_tag="STM3110" /db_xref="GeneID:1254633" CDS 3268692..3269744 /gene="mutY" /locus_tag="STM3110" /EC_number="3.2.2.-" /note="A/G-specific adenine glycosylase. (SW:MUTY_SALTY)" /codon_start=1 /transl_table=11 /product="A/G-specific adenine glycosylase" /protein_id="NP_462026.1" /db_xref="GI:16766411" /db_xref="GeneID:1254633" /translation="MQASQFSAQVLDWYDKYGRKTLPWQINKTPYKVWLSEVMLQQTQ VTTVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGG EFPQTFAEIAALPGVGRSTAGAILSLALGKHYPILDGNVKRVLARCYAVSGWPGKKEV ENTLWTLSEQVTPARGVERFNQAMMDLGAMVCTRSKPKCTLCPLQNGCIAAAHESWSR YPGKKPKQTLPERTGYFLLLQHNQEIFLAQRPPSGLWGGLYCFPQFAREDELREWLAQ RHVNADNLTQLNAFRHTFSHFHLDIVPMWLPVSSLDACMDEGSALWYNLAQPPSVGLA APVERLLQQLRTGAPV" gene 3269761..3270047 /gene="yggX" /locus_tag="STM3111" /db_xref="GeneID:1254634" regulatory 3269761..3269766 /regulatory_class="ribosome_binding_site" /gene="yggX" /locus_tag="STM3111" /note="putative RBS for yggX; RegulonDB:STMS1H003149" CDS 3269772..3270047 /gene="yggX" /locus_tag="STM3111" /note="similar to E. coli orf, hypothetical protein (AAC75999.1); Blastp hit to AAC75999.1 (91 aa), 94% identity in aa 1 - 91" /codon_start=1 /transl_table=11 /product="oxidative damage protection protein" /protein_id="NP_462027.1" /db_xref="GI:16766412" /db_xref="GeneID:1254634" /translation="MSRTIFCTYLQRDAEGQDFQLYPGELGKRIYNEISKDAWAQWQH KQTMLINEKKLNMMNAEHRKLLEQEMVSFLFEGKDVHIEGYTPEDKK" gene 3270160..3271245 /gene="mltC" /locus_tag="STM3112" /db_xref="GeneID:1254635" CDS 3270160..3271245 /gene="mltC" /locus_tag="STM3112" /EC_number="3.2.1.-" /note="similar to E. coli membrane-bound lytic murein transglycosylase C (AAC76000.1); Blastp hit to AAC76000.1 (360 aa), 91% identity in aa 1 - 360" /codon_start=1 /transl_table=11 /product="murein transglycosylase C" /protein_id="NP_462028.1" /db_xref="GI:16766413" /db_xref="GeneID:1254635" /translation="MMKKLLALAVIAPLLISCSSSTKKGETYNEAWVKDTNGFDILMG QFANNIENLWGYKEVLIAGPKDYVKYTDQFQTRSHINFDDGTITVETIAGTEPTAHLR RAIIKTLLMGDDPTSVDLYSDVDDIKISKEPFLYGQVLDNTGQPIRWEGRATTFADYL LKTRLKSRSNGLRIIYSVTINLVPNHLDKRAHKYIGMVRQASRKYGVDESLILAIMQT ESSFNPYAVSHADALGLMQVVQHSAGKDVFRSQGKSGTPSRNFLFDPASNIDTGTAYL AMLNNVYLSGIENPTSRRYAVITAYNGGAGSVLRVFSNDKIQAANMINRMSPGDVYQI LTTRHPSAESRRYLYKVNSAQRSYRRR" gene 3271265..3272718 /gene="nupG" /locus_tag="STM3113" /db_xref="GeneID:1254636" regulatory 3271265..3271273 /regulatory_class="minus_35_signal" /gene="nupG" /locus_tag="STM3113" /note="putative -35_signal for nupG; RegulonDB:STMLTH004577" regulatory 3271292..3271300 /regulatory_class="minus_10_signal" /gene="nupG" /locus_tag="STM3113" /note="putative -10_signal for nupG; RegulonDB:STMLTH004577" protein_bind 3271349..3271369 /gene="nupG" /locus_tag="STM3113" /note="putative binding site for CRP, RegulonDB: STMS1H000073" /bound_moiety="CRP" protein_bind 3271381..3271401 /gene="nupG" /locus_tag="STM3113" /note="putative binding site for CRP, RegulonDB: STMS1H000042" /bound_moiety="CRP" protein_bind 3271391..3271411 /gene="nupG" /locus_tag="STM3113" /note="putative binding site for CRP, RegulonDB: STMS1H000078" /bound_moiety="CRP" regulatory 3271443..3271448 /regulatory_class="ribosome_binding_site" /gene="nupG" /locus_tag="STM3113" /note="putative RBS for nupG; RegulonDB:STMS1H003150" CDS 3271462..3272718 /gene="nupG" /locus_tag="STM3113" /note="similar to E. coli transport of nucleosides, permease protein (AAC76001.1); Blastp hit to AAC76001.1 (434 aa), 90% identity in aa 17 - 434" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_462029.1" /db_xref="GI:16766414" /db_xref="GeneID:1254636" /translation="MNLKLQLKILSFLQFCLWGSWLTTLGSYMFVTLKFDGASIGAVY SSLGIAAVFMPTLLGIVADKWLSAKWVYALCHVVGAITLFMAAEVTTPGAMFFVILLN SLAYMPTLGLINTISYYRLQSAGMDIVTDFPPIRIWGTIGFILAMWGVSFSGFELSHM QLYIGATLSVLLVLFTFTLPHIPVANQQKNQSWTSMLGLDAFALFKNKRMAIFFIFSM MLGAELQITNMFGNTFLHSFDKDPLFASSFIVQHASVMMSISQISETLFILTIPFFLS RYGIKNVMLISIVAWMLRFGLFAYGDPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVE KEVRPEIRASAQGMFLMMTNGFGCILGGIVSGKVVEYYTQNGITDWQTVWLIFAGYSL VLAFAFVALFKYKHVRVPASSQPVAH" protein_bind 3271469..3271489 /gene="nupG" /locus_tag="STM3113" /note="putative binding site for CRP, RegulonDB: STMS1H000048" /bound_moiety="CRP" gene complement(3272780..3275026) /gene="speC" /locus_tag="STM3114" /db_xref="GeneID:1254637" CDS complement(3272780..3274915) /gene="speC" /locus_tag="STM3114" /EC_number="4.1.1.17" /note="similar to E. coli ornithine decarboxylase isozyme (AAC76002.1); Blastp hit to AAC76002.1 (731 aa), 87% identity in aa 21 - 731" /codon_start=1 /transl_table=11 /product="ornithine decarboxylase" /protein_id="NP_462030.1" /db_xref="GI:16766415" /db_xref="GeneID:1254637" /translation="MKSMNIAASGELIPRLSTHRNVVALDSTDFTDVAAVVITTADSR SGILALLKRTGFHLPVFMLADEPVSAPVGVTAVIVGNAQEWLELENAACRYEAELLPP FYGTLTQYVDMGNSTFACPGHQHGEFFRKHPAGRHFYDFFGENLFRADMCNADVKLGD LLIHEGSAKHAQKFAAKVFNADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKS NHHGALIQAGATPVYLEAARNPFGFIGGIDAHCFDETYLRDQIRDVMPESADASRPFR LAIIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFINMMADTSPLRLELNE NDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIRGQARFCPHKRLNNAFMLHASTSPFYP LFAALDVNAKIHEGESGRRLWAECVALGIDARKAILARCKLLQPFIPLVVDGKPWQAY PTETIASNRRFFSFEPGAKWHGFEGYADDQYFVDPCKLLLTTPGIDADSGRYTEFGIP ATILAHYLRENGIVPEKCDLNSILFLLTPAESEEKLARLVAMLAQFERHIEDDTPLAD VLPTVFQKYPVRYRDYTLRELCQEMHNLYVSFDVKDLQKAMFRKESLPHVAMNPQDAN SAFIRGDVELVRISEAGGRIAAEGALPYPPGVLCVVPGEIWGGAAQRYFLALEEGINL LPGFSPELQGVYSETDADGIQRLYGYVLK" regulatory complement(3274926..3274931) /regulatory_class="ribosome_binding_site" /gene="speC" /locus_tag="STM3114" /note="putative RBS for speC; RegulonDB:STMS1H003151" regulatory complement(3275002..3275010) /regulatory_class="minus_10_signal" /gene="speC" /locus_tag="STM3114" /note="putative -10_signal for speC; RegulonDB:STMLTH004578" regulatory complement(3275018..3275026) /regulatory_class="minus_35_signal" /gene="speC" /locus_tag="STM3114" /note="putative -35_signal for speC; RegulonDB:STMLTH004578" gene 3275329..3276047 /gene="yqgA" /locus_tag="STM3115" /db_xref="GeneID:1254638" regulatory 3275329..3275334 /regulatory_class="ribosome_binding_site" /gene="yqgA" /locus_tag="STM3115" /note="putative RBS for yqgA; RegulonDB:STMS1H003152" CDS 3275340..3276047 /gene="yqgA" /locus_tag="STM3115" /note="similar to E. coli putative transport protein (AAC76003.1); Blastp hit to AAC76003.1 (235 aa), 83% identity in aa 1 - 235" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462031.1" /db_xref="GI:16766416" /db_xref="GeneID:1254638" /translation="MVIGPFINAGAILFGGVIGALLSQRLPERIRVSMTSIFGLCSLG IGILLVMKCANLPVMVLATLVGALIGEFCLLEKGINGAVAKIQQLFMASGKKPTHDSF IQSYVAIIVLFCASGTGIFGAMHEGMTGDPNILIAKSFLDFFTAIIFACSLGIAVSAI CAPMLIIQLTLAACATLILPLTTPAMMGDFSAVGGLLLVATGLRVCGIKMFPVVNMLP ALLLAMPISAAWAMFFA" gene 3276153..3276225 /gene="pheV" /locus_tag="STM3116" /db_xref="GeneID:1254639" tRNA 3276153..3276225 /gene="pheV" /locus_tag="STM3116" /product="tRNA-Phe" /db_xref="GeneID:1254639" gene complement(3276387..3276826) /locus_tag="STM3117" /db_xref="GeneID:1254640" CDS complement(3276387..3276821) /locus_tag="STM3117" /codon_start=1 /transl_table=11 /product="putative lactoylglutathione lyase" /protein_id="NP_462032.1" /db_xref="GI:16766417" /db_xref="GeneID:1254640" /translation="MLFFNVASLKYKHHESIQMIIDRIDHLVLTVSDISTTIRFYEEV LGFSAVTFKQNRKALIFGAQKINLHQQEMEFEPKASRPTPGSADLCFITSTPINDVVS EILQAGISIVEGPVERTGATGEIMSIYIRDPDGNLIEISQYV" regulatory complement(3276821..3276826) /regulatory_class="ribosome_binding_site" /locus_tag="STM3117" /note="putative RBS for STM3117; RegulonDB:STMS1H003154" gene complement(3276832..3278170) /locus_tag="STM3118" /db_xref="GeneID:1254641" CDS complement(3276832..3278157) /locus_tag="STM3118" /note="similar to E. coli putative coenzyme A transferase (AAC75957.1); Blastp hit to AAC75957.1 (492 aa), 27% identity in aa 187 - 458, 24% identity in aa 8 - 169" /codon_start=1 /transl_table=11 /product="putative acetyl-CoA hydrolase" /protein_id="NP_462033.1" /db_xref="GI:16766418" /db_xref="GeneID:1254641" /translation="MMNVNAVYAEKCVTPDEAVTLITSGSHLSMGMFAAEPPALLNAL AKRAKRGEINDLRVYCYETASIAGNTIFRYELSDYIHLYSMFITGIERALIRQGIESS GRKIVNYVPSNFHQATRLLADDIGIDTFIHTVSPMDKYGYFNFGTGNDYSTRIARTAK KLIVEVNKYMPRVHGEGAAIHISEIDAIVENHVPLIELPIRTAVAEDIAISQIIASLV PDGACLQMGVGALPELICNALKEHNDLGVHTEALNPGLVSLIQQGVVTNQRKNIDRGM SVFTFAMGQKDMYDYLNDNPSFFSRPVDYVNDPGIIAQNENVVSINATLQIDLTGACN SEYLLGHQYSASGGQLDFVRGAYASKGGRSIITTRSTAANDTISRIVPRLEGPVTTPR TDTHWIVTEFGSVNLKGLSSTERALSIIELAHPNFRQQLRVDAKKMHLI" regulatory complement(3278165..3278170) /regulatory_class="ribosome_binding_site" /locus_tag="STM3118" /note="putative RBS for STM3118; RegulonDB:STMS1H003155" gene complement(3278182..3278716) /locus_tag="STM3119" /db_xref="GeneID:1254642" CDS complement(3278182..3278709) /locus_tag="STM3119" /note="similar to E. coli putative aldehyde dehydrogenase (AAC74469.1); Blastp hit to AAC74469.1 (681 aa), 29% identity in aa 530 - 661" /codon_start=1 /transl_table=11 /product="molybdenum cofactor biosynthesis protein MoeC" /protein_id="NP_462034.1" /db_xref="GI:16766419" /db_xref="GeneID:1254642" /translation="MNTLLPAYKTISEGRYREISGLYWEDFHPGDVFEHRPGRTVLDA DNVWFTLLTLNVQPVHFDAAYASKTEWKKLLVDSTFTLALLTGMSVRTVSAKVVANLG WDKVQAVHPVFAGDTLYAESTVLSKRLSNSRPGQGIVTVRTCGINQNGVEVMRFERTM LVYCCGCSPEEDAAY" regulatory complement(3278711..3278716) /regulatory_class="ribosome_binding_site" /locus_tag="STM3119" /note="putative RBS for STM3119; RegulonDB:STMS1H003156" gene complement(3278733..3279583) /locus_tag="STM3120" /db_xref="GeneID:1254643" CDS complement(3278733..3279575) /locus_tag="STM3120" /EC_number="4.1.3.6" /note="similar to E. coli citrate lyase beta chain (acyl lyase subunit) (AAC73717.1); Blastp hit to AAC73717.1 (307 aa), 31% identity in aa 20 - 299" /codon_start=1 /transl_table=11 /product="CoA ester lyase" /protein_id="NP_462035.1" /db_xref="GI:16766420" /db_xref="GeneID:1254643" /translation="MPDISHTPTRSWLFTPAIRPERFIKAVESAADISIIDLEDSVTP NDKAQARKIAMQFLSSRPNSSLKIALRINGMNTHAGIEDLHMLLECRFFPDYIILPKT ESAAHLQIVDSLIMMAGSDTRLIGIIESVVGLNAVESIADATPRLCGLMFGAADMAAD IGATPAWEPLALARARIVAACAMKGLLAIDAPFFDIGDFSGLKEETLQALSFGFSAKS AIHPAQISVINAAFTPTTAEINHARAVLTENAKGVGIVSGMMIDAAVARQARRLLARA GIFS" regulatory complement(3279578..3279583) /regulatory_class="ribosome_binding_site" /locus_tag="STM3120" /note="putative RBS for STM3120; RegulonDB:STMS1H003157" gene 3279662..3280545 /locus_tag="STM3121" /db_xref="GeneID:1254644" regulatory 3279662..3279667 /regulatory_class="ribosome_binding_site" /locus_tag="STM3121" /note="putative RBS for STM3121; RegulonDB:STMS1H003158" CDS 3279667..3280545 /locus_tag="STM3121" /note="putative transcriptional regulator (gi|5852589)" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_462036.1" /db_xref="GI:16766421" /db_xref="GeneID:1254644" /translation="MELRHIRYFLAVAEERHFTRAATKLGIGQPPLSQQIKDLERELG AQLFRRVPHGAELTEAGKAFYDVVKGMPATATRAVLAAQRVARGESGVLRVGFTASAA FNSVVPGAIRTFKRAYPDVRLQLEEGNTTQLADELNEGSLDVAFLRPGFTGNERFQLR LLSEEPMVIVLAETHPAAACKQIALSILKDEFFLLFPREIGLSLYDAVIKACGKAGFE PKIGQLVPQISSVINLVSAEMGVSMVPDSMRQVNVKGVVYRPVADQMPVAKLALAYRR GDTSPTLRNFILKVTG" gene complement(3280593..3282338) /locus_tag="STM3122" /db_xref="GeneID:1254645" CDS complement(3280593..3282332) /locus_tag="STM3122" /EC_number="3.1.6.1" /note="similar to E. coli putative sulfatase (AAC74571.1); Blastp hit to AAC74571.1 (571 aa), 27% identity in aa 120 - 327, 43% identity in aa 322 - 358, 37% identity in aa 44 - 86, 31% identity in aa 435 - 471" /codon_start=1 /transl_table=11 /product="putative arylsulfatase" /protein_id="NP_462037.1" /db_xref="GI:16766422" /db_xref="GeneID:1254645" /translation="MKKEVTLATLSIIFSGTAHSTQNERPDIIVIIADDMGYSDITPF GGEIPTPNLQAMAENGVRMSQYYTSPMSAPARAMLLTGNTSQQAGIGGMWWYENTIGK EGYELRLTDRVTTMAERFKDAGYNTLMAGKWHLGFTPGSTPKDRGFRHSFALMGGGAS HFDDAVPLGTVEIFHTYYTRDNQRISLPSSFYSSEAYASQINRWISETPREQPIFAWL AFTAPHDPLQAPDEWISRFKSQYEQGYADVYRQRIARLKKLGFLRDDIPLPGLELDKE WQAMTPEQQKYTAKVMQVYAAMIANMDAQIGTVIETLKKTGRDKNTILVFLSDNGVNP AEGFHYESEPDFWKQFDNRYENIGRKNSFISYGPHWADVSNAPYGRYHKTTSGQGGIN TSFMISGPGIIHHGAIDNATMAAYDVAPTLYEFAGIDASKSLSERPTLPMIGVSFKRY LTGESLHAPRTQYGVELHNQAAWIDGEWKLRRLVTVFPQAGNAPWELFNLQRDPLETH NLAANYADKVKILSSAYEAFAKQTMVLYAKGKLIDYVGIDSKTGRYLAVDPQTLQPVP APLAIPLDTKSDQ" regulatory complement(3282333..3282338) /regulatory_class="ribosome_binding_site" /locus_tag="STM3122" /note="putative RBS for STM3122; RegulonDB:STMS1H003159" gene complement(3282401..3283592) /locus_tag="STM3123" /db_xref="GeneID:1254646" CDS complement(3282401..3283585) /locus_tag="STM3123" /note="similar to E. coli putative arylsulfatase regulator (AAC76803.1); Blastp hit to AAC76803.1 (411 aa), 36% identity in aa 4 - 248, 34% identity in aa 230 - 387" /codon_start=1 /transl_table=11 /product="anaerobic sulfatase maturase" /protein_id="NP_462038.1" /db_xref="GI:16766423" /db_xref="GeneID:1254646" /translation="MLNLNTLRQQQIPVMTEYRAQIPFHILAKPIGPACNLACRYCYY PQGETPVEKMNESTLEIFICRYIAAQPASAREINFVWQGGEPLLAGIGFYKKVIALQQ RYAPDGVTISNSLQTNATLLNDAWCRLFRDNNFTIGISLEGSEDLQNHHRPGKRGEAS YPAVLRGITLLQHYRVDFNVLIVVHDDMARHAAAIYDHVVSLGVRYLQFQPLMNEGNA LQQRYQLSADNWGRFMIDIWRQWRKRGDMGRVFVINIEQAWAQYFTHISATCVHSARC GTNLVMEPDGKLYACDHLINSQHYLGQLANNTLAPAVDSATRLPFGIKKSQRRECQRC SVKIVCQGGCPAHINSAGYNRLCSGYYSFFTEILAPLRAWPRDLNGLKAWRADVMGRF SG" regulatory complement(3283587..3283592) /regulatory_class="ribosome_binding_site" /locus_tag="STM3123" /note="putative RBS for STM3123; RegulonDB:STMS1H003160" gene 3284090..3284780 /locus_tag="STM3124" /db_xref="GeneID:1254647" regulatory 3284090..3284095 /regulatory_class="ribosome_binding_site" /locus_tag="STM3124" /note="putative RBS for STM3124; RegulonDB:STMS1H003161" CDS 3284097..3284780 /locus_tag="STM3124" /note="contains a CheY-like receiver domain and a HTH DNA-binding domain; similar to E. coli putative regulator (AAC76545.1); Blastp hit to AAC76545.1 (200 aa), 48% identity in aa 138 - 200" /codon_start=1 /transl_table=11 /product="helix-turn-helix transcriptional regulator" /protein_id="NP_462039.1" /db_xref="GI:16766424" /db_xref="GeneID:1254647" /translation="MSALSTTGHNDGITLHCLQSIAQLIPLSSAVFYRVNAYLKPEAY VLHNISNSTHQQYLEHFQPLDPLSPSRFGQQVVTVATMTPGICARHRHYYHEFMLPNH VCDMIEIFIRRGHRIIAGISLMRDIPFSSEERLRAQAVQPLLGLAIHDSLQEDNDLES ILTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSRTRM SSVQHAQHM" gene complement(3284884..3285445) /locus_tag="STM3125" /db_xref="GeneID:1254648" CDS complement(3284884..3285441) /locus_tag="STM3125" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462040.1" /db_xref="GI:16766425" /db_xref="GeneID:1254648" /translation="MSSVPWFKSTLMNMVLRDLSGWRCEKLTEHSAVLHLNAFTQVIC HAQQKRLFMASIHSCEFRVKGTINYPLQGKIRVHQPGWLKRYPVIFTGSKSTAGLINY LNCFPNLQQALSELDYRRFTLVLHHKEWYCSIELWAASEVVCKMPPLRRYLRLERHQR VLLLSVINMINQAMNQWLQQDTDAR" gene complement(3285419..3286924) /locus_tag="STM3126" /db_xref="GeneID:1254649" CDS complement(3285419..3286918) /locus_tag="STM3126" /note="similar to E. coli proline permease transport protein (AAC73505.1); Blastp hit to AAC73505.1 (457 aa), 25% identity in aa 4 - 415" /codon_start=1 /transl_table=11 /product="putative amino acid transporter" /protein_id="NP_462041.1" /db_xref="GI:16766426" /db_xref="GeneID:1254649" /translation="MFKNRLASHLERGVIGFPTTLASSVGLIMASPVILTVTSGFGSG GDTFALAVLLAFIMMQAQITTFAEAATLIPTTGSVYDYISCGMGRFFAITGALCAYLI VHIFAGTAETILAGVMALVNFESVSEHVAMQHNTWMVGVGMVVVFGLLNAIGVEVFGK VEVFLTFGMWTTLTIFGLCGILLSPVTHHSGWFGAPLDVSNLSGLFGYIGMAMFMFVG CELVTPMAPEIKKAHRTIPRAMALGLLAVAGCMFLYGAAINRQVNNVVVDAANHIFLL DTPMAIPAFANRVMGHVGQYWLGVGLLLAGCATINTLMAAVPRIIYGMALDGALPRFL TWLHPRFKTPVIAIAFGVAIPCLHAWYLNGDIDHIVPLILAAVCAWGVAYLLVTLSVV ILRIRRPDLPRAYRAPWFPLPQIISSVGIIIAIINIAPPGMNSRDVLIPFGIMLGLTA AYALFWTLCVQRVNPFLPLPVEEVVERAMGNYEKRNNEEMTPDVLRPLV" regulatory complement(3285440..3285445) /regulatory_class="ribosome_binding_site" /locus_tag="STM3125" /note="putative RBS for STM3125; RegulonDB:STMS1H003162" regulatory complement(3286919..3286924) /regulatory_class="ribosome_binding_site" /locus_tag="STM3126" /note="putative RBS for STM3126; RegulonDB:STMS1H003163" gene complement(3287127..3287509) /locus_tag="STM3127" /db_xref="GeneID:1254650" CDS complement(3287127..3287501) /locus_tag="STM3127" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462042.1" /db_xref="GI:16766427" /db_xref="GeneID:1254650" /translation="MQAFKLNQPVPELQPIGSVSLLGALPTEGDPQVAVAMIYGKPED VFTCGLFSSTRGGFTMIYPFTEHATVLEGEVELTVAGQEPIRFSPGDSWFVEQGTEVA WKVLTPRFVKHYLAKVESHKQG" regulatory complement(3287504..3287509) /regulatory_class="ribosome_binding_site" /locus_tag="STM3127" /note="putative RBS for STM3127; RegulonDB:STMS1H003164" gene complement(3287516..3288828) /locus_tag="STM3128" /db_xref="GeneID:1254651" CDS complement(3287516..3288817) /locus_tag="STM3128" /note="similar to E. coli probable oxidoreductase (AAC74383.1); Blastp hit to AAC74383.1 (426 aa), 35% identity in aa 7 - 414" /codon_start=1 /transl_table=11 /product="FAD-dependent oxidoreductase" /protein_id="NP_462043.1" /db_xref="GI:16766428" /db_xref="GeneID:1254651" /translation="MNTKIDALNYYGATKKYPLHFPALQDDIDADVVIIGGGFSGINT ALELAEQGITNVVVLEARHLGYGGTGRNGGQVMAGIGHDIEAVKKYVGAAGMETLFKI SNLGAGIIRERIRKYHIDADFVPGYGYLAYNQRQLKTLQQWEKEFKAATPEDDIELYT GKDVQQVIGSDVYCGVLKHMGGGHVHSLNLLLGSAQAANSLGVKIFEYSPVVEVSYGK TVRVRTAMGSVKAAKLLWACDSFLNNLEPEIYKKTLVTYSYQVSTEPLSSELVERISP LRGAFSDIRPVINYYRLTKENRLLFGSATRFLEYTPHDFAAWNRTLLTEVFPYLKDVK IDFAWGGPMACSANLFPQIGTLREHNNVFYVQGYSGFGVTPSHIVCKILAEGINGGSE RYRLMSSIPHATIYGRDSLRLLLVSAGKLIHQTAGFWKGRN" regulatory complement(3288823..3288828) /regulatory_class="ribosome_binding_site" /locus_tag="STM3128" /note="putative RBS for STM3128; RegulonDB:STMS1H003165" gene 3288967..3290463 /locus_tag="STM3129" /db_xref="GeneID:1254652" regulatory 3288967..3288972 /regulatory_class="ribosome_binding_site" /locus_tag="STM3129" /note="putative RBS for STM3129; RegulonDB:STMS1H003166" CDS 3288979..3290463 /locus_tag="STM3129" /EC_number="1.2.1.39" /note="similar to E. coli phenylacetaldehyde dehydrogenase (AAC74467.1); Blastp hit to AAC74467.1 (500 aa), 44% identity in aa 7 - 500" /codon_start=1 /transl_table=11 /product="NAD-dependent phenylacetaldehyde dehydrogenase" /protein_id="NP_462044.1" /db_xref="GI:16766429" /db_xref="GeneID:1254652" /translation="MSDVTLLAEVTTFLRQRHGQFIAGERQAGNGTNFSVTNPATGKI IADVVSATPAQAEEAMQSARRAFDVWRKMPTLQRGALLLKLADTLAAHREELAQLESV CSGKTIMLSRGLELDQSVAFLRYFAGWAGKITGETLNVSLPSMGEERYTAFTQRQPIG VVVGIVPWNFSIMIAIWKLAAALVCGCTIVIKPSEYTPLTLLRVAELAKEAGFPDGVI NVVNGAGGEIAQQLIAHPDCAKVSFTGSVATGEKVRRSATSSGKRVTLELGGKNAALF LNDLTAQAMVNGILEAGYLNQGQICAAAERFYLPQEKLDTVMTLLRQRLSEIVPGSPL DEKTVMGPLANQVQLEKVLRLIQRAREEGDTIVYGGETLPGEGYFLQPTAVKVRSKNS TLMHEETFGPVCSFIGYQNEKEALSHINDSPFGLAASVWSENISKALRYAEDIDAGMV WVNMHTFLDPAVPFGGMKGSGIGREFGSAFIDDYTELKSVMVRY" gene complement(3290599..3290989) /locus_tag="STM3130" /db_xref="GeneID:1254653" CDS complement(3290599..3290979) /locus_tag="STM3130" /note="similar to E. coli orf, hypothetical protein (AAC77282.1); Blastp hit to AAC77282.1 (133 aa), 47% identity in aa 32 - 125" /codon_start=1 /transl_table=11 /product="DNA recombination protein" /protein_id="NP_462045.1" /db_xref="GI:16766430" /db_xref="GeneID:1254653" /translation="MMTPTIPVALFDRLLVEGISPHELVRRKLMCLFNSCAVPGGETL PPLLTRGMPEWHEVNVGDKRVLNWFCRELRAAILRYEPSINMLKVSVKDAHHQTLALS LEAMLQDESEPLRLEIAYSNGRWR" gene complement(3290979..3291471) /locus_tag="STM3131" /db_xref="GeneID:1254654" CDS complement(3290979..3291464) /locus_tag="STM3131" /codon_start=1 /transl_table=11 /product="type VI secretion effector protein" /protein_id="NP_462046.1" /db_xref="GI:16766431" /db_xref="GeneID:1254654" /translation="MDAIFLKLDNIKGESQVEGFEDQIEIMSYSHNVAMQVNNDVSLT ERTSGRAHVGEMSLTKFVDLATPVLNEYCCSGRLIRTAVLTLCRNDDGKMRSLIVYTL TNVLISQLSVSGGAGGKPVETMSLNFTKIEWQITAEKSDGAQQESRTSVWDLAMNQIG K" regulatory complement(3290984..3290989) /regulatory_class="ribosome_binding_site" /locus_tag="STM3130" /note="putative RBS for STM3130; RegulonDB:STMS1H003167" regulatory complement(3291466..3291471) /regulatory_class="ribosome_binding_site" /locus_tag="STM3131" /note="putative RBS for STM3131; RegulonDB:STMS1H003168" gene complement(3292190..3293120) /locus_tag="STM3132" /db_xref="GeneID:1254655" CDS complement(3292190..3293113) /locus_tag="STM3132" /codon_start=1 /transl_table=11 /product="xylanase deacetylase" /protein_id="NP_462047.1" /db_xref="GI:16766432" /db_xref="GeneID:1254655" /translation="MGYLKLPEGKRIAVNLGVDVDAQSLWLGGFNRPSPSFMSRGEFG AQVGVPRLLKLFKENNIKTTFFIPGHTVDTFPEIIKAIFDAGHEIAHHGYYHENPTLV NRDTERRLMDLAFACYKRHFGIRPVGYRSPYWDYSENTLDLLEEAGFLYDSSLMARDL VPYHPQRWQVNWETGNIAGPASAILEIPVSWYLDDFPALAYTGNQEGMSDTDGVLRRW KDIFTYAYHHQENSLYAMALHPQIIGHGHHMMMLLRLIEHIKGHDGVWFATCEEIASV WVDDEEDRQKMLRPDVRGVAPVPDDYGWPGK" regulatory complement(3293115..3293120) /regulatory_class="ribosome_binding_site" /locus_tag="STM3132" /note="putative RBS for STM3132; RegulonDB:STMS1H003169" gene complement(3293152..3294035) /locus_tag="STM3133" /db_xref="GeneID:1254656" CDS complement(3293152..3294030) /locus_tag="STM3133" /codon_start=1 /transl_table=11 /product="putative amidohydrolase" /protein_id="NP_462048.1" /db_xref="GI:16766433" /db_xref="GeneID:1254656" /translation="MPRNFTVSACQYIVTEINTFEDFITKVRILLNKSQGADVVIFPE LFTIELFTLLKKWQERPISHLTLIDQFTDAYKQLFQQEAKERGQFIIAGSHLEQTGAD RYENVAHIWGPDGEHYAHSKTHIFPAERGWYTQEGDKMAVFQLPFAKVGFNICYEAEI PECAATLAEQGVELILTPSATFTEQGFWRVRHCCHARCIENQIYLVHCCLGGNPGGPL PGCWARSSILSPCDVVWKNPQGIIAEAHVNQEDVISGEINLDVLYENRLGGAATTFKD RRRKAGIYNIWPSHIK" regulatory complement(3294030..3294035) /regulatory_class="ribosome_binding_site" /locus_tag="STM3133" /note="putative RBS for STM3133; RegulonDB:STMS1H003170" gene complement(3294426..3295741) /locus_tag="STM3134" /db_xref="GeneID:1254657" CDS complement(3294426..3295730) /locus_tag="STM3134" /note="similar to E. coli transport of hexuronates (AAC76128.1); Blastp hit to AAC76128.1 (472 aa), 47% identity in aa 43 - 454" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_462049.1" /db_xref="GI:16766434" /db_xref="GeneID:1254657" /translation="MKMTKLRWWIIGLVCVGTIVNYLSRSSLSVAAPAMMKELHFDEQ QYSWVVSAFQLCYTIAQPITGYLMDVIGLKIGFFIFALLWSLINMAHALAGGWISLAF LRGLMGLTEASAIPAGIKASAEWFPTKERGIAGGLFNIGTSIGAMLAPPLVVWAMLTF ADSGIGTEMAFVITGGIGVLFAITWFLIYNSPNKHPWITHKELRYIEDGQESYLQDDN KKPAVKEIVKKRNFWALAITRFLADPAWGTLSFWMPLYLINVMHLPLKEIAMFAWLPF LAADFGCVAGGFLAKFFMEKMHMTTINARRCSFTIGAVLMISIGFVSITTNPYVAIAL MSIGGFAHQTLSTVVITMSADLFKKNEVATVAGLAGSAAWMGQLSFNLFMGALVAIIG YGPFFIALSLFDIIGAIILWVLIKDPEKHHPPMTEQPLASHR" regulatory complement(3295736..3295741) /regulatory_class="ribosome_binding_site" /locus_tag="STM3134" /note="putative RBS for STM3134; RegulonDB:STMS1H003171" gene 3296082..3297319 /locus_tag="STM3135" /db_xref="GeneID:1254658" regulatory 3296082..3296090 /regulatory_class="minus_35_signal" /locus_tag="STM3135" /note="putative -35_signal for STM3135; RegulonDB:STMLTH004579" regulatory 3296109..3296117 /regulatory_class="minus_10_signal" /locus_tag="STM3135" /note="putative -10_signal for STM3135; RegulonDB:STMLTH004579" regulatory 3296122..3296127 /regulatory_class="ribosome_binding_site" /locus_tag="STM3135" /note="putative RBS for STM3135; RegulonDB:STMS1H003172" CDS 3296135..3297319 /locus_tag="STM3135" /EC_number="4.2.1.8" /note="mannonate dehydratase. (SW:UXUA_SALTY)" /codon_start=1 /transl_table=11 /product="mannonate dehydratase" /protein_id="NP_462050.1" /db_xref="GI:16766435" /db_xref="GeneID:1254658" /translation="MKQTWRWYGPNDPVTLSDVRQAGATGVVTALHHIPNGEIWSVDE IQKRKAIVEEAGLEWSVVESVPIHEDIKTHTGQYDLWIKNYQQTLRNLAQCGIYTVCY NFMPVLDWTRTDLEYVLPDGSKALRFDQIEFAAFELHILKRPGAEADYTAEEIAQAER RFATMSEEDKARLTRNIIAGLPGAEEGYTLDQFRQHLATYKDIDKAKLREHFAYFLKA IIPVADEVGVRMAVHPDDPPRPILGLPRIVSTIEDMQWMVETVNSMANGFTMCTGSYG VRADNDLVDMIKQFGPRIYFTHLRSTLREENPKTFHEAAHLHGDVDMYEVVKAIVEEE HRRKAEGSDDLIPMRPDHGHQMLDDLKKKTNPGYSAIGRLKGLAEVRGVELAIQRAFF SK" gene 3297418..3298902 /locus_tag="STM3136" /db_xref="GeneID:1254659" regulatory 3297418..3297423 /regulatory_class="ribosome_binding_site" /locus_tag="STM3136" /note="putative RBS for STM3136; RegulonDB:STMS1H003173" CDS 3297430..3298902 /locus_tag="STM3136" /EC_number="1.1.1.57" /note="similar to E. coli D-mannonate oxidoreductase (AAC77279.1); Blastp hit to AAC77279.1 (486 aa), 79% identity in aa 4 - 486" /codon_start=1 /transl_table=11 /product="fructuronate reductase" /protein_id="NP_462051.1" /db_xref="GI:16766436" /db_xref="GeneID:1254659" /translation="MEQNIATAQVSVARPNWDKSRLVSRIVHLGCGAFHRAHQALFTH HLLEKSDSDWGICEVNLMPGNDARLIANLKAQNLLYTVAERGAESTELKIIGSMKEAL HPEFDGHAGILAAMARPETAIVSLTVTEKGYCTDPASGELDVNNPLIQNDLAHPQQPK SAIGYIVEALNMRREQGLKAFTVLSCDNVRENGHVAKAAVLGLAKARDAALAAWIADN VTFPCTMVDRIVPAATEETLQLVADQLGVYDPCAIACEPFRQWVIEDNFVNGRPDWDT VGAQFVADVVPFEMMKLRMLNGSHSFLAYLGYLGGYDTIADTMTNPAYRRAALALMLD EQAPTLSMPEGTDLEGYANLLIARFTNPSLKHRTWQIAMDGSQKLPQRLLDPVRLHLQ QGDDYRRLTLGVAGWMRYVGGVDEQGKTIDVVDPLLAQYQAIHQQYQTPEERVRGLLA IESIFGNDLPKNHEFVQAVTDAYQQLLQNGAKATVEALAK" gene 3298901..3300326 /locus_tag="STM3137" /db_xref="GeneID:1254660" regulatory 3298901..3298906 /regulatory_class="ribosome_binding_site" /locus_tag="STM3137" /note="putative RBS for STM3137; RegulonDB:STMS1H003174" CDS 3298914..3300326 /locus_tag="STM3137" /EC_number="5.3.1.12" /note="similar to E. coli uronate isomerase (AAC76127.1); Blastp hit to AAC76127.1 (470 aa), 67% identity in aa 1 - 468" /codon_start=1 /transl_table=11 /product="glucuronate isomerase" /protein_id="NP_462052.1" /db_xref="GI:16766437" /db_xref="GeneID:1254660" /translation="MATFMTEDFLLKNDIARTLYHKYAAPMPIYDFHCHLSPQEIADD RRFDNLGQIWLEGDHYKWRALRSAGVDESLITGKETSDYEKYMAWANTVPKTLGNPLY HWTHLELRRPFGITGTLFGPDTAESIWTQCNEKLATPAFSARGIMQQMNVRMVGTTDD PIDSLEYHRQIAADDSIDIEVAPSWRPDKVFKIELDGFVDYLRKLEAAADVSITRFDD LRQALTRRLDHFAACGCRASDHGIETLRFAPVPDDAQLDAILGKRLAGETLSELEIAQ FTTAVLVWLGRQYAARGWVMQLHIGAIRNNNTRMFRLLGPDTGFDSIGDNNISWALSR LLDSMDVTNELPKTILYCLNPRDNEVLATMIGNFQGPGIAGKVQFGSGWWFNDQKDGM LRQLEQLSQMGLLSQFVGMLTDSRSFLSYTRHEYFRRILCNLLGQWAQDGEIPDDEAM LSRMVQDICFNNAQRYFTIK" gene complement(3300626..3301691) /locus_tag="STM3138" /db_xref="GeneID:1254661" CDS complement(3300626..3301684) /locus_tag="STM3138" /note="similar to E. coli methyl-accepting chemotaxis protein I, serine sensor receptor (AAC77311.1); Blastp hit to AAC77311.1 (551 aa), 30% identity in aa 319 - 463" /codon_start=1 /transl_table=11 /product="chemotaxis protein" /protein_id="NP_462053.1" /db_xref="GI:16766438" /db_xref="GeneID:1254661" /translation="MFKKVLGLRHWNNNVVKIPPPAAESGANASDVVVDTPEPYERIL CQKILMGISTIDIIRNAIIKSCEQLNIEKERINELNEQNDKARSSLKSLVEFITEIGT TSSDIGCRMGDLNTSLTQINACIKEIQKIANQTNLIAINSAIEAARVGDAGRGFSVIS KEVKNLSEDVKHSSKSVSTLTSVIKDNTARVSEVLDNQQPVIDNITTNINQIVESIGI VIDKSLSMKSVMQYISTVQFLNIVKVDHVIWKMEVYKLLLNKDINSKITMHDQCRLGK WYYGFEGQQFSNYYSFRSLEAPHKEVHTAGHSALNYFAAGDMNAMSQELDRMERSSNE VVNQLEMLAVDLLKETTL" regulatory complement(3301686..3301691) /regulatory_class="ribosome_binding_site" /locus_tag="STM3138" /note="putative RBS for STM3138; RegulonDB:STMS1H003175" gene complement(3302354..3304221) /gene="gsp" /locus_tag="STM3139" /db_xref="GeneID:1254662" CDS complement(3302354..3304210) /gene="gsp" /locus_tag="STM3139" /note="bifunctional; similar to E. coli glutathionylspermidine synthetase/amidase (AAC76024.1); Blastp hit to AAC76024.1 (619 aa), 90% identity in aa 1 - 618" /codon_start=1 /transl_table=11 /product="bifunctional glutathionylspermidine amidase/synthase" /protein_id="NP_462054.1" /db_xref="GI:16766439" /db_xref="GeneID:1254662" /translation="MSKGTTSQDAPFGTLLGYAPGGVAIYSSDYNSLDPWDDDDAAFR SYIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQA FPNGSPRAPEAGALLIWQKGGEFNETGHVAIITQLLDNKIRIAEQNVIHTPLPPGQQW TRELEMVVENGCYTLRDTFDDTTILGWMIQTDDTQYSLSQPDIANQSLAIRGARLPEK GQFDGQWLDERDPLQKAYVQANGHVINQDPYQYFTITESAEQELIKATNELHLMYLHA TDKVLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDERGLKVYEYNADS ASCHTEAGLILEKWAEQGYTGKGHNPAEGLINELAGAWKHSKARPFVHIMQDDDIEED YHAQFMQQALHQAGFASKILRGLGELRWDDAGQLIDGDGRLVNCVWKTWAWETAMEQI REVSETEYAAVPIRTGHPENEVRLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLFP HHRYLLDTDFTVNDELVQTGYAVKPIAGRCGSNIDLVSHQEELLDKTSGKFATQKNIY QQLWCLPKVAGKYIQVCTFTVGGNYGGTCLRGDDSLVIKKESDIEPLIVIKA" regulatory complement(3304216..3304221) /regulatory_class="ribosome_binding_site" /gene="gsp" /locus_tag="STM3139" /note="putative RBS for gsp; RegulonDB:STMS1H003176" gene 3304428..3305303 /gene="yghU" /locus_tag="STM3140" /db_xref="GeneID:1254663" regulatory 3304428..3304433 /regulatory_class="ribosome_binding_site" /gene="yghU" /locus_tag="STM3140" /note="putative RBS for yghU; RegulonDB:STMS1H003177" CDS 3304437..3305303 /gene="yghU" /locus_tag="STM3140" /note="similar to E. coli orf, hypothetical protein (AAC76025.1); Blastp hit to AAC76025.1 (304 aa), 91% identity in aa 17 - 303" /codon_start=1 /transl_table=11 /product="glutathione-dependent disulfide-bond oxidoreductase" /protein_id="NP_462055.1" /db_xref="GI:16766440" /db_xref="GeneID:1254663" /translation="MADNTYQPAKVWTWDKSGGGAFANINRPVSGPTHDKTLPVGKHP LQLYSLGTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGEGDQFSSGFVDINPNSKIP ALRDNSHNPPIRVFESGAILVYLADKFGHFLPQDLAKRTETLNWLFWLQGAAPFLGGG FGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLAHHPYVAGEEYTIADMAIWPWFGN VVLGNVYDAAEFLDAGSYQNVQRWAKQVAERPAVKRGRIVNRTNGPLNEQLHERHDAS DFENHTEDKRQS" gene complement(3305371..3306087) /locus_tag="STM3141" /db_xref="GeneID:1254664" CDS complement(3305371..3306081) /locus_tag="STM3141" /codon_start=1 /transl_table=11 /product="molybdenum ABC transporter substrate-binding protein" /protein_id="NP_462056.1" /db_xref="GI:16766441" /db_xref="GeneID:1254664" /translation="MRILAAGSLRVVWPQLMAAFQADAVCDFGPAGLLRERIEAGEAC DFFASANLAHPQALLESGRALRVAPFTTNRLCLSVRAQAMREGEDWLSLLTRRDLRIG TSTAGCDPSGDYTQQLFSRMGKEGEAVRKRAVALVGGRQTLPLPAGRLAAEWLINHDY TDIFIGYASYAPWLRQVNSLRVVDIPEPYNPVAEYGFACLSEQGKTLADFLLSARARL ILMQHGFSEAPNMTHSQN" gene complement(3306081..3307138) /locus_tag="STM3142" /db_xref="GeneID:1254665" CDS complement(3306081..3307133) /locus_tag="STM3142" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462057.1" /db_xref="GI:16766442" /db_xref="GeneID:1254665" /translation="MNKFLRQLSLLALLFCWPLMSQAARTFTDQIGRQVTVPDTVDRV VVLQHQTLNLLVQMNATDKIVGVMANWKQQLGDGYARLAPELAQKASLGDLTHVDPEK LVALRPQVVFVTNYAPQEMIDKISRLGIPVVAISLRHDIAGEQAKMNPTLADEEQAYN RGLREGITLIGDIVNKPQEAKALIEAMDKGRKMVSDRLQSVPENERVRAYMANPELTT YGSGKYTGLMMAHAGALNVAASSVKGFKQVTMEQVIAWDPQVIFVQNRYPKVVNEILH NPQWQVIDAVKHHRVYLMPDYAKAWGYPMPEAVGIGELWMAKKLYPEKFHDIDMQKAA NDWYQRFYRTDYQGVQ" regulatory complement(3306082..3306087) /regulatory_class="ribosome_binding_site" /locus_tag="STM3141" /note="putative RBS for STM3141; RegulonDB:STMS1H003178" regulatory complement(3307133..3307138) /regulatory_class="ribosome_binding_site" /locus_tag="STM3142" /note="putative RBS for STM3142; RegulonDB:STMS1H003179" gene complement(3307209..3307470) /gene="hybG" /locus_tag="STM3143" /db_xref="GeneID:1254666" CDS complement(3307209..3307457) /gene="hybG" /locus_tag="STM3143" /note="similar to E. coli hydrogenase-2 operon protein: may effect maturation of large subunit of hydrogenase-2 (AAC76026.1); Blastp hit to AAC76026.1 (82 aa), 93% identity in aa 1 - 82" /codon_start=1 /transl_table=11 /product="hydrogenase 2 accessory protein HypG" /protein_id="NP_462058.1" /db_xref="GI:16766443" /db_xref="GeneID:1254666" /translation="MCIGVPGQVLAVGDDIHQLAQVEVCGIKRDVNIALICEGKPADL IGQWVLVHVGFAMSIIDEDEAKATLDALRRMEYDITSA" regulatory complement(3307465..3307470) /regulatory_class="ribosome_binding_site" /gene="hybG" /locus_tag="STM3143" /note="putative RBS for hybG; RegulonDB:STMS1H003180" gene complement(3307485..3307840) /gene="hybF" /locus_tag="STM3144" /db_xref="GeneID:1254667" CDS complement(3307485..3307826) /gene="hybF" /locus_tag="STM3144" /note="similar to E. coli may modulate levels of hydrogenease-2 (AAC76027.1); Blastp hit to AAC76027.1 (113 aa), 84% identity in aa 1 - 113" /codon_start=1 /transl_table=11 /product="hydrogenase maturation nickel metallochaperone HypA" /protein_id="NP_462059.1" /db_xref="GI:16766444" /db_xref="GeneID:1254667" /translation="MHELSLCQSAVEIIQQQAEQHGVARVTGVWLEIGALSCVEERAV RFSFDIACQGTLAQGCELHIDYRPAQAWCWDCSQVVEILRHDAQCPHCHGDRLRVDTG DSLKVKSIEVE" gene complement(3307819..3308320) /gene="hybE" /locus_tag="STM3145" /db_xref="GeneID:1254668" CDS complement(3307819..3308307) /gene="hybE" /locus_tag="STM3145" /note="similar to E. coli member of hyb operon (AAC76028.1); Blastp hit to AAC76028.1 (162 aa), 80% identity in aa 1 - 162" /codon_start=1 /transl_table=11 /product="hydrogenase 2-specific chaperone" /protein_id="NP_462060.1" /db_xref="GI:16766445" /db_xref="GeneID:1254668" /translation="MSETFSGFDTAPVARVQAAFEEIAHRSMHDLSFLHPTMPVHVSD FTLFEGQWTGTVITPWMLSALIFPGPDQIWPRRTVGEKLGLQLPYGTMTFTVGELEGV SQYLACSLMSPLSRSLSPEEGVRLADDCARMLLSLPVSNPDAPQTSRRALLFGRRSCE NA" regulatory complement(3307835..3307840) /regulatory_class="ribosome_binding_site" /gene="hybF" /locus_tag="STM3144" /note="putative RBS for hybF; RegulonDB:STMS1H003181" gene complement(3308300..3308805) /gene="hybD" /locus_tag="STM3146" /db_xref="GeneID:1254669" CDS complement(3308300..3308794) /gene="hybD" /locus_tag="STM3146" /note="similar to E. coli probable processing element for hydrogenase-2 (AAC76029.1); Blastp hit to AAC76029.1 (164 aa), 94% identity in aa 1 - 163" /codon_start=1 /transl_table=11 /product="hydrogenase expression/formation protein" /protein_id="NP_462061.1" /db_xref="GI:16766446" /db_xref="GeneID:1254669" /translation="MRILVLGVGNILLTDEAIGVRIVEALEQRYTLPDFVEILDGGTA GMELLGDMANRDHLIIADAIVSKKNAPGTIMVLRDDEVPALFTNKISPHQLGLADVLS ALRFTGEFPKKLTLVGVIPQSLEPHIGLTPTVEAMIEPALEQVLAALRESGVEAIPKE TAHV" regulatory complement(3308315..3308320) /regulatory_class="ribosome_binding_site" /gene="hybE" /locus_tag="STM3145" /note="putative RBS for hybE; RegulonDB:STMS1H003182" gene complement(3308794..3310511) /gene="hybC" /locus_tag="STM3147" /db_xref="GeneID:1254670" CDS complement(3308794..3310497) /gene="hybC" /locus_tag="STM3147" /EC_number="1.12.7.2" /note="similar to E. coli probable large subunit, hydrogenase-2 (AAC76030.1); Blastp hit to AAC76030.1 (567 aa), 94% identity in aa 1 - 567" /codon_start=1 /transl_table=11 /product="hydrogenase 2 large subunit" /protein_id="NP_462062.1" /db_xref="GI:16766447" /db_xref="GeneID:1254670" /translation="MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEI VKNRDPRDAWMIVQRICGVCTTTHAISSVRAAESALNIDVPVNAQYIRNIILAAHTTH DHIVHFYQLSALDWVDITSALKADPEKASAMLDGVSSWHLNSAQEFTKVQNKIKDLVA SGQLGIFANGYWGHPAMQLPPEVNLIAVAHYLQALECQRDANRVVALLGGKSPHIQNL AVGGVANPINLDSIGTLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAYYPEWLERG KGAVNYLSAPEFPTDGKNGSFLFPGGYITNADLSTYRPITSHSDEFLIKGIQESAKHA WYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLCKLAAGRE STQTKLNEIIALYQKLTGKTLEMAQLHSTLGRIIGRTVHCCELQNILQDQYNALIVNI GKGDYTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGP RNFNDDVGPYEQSLVGTPIADPAKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV L" regulatory complement(3308800..3308805) /regulatory_class="ribosome_binding_site" /gene="hybD" /locus_tag="STM3146" /note="putative RBS for hybD; RegulonDB:STMS1H003183" gene complement(3310494..3311684) /gene="hybB" /locus_tag="STM3148" /db_xref="GeneID:1254671" CDS complement(3310494..3311672) /gene="hybB" /locus_tag="STM3148" /note="similar to E. coli probable cytochrome Ni/Fe component of hydrogenase-2 (AAC76031.1); Blastp hit to AAC76031.1 (392 aa), 96% identity in aa 1 - 392" /codon_start=1 /transl_table=11 /product="Ni/Fe-hydrogenase cytochrome b subunit" /protein_id="NP_462063.1" /db_xref="GI:16766448" /db_xref="GeneID:1254671" /translation="MSHDPKPLGGKIISKPVIIFGPLIVLCMLLIVKRLVFGLGSVSD LNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLG GLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWK VSLKRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSVLTAF IMGFSIVIFEGSLVQAGLKGNGPDEKNLFVKLTNTISVLLAIFVVLRFGELIYRDKLS YAFAGDFYSAMFWIEVVLMVFPLVVLRVAKLRNDSRMLYLSALSALLGCATWRLTYSL VAFNPGGGYHYFPTWEELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA " regulatory complement(3310506..3310511) /regulatory_class="ribosome_binding_site" /gene="hybB" /locus_tag="STM3148" /note="putative RBS for hybC; RegulonDB:STMS1H003184" gene complement(3311662..3312663) /gene="hybA" /locus_tag="STM3149" /db_xref="GeneID:1254672" CDS complement(3311662..3312648) /gene="hybA" /locus_tag="STM3149" /note="intitally thought to be hydrogenase-2 small subunit which now identified as hybO; similar to E. coli hydrogenase-2 small subunit (AAC76032.1); Blastp hit to AAC76032.1 (328 aa), 95% identity in aa 1 - 328" /codon_start=1 /transl_table=11 /product="hydrogenase 2 protein HybA" /protein_id="NP_462064.1" /db_xref="GI:16766449" /db_xref="GeneID:1254672" /translation="MNRRDFIKAASGGALLLGAAPSVSHAAAENRPPIPGSLGMLYDS TLCVGCQACVTKCQDINFPARNPEGEQTWSNNDKLSPYTNNIIQVWRSGTGVNKDQEE NGYAYIKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVP KYDYNNPFGALHKCELCNQKGVERLDKGGLPGCVEVCPAGAVIFGTREELMAEAKKRL ALKPGSEYHYPRQTLKTDDTYLHTVPKYYPHLYGEKEGGGTQVLVLTGVPYEDLDLPK LDDLSTGARSEHVQHTLYKGMILPLAALAGLTVLVRRNSKNDHHDGGDDHES" regulatory complement(3311679..3311684) /regulatory_class="ribosome_binding_site" /gene="hybA" /locus_tag="STM3149" /note="putative RBS for hybB; RegulonDB:STMS1H003185" gene complement(3312651..3313785) /gene="hypO" /locus_tag="STM3150" /db_xref="GeneID:1254673" CDS complement(3312651..3313769) /gene="hypO" /locus_tag="STM3150" /EC_number="1.12.7.2" /note="similar to E. coli putative hydrogenase subunit (AAC76033.1); Blastp hit to AAC76033.1 (372 aa), 96% identity in aa 1 - 372" /codon_start=1 /transl_table=11 /product="hydrogenase 2 small subunit" /protein_id="NP_462065.1" /db_xref="GI:16766450" /db_xref="GeneID:1254673" /translation="MTGDNTLITSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVS NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAADGAAAIIAIGSCSAW GGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGTPPKLDAKN RPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHRQGWCLYHLGCKGPETWGNCSTLQ FCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLAHVENQTPRSEKPDVNMKEGGNISA GAVGLLGGVVGLVAGVSVMAVRELGRQQKKDNADSRGE" regulatory complement(3312658..3312663) /regulatory_class="ribosome_binding_site" /gene="hybA" /locus_tag="STM3149" /note="putative RBS for hybA; RegulonDB:STMS1H003186" regulatory complement(3313780..3313785) /regulatory_class="ribosome_binding_site" /gene="hypO" /locus_tag="STM3150" /note="putative RBS for hypO; RegulonDB:STMS1H003187" gene complement(3313959..3314257) /gene="yghW" /locus_tag="STM3151" /db_xref="GeneID:1254674" CDS complement(3313959..3314246) /gene="yghW" /locus_tag="STM3151" /note="similar to E. coli orf, hypothetical protein (AAC76034.1); Blastp hit to AAC76034.1 (95 aa), 78% identity in aa 1 - 94" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462066.1" /db_xref="GI:16766451" /db_xref="GeneID:1254674" /translation="MNNHFGKGLMAGLHAPYAYSAHHAVNFCSEYKRGFVLGFTHRMF EKTGDRQLSAWEAGILTRRYGLDKEMVMDFFKENHSGMAVRFFMAGYRLEG" regulatory complement(3314252..3314257) /regulatory_class="ribosome_binding_site" /gene="yghW" /locus_tag="STM3151" /note="putative RBS for yghW; RegulonDB:STMS1H003188" gene complement(3314331..3315981) /locus_tag="STM3152" /db_xref="GeneID:1254675" CDS complement(3314331..3315974) /locus_tag="STM3152" /note="similar to E. coli methyl-accepting chemotaxis protein I, serine sensor receptor (AAC77311.1); Blastp hit to AAC77311.1 (551 aa), 43% identity in aa 1 - 551" /codon_start=1 /transl_table=11 /product="putative methyl-accepting chemotaxis protein" /protein_id="NP_462067.1" /db_xref="GI:16766452" /db_xref="GeneID:1254675" /translation="MRLLQNFTIRMVMLTILGLFCLLWSGVGLYSVHALSEVSEGNDI DRHLVRQMTVLSQGNDQYFRFVTRLSRAMDVKIGGGTPDFAPARQSLENMRQKLEEMK ALSPGPMNPDISREVLSNWQALLEKGVVPQMQLAQQGSLTAWSEHASTVTPALSRAFG ASAERFSHEAGAMLDNTRVMVDGKTYTIRILLITAVILGIAILIFTDRYLVAMMVKPL ERIRQQFQRIAQGDLSQPIEALGRNCVGRLVPLLRAMQDSLREAVSTIRAGSDNIWRG ATEISTGNNDLSSRTEEQAAALEETAASMEQLTATVKMNAEHARQASQLADAASLTAG KGGELVSDVVETMNGISASSQQIAEITTVINSIAFQTNILALNAAVEAARAGEQGRGF AVVAGEVRNLASRSAGAAKEIEALIGESVRRVAQGAQLVQETGATMDAILRGVTEVTT IMKQIASASEEQSKGISQVGVAITQMDSVTQQNAALVEQVSAAAAALERQTEDLQRSV QQFRLSASEPQQRVTAKAAPGVQRMASAPAQSTDEWVSF" regulatory complement(3315976..3315981) /regulatory_class="ribosome_binding_site" /locus_tag="STM3152" /note="putative RBS for STM3152; RegulonDB:STMS1H003189" gene complement(3316281..3316784) /gene="yqhA" /locus_tag="STM3153" /db_xref="GeneID:1254676" CDS complement(3316281..3316775) /gene="yqhA" /locus_tag="STM3153" /note="similar to E. coli orf, hypothetical protein (AAC76038.1); Blastp hit to AAC76038.1 (164 aa), 94% identity in aa 1 - 164" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462068.1" /db_xref="GI:16766453" /db_xref="GeneID:1254676" /translation="MERFLENVMYASRWLLAPVYFGLSLALIALALKFFQEILHVLPN VFALAEADLILVLLSLVDMTLVGGLLVMVMFSGYENFVSQLDISAGKEKLNWLGKMDA TSLKNKVAASIVAISSIHLLRVFMDAKNVPDNKLMWYVIIHLTFVLSAFVMGYLDRLT RHNH" regulatory complement(3316779..3316784) /regulatory_class="ribosome_binding_site" /gene="yqhA" /locus_tag="STM3153" /note="putative RBS for yqhA; RegulonDB:STMS1H003190" gene complement(3317055..3317570) /locus_tag="STM3154" /db_xref="GeneID:1254677" CDS complement(3317055..3317570) /locus_tag="STM3154" /codon_start=1 /transl_table=11 /product="putative ATP-dependent RNA helicase-like protein" /protein_id="NP_462069.1" /db_xref="GI:16766454" /db_xref="GeneID:1254677" /translation="MEPAMNSIFYSVIILLLLTGAILFLMWEVNKKRPGGKIVNLNQT EPMTKEEGEDHFSVLMNSITPVWYWRVNHEYIDFLHATIKRMTMTELNETPGLFDAQR RCSDLNSAVYKYYDNIKKRCLNGEKVPYSDLDVLNLRQCFREFSLEAYPALVALVWPE YQRPQVNPDEI" gene 3317656..3318072 /locus_tag="STM3155" /db_xref="GeneID:1254678" regulatory 3317656..3317661 /regulatory_class="ribosome_binding_site" /locus_tag="STM3155" /note="putative RBS for STM3155; RegulonDB:STMS1H003191" CDS 3317662..3318072 /locus_tag="STM3155" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462070.1" /db_xref="GI:16766455" /db_xref="GeneID:1254678" /translation="MLPEHLVSSHFRLSSPPPEATENSKNLPKGKTKLSDYEPDILIS ANAAGQHRNVLFEERDRHIKERLYCVAKIETFARLINALQAEGDIDAQTLSKILADKT AMINEKGNAIWLNLITRETDMPLFYSLEDKDERS" gene 3318053..3318463 /locus_tag="STM3156" /db_xref="GeneID:1254679" regulatory 3318053..3318058 /regulatory_class="ribosome_binding_site" /locus_tag="STM3156" /note="putative RBS for STM3156; RegulonDB:STMS1H003192" CDS 3318059..3318463 /locus_tag="STM3156" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462071.1" /db_xref="GI:16766456" /db_xref="GeneID:1254679" /translation="MKEVEDNNVYLALDNHKSDEFILKQNLAALIASKNATLEKVTQE VVSIPAALVRLKWQNRREMYALQVKEEIYGATINAIIEQHPELRDKIMSRLESDWQHL LARETATLRLTRKLSDGDYRTRNVTTVARQEK" gene 3318573..3319471 /gene="yghA" /locus_tag="STM3157" /db_xref="GeneID:1254680" regulatory 3318573..3318578 /regulatory_class="ribosome_binding_site" /gene="yghA" /locus_tag="STM3157" /note="putative RBS for yghA; RegulonDB:STMS1H003193" CDS 3318587..3319471 /gene="yghA" /locus_tag="STM3157" /note="similar to E. coli putative oxidoreductase (AAC76039.1); Blastp hit to AAC76039.1 (294 aa), 93% identity in aa 1 - 294" /codon_start=1 /transl_table=11 /product="NAD(P)-dependent oxidoreductase" /protein_id="NP_462072.1" /db_xref="GI:16766457" /db_xref="GeneID:1254680" /translation="MSHLYDPTTQYYTGEYPKQKQPAPGVQAKMTPVPDCGEKSYVGS GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKA VLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVN VFALFWITQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVA EKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQE SSYVTAEVHGVCGGEHLG" gene complement(3319584..3320023) /gene="exbD" /locus_tag="STM3158" /db_xref="GeneID:1254681" CDS complement(3319584..3320009) /gene="exbD" /locus_tag="STM3158" /note="tonB-dependent uptake of B colicins; similar to E. coli uptake of enterochelin; tonB-dependent uptake of B colicins (AAC76041.1); Blastp hit to AAC76041.1 (141 aa), 93% identity in aa 1 - 141" /codon_start=1 /transl_table=11 /product="TonB system transporter ExbD" /protein_id="NP_462073.1" /db_xref="GI:16766458" /db_xref="GeneID:1254681" /translation="MAMRLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVD VKVNLPASTSTPQPRPEKPVYLSVKADNTMFIGNDPVTDDTMIAELTALTEGKKDTTI FFRADKTVEYETLMKVMDMLHQAGYLKIGLVGEETAKAK" gene complement(3320016..3320763) /gene="exbB" /locus_tag="STM3159" /db_xref="GeneID:1254682" CDS complement(3320016..3320750) /gene="exbB" /locus_tag="STM3159" /note="tonB-dependent uptake of B colicins; biopolymer transport EXBB protein. (SW:EXBB_SALTY)" /codon_start=1 /transl_table=11 /product="tonB-system energizer ExbB" /protein_id="NP_462074.1" /db_xref="GI:16766459" /db_xref="GeneID:1254682" /translation="MGNNLMQTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSK SVEFFTQKRRLKREQLQLADARSLDQASDIAAGFSAKSLSAQLINEAQNELELSQGSE DNEGIKERTGFRLERRVAAVGRYMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIA QTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNIFARQIGSYKATLGDVAAQVLL LQSRDLDLNASASAQPVRAAQKLRVG" regulatory complement(3320018..3320023) /regulatory_class="ribosome_binding_site" /gene="exbD" /locus_tag="STM3158" /note="putative RBS for exbD; RegulonDB:STMS1H003194" gene complement(3320743..3320892) /locus_tag="STM3160" /db_xref="GeneID:1254683" CDS complement(3320743..3320892) /locus_tag="STM3160" /note="similar to E. coli orf, hypothetical protein (AAC76043.1); Blastp hit to AAC76043.1 (51 aa), 83% identity in aa 3 - 51" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462075.1" /db_xref="GI:16766460" /db_xref="GeneID:1254683" /translation="MAFLMRKRKEKAVKVRQYVNSNENDYQFDVVLILLCSDFVICVL EIQSG" regulatory complement(3320758..3320763) /regulatory_class="ribosome_binding_site" /locus_tag="STM3160" /note="putative RBS for exbB; RegulonDB:STMS1H003195" gene 3320989..3322189 /gene="metC" /locus_tag="STM3161" /db_xref="GeneID:1254684" regulatory 3320989..3320994 /regulatory_class="ribosome_binding_site" /gene="metC" /locus_tag="STM3161" /note="putative RBS for metC; RegulonDB:STMS1H003196" CDS 3321002..3322189 /gene="metC" /locus_tag="STM3161" /EC_number="4.4.1.8" /note="beta-cystathionase; cystathionine beta-lyase. (SW:METC_SALTY)" /codon_start=1 /transl_table=11 /product="cystathionine beta-lyase" /protein_id="NP_462076.1" /db_xref="GI:16766461" /db_xref="GeneID:1254684" /translation="MTDKQLDTKLVNAGRSKKYTLGSVNSVIQRASSLVFDTVEAKKH ATRNLANGELFYGRRGTLTHFSLQEAMCELEGGAGCALFPCGAAAVANTILAFVEQGD HILMTNTAYEPSQDFCSKILGKLGVTTSWFDPLIGADITQHIQPNTKVVFLESPGSIT MEVHDIPSIVSAVRRVAPEAVIMIDNTWAAGVLFKALEFDIDISIQAGTKYLIGHSDA MVGTAVANARCWEQLRENAYLMGQMLDADTAYMTSRGLRTLGVRLRQHQESSLKIAAW LANHPQVARVNHPALPGSKGHAFWKRDFTGSSGLFSFVLNKKLTEAELSAYLDNFSLF SMAYSWGGYESLIIANQPEQIAAIRPAGGVDFTGTLVRVHIGLESVDDLIADLAAGFA RIV" gene 3322318..3322988 /gene="yghB" /locus_tag="STM3162" /db_xref="GeneID:1254685" regulatory 3322318..3322323 /regulatory_class="ribosome_binding_site" /gene="yghB" /locus_tag="STM3162" /note="putative RBS for yghB; RegulonDB:STMS1H003197" CDS 3322329..3322988 /gene="yghB" /locus_tag="STM3162" /note="hypothetical protein in metC 3'region. (SW:YGHB_SALTY)" /codon_start=1 /transl_table=11 /product="DedA family protein" /protein_id="NP_462077.1" /db_xref="GI:16766462" /db_xref="GeneID:1254685" /translation="MAVIQDIIAALWQHDFAALANPHVVSVVYFVMFATLFLENGLLP ASFLPGDSLLLLAGALIAQDVMHFLPTIGILTAAASLGCWLSYIQGRWLGNTRTVKGW LAQLPAKYHQRATCMFDRHGLLALLAGRFLAFVRTLLPTMAGISGLSNRRFQFFNWLS GLLWVTVVTSFGYALSMIPFVKRHEDQVMTFLMILPVALLVAGLLGTLVVVIKKKYCN A" gene complement(3323052..3323983) /gene="yqhC" /locus_tag="STM3163" /db_xref="GeneID:1254686" CDS complement(3323052..3323969) /gene="yqhC" /locus_tag="STM3163" /note="similar to E. coli putative ARAC-type regulatory protein (AAC76046.1); Blastp hit to AAC76046.1 (375 aa), 83% identity in aa 72 - 375" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="NP_462078.1" /db_xref="GI:16766463" /db_xref="GeneID:1254686" /translation="MKKWRVMNREAICLQLADKINHLKNNDKIISERLAGIRLLYGVE PGPRTPVMYQPGIIFLFSGHKIGYINKRKFRYDANEYLLLTVPLPFECETWATPEVPL AGIRLDIDVLQLQELLMDIGEDERFQLPMAASGINSATLSDEILCAVERLLDVMERPL DARILGKQIIREILYHVLMGPRGGALLALVSRQTHFSLISRVLKQIEMKYTENLNVEQ LAAEANMSVSAFHHNFKAVTSTSPLQYLKSYRLHKARMMMIHDGMKASAAAMRVGYES ASQFSREFKRYFGVTPGEDVARMRTMQGS" regulatory complement(3323978..3323983) /regulatory_class="ribosome_binding_site" /gene="yqhC" /locus_tag="STM3163" /note="putative RBS for yqhC; RegulonDB:STMS1H003198" gene 3324131..3325307 /gene="yqhD" /locus_tag="STM3164" /db_xref="GeneID:1254687" regulatory 3324131..3324136 /regulatory_class="ribosome_binding_site" /gene="yqhD" /locus_tag="STM3164" /note="putative RBS for yqhD; RegulonDB:STMS1H003199" CDS 3324144..3325307 /gene="yqhD" /locus_tag="STM3164" /note="similar to E. coli putative oxidoreductase (AAC76047.1); Blastp hit to AAC76047.1 (387 aa), 88% identity in aa 1 - 387" /codon_start=1 /transl_table=11 /product="NADH-dependent alcohol dehydrogenase" /protein_id="NP_462079.1" /db_xref="GI:16766464" /db_xref="GeneID:1254687" /translation="MNNFKLHTPTRILFGKGAIVDLRDQIPQDARVLITYGGGSVKKT GVLAQVQEALKGLDVREFGGIEPNPSYETLMKAVQLVRDENITFLLAVGGGSVLDGTK FIAAAAQYTDGVDPWHILETGGTEIRSAIPMGSVLTLPATGSESNAGAVISRKTTGDK QAFHSSFVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTYPVNGKIQDRFAE GILLTLIEEGPKALQEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAM HGLDHAQTLAIVLPALWNEKRDVKRAKLLQYAERVWNITDGSDDERIDAAIAATRRFF EQMGVPTHLSDYGLDGSTIPALLAKLEAHGCINLGENQDITLDVSRRIYEAAR" gene 3325401..3326240 /gene="yqhE" /locus_tag="STM3165" /db_xref="GeneID:1254688" regulatory 3325401..3325406 /regulatory_class="ribosome_binding_site" /gene="yqhE" /locus_tag="STM3165" /note="putative RBS for yqhE; RegulonDB:STMS1H003200" CDS 3325413..3326240 /gene="yqhE" /locus_tag="STM3165" /note="similar to E. coli orf, hypothetical protein (AAC76048.1); Blastp hit to AAC76048.1 (236 aa), 93% identity in aa 1 - 236" /codon_start=1 /transl_table=11 /product="2,5-didehydrogluconate reductase A" /protein_id="NP_462080.1" /db_xref="GI:16766465" /db_xref="GeneID:1254688" /translation="MANPTIIRLQDGNVMPQLGLGVWKASNEEVIAAIHKALEVGYRS IDTATAYQNEEGVGKALKAASVAREELFITTKLWNDDQKRPREALQESLKKLQLDYLD LYLMHWPVPAIDHYVDAWKGMIALQKEGLVKSIGVCNFQIHHLQRLIDETGVTPVINQ IELHPLMQQRQLHAWNATHKIQTESWSPLAQGGEGVFDQKVIRELADKYGKTPAQIVI RWHLDCGLVVIPKSVTPSRIAENFAVWDFRLDKDELGEIAKLDQGKRLGPDPDQFGG" gene 3326406..3327890 /locus_tag="STM3166" /db_xref="GeneID:1254689" CDS 3326406..3327890 /locus_tag="STM3166" /note="similar to E. coli putative membrane pump protein (AAC73857.1); Blastp hit to AAC73857.1 (477 aa), 36% identity in aa 7 - 471" /codon_start=1 /transl_table=11 /product="putative cation transporter" /protein_id="NP_462081.3" /db_xref="GI:1109557739" /db_xref="GeneID:1254689" /translation="MHIKYLWMCDCGGKKSQGVKWLPFILILVIAAGLWQLTPPSGLS APAWHSAIIFVATIASIVAKVLPIGAVGIIGITVFALAYAAGDKTASGAITTALSELN SSLIWLIVVAFMIARGFIKTGLGRRIALQMIRLLGKRTLGLAYGLAFADLILSPAMPS NTARCGGVIYPIADSLARSFDSHPEDESRSKIGTFLITCIGNVNDVTAALFMTGYTGN LLAVKLAANAGVTLSWGSWFIAALLPCLVSFLIVPLLVYWLTRPEIKHTPDAPDLARK ELAQMGSMTRGEWLMLATVGVLLVLWIFGSSLGVDATTASFVGLSILLLSGVLTWEDV KSEKGAWDTLIWFAALLMMANQLKKLGFTSWFGNLIGDSIGSTMHGTSWIIILLLLNA AYFYTHYFFASGNAQIAALYAVFLGVGLHLNIPAAPMALMLAFTSSLYCSLTQYTHAR GPILFGAGYVPTGVWWRTGFIISLFNQAVFLTVGLAWWKVLGLY" gene 3327929..3328390 /locus_tag="STM3167" /db_xref="GeneID:1254690" regulatory 3327929..3327934 /regulatory_class="ribosome_binding_site" /locus_tag="STM3167" /note="putative RBS for STM3167; RegulonDB:STMS1H003201" CDS 3327935..3328390 /locus_tag="STM3167" /codon_start=1 /transl_table=11 /product="diadenosine tetraphosphate hydrolase" /protein_id="NP_462082.1" /db_xref="GI:16766467" /db_xref="GeneID:1254690" /translation="MTCIFCQIVEGKAPCHKVWEDEHHLAFLSIFPNTDGFTVVIPKK HYPSYAFDLPPQALADLMLATQKVAKKLDKAFPDVSRTGMFFEGFGVDHVHSKLSPMH GTGDLTHWKPIESRQNKFFEQYEGYLSSHDHERADDEKLAALAARIREA" gene complement(3328945..3331127) /gene="ygiR" /locus_tag="STM3168" /db_xref="GeneID:1254691" CDS complement(3328945..3331116) /gene="ygiR" /locus_tag="STM3168" /note="similar to E. coli orf, hypothetical protein (AAC76051.1); Blastp hit to AAC76051.1 (413 aa), 46% identity in aa 1 - 26" /codon_start=1 /transl_table=11 /product="YgiQ family radical SAM protein" /protein_id="NP_462083.1" /db_xref="GI:16766468" /db_xref="GeneID:1254691" /translation="MSAISLIQPDRDLFSWPQYWAACFGPAPFLPMSRDEMDQLGWDS CDIILVTGDAYVDHPSFGMAICGRMLEAQGFRVGIIAQPDWNSKDDFMRLGKPNLFFG VTAGNMDSMINRYTADRKLRHDDAYTPDNVAGKRPDRATLVYTQRCKEAWKDVPVILG GIEASLRRTAHYDYWSDTVRRSVLVDSKADMLMFGNGERPLVEVAHRLAMGETIDQIR DVRNTAIMVKEALPGWSGVDSTRLDTPGKIDPIPHPYGEDLPCADNKPVAPKKQEAKA ITVQPPRPKPWEKTYILLPSFEKVKGDKVLYAHASRILHHETNPGCARALMQKHGDRY VWINPPAIPLSTEEMDSVFALPYQRVPHPAYGNARIPAYEMIRFSINIMRGCFGGCSF CSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANMYMLRCKSPRAE QTCRRLSCVYPDICPHMDTDHTPTINLYRRARELKGIKKILIASGVRYDIAVEDPRYI KELASHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDLYSKQAGKEQYLIPY FISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLANSTTMYYTGKNPLGKIGYK SEDVVVPKGDRQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGGRRECLVPAPTIE EMREARRQNRNTRPALTKHTPVEHQRQGLAANKKRGKGAGR" regulatory complement(3331122..3331127) /regulatory_class="ribosome_binding_site" /gene="ygiR" /locus_tag="STM3168" /note="putative RBS for ygiR; RegulonDB:STMS1H003202" gene 3331597..3332587 /locus_tag="STM3169" /db_xref="GeneID:1254692" regulatory 3331597..3331602 /regulatory_class="ribosome_binding_site" /locus_tag="STM3169" /note="putative RBS for STM3169; RegulonDB:STMS1H003203" CDS 3331604..3332587 /locus_tag="STM3169" /note="similar to E. coli putative solute-binding transport protein (AAC76603.1); Blastp hit to AAC76603.1 (328 aa), 28% identity in aa 7 - 320" /codon_start=1 /transl_table=11 /product="C4-dicarboxylate ABC transporter substrate-binding protein" /protein_id="NP_462084.1" /db_xref="GI:16766469" /db_xref="GeneID:1254692" /translation="MKNTRSFTTSAVLLAGCLLLAFPALAKTTLKLSHNQDKSHAVHK AMSYLADKAKAYSDGELNIRIYPNATLGNERESLELMNSGALQMVKVNAASLESFAPE YSVFSLPFLFRDRDHYYNVLKSDLGKRILASSESKGFVGLTWYDGGARSFYAGKPITQ PDDLAGMKIRVQQSPSAIAMVKALGGVPTPMAQGELYTALQQGVVDGGENNPVVYADM RHAEVAKFYSRDEHTMVPDVLVISTKVLNKLSDKERKALYKAADESMQQMKDVIWPAA EKEAYESMKAMNATVVDIDKSAFKQRVKPLFDEFRAKDAQSAKDLEYIENM" gene 3332622..3333111 /locus_tag="STM3170" /db_xref="GeneID:1254693" regulatory 3332622..3332627 /regulatory_class="ribosome_binding_site" /locus_tag="STM3170" /note="putative RBS for STM3170; RegulonDB:STMS1H003204" CDS 3332629..3333111 /locus_tag="STM3170" /note="similar to E. coli orf, hypothetical protein (AAC76601.1); Blastp hit to AAC76601.1 (157 aa), 26% identity in aa 1 - 135" /codon_start=1 /transl_table=11 /product="C4-dicarboxylate ABC transporter permease" /protein_id="NP_462085.1" /db_xref="GI:16766470" /db_xref="GeneID:1254693" /translation="MRILTNALNKILAGCCCIILAVMVACVSWQVAARFIFNAPSSTL DEFTQILFMWMILLGGVYTAGLKKHLAIDLLAQKLSRTPALMLDSIIQVIITVFALIF MVYGGDIIVEKAAHVSQMSPVLKWPMDKVYWVMPISGVILVYYTIVNVIDNYHQRHLR " gene 3333116..3334429 /gene="ygiK" /locus_tag="STM3171" /db_xref="GeneID:1254694" regulatory 3333116..3333121 /regulatory_class="ribosome_binding_site" /gene="ygiK" /locus_tag="STM3171" /note="putative RBS for ygiK; RegulonDB:STMS1H003205" CDS 3333122..3334429 /gene="ygiK" /locus_tag="STM3171" /note="possible transporter; hypothetical 46.1 Kda protein in plsC 3'region. (SW:YGIK_SALTY)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462086.1" /db_xref="GI:16766471" /db_xref="GeneID:1254694" /translation="MDFEYIYPIIVLFGSFAIILAVGVPITFAIGLSSLFSILIALPP DAAISVISQKMTVGLDGFTLLAIPFFVLAGNIMNTGGIARRLVNLAQALVGRLPGSLA HCNILANTLFGAISGSAVASAAAVGGIMSPLQEKEGYSPAFSTAINVASAPIGLMIPP SNVLIVYSLASGGTSVAALFLAGYLPGILTALALMTVAALYAHRHHYPVAERINLRQF LSVFRDSLPSLLLIFIIIGGIIGGVFTPTEASAIAVIYSLALAAIYREINVSKLRDIL LDSVVTSSIVLLLVGCSMGMSWAMTNADVPELINEMITSVSENKWVILLIINLILLFV GTFMDITPAILIFTPIFLPIAQHLGIDPVHFGIIMVFNLTIGLCTPPVGTILFVGCSI GKISIDKVVKPLLPMFLALFVVMAMICYFPQLSLLLPTLFAPS" gene complement(3334474..3335897) /gene="sufI" /locus_tag="STM3172" /db_xref="GeneID:1254695" CDS complement(3334474..3335886) /gene="sufI" /locus_tag="STM3172" /note="putative periplasmic protein; SUFI protein precursor. (SW:SUFI_SALTY)" /codon_start=1 /transl_table=11 /product="cell division protein FtsP" /protein_id="NP_462087.1" /db_xref="GI:16766472" /db_xref="GeneID:1254695" /translation="MSFSRRQFLQASGIALCAGAIPLRANAAGQQQPLPVPPLLESRR GQPLFMTLQRAHWSFTQGTRAPVWGVNGRYLGPTIRVWKGDDVKLIYSNRLAENVSMT VAGLLVPGPLMGGPARMMSPNADWAPVLPIRQSAATLWYHANTPNRTAQQVYNGLAGM WLVEDDISKTLPIPNHYGVDDFPVIIQDKRLDNFGTPEYSEPGSGGFVGDTLLVNGAQ SPYVEVSRGWVRLRLLNASNSRRYQLQMSDGRALHVISGDQGFLPAPVSVKQLSLAPG ERREILVDMTNGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTD NLPMRLLPTEIMSGAPVRSRDISLGDDPGINGQLWDVNRIDITAQQGTWERWTVRADM PQSFHIEGVSFLIRNVNGAMPFPEDRGWKDTVWVDGQVELLVYYGQPSWPHFPFYFNS QTLEMADRGSIGQMLVNPAS" regulatory complement(3335892..3335897) /regulatory_class="ribosome_binding_site" /gene="sufI" /locus_tag="STM3172" /note="putative RBS for sufI; RegulonDB:STMS1H003206" gene complement(3335960..3336706) /gene="plsC" /locus_tag="STM3173" /db_xref="GeneID:1254696" CDS complement(3335960..3336697) /gene="plsC" /locus_tag="STM3173" /EC_number="2.3.1.51" /note="1-acyl-SN-glycerol-3-phosphate acyltransferase. (SW:PLSC_SALTY)" /codon_start=1 /transl_table=11 /product="1-acylglycerol-3-phosphate O-acyltransferase" /protein_id="NP_462088.1" /db_xref="GI:16766473" /db_xref="GeneID:1254696" /translation="MLYIFRLIVTVIYSILVCVFGSIYCLFSPRNPKHVATFGHMFGR LAPLFGLKVECRKPADAENYGNAIYIANHQNNYDMVTAANIVQPPTVTVGKKSLLWIP FFGQLYWLTGNLLIDRNNRAKAHSTIAAVVNHFKKRRISIWMFPEGTRSRGRGLLPFK TGAFHAAIAAGVPIIPVCVSNTSNKVNLNRLNNGLVIVEMLPPVDVSEYGKDQVRELA AHCRALMEQKIAELDKEVAEREATGKV" regulatory complement(3336701..3336706) /regulatory_class="ribosome_binding_site" /gene="plsC" /locus_tag="STM3173" /note="putative RBS for plsC; RegulonDB:STMS1H003207" gene complement(3336954..3339227) /gene="parC" /locus_tag="STM3174" /db_xref="GeneID:1254697" CDS complement(3336954..3339212) /gene="parC" /locus_tag="STM3174" /EC_number="5.99.1.-" /note="topoisomerase IV subunit A. (SW:PARC_SALTY)" /codon_start=1 /transl_table=11 /product="DNA topoisomerase IV, subunit A" /protein_id="NP_462089.1" /db_xref="GI:16766474" /db_xref="GeneID:1254697" /translation="MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRR IVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG QGNWGAPDDPKSFAAMRYTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPAR LPNILLNGTTGIAVGMATDIPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTE AEIITPRAEIRKIYENGRGSVRMRAVWTKEDGAVVISALPHQVSGAKVLEQIAAQMRN KKLPMVDDLRDESDHENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGL DGRPAVKNLLEILTEWLAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEI IRSEDEPKPALMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI LASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMG WVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQ GEPLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITL PENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKG DDGLAHLYVLPPQSTLTIHVGKRKIKLRPEELQKVVGERGRRGTLMRGLQRIDRIEID SPHRVSHGDSEE" regulatory complement(3339222..3339227) /regulatory_class="ribosome_binding_site" /gene="parC" /locus_tag="STM3174" /note="putative RBS for parC; RegulonDB:STMS1H003208" gene complement(3339323..3340196) /locus_tag="STM3175" /db_xref="GeneID:1254698" CDS complement(3339323..3340189) /locus_tag="STM3175" /note="araC family; similar to E. coli orf, hypothetical protein (AAC76059.1); Blastp hit to AAC76059.1 (160 aa), 54% identity in aa 6 - 159" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="NP_462090.1" /db_xref="GI:16766475" /db_xref="GeneID:1254698" /translation="MNDLISAAYSERLRRVCDHIERHLDEPLSIEALSRMAHSSPFHF HRQFTTWSGLPLYRYIQWLRLRRASWRLAFNPQDKVIDIALDAGFQNPESFTRAFKTA FGQSPRRFRQSPDWLAWHQRVPKLALQEQHVMDVKIVEFPPTRVAMLTHLGHPDKVNA SAAKFIAWRRETGQSPIASSQTFGIAWHDPQTTPPAQFRFDICGSVRQPIAENDVGVV NSEIPGGRCAVVRHQGSLDSLPESVWYLFREWLPASGETPRDFPVFFQYLNFVHEVAE HELLTDIYLPLR" regulatory complement(3340191..3340196) /regulatory_class="ribosome_binding_site" /locus_tag="STM3175" /note="putative RBS for STM3175; RegulonDB:STMS1H003209" gene complement(3340261..3340668) /gene="ygiW" /locus_tag="STM3176" /db_xref="GeneID:1254699" CDS complement(3340261..3340653) /gene="ygiW" /locus_tag="STM3176" /note="similar to E. coli orf, hypothetical protein (AAC76060.1); Blastp hit to AAC76060.1 (130 aa), 89% identity in aa 1 - 130" /codon_start=1 /transl_table=11 /product="TIGR00156 family protein" /protein_id="NP_462091.1" /db_xref="GI:16766476" /db_xref="GeneID:1254699" /translation="MKKLAAIVAVMALCSTPVLAAQQGGFSGPSATQTQGGGFVGPNG SSTTVESAKSLRDDAWVTLRGNIVERISDDLYVFKDATGTINVDIDHKRWNGLTVTPQ DTVEIQGEVDKDWNSVEIDVKQIRKVNP" regulatory complement(3340663..3340668) /regulatory_class="ribosome_binding_site" /gene="ygiW" /locus_tag="STM3176" /note="putative RBS for ygiW; RegulonDB:STMS1H003210" gene 3340793..3341464 /gene="ygiX" /locus_tag="STM3177" /db_xref="GeneID:1254700" regulatory 3340793..3340798 /regulatory_class="ribosome_binding_site" /gene="ygiX" /locus_tag="STM3177" /note="putative RBS for ygiX; RegulonDB:STMS1H003211" CDS 3340805..3341464 /gene="ygiX" /locus_tag="STM3177" /note="OmpR family; similar to E. coli putative 2-component transcriptional regulator (AAC76061.1); Blastp hit to AAC76061.1 (219 aa), 87% identity in aa 1 - 218" /codon_start=1 /transl_table=11 /product="two-component system response regulator QseB" /protein_id="NP_462092.1" /db_xref="GI:16766477" /db_xref="GeneID:1254700" /translation="MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAP YDAVILDLTLPGMDGRDILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKP FALIEVAARLEALVRRASGQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLEL LLRNKGRVLPRKLIEEKLYNWDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGYTLGD A" gene 3341450..3342810 /gene="ygiY" /locus_tag="STM3178" /db_xref="GeneID:1254701" regulatory 3341450..3341455 /regulatory_class="ribosome_binding_site" /gene="ygiX" /locus_tag="STM3177" /note="putative RBS for ygiY; RegulonDB:STMS1H003212" CDS 3341461..3342810 /gene="ygiY" /locus_tag="STM3178" /EC_number="2.7.3.-" /note="similar to E. coli putative 2-component sensor protein (AAC76062.1); Blastp hit to AAC76062.1 (449 aa), 79% identity in aa 1 - 449" /codon_start=1 /transl_table=11 /product="two-component system sensor histidine kinase QseC" /protein_id="NP_462093.1" /db_xref="GI:16766478" /db_xref="GeneID:1254701" /translation="MKLTQRLSLRVRLTLIFLILVSITWAISSFVAWRKTTDNVDELF DTQLMLFARRLSTLDLNEINAPQRMAHTPKKLKHGHIDDDALAFAIFSADGKMLLHDG DNGQDIPYRYRREGFDNGYLKDDNDLWRFLWLNSADGKYRIVVGQEWDYREDMALAIV AAQLTPWLIALPFMLLILLLLLHRELRPLKKLAQALRFRSPESETPLDAKGVPSEVRP LVEALNQLFSRIHSMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSGDDPLSRDKAL TQLHAGIDRATRLVDQLLTLSRLDSLNNLQDVAEISLEELLQSAVMDIYHPAQQANID VRLQLNAHDVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLHARSFTVRDNGPGV APEILTHIGERFYRPPGQSVTGSGLGLSIVRRIATLHGMTVSFGNAAEGGFEAVVSW" gene 3342906..3343498 /gene="mdaB" /locus_tag="STM3179" /db_xref="GeneID:1254702" regulatory 3342906..3342911 /regulatory_class="ribosome_binding_site" /gene="mdaB" /locus_tag="STM3179" /note="putative RBS for mdaB; RegulonDB:STMS1H003213" CDS 3342917..3343498 /gene="mdaB" /locus_tag="STM3179" /note="drug modulator; similar to E. coli modulator of drug activity B (AAC76064.1); Blastp hit to AAC76064.1 (193 aa), 92% identity in aa 1 - 192" /codon_start=1 /transl_table=11 /product="NADPH quinone reductase MdaB" /protein_id="NP_462094.1" /db_xref="GI:16766479" /db_xref="GeneID:1254702" /translation="MSNILIINGAKKFAHSNGQLNDTLTEVADGLLRDLGHQVKIVRA DSDYDIKEEVQNFVWADVVIWQMPGWWMGAPWTVKKYMDDVFTEGHGTLYASDGRTRS DAAKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGM DALPTFIANDVIKMPDVPRYTAEYRKHLSEIFA" gene 3343518..3343844 /gene="ygiN" /locus_tag="STM3180" /db_xref="GeneID:1254703" regulatory 3343518..3343523 /regulatory_class="ribosome_binding_site" /gene="ygiN" /locus_tag="STM3180" /note="putative RBS for ygiN; RegulonDB:STMS1H003214" CDS 3343530..3343844 /gene="ygiN" /locus_tag="STM3180" /note="similar to E. coli orf, hypothetical protein (AAC76065.1); Blastp hit to AAC76065.1 (104 aa), 90% identity in aa 1 - 104" /codon_start=1 /transl_table=11 /product="monooxygenase" /protein_id="NP_462095.1" /db_xref="GI:16766480" /db_xref="GeneID:1254703" /translation="MLTVIAEIRTRPGQHHRQAVLDQFAKIIPTVLKEEGCHGYAPMV DHAAGVSFQTLAPDSIVMIEQWESVAHLEAHLQTPHMKAYSDAVKDDVLEMNIRILES GV" gene complement(3343969..3345861) /gene="parE" /locus_tag="STM3181" /db_xref="GeneID:1254704" CDS complement(3343969..3345861) /gene="parE" /locus_tag="STM3181" /EC_number="5.99.1.-" /note="topoisomerase IV subunit B. (SW:PARE_SALTY)" /codon_start=1 /transl_table=11 /product="DNA topoisomerase IV subunit B" /protein_id="NP_462096.1" /db_xref="GI:16766481" /db_xref="GeneID:1254704" /translation="MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSV DEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN KNYQFSGGLHGVGISVVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRN TGTSVHFWPDESFFDSPRFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSEQRWCYQDG LNDYLGEAVNGLPTLPEKPFIGNFNGETEAVDWALLWLPEGGELLTESYVNLIPTMQG GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK ERLSSRQCAAFVSGVVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLRAAKKVVRKKLT SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV SSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVR HFRALVKNGHVYVALPPLYRIDLGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGL GEMNPMQLRETTLDPNTRRLVQLTISDEDDQRTNAMMDMLLAKKRSEDRRNWLQEKGD LADLDV" gene complement(3345889..3346480) /gene="yqiA" /locus_tag="STM3182" /db_xref="GeneID:1254705" CDS complement(3345889..3346470) /gene="yqiA" /locus_tag="STM3182" /note="similar to E. coli orf, hypothetical protein (AAC76067.1); Blastp hit to AAC76067.1 (193 aa), 93% identity in aa 1 - 191" /codon_start=1 /transl_table=11 /product="esterase YqiA" /protein_id="NP_462097.1" /db_xref="GI:16766482" /db_xref="GeneID:1254705" /translation="MSTLLYLHGFNSSPRSAKACQLKNWLAERHPHVEMIVPQLPPYP ADAAELLESLVLEHGGAPLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDY LGQNENPYTGQQYVLESRHIYDLKVMQIDPLEAPDLIWLLQQTGDEVLYYRQAVAYYA SCRQTVTEGGNHAFTGFEDYFNQIVDFLGLHSC" gene complement(3346470..3347308) /gene="icc" /locus_tag="STM3183" /db_xref="GeneID:1254706" CDS complement(3346470..3347297) /gene="icc" /locus_tag="STM3183" /note="similar to E. coli regulator of lacZ (AAC76068.1); Blastp hit to AAC76068.1 (275 aa), 92% identity in aa 1 - 275" /codon_start=1 /transl_table=11 /product="3',5'-cyclic-AMP phosphodiesterase" /protein_id="NP_462098.1" /db_xref="GI:16766483" /db_xref="GeneID:1254706" /translation="MESLLTLPLAGEARVRILQITDTHLFAEKHETLLGVNTWESYQA VLEAIRAQQYEYDLIVATGDLAQDQSAAAYQHFAEGIASFRAPCVWLPGNHDFQPAMY SALQEAGISPAKRVLIGEQWQILLLDSQVFGVPHGELSEFQLEWLERKLADAPERQTL LLLHHHPLPAGCSWLDQHSLRNAGELDSVLANFPRVKYLLCGHIHQELDLDWNGRRLL ASPSTCVQFKPHCANFTLDTIAPGWRTLELRANGVLETEVHRLQDTRFRPDTASEGY" regulatory complement(3346475..3346480) /regulatory_class="ribosome_binding_site" /gene="yqiA" /locus_tag="STM3182" /note="putative RBS for yqiA; RegulonDB:STMS1H003215" regulatory complement(3347303..3347308) /regulatory_class="ribosome_binding_site" /gene="icc" /locus_tag="STM3183" /note="putative RBS for icc; RegulonDB:STMS1H003216" gene complement(3347322..3347753) /gene="yqiB" /locus_tag="STM3184" /db_xref="GeneID:1254707" CDS complement(3347322..3347744) /gene="yqiB" /locus_tag="STM3184" /note="similar to E. coli putative enzyme (AAC76069.1); Blastp hit to AAC76069.1 (140 aa), 95% identity in aa 1 - 140" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462099.1" /db_xref="GI:16766484" /db_xref="GeneID:1254707" /translation="MKRYTPDFPEMMRLCETNFSQLRRLLPRNDAPGETVSYQVGNVQ YRLTIVESTRYTTLVTIEQTTPAITYWSLPSLTVRLYHDAMVAEVCSSQQIFRFKARY DYPNKKLHQRDEKHQINQFLADWLRFCLAHGAMAIPVY" gene complement(3347741..3348385) /gene="yqiE" /locus_tag="STM3185" /db_xref="GeneID:1254708" CDS complement(3347741..3348373) /gene="yqiE" /locus_tag="STM3185" /EC_number="3.6.1.13" /note="similar to E. coli orf, hypothetical protein (AAC76070.1); Blastp hit to AAC76070.1 (209 aa), 87% identity in aa 1 - 208" /codon_start=1 /transl_table=11 /product="ADP-ribose diphosphatase" /protein_id="NP_462100.1" /db_xref="GI:16766485" /db_xref="GeneID:1254708" /translation="MRKSDNLPVTFTKSDVEIIARETRYRGFFSLDVYRFRHRLFNGE MSGEVKREIFERGHAAVLLPFDPERDEVVLVEQIRIAAYDTSVTPWLLEMVAGMIEEG ETIEAVARREAMEEAGLTVGRTRPVISYLASPGGTSERSSILVGEVDATTAVGIHGLA DENEDIRVHVVSREQAYQWVEEGKIDNAAAVIALQWLQLHHQELKNEWKK" regulatory complement(3347748..3347753) /regulatory_class="ribosome_binding_site" /gene="yqiB" /locus_tag="STM3184" /note="putative RBS for yqiB; RegulonDB:STMS1H003217" regulatory complement(3348380..3348385) /regulatory_class="ribosome_binding_site" /gene="yqiE" /locus_tag="STM3185" /note="putative RBS for yqiE; RegulonDB:STMS1H003218" gene 3348574..3350049 /gene="tolC" /locus_tag="STM3186" /db_xref="GeneID:1254709" CDS 3348574..3350049 /gene="tolC" /locus_tag="STM3186" /note="specific tolerance to colicin E1; segregation of daughter chromosomes; role in organic solvent tolerance; similar to E. coli outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (AAC76071.1); Blastp hit to AAC76071.1 (495 aa), 89% identity in aa 1 - 495" /codon_start=1 /transl_table=11 /product="outer membrane channel" /protein_id="NP_462101.3" /db_xref="GI:1109557740" /db_xref="GeneID:1254709" /translation="MQMKKLLPILIGLSLSGFSTLSQAENLMQVYQQARLSNPELRKS AADRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGINSNETSASLQLTQTLFDM SKWRGLTLQEKAAGIQDVTYQTDQQTLILNTANAYFKVLNAIDVLSYTQAQKEAIYRQ LDQTTQRFNVGLVAITDVQNARAQYDTVLANEVTARNNLDNAVEELRQVTGNYYPELA SLNVEHFKTDKPKAVNALLKEAENRNLSLLQARLSQDLAREQIRQAQDGHLPTLNLTA STGISDTSYSGSKTNSTQYDDSNMGQNKIGLNFSLPLYQGGMVNSQVKQAQYNFVGAS EQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIVD VLDATTTLYDAKQQLANARYTYLINQLNIKYALGTLNEQDLLALNSTLGKPIPTSPES VAPETPDQDAAADGYNAHSAAPAVQPTAARANSNNGNPFRH" gene 3350249..3350933 /gene="ygiB" /locus_tag="STM3187" /db_xref="GeneID:1254710" regulatory 3350249..3350254 /regulatory_class="ribosome_binding_site" /gene="ygiB" /locus_tag="STM3187" /note="putative RBS for ygiB; RegulonDB:STMS1H003219" CDS 3350262..3350933 /gene="ygiB" /locus_tag="STM3187" /note="similar to E. coli orf, hypothetical protein (AAC76073.1); Blastp hit to AAC76073.1 (234 aa), 96% identity in aa 12 - 234" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462102.1" /db_xref="GI:16766487" /db_xref="GeneID:1254710" /translation="MKRTKSIHHASFRKSWSARHLTPVALAVTAVFMLAGCEKSDETV SLYQNADDCSAANPGKSAECTTAYNNALKEAERTAPKYATREDCVAEFGEGQCQQAPA QAGMAPENQAQAQQSSGSFWMPLMAGYMMGRLMGGGAGFAQQPLFSSKNPASPAYGKY TDAAGKNYGAAQPGRTMTVPKTAMAPKPATTTTVTRGGFGESVAKQSTMQRSAAGTST RSMGG" gene 3350926..3352102 /gene="ygiC" /locus_tag="STM3188" /db_xref="GeneID:1254711" regulatory 3350926..3350931 /regulatory_class="ribosome_binding_site" /gene="ygiB" /locus_tag="STM3187" /note="putative RBS for ygiC; RegulonDB:STMS1H003220" CDS 3350939..3352102 /gene="ygiC" /locus_tag="STM3188" /note="similar to E. coli putative synthetase/amidase (AAC76074.1); Blastp hit to AAC76074.1 (386 aa), 94% identity in aa 1 - 386" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462103.1" /db_xref="GI:16766488" /db_xref="GeneID:1254711" /translation="MERVSITERPDWRDKATEYGFNFHTMYGEPYWCEDAYYKLTLAQ VEKLEDVTAELHQMCLKVVERVIASDELMTKFRIPKHTWGFVRQSWQTQQPSLYSRLD LAWDGIGEPKLLENNADTPTSLYEAAFFQWIWLEDQINAGNLPEGSDQFNSLQEKLIE RFAELREQYGFQLLHLTCCRDTVEDRGTIQYLQDCAAEAEIATEFLYIDDIGLGEKGQ FTDLQDQVIANLFKLYPWEFMLREMFSTKLEDAGVRWLEPAWKSIISNKALLPLLWEM FPDHPNLLPAYFAEDEHPPMDKYVVKPIFSREGANVSIIENGKTIESVEGPYGEEGMI VQQFYPLPKFGDSYTLIGSWLINDQPAGIGIREDRALITQDLSRFYPHIFVEG" gene complement(3352164..3353007) /gene="ygiD" /locus_tag="STM3189" /db_xref="GeneID:1254712" CDS complement(3352164..3352994) /gene="ygiD" /locus_tag="STM3189" /note="similar to E. coli orf, hypothetical protein (AAC76075.1); Blastp hit to AAC76075.1 (271 aa), 86% identity in aa 6 - 271" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462104.1" /db_xref="GI:16766489" /db_xref="GeneID:1254712" /translation="MVMLTKCLSSKDNIMSLTCMPALFLGHGSPMNVLDDNDYTRAWR RLGEALPRPQAIVVVSAHWYTRGTGVTAMERPQTLHDFGGFPQALYDTHYPAPGSPAL AQRLVELLAPVPVALDKEAWGFDHGSWGVLIKMYPNADIPMVQLSVDSTKPAAWHFEV GRKLATLRDEGVMLVASGNVVHNLRTVRWHGDNIPYPWAASFNDFVKANLTWQGPVEQ HPLVNYLQHEGGALSNPTPEHFLPLLYVLGAWDGKEPITIPVDGIEMGSISMLSVQVG " regulatory complement(3353002..3353007) /regulatory_class="ribosome_binding_site" /gene="ygiD" /locus_tag="STM3189" /note="putative RBS for ygiD; RegulonDB:STMS1H003221" gene 3353081..3353866 /gene="ygiE" /locus_tag="STM3190" /db_xref="GeneID:1254713" regulatory 3353081..3353086 /regulatory_class="ribosome_binding_site" /gene="ygiE" /locus_tag="STM3190" /note="putative RBS for ygiE; RegulonDB:STMS1H003222" CDS 3353093..3353866 /gene="ygiE" /locus_tag="STM3190" /note="similar to E. coli orf, hypothetical protein (AAC76076.1); Blastp hit to AAC76076.1 (257 aa), 92% identity in aa 1 - 257" /codon_start=1 /transl_table=11 /product="zinc transporter ZupT" /protein_id="NP_462105.1" /db_xref="GI:16766490" /db_xref="GeneID:1254713" /translation="MSVPLILTLLAGAATFIGAFLGVLGQKPSNRVLAFSLGFAAGIM LLISLMEMLPAALDTEGMSPVLGYGMFIIGLLGYFGLDRLLPHAHPQDLVQKRQQPLP GSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPV YAATGSKRTAIFWAGISGMAEILGGVLAWLILGSLVSPIVMAAIMAAVAGIMVALSVD ELMPLAKEIDPNNNPSYGVLCGMSIMGLSLVILQTIGIG" gene 3354502..3355474 /locus_tag="STM3191" /db_xref="GeneID:1254714" regulatory 3354502..3354507 /regulatory_class="ribosome_binding_site" /locus_tag="STM3191" /note="putative RBS for STM3191; RegulonDB:STMS1H003223" CDS 3354509..3355474 /locus_tag="STM3191" /codon_start=1 /transl_table=11 /product="putative arylsulfate sulfotransferase" /protein_id="NP_452516.1" /db_xref="GI:1109557741" /db_xref="GeneID:1254714" /translation="MFDQYRKTILAGAVALTCGLTAASTFAAGFQPAQPAGKLGAVVV DPYGNAPLTALVELDSHIISDVKVTVHGKGEKGVPVTYTVGKESLETYDGIPIFGLYQ KFANNVTVEYKENGKAMKDDYVVQTSAIVNHYMDNRSISDLQQTKVIKVAPGFEDRLY LVNTHTFTPQGAEFHWHGEKDKNAGILDAGPAGGALPFDIAPYTFVVDTQGEYRWWLD QDTFYDGHDMNINKRGYLMGIRETPRGTFTAVQGQHWYEFDMMGQILADHKLPRGFLD ASHESIETVNGTVLLRVGKRVTAKKTAYMFILFVTKSLRSISLAA" gene 3355510..3356304 /locus_tag="STM3192" /db_xref="GeneID:1254715" CDS 3355510..3356304 /locus_tag="STM3192" /codon_start=1 /transl_table=11 /product="putative arylsulfate sulfotransferase" /protein_id="NP_452517.1" /db_xref="GI:1109557742" /db_xref="GeneID:1254715" /translation="MRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPYGDALGVGAG RNWAHVNSIAYDAKDDSIILSSRHQGIVKIGRDKQVKWILAPSKGWNKQLASKLLKPV DDHGKPLTCDENGKCKDTDFDFTYTQHTAWLSSKGTLTVFDNGDGRGLEQPALPTMKY SRFVEYKIDEKKGTVQQVWEYGKERGYDFYSPITSVVEYQKDRDTMFGFGGSINLFDV GKPTVGKLNEIDYKTKEVKVEIDVLSDKPNQTHYRALLVHPTQMFK" gene 3356317..3356995 /locus_tag="STM3193" /db_xref="GeneID:1254716" regulatory 3356317..3356322 /regulatory_class="ribosome_binding_site" /locus_tag="STM3193" /note="putative RBS for STM3193; RegulonDB:STMS1H003224" CDS 3356324..3356995 /locus_tag="STM3193" /codon_start=1 /transl_table=11 /product="thiol:disulfide interchange protein" /protein_id="NP_462108.1" /db_xref="GI:16766493" /db_xref="GeneID:1254716" /translation="MSSKWITSLFKSVVLTAALVTPFAASAFTEGTDYMVLEKPIPNA DKTLIKVFSYACPFCYKYDKAVTGPVSDKVADLVTFTPFHLETKGEYGKQASEVFAVL IAKDKAAGISLFDAKSQFKKAKFAWYAAYHDKKERWSDGKDPAAFIKTGLDAAGMSQA DFEAALKDPAVQETLEKWKAAYDVAKIQGVPAYVVNGKYLIYTKNIKSIDSMAELVRE LATKK" gene 3357004..3357687 /locus_tag="STM3194" /db_xref="GeneID:1254717" regulatory 3357004..3357009 /regulatory_class="ribosome_binding_site" /locus_tag="STM3194" /note="putative RBS for STM3194; RegulonDB:STMS1H003225" CDS 3357010..3357687 /locus_tag="STM3194" /codon_start=1 /transl_table=11 /product="disulfide bond formation protein B" /protein_id="NP_462109.1" /db_xref="GI:16766494" /db_xref="GeneID:1254717" /translation="MDFIKGLWRDLRARPVDTLVRWQEQRFLWLLMAIAMGGLIILAH SFFQIYLYMAPCEQCVYIRYAMFVMVIGGVIAAINPKNIVLKLIGCIAAFYGSIMGIK FSIKLNGIHHAVHNADPDSLFGVQGCSTDPTFPFNLPLAEWAPEWFKPTGDCGYDAPI VPDGVTLSSVQQWFVDLYQQSEGWYLLPPWHFMNMAQACMLAFGLCLILLLVMSGAWA LKLARGK" gene complement(3357858..3358525) /gene="ribB" /locus_tag="STM3195" /db_xref="GeneID:1254718" CDS complement(3357858..3358511) /gene="ribB" /locus_tag="STM3195" /note="similar to E. coli 3,4 dihydroxy-2-butanone-4-phosphate synthase (AAC76077.1); Blastp hit to AAC76077.1 (217 aa), 96% identity in aa 1 - 217" /codon_start=1 /transl_table=11 /product="3,4-dihydroxy-2-butanone-4-phosphate synthase" /protein_id="NP_462110.1" /db_xref="GI:16766495" /db_xref="GeneID:1254718" /translation="MNQTLLSSFGTPFERVELALDALREGRGVMVLDDEDRENEGDMI FPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTGFTVTIEAA EGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDL MTLAGFKPAGVLCELTNDDGTMARAPECIAFAGQHNMAVVTIEDLVAYRQAHERKAS" regulatory complement(3358520..3358525) /regulatory_class="ribosome_binding_site" /gene="ribB" /locus_tag="STM3195" /note="putative RBS for ribB; RegulonDB:STMS1H003226" gene 3358881..3359247 /gene="yqiC" /locus_tag="STM3196" /db_xref="GeneID:1254719" regulatory 3358881..3358886 /regulatory_class="ribosome_binding_site" /gene="yqiC" /locus_tag="STM3196" /note="putative RBS for yqiC; RegulonDB:STMS1H003227" CDS 3358888..3359247 /gene="yqiC" /locus_tag="STM3196" /note="similar to E. coli orf, hypothetical protein (AAC76078.1); Blastp hit to AAC76078.1 (116 aa), 80% identity in aa 1 - 114" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462111.3" /db_xref="GI:1109557743" /db_xref="GeneID:1254719" /translation="MASTYRTTIRANTYQFRETTMIDPKKIEQIARQVHESMPKGIRE FGEDIEKKIRQTLQSQLTRLDLVSREEFDVQTQVLLRTREKLALLEQRLSELEARDKP EEVKPAPAIPPVDPQQE" gene complement(3359321..3359539) /gene="glgS" /locus_tag="STM3197" /db_xref="GeneID:1254720" CDS complement(3359321..3359530) /gene="glgS" /locus_tag="STM3197" /note="similar to E. coli glycogen biosynthesis, rpoS dependent (AAC76085.1); Blastp hit to AAC76085.1 (66 aa), 78% identity in aa 2 - 66" /codon_start=1 /transl_table=11 /product="glycogen synthase" /protein_id="NP_462112.1" /db_xref="GI:16766497" /db_xref="GeneID:1254720" /translation="MLMNNNNVYSLNNFDFLARSFARMQAEGRPVDIQAVTGNMDEEH RDWFCKRYALYCQQATQAKRLELEH" regulatory complement(3359534..3359539) /regulatory_class="ribosome_binding_site" /gene="glgS" /locus_tag="STM3197" /note="putative RBS for glgS; RegulonDB:STMS1H003228" protein_bind complement(3359627..3359647) /note="putative binding site for CRP, RegulonDB: STMS1H000051" /bound_moiety="CRP" gene 3359775..3360408 /locus_tag="STM3198" /db_xref="GeneID:1254721" regulatory 3359775..3359780 /regulatory_class="ribosome_binding_site" /locus_tag="STM3198" /note="putative RBS for STM3198; RegulonDB:STMS1H003229" CDS 3359788..3360408 /locus_tag="STM3198" /note="similar to E. coli putative oxidoreductase (AAC76086.1); Blastp hit to AAC76086.1 (209 aa), 72% identity in aa 1 - 201" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462113.1" /db_xref="GI:16766498" /db_xref="GeneID:1254721" /translation="MTLFAEYNSPYLFAIAFVFFIGVLEMISLIFGHFLSGALDAHLD HYDALSSGPAGQALHYLNIGRVPALVVLCLLAGYFGLFGILIQHGGIMLWQAPLSNLL LVPLSIVLSVFAVHYSGKILAPWLPRDESSALREEEFIGGMAIITGHAAVAGTPCEGK FTDKFGQIHYLLLEPEKGKEFKKGDKVLIVCRLSATRYLAERTFYV" gene 3360413..3362106 /gene="yqiK" /locus_tag="STM3199" /db_xref="GeneID:1254722" regulatory 3360413..3360418 /regulatory_class="ribosome_binding_site" /gene="yqiK" /locus_tag="STM3199" /note="putative RBS for yqiK; RegulonDB:STMS1H003230" CDS 3360427..3362106 /gene="yqiK" /locus_tag="STM3199" /note="similar to E. coli putative membrane protein (AAC76087.1); Blastp hit to AAC76087.1 (553 aa), 92% identity in aa 1 - 553" /codon_start=1 /transl_table=11 /product="flotillin" /protein_id="NP_462114.1" /db_xref="GI:16766499" /db_xref="GeneID:1254722" /translation="MDDVFGILPSWMFTAIVAVIVLLIIGIIFARLYRRASAEQAFVR TGLGGQKVVMSGGAIVMPIFHEIIPINMNTLKLEVSRATVDSLITKDRMRVDVVVAFF VRVKPSVEGIATAAQTLGQRTLSPEDLRMLVEDKFVDALRATAAQMTMHELQDTRENF VQGVQNTVAEDLSKNGLELESVSLTNFNQTSKEHFNPNNAFDAEGLTKLTQETERRRR ERNEVEQDVEVAVREKNRDALERKLEIEQQEAFMTLEQEQQVKTRTAEQNAKIAAFEA ERHREAEQTRILAERQIQETEIEREQAVRSRKVEAEREVRIKEIEQQQVTEIANQTKS IAIAAKSEQQSQAEARANDALADAVRAQQNVETTRQTAEADRAKQVALIAAAQDAETK AVELTVRAKAEKEAAELQAAAIIELAEATRKKGLAEAEAQRALNDAINVLSDEQTSLK FKLALLQSLPAVIEKSVEPMKSIDGIKIIQVDGLNRGATAGDVAAGGANGGNLAEQAL SAALTYRTQAPLIDSLLNEIGIAGGSLKALTTPLVSSATDEINREATIKEQ" gene complement(3362566..3364011) /gene="rfaE" /locus_tag="STM3200" /db_xref="GeneID:1254723" CDS complement(3362566..3363999) /gene="rfaE" /locus_tag="STM3200" /EC_number="2.7.-.-" /note="bifunctional; similar to E. coli putative kinase (AAC76088.1); Blastp hit to AAC76088.1 (477 aa), 93% identity in aa 1 - 476" /codon_start=1 /transl_table=11 /product="bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase" /protein_id="NP_462115.1" /db_xref="GI:16766500" /db_xref="GeneID:1254723" /translation="MKVNLPAFERAGVMVVGDVMLDRYWYGPTCRISPEAPVPVVKVN TVEERPGGAANVAMNIASLGANARLVGLTGIDDAARALSKTLAEVNVKCDFVSVPTHP TITKLRVLSRNQQLIRLDFEEGFEGVDPQPLHERINQALGSIGALVLSDYAKGALTSV QTMISLARQAGVPVLIDPKGTDFERYRGATLLTPNLSEFEAVAGKCKSEDELVERGMK LIADYDLSALLVTRSEQGMTLLQPNKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAA GNTLEEACYFANAAAGVVVGKLGTSTVSPIELENAVRGRADTGFGVMTEEELRQAVAS ARKRGEKVVMTNGVFDILHAGHVSYLANARKLGDRLIVAVNSDASTKRLKGESRPVNP LEQRMIVLGALESVDWVVSFEEDTPQRLIAGILPDLLVKGGDYKPEEIAGSEEVWANG GEVMVLNFEDGCSTTNIIKKIQTESEK" regulatory complement(3364006..3364011) /regulatory_class="ribosome_binding_site" /gene="rfaE" /locus_tag="STM3200" /note="putative RBS for rfaE; RegulonDB:STMS1H003231" gene complement(3364047..3366905) /gene="glnE" /locus_tag="STM3201" /db_xref="GeneID:1254724" CDS complement(3364047..3366890) /gene="glnE" /locus_tag="STM3201" /EC_number="2.7.7.42" /note="regulates P-II (GlnB) and GlnK; similar to E. coli adenylylating enzyme for glutamine synthetase (AAC76089.1); Blastp hit to AAC76089.1 (946 aa), 87% identity in aa 1 - 944" /codon_start=1 /transl_table=11 /product="bifunctional glutamine synthetase adenylyltransferase/deadenyltransferase" /protein_id="NP_462116.1" /db_xref="GI:16766501" /db_xref="GeneID:1254724" /translation="MTPLSSPLSQYWQTVVERLPEGFTETSLSVQAKSVLTFSDFALD SVIAHPEWLAELESASPQADEWRHYAGWLQEALAGVCDDASLMRELRFFRRRIMVRIA WAQTLSLVDDETILQQLSHLAETLIVGARDWLYAACCREWGTPCNPQGVPQPLLILGM GKLGGGELNFSSDIDLIFAWPEHGETRGGRRELDNAQFFTRLGQRLIKALDQPTMDGF VYRVDMRLRPFGDSGPLVLSFAALEDYYQEQGRDWERYAMVKARLMGDNDDAWSRELR AMLRPFVFRRYIDFSVIQSLRNMKGMIAREVRRRGLKDNIKLGAGGIREIEFIVQVFQ LIRGGREPSLQSRSLLPTLDAIAALHLLPENDVAQLRVAYLFLRRLENLLQSINDEQT QTLPADDLNRARLAWGMKAENWPQLVGELTDHMANVRRVFNELIGDDEADTPQEEERS EPWREVWQDALQEDDSTPVLAHLADEERRQVLTLIADFRKELDKRPIGPRGRQVLDQL MPHLLADVCSREDAAVTLSRITPLLAGIVTRTTYLELLSEFPGALKHLIMLCAASPMI ASQLARYPLLLDELLDPGTLYQPTATDAYRDELRQYLLRVPEEDEEQQLEALRQFKQA QLLRIAAADIAGTLPVMKVSDHLTWLAEAMIDAVVQQAWTQMVARYGQPAHLDERQGR GFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDVMTNGEREIDGRQFYLRLAQRIMHLF STRTSSGILYEVDARLRPSGAAGMLVTSADAFADYQQHEAWTWEHQALVRARVVYGDP QLTSQFDAVRRTIMTTARDGKTLQTEVREMREKMRAHLGNKHRDRFDIKADEGGITDI EFIAQYLVLRYAHEKPKLTRWSDNVRILELLAQNGIMDEHEAQALTVAYTTLRDELHH LALQELPGHVAQTCFSKERALVQASWRKWLVAV" regulatory complement(3366900..3366905) /regulatory_class="ribosome_binding_site" /gene="glnE" /locus_tag="STM3201" /note="putative RBS for glnE; RegulonDB:STMS1H003232" gene complement(3367008..3368315) /gene="ygiF" /locus_tag="STM3202" /db_xref="GeneID:1254725" CDS complement(3367008..3368309) /gene="ygiF" /locus_tag="STM3202" /note="similar to E. coli orf, hypothetical protein (AAC76090.1); Blastp hit to AAC76090.1 (433 aa), 85% identity in aa 1 - 433" /codon_start=1 /transl_table=11 /product="CYTH domain-containing protein" /protein_id="NP_462117.1" /db_xref="GI:16766502" /db_xref="GeneID:1254725" /translation="MAQEIELKFIVNHDAVDALRNHLHTLGGEHHAPSQLLNIYFETP DNWLRRHDMGLRIRGENGRYEMTMKIAGRVTGGLHQRPEYNVALSEPVLDLTQLPAEV WPDGNLPAGLASSVQPLFSTDFYREKWCLDVDGSRIEIALDLGDVKAGEFAEPICELE LELLRGDTRAVLKLAKQLLSQTGLRQGSLSKAARGYHLAQGNAPRENTPTTILRTAAK ATVEQGLEASLDLALSQWQYHEELWLRGDKSAKEHVLDAMGLVRHALMLFGGIVPRKA SAHLRDLLTQAEATMTSAVSAVTAVYSTQTAMAKLALTEWLVTKAWQPFLDAKAQAKM ADSFKRFADIHLSRHAAELKKVFGQPLGDKYRDQLPRLTRDIDSVLLLAGYYDAMVAQ AWLENWQGLRHAIITGQRIEIEHFRNEAINQQPFWLHSGKR" regulatory complement(3368310..3368315) /regulatory_class="ribosome_binding_site" /gene="ygiF" /locus_tag="STM3202" /note="putative RBS for ygiF; RegulonDB:STMS1H003233" gene 3368551..3369165 /gene="ygiM" /locus_tag="STM3203" /db_xref="GeneID:1254726" CDS 3368551..3369165 /gene="ygiM" /locus_tag="STM3203" /note="similar to E. coli orf, hypothetical protein (AAC76091.1); Blastp hit to AAC76091.1 (206 aa), 91% identity in aa 1 - 206" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462118.1" /db_xref="GI:16766503" /db_xref="GeneID:1254726" /translation="MPKLRLIGLTLLALSATAVSHAEETRYVSDELNTWVRSGPGDNY RLVGTVNAGEEVTLLQSDANYGQIKDSSGRTAWIPLKELNTTPSLRTRVPDLENQVKT LTDKLNNIDTTWNQRTADMQQKVAQSDSVINGLKEENQKLKNELIVAQKKVSAANLQL DDKQRTIIMQWFMYGGGVLGIGLLLGLVLPHMIPSRKRKDRWMN" gene 3369216..3370469 /gene="cca" /locus_tag="STM3204" /db_xref="GeneID:1254727" regulatory 3369216..3369221 /regulatory_class="ribosome_binding_site" /gene="cca" /locus_tag="STM3204" /note="putative RBS for cca; RegulonDB:STMS1H003234" CDS 3369228..3370469 /gene="cca" /locus_tag="STM3204" /EC_number="2.7.7.72" /note="similar to E. coli tRNA nucleotidyl transferase (AAC76092.1); Blastp hit to AAC76092.1 (412 aa), 90% identity in aa 1 - 411" /codon_start=1 /transl_table=11 /product="multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase" /protein_id="NP_462119.1" /db_xref="GI:16766504" /db_xref="GeneID:1254727" /translation="MKIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGR DFPVFLHPQTHEEYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDD AGQIIDPYHGRRDLEARLLRHVSPAFGEDPLRVLRVARFAARYAHLSFRIADETLALM REMTAAGELEHLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALFGVPA PAKWHPEIDTGVHTLMTLSMAAMLSPQLDVRFATLCHDLGKGLTPKNLWPRHHGHGPA GVKLVEQLCQRLRVPNDLRDLAKLVAEYHDLIHTFPILQPKTIVKLFDAIDAWRKPQR VEQIALTSEADVRGRTGFEASDYPQGRWLREAWQVAQAVPTKEVVEAGFKGIEIREEL TKRRIAAVANWKEKRCPNPAS" gene complement(3370574..3371408) /gene="bacA" /locus_tag="STM3205" /db_xref="GeneID:1254728" CDS complement(3370574..3371398) /gene="bacA" /locus_tag="STM3205" /EC_number="2.7.1.66" /note="possibly phosphorylates undecaprenol; similar to E. coli bacitracin resistance; possibly phosphorylates undecaprenol (AAC76093.1); Blastp hit to AAC76093.1 (273 aa), 97% identity in aa 1 - 273" /codon_start=1 /transl_table=11 /product="bacitracin resistance" /protein_id="NP_462120.3" /db_xref="GI:1109557744" /db_xref="GeneID:1254728" /translation="MMSDMHSLLIAAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGD TAKTFEVVIQLGSILAVVVMFWRRLFGLIGIHFGRPLQREGESKGRLTLIHILLGMIP AVVLGLVFHDTIKSLFNPINVMYALVVGGLLLIAAECLKPKEPRAPGLDDMTYRQAFM IGCFQCLALWPGFSRSGATISGGMLMGVSRYAASEFSFLLAVPMMMGATVLDLYKSWS FLTAADIPMFAVGFVTAFVVALIAIKTFLQLIKRISFIPFAIYRFVVAAAVYVVFF" regulatory complement(3371403..3371408) /regulatory_class="ribosome_binding_site" /gene="bacA" /locus_tag="STM3205" /note="putative RBS for bacA; RegulonDB:STMS1H003235" gene complement(3371493..3371861) /gene="folB" /locus_tag="STM3206" /db_xref="GeneID:1254729" CDS complement(3371493..3371855) /gene="folB" /locus_tag="STM3206" /EC_number="4.1.2.25" /note="contains dihydroneopterin triphosphate 2'-epimerase activity; similar to E. coli putative kinase (AAC76094.1); Blastp hit to AAC76094.1 (123 aa), 93% identity in aa 1 - 120" /codon_start=1 /transl_table=11 /product="dihydroneopterin aldolase" /protein_id="NP_462121.3" /db_xref="GI:1109557745" /db_xref="GeneID:1254729" /translation="MMDIVFIEQLSVITTIGVYDWEQTIEQKLVFDIEMAWDNRKSAK SDDVADCLSYADIADTVINHVEGGRFALVERVAEEVADLLLSRFNSPWVRIKLSKPGA VARAANVGVIIERGNNLK" regulatory complement(3371856..3371861) /regulatory_class="ribosome_binding_site" /gene="folB" /locus_tag="STM3206" /note="putative RBS for folB; RegulonDB:STMS1H003236" gene 3371947..3372570 /gene="ygiH" /locus_tag="STM3207" /db_xref="GeneID:1254730" regulatory 3371947..3371952 /regulatory_class="ribosome_binding_site" /gene="ygiH" /locus_tag="STM3207" /note="putative RBS for ygiH; RegulonDB:STMS1H003237" CDS 3371959..3372570 /gene="ygiH" /locus_tag="STM3207" /note="similar to E. coli orf, hypothetical protein (AAC76095.1); Blastp hit to AAC76095.1 (205 aa), 95% identity in aa 1 - 203" /codon_start=1 /transl_table=11 /product="acyl-phosphate--glycerol-3-phosphate O-acyltransferase" /protein_id="NP_462122.1" /db_xref="GI:16766507" /db_xref="GeneID:1254730" /translation="MSAIAPGMILFAYLCGSISSAILVCRIAGLPDPRESGSGNPGAT NVLRIGGKGAAVAVLIFDILKGMLPVWGAYALGVTPFWLGLIAIAACLGHIWPVFFGF KGGKGVATAFGAIAPIGWDLTGVMAGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKP QFTFPVSMLSCLILLRHHDNIQRLWRRQETKIWTKLKKKRQKD" gene complement(3372821..3373849) /gene="gcp" /locus_tag="STM3208" /db_xref="GeneID:1254731" CDS complement(3372821..3373834) /gene="gcp" /locus_tag="STM3208" /EC_number="3.4.24.57" /note="probable O-sialoglycoprotein endopeptidase. (SW:GCP_SALTY)" /codon_start=1 /transl_table=11 /product="tRNA threonylcarbamoyl adenosine modification protein TsaD" /protein_id="NP_462123.1" /db_xref="GI:16766508" /db_xref="GeneID:1254731" /translation="MRVLGIETSCDETGIAIYDDKKGLLANQLYSQVKLHADYGGVVP ELASRDHVRKTVPLIQAALKEAGLTASDIDAVAYTAGPGLVGALLVGATVGRSLAFAW NVPAIPVHHMEGHLLAPMLEDNPPEFPFVALLVSGGHTQLISVTGIGQYELLGESIDD AAGEAFDKTAKLLGLDYPGGPMLSKMASQGTAGRFVFPRPMTDRPGLDFSFSGLKTFA ANTIRSNGGDEQTRADIARAFEDAVVDTLMIKCKRALESTGFKRLVMAGGVSANRTLR AKLAEMMQKRRGEVFYARPEFCTDNGAMIAYAGMVRFKAGVTADLGVTVRPRWPLAEL PAA" regulatory complement(3373844..3373849) /regulatory_class="ribosome_binding_site" /gene="gcp" /locus_tag="STM3208" /note="putative RBS for gcp; RegulonDB:STMS1H003238" gene 3373960..3374277 /gene="rpsU" /locus_tag="STM3209" /db_xref="GeneID:1254732" regulatory 3373960..3373968 /regulatory_class="minus_35_signal" /gene="rpsU" /locus_tag="STM3209" /note="putative -35_signal for rpsU; RegulonDB:STMLTH004581" regulatory 3373984..3373992 /regulatory_class="minus_10_signal" /gene="rpsU" /locus_tag="STM3209" /note="putative -10_signal for rpsU; RegulonDB:STMLTH004581" protein_bind 3374013..3374029 /gene="rpsU" /locus_tag="STM3209" /note="putative binding site for LexA, RegulonDB: STMS1H000242" /bound_moiety="LexA" regulatory 3374048..3374053 /regulatory_class="ribosome_binding_site" /gene="rpsU" /locus_tag="STM3209" /note="putative RBS for rpsU; RegulonDB:STMS1H003239" CDS 3374062..3374277 /gene="rpsU" /locus_tag="STM3209" /note="30S ribosomal protein S21. (SW:RS21_ECOLI)" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S21" /protein_id="NP_462124.1" /db_xref="GI:16766509" /db_xref="GeneID:1254732" /translation="MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTE RKRAKASAVKRHAKKLARENARRTRLY" gene 3374504..3376258 /gene="dnaG" /locus_tag="STM3210" /db_xref="GeneID:1254733" regulatory 3374504..3374509 /regulatory_class="ribosome_binding_site" /gene="dnaG" /locus_tag="STM3210" /note="putative RBS for dnaG; RegulonDB:STMS1H003240" CDS 3374513..3376258 /gene="dnaG" /locus_tag="STM3210" /EC_number="2.7.7.-" /note="DNA biosynthesis; DNA primase. (SW:PRIM_SALTY)" /codon_start=1 /transl_table=11 /product="DNA primase" /protein_id="NP_462125.1" /db_xref="GI:16766510" /db_xref="GeneID:1254733" /translation="MAGRIPRVFINDLLARTDIVDLIDVRVKLKKQGKNYHACCPFHN EKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAG TGLSQIERHQRQNLYQLMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGF APPGWDNALKRFGNNSDNKALLLDAGMLVNNEQGSTYDRFRNRVMFPIRDKRGRVIGF GGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQY DINYAVASLGTSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQ VRFMFLPDGEDPDTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLA ALALPLINQVPGDAHRIQLRQTLGLKLGIFDDSQLDRLVPKQAESGVSRPAPQLKRTT MRILIGLLVQNPDLAPLVPPLDALDQNKLPGLGLFKELVKTCLAQPGLTTGQLLELYR GTNDAATLEKLSMWDDIADKAIAEKTFTDSLNHMFDSLLQLRQEELIARDRTHGLSSE ERRELWTLNQELARK" gene 3376224..3378255 /gene="rpoD" /locus_tag="STM3211" /db_xref="GeneID:1254734" regulatory 3376224..3376232 /regulatory_class="minus_35_signal" /gene="dnaG" /locus_tag="STM3210" /note="putative -35_signal for rpoD; RegulonDB:STMLTH004582" regulatory 3376249..3376257 /regulatory_class="minus_10_signal" /gene="dnaG" /locus_tag="STM3210" /note="putative -10_signal for rpoD; RegulonDB:STMLTH004582" CDS 3376273..3378255 /gene="rpoD" /locus_tag="STM3211" /note="major sigma factor during exponential growth; RNA polymerase sigma factor PROD (SIGMA-70). (SW:RPSD_SALTY)" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma factor RpoD" /protein_id="NP_462126.3" /db_xref="GI:1109557746" /db_xref="GeneID:1254734" /translation="MPHIDREAPDSRSERQRPKYKYALALNVDSYTVDTNQTNKCGYR LMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVME EAPDADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTR EGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAE EEMAPTATHVGSELSQEDLDDDEDEDEEDGDDDAADDDNSIDPELAREKFAELRAQYV VTRDTIKAKGRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI MKLCVEQCKMPKKNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVAEEVQRCLQKLR QIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN KLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHL GDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVG KQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD" gene complement(3378379..3378896) /gene="mug" /locus_tag="STM3212" /db_xref="GeneID:1254735" CDS complement(3378379..3378885) /gene="mug" /locus_tag="STM3212" /EC_number="3.2.2.-" /note="similar to E. coli orf, hypothetical protein (AAC76104.1); Blastp hit to AAC76104.1 (168 aa), 80% identity in aa 1 - 167" /codon_start=1 /transl_table=11 /product="double-stranded uracil-DNA glycosylase" /protein_id="NP_462127.1" /db_xref="GI:16766512" /db_xref="GeneID:1254735" /translation="MVKDILAPGLRVVFCGINPGLSSANTGFPFAHPANRFWKVIHLA GFTDRQLKPEEAEKLLDFRCGVTKLVDRPTVQATEVKLHELRSGGRNLIEKIEDYQPA ALAVLGKQAFEQGFSQRGIAWGKQKIAIGATMVWVLPNPSGLNRIKTEKLVEAYRELD QALIMRGL" regulatory complement(3378891..3378896) /regulatory_class="ribosome_binding_site" /gene="mug" /locus_tag="STM3212" /note="putative RBS for mug; RegulonDB:STMS1H003241" gene 3379011..3379083 /gene="ileX" /locus_tag="STM3213" /db_xref="GeneID:1254736" tRNA 3379011..3379083 /gene="ileX" /locus_tag="STM3213" /product="tRNA-Ile" /db_xref="GeneID:1254736" gene complement(3379166..3379943) /gene="yqjH" /locus_tag="STM3214" /db_xref="GeneID:1254737" CDS complement(3379166..3379933) /gene="yqjH" /locus_tag="STM3214" /note="similar to E. coli orf, hypothetical protein (AAC76105.1); Blastp hit to AAC76105.1 (254 aa), 72% identity in aa 6 - 254" /codon_start=1 /transl_table=11 /product="NADPH-dependent ferric siderophore reductase" /protein_id="NP_462128.1" /db_xref="GI:16766513" /db_xref="GeneID:1254737" /translation="MTTSSVRYPQRVRNELRFRELIVLRVERISAGFQRIVLGGEALD GFISLGFDDHTKVFFPEPGCRFTPPTVTEEGIIWGEGVRPVSRDYTPLYDEARRELAL DFFIHDGGVASRWAMEAREGDTLTIGGPRGSLVVPEEYACQVYVCDESGMPALRRRLE SLSRLPVRPAVTALVSIQDAAYRDYLAHLTDITVEYVVGGDEQAMQTRLSQLTIPESD YFIWITGEGKTVKRLSQCFEKGFDPHLVRAAAYWHRK" regulatory complement(3379938..3379943) /regulatory_class="ribosome_binding_site" /gene="yqjH" /locus_tag="STM3214" /note="putative RBS for yqjH; RegulonDB:STMS1H003242" gene 3380156..3380812 /gene="yqjI" /locus_tag="STM3215" /db_xref="GeneID:1254738" regulatory 3380156..3380161 /regulatory_class="ribosome_binding_site" /gene="yqjI" /locus_tag="STM3215" /note="putative RBS for yqjI; RegulonDB:STMS1H003243" CDS 3380165..3380812 /gene="yqjI" /locus_tag="STM3215" /note="similar to E. coli orf, hypothetical protein (AAC76106.1); Blastp hit to AAC76106.1 (207 aa), 68% identity in aa 1 - 207" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_462129.1" /db_xref="GI:16766514" /db_xref="GeneID:1254738" /translation="MMQNQHEGCCKNRDHMHDGCCKDREHQHEGCHSAHQHENASCGG EHRHGHGCGRHGQGGGRRQRFFGHGELRLVILDILTRDASHGYELIKAIENLTGGGYT PSAGVIYPTLDFLQDQQFITISDEEGGRKKIAITANGAQWLDENREHLTHIQARLKAR CVGMELRKNPQMKRALDNFKAVLDLRINHSDINDAQIKRIIGVIDRAALEIAELD" gene complement(3380809..3382380) /locus_tag="STM3216" /db_xref="GeneID:1254739" CDS complement(3380809..3382374) /locus_tag="STM3216" /note="similar to E. coli methyl-accepting chemotaxis protein I, serine sensor receptor (AAC77311.1); Blastp hit to AAC77311.1 (551 aa), 36% identity in aa 2 - 523" /codon_start=1 /transl_table=11 /product="putative methyl-accepting chemotaxis protein" /protein_id="NP_462130.1" /db_xref="GI:16766515" /db_xref="GeneID:1254739" /translation="MFLHNIKIRSKLFMAFGLFIVLMVVSSALSLFSLDRANTGMQNI ITNDYPTTVKANLLIDNFNDFIIAQQLMLLDEEGRWSQSSQKELDEISQRITALLDEL SSNRHDAASQKIITEIREARQQYLESRFRILQDIQSHNRQAAIQEMMTRTVQVQKVYK DKVQELIAVQDAQMHNAGVQVEGDFKTNRTLLITLALISIAAGCVMGWYIVRSITRPL DEAVRFAEAIADGDLTRHITTDYKDETGVLLQALMAMKTRLLDIVQEVQNGSESISTA AAQIVAGNQDLAARTEEQASSVEETAASMEQITATVKNTADHTSEATKLSAGAASVVK NNGEMMNQVTQKMRVINDTANRMSDIINIIDSIAFQTNILALNAAVEAARAGEHGRGF AVVAGEVRQLAQKSASSASEIRNLIEDSTSQTQEGMHLVEKASALINGMVDNVEEMDV ILREIGQASREQTDGISQINSAIGLIDAATQQNSCLVEESVAAAASLNEQALHLKELV NVFRVREEDTQPA" regulatory complement(3382375..3382380) /regulatory_class="ribosome_binding_site" /locus_tag="STM3216" /note="putative RBS for STM3216; RegulonDB:STMS1H003244" gene complement(3382762..3384294) /gene="aer" /locus_tag="STM3217" /db_xref="GeneID:1254740" CDS complement(3382762..3384282) /gene="aer" /locus_tag="STM3217" /note="senses cellular redox state or proton motive force; similar to E. coli aerotaxis sensor receptor, flavoprotein (AAC76107.1); Blastp hit to AAC76107.1 (506 aa), 83% identity in aa 1 - 506" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462131.1" /db_xref="GI:16766516" /db_xref="GeneID:1254740" /translation="MSSHPYVSQLNTPLDDDTTLMSTTDLESYITHANDTFVQVSGYQ LNELLAQPHNLVRHPDMPKAAFADMWYTLKQGEPWSGIVKNRRKNGDHYWVRANAVPM IREGRVTGYMSIRTRATDDEVAAVEPLYQALNEGRCSKRIHKGLVVRQGLLGKLPAMP VRWRVRSIMGLMAVMLALALFGTDASWQALLLGALAMLAGTALLEWQIVRPIENVATQ ALKVATGERNSVQHLNRSDELGLTLRAVGQLGLMCRWLINDVSSQVSSVRNGSERLAK GNNDLNEHTRQTVENVQETVTTMNQMAESVKLNSETASAADKLSMAASSAATQGGEAM DTVIKTMDDIAHSTQRIGTITTLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGE VRHLASRSANAANDIRKLIDASATKVQSGSEQVHAAGRTMDDIVAQVQNVTLLIARIS QSTQEQTDGLSSLTRAVDELNRITQKNAALVEESAQVSAMVKHRASRLEDAVTVLH" regulatory complement(3384289..3384294) /regulatory_class="ribosome_binding_site" /gene="aer" /locus_tag="STM3217" /note="putative RBS for aer; RegulonDB:STMS1H003245" gene 3384796..3386091 /gene="oat" /locus_tag="STM3218" /db_xref="GeneID:1254741" regulatory 3384796..3384801 /regulatory_class="ribosome_binding_site" /gene="oat" /locus_tag="STM3218" /note="putative RBS for oat; RegulonDB:STMS1H003246" CDS 3384802..3386091 /gene="oat" /locus_tag="STM3218" /EC_number="2.6.1.13" /note="similar to E. coli probable ornithine aminotransferase (AAC76108.1); Blastp hit to AAC76108.1 (496 aa), 94% identity in aa 68 - 495" /codon_start=1 /transl_table=11 /product="putative acetylornithine aminotransferase" /protein_id="NP_462132.3" /db_xref="GI:1109557747" /db_xref="GeneID:1254741" /translation="MKALNREVIDYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGSLN TLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKT LAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSA TAKSTFRRPFMPLLPGFRHVPFGNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVIL PPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGV MPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGD TLLDGFRQLAREYPNLVHDARGKGMLMAIEFVDNETGYRFASEMFRQRVLVAGTLNNA KTIRIEPPLTLTIELCEQVLKSARNALAAMQVSVEEV" gene 3386250..3388280 /gene="fadH" /locus_tag="STM3219" /db_xref="GeneID:1254742" regulatory 3386250..3386255 /regulatory_class="ribosome_binding_site" /gene="fadH" /locus_tag="STM3219" /note="putative RBS for fadH; RegulonDB:STMS1H003247" CDS 3386262..3388280 /gene="fadH" /locus_tag="STM3219" /EC_number="1.3.1.34" /note="similar to E. coli putative NADPH dehydrogenase (AAC76116.1); Blastp hit to AAC76116.1 (672 aa), 85% identity in aa 1 - 672" /codon_start=1 /transl_table=11 /product="NADPH-dependent 2,4-dienoyl-CoA reductase" /protein_id="NP_462133.1" /db_xref="GI:16766518" /db_xref="GeneID:1254742" /translation="MSYPSLFAPLDLGFTTLRNRVLMGSMHTGLEEHPDGAERLAAFY AERARHGVALIVTGGIAPVPSGVVMTGGAMLNDASQLTPHRVVTDAVHAQGGKIALQI LHTGRYSYQPHLVAPSAIQAPINRFMPHELTHDEILQLIDDFAHCAQLAREAGYDGVE VMGSEGYLINEFLTRRTNHRDDEWGGDYASRMRFAVEVVRAVRQRVGNDFIIIYRLSM LDLVENGGTFDETVQLAQAIEAAGASLINTGIGWHEARIPTIATPVPRGAFSWVTRKL KGHVSVPLIATNRINDPQVAETILTRGDADMVSMARPFLADAEFLTKAQSGRADEINT CIGCNQACLDRIFIGKVTSCLVNPRACHETHMPITPAIRKKNLAVVGAGPAGLAFAIN AASRGHHVTLFDAQSEIGGQFTIARQIPGKEEFYETLRYYRRMIDVTGVTLKLNQRVN AEDLQPFDEAILACGIVPRRPPIDGIDHPKALTYLEVLRDKAPVGKRVAIIGCGGIGF DTAMYLSQHGESTSQNIAEFCTEWGIDTSLQQAGGLRPEGPRLARSPRQIVMLQRKTS KPGEGLGKTTGWIHRATLLARGVKMIPAVSYQKIDDDGLHLLIGGEPQLLEVDHVVIC AGQEPRRELADPLRAAGKTVHLIGGCDVAMELDARRAIAQGTRLALEI" gene complement(3388361..3389508) /gene="ygjO" /locus_tag="STM3220" /db_xref="GeneID:1254743" CDS complement(3388361..3389497) /gene="ygjO" /locus_tag="STM3220" /note="similar to E. coli putative enzyme (AAC76119.1); Blastp hit to AAC76119.1 (388 aa), 90% identity in aa 11 - 388" /codon_start=1 /transl_table=11 /product="23S rRNA (guanine(1835)-N(2))-methyltransferase" /protein_id="NP_462134.1" /db_xref="GI:16766519" /db_xref="GeneID:1254743" /translation="MSHVDDGFRSLTLKRFPQTDDVNPLLAWEAADEYLLQQLDETEI RGPVLILNDTFGALSCALAEHSPYSIGDSYLSELGTRENLRHNGIAESSVTFLDSTAD YPQAPGVVLIKVPKTLALLEQQLRALRKVVTAQTRIIAGAKARDIHTSTLELFEKVLG PTTTTLAWKKARLINCTFSHPQLADAPQTLSWKLEDTGWTIHNHANVFSRTGLDIGAR FFMQHLPENLDGEIVDLGCGNGVIGLSLLAKNPQANVVFVDESPMAVDSSRLNVETNL PEAFERCEFMINNALSGVEPFRFNAVFCNPPFHQKHALTDNIAWEMFHHARRCLKING ELYIVANRHLDYFHKLKKIFGNCATIATNNKFVILKAVKQGRRR" regulatory complement(3389503..3389508) /regulatory_class="ribosome_binding_site" /gene="ygjO" /locus_tag="STM3220" /note="putative RBS for ygjO; RegulonDB:STMS1H003248" gene 3389572..3390080 /gene="ygjP" /locus_tag="STM3221" /db_xref="GeneID:1254744" regulatory 3389572..3389577 /regulatory_class="ribosome_binding_site" /gene="ygjP" /locus_tag="STM3221" /note="putative RBS for ygjP; RegulonDB:STMS1H003249" CDS 3389583..3390080 /gene="ygjP" /locus_tag="STM3221" /note="similar to E. coli orf, hypothetical protein (AAC76120.1); Blastp hit to AAC76120.1 (179 aa), 88% identity in aa 13 - 174" /codon_start=1 /transl_table=11 /product="putative metal-dependent hydrolase" /protein_id="NP_462135.1" /db_xref="GI:16766520" /db_xref="GeneID:1254744" /translation="MTSLTYLQGYPEHLLAQVRALIAEQRLGAVLEKRYPGAHDYATD KALYHYTQELKSQFLRNAPPINKVMYDSKIHVLKNALGLHTAVSRVQGGKLKAKAEIR VATVFRNAPEPFLRMIVVHELAHLKEKDHNKAFYQLCCHMEPQYHQLEFDTRLWLTHQ ALSAQ" gene 3390213..3390924 /gene="ygjQ" /locus_tag="STM3222" /db_xref="GeneID:1254745" regulatory 3390213..3390218 /regulatory_class="ribosome_binding_site" /gene="ygjQ" /locus_tag="STM3222" /note="putative RBS for ygjQ; RegulonDB:STMS1H003250" CDS 3390232..3390924 /gene="ygjQ" /locus_tag="STM3222" /note="similar to E. coli orf, hypothetical protein (AAC76121.1); Blastp hit to AAC76121.1 (230 aa), 73% identity in aa 1 - 230" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462136.1" /db_xref="GI:16766521" /db_xref="GeneID:1254745" /translation="MLSQCARFIRRLCFTRRALTVACFLLVAAGVALFYSNWLIVNAS QHLTWNDIQTVPARNVGLVLGAKPGNRYFTRRINTAAALYHAGKVKWLLVSGDNGKKE YDEPSAMQQALMAKGVPEAAIFCDYAGFSTLDSVVRARKVFGESRITIISQAFHNQRA IWLAQQYGIDAIGVNAPDLNKRHGTYTRLREKLARVSAVLDAKILHRQPKYLGAGVTI GADSAHGCPSRQ" gene 3390994..3392011 /gene="ygjR" /locus_tag="STM3223" /db_xref="GeneID:1254746" regulatory 3390994..3390999 /regulatory_class="ribosome_binding_site" /gene="ygjR" /locus_tag="STM3223" /note="putative RBS for ygjR; RegulonDB:STMS1H003251" CDS 3391013..3392011 /gene="ygjR" /locus_tag="STM3223" /note="similar to E. coli orf, hypothetical protein (AAC76122.1); Blastp hit to AAC76122.1 (334 aa), 83% identity in aa 7 - 332" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_462137.1" /db_xref="GI:16766522" /db_xref="GeneID:1254746" /translation="MIRFAVIGTNWITRQFVDAAHETGKFRLAAVYSRSLEQAQSFAN DYPVEHLFTSLEAMAQSDAIEAVYIASPNSLHFSQTQRFLQHKKHVMCEKPLASNLAE VDAAIACARDNQRVLFEAFKTACLPNFLLLRESLPKIGRMHKALLNYCQYSSRYQRYL NGENPNTFNPAFSNGSIMDIGYYCLASAIALWGEPRSVQASANLLESGVDAHGVVVMD YGDFSVTLQHSKVSDSVLASEIQGERGSLVIEKLSECQKVCFAPRGALMQDLTQPQHI NTMLYEAGAFAQLIENHAVEHPGLSLSRATAKWLTEIRRQTGVIFPADDLTHPLTA" gene 3392272..3393252 /gene="ygjT" /locus_tag="STM3224" /db_xref="GeneID:1254747" regulatory 3392272..3392277 /regulatory_class="ribosome_binding_site" /gene="ygjT" /locus_tag="STM3224" /note="putative RBS for ygjT; RegulonDB:STMS1H003252" CDS 3392284..3393252 /gene="ygjT" /locus_tag="STM3224" /note="similar to E. coli putative transport protein (AAC76123.1); Blastp hit to AAC76123.1 (321 aa), 87% identity in aa 1 - 318" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462138.1" /db_xref="GI:16766523" /db_xref="GeneID:1254747" /translation="MNTVGTPLLWGGFAVVVVIMLSIDLLLQGRRGAHAMSMKQAAGW SILWVTLSLLFNAAFWWYLAETQGREVADPQALAFLTGYLIEKSLAVDNVFVWLMLFS YFSVPPALQRRVLVYGVLGAIVLRTIMIFAGTWLITQFEWLLYVFGAFLLFTGVKMAL AKEDESGIGEKPMVRWLRGHLRMTDTIENEHFFVRKNGLLYATPLLLVLIMVEFSDVI FAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLSGVAERFSMLKYGLAVILVFI GIKMLIVDFYHIPIAISLGVVFGILTITLVINAWVNHQRDKKLRAQ" gene 3393495..3394751 /gene="ygjU" /locus_tag="STM3225" /db_xref="GeneID:1254748" regulatory 3393495..3393500 /regulatory_class="ribosome_binding_site" /gene="ygjU" /locus_tag="STM3225" /note="putative RBS for ygjU; RegulonDB:STMS1H003253" CDS 3393507..3394751 /gene="ygjU" /locus_tag="STM3225" /note="similar to E. coli putative transport protein (AAC76124.1); Blastp hit to AAC76124.1 (414 aa), 93% identity in aa 1 - 414" /codon_start=1 /transl_table=11 /product="serine/threonine transporter SstT" /protein_id="NP_462139.1" /db_xref="GI:16766524" /db_xref="GeneID:1254748" /translation="MATQRASGLLQRLAQGSLVKQILVGLVLGILLAWISKPAAEAVG LLGTLFVGALKAVAPVLVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALAAVVF SFAFPSTLHLSSSAQDIVPPSGIVEVLRGLLMSMVSNPIDALLNANYIGILVWAVGLG FALRHGNETTKNLVNDMSNAVTFMVKLVIRFAPVGIFGLVSSTLATTGFSTLWGYAHL LVVLIGCMLLVALVVNPLLVFWKIRRNPYPLVFACLRESGVYAFFTRSSAANIPVNMA LCEKLNLDRDTYSVSIPLGATINMAGAAITITVLTLAAVHTLGVPVDLPTALLLSVVA SLCACGASGVAGGSLLLIPLACNMFGIPNDIAMQVVAVGFIIGVLQDSCETALNSSTD VLFTAAACQAEDERLANNALRS" gene 3395189..3395863 /gene="yqjA" /locus_tag="STM3226" /db_xref="GeneID:1254749" regulatory 3395189..3395194 /regulatory_class="ribosome_binding_site" /gene="yqjA" /locus_tag="STM3226" /note="putative RBS for yqjA; RegulonDB:STMS1H003254" CDS 3395201..3395863 /gene="yqjA" /locus_tag="STM3226" /note="similar to E. coli orf, hypothetical protein (AAC76130.1); Blastp hit to AAC76130.1 (220 aa), 95% identity in aa 1 - 220" /codon_start=1 /transl_table=11 /product="DedA family protein" /protein_id="NP_462140.1" /db_xref="GI:16766525" /db_xref="GeneID:1254749" /translation="MELLTQLLNALWAQDFETLANPSMIGMLYFVLFMILFLENGLLP AAFLPGDSLLILVGVLIAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNW LSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGISGLNNARFQFFNWMS GLLWVLILTSLGYLLGKTPVFMKYEDQLMSCLMLLPVVLLFFGLAGSLVMLWKKKYGS RG" gene 3395854..3396250 /gene="yqjB" /locus_tag="STM3227" /db_xref="GeneID:1254750" regulatory 3395854..3395859 /regulatory_class="ribosome_binding_site" /gene="yqjB" /locus_tag="STM3227" /note="putative RBS for yqjB; RegulonDB:STMS1H003255" CDS 3395867..3396250 /gene="yqjB" /locus_tag="STM3227" /note="similar to E. coli orf, hypothetical protein (AAC76131.1); Blastp hit to AAC76131.1 (127 aa), 68% identity in aa 4 - 127" /codon_start=1 /transl_table=11 /product="EnvZ/OmpR regulon moderator" /protein_id="NP_462141.1" /db_xref="GI:16766526" /db_xref="GeneID:1254750" /translation="MLKPRITARQLIWISAFLLMLTILMMTWSTLRQQESTLAIRAVN QGASMPDGFSVLHHLDANGIHFKSITPKNDMLLITFDSPAQSAAAKTVLDQTLPHGYV VAQQDDDNETVQWLSRLRESSHRFG" gene 3396379..3396763 /gene="yqjC" /locus_tag="STM3228" /db_xref="GeneID:1254751" regulatory 3396379..3396384 /regulatory_class="ribosome_binding_site" /gene="yqjC" /locus_tag="STM3228" /note="putative RBS for yqjC; RegulonDB:STMS1H003256" CDS 3396395..3396763 /gene="yqjC" /locus_tag="STM3228" /note="similar to E. coli orf, hypothetical protein (AAC76132.1); Blastp hit to AAC76132.1 (127 aa), 84% identity in aa 6 - 127" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462142.1" /db_xref="GI:16766527" /db_xref="GeneID:1254751" /translation="MKYRIALAITLFTLSAGSYANSLCQEKEQDIQKEISYAEKHNNQ RRIEGLNKALSEVRANCTDSKLRAEHQKKIAEQKEEVAERQRDLAEAKAKGDADKIDK RERKLAEAQDELKKLEARDY" gene 3396793..3397110 /gene="yqjD" /locus_tag="STM3229" /db_xref="GeneID:1254752" regulatory 3396793..3396798 /regulatory_class="ribosome_binding_site" /gene="yqjD" /locus_tag="STM3229" /note="putative RBS for yqjD; RegulonDB:STMS1H003257" CDS 3396805..3397110 /gene="yqjD" /locus_tag="STM3229" /note="similar to E. coli orf, hypothetical protein (AAC76133.1); Blastp hit to AAC76133.1 (101 aa), 90% identity in aa 1 - 101" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462143.1" /db_xref="GI:16766528" /db_xref="GeneID:1254752" /translation="MSKDNTTEHLRAELKSLTDTLEEVLSSSGEKSKEELSKIRSKAE RALKESRYRLGETGDVIAKQTRVAAARADDYVRENPWTGVGIGAAVGLVLGVLLTRR" gene 3397113..3397511 /gene="yqjE" /locus_tag="STM3230" /db_xref="GeneID:1254753" CDS 3397113..3397511 /gene="yqjE" /locus_tag="STM3230" /note="similar to E. coli orf, hypothetical protein (AAC76134.1); Blastp hit to AAC76134.1 (134 aa), 89% identity in aa 1 - 130" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462144.1" /db_xref="GI:16766529" /db_xref="GeneID:1254753" /translation="MADSRQAQGPGKSVLGIGQRIVTIIVEMVETRLRLAVVELEEEK ANLFQLLLMVGLTMLFAAFGLMSLMVLVIWAIDPQYRLNAMIATTVVLLVLALIGGIW TLRKARQSTLLRHTRHELANDRQILEDDQS" gene 3397491..3397807 /gene="yqjK" /locus_tag="STM3231" /db_xref="GeneID:1254754" regulatory 3397491..3397496 /regulatory_class="ribosome_binding_site" /gene="yqjK" /locus_tag="STM3231" /note="putative RBS for yqjK; RegulonDB:STMS1H003258" CDS 3397508..3397807 /gene="yqjK" /locus_tag="STM3231" /note="similar to E. coli orf, hypothetical protein (AAC76135.1); Blastp hit to AAC76135.1 (99 aa), 87% identity in aa 1 - 99" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462145.1" /db_xref="GI:16766530" /db_xref="GeneID:1254754" /translation="MSSKGEREKRKALLLSQIQQQRLDLSASRRDWLETTGAYDRGWN TVLSLRSWALVGSSVMAIWTIRHPNMLVRWAKRGLGIWSAWRLVKTTLRQQQLRG" gene 3397952..3398437 /gene="yqjF" /locus_tag="STM3232" /db_xref="GeneID:1254755" CDS 3397952..3398437 /gene="yqjF" /locus_tag="STM3232" /note="similar to E. coli orf, hypothetical protein (AAC76136.1); Blastp hit to AAC76136.1 (160 aa), 81% identity in aa 1 - 160" /codon_start=1 /transl_table=11 /product="putative membrane-associated protein" /protein_id="NP_462146.1" /db_xref="GI:16766531" /db_xref="GeneID:1254755" /translation="MILSSDNNDAPNRVIAHENSSSRRIGPLENKMKKLEDVGVLIAR ILMPVLFITAGWGKISGYAGTQQYMEAMGVPGFLLPLTILLEFGGGLAILLGFLTRTT ALFTAGFTLLTALIFHSNFAEGVNSLMFMKNLTIAGGFLLLALTGPGAFSLDRLLNKK W" gene 3398493..3399491 /gene="yqjG" /locus_tag="STM3233" /db_xref="GeneID:1254756" regulatory 3398493..3398498 /regulatory_class="ribosome_binding_site" /gene="yqjG" /locus_tag="STM3233" /note="putative RBS for yqjG; RegulonDB:STMS1H003259" CDS 3398505..3399491 /gene="yqjG" /locus_tag="STM3233" /note="similar to E. coli putative transferase (AAC76137.1); Blastp hit to AAC76137.1 (328 aa), 92% identity in aa 1 - 328" /codon_start=1 /transl_table=11 /product="glutathione-dependent reductase" /protein_id="NP_462147.1" /db_xref="GI:16766532" /db_xref="GeneID:1254756" /translation="MGQLIDGVWHDTWYDTKSSGGKFQRSASAFRNWLTADGAPGPSG EGGFAAEKDRYHLYVSLACPWAHRTLIFRKLKGLEPFIPVSVVNPLMLENGWTFDDTF PAATGDTLYQHEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNSAF DGLGAKAGDYYPPALQSKIDELNGWIYDNVNNGVYKAGFATSQQAYDEAVDKVFTALA RLEQILGQHRYLTGDQLTEADIRLWTTLVRFDPVYVTHFKCDKYRISDYLNLYGFLRD IYQISGIAETVNMDHIRHHYFRSHKTINPTGIISVGPWQDLLEPHGRDVRFG" gene 3399606..3399980 /gene="yhaH" /locus_tag="STM3234" /db_xref="GeneID:1254757" regulatory 3399606..3399611 /regulatory_class="ribosome_binding_site" /gene="yhaH" /locus_tag="STM3234" /note="putative RBS for yhaH; RegulonDB:STMS1H003260" CDS 3399615..3399980 /gene="yhaH" /locus_tag="STM3234" /note="similar to E. coli putative cytochrome (AAC76138.1); Blastp hit to AAC76138.1 (121 aa), 89% identity in aa 1 - 118" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462148.1" /db_xref="GI:16766533" /db_xref="GeneID:1254757" /translation="MDWYLKVLKNYLGFGGRARRKEYWMFILVNIIFTFVLGLLDAML GWQRAGGEGVLTTIYGVLIFLPWWAVQFRRLHDTDRSAWWLLLLLIPIIGWLIIIAFN CQNGTPGDNRFGPDPKRFS" gene complement(3400019..3400924) /gene="yhaJ" /locus_tag="STM3235" /db_xref="GeneID:1254758" CDS complement(3400019..3400915) /gene="yhaJ" /locus_tag="STM3235" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC76140.1); Blastp hit to AAC76140.1 (298 aa), 96% identity in aa 1 - 298" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_462149.1" /db_xref="GI:16766534" /db_xref="GeneID:1254758" /translation="MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQK LEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTLV TEALVPTPAFFPLIDRLAAKANTQLSLITEVLAGAWERLEQGRADIVIAPDMHFRSSS EINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGVAVADTARERPVLTVQLLD KQPRLTVSTIEDKRQALLAGLGVATMPYSMVEQDIAEGRLRVVSPESTSEIDIIMAWR RDSMGEAKAWCLREIPKLFAGK" regulatory complement(3400919..3400924) /regulatory_class="ribosome_binding_site" /gene="yhaJ" /locus_tag="STM3235" /note="putative RBS for yhaJ; RegulonDB:STMS1H003261" gene 3401007..3401721 /gene="yhaK" /locus_tag="STM3236" /db_xref="GeneID:1254759" regulatory 3401007..3401012 /regulatory_class="ribosome_binding_site" /gene="yhaK" /locus_tag="STM3236" /note="putative RBS for yhaK; RegulonDB:STMS1H003262" CDS 3401020..3401721 /gene="yhaK" /locus_tag="STM3236" /note="similar to E. coli orf, hypothetical protein (AAC76141.1); Blastp hit to AAC76141.1 (233 aa), 84% identity in aa 1 - 233" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462150.1" /db_xref="GI:16766535" /db_xref="GeneID:1254759" /translation="MITTRTAKQCGQADYGWLQARYTFSFGHYFDPTLLGYASLRVLN QEVLAPGASFQPRTYPKVDILNLILDGEAEYRDSDGNHVQAKAGEALLLAAQPGISYS EHNISKVKPLTRMQLWLDACPERENTLVQKIPLLAAQQQLLASPDGEQNSLQLRQQVW VHHITLEKGESLNFQLHGPRAYLQSIHGTFHAMTHNEEREALTCGDGAFIRDEPNITL VADTPLRALLVDLPV" gene 3401732..3401909 /gene="yhaL" /locus_tag="STM3237" /db_xref="GeneID:1254760" regulatory 3401732..3401737 /regulatory_class="ribosome_binding_site" /gene="yhaL" /locus_tag="STM3237" /note="putative RBS for yhaL; RegulonDB:STMS1H003263" CDS 3401745..3401909 /gene="yhaL" /locus_tag="STM3237" /note="similar to E. coli orf, hypothetical protein (AAC76142.1); Blastp hit to AAC76142.1 (56 aa), 70% identity in aa 3 - 56" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462151.1" /db_xref="GI:16766536" /db_xref="GeneID:1254760" /translation="MSKKSAKKRQPVVKPAVQEAMSAAVPLGYEEMLTELEAIVADAE ARLAEEEAAA" gene complement(3402022..3403344) /gene="yhaN" /locus_tag="STM3238" /db_xref="GeneID:1254761" CDS complement(3402022..3403332) /gene="yhaN" /locus_tag="STM3238" /note="similar to E. coli orf, hypothetical protein (AAC76143.1); Blastp hit to AAC76143.1 (188 aa), 92% identity in aa 1 - 187" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462152.1" /db_xref="GI:16766537" /db_xref="GeneID:1254761" /translation="MFESKINPLWQSFILAVQEEVKPALGCTEPISLALAAAAAAAEL NGTVERIDAWVSPNLMKNGMGVTVPGTGMVGLPIAAALGALGGDAKAGLEVLKDASAK AVADAKAMLAAGHVAVMLQEPCNDILFSRAKVYSGDSWACVTIVGDHTNIVRIETDKG VVFTQADNAQEEEKTSPLGVLSHTSLEEILAFVNAVPFDAIRFILDAARLNGALSQEG LRGSWGLHIGSTLAKQCDRGLLAKDLSTAILIRTSAASDARMGGATLPAMSNSGSGNQ GITATVPVMVVAEHVGADDERLARALMLSHLSAIYIHHQLPRLSALCAATTAAMGAAA GMAWLIDGRYDTIAMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDT AVTGNEGIVAHNVEQSISNLCSLACRSMQQTDKQIIEIMASKAH" regulatory complement(3403339..3403344) /regulatory_class="ribosome_binding_site" /gene="yhaN" /locus_tag="STM3238" /note="putative RBS for yhaN; RegulonDB:STMS1H003264" gene complement(3403358..3404698) /gene="yhaO" /locus_tag="STM3239" /db_xref="GeneID:1254762" CDS complement(3403358..3404689) /gene="yhaO" /locus_tag="STM3239" /note="similar to E. coli putative transport system permease protein (AAC76145.1); Blastp hit to AAC76145.1 (425 aa), 97% identity in aa 3 - 425" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462153.1" /db_xref="GI:16766538" /db_xref="GeneID:1254762" /translation="MESASNTSVILDASAPARRAGMTESEWREAIKFDSTDTGWVIMS IGMAIGAGIVFLPVQVGLMGLWVFLLSSIIGYPAMYLFQRLFINTLAESPECKDYPSV ISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGL VLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNIGALPPMALLI KNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFF YAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAGWVKVVSVILNIFAVMTAFFG VYLGFREATQGIVMNILRRKMPAEKIKENLVQRGIMIFAILLAWSAIVLNAPVLSFTS ICSPIFGMVGCLIPAWLVYKVPALHKYKGASLYLIIITGLLLCVSPFLAFS" regulatory complement(3404693..3404698) /regulatory_class="ribosome_binding_site" /gene="yhaO" /locus_tag="STM3239" /note="putative RBS for yhaO; RegulonDB:STMS1H003265" gene complement(3405005..3406374) /gene="tdcG" /locus_tag="STM3240" /db_xref="GeneID:1254763" CDS complement(3405005..3406369) /gene="tdcG" /locus_tag="STM3240" /EC_number="4.3.1.17" /note="similar to E. coli L-serine dehydratase (deaminase), L-SD2 (AAC75839.1); Blastp hit to AAC75839.1 (455 aa), 74% identity in aa 1 - 452" /codon_start=1 /transl_table=11 /product="L-serine ammonia-lyase" /protein_id="NP_462154.1" /db_xref="GI:16766539" /db_xref="GeneID:1254763" /translation="MISAFDIFKIGIGPSSSHTVGPMNAGKCFIDRLIDSGDLPRTTR ITVDLYGSLSLTGKGHATDTAVIMGLAGNTPQDVNIDSIPAFIQEVARSSRLSVAGGA HVVDFPVADSIFFHAETLARHENGMRITAWNGQAPLLHKTYYSIGGGFIVEEERFGQS HDVEKSVPYDFHSASELLTLCERQGLSVSGLMMQNELALRSKEQIDAGFARIWQVMAT GIERGMNTEGVLPGPLNVPRRAVALRRLLVSSDNLSRDPMNVIDWINMFALAVSEENA AGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNANSIARYLLSAGAIGMLYKMNASISG AEVGCQGEVGVACSMAAAGLTELLGGSPAQVCIAAEIAMEHNLGLTCDPVAGQVQIPC IERNAINAVKAVNAARMALRRTSEPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIK VVCG" regulatory complement(3406369..3406374) /regulatory_class="ribosome_binding_site" /gene="tdcG" /locus_tag="STM3240" /note="putative RBS for tdcG; RegulonDB:STMS1H003266" gene complement(3406439..3408748) /gene="tdcE" /locus_tag="STM3241" /db_xref="GeneID:1254764" CDS complement(3406439..3408733) /gene="tdcE" /locus_tag="STM3241" /EC_number="2.3.1.54" /note="similar to E. coli probable formate acetyltransferase 3 (AAC76149.1); Blastp hit to AAC76149.1 (746 aa), 93% identity in aa 1 - 741" /codon_start=1 /transl_table=11 /product="formate C-acetyltransferase" /protein_id="NP_462155.1" /db_xref="GI:16766540" /db_xref="GeneID:1254764" /translation="MKVNIDTSDMLYAEAWRDFKGTDWKEEINVRDFIQHNYTPYEGD ESFLADATPATTALWEKVMAGIRIENATHAPVDFDTNIATTITAHDAGYIEKELEKIV GLQTDKPLKRALHPFGGVNMIKSSFHAYGREMDADFEYTFTDLRKTHNQGVFDVYSPD MLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGIRYLVRERELQFADLQSNLEQGQNL EATIRLREELAEHRRALLQMQEMAAKYGYDISRPARNAQEAVQWLYFAYLAAVKSQNG GAMSLGRTASFLDIYIERDFNAGLLTEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSG DPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEALPVAFKKYA AQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYA INGGVDEKLKIQVGPKTAPLTDEVLDYDAVMESLDHFMDWLAVQYISALNIIHYMHDK YSYEASLMALHDRDVYRTMACGIAGLSVAADSLSAIRYAQVKPIRDENGLAIDFAIEG EYPQYGNNDERVDSIACDLVKRFMQKISVLPTYRNAVPTQSILTITSNVVYGQKTGNT PDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKE DAVRKTNLVGLLDGYFHHEAQVEGGQHLNVNVMNREMLLDAIEHPENYPNLTIRVSGY AVRFNALTREQQQDVISRTFTQAM" regulatory complement(3408743..3408748) /regulatory_class="ribosome_binding_site" /gene="tdcE" /locus_tag="STM3241" /note="putative RBS for tdcE; RegulonDB:STMS1H003267" gene complement(3408767..3409988) /gene="tdcD" /locus_tag="STM3242" /db_xref="GeneID:1254765" CDS complement(3408767..3409975) /gene="tdcD" /locus_tag="STM3242" /EC_number="2.7.2.-" /note="propionate kinase. (SW:TDCD_SALTY)" /codon_start=1 /transl_table=11 /product="propionate/acetate kinase" /protein_id="NP_462156.1" /db_xref="GI:16766541" /db_xref="GeneID:1254765" /translation="MNEFPVVLVINCGSSSIKFSVLDVATCDVLMAGIADGMNTENAF LSINGDKPINLAHSNYEDALKAIAFELEKRDLTDSVALIGHRIAHGGELFTQSVIITD EIIDNIRRVSPLAPLHNYANLSGIDAARHLFPAVRQVAVFDTSFHQTLAPEAYLYGLP WEYFSSLGVRRYGFHGTSHRYVSRRAYELLDLDEKDSGLIVAHLGNGASICAVRNGQS VDTSMGMTPLEGLMMGTRSGDVDFGAMAWIAKETGQTLSDLERVVNKESGLLGISGLS SDLRVLEKAWHEGHERARLAIKTFVHRIARHIAGHAASLHRLDGIIFTGGIGENSVLI RQLVIEHLGVLGLTLDVEMNKQPNSHGERIISANPSQVICAVIPTNEEKMIALDAIHL GNVKAPVEFA" regulatory complement(3409983..3409988) /regulatory_class="ribosome_binding_site" /gene="tdcD" /locus_tag="STM3242" /note="putative RBS for tdcD; RegulonDB:STMS1H003268" gene complement(3410041..3411383) /gene="tdcC" /locus_tag="STM3243" /db_xref="GeneID:1254766" CDS complement(3410041..3411372) /gene="tdcC" /locus_tag="STM3243" /note="anaerobically inducible; similar to E. coli anaerobically inducible L-threonine, L-serine permease (AAC76151.1); Blastp hit to AAC76151.1 (443 aa), 94% identity in aa 1 - 443" /codon_start=1 /transl_table=11 /product="threonine/serine transporter TdcC" /protein_id="NP_462157.1" /db_xref="GI:16766542" /db_xref="GeneID:1254766" /translation="MSTTDSIVSSQAKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRA GFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITF LYFFAICPLLWIYGVTITNTFMTFWENQLQMPALNRGFVALFLLLLMAFVIWFGKDLM VKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLSNIALTGHDGILVTVWLGISIM VFSFNFSPIVSSFVVSKREEYEKEFGREFTERKCSQIISRASMLMVAVVMFFAFSCLF TLSPQNMADAKAQNIPVLSYLANHFASLSGTKSTFATVLEYGASIIALVAIFKSFFGH YLGTLEGLNGLVLKFGYKGDKTKVSMGKLNTISMIFIMGSTWVVAYANPNILDLIEAM GAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTLIGLLTILNIVYKLF" regulatory complement(3411378..3411383) /regulatory_class="ribosome_binding_site" /gene="tdcC" /locus_tag="STM3243" /note="putative RBS for tdcC; RegulonDB:STMS1H003269" gene complement(3411393..3412399) /gene="tdcB" /locus_tag="STM3244" /db_xref="GeneID:1254767" CDS complement(3411393..3412382) /gene="tdcB" /locus_tag="STM3244" /EC_number="4.3.1.19" /note="catabolic; similar to E. coli threonine dehydratase, catabolic (AAC76152.1); Blastp hit to AAC76152.1 (329 aa), 95% identity in aa 1 - 329" /codon_start=1 /transl_table=11 /product="threonine ammonia-lyase" /protein_id="NP_462158.1" /db_xref="GI:16766543" /db_xref="GeneID:1254767" /translation="MHITYDLPVAIEDILEAKKRLAGKIYKTGMPRSNYFSERCKGEI FLKFENMQRTGSFKIRGAFNKLSSLTEAEKRKGVVACSAGNHAQGVSLSCAMLGIDGK VVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVETEGRIFIPPYDDPKVIA GQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVHGMAA SYYTGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQR NKVITEGAGALACAALLSGKLDSHIQNRKTVSIISGGNIDLSRVSQITGLVDA" regulatory complement(3412394..3412399) /regulatory_class="ribosome_binding_site" /gene="tdcB" /locus_tag="STM3244" /note="putative RBS for tdcB; RegulonDB:STMS1H003270" gene complement(3412480..3413427) /gene="tdcA" /locus_tag="STM3245" /db_xref="GeneID:1254768" CDS complement(3412480..3413418) /gene="tdcA" /locus_tag="STM3245" /note="LysR family; similar to E. coli transcriptional activator of tdc operon (AAC76153.1); Blastp hit to AAC76153.1 (312 aa), 89% identity in aa 1 - 311" /codon_start=1 /transl_table=11 /product="transcriptional regulator TdcA" /protein_id="NP_462159.1" /db_xref="GI:16766544" /db_xref="GeneID:1254768" /translation="MNTLVLPKTQHLVVFQEVIRSGSIGSAAKSLGLTQPAVSKIISD VEAYFGVELIVRKNTGVTLTEAGQVLLSWSESITREMKNMINEMNSMTCNTVVDVSFG FPSLIGFTFMSDMIHKFKEVFPKAQVSMYEAQLSSFLPALRDGRLDFAIGTLSNEMQL QDLHVEPLFESEFVLVASKSRTCTGTITLESLKDEQWVLPQTNMGYYSELLTTLQRNG ISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTTPFGSNQFITIPIQDTLPVARYAAV WSKNYRIKKAASVLVELAKQYSSYNGCRRRQLIEIE" regulatory complement(3413422..3413427) /regulatory_class="ribosome_binding_site" /gene="tdcA" /locus_tag="STM3245" /note="putative RBS for tdcA; RegulonDB:STMS1H003271" protein_bind complement(3413479..3413499) /note="putative binding site for CRP, RegulonDB: STMS1H000117" /bound_moiety="CRP" protein_bind complement(3413543..3413557) /note="putative binding site for IHF, RegulonDB: STMS1H000232" /bound_moiety="IHF" protein_bind complement(3413581..3413603) /note="putative binding site for FNR, RegulonDB: STMS1H000168" /bound_moiety="FNR" protein_bind complement(3413603..3413619) /note="putative binding site for TdcA, RegulonDB: STMS1H000369" /bound_moiety="TdcA" protein_bind complement(3413647..3413663) /note="putative binding site for LysR, RegulonDB: STMS1H000268" /bound_moiety="LysR" protein_bind complement(3413694..3413718) /note="putative binding site for TdcR, RegulonDB: STMS1H000370" /bound_moiety="TdcR" gene 3414806..3415186 /gene="rnpB" /locus_tag="STM3246" /db_xref="GeneID:1254769" regulatory 3414806..3414811 /regulatory_class="ribosome_binding_site" /gene="rnpB" /locus_tag="STM3246" /note="putative RBS for rnpB; RegulonDB:STMS1H003272" ncRNA 3414810..3415186 /ncRNA_class="other" /gene="rnpB" /locus_tag="STM3246" /product="regulatory RNA" /db_xref="GeneID:1254769" gene complement(3415217..3416374) /gene="garK" /locus_tag="STM3247" /db_xref="GeneID:1254770" CDS complement(3415217..3416362) /gene="garK" /locus_tag="STM3247" /note="similar to E. coli orf, hypothetical protein (AAC76158.1); Blastp hit to AAC76158.1 (408 aa), 86% identity in aa 28 - 408" /codon_start=1 /transl_table=11 /product="glycerate 2-kinase" /protein_id="NP_462160.1" /db_xref="GI:16766545" /db_xref="GeneID:1254770" /translation="MKIVIAPDSYKESLSAAEVAQAIEKGFREIFPDAQYVSVPVADG GEGTVEAMIAATQGVERAAWVTGPLGEKVKACWGMSGDGKTAFIEMAAASGLALVPPE KRNPLITTSRGTGELILQALESGASNIIIGIGGSATNDGGAGMMQALGAKLRDANGAD IGYGGGSLHCLSDIDISELDPRLKLCAIRVACDVSNPLIGDNGASRIFGPQKGATEEN IVELDRNLAHYADIIKKSLNVDVKTAPGAGAAGGMGAALMAFLGAELRSGIEIVTAAL NLEEHIHDCTLVVTGEGRIDSQSIRGKVPIGVANVAKKYHKPVIGIAGSLTHDVGIVH HYGIDAVFSVLTRIVTLEEAFRGAFDNIYRASRNVAAALAIGMRSAG" regulatory complement(3416369..3416374) /regulatory_class="ribosome_binding_site" /gene="garK" /locus_tag="STM3247" /note="putative RBS for garK; RegulonDB:STMS1H003273" gene complement(3416460..3417368) /gene="garR" /locus_tag="STM3248" /db_xref="GeneID:1254771" CDS complement(3416460..3417350) /gene="garR" /locus_tag="STM3248" /EC_number="1.1.1.60" /note="similar to E. coli putative dehydrogenase (AAC76159.1); Blastp hit to AAC76159.1 (299 aa), 97% identity in aa 4 - 299" /codon_start=1 /transl_table=11 /product="2-hydroxy-3-oxopropionate reductase" /protein_id="NP_462161.1" /db_xref="GI:16766546" /db_xref="GeneID:1254771" /translation="MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA GAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLA SREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV HTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLD AKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGN DDHSALACYYEKLAKVEVTR" regulatory complement(3417363..3417368) /regulatory_class="ribosome_binding_site" /gene="garR" /locus_tag="STM3248" /note="putative RBS for garR; RegulonDB:STMS1H003274" gene complement(3417376..3418158) /gene="garL" /locus_tag="STM3249" /db_xref="GeneID:1254772" CDS complement(3417376..3418146) /gene="garL" /locus_tag="STM3249" /note="similar to E. coli orf, hypothetical protein (AAC76160.1); Blastp hit to AAC76160.1 (256 aa), 90% identity in aa 1 - 256" /codon_start=1 /transl_table=11 /product="2-dehydro-3-deoxyglucarate aldolase" /protein_id="NP_462162.1" /db_xref="GI:16766547" /db_xref="GeneID:1254772" /translation="MNNAIFPNKFKAALAAQQVQIGCWSALASPITTEVLGLAGFDWL VLDGEHAPNDVTTLIPQLMALKGSASAPVVRVPTNEPVIIKRMLDIGFYNFLIPFVET QEEAARAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITIIVQIESQLGVDN VDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQQTIQHIFARAKAHGKPCGILAP VEADARRYLEWGATFVAVGSDLGAFRASTQKLADTFKK" regulatory complement(3418153..3418158) /regulatory_class="ribosome_binding_site" /gene="garL" /locus_tag="STM3249" /note="putative RBS for garL; RegulonDB:STMS1H003275" gene 3418659..3420247 /gene="garD" /locus_tag="STM3250" /db_xref="GeneID:1254773" regulatory 3418659..3418664 /regulatory_class="ribosome_binding_site" /gene="garD" /locus_tag="STM3250" /note="putative RBS for garD; RegulonDB:STMS1H003276" CDS 3418676..3420247 /gene="garD" /locus_tag="STM3250" /EC_number="4.2.1.42" /note="similar to E. coli putative hydrolase (AAC76162.1); Blastp hit to AAC76162.1 (523 aa), 93% identity in aa 1 - 523" /codon_start=1 /transl_table=11 /product="galactarate dehydratase" /protein_id="NP_462163.1" /db_xref="GI:16766548" /db_xref="GeneID:1254773" /translation="MANIEIRQESPSAFYIKVHETDNVAIIVNDHGLKAGTRFPDGLE LTEHIPQGHKVALTDIPAHGEIIRYGEVIGYAVRDIPRGSWIDESLVELPKAPPLNTL PLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKVIERDL LPKYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNIALNPNFGGEVMVIGLGCEKL QPERLLEGTEDVPAIAVESASIVRLQDEQHVGFKSMVDDILRVAERHLTKLNQRQRET CPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTP RAINEAVGKRLLDEMAWYDNYLDMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGK SAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVP VIKMATRTELANRWYDLMDINAGTIATGEETIEDVGWKLFHFILDVASGRKKTFSDQW GLHNQLAVFNPAPVT" gene complement(3420487..3421440) /locus_tag="STM3251" /db_xref="GeneID:1254774" CDS complement(3420487..3421434) /locus_tag="STM3251" /note="similar to E. coli ribokinase (AAC76775.1); Blastp hit to AAC76775.1 (309 aa), 23% identity in aa 6 - 308" /codon_start=1 /transl_table=11 /product="sugar kinase" /protein_id="NP_462164.1" /db_xref="GI:16766549" /db_xref="GeneID:1254774" /translation="MNITIATLGELLVEFLAKKENQGFSSPGEFWGPYPSGAPAIFAD QVAKLGFRSLLFSCVGNDAFGVMNITRLSRDGVNVQGISVLPNATTGSAFVSYRSQAQ RDFIFNMPDSACGLLSADHLDETLLRQYRHFHIMGSSLFSFRLIDAVRKAISIVKENG GTISFDPNIRKEMLKIREMSQAFEYILDYTDFFLPSDGELDYFGLSKSRDEEKIVARL HKRGIAHVIIKRGARGASYYSKDEQHHVAGYPVKVVDPTGAGDCFGATFVSLFLAGYS VPDALAHANAAGSLAISARGPMEGTSTLAQIKELMRQQN" regulatory complement(3421435..3421440) /regulatory_class="ribosome_binding_site" /locus_tag="STM3251" /note="putative RBS for STM3251; RegulonDB:STMS1H003277" gene complement(3421445..3422298) /gene="agaR" /locus_tag="STM3252" /db_xref="GeneID:1254775" CDS complement(3421445..3422278) /gene="agaR" /locus_tag="STM3252" /note="DeoR family; similar to E. coli putative DEOR-type transcriptional regulator of aga operon (AAC76165.1); Blastp hit to AAC76165.1 (269 aa), 26% identity in aa 10 - 252" /codon_start=1 /transl_table=11 /product="DeoR family transcriptional regulator" /protein_id="NP_462165.1" /db_xref="GI:16766550" /db_xref="GeneID:1254775" /translation="MAKPSTSLLKRRLDIAEIVRKNGEIKVDDLAEMLSVSGVTIRND LNYLEQQGYLKRSFGGAIYTAQPVRAAVSHEVVQSQALEHSVELELAKQVARLVCDDD TVFLGAGEVLRKALPFLGDYRDLCLIINDLSHVAPARDYIDGEIVLLGGVLGHSGQAL GGEIAIQSLQQFQPSCCLVMVDHISEDGTLNVKNESAAALLSECLRLSGQSIAVVAQR PIHDVARYPVGKLNTLSAIITPQIVAAEYHSRFLADGLTNSYTNNECLTWINPTLHQA R" regulatory complement(3422293..3422298) /regulatory_class="ribosome_binding_site" /gene="agaR" /locus_tag="STM3252" /note="putative RBS for agaR; RegulonDB:STMS1H003278" gene 3422547..3423466 /locus_tag="STM3253" /db_xref="GeneID:1254776" regulatory 3422547..3422555 /regulatory_class="minus_35_signal" /locus_tag="STM3253" /note="putative -35_signal for STM3253; RegulonDB:STMLTH004583" regulatory 3422573..3422581 /regulatory_class="minus_10_signal" /locus_tag="STM3253" /note="putative -10_signal for STM3253; RegulonDB:STMLTH004583" regulatory 3422600..3422605 /regulatory_class="ribosome_binding_site" /locus_tag="STM3253" /note="putative RBS for STM3253; RegulonDB:STMS1H003279" CDS 3422612..3423466 /locus_tag="STM3253" /EC_number="4.1.2.-" /note="similar to E. coli tagatose-bisphosphate aldolase 1 (AAC75157.1); Blastp hit to AAC75157.1 (286 aa), 65% identity in aa 3 - 285" /codon_start=1 /transl_table=11 /product="putative fructose/tagatose biphosphate aldolase" /protein_id="NP_462166.1" /db_xref="GI:16766551" /db_xref="GeneID:1254776" /translation="MFIISSKNMLQKAQHAGYAVPAFNIHNLETLQVVVETAAEMRSP LIVAGTPGTFSYAGMGNIVAIAGDLAREYNLPLAIHLDHHESLADIESKVMAGIRSVM IDGSHFPFEENVALVKSVVDFCHRYDTSVEAELGRLGGIEDDLVVDSKDALYTNPQQA REFVARTGIDSLAVAIGTAHGMYAAEPKLDFERLAEIRALVDIPLVLHGASGLPESDI RQAISLGVCKVNVATELKIAFSDALKEYFLQNPKANDPRHYMQPAKQAMKEVVRKVIH VCGCEGQL" gene 3423470..3424391 /locus_tag="STM3254" /db_xref="GeneID:1254777" regulatory 3423470..3423475 /regulatory_class="ribosome_binding_site" /locus_tag="STM3254" /note="putative RBS for STM3254; RegulonDB:STMS1H003280" CDS 3423477..3424391 /locus_tag="STM3254" /note="similar to E. coli 6-phosphofructokinase II; suppressor of pfkA (AAC74793.1); Blastp hit to AAC74793.1 (309 aa), 27% identity in aa 4 - 291" /codon_start=1 /transl_table=11 /product="1-phosphofructokinase" /protein_id="NP_462167.1" /db_xref="GI:16766552" /db_xref="GeneID:1254777" /translation="MIYTLTLNSAIDMNIFSDPLQPNIVNRTHHTEFCPNGKGVNVAL VLDHFQIPAHILGIFGGFTGHYIVESLRTRKMPVTPAWVEEPTRINIFIHDGKQEYKL VNPGSYIPDECKQQIITIISQLPDADYLVISGSLPQGIESRFYAEIMHICQQKNIGVI LDISHPSLRQLLEFKPLLIKPNDEEVKAIFGLTVSDDNDAKNTLTTLHALGAQNVLLT LGAKGMYFSNGIDYWFCSAPTVDLVSSACAGDAALAAFLSQWLSTGEVEYALSLASAT GADVASSAGLGQLAAIETLLSQIHVRKL" gene 3424413..3425845 /locus_tag="STM3255" /db_xref="GeneID:1254778" regulatory 3424413..3424418 /regulatory_class="ribosome_binding_site" /locus_tag="STM3255" /note="putative RBS for STM3255; RegulonDB:STMS1H003281" CDS 3424418..3425845 /locus_tag="STM3255" /EC_number="2.7.1.191" /note="similar to E. coli PTS system, fructose-specific transport protein (AAC75228.1); Blastp hit to AAC75228.1 (563 aa), 42% identity in aa 104 - 562, 32% identity in aa 2 - 41" /codon_start=1 /transl_table=11 /product="PTS fructose transporter subunit IIC" /protein_id="NP_462168.1" /db_xref="GI:16766553" /db_xref="GeneID:1254778" /translation="MKKIIAVTGCPTGIAHTFMAEEALKNAAKKLSVEIKVETNGASG VENAIQPADLVDIAGVIIAADKDVLPDRFNGLPVIEVPVKEAIHHPAELINKVINGEA PIRKGESTTSTEIIEKESLGRQIYKHLMSGVSNMLPFVVAGGILIAVSFLWGIYSADP NSAEYNATAAMLMKIGQQAFSIMVPVFTAYIAFSISGRPGMVAGFVGGLLANATGAGF LGGIIAGFAAGYLMLWVKNRLEGLPRQYEGLKSIFIMPLIGVLVIGVLMSLLGQPVAA INNSMMNWLASLQEANPILLGIVVGAMCSFDFGGPVNKAAYVTGTLLLGQGNFYFMAG VSAACITPPLVIALATTFFPKGFSEEERAAGMVNYILGCTHITEGAIPFAAKDPLRVI PMMMIASSISAVLSYSLRIQVPAPHGGFLILPLVSQPLAWVLCILAGSACGAVMLGLW RLWAVRKNSVNTTPVAKAGGQNAAL" gene 3425825..3426638 /locus_tag="STM3256" /db_xref="GeneID:1254779" regulatory 3425825..3425830 /regulatory_class="ribosome_binding_site" /locus_tag="STM3256" /note="putative RBS for STM3256; RegulonDB:STMS1H003282" CDS 3425832..3426638 /locus_tag="STM3256" /EC_number="2.7.1.191" /note="similar to E. coli PTS system, fructose-specific IIA/fpr component (AAC75230.1); Blastp hit to AAC75230.1 (376 aa), 52% identity in aa 3 - 141, 41% identity in aa 197 - 374" /codon_start=1 /transl_table=11 /product="PTS fructose transporter subunit IIA" /protein_id="NP_462169.1" /db_xref="GI:16766554" /db_xref="GeneID:1254779" /translation="MQLCEHDIFISDERLDKVTALHRVVEKLSAAGNTTTDYLRGMLD REAQISTYLGNGIAIPHGTPESRDAVLQTGVKVIVFRHGVDWGDGNTAYLVTGIAARS NEHLEILRQLTRVLSDDAILQALAKAESPSQVLALLTGSTTNTPAAVELQEGEQATFV IHNPHGLHARPSAVLVKFIKQFQSHITVENLDNASGPVDGKNLMRVVSLGAKKGHRLL FRAQGEDAQQALREIGELIASGAGEMITVPVTPPPEVMQPKRSWLSRLFN" gene 3426824..3428107 /locus_tag="STM3257" /db_xref="GeneID:1254780" regulatory 3426824..3426829 /regulatory_class="ribosome_binding_site" /locus_tag="STM3257" /note="putative RBS for STM3257; RegulonDB:STMS1H003283" CDS 3426836..3428107 /locus_tag="STM3257" /EC_number="2.7.1.144" /note="similar to E. coli putative tagatose 6-phosphate kinase 1 (AAC75156.1); Blastp hit to AAC75156.1 (420 aa), 72% identity in aa 1 - 418" /codon_start=1 /transl_table=11 /product="D-tagatose-1,6-bisphosphate aldolase subunit GatZ" /protein_id="NP_462170.1" /db_xref="GI:16766555" /db_xref="GeneID:1254780" /translation="MKEIIARHKAGEHLGICSVCSAHPLVIESALLFDLNTDNKVLIE ATSNQVNQFGGYTGMKPADFRDFVYGIAQEVGFPRERLILGGDHLGPNCWQNEPAAAA MEKSVELIKAYVAAGFSKIHLDASMSCADDPTPLDPMVVARRAAVLCKAAEGTANEEQ KCHLTYVIGTEVPVPGGEASTIGSVHVTREVDAARTLETHQIAFRESGLEEALSRVIA IVVQPGVEFDHTQIIHYQPQAAQALSAWIKETPMVYEAHSTDYQTRQAYRALVRDHYA ILKVGPALTFALREAIFALAQMENELISPEQRSRVLEVIDEVMLNEPGYWKKYYRPTW SQAMVDIHFSLSDRIRYYWPHPRIRQSVEKLIANLNNVTLPLGLISQFMPVQFERLSE GVLTPTPHNLIIDKIQDVLRAYRFGCTPDVA" gene 3428111..3428586 /locus_tag="STM3258" /db_xref="GeneID:1254781" regulatory 3428111..3428116 /regulatory_class="ribosome_binding_site" /locus_tag="STM3258" /note="putative RBS for STM3258; RegulonDB:STMS1H003284" CDS 3428122..3428586 /locus_tag="STM3258" /EC_number="2.7.1.191" /note="sugar specific-family of transport protein; similar to E. coli galactitol-specific enzyme IIA of phosphotransferase system (AAC75155.1); Blastp hit to AAC75155.1 (150 aa), 60% identity in aa 1 - 150" /codon_start=1 /transl_table=11 /product="PTS galactitol transporter subunit IIA" /protein_id="NP_462171.1" /db_xref="GI:16766556" /db_xref="GeneID:1254781" /translation="MSQLFVRTGITFDSSQQALAHIGKEMLAKGVVHDSYPQALVERE ASFPTGIALERHAVAIPHCEAVHAKSPAIYLIRPDKPVMFQQADDDEEIAVSLIIALI VENPAAQLKLLRRLFSELQNPSTLDALLSAPDAELAIRFQETILEPEQCVQV" gene 3428605..3428901 /locus_tag="STM3259" /db_xref="GeneID:1254782" regulatory 3428605..3428610 /regulatory_class="ribosome_binding_site" /locus_tag="STM3259" /note="putative RBS for STM3259; RegulonDB:STMS1H003285" CDS 3428617..3428901 /locus_tag="STM3259" /EC_number="2.7.1.191" /note="similar to E. coli galactitol-specific enzyme IIB of phosphotransferase system (AAC75154.1); Blastp hit to AAC75154.1 (94 aa), 77% identity in aa 1 - 94" /codon_start=1 /transl_table=11 /product="PTS galactitol transporter subunit IIB" /protein_id="NP_462172.1" /db_xref="GI:16766557" /db_xref="GeneID:1254782" /translation="MKRKVIVACGGAVATSTMAAEEIKELCDANHIELDLVQCRVTEI ETYMDGADLICTTARVDRAFGNIPVVHGMPFVSGVGIEALQQKILSILMG" gene 3428893..3430278 /locus_tag="STM3260" /db_xref="GeneID:1254783" regulatory 3428893..3428898 /regulatory_class="ribosome_binding_site" /locus_tag="STM3259" /note="putative RBS for STM3260; RegulonDB:STMS1H003286" CDS 3428905..3430278 /locus_tag="STM3260" /note="similar to E. coli PTS system galactitol-specific enzyme IIC (AAC75153.1); Blastp hit to AAC75153.1 (451 aa), 85% identity in aa 1 - 446" /codon_start=1 /transl_table=11 /product="PTS galactitol transporter subunit IIC" /protein_id="NP_462173.1" /db_xref="GI:16766558" /db_xref="GeneID:1254783" /translation="MFSEIMRYILDLGPTVMLPLVIIVFSKLLGMKLGDCFKSGLHIG IGFVGIGLVIGLMLDSIGPAAKAMAEHFQINLHVIDVGWPGSSPMTWASQIALVAIPV AIGVNVLMLVTRMTRVVNVDIWNIWHMTFTGAMLHLATGSYWLGILGVVVHAAFVYKL GDWFAKDTRDYFGLEGIAIPHGSSAYLGPVAVLVDTIIEKIPGLNRIHFSADDVQKRF GPFGEPVTVGFVMGLVIGVLAGYDAKAVLQLAVKTAAVMLLMPRVIKPIMDGLTPIAK HARKRLQAKFGGQEFLIGLDPALLLGHTSVVSASLIFIPLTILIAVLVPGNQVLPFGD LATIGFFIAMAVAVHQGNLFRTLISGVIIMGITLWIATQTIGLHTQLAANAGALKAGG QVASLDQGGSPITWLLIQLFTWQNIVGFAVIAIIYLAGVLLTWRRARQFVAAEKATAL QQSQIAS" gene 3430310..3431365 /locus_tag="STM3261" /db_xref="GeneID:1254784" regulatory 3430310..3430315 /regulatory_class="ribosome_binding_site" /locus_tag="STM3261" /note="putative RBS for STM3261; RegulonDB:STMS1H003287" CDS 3430322..3431365 /locus_tag="STM3261" /EC_number="1.1.1.-" /note="similar to E. coli galactitol-1-phosphate dehydrogenase (AAC75152.1); Blastp hit to AAC75152.1 (346 aa), 68% identity in aa 1 - 344" /codon_start=1 /transl_table=11 /product="galactitol-1-phosphate 5-dehydrogenase" /protein_id="NP_462174.1" /db_xref="GI:16766559" /db_xref="GeneID:1254784" /translation="MKSVVIHAEGDVRVEERPLPQLQAEDDVLVKVVSSGLCGSDIPR IFAQGAHYYPITLGHEFSGYVESYGTGVTDMQPGDAVACVPLLPCFHCPQCERGYFSL CKQYQFVGSRSEGGNAEYVVVKRANLFRLPSDMPIEDGAFIEPITVGLHAFHLAQGCE GKNVIIVGAGTIGLLALQCARELGARSVTAIDINPQKLELAKALGATHTCNSREMTAD DIQTALSDIQFDQLVLETAGTPQTVSLAIDIAGPRAQLALVGTLHHDLTLTTRTFGLI LRKELTLLGSWMNYSAPWPGEEWETAARLLAEKRLQLTPLIAHRGDAESFAEAVKALN GAPMQGKILLQLS" gene 3431463..3432249 /locus_tag="STM3262" /db_xref="GeneID:1254785" regulatory 3431463..3431468 /regulatory_class="ribosome_binding_site" /locus_tag="STM3262" /note="putative RBS for STM3262; RegulonDB:STMS1H003288" CDS 3431476..3432249 /locus_tag="STM3262" /note="similar to E. coli split galactitol utilization operon repressor, interrupted (AAC75148.1); Blastp hit to AAC75148.1 (148 aa), 77% identity in aa 1 - 148" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_462175.1" /db_xref="GI:16766560" /db_xref="GeneID:1254785" /translation="MNSFERRNKIVDLINTQGSVLVMDLSNTFGISEVTIRADLRLLE EKGLVTRFHGGAAKPGSHLAEGDNQEVILEDRYQLASDPKKRIAQAAAAMVEEGMTII LDSGSTTLLIAEALARKSNITVITNSLPAAFTLSENKDLTLVVCGGTVRHKTHSMHGT IAERSLHGISADLMFVGADGIDATNGITTFNEGYSISGVMAAAAHKVIAVLDATKFNR RGFNQVLPMDKIDCVITDDTISKQDKAALAKTGVELMIV" gene complement(3432407..3433282) /gene="yraL" /locus_tag="STM3263" /db_xref="GeneID:1254786" CDS complement(3432407..3433270) /gene="yraL" /locus_tag="STM3263" /note="similar to E. coli orf, hypothetical protein (AAC76180.1); Blastp hit to AAC76180.1 (286 aa), 97% identity in aa 1 - 285" /codon_start=1 /transl_table=11 /product="16S rRNA (cytidine(1402)-2'-O)-methyltransferase" /protein_id="NP_462176.1" /db_xref="GI:16766561" /db_xref="GeneID:1254786" /translation="MKQNESADNSQGQLFIVPTPIGNLADITQRALEVLQAVDLIAAE DTRHTGLLLQHFGINARLFALHDHNEQQKAETLVAKLKEGQNIALVSDAGTPLINDPG YHLVRTCREAGIRVVPLPGPCAAIAALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIE TEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVK EDENRRKGEMVLIVEGHKAQEDDLPADALRTLALLQAELPLKKAAALAAEIHGVKKNA LYKYALEQQEE" regulatory complement(3433277..3433282) /regulatory_class="ribosome_binding_site" /gene="yraL" /locus_tag="STM3263" /note="putative RBS for yraL; RegulonDB:STMS1H003289" gene 3433323..3435376 /gene="yraM" /locus_tag="STM3264" /db_xref="GeneID:1254787" regulatory 3433323..3433328 /regulatory_class="ribosome_binding_site" /gene="yraM" /locus_tag="STM3264" /note="putative RBS for yraM; RegulonDB:STMS1H003290" CDS 3433334..3435376 /gene="yraM" /locus_tag="STM3264" /note="similar to E. coli putative glycosylase (AAC76181.1); Blastp hit to AAC76181.1 (678 aa), 80% identity in aa 1 - 678" /codon_start=1 /transl_table=11 /product="penicillin-binding protein activator" /protein_id="NP_462177.1" /db_xref="GI:16766562" /db_xref="GeneID:1254787" /translation="MVPSTFSRLNAARALPVVLAALLFAGCGTQAPDQSAAYMQGSAQ ADSAFYLHQMQQSADDSKTNWQLLAIHALLKEGKSQQAVDLFNQLPQNLNDTQRREQS LLAVEIKLAQKDVAGAQALLDKLKPADFAPNQQARYWQAQIVASQGRPSLTLLRALIA QEPLLAAKDKQKNIDATWQALSAMTPDQARTLVINADENVLQGWLDLQRVWFDNRNDP DMLKAGIADWQKRYPQNPGAKMLPTQLVNVQRFKPASTSKIALLLPLNGQAAVFGRTI QQGFEAAKNLGTQAVEMQPAAAPDAPVEPGVEETQPQMTNGVASPSQASVSDLTDDAP AQSATPVSAPQTPPATASAPADPSAELKIYDTSSQPLDQVLAQVQQDGASIVVGPLLK NNVEALMKSNTPLNVLALNQPETVRSFPNICYFALSPEDEARDAAHHIYDQGKQSPLL LIPRSALGDRVANAFTQEWQKLGGGIVLQQKFGSVAELKMGVNGGAGIALTGSPVAAS VPAQPGVTIGGLTIPAPPTDAQITGGGRVDAVYILATPEEIGFIKPMIAMRNGTQSGA TLYASSRSAQGTSGPDFRLEMEGLQYSEIPMLAGGNMPLMQQALSAVHNDYSLARMYA MGVDAWTLANHFSQMRQVQGFEINGNTGALTASPDCVINRKLSWLKYQQGEIVPAS" gene 3435322..3435729 /gene="yraN" /locus_tag="STM3265" /db_xref="GeneID:1254788" regulatory 3435322..3435327 /regulatory_class="ribosome_binding_site" /gene="yraN" /locus_tag="STM3265" /note="putative RBS for yraN; RegulonDB:STMS1H003291" CDS 3435334..3435729 /gene="yraN" /locus_tag="STM3265" /note="similar to E. coli orf, hypothetical protein (AAC76182.1); Blastp hit to AAC76182.1 (131 aa), 83% identity in aa 1 - 131" /codon_start=1 /transl_table=11 /product="YraN family protein" /protein_id="NP_462178.1" /db_xref="GI:16766563" /db_xref="GeneID:1254788" /translation="MAQIPARGDCSRQLTRKQAGDAWEAAARRWLESKGLRFIAANVR ERGGEIDLIMRDGKTTVFVEVRYRRSGLYGGAAASVTRSKQHKLLHTARLWLARQNGS FDTVDCRFDVLAFTGNEIEWFRDAFNDHS" gene 3435741..3436341 /gene="yraO" /locus_tag="STM3266" /db_xref="GeneID:1254789" regulatory 3435741..3435746 /regulatory_class="ribosome_binding_site" /gene="yraO" /locus_tag="STM3266" /note="putative RBS for yraO; RegulonDB:STMS1H003292" CDS 3435751..3436341 /gene="yraO" /locus_tag="STM3266" /note="similar to E. coli orf, hypothetical protein (AAC76183.1); Blastp hit to AAC76183.1 (196 aa), 98% identity in aa 3 - 196" /codon_start=1 /transl_table=11 /product="putative phosphoheptose isomerase" /protein_id="NP_462179.1" /db_xref="GI:16766564" /db_xref="GeneID:1254789" /translation="MLERIKVCFTESIQTQIAAAEALPDAISRAAMTLVHSLLNGNKI LCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQ VRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVE IRIPSHHSARIQEMHMLTVNCLCDLIDNTLFPHQDD" gene 3436340..3436926 /gene="yraP" /locus_tag="STM3267" /db_xref="GeneID:1254790" regulatory 3436340..3436345 /regulatory_class="ribosome_binding_site" /gene="yraP" /locus_tag="STM3267" /note="putative RBS for yraP; RegulonDB:STMS1H003293" CDS 3436351..3436926 /gene="yraP" /locus_tag="STM3267" /note="similar to E. coli putative periplasmic protein (AAC76184.1); Blastp hit to AAC76184.1 (191 aa), 92% identity in aa 1 - 191" /codon_start=1 /transl_table=11 /product="osmotically-inducible protein OsmY" /protein_id="NP_462180.1" /db_xref="GI:16766565" /db_xref="GeneID:1254790" /translation="MKAFSPLAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQ VDDGTLELRVSSALSKDEQIKKETRINVTAYQGKVLLVGQSPNSELSARAKQIAMGVE GTTEVYNEIRQGQPIGLGTASNDTWITTKVRSQLLTSDQVKSSNVKVTTENGEVFLLG LVTEREGKAAADIASRVSGVKRVTTAFTYIK" gene complement(3436993..3437680) /gene="yraR" /locus_tag="STM3268" /db_xref="GeneID:1254791" CDS complement(3436993..3437661) /gene="yraR" /locus_tag="STM3268" /note="similar to E. coli orf, hypothetical protein (AAC76186.1); Blastp hit to AAC76186.1 (226 aa), 86% identity in aa 6 - 226" /codon_start=1 /transl_table=11 /product="putative nucleoside-diphosphate-sugar epimerase" /protein_id="NP_462181.1" /db_xref="GI:16766566" /db_xref="GeneID:1254791" /translation="MQGGQICKGARMSQVLITGATGLVGGHLLRMLINTPQVSAIAAP TRRPLTDIVGVYNPHDPQLTDALAQVTDPVDIVFCCLGTTRREAGSKAAFIHADYTLV VDTALTGRRLGAQHMVVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSML LGDRTTRRVNETLFAPLFRLLPGNWKSIDARDVARAMLAEALAPAQEGVTILTSSQLR EKAE" regulatory complement(3437675..3437680) /regulatory_class="ribosome_binding_site" /gene="yraR" /locus_tag="STM3268" /note="putative RBS for yraR; RegulonDB:STMS1H003294" gene 3437749..3438277 /gene="yhbO" /locus_tag="STM3269" /db_xref="GeneID:1254792" regulatory 3437749..3437754 /regulatory_class="ribosome_binding_site" /gene="yhbO" /locus_tag="STM3269" /note="putative RBS for yhbO; RegulonDB:STMS1H003295" CDS 3437759..3438277 /gene="yhbO" /locus_tag="STM3269" /note="similar to E. coli orf, hypothetical protein (AAC76187.1); Blastp hit to AAC76187.1 (186 aa), 94% identity in aa 15 - 186" /codon_start=1 /transl_table=11 /product="protease" /protein_id="NP_462182.1" /db_xref="GI:16766567" /db_xref="GeneID:1254792" /translation="MSKKIAVLITDEFEDSEFTSPAAEFRQAGHEVITIEKEAGKTVK GKKGEASVTIDKAIDDVRPDEFDALLLPGGHSPDYLRGDSRFVDFTRDFVNSGKPVFA ICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLP AFNREALRLLGA" gene complement(3438257..3438710) /gene="yhbP" /locus_tag="STM3270" /db_xref="GeneID:1254793" CDS complement(3438257..3438700) /gene="yhbP" /locus_tag="STM3270" /note="similar to E. coli orf, hypothetical protein (AAC76188.1); Blastp hit to AAC76188.1 (147 aa), 83% identity in aa 1 - 147" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462183.1" /db_xref="GI:16766568" /db_xref="GeneID:1254793" /translation="MDTLTAIGRWLAKQHVVTWCVHHEGELWCANAFYLFDAQNVALY LLTDDKTRHAQMSGACAPVAGTVNGQPKTVARIRGVQFKGEIRRLEGQESDAARKAYL RRFPVARVLPAPVWEIRLDEIKFTDNTLGFGKKLHWLRDSRAQQA" regulatory complement(3438705..3438710) /regulatory_class="ribosome_binding_site" /gene="yhbP" /locus_tag="STM3270" /note="putative RBS for yhbP; RegulonDB:STMS1H003296" gene 3438718..3439055 /gene="yhbQ" /locus_tag="STM3271" /db_xref="GeneID:1254794" regulatory 3438718..3438723 /regulatory_class="ribosome_binding_site" /gene="yhbQ" /locus_tag="STM3271" /note="putative RBS for yhbQ; RegulonDB:STMS1H003297" CDS 3438738..3439055 /gene="yhbQ" /locus_tag="STM3271" /note="similar to E. coli orf, hypothetical protein (AAC76189.1); Blastp hit to AAC76189.1 (100 aa), 81% identity in aa 1 - 100" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462184.3" /db_xref="GI:1109557748" /db_xref="GeneID:1254794" /translation="MLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKA LRGKGELTLAFAAQVGDRSLALRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVL KND" gene complement(3439042..3439555) /gene="yhbS" /locus_tag="STM3272" /db_xref="GeneID:1254795" CDS complement(3439042..3439545) /gene="yhbS" /locus_tag="STM3272" /note="membrane; similar to E. coli orf, hypothetical protein (AAC76190.1); Blastp hit to AAC76190.1 (167 aa), 96% identity in aa 1 - 167" /codon_start=1 /transl_table=11 /product="GNAT family N-acetyltransferase" /protein_id="NP_462185.1" /db_xref="GI:16766570" /db_xref="GeneID:1254795" /translation="MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGL VATDDEGQVVGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNE FGYAAVVTLGDPALYSRFGFELAAHYDLHCRWPGTESAFQVHRLAEDALEGVTGLVEY HDHFNRF" gene complement(3439539..3440078) /gene="yhbT" /locus_tag="STM3273" /db_xref="GeneID:1254796" CDS complement(3439539..3440063) /gene="yhbT" /locus_tag="STM3273" /note="similar to E. coli orf, hypothetical protein (AAC76191.1); Blastp hit to AAC76191.1 (174 aa), 90% identity in aa 1 - 174" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462186.1" /db_xref="GI:16766571" /db_xref="GeneID:1254796" /translation="MLDKLRSRLVHAGPSLMSVPVKLTPFALKRQVLEQVLSWQFRQA LADGELEFLEGRWLSIHVRDIDLKWYTTVENEKLIVSQQADADVSFSADASDLLMIAA RKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRVMLLQLADFVEAGMK NSPETKQTSVGEPC" regulatory complement(3439550..3439555) /regulatory_class="ribosome_binding_site" /gene="yhbS" /locus_tag="STM3272" /note="putative RBS for yhbS; RegulonDB:STMS1H003298" regulatory complement(3440073..3440078) /regulatory_class="ribosome_binding_site" /gene="yhbT" /locus_tag="STM3273" /note="putative RBS for yhbT; RegulonDB:STMS1H003299" gene 3440269..3441275 /gene="yhbU" /locus_tag="STM3274" /db_xref="GeneID:1254797" regulatory 3440269..3440274 /regulatory_class="ribosome_binding_site" /gene="yhbU" /locus_tag="STM3274" /note="putative RBS for yhbU; RegulonDB:STMS1H003300" CDS 3440280..3441275 /gene="yhbU" /locus_tag="STM3274" /EC_number="3.4.-.-" /note="similar to E. coli putative collagenase (AAC76192.1); Blastp hit to AAC76192.1 (331 aa), 96% identity in aa 1 - 331" /codon_start=1 /transl_table=11 /product="putative protease" /protein_id="NP_462187.1" /db_xref="GI:16766572" /db_xref="GeneID:1254797" /translation="MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTE KKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEY AAERYPHIERHVSVQASATNEEAIRFYHRNFDVHRVVLPRVLSIHQVKQLARVTPVPL EVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLID RYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQR SPAYVSQVAKVWRQAIDRCKAAPQNFVPQRDWMETLGAMSEGTQTTLGAYHRKWQ" gene 3441247..3442162 /gene="yhbV" /locus_tag="STM3275" /db_xref="GeneID:1254798" regulatory 3441247..3441252 /regulatory_class="ribosome_binding_site" /gene="yhbV" /locus_tag="STM3275" /note="putative RBS for yhbV; RegulonDB:STMS1H003301" CDS 3441266..3442162 /gene="yhbV" /locus_tag="STM3275" /note="similar to E. coli orf, hypothetical protein (AAC76193.1); Blastp hit to AAC76193.1 (298 aa), 91% identity in aa 1 - 298" /codon_start=1 /transl_table=11 /product="putative protease" /protein_id="NP_462188.3" /db_xref="GI:1109557749" /db_xref="GeneID:1254798" /translation="MAVRGAMKYSLGPVLYYWPKETLEDFYQQAAKSSADVIYLGEAV CSKRRATKVGDWLEMAKSLAASGKQVVLSTLALVQASSELSELKRYVDNGDFLLEASD LGVVNLCAERKLPFVAGHALNCYNAVTLRRLLKEGMVRWCMPVELSRDWLVNLLNQCD ELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRDVLSQENQ QVFVLNGIQTMSGYVYNLGNELTSMQGLVDIVRLSPLGTETFAMLDAFRANENGGAPL PLAAHSDCNGYWKRLAGLELQA" gene 3442340..3443347 /gene="yhbW" /locus_tag="STM3276" /db_xref="GeneID:1254799" CDS 3442340..3443347 /gene="yhbW" /locus_tag="STM3276" /note="similar to E. coli putative enzyme (AAC76194.1); Blastp hit to AAC76194.1 (335 aa), 95% identity in aa 1 - 335" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462189.1" /db_xref="GI:16766574" /db_xref="GeneID:1254799" /translation="MTDKTIPFSVLDLAPIPEGSSAKEAFTHSLDLARLAEKRGYHRY WLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLY PGRIDLGLGRAPGSDQSTMRALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPG YGEQIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRTQFKPSARLEKP YAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIENMETFRSPSEQYGV QQALSMSLVGDKAKVRHGLESILRETQADEIMVNGQIFDHQARLHSFDLAMDVKEELL G" gene complement(3443325..3444050) /locus_tag="STM3277" /db_xref="GeneID:1254800" CDS complement(3443325..3444044) /locus_tag="STM3277" /note="similar to E. coli orf, hypothetical protein (AAC73328.1); Blastp hit to AAC73328.1 (246 aa), 51% identity in aa 30 - 224" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462190.1" /db_xref="GI:16766575" /db_xref="GeneID:1254800" /translation="MGRKGLLAIVLLSLFIAFILKFFWLTPYDEDVYLPVEKPVASSL KIIHPGDQLFIRILKAEDKLELWASANNKPYKLYKTWTICAWSGGLGPKHKQGDGKSP EGFYATNKGLLNPNSRYHLAFNIGYPNAYDRANGYTGDFIMVHGNCVSAGCYAMTDAG IEEIYQLVAQALNSGQKSVPVHIFPFTMNDENMRQAQAWPEYNFWRMLKPGYDYFEKN RRLPTITVENRRYKISPTTLP" regulatory complement(3444045..3444050) /regulatory_class="ribosome_binding_site" /locus_tag="STM3277" /note="putative RBS for STM3277; RegulonDB:STMS1H003302" gene 3444199..3444733 /locus_tag="STM3278" /db_xref="GeneID:1254801" regulatory 3444199..3444204 /regulatory_class="ribosome_binding_site" /locus_tag="STM3278" /note="putative RBS for STM3278; RegulonDB:STMS1H003303" CDS 3444203..3444733 /locus_tag="STM3278" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462191.1" /db_xref="GI:16766576" /db_xref="GeneID:1254801" /translation="MSEPASFFLHAHITESNLKKFFHSPATNIKDYDDWLPWFTEEQR LYGDPAKMLNNLATCNSGESEKNIYAEHINFNKETQIVTMDHIFLSESYEIFMPLMAC VRGIEKFITPGENNFALIYYYWWGSEIAIALEFDANGSRITANPKAENLTIADAFFDE HGEALAEELYNKQGFI" gene complement(3444794..3446123) /gene="mtr" /locus_tag="STM3279" /db_xref="GeneID:1254802" CDS complement(3444794..3446038) /gene="mtr" /locus_tag="STM3279" /note="similar to E. coli tryptophan-specific transport protein (AAC76195.1); Blastp hit to AAC76195.1 (414 aa), 94% identity in aa 1 - 414" /codon_start=1 /transl_table=11 /product="tryptophan permease" /protein_id="NP_462192.1" /db_xref="GI:16766577" /db_xref="GeneID:1254802" /translation="MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWS MAALVFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYIL TYAYISASGSILHHTFAEMSLNVPARAAGFAFALLVAFVVWLSTKAVSRMTAIVLGAK VITFFLTFGSLLGHVQPATLFNVAESHASYTPYLLMTLPFCLASFGYHGNVPSLMKYY GKDPRTIVKCLIYGTLLALALYSVWLLGTMGNIPRPEFIGIAQKGGNIDVLVQALSGV LNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRFKTALLTFLPPM IGGLLYPNGFLYAIGYAGLAATIWAAIVPALLARKSRERFGSPKFRVWGGKPMIVLIL LFGVGNALVHILSSFNLLPVYQ" regulatory complement(3446049..3446054) /regulatory_class="ribosome_binding_site" /gene="mtr" /locus_tag="STM3279" /note="putative RBS for mtr; RegulonDB:STMS1H003304" protein_bind complement(3446096..3446110) /gene="mtr" /locus_tag="STM3279" /note="putative binding site for TrpR, RegulonDB: STMS1H000375" /bound_moiety="TrpR" regulatory complement(3446096..3446104) /regulatory_class="minus_10_signal" /gene="mtr" /locus_tag="STM3279" /note="putative -10_signal for mtr; RegulonDB:STMLTH004584" regulatory complement(3446115..3446123) /regulatory_class="minus_35_signal" /gene="mtr" /locus_tag="STM3279" /note="putative -35_signal for mtr; RegulonDB:STMLTH004584" protein_bind complement(3446149..3446165) /note="putative binding site for TyrR, RegulonDB: STMS1H000383" /bound_moiety="TyrR" gene complement(3446192..3448132) /gene="deaD" /locus_tag="STM3280" /db_xref="GeneID:1254803" CDS complement(3446192..3448132) /gene="deaD" /locus_tag="STM3280" /note="similar to E. coli inducible ATP-independent RNA helicase (AAC76196.1); Blastp hit to AAC76196.1 (646 aa), 97% identity in aa 1 - 646" /codon_start=1 /transl_table=11 /product="cysteine sulfinate desulfinase" /protein_id="NP_462193.3" /db_xref="GI:1109557750" /db_xref="GeneID:1254803" /translation="MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALTDLGYE KPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPELKAPQILVLAPTRE LAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG TLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRF MKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATL EVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPN AELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELDLETLAAALLKMAQ GERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPRRERRDVGDMQLYRI EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTR ILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGGRGDGRRFSGE RRESRGPRRDDSTGRRRFGGDA" gene complement(3448260..3449151) /gene="nlpI" /locus_tag="STM3281" /db_xref="GeneID:1254804" CDS complement(3448260..3449144) /gene="nlpI" /locus_tag="STM3281" /note="similar to E. coli putative control proteins (AAC76197.1); Blastp hit to AAC76197.1 (294 aa), 96% identity in aa 1 - 294" /codon_start=1 /transl_table=11 /product="lipoprotein NlpI" /protein_id="NP_462194.1" /db_xref="GI:16766579" /db_xref="GeneID:1254804" /translation="MKPFLRWCFVATALTLAGCSNSAWRKSEVLAVPLQPTLQQEVIL ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD PNDPYRSLWLYLVEQKLNEKQAKEALKARFEKSDKEQWGWNIVEFYLGDISEATLMER LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALL ELSLLGQDQDDLAESDQQ" regulatory complement(3449146..3449151) /regulatory_class="ribosome_binding_site" /gene="nlpI" /locus_tag="STM3281" /note="putative RBS for nlpI; RegulonDB:STMS1H003305" gene complement(3449254..3451401) /gene="pnp" /locus_tag="STM3282" /db_xref="GeneID:1254805" CDS complement(3449254..3451389) /gene="pnp" /locus_tag="STM3282" /EC_number="2.7.7.8" /note="member of mRNA degradosome; similar to E. coli polynucleotide phosphorylase; cytidylate kinase activity (AAC76198.1); Blastp hit to AAC76198.1 (734 aa), 97% identity in aa 24 - 734" /codon_start=1 /transl_table=11 /product="polyribonucleotide nucleotidyltransferase" /protein_id="NP_462195.1" /db_xref="GI:16766580" /db_xref="GeneID:1254805" /translation="MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTV VGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPL FPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ YVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQA INDLVKEAGKPRWDWQPEAVNDALNARVAALAESRLSDAYRITDKQERYAQVDVIKSE TIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVL PRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGM VGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLAL MDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMD IKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIK DVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRI YNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ GRVRLSIKEATEQSQPAAAPEAPASEQAE" regulatory complement(3451396..3451401) /regulatory_class="ribosome_binding_site" /gene="pnp" /locus_tag="STM3282" /note="putative RBS for pnp; RegulonDB:STMS1H003306" gene complement(3451631..3451913) /gene="rpsO" /locus_tag="STM3283" /db_xref="GeneID:1254806" CDS complement(3451631..3451900) /gene="rpsO" /locus_tag="STM3283" /note="similar to E. coli 30S ribosomal subunit protein S15 (AAC76199.1); Blastp hit to AAC76199.1 (89 aa), 97% identity in aa 1 - 89" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S15" /protein_id="NP_462196.1" /db_xref="GI:16766581" /db_xref="GeneID:1254806" /translation="MSLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFA EHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR" regulatory complement(3451908..3451913) /regulatory_class="ribosome_binding_site" /gene="rpsO" /locus_tag="STM3283" /note="putative RBS for rpsO; RegulonDB:STMS1H003307" gene complement(3452051..3453006) /gene="truB" /locus_tag="STM3284" /db_xref="GeneID:1254807" CDS complement(3452051..3452995) /gene="truB" /locus_tag="STM3284" /EC_number="4.2.1.70" /note="similar to E. coli tRNA pseudouridine 5S synthase (AAC76200.1); Blastp hit to AAC76200.1 (314 aa), 93% identity in aa 1 - 314" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine(55) synthase TruB" /protein_id="NP_462197.1" /db_xref="GI:16766582" /db_xref="GeneID:1254807" /translation="MSRPRRRGRDIHGVLLLDKPQGMSSNDVLQKVKRIYNANRAGHT GALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVT FSAEQLASALETFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLF IRHEGNELELEVHCSKGTYIRTIIDDLGEKLGCGAHVTYLRRLTVSKYPVDRMVTLEH LQTLVAQAEQQGVPAAQLLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTTGAP LKGLVRVTEGEDDKFIGMGEIDDEGRVAPRRLVVEYPA" gene complement(3452995..3453410) /gene="rbfA" /locus_tag="STM3285" /db_xref="GeneID:1254808" CDS complement(3452995..3453396) /gene="rbfA" /locus_tag="STM3285" /note="role in processing of 10S rRNA; similar to E. coli ribosome-binding factor A (AAC76201.1); Blastp hit to AAC76201.1 (133 aa), 97% identity in aa 1 - 133" /codon_start=1 /transl_table=11 /product="ribosome-binding factor A" /protein_id="NP_462198.1" /db_xref="GI:16766583" /db_xref="GeneID:1254808" /translation="MAKEFGRPQRVAQEMQKEIAIILQREIKDPRLGMMTTVSGVEMS RDLAYAKVFVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNS LVEGMRMSNLVTNVVKHDEERRVNPDDSKED" regulatory complement(3453001..3453006) /regulatory_class="ribosome_binding_site" /gene="rbfA" /locus_tag="STM3285" /note="putative RBS for truB; RegulonDB:STMS1H003308" regulatory complement(3453405..3453410) /regulatory_class="ribosome_binding_site" /gene="rbfA" /locus_tag="STM3285" /note="putative RBS for rbfA; RegulonDB:STMS1H003309" gene complement(3453617..3456309) /gene="infB" /locus_tag="STM3286" /db_xref="GeneID:1254809" CDS complement(3453617..3456295) /gene="infB" /locus_tag="STM3286" /note="translation initiation factor IF-2. (SW:IF2_SALTY)" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-2" /protein_id="NP_462199.1" /db_xref="GI:16766584" /db_xref="GeneID:1254809" /translation="MTDVTLKALAAERQVSVDRLVQQFADAGIRKSADDSVSAQEKQT LLAHLNREAVSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAER LAAEEQAQREAEEQARREAEEQAKREAQQKAEREAAEQAKREAAEKAKREAAEKDKVS NQQTDDMTKTAQAEKARRENEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWT ATPEPVEDTSDYHVTTSQHARQAEDENDREVEGGRGRGRNAKAARPAKKGKHAESKAD REEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQV IKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPR APVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETDNGMITFLDTPGH AAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAGVPVVVAVNKIDKPEAD PDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGM ASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGP SIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFAN MTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAA SNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIG LAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNE VRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRTIA" regulatory complement(3456304..3456309) /regulatory_class="ribosome_binding_site" /gene="infB" /locus_tag="STM3286" /note="putative RBS for infB; RegulonDB:STMS1H003310" gene complement(3456320..3457839) /gene="nusA" /locus_tag="STM3287" /db_xref="GeneID:1254810" CDS complement(3456320..3457822) /gene="nusA" /locus_tag="STM3287" /note="transcription pausing; N utilization substance protein A (NUSA protein). (SW:NUSA_SALTY)" /codon_start=1 /transl_table=11 /product="transcription termination/antitermination protein NusA" /protein_id="NP_462200.1" /db_xref="GI:16766585" /db_xref="GeneID:1254810" /translation="MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEID VRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTF DRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMA GNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEV PEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERI DIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLAS QLSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYV PMKELLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMA FKLAARGVCTLEDLADQGIDDLADIEGLTDEKAGELIMAARNICWFGDEA" regulatory complement(3457834..3457839) /regulatory_class="ribosome_binding_site" /gene="nusA" /locus_tag="STM3287" /note="putative RBS for nusA; RegulonDB:STMS1H003311" gene complement(3457850..3458272) /gene="yhbC" /locus_tag="STM3288" /db_xref="GeneID:1254811" CDS complement(3457850..3458272) /gene="yhbC" /locus_tag="STM3288" /note="similar to E. coli orf, hypothetical protein (AAC76204.1); Blastp hit to AAC76204.1 (152 aa), 95% identity in aa 13 - 152" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462201.3" /db_xref="GI:1109557751" /db_xref="GeneID:1254811" /translation="MITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDGINVDDCADV SHQVSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRK WQGIIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF" gene complement(3458513..3458586) /gene="metY" /locus_tag="STM3289" /db_xref="GeneID:1254812" tRNA complement(3458513..3458586) /gene="metY" /locus_tag="STM3289" /product="tRNA-Met" /db_xref="GeneID:1254812" gene 3458864..3460273 /gene="argG" /locus_tag="STM3290" /db_xref="GeneID:1254813" CDS 3458864..3460273 /gene="argG" /locus_tag="STM3290" /EC_number="6.3.4.5" /note="similar to E. coli argininosuccinate synthetase (AAC76205.1); Blastp hit to AAC76205.1 (447 aa), 96% identity in aa 1 - 447" /codon_start=1 /transl_table=11 /product="argininosuccinate synthetase" /protein_id="NP_462202.3" /db_xref="GI:1109557752" /db_xref="GeneID:1254813" /translation="MHKNALKQKPISLSVNQAGFYSMTTILKHLPAGQRIGIAFSGGL DTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRKQLVAE GIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIE RFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSN MLGATHEAKDLEFLNSSVKIVNPIMGVKFWDESVKIPAEVVTVRFEQGHPVALNGKTF SDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIH NEDTIEQYHSHGRQLGKLLYQGRWFDSQALMLRDGLQRWVASQITGEVTLELRRGNDY SILNTVSDNLTYKAERLTMEKGESVFSPDDRIGQLTMRNLDITDTREKLFGYAKAGLL TASSATGLPQVENLENKGK" gene complement(3460359..3461430) /locus_tag="STM3291" /db_xref="GeneID:1254814" CDS complement(3460359..3461423) /locus_tag="STM3291" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462203.1" /db_xref="GI:16766588" /db_xref="GeneID:1254814" /translation="MSLFFDRAGLIAELRTSNLSSAIQEKVVQQARAAIAFKRCLRDM ETVKVGASRLGGLPDWPLGQSWPIRKKSVNATSRVLKLKAEKTRNARFVHEMKMSYEL LNEGRKLLGQPAEDFDEEKYRLVQQRLLTEIDIRIENQLVDFPLAFVAQLNLSDLALL PGFDPLLPRRGLLSFFVDVTWEDRQPFVFWHDVEVDTLSTLAVPDDLLAFYNKIEFRE PWQLCTQVECLEPLSVISVSSVCEGLSVTQQKAYESWYDALSDYEQDNPYRVDACYSG DLLGGWTIPLQRSVEDELNQNDTRWRQLFSWDEEIHSTTALLAVAGPDFGGGIDYIMM TEKDMAAQCFDRVRNVVQLD" regulatory complement(3461425..3461430) /regulatory_class="ribosome_binding_site" /locus_tag="STM3291" /note="putative RBS for STM3291; RegulonDB:STMS1H003312" gene complement(3461762..3461845) /gene="leuU" /locus_tag="STM3292" /db_xref="GeneID:1254815" tRNA complement(3461762..3461845) /gene="leuU" /locus_tag="STM3292" /product="tRNA-Leu" /db_xref="GeneID:1254815" gene complement(3461859..3462207) /gene="secG" /locus_tag="STM3293" /db_xref="GeneID:1254816" CDS complement(3461859..3462191) /gene="secG" /locus_tag="STM3293" /note="auxillary membrane component; similar to E. coli protein export - membrane protein (AAC76207.1); Blastp hit to AAC76207.1 (110 aa), 98% identity in aa 1 - 109" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit SecG" /protein_id="NP_462204.1" /db_xref="GI:16766589" /db_xref="GeneID:1254816" /translation="MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFG SSGSGNFMTRMTAVLATLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPA QPTSDIPR" regulatory complement(3462202..3462207) /regulatory_class="ribosome_binding_site" /gene="secG" /locus_tag="STM3293" /note="putative RBS for secG; RegulonDB:STMS1H003313" gene complement(3462414..3463767) /gene="mrsA" /locus_tag="STM3294" /db_xref="GeneID:1254817" CDS complement(3462414..3463751) /gene="mrsA" /locus_tag="STM3294" /note="similar to E. coli similar to phosphoglucomutases and phosphomannomutases (AAC76208.1); Blastp hit to AAC76208.1 (445 aa), 95% identity in aa 1 - 445" /codon_start=1 /transl_table=11 /product="phosphoglucosamine mutase" /protein_id="NP_462205.1" /db_xref="GI:16766590" /db_xref="GeneID:1254817" /translation="MSNRKYFGTDGIRGRVGNAPITPDFVLKLGWAAGKVLARHGSRK IIIGKDTRISGYMLESALEAGLAAAGLSASFTGPMPTPAVAYLTRTFRAEAGIVISAS HNPFYDNGIKFFSIDGTKLPDDVEEAIEAEMEKEITCVDSAELGKASRIVDAAGRYIE FCKGTFPNELSLNGLKVVVDCANGATYHIAPNVLRELGATVIAIGCEPNGVNINEEVG ATDVRALQARVLAEKADLGIALDGDGDRVIMVDHEGNKVDGDQIMYIIAREGLRQGQL RGGAVGTLMSNMGLELALKQLGIPFARAKVGDRYVLEKLQEKGWRIGAENSGHVILLD KTTTGDGIVAGLQVLAAMVRNHMSLHDLCSGMKMFPQILVNVRYTAGSGDPLENEAVK AVTADVEATLGNRGRVLLRKSGTEPLIRVMVEGEDEAQVTAFAHRIADAVKAV" gene complement(3463744..3464606) /gene="folP" /locus_tag="STM3295" /db_xref="GeneID:1254818" CDS complement(3463744..3464592) /gene="folP" /locus_tag="STM3295" /EC_number="2.5.1.15" /note="similar to E. coli 7,8-dihydropteroate synthase (AAC76209.1); Blastp hit to AAC76209.1 (297 aa), 91% identity in aa 16 - 297" /codon_start=1 /transl_table=11 /product="dihydropteroate synthase" /protein_id="NP_462206.1" /db_xref="GI:16766591" /db_xref="GeneID:1254818" /translation="MKLFAQGATLDLTHPHVMGILNVTPDSFSDGGAHNTLIEAVKHA NLMVNAGATIIDVGGESTRPGAAEVSVEEELDRVIPVLEAIAQRFEVWISVDTSKPEV IREAARAGAHIINDVRSLSEPGALEAAAETGLPVSLMHMQGNPKTMQEAPKYDDVFAE VNRYFIEQIARCEKAGIAKEKLLLDPGFGFGKNLSHNYTLLARLGEFHHFNLPLLVGM SRKTMVGQLLNVGPSDRLNGSLACAVIAAMQGAQIIRVHDVKETVEAMRVVEATLSAK GNKRYE" regulatory complement(3463762..3463767) /regulatory_class="ribosome_binding_site" /gene="folP" /locus_tag="STM3295" /note="putative RBS for mrsA; RegulonDB:STMS1H003314" regulatory complement(3464601..3464606) /regulatory_class="ribosome_binding_site" /gene="folP" /locus_tag="STM3295" /note="putative RBS for folP; RegulonDB:STMS1H003315" gene complement(3464697..3466631) /gene="hflB" /locus_tag="STM3296" /db_xref="GeneID:1254819" CDS complement(3464697..3466631) /gene="hflB" /locus_tag="STM3296" /EC_number="3.4.24.-" /note="similar to E. coli degrades sigma32, integral membrane peptidase, cell division protein (AAC76210.1); Blastp hit to AAC76210.1 (644 aa), 97% identity in aa 1 - 644" /codon_start=1 /transl_table=11 /product="ATP-dependent metalloprotease" /protein_id="NP_462207.1" /db_xref="GI:16766592" /db_xref="GeneID:1254819" /translation="MAKNLILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNQD QVREARINGREINVTKKDSNRYTTYIPINDPKLLDNLLTKNVKVVGEPPEEPSLLASI FISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEA KEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN QMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVH MRRVPLATDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI MMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLP EGDAISASRQKLESQISTLYGGRLAEEIIYGVEHVSTGASNDIKVATNLARNMVTQWG FSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQILTD NMDILHAMKDALMKYETIDAPQIDDLMARREVRPPAGWEDPNGTNNSDSNGTPQAPRP VDEPRTPNPGNTMSEQLGDK" gene complement(3466735..3467374) /gene="ftsJ" /locus_tag="STM3297" /db_xref="GeneID:1254820" CDS complement(3466735..3467361) /gene="ftsJ" /locus_tag="STM3297" /note="similar to E. coli cell division protein (AAC76211.1); Blastp hit to AAC76211.1 (209 aa), 100% identity in aa 1 - 208" /codon_start=1 /transl_table=11 /product="23S rRNA (uridine(2552)-2'-O)-methyltransferase" /protein_id="NP_462208.1" /db_xref="GI:16766593" /db_xref="GeneID:1254820" /translation="MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQ SDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGS FVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRK" regulatory complement(3467369..3467374) /regulatory_class="ribosome_binding_site" /gene="ftsJ" /locus_tag="STM3297" /note="putative RBS for ftsJ; RegulonDB:STMS1H003316" gene 3467431..3467781 /gene="yhbY" /locus_tag="STM3298" /db_xref="GeneID:1254821" regulatory 3467431..3467436 /regulatory_class="ribosome_binding_site" /gene="yhbY" /locus_tag="STM3298" /note="putative RBS for yhbY; RegulonDB:STMS1H003317" CDS 3467449..3467781 /gene="yhbY" /locus_tag="STM3298" /note="contains KH domain; similar to E. coli orf, hypothetical protein (AAC76212.1); Blastp hit to AAC76212.1 (97 aa), 95% identity in aa 1 - 97" /codon_start=1 /transl_table=11 /product="putative RNA-binding protein" /protein_id="NP_462209.3" /db_xref="GI:1109557753" /db_xref="GeneID:1254821" /translation="MTRFQSQRKQKYTMNLSTKQKQHLKGLAHPLKPVVMLGNNGLTE GVLAEIEQALEHHELIKVKIASEDRETKTLIVDAIVRETGACNVQVIGKTLVLYRPTK ERKISLPR" gene complement(3467937..3468425) /gene="greA" /locus_tag="STM3299" /db_xref="GeneID:1254822" CDS complement(3467937..3468413) /gene="greA" /locus_tag="STM3299" /note="cleaves 3' nucleotide of paused mRNA; similar to E. coli transcription elongation factor: cleaves 3' nucleotide of paused mRNA (AAC76213.1); Blastp hit to AAC76213.1 (153 aa), 96% identity in aa 1 - 153" /codon_start=1 /transl_table=11 /product="transcription elongation factor GreA" /protein_id="NP_462210.1" /db_xref="GI:16766595" /db_xref="GeneID:1254822" /translation="MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKE NAEYHAAREQQGFCEGRIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEE QTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL" regulatory complement(3468420..3468425) /regulatory_class="ribosome_binding_site" /gene="greA" /locus_tag="STM3299" /note="putative RBS for greA; RegulonDB:STMS1H003318" gene 3468641..3470094 /gene="dacB" /locus_tag="STM3300" /db_xref="GeneID:1254823" regulatory 3468641..3468646 /regulatory_class="ribosome_binding_site" /gene="dacB" /locus_tag="STM3300" /note="putative RBS for dacB; RegulonDB:STMS1H003319" CDS 3468661..3470094 /gene="dacB" /locus_tag="STM3300" /EC_number="3.4.16.4" /note="similar to E. coli D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin-binding protein 4 (AAC76214.1); Blastp hit to AAC76214.1 (477 aa), 93% identity in aa 1 - 477" /codon_start=1 /transl_table=11 /product="serine-type D-Ala-D-Ala carboxypeptidase" /protein_id="NP_462211.1" /db_xref="GI:16766596" /db_xref="GeneID:1254823" /translation="MRFSRFIIGLTTSIAFSVQAANIDEYIKQLPAGANLALMVQKIG APAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVDNGILKGDVI ARFGGDPTLKRQDIRNMVATLKKSGVTQIDGNVLIDTSIFASHDKAPGWPWNDLTQCF SAPPAAAIVDRNCFSVSLYSAQKPNDLAFIRVASYYPVTMFSQVRTLPRGSADAQYCE LDVVPGDLNRYTLTGCLPQRADPLPLAFAIQDGASYAGAILKQELKEAGITYRGTLLR QTQVNEPGTIVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHVRFNVPGTWRAGSD AVRQILRQQAGIDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPL AGYDGSLQYRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAV PPADQRNRRIPLVRFESRLYKDIYQNN" gene complement(3470226..3471410) /gene="yhbZ" /locus_tag="STM3301" /db_xref="GeneID:1254824" CDS complement(3470226..3471398) /gene="yhbZ" /locus_tag="STM3301" /note="similar to E. coli putative GTP-binding factor (AAC76215.1); Blastp hit to AAC76215.1 (390 aa), 95% identity in aa 1 - 390" /codon_start=1 /transl_table=11 /product="GTPase ObgE" /protein_id="NP_462212.1" /db_xref="GI:16766597" /db_xref="GeneID:1254824" /translation="MKFVDEASILVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGD VWMEADENLNTLIDYRFEKSFRAERGQNGASRDCTGKRGKDVTIKVPVGTRVIDQGTG ETMGDMTKHGQRLLVAKGGWHGLGNTRFKSSVNRTPRQKTNGTPGDKRDLLLELMLLA DVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDSEKSFVVADIPGLI EGAAEGAGLGIRFLKHLERCRVLLHLIDIDPIDGSDPVENARIIIGELEKYSQDLAAK PRWLVFNKIDLMDKTEAEEKAKAIAEALGWEGKYYLISAASQLGVKDLCWDVMTFIIE NPIAQAEEAKQPEKVEFMWDDYHRQQLAEVEEDADDDWDDDWDEDDEEGVEFIYKR" regulatory complement(3471405..3471410) /regulatory_class="ribosome_binding_site" /gene="yhbZ" /locus_tag="STM3301" /note="putative RBS for yhbZ; RegulonDB:STMS1H003320" gene complement(3471414..3472378) /gene="yhbE" /locus_tag="STM3302" /note="pseudogene; frameshift relative to E. coli b3184 (yhhE)" /pseudo /db_xref="GeneID:1254825" gene complement(3472508..3472781) /gene="rpmA" /locus_tag="STM3303" /db_xref="GeneID:1254826" CDS complement(3472508..3472765) /gene="rpmA" /locus_tag="STM3303" /note="similar to E. coli 50S ribosomal subunit protein L27 (AAC76217.1); Blastp hit to AAC76217.1 (85 aa), 95% identity in aa 1 - 85" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L27" /protein_id="NP_462213.1" /db_xref="GI:16766598" /db_xref="GeneID:1254826" /translation="MAHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTK FHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE" regulatory complement(3472776..3472781) /regulatory_class="ribosome_binding_site" /gene="rpmA" /locus_tag="STM3303" /note="putative RBS for rpmA; RegulonDB:STMS1H003322" gene complement(3472785..3473108) /gene="rplU" /locus_tag="STM3304" /db_xref="GeneID:1254827" CDS complement(3472785..3473096) /gene="rplU" /locus_tag="STM3304" /note="similar to E. coli 50S ribosomal subunit protein L21 (AAC76218.1); Blastp hit to AAC76218.1 (103 aa), 99% identity in aa 1 - 103" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L21" /protein_id="NP_462214.1" /db_xref="GI:16766599" /db_xref="GeneID:1254827" /translation="MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETIEFAEVLMIANG EEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGIS A" regulatory complement(3473103..3473108) /regulatory_class="ribosome_binding_site" /gene="rplU" /locus_tag="STM3304" /note="putative RBS for rplU; RegulonDB:STMS1H003323" gene 3473342..3474325 /gene="ispB" /locus_tag="STM3305" /db_xref="GeneID:1254828" regulatory 3473342..3473347 /regulatory_class="ribosome_binding_site" /gene="ispB" /locus_tag="STM3305" /note="putative RBS for ispB; RegulonDB:STMS1H003324" CDS 3473354..3474325 /gene="ispB" /locus_tag="STM3305" /EC_number="2.5.1.-" /note="similar to E. coli octaprenyl diphosphate synthase (AAC76219.1); Blastp hit to AAC76219.1 (323 aa), 95% identity in aa 1 - 323" /codon_start=1 /transl_table=11 /product="octaprenyl diphosphate synthase" /protein_id="NP_462215.1" /db_xref="GI:16766600" /db_xref="GeneID:1254828" /translation="MNLEKINELTAQDMAGVNATILEQLNSDVQLINQLGYYIISGGG KRIRPMIAVLAARAVGYQGNAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAA FGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITE ENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSA DGEHLGKNVGDDLNEGKPTLPLLHAMRHGTPEQSAMIRTAIEQGNGRHLLEPVLEAMT TCGSLEWTRQRAEEEADKAISALQILPDTPWREALIGLAHIAVQRDR" gene 3474541..3474844 /gene="nlp" /locus_tag="STM3306" /db_xref="GeneID:1254829" regulatory 3474541..3474546 /regulatory_class="ribosome_binding_site" /gene="nlp" /locus_tag="STM3306" /note="putative RBS for nlp; RegulonDB:STMS1H003325" CDS 3474557..3474844 /gene="nlp" /locus_tag="STM3306" /note="similar to Ner repressor protein of phage Mu; similar to E. coli regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu (AAC76220.1); Blastp hit to AAC76220.1 (92 aa), 86% identity in aa 1 - 92" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_462216.1" /db_xref="GI:16766601" /db_xref="GeneID:1254829" /translation="MESKLIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALTR PWPKGELIIAKALGTEPWVIWPSRYHDPRTHEFIDRTRLMRARNKNKQNVE" gene complement(3474902..3476173) /gene="murA" /locus_tag="STM3307" /db_xref="GeneID:1254830" CDS complement(3474902..3476161) /gene="murA" /locus_tag="STM3307" /EC_number="2.5.1.7" /note="similar to E. coli first step in murein biosynthesis;UDP-N-glucosamine 1-carboxyvinyltransferase (AAC76221.1); Blastp hit to AAC76221.1 (419 aa), 97% identity in aa 1 - 419" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine 1-carboxyvinyltransferase" /protein_id="NP_462217.1" /db_xref="GI:16766602" /db_xref="GeneID:1254830" /translation="MDKFRVQGPTTLQGEVTISGAKNAALPILFAALLAEEPVEIQNV PKLKDVDTSMKLLSQLGAKVERNGSVHIDASQVNVFCAPYDLVKTMRASIWALGPLVA RFGQGQVSLPGGCTIGARPVDLHITGLEQLGATIKLEEGYVKASVEGRLKGAHIVMDK VSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLVTLGAKIAGQGTDRITIEGV ERLGGGVYRVLPDRIETGTFLVAAAISRGKILCRNAQPDTLDAVLAKLRDAGADIEVG EDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMH VPELSRMGARAEIESNTVICHGVETLSGAQVMATDLRASASLVLAGCIAEGTTIVDRI YHIDRGYERIEDKLRALGANIERVKGE" regulatory complement(3476168..3476173) /regulatory_class="ribosome_binding_site" /gene="murA" /locus_tag="STM3307" /note="putative RBS for murA; RegulonDB:STMS1H003326" gene complement(3476215..3476508) /gene="yrbA" /locus_tag="STM3308" /db_xref="GeneID:1254831" CDS complement(3476215..3476508) /gene="yrbA" /locus_tag="STM3308" /note="similar to E. coli orf, hypothetical protein (AAC76222.1); Blastp hit to AAC76222.1 (89 aa), 95% identity in aa 3 - 89" /codon_start=1 /transl_table=11 /product="putative BolA family transcriptional regulator" /protein_id="NP_462218.1" /db_xref="GI:16766603" /db_xref="GeneID:1254831" /translation="MLGCFHYLTNKEPMENHEIQSVLMNALSLQEVHVSGDGSHFQVI AVGEMFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGF" gene complement(3476657..3476967) /gene="yrbB" /locus_tag="STM3309" /db_xref="GeneID:1254832" CDS complement(3476657..3476953) /gene="yrbB" /locus_tag="STM3309" /note="similar to E. coli orf, hypothetical protein (AAC76223.1); Blastp hit to AAC76223.1 (129 aa), 69% identity in aa 33 - 129" /codon_start=1 /transl_table=11 /product="phospholipid ABC transporter substrate-binding protein" /protein_id="NP_462219.1" /db_xref="GI:16766604" /db_xref="GeneID:1254832" /translation="MTPQLTWTREADTLVLAGELDQDVLAPLWDARVEAMNGVTRIDL SQISRVDTGGLALLAHLVNQAKKQGNAVSLSGVNDKVYALAQLYNLPEDVLPRM" gene complement(3476953..3477603) /gene="yrbC" /locus_tag="STM3310" /db_xref="GeneID:1254833" CDS complement(3476953..3477588) /gene="yrbC" /locus_tag="STM3310" /note="atp&memb; similar to E. coli orf, hypothetical protein (AAC76224.1); Blastp hit to AAC76224.1 (211 aa), 93% identity in aa 1 - 211" /codon_start=1 /transl_table=11 /product="phospholipid-binding protein MlaC" /protein_id="NP_462220.1" /db_xref="GI:16766605" /db_xref="GeneID:1254833" /translation="MFKRLMMVALLVIAPLSAATAADQSNPYKLMNEAAQKTFDRLKN EQPKIRANPDYLRDVVDQELLPYVQVKYAGALVLGRYYKEATPAQREAYFAAFREYLK QAYGQALAMYHGQTYQIAPEQPLGDATIVPIRVTIIDPNGRPPVRLDFQWRKNTQTGN WQAYDMIAEGVSMITTKQNEWSDLLRTKGIDGLTAQLKSISQQKITLDEKQ" regulatory complement(3476962..3476967) /regulatory_class="ribosome_binding_site" /gene="yrbB" /locus_tag="STM3309" /note="putative RBS for yrbB; RegulonDB:STMS1H003327" regulatory complement(3477598..3477603) /regulatory_class="ribosome_binding_site" /gene="yrbC" /locus_tag="STM3310" /note="putative RBS for yrbC; RegulonDB:STMS1H003328" gene complement(3477607..3478173) /gene="yrbD" /locus_tag="STM3311" /db_xref="GeneID:1254834" CDS complement(3477607..3478158) /gene="yrbD" /locus_tag="STM3311" /note="bind_prot; similar to E. coli orf, hypothetical protein (AAC76225.1); Blastp hit to AAC76225.1 (183 aa), 87% identity in aa 1 - 183" /codon_start=1 /transl_table=11 /product="outer membrane lipid asymmetry maintenance protein MlaD" /protein_id="NP_462221.1" /db_xref="GI:16766606" /db_xref="GeneID:1254834" /translation="MQTKKNEIWVGVFLLVALLAALFVCLKAANVTSMRTEPTYKVYA TFDNIGGLKVRSPVRIGGVVVGRVEDISLDPKTYLPRVTLDIEERYNHIPDTSSLSIR TSGLLGEQYLALNVGFEDPELGTSILKDGSTIQDTKSAMVLEDMIGQFLYNSKGDDNK NSGDAPAATEGHTEATTPAGETK" gene complement(3478163..3478963) /gene="yrbE" /locus_tag="STM3312" /db_xref="GeneID:1254835" CDS complement(3478163..3478945) /gene="yrbE" /locus_tag="STM3312" /note="membr; similar to E. coli orf, hypothetical protein (AAC76226.1); Blastp hit to AAC76226.1 (260 aa), 96% identity in aa 1 - 260" /codon_start=1 /transl_table=11 /product="ABC transporter permease" /protein_id="NP_462222.1" /db_xref="GI:16766607" /db_xref="GeneID:1254835" /translation="MLLNALAALGHSGIKTVRTFGRAGLMLFNAIIGKPEFRKHAPLL VRQLYNVGVLSMLIIIVSGVFIGMVLGLQGYLVLTTYSAETSLGMLVALSLLRELGPV VAALLFAGRAGSALTAEIGLMRATEQLSSMEMMAVDPLRRVISPRFWAGVISLPLLTI IFVAVGIWGGSLVGVSWKGIDAGFFWSAMQNAVDWRMDLVNCLIKSVVFAITVTWIAL FNGYDAIPTSAGISRATTRTVVHASLAVLGLDFVLTALMFGN" regulatory complement(3478168..3478173) /regulatory_class="ribosome_binding_site" /gene="yrbD" /locus_tag="STM3311" /note="putative RBS for yrbD; RegulonDB:STMS1H003329" gene complement(3478953..3479777) /gene="yrbF" /locus_tag="STM3313" /db_xref="GeneID:1254836" CDS complement(3478953..3479765) /gene="yrbF" /locus_tag="STM3313" /note="atp_bind; similar to E. coli putative ATP-binding component of a transport system (AAC76227.1); Blastp hit to AAC76227.1 (269 aa), 94% identity in aa 1 - 266" /codon_start=1 /transl_table=11 /product="phospholipid ABC transporter ATP-binding protein MlaF" /protein_id="NP_462223.1" /db_xref="GI:16766608" /db_xref="GeneID:1254836" /translation="MGQSAANLVDMRDVSFSRGERCIFDNISLTVPRGKITAIMGPSG IGKTTLLRLIGGQIPPDKGEILFDGENVPAMSRSRLYTVRKRMSMLFQSGALFTDMNV FDNVAYPLREHTNLPAPLLKSVVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAWIM ADKKIVAHGSAQALQENTDPRVRQFLDGIADGPVPFRYPAGDYHLDLLETGS" regulatory complement(3478958..3478963) /regulatory_class="ribosome_binding_site" /gene="yrbE" /locus_tag="STM3312" /note="putative RBS for yrbE; RegulonDB:STMS1H003330" regulatory complement(3479772..3479777) /regulatory_class="ribosome_binding_site" /gene="yrbF" /locus_tag="STM3313" /note="putative RBS for yrbF; RegulonDB:STMS1H003331" gene 3479967..3480955 /gene="yrbG" /locus_tag="STM3314" /db_xref="GeneID:1254837" regulatory 3479967..3479972 /regulatory_class="ribosome_binding_site" /gene="yrbG" /locus_tag="STM3314" /note="putative RBS for yrbG; RegulonDB:STMS1H003332" CDS 3479978..3480955 /gene="yrbG" /locus_tag="STM3314" /note="similar to E. coli orf, hypothetical protein (AAC76228.1); Blastp hit to AAC76228.1 (325 aa), 87% identity in aa 1 - 324" /codon_start=1 /transl_table=11 /product="calcium/sodium antiporter" /protein_id="NP_462224.1" /db_xref="GI:16766609" /db_xref="GeneID:1254837" /translation="MLLAMALLIIGLLLVAYGADRLVFAASILCRTFGIPPLIIGMTV VSIGTSLPEIIVSAAASLHGQLDLAVGAALGSNITNILLILGLAALVRPFTVHSDVLR RELPLMLFVSVVAGSVLHDGQLSRSDGIFLLLLAVLWLLFIVKIARLAERQGNDSLTR EQLAELPREGGLPVAFLWLGIALVIMPMATRMVIDNATVLANYFAMSELTLGLTVIAV GTSLPELATAIAGVRKGENDIAVGNLIGANIFNLAIVLGLPALIAPGEINPLAFGRDY SVMLLVSVVFALLCWRHPRQIGRGAGILLTGGFIVWLAMLYWLSPLLVG" gene 3480956..3481955 /gene="yrbH" /locus_tag="STM3315" /db_xref="GeneID:1254838" regulatory 3480956..3480961 /regulatory_class="ribosome_binding_site" /gene="yrbH" /locus_tag="STM3315" /note="putative RBS for yrbH; RegulonDB:STMS1H003333" CDS 3480969..3481955 /gene="yrbH" /locus_tag="STM3315" /note="similar to E. coli putative isomerase (AAC76229.1); Blastp hit to AAC76229.1 (328 aa), 92% identity in aa 1 - 328" /codon_start=1 /transl_table=11 /product="D-arabinose 5-phosphate isomerase" /protein_id="NP_462225.1" /db_xref="GI:16766610" /db_xref="GeneID:1254838" /translation="MSHLALQPGFDFQQAGKEVLEIEREGLAELDQYINQHFTLACEK MFNCTGKVVVMGMGKSGHIGRKMAATFASTGTSSFFVHPGEAAHGDLGMVTPQDVVIA ISNSGESSEIAALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVPKEACPLGLAP TSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPH VNKHATLRDALLEITRKNLGMTVICDESMKIDGIFTDGDLRRVFDMGGDMRQLGIAEV MTPGGIRVRPGILAVDALNLMQSRHITSVLVADGDQLLGVLHMHDLLRAGVV" gene 3481962..3482542 /gene="yrbI" /locus_tag="STM3316" /db_xref="GeneID:1254839" regulatory 3481962..3481967 /regulatory_class="ribosome_binding_site" /gene="yrbI" /locus_tag="STM3316" /note="putative RBS for yrbI; RegulonDB:STMS1H003334" CDS 3481976..3482542 /gene="yrbI" /locus_tag="STM3316" /note="CMP-Neu5Ac homolog; similar to E. coli orf, hypothetical protein (AAC76230.1); Blastp hit to AAC76230.1 (188 aa), 96% identity in aa 1 - 188" /codon_start=1 /transl_table=11 /product="3-deoxy-D-manno-octulosonate 8-phosphate phosphatase" /protein_id="NP_462226.1" /db_xref="GI:16766611" /db_xref="GeneID:1254839" /translation="MSKAGASLATCYGPVSPHVMTKAENIRLLILDVDGVLSDGLIYM GNNGEELKAFNVRDGYGIRCALTSNIEVAIITGRKAKLVEDRCATLGIVHLYQGQSNK LIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTHIA GGRGAVREVCDLLLLAQGKLDEAKGQSI" gene 3482519..3483114 /gene="yrbK" /locus_tag="STM3317" /db_xref="GeneID:1254840" regulatory 3482519..3482524 /regulatory_class="ribosome_binding_site" /gene="yrbI" /locus_tag="STM3316" /note="putative RBS for yrbK; RegulonDB:STMS1H003335" CDS 3482539..3483114 /gene="yrbK" /locus_tag="STM3317" /note="similar to E. coli orf, hypothetical protein (AAC76231.1); Blastp hit to AAC76231.1 (191 aa), 91% identity in aa 1 - 191" /codon_start=1 /transl_table=11 /product="LPS export ABC transporter periplasmic protein LptC" /protein_id="NP_462227.1" /db_xref="GI:16766612" /db_xref="GeneID:1254840" /translation="MSKTRRWVIILLSLAILVLIGINLADKDDPAAVMVNSNDPTYKS EHTDTVVYSPEGALSYRLIAQHVEYFSDQAVSWFTQPVLTTFDKDKVPTWSIKADKAK LTNDRMLYLYGHVEVNALVPDAQLRRITTDNAQINLVTQDVTSNDLVTLYGTTFNSSG LKMRGNLRSKNAELIEKVRTSYEIQNKQTQP" gene 3483067..3483637 /gene="yhbN" /locus_tag="STM3318" /db_xref="GeneID:1254841" regulatory 3483067..3483072 /regulatory_class="ribosome_binding_site" /gene="yhbN" /locus_tag="STM3318" /note="putative RBS for yhbN; RegulonDB:STMS1H003336" CDS 3483083..3483637 /gene="yhbN" /locus_tag="STM3318" /note="bind_prot; similar to E. coli orf, hypothetical protein (AAC76232.1); Blastp hit to AAC76232.1 (185 aa), 91% identity in aa 1 - 185" /codon_start=1 /transl_table=11 /product="LPS export ABC transporter substrate-binding protein LptA" /protein_id="NP_462228.1" /db_xref="GI:16766613" /db_xref="GeneID:1254841" /translation="MKFKTNKLSLNLMLAGSLLAASIPAFAVTGDTEQPIHIDSDQQS LDMQGNVVTFTGNVVMTQGTIKINADKVVVTRPGGEQGKEVIDGYGNPATFYQMQDNG KPVKGHASHMHYELAKDFVVLTGNAYLEQLDSNITGDKITYLVKEQKMQAFSEKGKRV TTVLVPSQLQDKNKGQTPAQKKSN" gene 3483644..3484369 /gene="yhbG" /locus_tag="STM3319" /db_xref="GeneID:1254842" CDS 3483644..3484369 /gene="yhbG" /locus_tag="STM3319" /note="atp_bind; similar to E. coli putative ATP-binding component of a transport system (AAC76233.1); Blastp hit to AAC76233.1 (241 aa), 98% identity in aa 1 - 241" /codon_start=1 /transl_table=11 /product="LPS export ABC transporter ATP-binding protein" /protein_id="NP_462229.1" /db_xref="GI:16766614" /db_xref="GeneID:1254842" /translation="MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTT TFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVFDNLMAV LQIRDDLTAEQREDRANELMEEFHIEHLRDSMGQALSGGERRRVEIARALAANPKFIL LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH GTPTEILQDEHVKRVYLGEDFRL" gene 3484314..3485850 /gene="rpoN" /locus_tag="STM3320" /db_xref="GeneID:1254843" regulatory 3484314..3484322 /regulatory_class="minus_35_signal" /gene="yhbG" /locus_tag="STM3319" /note="putative -35_signal for rpoN; RegulonDB:STMLTH004585" regulatory 3484341..3484349 /regulatory_class="minus_10_signal" /gene="yhbG" /locus_tag="STM3319" /note="putative -10_signal for rpoN; RegulonDB:STMLTH004585" regulatory 3484399..3484404 /regulatory_class="ribosome_binding_site" /gene="rpoN" /locus_tag="STM3320" /note="putative RBS for rpoN; RegulonDB:STMS1H003337" CDS 3484417..3485850 /gene="rpoN" /locus_tag="STM3320" /note="pleiotrophic functions including nitrogen metabolism, formate degradation, phage shock response; RNA polymerase SIGMA-54 factor. (SW:RP54_SALTY)" /codon_start=1 /transl_table=11 /product="RNA polymerase factor sigma-54" /protein_id="NP_462230.1" /db_xref="GI:16766615" /db_xref="GeneID:1254843" /translation="MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALENN PLLEQTDLHDEIDTQQPQDNDPLDTADALEQKEMPEELPLDASWDEIYTAGTPSGPSG DYIDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVSLDE IRESMGDVEVDLDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKSTPWLEEARL IICDHLDLLANHDFRTLMRVTRLKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDV LVRKHNGRWTVELNSDSIPRLQINQHYAAMCNSARNDADSQFIRSNLQDAKWLIKSLE SRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHS PRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQG IMVARRTVAKYRESLSIPPSNQRKQLV" gene 3485861..3486160 /gene="yhbH" /locus_tag="STM3321" /db_xref="GeneID:1254844" regulatory 3485861..3485866 /regulatory_class="ribosome_binding_site" /gene="yhbH" /locus_tag="STM3321" /note="putative RBS for yhbH; RegulonDB:STMS1H003338" CDS 3485873..3486160 /gene="yhbH" /locus_tag="STM3321" /note="probable SIGMA(54) modulation protein (ORF95). (SW:RP5M_SALTY)" /codon_start=1 /transl_table=11 /product="ribosomal subunit interface protein" /protein_id="NP_462231.1" /db_xref="GI:16766616" /db_xref="GeneID:1254844" /translation="MQLNITGHNVEITEALREFVTTKFAKLEQYFERINQVYVVLKVE KVTHISDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH" gene 3486259..3486769 /gene="ptsN" /locus_tag="STM3322" /db_xref="GeneID:1254845" regulatory 3486259..3486264 /regulatory_class="ribosome_binding_site" /gene="ptsN" /locus_tag="STM3322" /note="putative RBS for ptsN; RegulonDB:STMS1H003339" CDS 3486278..3486769 /gene="ptsN" /locus_tag="STM3322" /EC_number="2.7.1.191" /note="also regulates N metabolism; similar to E. coli phosphotransferase system enzyme IIA, regulates N metabolism (AAC76236.1); Blastp hit to AAC76236.1 (163 aa), 95% identity in aa 1 - 163" /codon_start=1 /transl_table=11 /product="PTS sugar transporter subunit IIA" /protein_id="NP_462232.1" /db_xref="GI:16766617" /db_xref="GeneID:1254845" /translation="MINNDTTLQLSSVLNQECTRSGVHCQSKKRALEIISELAAKQLS LPPQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAIDNQ PVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAALNDEELYQIITDTEGEQ NEA" gene 3486800..3487669 /gene="yhbJ" /locus_tag="STM3323" /db_xref="GeneID:1254846" regulatory 3486800..3486805 /regulatory_class="ribosome_binding_site" /gene="yhbJ" /locus_tag="STM3323" /note="putative RBS for yhbJ; RegulonDB:STMS1H003340" CDS 3486815..3487669 /gene="yhbJ" /locus_tag="STM3323" /note="similar to E. coli orf, hypothetical protein (AAC76237.1); Blastp hit to AAC76237.1 (284 aa), 98% identity in aa 1 - 283" /codon_start=1 /transl_table=11 /product="RNase adaptor RapZ" /protein_id="NP_462233.1" /db_xref="GI:16766618" /db_xref="GeneID:1254846" /translation="MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTL ADRQISAAVSIDVRNMPESPEIFEQAMNNLPGAFSPQLLFLDADRNTLIRRYSDTRRL HPLSSKNLSLESAIDKESDLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKREREL TMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNF IYQTRSYLELWLPMLETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRH RTLEKRKT" gene 3487649..3487938 /gene="ptsO" /locus_tag="STM3324" /db_xref="GeneID:1254847" regulatory 3487649..3487654 /regulatory_class="ribosome_binding_site" /gene="ptsO" /locus_tag="STM3324" /note="putative RBS for ptsO; RegulonDB:STMS1H003341" CDS 3487666..3487938 /gene="ptsO" /locus_tag="STM3324" /note="nitrogen related; exchanges phosphate with Enzyme I; similar to E. coli phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr (AAC76238.1); Blastp hit to AAC76238.1 (90 aa), 96% identity in aa 1 - 90" /codon_start=1 /transl_table=11 /product="HPr family phosphocarrier" /protein_id="NP_462234.1" /db_xref="GI:16766619" /db_xref="GeneID:1254847" /translation="MTVKQTVEVTNKLGMHARPAMKLFELMQGFDAEVLLRNDEGTEA EANSVIALLMLDSAKGRQIEIEATGPQEVEALAAVIALFNSGFDED" gene 3488176..3488819 /gene="yrbL" /locus_tag="STM3325" /db_xref="GeneID:1254848" regulatory 3488176..3488181 /regulatory_class="ribosome_binding_site" /gene="yrbL" /locus_tag="STM3325" /note="putative RBS for yrbL; RegulonDB:STMS1H003342" CDS 3488187..3488819 /gene="yrbL" /locus_tag="STM3325" /note="similar to E. coli orf, hypothetical protein (AAC76239.1); Blastp hit to AAC76239.1 (210 aa), 77% identity in aa 1 - 210" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462235.1" /db_xref="GI:16766620" /db_xref="GeneID:1254848" /translation="MILLSKQTPLGAGRHRKCYTHPDNARRCIKVIYNRDHGGDKEIR RELSYYAHLSRYLTDWSAIPRYYGTVETDCGTGYVYDMITDFNGAPSITLTEFAAQCR YEEDVAVLRRLLKKLKRYLLDNHIVTMSLKPQNILCQRISESEVVPVVCDNLGESTFI PLATWSTWCCERKLERVWQRFIAQPALAVALERDAQPKDKKRLALTSHEA" gene complement(3488894..3489630) /gene="mtgA" /locus_tag="STM3326" /db_xref="GeneID:1254849" CDS complement(3488894..3489622) /gene="mtgA" /locus_tag="STM3326" /EC_number="2.4.2.-" /note="biosynthetic; similar to E. coli putative peptidoglycan enzyme (AAC76240.1); Blastp hit to AAC76240.1 (242 aa), 83% identity in aa 1 - 242" /codon_start=1 /transl_table=11 /product="monofunctional biosynthetic peptidoglycan transglycosylase" /protein_id="NP_462236.1" /db_xref="GI:16766621" /db_xref="GeneID:1254849" /translation="MSKRRIAPLTFLRRLLLRILAALAVFWGGGIALFSVVPVPFSAV MAERQISAWLGGEFGYVAHSDWVSMADISPWMGLAVIAAEDQKFPEHWGFDVPAIEKA LAHNERNESRIRGASTLSQQTAKNLFLWDGRSWVRKGLEAGLTLGIETVWSKKRILTV YLNIAEFGDGIFGVEAAAQRYFHKPASRLSLSEAALLAAVLPNPIRYKANAPSGYVRS RQAWIMRQMRQLGGESFMTRNQLN" gene complement(3489619..3490288) /gene="yhbL" /locus_tag="STM3327" /db_xref="GeneID:1254850" CDS complement(3489619..3490272) /gene="yhbL" /locus_tag="STM3327" /note="similar to E. coli sigma cross-reacting protein 27A (SCRP-27A) (AAC76241.1); Blastp hit to AAC76241.1 (220 aa), 89% identity in aa 4 - 220" /codon_start=1 /transl_table=11 /product="glyoxalase ElbB" /protein_id="NP_462237.1" /db_xref="GI:16766622" /db_xref="GeneID:1254850" /translation="MKKIGVVLSGCGVYDGTEIHEAVLTLLAIARSGAQAVCFAPDKP QADVINHLTGEAMAETRNVLIEAARITRGDIRPLSQAQPEELDALIVPGGFGAAKNLS NFASQGSECRVDSDVVALAKAMHQSGKPLGFICIAPAMLPKIFDFPLRLTIGTDIDTA EVLEEMGAEHVPCPVDDIVVDEDNKVVTTPAYMLAQDIAQAASGIDKLVSRVLVLAE" regulatory complement(3489625..3489630) /regulatory_class="ribosome_binding_site" /gene="yhbL" /locus_tag="STM3327" /note="putative RBS for mtgA; RegulonDB:STMS1H003343" regulatory complement(3490283..3490288) /regulatory_class="ribosome_binding_site" /gene="yhbL" /locus_tag="STM3327" /note="putative RBS for yhbL; RegulonDB:STMS1H003344" gene complement(3490499..3492847) /gene="arcB" /locus_tag="STM3328" /db_xref="GeneID:1254851" CDS complement(3490499..3492835) /gene="arcB" /locus_tag="STM3328" /EC_number="2.7.3.-" /note="senses redox conditions; similar to E. coli aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcA (AAC76242.1); Blastp hit to AAC76242.1 (776 aa), 93% identity in aa 1 - 776" /codon_start=1 /transl_table=11 /product="two-component sensor histidine kinase ArcB" /protein_id="NP_462238.1" /db_xref="GI:16766623" /db_xref="GeneID:1254851" /translation="MKQIRMLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTM VLHGQVESIDVIRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRERDL KLNVQLKDNIAQLNQEIADREKAEAELQETFEQLKVEIKEREEAQIQLEQQSSFLRSF LDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLKPEDVYSPEAAEKVIETDEK VFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLMGFGRDITERKRYQDAL ERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNI FNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKV ITDGTRLRQILWNLISNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKI FAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPAV AEEVEDAFDEDDMPLPALHVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFV PGEYDLVLLDIQLPDMTGLDIARELTRRHTREDLPPLVALTANVLKDKKEYLDAGMDD VLSKPLSVPALTAMIKKFWDATDKEESTVTPEESDKAQALLDIPMLEQYIELVGPKLI TDGLAVFEKMMPGYLSVLESNLTARDKKGVVEEGHKIKGAAGSVGLRHLQQLGQQIQS PDLPAWEDNVVEWIEEMKQEWQHDVAVLKAWVANAEKK" regulatory complement(3492842..3492847) /regulatory_class="ribosome_binding_site" /gene="arcB" /locus_tag="STM3328" /note="putative RBS for arcB; RegulonDB:STMS1H003345" gene complement(3492929..3493876) /gene="yhcC" /locus_tag="STM3329" /db_xref="GeneID:1254852" CDS complement(3492929..3493858) /gene="yhcC" /locus_tag="STM3329" /note="similar to E. coli orf, hypothetical protein (AAC76243.1); Blastp hit to AAC76243.1 (309 aa), 94% identity in aa 1 - 307" /codon_start=1 /transl_table=11 /product="TIGR01212 family radical SAM protein" /protein_id="NP_462239.1" /db_xref="GI:16766624" /db_xref="GeneID:1254852" /translation="MQLQKLVNMFGGDLLRRYGQKVHKLTLHGGFSCPNRDGTIGRGG CTFCNVASFADEAQQHHSIAEQLAHQAHLVNRAKRYLAYFQAYTSTFAEVQVLRSMYQ QAVSQASIVGLCVGTRPDCVPQAVVDLLCEYKDQGYEVWLELGLQTAHDKTLRRINRG HDFACYQRTTRIARERGLKVCAHLIVGLPGEGQAECLQTMERVVETGVDGIKLHPLHI VKGSTMAKAWEAGRLNGIELDDYTLTAGEMIRHTPPEVIYHRISASARRPTLLAPLWC ENRWTGMVELDKYLNEHGVQGSALARPWIPPVA" regulatory complement(3493871..3493876) /regulatory_class="ribosome_binding_site" /gene="yhcC" /locus_tag="STM3329" /note="putative RBS for yhcC; RegulonDB:STMS1H003346" protein_bind 3494149..3494163 /note="putative binding site for Lrp, RegulonDB: STMS1H000259" /bound_moiety="Lrp" protein_bind 3494187..3494199 /note="putative binding site for Lrp, RegulonDB: STMS1H000261" /bound_moiety="Lrp" protein_bind 3494271..3494285 /note="putative binding site for Lrp, RegulonDB: STMS1H000258" /bound_moiety="Lrp" gene 3494517..3498990 /gene="gltB" /locus_tag="STM3330" /db_xref="GeneID:1254853" regulatory 3494517..3494522 /regulatory_class="ribosome_binding_site" /gene="gltB" /locus_tag="STM3330" /note="putative RBS for gltB; RegulonDB:STMS1H003347" CDS 3494530..3498990 /gene="gltB" /locus_tag="STM3330" /EC_number="1.4.1.13" /note="similar to E. coli glutamate synthase, large subunit (AAC76244.1); Blastp hit to AAC76244.1 (1517 aa), 95% identity in aa 32 - 1517" /codon_start=1 /transl_table=11 /product="glutamate synthase large subunit" /protein_id="NP_462240.1" /db_xref="GI:16766625" /db_xref="GeneID:1254853" /translation="MLYDKSLEKDNCGFGLIAHIEGEPSHKVVRTAIHALARMQHRGA ILADGKTGDGCGLLLQKPDRFFRIVAEERGWRLAKNYAVGMIFLNKDPELAAASRHIV EEELQQETLSIVGWRDVPTNEGVLGEIALSSLPRIEQIFVNAPAGWRPRDMERRLFIA RRRIEKRLQDDKDFYVCSLSNLVNIYKGLCMPADLPRFYLDLADLRLESAICLFHQRF STNTVPRWPLAQPFRYLAHNGEINTITGNRQWARARTYKFQTPLIPDLQSAAPFVNET GSDSSSLDNMLELLLAGGMDIIRAMRLLVPPAWQNNPDMDQDLRAFFDFNSMHMEPWD GPAGIVMSDGRFAACNLDRNGLRPARYVITKDKLITCASEVGIWDYQPDEVVEKGRVG PGELMVIDTRGGRILHSAETDDDLKSRHPYKEWMEKNVRRLVPFEELPDEEVGSRELD DDLLASYQKQFNYSAEELDSVIRVLGENGQEAVGSMGDDTPFAVLSSQPRIIYDYFRQ QFAQVTNPPIDPLREAHVMSLATSIGREMNVFCEAEGQAHRLSFKSPILLYSDFKQLT TMKEEHYRADRLDITFDVTETTLNATVKALCDKAEQMVRNGTVLLVLSDRNIGKNRLP VPAPMAVGAVQTRLVEQSLRCDANIIVETGSARDPHHFAVLLGFGATAIYPYLAYETL GRLIDTQAIAKNYRTVMQNYRNGINKGLYKIMSKMGISTIASYRCSKLFEAVGLHDDV VNLCFQGVVSRIGGASFDDFQQDLLNLSKRAWLARKPISPGGLLKYVHGGEYHAYNPD VVRTLQQAVQSGEYSDYQEYAKLVNERPASTLRDLLAIHPDGEAVTIDEVEPASELFK RFDTAAMSIGALSPEAHEALAEAMNSLGGNSNSGEGGEDPARYGTNKVSRIKQVASGR FGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSVPGVTLISPPPHH DIYSIEDLAQLIFDLKQVNPKAMISVKLVSEPGVGTIATGVAKAYADLITIAGYDGGT GASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKTGVDIIKAAILGAE SFGFGTGPMVALGCKYLRICHLNNCATGVATQDDKLRKNHYHGLPFKVTNYFEFIARE VRELMASLGVTRLVDLIGRTDLLKELEGFTAKQQKLALSRLLETAEPHPGKALYCTEN NPPFDNGVLNAQLLQQAKPFVDARQSKTFWFDIRNTDRSVGASLSGYIAQTHGDQGLA SDPIKAHFSGTAGQSFGVWNAGGVELYLTGDANDYVGKGMAGGLIAIRPPVGSAFLSH KASIIGNTCLYGATGGRLYAAGRAGERFGVRNSGAITVVEGIGDNGCEYMTGGIVCVL GKTGVNFGAGMTGGFAYVLDEDGEFRKRVNPELVEVLDVDSLAIHEEHLRGLITEHVQ HTGSQRGEEILSRWSSFSTQFALVKPKSSDVKALLGHRSRSAAELRVQAQ" gene 3498989..3500418 /gene="gltD" /locus_tag="STM3331" /db_xref="GeneID:1254854" regulatory 3498989..3498994 /regulatory_class="ribosome_binding_site" /gene="gltD" /locus_tag="STM3331" /note="putative RBS for gltD; RegulonDB:STMS1H003348" CDS 3499000..3500418 /gene="gltD" /locus_tag="STM3331" /EC_number="1.4.1.13" /note="similar to E. coli glutamate synthase, small subunit (AAC76245.1); Blastp hit to AAC76245.1 (472 aa), 95% identity in aa 1 - 472" /codon_start=1 /transl_table=11 /product="glutamate synthase small subunit" /protein_id="NP_462241.1" /db_xref="GI:16766626" /db_xref="GeneID:1254854" /translation="MSQNVYQFIDLQRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQA DRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDR LCEGSCTLHDEFGAVTIGNIERYINDKAFEMGWRPDITGVRQTDKRVAIIGAGPAGLA CADVLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTE VGRDVQLEDLLKDYDAVFLGVGTYQSMRGGLENEDADGVFDALPFLIANTKQIMGFGE TSDEPYVSMEGKRVVVLGGGDTAMDCVRTSIRQGATHVTCAYRRDEENMPGSRREVKN AREEGVEFQFNVQPLGIEVNANGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHVVPA DAVVMAFGFRPHSMEWLAKHSVELDSQGRIIAPERSDNAFQTSNPKIFAGGDIVRGSD LVVTAIAEGRKAADGIMNYLEV" gene 3500615..3501728 /gene="yhcG" /locus_tag="STM3332" /db_xref="GeneID:1254855" regulatory 3500615..3500620 /regulatory_class="ribosome_binding_site" /gene="yhcG" /locus_tag="STM3332" /note="putative RBS for yhcG; RegulonDB:STMS1H003349" CDS 3500625..3501728 /gene="yhcG" /locus_tag="STM3332" /note="similar to E. coli orf, hypothetical protein (AAC76252.1); Blastp hit to AAC76252.1 (375 aa), 55% identity in aa 115 - 164" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462242.1" /db_xref="GI:16766627" /db_xref="GeneID:1254855" /translation="MTNPTLAPQSDEYQQIHNGIVQLLDTARTQTVRSINTIMTATYW EMGRRIVEFEQGGEARAAYGEQLIDRLSQDLSQRYKRGFSASNLWQFKKFYLYFQKIE ILQTVSGESLHLAQLAKSFPLPWSAYVRLLSVKNPNARTFYEKETLRNGWSVRQLDRQ IATQFYERTLLSHDKSAMLQQPAPAEPNVLPEQAIRDPFILEFLNLKDEYSESDLEDA LLSHLMDFMLELGDDFAFVGRQRRLRIDDSWFRVDLLFFHRRLRCLLLVDLKVGKFGY ADAGQMNMYLNYAKEHWTMPGENPPVGLVLCAGKGAGEAHYALTGLPNTIMASEYKVQ LPDEKLLTDELIRSQTMLETQLTRGGSLTTEKN" gene 3501797..3503098 /locus_tag="STM3333" /db_xref="GeneID:1254856" regulatory 3501797..3501805 /regulatory_class="minus_35_signal" /locus_tag="STM3333" /note="putative -35_signal for STM3333; RegulonDB:STMLTH004586" regulatory 3501824..3501832 /regulatory_class="minus_10_signal" /locus_tag="STM3333" /note="putative -10_signal for STM3333; RegulonDB:STMLTH004586" regulatory 3501837..3501842 /regulatory_class="ribosome_binding_site" /locus_tag="STM3333" /note="putative RBS for STM3333; RegulonDB:STMS1H003350" CDS 3501845..3503098 /locus_tag="STM3333" /note="similar to E. coli cytosine permease/transport (AAC73439.1); Blastp hit to AAC73439.1 (419 aa), 82% identity in aa 1 - 414" /codon_start=1 /transl_table=11 /product="cytosine permease" /protein_id="NP_462243.1" /db_xref="GI:16766628" /db_xref="GeneID:1254856" /translation="MSQDNNYSQGPVPLAARKGVIPLTFVMLGLTFFSASMWTGGTLG TGLSYNDFFLAVLFGNLLLGIYTAFLGYIGAKTGLSTHLLARYSFGVKGSWLPSLLLG GTQVGWFGVGVAMFAIPVSKATGIDANILIAVSGLLMTLTIFFGISALTILSIVAVPA IVILGSYSVWLAVSGVGGLEHLKTIVPQTPLDFSSALALVVGSFVSAGTLTADFVRFG RHAKSAVLIAMVAFFLGNSLMFIFGAAGAAAVGQADISDVMIAQGLLLPAIVVLGLNI WTTNDNALYASGLGFANITGLSSRTLSVVNGIIGTVCALWLYNNFVGWLTFLSSAIPP IGGVIIADYLLNRRRYADFNTVRFIPVNWIAILSVALGIAAGHYVPGIVPVNAVLGGV FSYILLNPLFNRSLAKSPEVSHAEQ" gene 3503075..3504365 /locus_tag="STM3334" /db_xref="GeneID:1254857" regulatory 3503075..3503080 /regulatory_class="ribosome_binding_site" /locus_tag="STM3334" /note="putative RBS for STM3334; RegulonDB:STMS1H003351" CDS 3503085..3504365 /locus_tag="STM3334" /EC_number="3.5.4.1" /note="similar to E. coli cytosine deaminase (AAC73440.1); Blastp hit to AAC73440.1 (427 aa), 83% identity in aa 1 - 427" /codon_start=1 /transl_table=11 /product="putative cytosine deaminase" /protein_id="NP_462244.1" /db_xref="GI:16766629" /db_xref="GeneID:1254857" /translation="MQNNNITIRQTRLQGHEGLWQITIENGRFSRIEPQEAASLPQGE VLDAEGGLAIPPFVEPHIHLDTTQTAGEPSWNQSGTLFEGIERWAERKAMLTHEDVKA RAMQTLKWQMANGIQYVRTHVDVSDPTLTALKAMLEVKQEVAPWVDLQIVAFPQEGVL SYPNGEALLEEAVRLGADVIGAIPHFEFTREYGVESLHKIFALAQKYDRLIDVHCDEI DDEQSRFVETVAALAHRDSMGARVTASHTTAMHSYNGAYASRLFRLLKMSGINFVANP LVNIHLQGRFDTYPKRRGVTRVKEMLEAGINVCFGHDDVFDPWYPLGTANMLQVLHMG LHVCQLMGYGQINDGLNLITIHSAKTLHLQDYGLSVGNAANLVILPAENGFDAVRRQT PARYSIRHGRVIAETVPSQTTLHLTQPEAVTFKR" gene complement(3504448..3504928) /gene="yhcH" /locus_tag="STM3335" /db_xref="GeneID:1254858" CDS complement(3504448..3504915) /gene="yhcH" /locus_tag="STM3335" /note="similar to E. coli orf, hypothetical protein (AAC76253.1); Blastp hit to AAC76253.1 (154 aa), 80% identity in aa 1 - 154" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462245.1" /db_xref="GI:16766630" /db_xref="GeneID:1254858" /translation="MMMGEVQSLPSCGLHPRLLDALTLALAARPQEKAPGRYELQGDN VFMNVMQLTTQMPAEKKAELHEQYIDIQLLLTGVERIAFGMSGAARQCEEMHVEEDYQ LCSQIVDEQTITLQAGMFAVFMPGEPHKPGCAVGEPDDIKKVVVKVRASLLAA" gene complement(3504912..3505798) /gene="nanK" /locus_tag="STM3336" /db_xref="GeneID:1254859" CDS complement(3504912..3505787) /gene="nanK" /locus_tag="STM3336" /note="similar to E. coli putative NAGC-like transcriptional regulator (AAC76254.1); Blastp hit to AAC76254.1 (302 aa), 75% identity in aa 12 - 302" /codon_start=1 /transl_table=11 /product="N-acetylmannosamine kinase" /protein_id="NP_462246.1" /db_xref="GI:16766631" /db_xref="GeneID:1254859" /translation="MTTLAIDIGGTKLAAALIDNNLRISQRRELPTPASKTPDALREA LKALVEPLRAEARQVAIASTGIIQEGMLLALNPHNLGGLLHFPLVQTLEAIAGLPTLA VNDAQAAAWAEYHALPDDIRDMVFITVSTGVGGGVVCDGKLLTGKGGLAGHLGHTLAD PHGPVCGCGRVGCVEAIASGRGMAAAARDDLAGCDAKTLFIRAGEGHQQARHLVSQSA QVIARMIADVKATTDCQCVVIGGSVGLAEGYLEQVRAFLMQEPAPYHVALSAARYRHD AGLLGAALLAQGDTL" regulatory complement(3504923..3504928) /regulatory_class="ribosome_binding_site" /gene="yhcH" /locus_tag="STM3335" /note="putative RBS for yhcH; RegulonDB:STMS1H003352" gene complement(3505784..3506484) /gene="nanE" /locus_tag="STM3337" /db_xref="GeneID:1254860" CDS complement(3505784..3506473) /gene="nanE" /locus_tag="STM3337" /note="similar to E. coli putative enzyme (AAC76255.1); Blastp hit to AAC76255.1 (229 aa), 80% identity in aa 1 - 227" /codon_start=1 /transl_table=11 /product="N-acetylmannosamine-6-phosphate 2-epimerase" /protein_id="NP_462247.1" /db_xref="GI:16766632" /db_xref="GeneID:1254860" /translation="MSLLEQLDKNIAASGGLIVSCQPVPGSPLDKPEIVAAMALAAEQ AGAVAVRIEGIDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAII AVDGTARQRPVAVEALLARIHHHHLLAMADCSSVDDGLACQRLGADIIGTTMSGYTTP DTPEEPDLPLVKALHDAGCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITRLEHICG WYNDALKKAAS" regulatory complement(3505793..3505798) /regulatory_class="ribosome_binding_site" /gene="nanE" /locus_tag="STM3337" /note="putative RBS for nanK; RegulonDB:STMS1H003353" regulatory complement(3506479..3506484) /regulatory_class="ribosome_binding_site" /gene="nanE" /locus_tag="STM3337" /note="putative RBS for nanE; RegulonDB:STMS1H003354" gene complement(3506520..3508010) /gene="nanT" /locus_tag="STM3338" /db_xref="GeneID:1254861" CDS complement(3506520..3508010) /gene="nanT" /locus_tag="STM3338" /note="similar to E. coli sialic acid transporter (AAC76256.1); Blastp hit to AAC76256.1 (506 aa), 94% identity in aa 11 - 506" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_462248.1" /db_xref="GI:16766633" /db_xref="GeneID:1254861" /translation="MSTSTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLT EVQSEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVSSIILFSVGTLAC GFAPGYTTMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVA AQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILY RGEHRIINILMTFAAAAALWFCFAGNLQNAAIVAGLGLLCAVIFISFMVQSSGKRWPT GVMLMLVVLFAFLYSWPIQALLPTYLKTELAYDPHTVANVLFFSGFGAAVGCCVGGFL GDWLGTRKAYVCSLLASQILIIPVFAIGGTNVWVLGLLLFFQQMLGQGIAGILPKLIG GYFDTDQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVILLI GLDMPSRVQRWLRPEALRTHDAIDDKPFSGAVPLGSGKGAFVKTKS" gene complement(3508126..3509028) /gene="nanA" /locus_tag="STM3339" /db_xref="GeneID:1254862" CDS complement(3508126..3509019) /gene="nanA" /locus_tag="STM3339" /EC_number="4.1.3.3" /note="aldolase; similar to E. coli N-acetylneuraminate lyase (aldolase); catabolism of sialic acid; not K12? (AAC76257.1); Blastp hit to AAC76257.1 (297 aa), 90% identity in aa 1 - 296" /codon_start=1 /transl_table=11 /product="N-acetylneuraminate lyase" /protein_id="NP_462249.1" /db_xref="GI:16766634" /db_xref="GeneID:1254862" /translation="MAKALQGVMAALLTPFDHQQQLDSESLRRLVRFNIGQGIDGLYV GGSTGEAFVQSLAEREQVLEIVAEEAKGKITLIAHVGTVSTAESQQLASAAKRYGFDA VSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPG VSALKQTSGDLFQMEQIRRAHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQ GIVQALREGDVAKAQRLQTECNKVIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFAP VDEKYLPALKALAQQLMEEKA" regulatory complement(3509023..3509028) /regulatory_class="ribosome_binding_site" /gene="nanA" /locus_tag="STM3339" /note="putative RBS for nanA; RegulonDB:STMS1H003355" gene complement(3509154..3509945) /gene="yhcK" /locus_tag="STM3340" /db_xref="GeneID:1254863" CDS complement(3509154..3509945) /gene="yhcK" /locus_tag="STM3340" /note="similar to E. coli putative FADA-type transcriptional regulator (AAC76258.1); Blastp hit to AAC76258.1 (263 aa), 87% identity in aa 1 - 263" /codon_start=1 /transl_table=11 /product="transcriptional regulator NanR" /protein_id="NP_462250.1" /db_xref="GI:16766635" /db_xref="GeneID:1254863" /translation="MDVMNAFDSQAEDSPTSLGRSLRRRPLARKKLSEMVEEELEQMI RRHEFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSADT IISELSGMAKDFLTHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIALLTKALEINSQ SLDDNALFIRSDVEFHRVLAEIPGNPIFMAIHVALLDWLIAARPSVPDRELHEHNNVS YQQHIVIVDAIRQRDPDKADRALQTHLNSVSATWHALGKKSQKMR" gene complement(3510054..3510569) /gene="sspB" /locus_tag="STM3341" /db_xref="GeneID:1254864" CDS complement(3510054..3510554) /gene="sspB" /locus_tag="STM3341" /note="similar to E. coli stringent starvation protein B (AAC76260.1); Blastp hit to AAC76260.1 (165 aa), 89% identity in aa 1 - 165" /codon_start=1 /transl_table=11 /product="stringent starvation protein B" /protein_id="NP_462251.1" /db_xref="GI:16766636" /db_xref="GeneID:1254864" /translation="MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVMLPGVHVPME YARDGQIVLNIAPRAVGNLELSNDEVRFNARFGGVPRQVSVPLAAVLAIYARENGAGT MFEPEAAYDEDVVSLNDDDNTAGAESETVMSVIDGDKPDHDDDSSPDDEPPPPRGGRP ALRVVK" gene complement(3510560..3511210) /gene="sspA" /locus_tag="STM3342" /db_xref="GeneID:1254865" CDS complement(3510560..3511198) /gene="sspA" /locus_tag="STM3342" /note="regulator of transcription; similar to E. coli regulator of transcription; stringent starvation protein A (AAC76261.1); Blastp hit to AAC76261.1 (212 aa), 98% identity in aa 1 - 211" /codon_start=1 /transl_table=11 /product="stringent starvation protein A" /protein_id="NP_462252.1" /db_xref="GI:16766637" /db_xref="GeneID:1254865" /translation="MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSFEIEHVEKD NPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARGESRLY MHRIEKDWYTLMNVIVNGSASEADSARKQLREELLAIAPVFGQKPYFLSDEFSLVDCY LAPLLWRLPQLGIEFSGAGAKELKGYMTRVFERDSFLASLTEAEREMRLGRG" regulatory complement(3510564..3510569) /regulatory_class="ribosome_binding_site" /gene="sspB" /locus_tag="STM3341" /note="putative RBS for sspB; RegulonDB:STMS1H003356" regulatory complement(3511205..3511210) /regulatory_class="ribosome_binding_site" /gene="sspA" /locus_tag="STM3342" /note="putative RBS for sspA; RegulonDB:STMS1H003357" gene complement(3511461..3512217) /locus_tag="STM3343" /db_xref="GeneID:1254866" CDS complement(3511461..3512213) /locus_tag="STM3343" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462253.1" /db_xref="GI:16766638" /db_xref="GeneID:1254866" /translation="MLSNKWEFFITTVDDHVTGIRVDIGAIQDEKFDRLIHTGFLRVH YTNCYENGLPQPDETQSLNRIEDWLDEKGKTFPIWLVGVVTQQGWRDFVFMSEEDLNW EKTLDKLLAGGPEISFSYRESHNDKGNFYRQFLYPTRYDWNWIHDSRVCRGLQEQGDD LTLPRAIDYYATLPTEVAARDLAQDIAALPYGITLVSIRMNDPQQGFMASFISTDAPQ QWHMTEITCQLTDLAEKHGGSFDGWGAPVVQA" regulatory complement(3512212..3512217) /regulatory_class="ribosome_binding_site" /locus_tag="STM3343" /note="putative RBS for STM3343; RegulonDB:STMS1H003358" gene complement(3512413..3512811) /gene="rpsI" /locus_tag="STM3344" /db_xref="GeneID:1254867" CDS complement(3512413..3512805) /gene="rpsI" /locus_tag="STM3344" /note="similar to E. coli 30S ribosomal subunit protein S9 (AAC76262.1); Blastp hit to AAC76262.1 (130 aa), 99% identity in aa 1 - 130" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S9" /protein_id="NP_462254.1" /db_xref="GI:16766639" /db_xref="GeneID:1254867" /translation="MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETA RMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRGELRKAG FVTRDARQVERKKVGLRKARRRPQFSKR" regulatory complement(3512806..3512811) /regulatory_class="ribosome_binding_site" /gene="rpsI" /locus_tag="STM3344" /note="putative RBS for rpsI; RegulonDB:STMS1H003359" gene complement(3512821..3513264) /gene="rplM" /locus_tag="STM3345" /db_xref="GeneID:1254868" CDS complement(3512821..3513249) /gene="rplM" /locus_tag="STM3345" /note="similar to E. coli 50S ribosomal subunit protein L13 (AAC76263.1); Blastp hit to AAC76263.1 (142 aa), 100% identity in aa 1 - 142" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L13" /protein_id="NP_462255.1" /db_xref="GI:16766640" /db_xref="GeneID:1254868" /translation="MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEY TPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIE IAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI" regulatory complement(3513259..3513264) /regulatory_class="ribosome_binding_site" /gene="rplM" /locus_tag="STM3345" /note="putative RBS for rplM; RegulonDB:STMS1H003360" gene complement(3513552..3514695) /gene="yhcM" /locus_tag="STM3346" /db_xref="GeneID:1254869" CDS complement(3513552..3514676) /gene="yhcM" /locus_tag="STM3346" /note="similar to E. coli orf, hypothetical protein (AAC76264.1); Blastp hit to AAC76264.1 (375 aa), 85% identity in aa 1 - 373" /codon_start=1 /transl_table=11 /product="cell division protein ZapE" /protein_id="NP_462256.1" /db_xref="GI:16766641" /db_xref="GeneID:1254869" /translation="MQSLSPTSRYLQALNEGTHQPDDVQKEAVDRLETLYQALTAKKS SATPPGGLIARLGKLLGKNEPDAQIPVRGLYMWGGVGRGKTWLMDLFYHSLPGERKLR LHFHRFMLRVHEELTALQGQIDPLDIIADRFKTETDVLCFDEFFVTDITDAMLLGGLM KALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDIMNVDAGVDYRLRTL TQAHLWLTPLNDETRRQMDKLWLALAGAAREHAPTLEINHRSLSTLGVENQTLAVSFA TLCVEARSQHDYIALSRLFHTVLLFDVPVMTPLMENEARRFIALVDEFYERHVKLVVS AAAPLYEIYQGERLKFEFQRCLSRLQEMQSAEYLKREHMP" regulatory complement(3514690..3514695) /regulatory_class="ribosome_binding_site" /gene="yhcM" /locus_tag="STM3346" /note="putative RBS for yhcM; RegulonDB:STMS1H003361" gene 3514856..3515267 /gene="yhcB" /locus_tag="STM3347" /db_xref="GeneID:1254870" regulatory 3514856..3514861 /regulatory_class="ribosome_binding_site" /gene="yhcB" /locus_tag="STM3347" /note="putative RBS for yhcB; RegulonDB:STMS1H003362" CDS 3514863..3515267 /gene="yhcB" /locus_tag="STM3347" /note="similar to E. coli orf, hypothetical protein (AAC76265.1); Blastp hit to AAC76265.1 (134 aa), 97% identity in aa 1 - 134" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_462257.1" /db_xref="GI:16766642" /db_xref="GeneID:1254870" /translation="MFMTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNK AELEEYREELVSHFARSAELLDTMAHDYRQLYQHMAKSSSSLLPEMSAESNPFRNRLA ESEASNDQAPVQMPRDYSEGASGLLRSGAKRD" gene 3515404..3516791 /gene="degQ" /locus_tag="STM3348" /db_xref="GeneID:1254871" regulatory 3515404..3515409 /regulatory_class="ribosome_binding_site" /gene="degQ" /locus_tag="STM3348" /note="putative RBS for degQ; RegulonDB:STMS1H003363" CDS 3515424..3516791 /gene="degQ" /locus_tag="STM3348" /EC_number="3.4.21.-" /note="similar to E. coli serine endoprotease (AAC76266.1); Blastp hit to AAC76266.1 (455 aa), 89% identity in aa 1 - 455" /codon_start=1 /transl_table=11 /product="serine endoprotease DegQ" /protein_id="NP_462258.1" /db_xref="GI:16766643" /db_xref="GeneID:1254871" /translation="MKKHTQLLSALALSVGLTLSAPFPALASIPGQVPGQATLPSLAP MLEKVLPAVVSVKVEGTAAQSQKVPEEFKKFFGEDLPDQPSQPFEGLGSGVIIDAAKG YVLTNNHVINQAQKISIQLNDGREFDAKQIGGDDQSDIALLQIQNPSKLTQIAIADSD KLRVGDFAVAVGNPFGLGQTATSGIISALGRSGLNLEGLENFIQTDASINRGNSGGAL LNLNGELIGINTAILAPGGGSIGIGFAIPSNMAQTLAQQLIQFGEIKRGLLGIKGTEM TADIAKAFKLNVQRGAFVSEVLPNSGSAKAGVKSGDVIISLNGKQLNSFAELRSRIAT TEPGTKVKLGLLRDGKPLEVEVTLDSNTSSSASAEMIAPALQGATLSDGQLKDGTKGV KVDSVEKSSPAAQAGLQKDDVIIGVNRDRISSIAEMRKVMAAKPSIIALQVVRGNENI YLLLR" gene 3516884..3517954 /gene="degS" /locus_tag="STM3349" /db_xref="GeneID:1254872" CDS 3516884..3517954 /gene="degS" /locus_tag="STM3349" /EC_number="3.4.21.-" /note="similar to E. coli protease (AAC76267.1); Blastp hit to AAC76267.1 (355 aa), 91% identity in aa 1 - 355" /codon_start=1 /transl_table=11 /product="stress sensor serine endopeptidase DegS" /protein_id="NP_462259.1" /db_xref="GI:16766644" /db_xref="GeneID:1254872" /translation="MFVKLLRSVAIGLIVGAILLAVMPSLRKINPIAVPQFDSTDETP ASYNFAVRRAAPAVVNVYNRSMNSTAHNQLEIRTLGSGVIMDQRGYIITNKHVINDAD QIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINTKRTPHIGDVVLAIGN PYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTL SFDKSNDGETPEGLGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQQGSG MDPIQGIVVNEVTPNGPAALAGIQVNDLIISVNNKPAVSALETMDQVAEIRPGSVIPV VVMRDDKQLTFQVTVQEYPASN" gene complement(3517988..3518719) /locus_tag="STM3350" /db_xref="GeneID:1254873" CDS complement(3517988..3518719) /locus_tag="STM3350" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462260.1" /db_xref="GI:16766645" /db_xref="GeneID:1254873" /translation="MILFPQNEDTVMSEMVAFRQGTSMPSRETILHYVVETVNQITEL EPALHLLPWSGVNSAIYEQRFAQCYDEGLCAAQTSAPNVPQGILPSTDWAQGIGLLCF AAGYMSAGERPLTHNQLCDFVKQAAVGLSPIEGEAASGFSTVRSIALPVFRRLQRDGH ASRVLLLQTLLHLVAWKSASQYARQQAQRLLWMGGILGEGGEHSLLVLDKALREEAVG EKSLPALLIFTSFLAHFPAGPVFID" gene complement(3518739..3520046) /gene="oadB" /locus_tag="STM3351" /db_xref="GeneID:1254874" CDS complement(3518739..3520040) /gene="oadB" /locus_tag="STM3351" /EC_number="4.1.1.3" /note="putative sodium ion pump; oxaloacetate decarboxylase beta chain. (SW:DCOB_SALTY)" /codon_start=1 /transl_table=11 /product="oxaloacetate decarboxylase subunit beta" /protein_id="NP_462261.1" /db_xref="GI:16766646" /db_xref="GeneID:1254874" /translation="MESLNALLQGMGLMHLGAGQAIMLLVSLLLLWLAIAKKFEPLLL LPIGFGGLLSNIPEAGLALTALESLLAHHDAGQLAVIAAKLHCAPDVHAIKEALALAL PSVQNQMENLAVDMGYTPGVLALFYKVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTL LLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLAPEL LGAIAVAAYSYMALVPLIQPPIMKALTSETERKIRMVQLRTVSKREKILFPVVLLMLV ALLLPDAAPLLGMFCFGNLMRESGVVERLSDTVQNGLINIVTIFLGLSVGAKLVADKF LQPQTLGILLLGVIAFGIGTAAGVLMAKLLNLCSKNKINPLIGSAGVSAVPMAARVSN KVGLESDAQNFLLMHAMGPNVAGVIGSAIAAGVMLKYVLAM" regulatory complement(3520041..3520046) /regulatory_class="ribosome_binding_site" /gene="oadB" /locus_tag="STM3351" /note="putative RBS for oadB; RegulonDB:STMS1H003364" gene complement(3520053..3521835) /gene="oadA" /locus_tag="STM3352" /db_xref="GeneID:1254875" CDS complement(3520053..3521828) /gene="oadA" /locus_tag="STM3352" /EC_number="4.1.1.3" /note="putative sodium ion pump; oxaloacetate decarboxylase alpha chain. (SW:DCOA_SALTY)" /codon_start=1 /transl_table=11 /product="oxaloacetate decarboxylase subunit alpha" /protein_id="NP_462262.1" /db_xref="GI:16766647" /db_xref="GeneID:1254875" /translation="MTIAITDVVLRDAHQSLFATRLRLDDMLPIAAALDDVGYGSLEC WGGATFDACIRFLGEDPWLRLRELKKAMPKTPLQMLLRGQNLLGYRHYADDVVERFVE RAVKNGMDVFRVFDAMNDPRNMKAALQAVRSHGAHAQGTLSYTTSPAHTLQTWLDLTE QLLETGVDSIAIKDMSGILTPMAAYELVSEIKKRFEVRLHLHCHATTGMAEMALLKAI EAGVDGVDTAISSMSATYGHPATEALVATLAGTEHDTGLDILKLENIAAYFREVRKKY HAFEGQLKGYDSRILVAQVPGGMLTNLESQLKQQNAADKLDQVLAEIPRVREDLGFIP LVTPTSQIVGTQAVLNVLTGERYKTIAKETAGILKGEYGHTPVPVNAALQARVLEGGA PVTCRPADLLKPELAELEADVRRQAQEKGITLAGNAIDDVLTVALFPQIGLKFLENRN NPAAFEPLPQAEAAQPVAKAEKPAASGIYTVEVEGKAFVVKVSDGGDISQLTAAVPAA SSAPVQAAAPAGAGTPVTAPLAGNIWKVIATEGQTVAEGDVLLILEAMKMETEIRAAQ AGTVRGIAVKSGDAVSVGDTLMTLA" regulatory complement(3521830..3521835) /regulatory_class="ribosome_binding_site" /gene="oadA" /locus_tag="STM3352" /note="putative RBS for oadA; RegulonDB:STMS1H003365" gene complement(3521844..3522103) /gene="oadG" /locus_tag="STM3353" /db_xref="GeneID:1254876" CDS complement(3521844..3522098) /gene="oadG" /locus_tag="STM3353" /note="putative sodium ion pump; oxaloacetate decarboxylase gamma chain. (SW:DCOG_SALTY)" /codon_start=1 /transl_table=11 /product="oxaloacetate decarboxylase subunit gamma" /protein_id="NP_462263.1" /db_xref="GI:16766648" /db_xref="GeneID:1254876" /translation="MTNAALLLGEGFTLMFLGMGFVLAFLFLLIFAIRGMSAAVNRFF PEPAPAPKAAPAAAAPVVDDFTRLKPVIAAAIHHHHRLNA" regulatory complement(3522098..3522103) /regulatory_class="ribosome_binding_site" /gene="oadG" /locus_tag="STM3353" /note="putative RBS for oadG; RegulonDB:STMS1H003366" gene complement(3522254..3522887) /locus_tag="STM3354" /db_xref="GeneID:1254877" CDS complement(3522254..3522871) /locus_tag="STM3354" /EC_number="4.2.1.32" /note="similar to E. coli L-tartrate dehydratase, subunit B (AAC76098.1); Blastp hit to AAC76098.1 (201 aa), 69% identity in aa 2 - 201" /codon_start=1 /transl_table=11 /product="L(+)-tartrate dehydratase subunit beta" /protein_id="NP_462264.1" /db_xref="GI:16766649" /db_xref="GeneID:1254877" /translation="MTKKILTTPIKDEDLADIKAGDIIYLNGHIVTCRDVAHRRLIEG GRELPVDVRGGAILHAGPIVRPIKGEDDKFEMVSVGPTTSMRMEKFEKEFIAQTGVKL IVGKGGMGKGTEEGCAEHKALHCVFPAGCAVVAAVCVEEIEDAQWRDLGMPETLWVCR VKEFGPLIVSIDTHGNNLFEQNKIIFNQRKEIVADEICQNVSFIK" gene complement(3522871..3523781) /locus_tag="STM3355" /db_xref="GeneID:1254878" CDS complement(3522871..3523770) /locus_tag="STM3355" /EC_number="4.2.1.32" /note="similar to E. coli L-tartrate dehydratase, subunit A (AAC76097.1); Blastp hit to AAC76097.1 (303 aa), 54% identity in aa 6 - 299" /codon_start=1 /transl_table=11 /product="L(+)-tartrate dehydratase subunit alpha" /protein_id="NP_462265.1" /db_xref="GI:16766650" /db_xref="GeneID:1254878" /translation="MSKSEQISHMTDVMAKFVGYTGKVLPDDVTAKLEDLHKKETSKL ADVIFTTMIENQRLAKELDRPSCQDTGVIQFLVECGTNFPLIGELEALLREAVIKATV DSPLRHNSVETFDEYNTGKNVGKGTPTVFWEIVPNSDQCSIYTYMAGGGCSLPGKAMV LMPGAGYEGVTRFVLDVMTSYGLNACPPLLVGVGVATSVETAALLSKKALMRPIGSHN ENERAASLEKMLEDGINKIGLGPQGMSGNTSVMGVNIENTARHPSTIGVAVNVGCWSH RKGHIVFDKDLNYTITSHSGVNF" regulatory complement(3522882..3522887) /regulatory_class="ribosome_binding_site" /locus_tag="STM3354" /note="putative RBS for STM3354; RegulonDB:STMS1H003367" regulatory complement(3523776..3523781) /regulatory_class="ribosome_binding_site" /locus_tag="STM3355" /note="putative RBS for STM3355; RegulonDB:STMS1H003368" gene complement(3523803..3525075) /locus_tag="STM3356" /db_xref="GeneID:1254879" CDS complement(3523803..3525071) /locus_tag="STM3356" /note="similar to E. coli putative transport protein (AAC75352.1); Blastp hit to AAC75352.1 (610 aa), 38% identity in aa 9 - 199, 34% identity in aa 441 - 610, 23% identity in aa 35 - 196, 22% identity in aa 425 - 594" /codon_start=1 /transl_table=11 /product="putative cation transporter" /protein_id="NP_462266.1" /db_xref="GI:16766651" /db_xref="GeneID:1254879" /translation="MEPITLTLCLLVFAIVMFVWEKVPLAVTSMIVCVALVITGVLNI KQAFAGFIDTNVILFVAMFIVGGALFETGMANKVGGVITRFAKTEKQLIFTIMVVVGL MSGVLSNTGTAAVLIPVVIGVAAKSGFSRSRLLMPLVFAAALGGNLSLIGAPGNLIAQ SALQNIGGGFGFFEYAKIGLPMLICGILYFLTIGYRFLPNNATGGEVGSVGVQRDYSH VPQWKQRLSLVVLIATILGMIFEKKIGVSLAVTGCIGALVLVVSGVLTEKQAYKAIDS QTIFIFGGTLALAKALEMTGAGKLVADYVIGMLGQNSSPFMLLIAVFALSVVMTNFMS NTATTALLVPVSLSIAAGMGADPRAVLMATVIGGSCAYATPIGMPANMMVLSAGGYKF VDYAKAGIPLIIVSTIVSLILLPILFPFHP" regulatory complement(3525070..3525075) /regulatory_class="ribosome_binding_site" /locus_tag="STM3356" /note="putative RBS for STM3356; RegulonDB:STMS1H003369" gene complement(3525282..3525953) /locus_tag="STM3357" /db_xref="GeneID:1254880" CDS complement(3525282..3525947) /locus_tag="STM3357" /note="similar to E. coli orf, hypothetical protein (AAC74613.1); Blastp hit to AAC74613.1 (228 aa), 23% identity in aa 15 - 214" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="NP_462267.1" /db_xref="GI:16766652" /db_xref="GeneID:1254880" /translation="MQKPKLGKIKLLSAKEQVAAVLRKAILSRELVEGQEITLEGIAG MVGVSSMPVREAFQILAADGLIKVRPNKGAVVLGINEQTIREHYEIRALLESEAVAKA SRPGSDISRIAQVHYAAEKALAENNSAEYSDLNQAFHMEIWNVAGNEKMKMLLCNMWN GLSMGHKVTEEEYAVISIQEHKSILQALELHDETLARQRMREHIIRSMENMLTRYVGD PSA" gene complement(3525934..3526567) /locus_tag="STM3358" /db_xref="GeneID:1254881" CDS complement(3525934..3526563) /locus_tag="STM3358" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="NP_462268.1" /db_xref="GI:16766653" /db_xref="GeneID:1254881" /translation="MKKIQRTQTRDHITQMLRYEILSGNIKAGEELAQESIAEQLGLS RMPVREALQSLEQEGFLIRLPNRHMQVAHLEADRVSHIFRVIAAMAAEMFSLIPSEVG DALLIRAQALAVAEDKSCELECHAMLISYVNNRYLEKVYQQFLDGYVSYVILHLKKDN QESAQLFAELADVIRQGRRDEIGQVMQRYFLSLAEIMRQHMKDWESAEA" regulatory complement(3525948..3525953) /regulatory_class="ribosome_binding_site" /locus_tag="STM3358" /note="putative RBS for STM3357; RegulonDB:STMS1H003370" regulatory complement(3526562..3526567) /regulatory_class="ribosome_binding_site" /locus_tag="STM3358" /note="putative RBS for STM3358; RegulonDB:STMS1H003371" gene complement(3526683..3527727) /gene="mdh" /locus_tag="STM3359" /db_xref="GeneID:1254882" CDS complement(3526683..3527621) /gene="mdh" /locus_tag="STM3359" /EC_number="1.1.1.37" /note="malate dehydrogenase. (SW:MDH_SALTY)" /codon_start=1 /transl_table=11 /product="malate dehydrogenase" /protein_id="NP_462269.1" /db_xref="GI:16766654" /db_xref="GeneID:1254882" /translation="MKVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAV DLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLV QQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAE LKGKLPTEVEVPVIGGHSGVTILPLLSQIPGVSFTEQEAAELTKRIQNAGTEVVEAKA GGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVE ERKSIGTLSAFEQHSLDAMLDTLKKDIQLGEDFINK" protein_bind complement(3527621..3527683) /gene="mdh" /locus_tag="STM3359" /note="putative binding site for ArcA, RegulonDB: STMS1H000015" /bound_moiety="ArcA" regulatory complement(3527628..3527633) /regulatory_class="ribosome_binding_site" /gene="mdh" /locus_tag="STM3359" /note="putative RBS for mdh; RegulonDB:STMS1H003372" regulatory complement(3527700..3527708) /regulatory_class="minus_10_signal" /gene="mdh" /locus_tag="STM3359" /note="putative -10_signal for mdh; RegulonDB:STMLTH004587" protein_bind complement(3527715..3527735) /note="putative binding site for CRP, RegulonDB: STMS1H000040" /bound_moiety="CRP" regulatory complement(3527719..3527727) /regulatory_class="minus_35_signal" /gene="mdh" /locus_tag="STM3359" /note="putative -35_signal for mdh; RegulonDB:STMLTH004587" gene 3527894..3528505 /gene="argR" /locus_tag="STM3360" /db_xref="GeneID:1254883" regulatory 3527894..3527902 /regulatory_class="minus_35_signal" /gene="argR" /locus_tag="STM3360" /note="putative -35_signal for argR; RegulonDB:STMLTH004588" regulatory 3527918..3527926 /regulatory_class="minus_10_signal" /gene="argR" /locus_tag="STM3360" /note="putative -10_signal for argR; RegulonDB:STMLTH004588" protein_bind 3527971..3527989 /gene="argR" /locus_tag="STM3360" /note="putative binding site for ArgR, RegulonDB: STMS1H000026" /bound_moiety="ArgR" protein_bind 3527991..3528009 /gene="argR" /locus_tag="STM3360" /note="putative binding site for ArgR, RegulonDB: STMS1H000030" /bound_moiety="ArgR" regulatory 3528024..3528029 /regulatory_class="ribosome_binding_site" /gene="argR" /locus_tag="STM3360" /note="putative RBS for argR; RegulonDB:STMS1H003373" CDS 3528035..3528505 /gene="argR" /locus_tag="STM3360" /note="ArgR family; arginine repressor. (SW:ARGR_SALTY)" /codon_start=1 /transl_table=11 /product="arginine repressor" /protein_id="NP_462270.1" /db_xref="GI:16766655" /db_xref="GeneID:1254883" /translation="MRSSAKQEELVRAFKALLKEEKFSSQGEIVLALQDQGFENINQS KVSRMLTKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHTSP GAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPASGFSVRDLYEAILELFEQEL" gene 3528858..3529133 /gene="yhcN" /locus_tag="STM3361" /db_xref="GeneID:1254884" regulatory 3528858..3528863 /regulatory_class="ribosome_binding_site" /gene="yhcN" /locus_tag="STM3361" /note="putative RBS for yhcN; RegulonDB:STMS1H003374" CDS 3528870..3529133 /gene="yhcN" /locus_tag="STM3361" /note="similar to E. coli orf, hypothetical protein (AAC76270.1); Blastp hit to AAC76270.1 (104 aa), 79% identity in aa 18 - 104" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462271.1" /db_xref="GI:16766656" /db_xref="GeneID:1254884" /translation="MKIKTTVATLSILSVLSFGAFAAEPISAEQAQNREAIGSVSVSA IGSSPMDMNAMLSKKADEQGATAYHITEARSGSNWHATAELYK" gene 3529230..3529503 /locus_tag="STM3362" /db_xref="GeneID:1254885" regulatory 3529230..3529235 /regulatory_class="ribosome_binding_site" /locus_tag="STM3362" /note="putative RBS for STM3362; RegulonDB:STMS1H003375" CDS 3529237..3529503 /locus_tag="STM3362" /note="similar to E. coli orf, hypothetical protein (AAC76270.1); Blastp hit to AAC76270.1 (104 aa), 53% identity in aa 18 - 104" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462272.1" /db_xref="GI:16766657" /db_xref="GeneID:1254885" /translation="MKTKYIIASLGLATLLSFGANAAVHQVNAEQAQNLQPMGTISVS QIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK" gene complement(3529563..3529848) /gene="yhcO" /locus_tag="STM3363" /db_xref="GeneID:1254886" CDS complement(3529563..3529835) /gene="yhcO" /locus_tag="STM3363" /note="similar to E. coli orf, hypothetical protein (AAC76271.1); Blastp hit to AAC76271.1 (90 aa), 76% identity in aa 1 - 90" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462273.1" /db_xref="GI:16766658" /db_xref="GeneID:1254886" /translation="MNVYTFDFNDIKNQSDFYREFTQTFGLASEKVSDLDTLWDAVMS DILPLPLEIEFVHLPDKLRRRYGALILLFDEAEEELEGRLRFNVRH" regulatory complement(3529843..3529848) /regulatory_class="ribosome_binding_site" /gene="yhcO" /locus_tag="STM3363" /note="putative RBS for yhcO; RegulonDB:STMS1H003376" gene complement(3530007..3531974) /gene="yhcP" /locus_tag="STM3364" /db_xref="GeneID:1254887" CDS complement(3530007..3531974) /gene="yhcP" /locus_tag="STM3364" /note="similar to E. coli orf, hypothetical protein (AAC76272.1); Blastp hit to AAC76272.1 (655 aa), 92% identity in aa 1 - 655" /codon_start=1 /transl_table=11 /product="p-hydroxybenzoic acid efflux pump subunit AaeB" /protein_id="NP_462274.1" /db_xref="GI:16766659" /db_xref="GeneID:1254887" /translation="MGIFSIANQHIRFAVKLACAIVLALFIGFHFQLETPRWAVLTAA IVAAGPAFAAGGEPYSGAIRYRGMLRIIGTFIGCIAALIIIISMIRAPLLMILVCCVW AGFCTWISSLVRIENSYAWGLSGYTALIIVITIQTEPLLTPQFALERCSEIVIGIGCA ILADLLFSPRSIKQEVDRELDSLLVAQYQLMQLCIKHGDSEEVDNAWGDLVRRTAALE GMRSNLNMESSRWVRANRRLKALNTLSLTLITQSCETYLIQNTRPELITDTFRELFET PVETVQDVHRQLKRMRRVIVWTGERETPVTLYSWVGAATRYLLLKRGVISNTKISATE EEILQGEPVVKVESAERHHAMVNFWRTTLSCILGTLFWLWTGWTSGNGAMVMIAVVTS LAMRLPNPRMVCIDFIYGTLAALPLGLLYFLVIIPNTQQSMLLLCLSLAVLGFFIGIE VQKRRLGSMGALASTINIIVLDNPMTFHFSQFLDSALGQIVGCMLAFIVILLVRDKSK DRTGRVLLNQFVSAAVSAMTTNVVRRKENRLPALYQQLFLLMNKFPGDLPKFRLALTM IIAHQRLRDAPIPVNEDLSVFHRQLRRTADHVISAGSDDKRRRYFGQLLDELDIYQEK LRIWEAPPQVTEPVKRLTGMLHKYQNALTDS" gene complement(3531980..3532921) /gene="yhcQ" /locus_tag="STM3365" /db_xref="GeneID:1254888" CDS complement(3531980..3532912) /gene="yhcQ" /locus_tag="STM3365" /note="similar to E. coli putative membrane protein (AAC76273.1); Blastp hit to AAC76273.1 (310 aa), 92% identity in aa 1 - 310" /codon_start=1 /transl_table=11 /product="p-hydroxybenzoic acid efflux pump subunit AaeA" /protein_id="NP_462275.1" /db_xref="GI:16766660" /db_xref="GeneID:1254888" /translation="MKTLTRKLSRTAITLVLVILAFIAIFRAWVYYTESPWTRDARFS ADVVAIAPDVAGLITHVNVHDNQLVKKDQVLFTIDQPRYQKALAEAEADVAYYQVLAQ EKRQEAGRRNRLGVQAMSREEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAP ADGWVTNLNVYAGEFITRGSTAVALVKKNSFYVQAYMEETKLEGVRPGYRAEITPLGS NRVLKGTVDSVAAGVTNASSTSDAKGMATIDSNLEWVRLAQRVPVRIRLDEQQGNLWP AGTTATVVITGKQDRDASQDSFFRKLAHRLREFG" regulatory complement(3532916..3532921) /regulatory_class="ribosome_binding_site" /gene="yhcQ" /locus_tag="STM3365" /note="putative RBS for yhcQ; RegulonDB:STMS1H003377" gene complement(3532920..3533132) /gene="yhcR" /locus_tag="STM3366" /db_xref="GeneID:1254889" CDS complement(3532920..3533123) /gene="yhcR" /locus_tag="STM3366" /note="similar to E. coli orf, hypothetical protein (AAC76274.1); Blastp hit to AAC76274.1 (90 aa), 98% identity in aa 24 - 90" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_462276.1" /db_xref="GI:16766661" /db_xref="GeneID:1254889" /translation="MSLFPVIVVFGLSFPPIFFELLLSLAIFWLVRRMLVPTGIYDFV WHPALFNTALYCCLFYLISRLFV" regulatory complement(3533127..3533132) /regulatory_class="ribosome_binding_site" /gene="yhcR" /locus_tag="STM3366" /note="putative RBS for yhcR; RegulonDB:STMS1H003378" gene 3533305..3534234 /gene="yhcS" /locus_tag="STM3367" /db_xref="GeneID:1254890" CDS 3533305..3534234 /gene="yhcS" /locus_tag="STM3367" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC76275.1); Blastp hit to AAC76275.1 (309 aa), 95% identity in aa 1 - 309" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_462277.1" /db_xref="GI:16766662" /db_xref="GeneID:1254890" /translation="MERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDEL QVKLLNRSTRSIGLTEAGKIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTM AQNVLAGLTAKLLKEYPGLAVNLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGA MPMVVCAAKPYLAQYGVPEKPADLSSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRF VTNDPMTLVRWLTAGTGIAYVPLMWVIDEINRGDLEILLPRYQSDPRPVYALYTEKDK LPLKVQVVINALTDYFVDVAHLFQGMHGRGKEK" gene complement(3534357..3535802) /gene="tldD" /locus_tag="STM3368" /db_xref="GeneID:1254891" CDS complement(3534357..3535802) /gene="tldD" /locus_tag="STM3368" /note="similar to E. coli suppresses inhibitory activity of CsrA (AAC76276.1); Blastp hit to AAC76276.1 (481 aa), 94% identity in aa 1 - 481" /codon_start=1 /transl_table=11 /product="metalloprotease TldD" /protein_id="NP_462278.1" /db_xref="GI:16766663" /db_xref="GeneID:1254891" /translation="MSLNLVSEQLLAANGLNHQDLFAILGQLAERRLDYGDLYFQSSY HESWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRE NGEGKVKTLAAVAHQPLYTTLDPLQSMSREEKLDILRRVDKAAREADKRVQEVNASLT GVYELILVAATDGTLAADVRPLVRLSVSVQVEEDGKRERGASGGGGRFGYEYFLADLD GEVRADAWAKEAVRMALVNLSAVAAPAGTLPVVLGAGWPGVLLHEAVGHGLEGDFNRR GTSVFSGQIGEQVASALCTVVDDGTMMNRRGSVAIDDEGTPGQYNVLIENGVLKGYMQ DKLNARLMGAAPTGNGRRESYAHLPMPRMTNTYMLAGQSTPQEIIESVEYGIYAPNFG GGQVDITSGKFVFSTSEAYLIENGKVTTPVKGATLIGSGIETMQQISMVGNDLKLDNG VGVCGKEGQSLPVGVGQPTLKVDNLTVGGTA" gene complement(3535947..3539759) /gene="yhdP" /locus_tag="STM3369" /db_xref="GeneID:1254892" CDS complement(3535947..3539747) /gene="yhdP" /locus_tag="STM3369" /note="similar to E. coli orf, hypothetical protein (AAC76277.1); Blastp hit to AAC76277.1 (986 aa), 80% identity in aa 1 - 986" /codon_start=1 /transl_table=11 /product="TIGR02099 family protein" /protein_id="NP_462279.1" /db_xref="GI:16766664" /db_xref="GeneID:1254892" /translation="MRRLPGILLLTGAALIVIAALLVSGLRLALPHLDAWRPAILNKI ESVTGVPVAASQLSASWQNFGPTLEAHNIHAALKDGGELSIKRVTLALDVWQSLLHMR WQFRDLTFWQLNFRTNTPLQSSDGEGIETSRLSDLFLRQFDHFDLRDSQISFLTLSGQ RAELAIPQLTWLNGKERHRAEGEVSLSSLTGQHGVMQVRMDLRDDDGLLNNGRVWLQA DDIDVKPWLGKWMQDNVALQTARFSLEGWMTLSKGEIAGGDVWLKQGGASWLGDNTTH TLSVDNLTAQISREQPGWQFYIPDTRITLDGKPWPSGALTVAWLPQQDVGGENHTRSD ELRIRASNLELAGLEALRPLAAKLSPVLGEIWQATQPSGKIATLALDIPLQATEKTRF QASWENLAWKQWKLLPGAEHFSGTLAGSVEDGQMKVAMQQAKMPYETVFRAPLEIENG VATLSWLKNENGFQLDGRDIDVKAKAVHARGGFRYLQPTGDEPWLGILAGISTDDGSQ AWRYFPENLMGKALVDYLSGAIQGGEADNATLVYGGNPHLFPYKHNEGQFEVLVPLRN ATFAFQPDWPALKNLNIELDFLNDGLWMRSDSVDLGGVKASKLAAAIPDYSKEKLLID ADINGPGKAVGPYFDETPLKDSLGSTLAELQLDGDVNARLHLDIPLDGEQVTAEGDVS LRNNSLFIKPLNSTLKNLNGKFSFVNGALKSGPLTANWFNQPLNLDFSTTEGAKAYQV AVNLNGNWQPTRMGVLPPQLNDALSGSVTWNGKVGIDLPYHADTTYHIELNGDLRNVS SHLPSPLNKPAGEAIPVNIQADGNLKSFALTGSAGSKNHFNSRWLLNQKLTLDRAIWT TDSRTIPPLPAQQGVELNLPALDGAQWLALFQKGAADNVSSSAEFPQRVTLRTPALSL GGQQWNNLSVVSAPSLNGTKIEAQGREVNATLLMRNHAPWLANIKYLYYNPGVAKTHA SSPTPTSPLASANTISFRGWPDLQLRCEECWLWGQKYGRIDGDFAIKGNTLTLANGLI DTGFARLKANGEWVNAPGNERTSLKGSLHGSNLDTAAGFFGISTPIQNASFNVDYDLH WRNPPWQPDEATLNGILRTRLGKGEFTDLSSGHAGQLLRLLSFDALLRKLRFDFRDTF SEGFYFDSIHSTAWIKDGVLHTDDTLVDGLEADIAMKGSVDLVRRRLDMEAVVAPEIS ATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYRITGPVDAPQINEVLRQPRK ESQQ" regulatory complement(3539754..3539759) /regulatory_class="ribosome_binding_site" /gene="yhdP" /locus_tag="STM3369" /note="putative RBS for yhdP; RegulonDB:STMS1H003379" gene complement(3539854..3541334) /gene="cafA" /locus_tag="STM3370" /db_xref="GeneID:1254893" CDS complement(3539854..3541323) /gene="cafA" /locus_tag="STM3370" /EC_number="3.1.4.-" /note="similar to E. coli bundles of cytoplasmic filaments (AAC76279.1); Blastp hit to AAC76279.1 (495 aa), 96% identity in aa 7 - 495" /codon_start=1 /transl_table=11 /product="ribonuclease E/G" /protein_id="NP_462280.1" /db_xref="GI:16766665" /db_xref="GeneID:1254893" /translation="MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKG RVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGDEQKQFTVRDISELVRQGQD LMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAE YCDEQGGFIIRTAAEGVCEEDLASDAAYLKRVWTKVMERKKRPQTRYQMYGELALAQR VLRDFADAQLDRIRVDSRLTYESLLEFTAEYIPEMTSKLEHYSGHQPIFDLYDVENEI QRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQ LRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSINGFSPLGLVEMTRKR TRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE ALKGEESHALAEVEIFVGKQVKVQVEPLYNQEQFDVVMM" gene complement(3541313..3541915) /gene="yhdE" /locus_tag="STM3371" /db_xref="GeneID:1254894" CDS complement(3541313..3541906) /gene="yhdE" /locus_tag="STM3371" /note="similar to E. coli orf, hypothetical protein (AAC76280.1); Blastp hit to AAC76280.1 (197 aa), 84% identity in aa 1 - 197" /codon_start=1 /transl_table=11 /product="septum formation inhibitor Maf" /protein_id="NP_462281.1" /db_xref="GI:16766666" /db_xref="GeneID:1254894" /translation="MTTLYLASGSPRRQELLTQLGFSFEQVVPGIEEQRRAQESAQQY VVRLAREKAQAGVALVPRDLPVLGADTIVVLNGEVLEKPRDAAHAAEMLRLLSGNTHQ VMTAVALADSQQTLDCLVVTEVTFRTLSAQDITGYVASGEPLDKAGAYGIQGRGGCFV RKINGSYHAVVGLPLVETYELLSHFNALRDKRDKHDG" regulatory complement(3541329..3541334) /regulatory_class="ribosome_binding_site" /gene="yhdE" /locus_tag="STM3371" /note="putative RBS for cafA; RegulonDB:STMS1H003380" regulatory complement(3541910..3541915) /regulatory_class="ribosome_binding_site" /gene="yhdE" /locus_tag="STM3371" /note="putative RBS for yhdE; RegulonDB:STMS1H003381" gene complement(3541915..3542413) /gene="mreD" /locus_tag="STM3372" /db_xref="GeneID:1254895" CDS complement(3541915..3542406) /gene="mreD" /locus_tag="STM3372" /note="similar to E. coli rod shape-determining protein (AAC76281.1); Blastp hit to AAC76281.1 (162 aa), 94% identity in aa 1 - 162" /codon_start=1 /transl_table=11 /product="rod shape-determining protein" /protein_id="NP_462282.1" /db_xref="GI:16766667" /db_xref="GeneID:1254895" /translation="MVASYRSQGRWVIWLSFLIALLLQIMPWPDDIIVFRPNWVLLIL LYWILALPHRVNVGTGFVMGAILDLISGSTLGVRALSMSIVAYLVALKFQLFRNLALW QQALVVMLLSLAVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWLFLLMRKVRQQF AVQ" gene complement(3542406..3543475) /gene="mreC" /locus_tag="STM3373" /db_xref="GeneID:1254896" CDS complement(3542406..3543458) /gene="mreC" /locus_tag="STM3373" /note="similar to E. coli rod shape-determining protein (AAC76282.1); Blastp hit to AAC76282.1 (367 aa), 89% identity in aa 1 - 366" /codon_start=1 /transl_table=11 /product="rod shape-determining protein MreC" /protein_id="NP_462283.1" /db_xref="GI:16766668" /db_xref="GeneID:1254896" /translation="MKPIFSRGPSLQIRLILAVLVALGVIIADSRLGTFSQIRTYMDT AVSPFYFISNGPRELLDSVSQTLASRDQLELENRALRQELLLKNSDLLMLGQYKQENA RLRELLGSPLRQDEQKMVTQVISTVNDPYSDQVVIDKGSVNGVYEGQPVISDKGVVGQ VVAVAKLTSRVLLICDATHALPIQVLRNDIRVIAAGNGCTDDLQLEHLPANTDIRVGD VLVTSGLGGRFPEGYPVAVVSSVKLDTQRAYTVIQARPTAGLQRLRYLLLLWGADRNG ANPMTPEEVHRVANERLMQMMPQVLPSPDAMGPPAPVPDPATGITQPSAGQTAPVSTQ PSPSGATTPPARAPGG" regulatory complement(3542408..3542413) /regulatory_class="ribosome_binding_site" /gene="mreD" /locus_tag="STM3372" /note="putative RBS for mreD; RegulonDB:STMS1H003382" regulatory complement(3543470..3543475) /regulatory_class="ribosome_binding_site" /gene="mreC" /locus_tag="STM3373" /note="putative RBS for mreC; RegulonDB:STMS1H003383" gene complement(3543523..3544583) /gene="mreB" /locus_tag="STM3374" /db_xref="GeneID:1254897" CDS complement(3543523..3544566) /gene="mreB" /locus_tag="STM3374" /note="HSP70 class molecular chaperones involved in cell morphogenesis; similar to E. coli regulator of ftsI, penicillin binding protein 3, septation function (AAC76283.1); Blastp hit to AAC76283.1 (367 aa), 100% identity in aa 21 - 367" /codon_start=1 /transl_table=11 /product="rod shape-determining protein" /protein_id="NP_462284.1" /db_xref="GI:16766669" /db_xref="GeneID:1254897" /translation="MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQD RAGSPKSVAAVGHDAKQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNS FMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATG SMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERI KHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALE QCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALE MIDMHGGDLFSEE" regulatory complement(3544578..3544583) /regulatory_class="ribosome_binding_site" /gene="mreB" /locus_tag="STM3374" /note="putative RBS for mreB; RegulonDB:STMS1H003384" gene complement(3544874..3546831) /gene="yhdA" /locus_tag="STM3375" /db_xref="GeneID:1254898" CDS complement(3544874..3546814) /gene="yhdA" /locus_tag="STM3375" /note="similar to E. coli orf, hypothetical protein (AAC76284.1); Blastp hit to AAC76284.1 (646 aa), 84% identity in aa 1 - 646" /codon_start=1 /transl_table=11 /product="RNase E specificity factor CsrD" /protein_id="NP_462285.1" /db_xref="GI:16766670" /db_xref="GeneID:1254898" /translation="MRLTTKFSAFITLLTGLTIFVTLIGCSLSFYNAVQYKYVSRVQA TATAIDTHLVTHDIVSLTPQIDELMIASDIVRVDLLQGERSVYSHSRARGYRPAGTSD MYRELVVPLIKHPGMSLRLAYQDPMGNYFHSLITTAPLTLAIGFIVLILFLSVRWLQR QLSGQELLEIRSTRILNGERGANVRGSVYEWPARTSSALDVLLSEIQFAHEQRSRLDT LIRSYAAQDTKTGLGNRLFFDNQLATLLEDQEKVGVHGVVMMIRLPDFNLLRDSLGGN QAEEQMFMLINLLSTFIMRYPGSLLARYHRSDFAVLLPHRTLKEAESIAGQLLKAVDA LPANKMLDRDDMVHIGICAWRSGQSTEQVMEHAEAAARNAALQGGNSWAIYDDTLPEK GRGNVRWRTLIEQMLNRGGPRLYQKPAVTREGRVHHRELMCRIYDGKEEVSSAEYMPM VLQFGLSEEYDRLQISRLITLLGYWPDENLAMQLTVESLIRPRFQRWLRDTLMQCEKS QRNRIIIELAEADVCQHISRLQPILRLVNALGVRVAVTQAGLTLVSTSWIKALNVELL KLHPSLVRNIEKRTENQLLVQSLVEACAGTPTQVYATGVRSRGEWQTLTKRGVAGGQG DFFASSQLLDTNVKKYSQRYSV" regulatory complement(3546826..3546831) /regulatory_class="ribosome_binding_site" /gene="yhdA" /locus_tag="STM3375" /note="putative RBS for yhdA; RegulonDB:STMS1H003385" gene 3547007..3547992 /gene="yhdH" /locus_tag="STM3376" /db_xref="GeneID:1254899" regulatory 3547007..3547012 /regulatory_class="ribosome_binding_site" /gene="yhdH" /locus_tag="STM3376" /note="putative RBS for yhdH; RegulonDB:STMS1H003386" CDS 3547018..3547992 /gene="yhdH" /locus_tag="STM3376" /note="similar to E. coli putative dehydrogenase (AAC76285.1); Blastp hit to AAC76285.1 (324 aa), 88% identity in aa 1 - 323" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_462286.1" /db_xref="GI:16766671" /db_xref="GeneID:1254899" /translation="MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDA LAITGKGKIIRHFPMIPGIDFAGTVHASEDPRFHAGQEVLLTGWGVGENHWGGLAERA RVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVG STAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDT VGDKVLAKVLAQMNYGGCVAACGLAGGFALPTTVMPFILRNVRLQGVDSVMTPPARRA EAWARLVKDLPESFYAQAATEITLADAPKFADAIINNQVQGRTLVKIK" gene 3548092..3549109 /locus_tag="STM3377" /db_xref="GeneID:1254900" regulatory 3548092..3548097 /regulatory_class="ribosome_binding_site" /locus_tag="STM3377" /note="putative RBS for STM3377; RegulonDB:STMS1H003387" CDS 3548105..3549109 /locus_tag="STM3377" /note="similar to E. coli putative reductase (AAC75037.1); Blastp hit to AAC75037.1 (334 aa), 88% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="mononuclear molybdenum enzyme YedY" /protein_id="NP_462287.1" /db_xref="GI:16766672" /db_xref="GeneID:1254900" /translation="MKKIRPLTEADVTAESAFFMQRRQVLKALGISAAALSLPSTAQA DLFSWFKGNDRPKAPAGKPLEFSQPAAWRSDLALTPEDKVTGYNNFYEFGLDKADPAA NAGSLKTEPWTLKISGEVAKPFTLDYDDLTHRFPLEERIYRMRCVEAWSMVVPWIGFP LYKLLAQAQPTSHAKYVAFETLYAPDDMPGQKDRFIGGGLKYPYVEGLRLDEAMHPLT LMTVGVYGKALPPQNGAPIRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLSAPNEYG FYANVNPHVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYANEVASLYRGLNLRENF " gene 3549094..3549709 /locus_tag="STM3378" /db_xref="GeneID:1254901" regulatory 3549094..3549099 /regulatory_class="ribosome_binding_site" /locus_tag="STM3378" /note="putative RBS for STM3378; RegulonDB:STMS1H003388" CDS 3549110..3549709 /locus_tag="STM3378" /note="similar to E. coli orf, hypothetical protein (AAC75038.1); Blastp hit to AAC75038.1 (211 aa), 85% identity in aa 1 - 195" /codon_start=1 /transl_table=11 /product="sulfoxide reductase heme-binding subunit YedZ" /protein_id="NP_462288.1" /db_xref="GI:16766673" /db_xref="GeneID:1254901" /translation="MRLTAKQITWLKVCLHLAGFLPLLWLFWAINHGGLSADPVKDIQ HFTGRTALKFLLATLLVSPLARYAKQPLLIRTRRLLGLWCFVWATLHLTSYALLELGI HNLALLGSELISRPYLTLGIISWLVLLALTLTSTQFAQRKLGKRWQTLHNVVYLVAIL APIHYLWSVKILSPQPVIYAALALALLALRYRKFRQWWR" gene 3550038..3550572 /gene="accB" /locus_tag="STM3379" /db_xref="GeneID:1254902" regulatory 3550038..3550046 /regulatory_class="minus_35_signal" /gene="accB" /locus_tag="STM3379" /note="putative -35_signal for accB; RegulonDB:STMLTH004589" regulatory 3550064..3550072 /regulatory_class="minus_10_signal" /gene="accB" /locus_tag="STM3379" /note="putative -10_signal for accB; RegulonDB:STMLTH004589" regulatory 3550089..3550094 /regulatory_class="ribosome_binding_site" /gene="accB" /locus_tag="STM3379" /note="putative RBS for accB; RegulonDB:STMS1H003389" CDS 3550102..3550572 /gene="accB" /locus_tag="STM3379" /EC_number="6.4.1.2" /note="carrier of biotin; similar to E. coli acetylCoA carboxylase, BCCP subunit; carrier of biotin (AAC76287.1); Blastp hit to AAC76287.1 (156 aa), 92% identity in aa 1 - 156" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase biotin carboxyl carrier subunit" /protein_id="NP_462289.1" /db_xref="GI:16766674" /db_xref="GeneID:1254902" /translation="MDIRKIKKLIELVEESGISELEISEGEESVRISRTTANAGFPVM QQAYAAPMMQQPALSNAVAPAATPAMEAPAAAEISGHIVRSPMVGTFYRTPSPDAKAF IEVGQKVNVGDTLCIVEAMKMMNQIEADKAGTVKAILVESGQPVEFDEPLVVIE" gene 3550574..3551932 /gene="accC" /locus_tag="STM3380" /db_xref="GeneID:1254903" regulatory 3550574..3550579 /regulatory_class="ribosome_binding_site" /gene="accC" /locus_tag="STM3380" /note="putative RBS for accC; RegulonDB:STMS1H003390" CDS 3550583..3551932 /gene="accC" /locus_tag="STM3380" /EC_number="6.3.4.14" /note="similar to E. coli acetyl CoA carboxylase, biotin carboxylase subunit (AAC76288.1); Blastp hit to AAC76288.1 (449 aa), 96% identity in aa 1 - 449" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase biotin carboxylase subunit" /protein_id="NP_462290.1" /db_xref="GI:16766675" /db_xref="GeneID:1254903" /translation="MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLL ADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIF IGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDGPLGDDMNANRAHAKRIGYPVIIKA SGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFSNDMVYMEKYLENPRHIEIQVLADG QGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFE FLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSITQDEVVVRGHA VECRINAEDPNTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYG ENRDVAIARMKNALQELIIDGIKTNIDLQTRIMNDEHFQHGGTNIHYLEKKLGLQEK" gene 3552029..3552283 /gene="yhdT" /locus_tag="STM3381" /db_xref="GeneID:1254904" regulatory 3552029..3552034 /regulatory_class="ribosome_binding_site" /gene="yhdT" /locus_tag="STM3381" /note="putative RBS for yhdT; RegulonDB:STMS1H003391" CDS 3552041..3552283 /gene="yhdT" /locus_tag="STM3381" /note="similar to E. coli orf, hypothetical protein (AAC76289.1); Blastp hit to AAC76289.1 (80 aa), 82% identity in aa 1 - 80" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462291.1" /db_xref="GI:16766676" /db_xref="GeneID:1254904" /translation="MDARFVQAHKEARWALWLTLCYLAAWLVAAYLPGDSPGITGLPH WFEMACLLTPLVFILLCWAMVKFIYRDISLEDDDAA" gene 3552260..3553724 /gene="panF" /locus_tag="STM3382" /db_xref="GeneID:1254905" regulatory 3552260..3552265 /regulatory_class="ribosome_binding_site" /gene="yhdT" /locus_tag="STM3381" /note="putative RBS for panF; RegulonDB:STMS1H003392" CDS 3552273..3553724 /gene="panF" /locus_tag="STM3382" /note="similar to E. coli sodium/pantothenate symporter (AAC76290.1); Blastp hit to AAC76290.1 (485 aa), 93% identity in aa 3 - 485" /codon_start=1 /transl_table=11 /product="sodium/panthothenate symporter" /protein_id="NP_462292.1" /db_xref="GI:16766677" /db_xref="GeneID:1254905" /translation="MQLEVILPLVAYLVVVFGVSIYAMRKRTAGTFLNEYFLGSRSMG GIVLAMTLTATYISASSFIGGPGAAYKYGLGWVLLAMIQLPAVWLSLGILGKKFAILA RRYNAVTLNDMLFARYQSRLLVWLASLSLLVAFIGAMTVQFIGGARLLETAAGIPYET GLLIFGVSIALYTAFGGFRASVLNDTLQGLVMLVGTIVLLVGVIHAAGGLSQAVDTLH ALDPKLVTPQGADDILSPAFMTSFWVLVCFGVIGLPHTAVRCISYKDSKAVHRGIIIG TIVVAILMFGMHLAGALGRAVLPDLTVPDLVIPTLMVKVLPPFAAGIFLAAPMAAIMS TINAQLLQSSATIIKDLYLNLRPDQMQNEIRLKRMSAAITLLLGALLLLAAWKPPEMI IWLNLLAFGGLEAVFLWPLVLGLYWERANAAGALSAMIVGGVLYALLATFNIQYLGFH PIVPALLLSLLAFLIGNRFGSSASQATVLSTDK" gene 3553736..3554617 /gene="prmA" /locus_tag="STM3383" /db_xref="GeneID:1254906" CDS 3553736..3554617 /gene="prmA" /locus_tag="STM3383" /EC_number="2.1.1.-" /note="similar to E. coli methylase for 50S ribosomal subunit protein L11 (AAC76291.1); Blastp hit to AAC76291.1 (293 aa), 95% identity in aa 1 - 292" /codon_start=1 /transl_table=11 /product="ribosomal protein L11 methyltransferase" /protein_id="NP_462293.1" /db_xref="GI:16766678" /db_xref="GeneID:1254906" /translation="MPWIQLKLNTTGANAEELSDALMEAGAVSITFQDTHDTPVFEPL PGETRLWGDTDVIGLFDAETDMKDVVAILEQHPLLGAGFAHKIEQLEDKDWEREWMDN FHPMRFGERLWICPSWRDIPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDGLDLNGK TVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAERNGVSDRLELYLPKDQ PEAMKADVVVANILAGPLRELAPLISVLPVEGGLLGLSGILASQAESVCDAYAELFTL DPVVEKEEWCRITGRKK" gene 3555169..3556243 /gene="yhdG" /locus_tag="STM3384" /db_xref="GeneID:1254907" regulatory 3555169..3555177 /regulatory_class="minus_35_signal" /gene="yhdG" /locus_tag="STM3384" /note="putative -35_signal for yhdG; RegulonDB:STMLTH004590" protein_bind 3555195..3555211 /gene="yhdG" /locus_tag="STM3384" /note="putative binding site for FIS, RegulonDB: STMS1H000148" /bound_moiety="FIS" regulatory 3555196..3555204 /regulatory_class="minus_10_signal" /gene="yhdG" /locus_tag="STM3384" /note="putative -10_signal for yhdG; RegulonDB:STMLTH004590" regulatory 3555260..3555265 /regulatory_class="ribosome_binding_site" /gene="yhdG" /locus_tag="STM3384" /note="putative RBS for yhdG; RegulonDB:STMS1H003393" CDS 3555278..3556243 /gene="yhdG" /locus_tag="STM3384" /note="hypothetical 35.9 Kda protein in pmrA-fis intergenic region (ORF1). (SW:YHDG_SALTY)" /codon_start=1 /transl_table=11 /product="tRNA dihydrouridine synthase DusB" /protein_id="NP_462294.1" /db_xref="GI:16766679" /db_xref="GeneID:1254907" /translation="MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSS NPQVWESDKSRLRMVHVDEPGIRTVQIAGSDPVEMADAARINVESGAQIIDINMGCPA KKVNRKLAGSALLQYPDLVKSILIGVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAED CGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPIIANGDITNPHKARAVLDYTGA DALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCTHVRELHDFYGQAKGY RIARKHVSWYLQEHAPDDQFRRTFNAIEDASEQLEALEAYFENFA" gene 3556262..3556565 /gene="fis" /locus_tag="STM3385" /db_xref="GeneID:1254908" regulatory 3556262..3556267 /regulatory_class="ribosome_binding_site" /gene="fis" /locus_tag="STM3385" /note="putative RBS for fis; RegulonDB:STMS1H003394" CDS 3556269..3556565 /gene="fis" /locus_tag="STM3385" /note="DNA-binding protein FIS (factor-for-inversion stimulation protein)(HIN recombinational enhancer binding protein). (SW:FIS_ECOLI)" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="NP_462295.1" /db_xref="GI:16766680" /db_xref="GeneID:1254908" /translation="MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNG QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN" gene 3556638..3557535 /gene="yhdJ" /locus_tag="STM3386" /db_xref="GeneID:1254909" regulatory 3556638..3556643 /regulatory_class="ribosome_binding_site" /gene="yhdJ" /locus_tag="STM3386" /note="putative RBS for yhdJ; RegulonDB:STMS1H003395" CDS 3556651..3557535 /gene="yhdJ" /locus_tag="STM3386" /EC_number="2.1.1.72" /note="similar to E. coli putative methyltransferase (AAC76294.1); Blastp hit to AAC76294.1 (296 aa), 80% identity in aa 3 - 285" /codon_start=1 /transl_table=11 /product="adenine-specific DNA-methyltransferase" /protein_id="NP_462296.1" /db_xref="GI:16766681" /db_xref="GeneID:1254909" /translation="MKAECEPQYFGDESKKIIHGDALTELKKLPSESIDLIFADPPYN IGKDFDGMVESWDEASFLAWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTLF TIKSRIVWSYDSSGVQAKKYFGSMYEPILMMVKNPKSYTFNRDAILVETTTGAKRALI DYRKNPPQPYNQKKVPGNVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTV LDPFAGSFTTGAVAAASGRKFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQ NLSKKQRNVGINALSSEK" gene 3557606..3557782 /gene="yhdU" /locus_tag="STM3387" /db_xref="GeneID:1254910" regulatory 3557606..3557611 /regulatory_class="ribosome_binding_site" /gene="yhdU" /locus_tag="STM3387" /note="putative RBS for yhdU; RegulonDB:STMS1H003396" CDS 3557618..3557782 /gene="yhdU" /locus_tag="STM3387" /note="similar to E. coli orf, hypothetical protein (AAC76295.1); Blastp hit to AAC76295.1 (59 aa), 84% identity in aa 1 - 53" /codon_start=1 /transl_table=11 /product="DUF2556 domain-containing protein" /protein_id="NP_462297.1" /db_xref="GI:16766682" /db_xref="GeneID:1254910" /translation="MIRKYWWLVVFAVSVFLFDALLMQWIELMATEQDKCRNMDSVNP LKLINCTDLE" gene 3557933..3560032 /locus_tag="STM3388" /db_xref="GeneID:1254911" CDS 3557933..3560032 /locus_tag="STM3388" /note="Diguanylate cyclase/phosphodiesterase domain 1; Diguanylate cyclase/phosphodiesterase domain 2; similar to E. coli orf, hypothetical protein (AAC74367.1); Blastp hit to AAC74367.1 (661 aa), 37% identity in aa 228 - 652, 39% identity in aa 144 - 171" /codon_start=1 /transl_table=11 /product="histidine kinase" /protein_id="NP_462298.1" /db_xref="GI:16766683" /db_xref="GeneID:1254911" /translation="MPVSEYNHILVAVSFAVAIFASYTALNMAGRVAGSARSNARIWL MGGGFALGVGIWAMHFVGMLAMDHAMNMRFDPFLTGLSMLIAIGSSLFALWLVSAEKL RLRRLLPGALVMGLGISAMHYTGMAALQFASIIVWNSAWVALSIIIALLASCGALWLT FRLRHEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLAVLV SVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLLE DRLEQAISKANRENTSFALLFMDLDGFKTVNDAYGHDIGDKLLVAVTHRLNQPLSGQF TLARIGGDEFVLLAEVSAPDEAASLASALVHSIDAPFTIDPYELVVTLSVGIALYPLD GKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLAQTQLQLMNDLWLALERQELRL VYQPKFQAPAGPIVGFEALLRWYHPKQGVLNPDQFLPLAEKTGLIVTIGSWVIDEACR QLREWHLQGYDLWSVAVNLSALQFEQPGLVDTITRSLARHSIRPDLLILEITETTAMN KPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACELKIDRAFVHELSEAGDG ATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFLLGKPRTAEEIARDI RDPANIFTRSIYNINSK" gene complement(3560035..3560712) /gene="envR" /locus_tag="STM3389" /db_xref="GeneID:1254912" CDS complement(3560035..3560697) /gene="envR" /locus_tag="STM3389" /note="TetR/AcrR family; similar to E. coli putative transcriptional regulator (AAC76296.1); Blastp hit to AAC76296.1 (220 aa), 68% identity in aa 1 - 211" /codon_start=1 /transl_table=11 /product="acrEF/envCD operon transcriptional regulator" /protein_id="NP_462299.1" /db_xref="GI:16766684" /db_xref="GeneID:1254912" /translation="MAKKTKADALKTRQHLIETAIAQFALRGVANTTLNDIADAADVT RGAIYWHFENKTQLFNEVWLQQPPLRELIQDRLTGCWNDNPLQDLREKFIAALQYIAA VPRQQALMQILYHKCEFHNGMISEQAIREKMGFHHQSLLEVLQRCMDKKLISGSLDLD VILIILHGSFSGIVKNWLMNPTSYDLYKQAPALVDNVLKMLSPDGSVRQLMPNEQQAE EA" regulatory complement(3560707..3560712) /regulatory_class="ribosome_binding_site" /gene="envR" /locus_tag="STM3389" /note="putative RBS for envR; RegulonDB:STMS1H003397" gene 3561100..3562268 /gene="acrE" /locus_tag="STM3390" /db_xref="GeneID:1254913" regulatory 3561100..3561105 /regulatory_class="ribosome_binding_site" /gene="acrE" /locus_tag="STM3390" /note="putative RBS for acrE; RegulonDB:STMS1H003398" CDS 3561111..3562268 /gene="acrE" /locus_tag="STM3390" /note="similar to E. coli transmembrane protein affects septum formation and cell membrane permeability (AAC76297.1); Blastp hit to AAC76297.1 (385 aa), 88% identity in aa 1 - 380" /codon_start=1 /transl_table=11 /product="multidrug exporter AcrE" /protein_id="NP_462300.1" /db_xref="GI:16766685" /db_xref="GeneID:1254913" /translation="MTKHARFSLLPSFIIFSAALLAGCNDQGDTQAHAGEPQVTVHVV ETAPLAVTTELPGRTSAFRIAEVRPQVSGIVLKRNFTEGSDVEAGQSLYQIDPATYQA DYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVVAAK AAVESARINLAYTKVTSPISGRIGKSNVTEGALVTNGQSTELATVQQLDPIYVDVTQS SNDFMRLKQSVEQGNLHKDSASSTVQLVMENGQVYPIKGTLQFSDVTVDESTGSITLR AVFPNPQHSLLPGMFVRARIDEGVQPNAILVPQQGVTRTPRGDAMVMVVNDKSQVEAR NVVAAQAIGDKWLISEGLKPGDKVIVSGLQKARPGVQVKATTDAPAAKTAQ" gene 3562267..3565393 /gene="acrF" /locus_tag="STM3391" /db_xref="GeneID:1254914" regulatory 3562267..3562272 /regulatory_class="ribosome_binding_site" /gene="acrF" /locus_tag="STM3391" /note="putative RBS for acrF; RegulonDB:STMS1H003399" CDS 3562280..3565393 /gene="acrF" /locus_tag="STM3391" /note="similar to E. coli integral transmembrane protein; acridine resistance (AAC76298.1); Blastp hit to AAC76298.1 (1034 aa), 22% identity in aa 1 - 506" /codon_start=1 /transl_table=11 /product="multidrug efflux RND transporter permease" /protein_id="NP_462301.1" /db_xref="GI:16766686" /db_xref="GeneID:1254914" /translation="MANFFIRRPIFAWVLAIILMMAGALAIMQLPVAQYPTIAPPAVS ISATYPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDI AQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVAS NIKDSISRLNGVGDVQLFGAQYAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQ LGGTPALPGQQLNASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYN VVARINGKPASGLGIKLATGANALDTATAIKVKLAELQPFFPQGMKVVYPYDTTPFVK ISIHEVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINT LTMFGMVLAIGLLVDDAIVVVENVERVMMEDNLSPREATEKSMSQIQGALVGIAMVLS AVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKK SGFFGWFNTRFDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEE DQGVFLTMIQLPSGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSG MAFVSLKPWEERNGEENSVEAVIARATRAFSQIRDGLVFPFNMPAIVELGTATGFDFE LIDQGGLGHDALTKARNQLLGMVAKHPDLLVRVRPNGLEDTPQFKLDVDQEKAQALGV SLSDINETISAALGGYYVNDFIDRGRVKKVYVQADAQFRMLPGDINNLYVRSANGEMV PFSTFSSARWIYGSPRLERYNGMPSMELLGEAAPGRSTGEAMSLMENLASQLPNGIGY DWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA ASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGRGLIEATLEASRMRLR PILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATLLAIFFVPVFFVVVKR RFNRHHD" gene 3565618..3565850 /gene="yhdV" /locus_tag="STM3392" /db_xref="GeneID:1254915" regulatory 3565618..3565623 /regulatory_class="ribosome_binding_site" /gene="yhdV" /locus_tag="STM3392" /note="putative RBS for yhdV; RegulonDB:STMS1H003400" CDS 3565629..3565850 /gene="yhdV" /locus_tag="STM3392" /note="similar to E. coli orf, hypothetical protein (AAC76299.1); Blastp hit to AAC76299.1 (73 aa), 98% identity in aa 1 - 73" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462302.1" /db_xref="GI:16766687" /db_xref="GeneID:1254915" /translation="MKRLIPVALLTTLLAGCAHDSPCVPVYDDQGRLVHTNTCMKGTT QDNWETAGAIAGGAAAVAGLTMGIIALSK" gene complement(3566629..3566750) /gene="rrfF" /locus_tag="STM3393" /db_xref="GeneID:1254916" rRNA complement(3566629..3566750) /gene="rrfF" /locus_tag="STM3393" /product="5S ribosomal RNA" /db_xref="GeneID:1254916" gene complement(3566791..3566863) /gene="thrV" /locus_tag="STM3394" /db_xref="GeneID:1254917" tRNA complement(3566791..3566863) /gene="thrV" /locus_tag="STM3394" /product="tRNA-Thr" /db_xref="GeneID:1254917" gene complement(3566874..3566995) /gene="rrfD" /locus_tag="STM3395" /db_xref="GeneID:1254918" rRNA complement(3566874..3566995) /gene="rrfD" /locus_tag="STM3395" /product="rRNA" /db_xref="GeneID:1254918" gene complement(3567085..3570078) /gene="rrlD" /locus_tag="STM3396" /db_xref="GeneID:1254919" rRNA complement(3567085..3570078) /gene="rrlD" /locus_tag="STM3396" /product="23S ribosomal RNA" /db_xref="GeneID:1254919" gene complement(3570314..3570386) /locus_tag="STM3397" /db_xref="GeneID:1254920" tRNA complement(3570314..3570386) /locus_tag="STM3397" /product="tRNA-Gln" /db_xref="GeneID:1254920" gene complement(3570470..3572013) /gene="rrsD" /locus_tag="STM3398" /db_xref="GeneID:1254921" rRNA complement(3570470..3572013) /gene="rrsD" /locus_tag="STM3398" /product="16S ribosomal RNA" /db_xref="GeneID:1254921" gene 3572480..3573043 /gene="yrdA" /locus_tag="STM3399" /db_xref="GeneID:1254922" regulatory 3572480..3572485 /regulatory_class="ribosome_binding_site" /gene="yrdA" /locus_tag="STM3399" /note="putative RBS for yrdA; RegulonDB:STMS1H003404" CDS 3572489..3573043 /gene="yrdA" /locus_tag="STM3399" /note="similar to E. coli putative transferase (AAC76304.1); Blastp hit to AAC76304.1 (256 aa), 87% identity in aa 73 - 256" /codon_start=1 /transl_table=11 /product="gamma carbonic anhydrase family protein" /protein_id="NP_462303.1" /db_xref="GI:16766688" /db_xref="GeneID:1254922" /translation="MSDTLRPYKNLFPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVV IRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGN RVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLGSPVKQIRPLSDAERSG LQYSANNYVKWKDDYLSQDNHIQP" gene complement(3573019..3573290) /gene="yrdB" /locus_tag="STM3400" /db_xref="GeneID:1254923" CDS complement(3573019..3573276) /gene="yrdB" /locus_tag="STM3400" /note="similar to E. coli orf, hypothetical protein (AAC76305.1); Blastp hit to AAC76305.1 (85 aa), 71% identity in aa 1 - 84" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462304.1" /db_xref="GI:16766689" /db_xref="GeneID:1254923" /translation="MNQAIQFPDREEWDTAASAIIFPALVNGMQLTCAIKKDVLAYRF GGETAEQWLAIFREYRWDLEEEAEALILAQQEDDHGWIWLS" gene complement(3573273..3574104) /gene="aroE" /locus_tag="STM3401" /db_xref="GeneID:1254924" CDS complement(3573273..3574091) /gene="aroE" /locus_tag="STM3401" /EC_number="1.1.1.25" /note="similar to E. coli dehydroshikimate reductase (AAC76306.1); Blastp hit to AAC76306.1 (272 aa), 85% identity in aa 1 - 272" /codon_start=1 /transl_table=11 /product="shikimate dehydrogenase" /protein_id="NP_462305.1" /db_xref="GI:16766690" /db_xref="GeneID:1254924" /translation="METYAVFGNPIAHSKSPFIHQQFAQQLDIVHPYGRVLAPINNFI NTLDAFFAAGGKGANITVPFKEEAFARSDELTERASLAGAVNTLKRLEDGRLLGDNTD GIGLLGDLERLNFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTASRAEALAK IFAHTGSVHATDMDKLDGCEFDLIINATSSGIRGEIPAIPASLIHPSLCCYDMFYQKG NTPFLSWCVQQGAKRYADGLGMLVGQAAHAVLLWHGVLPQVEPVIEQLQQELLA" regulatory complement(3573285..3573290) /regulatory_class="ribosome_binding_site" /gene="yrdB" /locus_tag="STM3400" /note="putative RBS for yrdB; RegulonDB:STMS1H003405" gene complement(3574096..3574681) /gene="yrdC" /locus_tag="STM3402" /db_xref="GeneID:1254925" CDS complement(3574096..3574668) /gene="yrdC" /locus_tag="STM3402" /note="similar to E. coli orf, hypothetical protein (AAC76307.1); Blastp hit to AAC76307.1 (190 aa), 84% identity in aa 1 - 190" /codon_start=1 /transl_table=11 /product="L-threonylcarbamoyladenylate synthase type 1 TsaC" /protein_id="NP_462306.1" /db_xref="GI:16766691" /db_xref="GeneID:1254925" /translation="MNNNLPIGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVT RLLALKQRPVDKGLILIAASFEQLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPAT TPRWLTGRFDSLAVRVTNHPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEVRAQFGD DFPVVEGATGGRLNPSEIRDALTGELFRQG" regulatory complement(3574099..3574104) /regulatory_class="ribosome_binding_site" /gene="yrdC" /locus_tag="STM3402" /note="putative RBS for aroE; RegulonDB:STMS1H003406" gene complement(3574673..3575215) /gene="yrdD" /locus_tag="STM3403" /db_xref="GeneID:1254926" CDS complement(3574673..3575215) /gene="yrdD" /locus_tag="STM3403" /note="similar to E. coli putative DNA topoisomerase (AAC76308.1); Blastp hit to AAC76308.1 (169 aa), 33% identity in aa 3 - 157" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462307.1" /db_xref="GI:16766692" /db_xref="GeneID:1254926" /translation="MAKSALFSVRKNEPCPQCGAELVIRSGKHGPFLGCSRYPECDYV RPLKSQADGHIVKILEGQLCPECGAVLVLRQGRFGMFIGCSQYPQCEHTVVIDKPDET AIACPACQQGHLVQRRSRYGKIFHSCDRYPECQFVINFTPVAGECPECHYPLLIEKKT AQGVKRFCASKQCGKPVPVE" regulatory complement(3574676..3574681) /regulatory_class="ribosome_binding_site" /gene="yrdD" /locus_tag="STM3403" /note="putative RBS for yrdC; RegulonDB:STMS1H003407" gene complement(3575242..3575729) /gene="smg" /locus_tag="STM3404" /db_xref="GeneID:1254927" CDS complement(3575242..3575715) /gene="smg" /locus_tag="STM3404" /note="similar to E. coli orf, hypothetical protein (AAC76309.1); Blastp hit to AAC76309.1 (157 aa), 94% identity in aa 1 - 157" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462308.1" /db_xref="GI:16766693" /db_xref="GeneID:1254927" /translation="MFDVLMYLFETYIHNEAELRVDQDRLERDLTDAGFDREDIYNAL LWLEKLADYQDGLAEPMQLASDPLSMRIYTVEECERLDASCRGFLLFLEQIQVLNLET REMVIERVLALDTAEFDLEDLKWVILMVLFNIPGCENAYQQMEELLFEVNEGMLH" gene complement(3575687..3576826) /gene="smf" /locus_tag="STM3405" /db_xref="GeneID:1254928" CDS complement(3575687..3576811) /gene="smf" /locus_tag="STM3405" /note="similar to E. coli orf, fragment 1 (AAC76311.1); Blastp hit to AAC76311.1 (253 aa), 66% identity in aa 1 - 248" /codon_start=1 /transl_table=11 /product="DNA-protecting protein DprA" /protein_id="NP_462309.1" /db_xref="GI:16766694" /db_xref="GeneID:1254928" /translation="MARTEIWLRLMYVGDLYGEAMLNMANSLIRQPQINRTHLQEAGL TARQAERFLQLPAGVLDETLRWLELPQHHFLCADSEIYPPQLRAIDDYPGAIFIDGDP ACLHTCQLAVVGSRSHSWYGERWGRLLCESLAKSGLTITSGLARGIDGVAHNAAVSMG GKSVAVLGNGLAKIYPRRHAMLAENLIATGGAVVSEFPLSTPPLPQHFPRRNRIISGL SKGVLVIEAALRSGSLVTARCALEQGRDVFALPGPIGSPGSEGTHWLIKQGATLVTTP EDILENLQYGLHWLPTTAENSLYSLNQDEAALPFPELLANVGDEVTPVDVVAERAGQP VPAVVAQLLELELAGWIAAVPGGYVRLRRASHVRRTNVFV" regulatory complement(3575724..3575729) /regulatory_class="ribosome_binding_site" /gene="smg" /locus_tag="STM3404" /note="putative RBS for smg; RegulonDB:STMS1H003408" regulatory complement(3576821..3576826) /regulatory_class="ribosome_binding_site" /gene="smf" /locus_tag="STM3405" /note="putative RBS for smf; RegulonDB:STMS1H003409" gene 3576933..3577452 /gene="def" /locus_tag="STM3406" /db_xref="GeneID:1254929" regulatory 3576933..3576938 /regulatory_class="ribosome_binding_site" /gene="def" /locus_tag="STM3406" /note="putative RBS for def; RegulonDB:STMS1H003410" CDS 3576943..3577452 /gene="def" /locus_tag="STM3406" /EC_number="3.5.1.31" /note="similar to E. coli peptide deformylase (AAC76312.1); Blastp hit to AAC76312.1 (169 aa), 98% identity in aa 1 - 169" /codon_start=1 /transl_table=11 /product="peptide deformylase" /protein_id="NP_462310.1" /db_xref="GI:16766695" /db_xref="GeneID:1254929" /translation="MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEG IGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVP RAEKVKIRALDRDGNPFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVE KLDRLNARA" gene 3577452..3578415 /gene="fmt" /locus_tag="STM3407" /db_xref="GeneID:1254930" regulatory 3577452..3577457 /regulatory_class="ribosome_binding_site" /gene="fmt" /locus_tag="STM3407" /note="putative RBS for fmt; RegulonDB:STMS1H003411" CDS 3577468..3578415 /gene="fmt" /locus_tag="STM3407" /EC_number="2.1.2.9" /note="similar to E. coli 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase (AAC76313.1); Blastp hit to AAC76313.1 (315 aa), 91% identity in aa 1 - 314" /codon_start=1 /transl_table=11 /product="methionyl-tRNA formyltransferase" /protein_id="NP_462311.1" /db_xref="GI:16766696" /db_xref="GeneID:1254930" /translation="MSDSLRIIFAGTPDFAARHLDALLTSGHNVVGVFTQPDRPAGRG KKLMPSPVKVLAEEKGLPVFQPVSLRPQENQHLVADLHADVMVVVAYGLILPKAVLDM PRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLACPIT AEDTSGSLYNKLAELGPQGLITTLKQLADGTATPEAQNEALVTHAEKLSKEEARIDWS LSAAQLERCIRAFNPWPMSWLEIDGQPVKVWQASVIEDATQSLPGTILAATKQGIQVA TGKGILNLLSLQPAGKKAMSAQDLLNSRREWFIPGNRLA" gene 3578467..3579756 /gene="sun" /locus_tag="STM3408" /db_xref="GeneID:1254931" CDS 3578467..3579756 /gene="sun" /locus_tag="STM3408" /note="similar to E. coli orf, hypothetical protein (AAC76314.1); Blastp hit to AAC76314.1 (429 aa), 88% identity in aa 1 - 429" /codon_start=1 /transl_table=11 /product="16S rRNA (cytosine(967)-C(5))-methyltransferase" /protein_id="NP_462312.1" /db_xref="GI:16766697" /db_xref="GeneID:1254931" /translation="MKKQNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALL QELCFGVLRTLSQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAET VEGAVSIKRPQLKGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQ WQHIIEANNQRPPMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVH ALPGFAEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAV DIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQR TPDAALSETGTPDQPGQQNLPGGEEGDGFFYAKLIKK" gene 3579758..3581154 /gene="trkA" /locus_tag="STM3409" /db_xref="GeneID:1254932" regulatory 3579758..3579763 /regulatory_class="ribosome_binding_site" /gene="trkA" /locus_tag="STM3409" /note="putative RBS for trkA; RegulonDB:STMS1H003412" CDS 3579778..3581154 /gene="trkA" /locus_tag="STM3409" /note="TRK system potassium uptake protein TRKA. (SW:TRKA_SALTY)" /codon_start=1 /transl_table=11 /product="Trk system potassium transport protein TrkA" /protein_id="NP_462313.1" /db_xref="GI:16766698" /db_xref="GeneID:1254932" /translation="MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRSLQDKFD LRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSP DYVRDADKLFHSEAVPIDHLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKA YYGGPLIGNALSTMREHMPHIDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHI RAVMSELQRLEKPYKRIMLVGGGNIGAGLARRLEKDYSVKLIERDQQRAAELAEKLQN TIVFFGDASDQELLAEEHIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRA YVDLVQGSVIDIAISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTS RVVGRVIDEIKLPPGTIIGAVVRGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERL FQPSPFFL" gene 3581282..3581709 /gene="mscL" /locus_tag="STM3410" /db_xref="GeneID:1254933" regulatory 3581282..3581287 /regulatory_class="ribosome_binding_site" /gene="mscL" /locus_tag="STM3410" /note="putative RBS for mscL; RegulonDB:STMS1H003413" CDS 3581296..3581709 /gene="mscL" /locus_tag="STM3410" /note="similar to E. coli mechanosensitive channel (AAC76316.1); Blastp hit to AAC76316.1 (136 aa), 92% identity in aa 1 - 136" /codon_start=1 /transl_table=11 /product="large-conductance mechanosensitive channel" /protein_id="NP_462314.1" /db_xref="GI:16766699" /db_xref="GeneID:1254933" /translation="MSFIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPP LGLLIGGIDFKQFAFTLREAQGDIPAVVMHYGVFIQNVFDFVIVAFAIFVAIKLINRL NRKKAEEPAAPPAPSKEEVLLGEIRDLLKEQNNRS" gene complement(3581645..3581914) /locus_tag="STM3411" /db_xref="GeneID:1254934" CDS complement(3581645..3581914) /locus_tag="STM3411" /codon_start=1 /transl_table=11 /product="alternative ribosome-rescue factor A" /protein_id="NP_462315.1" /db_xref="GI:16766700" /db_xref="GeneID:1254934" /translation="MSRYQHKKGQIKDNAIEALLHDPLFRQRVEKNKKGKGSYLRKGK HGNRGNWEASGKKVNHFFTTGLLLIKNGYFVLSADRGFRPITLPL" gene complement(3581972..3582408) /gene="zntR" /locus_tag="STM3412" /db_xref="GeneID:1254935" CDS complement(3581972..3582397) /gene="zntR" /locus_tag="STM3412" /note="MerR family; similar to E. coli putative transcriptional regulator (AAC76317.1); Blastp hit to AAC76317.1 (141 aa), 92% identity in aa 1 - 141" /codon_start=1 /transl_table=11 /product="zinc-responsive transcriptional regulator" /protein_id="NP_462316.1" /db_xref="GI:16766701" /db_xref="GeneID:1254935" /translation="MYRIGELAKLADVTPDTIRYYEKQQMMDHEVRTEGGFRLYTEND LQRLKFIRYARQLGFTLDSIRELLSIRIDPEHHTCQESKSIVQERLQEVEARIAELQT MQRSLQRLNDACCGTAHSSVYCSILEALEQGASGAKSGC" regulatory complement(3582403..3582408) /regulatory_class="ribosome_binding_site" /gene="zntR" /locus_tag="STM3412" /note="putative RBS for zntR; RegulonDB:STMS1H003414" gene complement(3582408..3582788) /gene="yhdN" /locus_tag="STM3413" /db_xref="GeneID:1254936" CDS complement(3582408..3582776) /gene="yhdN" /locus_tag="STM3413" /note="similar to E. coli orf, hypothetical protein (AAC76318.1); Blastp hit to AAC76318.1 (122 aa), 86% identity in aa 1 - 122" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462317.1" /db_xref="GI:16766702" /db_xref="GeneID:1254936" /translation="MWLLDQWAERHIIEAQRKGEFDNLPGRGEPLILDDDSHVPAELR AGYRLLKNAGCLPPELEQRRDAIQLLDILNSIREDDPRYHQVSRQLSLLELKLRQAGL STDFLHGEYAEKLLHKINDN" regulatory complement(3582783..3582788) /regulatory_class="ribosome_binding_site" /gene="yhdN" /locus_tag="STM3413" /note="putative RBS for yhdN; RegulonDB:STMS1H003415" gene complement(3582884..3583279) /gene="rplQ" /locus_tag="STM3414" /db_xref="GeneID:1254937" CDS complement(3582884..3583267) /gene="rplQ" /locus_tag="STM3414" /note="similar to E. coli 50S ribosomal subunit protein L17 (AAC76319.1); Blastp hit to AAC76319.1 (127 aa), 99% identity in aa 1 - 127" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L17" /protein_id="NP_462318.1" /db_xref="GI:16766703" /db_xref="GeneID:1254937" /translation="MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKEL RRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGF RAGDNAPMAYIELVDRSEKTEAAAE" regulatory complement(3583274..3583279) /regulatory_class="ribosome_binding_site" /gene="rplQ" /locus_tag="STM3414" /note="putative RBS for rplQ; RegulonDB:STMS1H003416" gene complement(3583308..3584306) /gene="rpoA" /locus_tag="STM3415" /db_xref="GeneID:1254938" CDS complement(3583308..3584297) /gene="rpoA" /locus_tag="STM3415" /EC_number="2.7.7.6" /note="DNA-directed RNA polymerase alpha chain. (SW:RPOA_ECOLI)" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase subunit alpha" /protein_id="NP_462319.1" /db_xref="GI:16766704" /db_xref="GeneID:1254938" /translation="MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALR RILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTL NKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIH SEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIR RAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIH YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIADE" regulatory complement(3584301..3584306) /regulatory_class="ribosome_binding_site" /gene="rpoA" /locus_tag="STM3415" /note="putative RBS for rpoA; RegulonDB:STMS1H003417" gene complement(3584323..3584956) /gene="rpsD" /locus_tag="STM3416" /db_xref="GeneID:1254939" CDS complement(3584323..3584943) /gene="rpsD" /locus_tag="STM3416" /note="30S ribosomal protein S4. (SW:RS4_SALTY)" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S4" /protein_id="NP_462320.1" /db_xref="GI:16766705" /db_xref="GeneID:1254939" /translation="MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR KPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVV YRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE LAEQREKPTWLEVDAGKMEGTYKRKPERSDLSADINEHLIVELYSK" regulatory complement(3584951..3584956) /regulatory_class="ribosome_binding_site" /gene="rpsD" /locus_tag="STM3416" /note="putative RBS for rpsD; RegulonDB:STMS1H003418" gene complement(3584977..3585382) /gene="rpsK" /locus_tag="STM3417" /db_xref="GeneID:1254940" CDS complement(3584977..3585366) /gene="rpsK" /locus_tag="STM3417" /note="similar to E. coli 30S ribosomal subunit protein S11 (AAC76322.1); Blastp hit to AAC76322.1 (129 aa), 99% identity in aa 1 - 129" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S11" /protein_id="NP_462321.1" /db_xref="GI:16766706" /db_xref="GeneID:1254940" /translation="MAKAPVRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGW ATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNA AGFRITNITDVTPIPHNGCRPPKKRRV" regulatory complement(3585377..3585382) /regulatory_class="ribosome_binding_site" /gene="rpsK" /locus_tag="STM3417" /note="putative RBS for rpsK; RegulonDB:STMS1H003419" gene complement(3585383..3585751) /gene="rpsM" /locus_tag="STM3418" /db_xref="GeneID:1254941" CDS complement(3585383..3585739) /gene="rpsM" /locus_tag="STM3418" /note="similar to E. coli 30S ribosomal subunit protein S13 (AAC76323.1); Blastp hit to AAC76323.1 (118 aa), 96% identity in aa 1 - 118" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S13" /protein_id="NP_462322.1" /db_xref="GI:16766707" /db_xref="GeneID:1254941" /translation="MARIAGINIPDQKHAVIALTSIYGVGKTRSKAILAAAGIAENVK ISELSEEQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRT KTNARTRKGPRKPIKK" regulatory complement(3585746..3585751) /regulatory_class="ribosome_binding_site" /gene="rpsM" /locus_tag="STM3418" /note="putative RBS for rpsM; RegulonDB:STMS1H003420" gene complement(3585886..3586015) /gene="rpmJ" /locus_tag="STM3419" /db_xref="GeneID:1254942" CDS complement(3585886..3586002) /gene="rpmJ" /locus_tag="STM3419" /note="similar to E. coli 50S ribosomal subunit protein L36 (AAC76324.1); Blastp hit to AAC76324.1 (38 aa), 100% identity in aa 1 - 38" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L36" /protein_id="NP_462323.1" /db_xref="GI:16766708" /db_xref="GeneID:1254942" /translation="MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG" regulatory complement(3586010..3586015) /regulatory_class="ribosome_binding_site" /gene="rpmJ" /locus_tag="STM3419" /note="putative RBS for rpmJ; RegulonDB:STMS1H003421" gene complement(3586034..3587381) /gene="secY" /locus_tag="STM3420" /db_xref="GeneID:1254943" CDS complement(3586034..3587365) /gene="secY" /locus_tag="STM3420" /note="membrane subunit; putative ATPase; similar to E. coli putative ATPase subunit of translocase (AAC76325.1); Blastp hit to AAC76325.1 (443 aa), 99% identity in aa 1 - 443" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit SecY" /protein_id="NP_462324.1" /db_xref="GI:16766709" /db_xref="GeneID:1254943" /translation="MAKQPGLDFQSAKGGLGELKRRLLFVIGALIVFRIGSFIPIPGI DAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQLLTVVHPTL AEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVMNPGFAFYFTA VVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFL VLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIP AIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPLYVLLYASAIIFFCFFYTA LVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMR DAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKANLKGYGR" gene complement(3587373..3587819) /gene="rplO" /locus_tag="STM3421" /db_xref="GeneID:1254944" CDS complement(3587373..3587807) /gene="rplO" /locus_tag="STM3421" /note="similar to E. coli 50S ribosomal subunit protein L15 (AAC76326.1); Blastp hit to AAC76326.1 (144 aa), 99% identity in aa 1 - 144" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L15" /protein_id="NP_462325.1" /db_xref="GI:16766710" /db_xref="GeneID:1254944" /translation="MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGG GVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIG IQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE" regulatory complement(3587376..3587381) /regulatory_class="ribosome_binding_site" /gene="rplO" /locus_tag="STM3421" /note="putative RBS for secY; RegulonDB:STMS1H003422" gene complement(3587811..3588005) /gene="rpmD" /locus_tag="STM3422" /db_xref="GeneID:1254945" CDS complement(3587811..3587990) /gene="rpmD" /locus_tag="STM3422" /note="similar to E. coli 50S ribosomal subunit protein L30 (AAC76327.1); Blastp hit to AAC76327.1 (59 aa), 96% identity in aa 1 - 59" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L30" /protein_id="NP_462326.1" /db_xref="GI:16766711" /db_xref="GeneID:1254945" /translation="MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAV RGMVNAVSFMVKVEE" regulatory complement(3587814..3587819) /regulatory_class="ribosome_binding_site" /gene="rpmD" /locus_tag="STM3422" /note="putative RBS for rplO; RegulonDB:STMS1H003423" gene complement(3587994..3588507) /gene="rpsE" /locus_tag="STM3423" /db_xref="GeneID:1254946" CDS complement(3587994..3588497) /gene="rpsE" /locus_tag="STM3423" /note="30S ribosomal protein S5. (SW:RS5_SALTY)" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S5" /protein_id="NP_462327.1" /db_xref="GI:16766712" /db_xref="GeneID:1254946" /translation="MAHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNG RVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEG TGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKS VEEILGK" regulatory complement(3588000..3588005) /regulatory_class="ribosome_binding_site" /gene="rpmD" /locus_tag="STM3422" /note="putative RBS for rpmD; RegulonDB:STMS1H003424" regulatory complement(3588502..3588507) /regulatory_class="ribosome_binding_site" /gene="rpsE" /locus_tag="STM3423" /note="putative RBS for rpsE; RegulonDB:STMS1H003425" gene complement(3588512..3588876) /gene="rplR" /locus_tag="STM3424" /db_xref="GeneID:1254947" CDS complement(3588512..3588865) /gene="rplR" /locus_tag="STM3424" /note="similar to E. coli 50S ribosomal subunit protein L18 (AAC76329.1); Blastp hit to AAC76329.1 (117 aa), 99% identity in aa 1 - 117" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L18" /protein_id="NP_462328.1" /db_xref="GI:16766713" /db_xref="GeneID:1254947" /translation="MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNG SEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGR VQALADAAREAGLQF" regulatory complement(3588871..3588876) /regulatory_class="ribosome_binding_site" /gene="rplR" /locus_tag="STM3424" /note="putative RBS for rplR; RegulonDB:STMS1H003426" gene complement(3588875..3589417) /gene="rplF" /locus_tag="STM3425" /db_xref="GeneID:1254948" CDS complement(3588875..3589408) /gene="rplF" /locus_tag="STM3425" /note="similar to E. coli 50S ribosomal subunit protein L6 (AAC76330.1); Blastp hit to AAC76330.1 (177 aa), 98% identity in aa 1 - 177" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L6" /protein_id="NP_462329.1" /db_xref="GI:16766714" /db_xref="GeneID:1254948" /translation="MSRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVK HADNALTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNV VNLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGK GVRYADEVVRTKEAKKK" regulatory complement(3589412..3589417) /regulatory_class="ribosome_binding_site" /gene="rplF" /locus_tag="STM3425" /note="putative RBS for rplF; RegulonDB:STMS1H003427" gene complement(3589421..3589829) /gene="rpsH" /locus_tag="STM3426" /db_xref="GeneID:1254949" CDS complement(3589421..3589813) /gene="rpsH" /locus_tag="STM3426" /note="similar to E. coli 30S ribosomal subunit protein S8, and regulator (AAC76331.1); Blastp hit to AAC76331.1 (130 aa), 100% identity in aa 1 - 130" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S8" /protein_id="NP_462330.1" /db_xref="GI:16766715" /db_xref="GeneID:1254949" /translation="MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEG FIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIA VVSTSKGVMTDRAARQAGLGGEIICYVA" regulatory complement(3589824..3589829) /regulatory_class="ribosome_binding_site" /gene="rpsH" /locus_tag="STM3426" /note="putative RBS for rpsH; RegulonDB:STMS1H003428" gene complement(3589847..3590168) /gene="rpsN" /locus_tag="STM3427" /db_xref="GeneID:1254950" CDS complement(3589847..3590152) /gene="rpsN" /locus_tag="STM3427" /note="similar to E. coli 30S ribosomal subunit protein S14 (AAC76332.1); Blastp hit to AAC76332.1 (101 aa), 98% identity in aa 1 - 101" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S14" /protein_id="NP_462331.3" /db_xref="GI:308065942" /db_xref="GeneID:1254950" /translation="MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNATDEDRWNA VLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW" regulatory complement(3590163..3590168) /regulatory_class="ribosome_binding_site" /gene="rpsN" /locus_tag="STM3427" /note="putative RBS for rpsN; RegulonDB:STMS1H003429" gene complement(3590167..3590719) /gene="rplE" /locus_tag="STM3428" /db_xref="GeneID:1254951" CDS complement(3590167..3590706) /gene="rplE" /locus_tag="STM3428" /note="50S ribosomal protein L5. (SW:RL5_SALTY)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L5" /protein_id="NP_462332.1" /db_xref="GI:16766717" /db_xref="GeneID:1254951" /translation="MAKLHDYYKDEVVNKLMTEFNYNSVMQVPRVEKITLNMGVGEAI ADKKLLDNAAADLTAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFER LITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTA KSDEEGRALLAAFDFPFRK" regulatory complement(3590714..3590719) /regulatory_class="ribosome_binding_site" /gene="rplE" /locus_tag="STM3428" /note="putative RBS for rplE; RegulonDB:STMS1H003430" gene complement(3590721..3591047) /gene="rplX" /locus_tag="STM3429" /db_xref="GeneID:1254952" CDS complement(3590721..3591035) /gene="rplX" /locus_tag="STM3429" /note="50S ribosomal protein L24. (SW:RL24_SALTY)" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L24" /protein_id="NP_462333.1" /db_xref="GI:16766718" /db_xref="GeneID:1254952" /translation="MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKK HQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSET IK" regulatory complement(3591042..3591047) /regulatory_class="ribosome_binding_site" /gene="rplX" /locus_tag="STM3429" /note="putative RBS for rplX; RegulonDB:STMS1H003431" gene complement(3591046..3591430) /gene="rplN" /locus_tag="STM3430" /db_xref="GeneID:1254953" CDS complement(3591046..3591417) /gene="rplN" /locus_tag="STM3430" /note="similar to E. coli 50S ribosomal subunit protein L14 (AAC76335.1); Blastp hit to AAC76335.1 (123 aa), 98% identity in aa 1 - 123" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L14" /protein_id="NP_462334.1" /db_xref="GI:16766719" /db_xref="GeneID:1254953" /translation="MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIK EAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVILNNNSEQPIGTRIFGP VTRELRNEKFMKIISLAPEVL" regulatory complement(3591425..3591430) /regulatory_class="ribosome_binding_site" /gene="rplN" /locus_tag="STM3430" /note="putative RBS for rplN; RegulonDB:STMS1H003432" gene complement(3591581..3591849) /gene="rpsQ" /locus_tag="STM3431" /db_xref="GeneID:1254954" CDS complement(3591581..3591835) /gene="rpsQ" /locus_tag="STM3431" /note="similar to E. coli 30S ribosomal subunit protein S17 (AAC76336.1); Blastp hit to AAC76336.1 (84 aa), 98% identity in aa 1 - 84" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S17" /protein_id="NP_462335.1" /db_xref="GI:16766720" /db_xref="GeneID:1254954" /translation="MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKM HVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL" gene complement(3591835..3592037) /gene="rpmC" /locus_tag="STM3432" /db_xref="GeneID:1254955" CDS complement(3591835..3592026) /gene="rpmC" /locus_tag="STM3432" /note="similar to E. coli 50S ribosomal subunit protein L29 (AAC76337.1); Blastp hit to AAC76337.1 (63 aa), 98% identity in aa 1 - 63" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L29" /protein_id="NP_462336.1" /db_xref="GI:16766721" /db_xref="GeneID:1254955" /translation="MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLK QVRRDVARVKTLLTEKAGA" regulatory complement(3591844..3591849) /regulatory_class="ribosome_binding_site" /gene="rpmC" /locus_tag="STM3432" /note="putative RBS for rpsQ; RegulonDB:STMS1H003433" gene complement(3592026..3592450) /gene="rplP" /locus_tag="STM3433" /db_xref="GeneID:1254956" CDS complement(3592026..3592436) /gene="rplP" /locus_tag="STM3433" /note="similar to E. coli 50S ribosomal subunit protein L16 (AAC76338.1); Blastp hit to AAC76338.1 (136 aa), 98% identity in aa 1 - 136" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L16" /protein_id="NP_462337.1" /db_xref="GI:16766722" /db_xref="GeneID:1254956" /translation="MLQPKRTKFRKMHKGRNRGLAAGADVSFGSFGLKAVGRGRLTAR QIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVL YEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM" regulatory complement(3592032..3592037) /regulatory_class="ribosome_binding_site" /gene="rpmC" /locus_tag="STM3432" /note="putative RBS for rpmC; RegulonDB:STMS1H003434" regulatory complement(3592445..3592450) /regulatory_class="ribosome_binding_site" /gene="rplP" /locus_tag="STM3433" /note="putative RBS for rplP; RegulonDB:STMS1H003435" gene complement(3592449..3593163) /gene="rpsC" /locus_tag="STM3434" /db_xref="GeneID:1254957" CDS complement(3592449..3593150) /gene="rpsC" /locus_tag="STM3434" /note="similar to E. coli 30S ribosomal subunit protein S3 (AAC76339.1); Blastp hit to AAC76339.1 (233 aa), 100% identity in aa 1 - 233" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S3" /protein_id="NP_462338.1" /db_xref="GI:16766723" /db_xref="GeneID:1254957" /translation="MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLT KELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN IAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGA EIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPE KPAAQPKKQQRKGRK" regulatory complement(3593158..3593163) /regulatory_class="ribosome_binding_site" /gene="rpsC" /locus_tag="STM3434" /note="putative RBS for rpsC; RegulonDB:STMS1H003436" gene complement(3593168..3593509) /gene="rplV" /locus_tag="STM3435" /db_xref="GeneID:1254958" CDS complement(3593168..3593500) /gene="rplV" /locus_tag="STM3435" /note="similar to E. coli 50S ribosomal subunit protein L22 (AAC76340.1); Blastp hit to AAC76340.1 (110 aa), 100% identity in aa 1 - 110" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L22" /protein_id="NP_462339.1" /db_xref="GI:16766724" /db_xref="GeneID:1254958" /translation="METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAA VLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSH ITVVVSDR" regulatory complement(3593504..3593509) /regulatory_class="ribosome_binding_site" /gene="rplV" /locus_tag="STM3435" /note="putative RBS for rplV; RegulonDB:STMS1H003437" gene complement(3593515..3593804) /gene="rpsS" /locus_tag="STM3436" /db_xref="GeneID:1254959" CDS complement(3593515..3593793) /gene="rpsS" /locus_tag="STM3436" /note="similar to E. coli 30S ribosomal subunit protein S19 (AAC76341.1); Blastp hit to AAC76341.1 (92 aa), 98% identity in aa 1 - 92" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S19" /protein_id="NP_462340.1" /db_xref="GI:16766725" /db_xref="GeneID:1254959" /translation="MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNM IGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK" regulatory complement(3593799..3593804) /regulatory_class="ribosome_binding_site" /gene="rpsS" /locus_tag="STM3436" /note="putative RBS for rpsS; RegulonDB:STMS1H003438" gene complement(3593810..3594644) /gene="rplB" /locus_tag="STM3437" /db_xref="GeneID:1254960" CDS complement(3593810..3594631) /gene="rplB" /locus_tag="STM3437" /note="similar to E. coli 50S ribosomal subunit protein L2 (AAC76342.1); Blastp hit to AAC76342.1 (273 aa), 99% identity in aa 1 - 273" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L2" /protein_id="NP_462341.1" /db_xref="GI:16766726" /db_xref="GeneID:1254960" /translation="MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLVEKNSKSGGRN NNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERR YILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGT YVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRP TVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSK" regulatory complement(3594639..3594644) /regulatory_class="ribosome_binding_site" /gene="rplB" /locus_tag="STM3437" /note="putative RBS for rplB; RegulonDB:STMS1H003439" gene complement(3594649..3594965) /gene="rplW" /locus_tag="STM3438" /db_xref="GeneID:1254961" CDS complement(3594649..3594951) /gene="rplW" /locus_tag="STM3438" /note="similar to E. coli 50S ribosomal subunit protein L23 (AAC76343.1); Blastp hit to AAC76343.1 (100 aa), 99% identity in aa 1 - 100" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L23" /protein_id="NP_462342.1" /db_xref="GI:16766727" /db_xref="GeneID:1254961" /translation="MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIK AAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE" gene complement(3594948..3595565) /gene="rplD" /locus_tag="STM3439" /db_xref="GeneID:1254962" CDS complement(3594948..3595553) /gene="rplD" /locus_tag="STM3439" /note="regulates expression of S10 operon; similar to E. coli 50S ribosomal subunit protein L4, regulates expression of S10 operon (AAC76344.1); Blastp hit to AAC76344.1 (201 aa), 100% identity in aa 1 - 201" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L4" /protein_id="NP_462343.1" /db_xref="GI:16766728" /db_xref="GeneID:1254962" /translation="MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTR AQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYR GALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDENLFLA ARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA" regulatory complement(3594960..3594965) /regulatory_class="ribosome_binding_site" /gene="rplW" /locus_tag="STM3438" /note="putative RBS for rplW; RegulonDB:STMS1H003440" regulatory complement(3595560..3595565) /regulatory_class="ribosome_binding_site" /gene="rplD" /locus_tag="STM3439" /note="putative RBS for rplD; RegulonDB:STMS1H003441" gene complement(3595564..3596205) /gene="rplC" /locus_tag="STM3440" /db_xref="GeneID:1254963" CDS complement(3595564..3596193) /gene="rplC" /locus_tag="STM3440" /note="similar to E. coli 50S ribosomal subunit protein L3 (AAC76345.1); Blastp hit to AAC76345.1 (209 aa), 98% identity in aa 1 - 209" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L3" /protein_id="NP_462344.1" /db_xref="GI:16766729" /db_xref="GeneID:1254963" /translation="MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDG YRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEYTVGQSISVELFA DVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKK MAGQMGNERVTVQSLDVVRVDAERNLLLVKGGVPGATGCDLIVKPAVKA" regulatory complement(3596200..3596205) /regulatory_class="ribosome_binding_site" /gene="rplC" /locus_tag="STM3440" /note="putative RBS for rplC; RegulonDB:STMS1H003442" gene complement(3596226..3596553) /gene="rpsJ" /locus_tag="STM3441" /db_xref="GeneID:1254964" CDS complement(3596226..3596537) /gene="rpsJ" /locus_tag="STM3441" /note="similar to E. coli 30S ribosomal subunit protein S10 (AAC76346.1); Blastp hit to AAC76346.1 (103 aa), 98% identity in aa 1 - 103" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S10" /protein_id="NP_462345.1" /db_xref="GI:16766730" /db_xref="GeneID:1254964" /translation="MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPT RKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISL G" regulatory complement(3596548..3596553) /regulatory_class="ribosome_binding_site" /gene="rpsJ" /locus_tag="STM3441" /note="putative RBS for rpsJ; RegulonDB:STMS1H003443" gene 3596910..3597384 /gene="hopD" /locus_tag="STM3442" /db_xref="GeneID:1254965" regulatory 3596910..3596915 /regulatory_class="ribosome_binding_site" /gene="hopD" /locus_tag="STM3442" /note="putative RBS for hopD; RegulonDB:STMS1H003444" CDS 3596917..3597384 /gene="hopD" /locus_tag="STM3442" /note="similar to E. coli leader peptidase, integral membrane protein (AAC76360.1); Blastp hit to AAC76360.1 (225 aa), 47% identity in aa 80 - 215" /codon_start=1 /transl_table=11 /product="prepilin peptidase" /protein_id="NP_462346.1" /db_xref="GI:16766731" /db_xref="GeneID:1254965" /translation="MFVALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYH QICLPERLPDALWGAIAGYGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETL PLLVFLAAMLACGGFGVALLVRGKSALINPLPFGPWLAVAGFITGWKVFFPDG" gene complement(3597381..3597873) /gene="bfr" /locus_tag="STM3443" /db_xref="GeneID:1254966" CDS complement(3597381..3597857) /gene="bfr" /locus_tag="STM3443" /note="iron storage homoprotein; bacterioferritin (BFR) (cytochrome B-1) (cytochrome B-557). (SW:BFR_SALTY)" /codon_start=1 /transl_table=11 /product="bacterioferritin" /protein_id="NP_462347.1" /db_xref="GI:16766732" /db_xref="GeneID:1254966" /translation="MKGDVKIINYLNKLLGNELVAINQYFLHARMFKNWGLTRLNDVE YHESIDEMKHADKYIERILFLEGIPNLQDLGKLGIGEDVEEMLRSDLRLELEGAKDLR EAIAYADSVHDYVSRDMMIEILADEEGHIDWLETELDLIAKLGMQNYLQSQIKVTD" regulatory complement(3597868..3597873) /regulatory_class="ribosome_binding_site" /gene="bfr" /locus_tag="STM3443" /note="putative RBS for bfr; RegulonDB:STMS1H003445" gene complement(3597930..3598136) /gene="bfd" /locus_tag="STM3444" /db_xref="GeneID:1254967" CDS complement(3597930..3598124) /gene="bfd" /locus_tag="STM3444" /note="iron storage and mobilitybacterioferritin-associated ferredoxin. (SW:BFD_SALTY)" /codon_start=1 /transl_table=11 /product="bacterioferritin-associated ferredoxin" /protein_id="NP_462348.1" /db_xref="GI:16766733" /db_xref="GeneID:1254967" /translation="MYVCLCNGISDKKIRQAVRQFHPQSFQQLRKFIPVGNQCGKCIR AAREVMQDELTQMPEFKEIA" regulatory complement(3598131..3598136) /regulatory_class="ribosome_binding_site" /gene="bfd" /locus_tag="STM3444" /note="putative RBS for bfd; RegulonDB:STMS1H003446" gene complement(3598309..3599500) /gene="tufA" /locus_tag="STM3445" /db_xref="GeneID:1254968" CDS complement(3598309..3599493) /gene="tufA" /locus_tag="STM3445" /EC_number="3.6.5.3" /note="elongation factor TU (EF-TU); duplicate of tufB; (SW:EFTU_SALTY)" /codon_start=1 /transl_table=11 /product="translation elongation factor Tu" /protein_id="NP_462349.1" /db_xref="GI:16766734" /db_xref="GeneID:1254968" /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA RAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGA ILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ YDFPGDDTPIVRGSALKALEGDAEWEAKIIELAGFLDSYIPEPERAIDKPFLLPIEDV FSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVG VLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFR TTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKV LG" regulatory complement(3599495..3599500) /regulatory_class="ribosome_binding_site" /gene="tufA" /locus_tag="STM3445" /note="putative RBS for tufA; RegulonDB:STMS1H003447" gene complement(3599565..3601689) /gene="fusA" /locus_tag="STM3446" /db_xref="GeneID:1254969" CDS complement(3599565..3601679) /gene="fusA" /locus_tag="STM3446" /EC_number="3.6.5.3" /note="GTP-binding; elongation factor G (EF-G). (SW:EFG_SALTY)" /codon_start=1 /transl_table=11 /product="translation elongation factor G" /protein_id="NP_462350.1" /db_xref="GI:16766735" /db_xref="GeneID:1254969" /translation="MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH DGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERS MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVGQIKT RLGANPVPLQLAIGAEEGFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMQDLANEW HQNLIESAAEASEELMEKYLGGEELTEEEIKQALRQRVLNNEIILVTCGSAFKNKGVQ AMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLT FFRVYSGVVNSGDTVLNSVKTARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVT TGDTLCDPENPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTD EESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYREAIRAKVTDIEGKHAKQ SGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKSGPL AGYPVVDLGVRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETP EENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTM EFLKYDDAPNNVAQAVIEARGK" regulatory complement(3601684..3601689) /regulatory_class="ribosome_binding_site" /gene="fusA" /locus_tag="STM3446" /note="putative RBS for fusA; RegulonDB:STMS1H003448" gene complement(3601776..3602259) /gene="rpsG" /locus_tag="STM3447" /db_xref="GeneID:1254970" CDS complement(3601776..3602246) /gene="rpsG" /locus_tag="STM3447" /note="initiates assembly; (SW:RS7_SALTY)" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S7" /protein_id="NP_462351.1" /db_xref="GI:16766736" /db_xref="GeneID:1254970" /translation="MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVY SALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMR WIVEAARKRGDKSMALRLANELSDAADNKGTAVKKREDVHRMAEANKAFAHYRW" regulatory complement(3602254..3602259) /regulatory_class="ribosome_binding_site" /gene="rpsG" /locus_tag="STM3447" /note="putative RBS for rpsG; RegulonDB:STMS1H003449" gene complement(3602342..3602729) /gene="rpsL" /locus_tag="STM3448" /db_xref="GeneID:1254971" CDS complement(3602342..3602716) /gene="rpsL" /locus_tag="STM3448" /note="30S ribosomal protein S12. (SW:RS12_ECOLI)" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S12" /protein_id="NP_462352.1" /db_xref="GI:16766737" /db_xref="GeneID:1254971" /translation="MATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKK PNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGAL DCSGVKDRKQARSKYGVKRPKA" regulatory complement(3602724..3602729) /regulatory_class="ribosome_binding_site" /gene="rpsL" /locus_tag="STM3448" /note="putative RBS for rpsL; RegulonDB:STMS1H003450" gene complement(3602842..3603138) /gene="yheL" /locus_tag="STM3449" /db_xref="GeneID:1254972" CDS complement(3602842..3603129) /gene="yheL" /locus_tag="STM3449" /note="similar to E. coli orf, hypothetical protein (AAC76368.1); Blastp hit to AAC76368.1 (95 aa), 68% identity in aa 1 - 95" /codon_start=1 /transl_table=11 /product="sulfurtransferase TusB" /protein_id="NP_462353.1" /db_xref="GI:16766738" /db_xref="GeneID:1254972" /translation="MLHTLPHCASSVDFPALLRLLKEGDALLLLQDGVTVAIEGNRFL ESLRDAPITVYALKEDIDARGLGGQISDSVVRVDYTEFVRLTVKYANQMAW" regulatory complement(3603133..3603138) /regulatory_class="ribosome_binding_site" /gene="yheL" /locus_tag="STM3449" /note="putative RBS for yheL; RegulonDB:STMS1H003451" gene complement(3603137..3603507) /gene="yheM" /locus_tag="STM3450" /db_xref="GeneID:1254973" CDS complement(3603137..3603493) /gene="yheM" /locus_tag="STM3450" /note="similar to E. coli orf, hypothetical protein (AAC76369.1); Blastp hit to AAC76369.1 (119 aa), 84% identity in aa 1 - 119" /codon_start=1 /transl_table=11 /product="sulfurtransferase TusC" /protein_id="NP_462354.1" /db_xref="GI:16766739" /db_xref="GeneID:1254973" /translation="MKRIAFVFSTAPHGSASGREGLDALLATSALTEALGVFFISDGV FQLLPGQKPDAVLARDYIATFKLFDLYDIDQCWICAASLRERGLENINFVVDATPLEP VALRRELGNYDVILRF" gene complement(3603493..3603890) /gene="yheN" /locus_tag="STM3451" /db_xref="GeneID:1254974" CDS complement(3603493..3603879) /gene="yheN" /locus_tag="STM3451" /note="similar to E. coli orf, hypothetical protein (AAC76370.1); Blastp hit to AAC76370.1 (128 aa), 85% identity in aa 1 - 128" /codon_start=1 /transl_table=11 /product="sulfurtransferase TusD" /protein_id="NP_462355.1" /db_xref="GI:16766740" /db_xref="GeneID:1254974" /translation="MRYAIMVTGPAYGTQQASSALQFAHALLNEGHELASVFFYREGV YNANLLTSPASDEYDLVRAWQKLNTQHGVALNICVAAALRRGIIDETEAGRLALPSAN LQPGFTLSGLGALAEASLTCDRVVQF" regulatory complement(3603502..3603507) /regulatory_class="ribosome_binding_site" /gene="yheM" /locus_tag="STM3450" /note="putative RBS for yheM; RegulonDB:STMS1H003452" gene complement(3603879..3604618) /gene="yheO" /locus_tag="STM3452" /db_xref="GeneID:1254975" CDS complement(3603879..3604601) /gene="yheO" /locus_tag="STM3452" /note="similar to E. coli orf, hypothetical protein (AAC76371.1); Blastp hit to AAC76371.1 (244 aa), 97% identity in aa 5 - 244" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462356.1" /db_xref="GI:16766741" /db_xref="GeneID:1254975" /translation="MSRSLLTNETSELDLLDQRPFEQTDFDILKSYEAVVDGLAMLIG SHCEIVLHSLQDLKCSAIRIANGEHTGRKIGSPITDLALRMLHDMTGADSSVSKCYFT RAKSGVLMKSLTIAIRNREQRVIGLLCINMNLDVPFSQIMNTFIPPETPEVGSAVNFA SSVEDLVTQTLEFTIEEVNADRNVSNNAKNRQIVLNLYEKGIFDIKDAINQVADRLNI SKHTVYLYIRQFKSGDFQGQDK" regulatory complement(3603885..3603890) /regulatory_class="ribosome_binding_site" /gene="yheN" /locus_tag="STM3451" /note="putative RBS for yheN; RegulonDB:STMS1H003453" regulatory complement(3604613..3604618) /regulatory_class="ribosome_binding_site" /gene="yheO" /locus_tag="STM3452" /note="putative RBS for yheO; RegulonDB:STMS1H003454" gene complement(3604878..3605708) /gene="fkpA" /locus_tag="STM3453" /db_xref="GeneID:1254976" CDS complement(3604878..3605696) /gene="fkpA" /locus_tag="STM3453" /EC_number="5.2.1.8" /note="similar to E. coli FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (AAC76372.1); Blastp hit to AAC76372.1 (270 aa), 90% identity in aa 1 - 270" /codon_start=1 /transl_table=11 /product="FKBP-type peptidyl-prolyl cis-trans isomerase FkpA" /protein_id="NP_462357.1" /db_xref="GI:16766742" /db_xref="GeneID:1254976" /translation="MKSLFKATLLATTMAVAMHAPITFAADAAKPAATADSKAAFKND DQKAAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTL QTFEARVKSAAQAKMEKDAADNEAKGKTFRDAFAKEKGVKTSSTGLLYKVEKEGTGEA PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLV IPPELAYGKTGVPGIPANSTLVFDVELLDIKPAPKADAKPADAADAKAADAAKK" regulatory complement(3605703..3605708) /regulatory_class="ribosome_binding_site" /gene="fkpA" /locus_tag="STM3453" /note="putative RBS for fkpA; RegulonDB:STMS1H003455" gene 3605906..3606134 /gene="slyX" /locus_tag="STM3454" /db_xref="GeneID:1254977" regulatory 3605906..3605911 /regulatory_class="ribosome_binding_site" /gene="slyX" /locus_tag="STM3454" /note="putative RBS for slyX; RegulonDB:STMS1H003456" CDS 3605916..3606134 /gene="slyX" /locus_tag="STM3454" /note="similar to E. coli host factor for lysis of phiX174 infection (AAC76373.1); Blastp hit to AAC76373.1 (72 aa), 94% identity in aa 1 - 72" /codon_start=1 /transl_table=11 /product="lysis protein" /protein_id="NP_462358.1" /db_xref="GI:16766743" /db_xref="GeneID:1254977" /translation="MQDITMEARLAELESRLAFQEITIEELNLTVTAHEMEMAKLRDH LRLLTEKLKASQPSNIASQAEETPPPHY" gene complement(3606322..3606923) /gene="slyD" /locus_tag="STM3455" /db_xref="GeneID:1254978" CDS complement(3606322..3606912) /gene="slyD" /locus_tag="STM3455" /EC_number="5.2.1.8" /note="similar to E. coli FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (AAC76374.1); Blastp hit to AAC76374.1 (196 aa), 97% identity in aa 1 - 196" /codon_start=1 /transl_table=11 /product="peptidylprolyl isomerase" /protein_id="NP_462359.1" /db_xref="GI:16766744" /db_xref="GeneID:1254978" /translation="MKVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISG LETALEGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQ GPVPVEITEVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHH DHGEDGCCGGHGHDHGHEHGGEGCCGGGGKGGCGCH" regulatory complement(3606918..3606923) /regulatory_class="ribosome_binding_site" /gene="slyD" /locus_tag="STM3455" /note="putative RBS for slyD; RegulonDB:STMS1H003457" gene complement(3607007..3607212) /gene="yheV" /locus_tag="STM3456" /db_xref="GeneID:1254979" CDS complement(3607007..3607207) /gene="yheV" /locus_tag="STM3456" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462360.1" /db_xref="GI:16766745" /db_xref="GeneID:1254979" /translation="MAIRKRFIAGAKCPACQAQDTMAMWRENNVDIVECVKCGHQMRE ADKDVREHVRKEEQVIGIFHPD" regulatory complement(3607207..3607212) /regulatory_class="ribosome_binding_site" /gene="yheV" /locus_tag="STM3456" /note="putative RBS for yheV; RegulonDB:STMS1H003458" gene complement(3607218..3609033) /gene="kefB" /locus_tag="STM3457" /db_xref="GeneID:1254980" CDS complement(3607218..3609023) /gene="kefB" /locus_tag="STM3457" /note="similar to E. coli K+ efflux; NEM-activable K+/H+ antiporter (AAC76375.1); Blastp hit to AAC76375.1 (601 aa), 93% identity in aa 1 - 601" /codon_start=1 /transl_table=11 /product="glutathione-regulated potassium-efflux system protein KefB" /protein_id="NP_462361.1" /db_xref="GI:16766746" /db_xref="GeneID:1254980" /translation="MEGADLLTAGVLFLFAAVAAVPLAARLGIGAVLGYLLAGIAIGP WGLGFISDVDEILHFSELGVVFLMFIIGLELNPSRLWQLRRSIFGVGAAQVLLSAAVL AGLLMLADFLWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAV IPALALVPLLAGSADEHFDWFKVAMKVLAFAVMLIGGRYLLRPVFRFIAASGVREVFT AATLLLVLSAALFMDALGLSMALGTFIAGVLLAESEYRHELENAIDPFKGLLLGLFFI SVGMSLNLGVLYTHLLWVAASVVILVVIKMLTLYLLARLYGIRSSERMQFASVLSQGG EFAFVLFSTASSQRLFQGDQMALLLVTVTLSMMTTPLLMKGIDKWLSRRLNGPEENDE KPWVEDDKPQVIVVGFGRFGQVIARLLMANKMRITVLERDIGAVNLMRKYGYKVYYGD ATQVELLRSAGAEAAESIVITCNEPEDTMKLVALCQQHFPHLHILARARGRVEAHELL QAGVTQFSRETFSSALELGRKTLVSLGMHPHQAQRAQLHFRRLDMRMLRELIPEHSDM VQISRAREARRELEEIFQREMQQERRQLDGWDEFE" gene complement(3609023..3609585) /gene="yheR" /locus_tag="STM3458" /db_xref="GeneID:1254981" CDS complement(3609023..3609574) /gene="yheR" /locus_tag="STM3458" /note="similar to E. coli putative NAD(P)H oxidoreductase (AAC76376.1); Blastp hit to AAC76376.1 (184 aa), 89% identity in aa 2 - 183" /codon_start=1 /transl_table=11 /product="glutathione-regulated potassium-efflux system ancillary protein KefG" /protein_id="NP_462362.1" /db_xref="GI:16766747" /db_xref="GeneID:1254981" /translation="MSQPAKVLLLYAHPESQDSVANRVLLKPAIQHNNVTVHDLYARY PDFFIDTPYEQALLREHDVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNQLVG KYWRSVITTGEPESAYRYDALNRYPMSDVLRPFELTAAMCRMHWMPPIIVYWARRQSP QTLASHAKAYGEWLANPVSAGGY" regulatory complement(3609028..3609033) /regulatory_class="ribosome_binding_site" /gene="yheR" /locus_tag="STM3458" /note="putative RBS for kefB; RegulonDB:STMS1H003459" regulatory complement(3609580..3609585) /regulatory_class="ribosome_binding_site" /gene="yheR" /locus_tag="STM3458" /note="putative RBS for yheR; RegulonDB:STMS1H003460" gene 3609830..3611747 /gene="yheS" /locus_tag="STM3459" /db_xref="GeneID:1254982" regulatory 3609830..3609835 /regulatory_class="ribosome_binding_site" /gene="yheS" /locus_tag="STM3459" /note="putative RBS for yheS; RegulonDB:STMS1H003461" CDS 3609840..3611747 /gene="yheS" /locus_tag="STM3459" /note="contains duplicated ATPase domain; similar to E. coli putative ATP-binding component of a transport system (AAC76377.1); Blastp hit to AAC76377.1 (637 aa), 93% identity in aa 1 - 631" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_462363.1" /db_xref="GI:16766748" /db_xref="GeneID:1254982" /translation="MIVFSSLQIRRGVRVLLDNASATINPGQKVGLVGKNGCGKSTLL ALLKNEISADAGSFTLPGTWQLAWVNQETPALPQPAIEYVIDGDREYRQLEAQLNDAN ERNDGHAIASIHGKLDAIDAWTVRSRAASLLHGLGFSNDQLERPVSDFSGGWRMRLNL AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYPGTLILISHDRDFLDPIVDKIIH IEQQTLFEYTGNYSAFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQA QSRIKMLERMELIAPAHVDNPFHFSFRAPESLPNPLLKMEKVSAGYGDRIILESIKLN LVPGSRIGLLGRNGAGKSTLIKLLAGELEPLHGEIGLAKGIKLGYFAQHQLEFLRADE SPLQHMARLAPQELEQKLRDYLGGFGFQGDKVTEETQRFSGGEKARLVLALIVWQRPN LLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLIRSTTDDLYLVHDKKVEPF DGDLEDYQQWLSDVQKQENQADNAPKENNANSAQSRKDQKRREAELRTLTQPLRKEIT RLEKEMEKLNAQLAQAEEKLGDSSLYDPSRKAEMTECLQLQASAKSGLEACEMAWLEA QEQLEQMMQND" gene complement(3611815..3612050) /locus_tag="STM3460" /note="pseudogene; in-frame stop following codon 15" /pseudo /db_xref="GeneID:1254983" gene complement(3612133..3612455) /locus_tag="STM3461" /db_xref="GeneID:1254984" CDS complement(3612133..3612444) /locus_tag="STM3461" /note="similar to E. coli orf, hypothetical protein (AAC74737.1); Blastp hit to AAC74737.1 (101 aa), 65% identity in aa 3 - 100" /codon_start=1 /transl_table=11 /product="monooxygenase" /protein_id="NP_462364.1" /db_xref="GI:16766749" /db_xref="GeneID:1254984" /translation="MSKTLLQIHFNFSGPFGEEMTQQLVGLAESINEEPGFIWKIWTE SEKNQQAGGIYLFESEETAQAYIKKHTARLKNLGVDEVTFTLFGVNDALTKINHGNLC R" regulatory complement(3612450..3612455) /regulatory_class="ribosome_binding_site" /locus_tag="STM3461" /note="putative RBS for STM3461; RegulonDB:STMS1H003463" gene 3612642..3613709 /gene="yheT" /locus_tag="STM3462" /db_xref="GeneID:1254985" CDS 3612642..3613709 /gene="yheT" /locus_tag="STM3462" /note="contains alpha/beta-hydrolase fold; similar to E. coli orf, hypothetical protein (AAC76378.1); Blastp hit to AAC76378.1 (340 aa), 84% identity in aa 1 - 339" /codon_start=1 /transl_table=11 /product="putative hydrolase" /protein_id="NP_462365.1" /db_xref="GI:16766750" /db_xref="GeneID:1254985" /translation="MRGIVLFPIINCSGAMVEITSTEMTPPVNDSHEFIPMRGIRNRH LQTMLPRLIRRKVKFNAHWQRLELPDGDFVDLAWSEDPQQAKYKPRLVVFHGLEGSLN SPYAHGLIEAAQKRGWLGVVMHFRGCSGEPNRLNRIYHSGETEDGAWFLRWLQREFGA VPTAAVGYSLGGNMLACLLAKEGRDIPIEAAVIVSAPFVLEACSYHMDKGFSRVYQRY LLNLLKANASRKLAAYPGSLPVNLAQLKSMRRIREFDDLITAKIHGFADAIDYYRQCS AMPLLNQIAKPTLIIHAKDDPFMDHHVIPKAEDLPPQVEYQLTEHGGHVGFIGGTPLR PEMWLERRIPDWLTTYLEASS" gene 3613706..3613924 /gene="yheU" /locus_tag="STM3463" /db_xref="GeneID:1254986" CDS 3613706..3613924 /gene="yheU" /locus_tag="STM3463" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462366.3" /db_xref="GI:1127432620" /db_xref="GeneID:1254986" /translation="MIIPWQGLAPDTLDNLIESFVLREGTDYGEHERSLEQKVADVKR QLQSGEAVLVWSELHETVNIMPKKQFRE" gene 3613965..3614845 /gene="prkB" /locus_tag="STM3464" /db_xref="GeneID:1254987" regulatory 3613965..3613970 /regulatory_class="ribosome_binding_site" /gene="prkB" /locus_tag="STM3464" /note="putative RBS for prkB; RegulonDB:STMS1H003464" CDS 3613976..3614845 /gene="prkB" /locus_tag="STM3464" /EC_number="2.7.1.19" /note="similar to E. coli probable phosphoribulokinase (AAC76380.1); Blastp hit to AAC76380.1 (289 aa), 97% identity in aa 1 - 289" /codon_start=1 /transl_table=11 /product="putative phosphoribulokinase" /protein_id="NP_462367.1" /db_xref="GI:16766752" /db_xref="GeneID:1254987" /translation="MSAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNLHAAEVEGDSF HRYTRPEMDMAIRKARDAGRHISYFGPEANDFSLLEHTFIEYGQTGKGQSRKYLHTYD EAVPWNQVPGTFTPWQPLPEPTDVLFYEGLHGGVVTPQHDVARHVDLLVGVVPIVNLE WIQKLIRDTSERGHSREAVMDSVVRSMDDYINYITPQFSRTHINFQRVPTVDTSNPFA AKGIPSLDESFVVIHFRNLEGIDFPWLLAMLQGSFISHINTLVVPGGKMGLAMELIML PLVQRLMEGKKIE" gene complement(3614941..3615513) /gene="yhfA" /locus_tag="STM3465" /db_xref="GeneID:1254988" CDS complement(3614941..3615345) /gene="yhfA" /locus_tag="STM3465" /note="similar to E. coli orf, hypothetical protein (AAC76381.1); Blastp hit to AAC76381.1 (134 aa), 94% identity in aa 1 - 134" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462368.1" /db_xref="GI:16766753" /db_xref="GeneID:1254988" /translation="MQARVKWVEGLTFLGESSSGHQILMDGNSGDKAPSPMEMVLMAA GGCSAIDVVSILQKGRQNVTNCEVKLTSERREDAPRLFTHINLHFIVTGSDLKEAAVA RAVDLSAEKYCSVALMLEKAVNITHSYEVIAA" regulatory complement(3615355..3615360) /regulatory_class="ribosome_binding_site" /gene="yhfA" /locus_tag="STM3465" /note="putative RBS for yhfA; RegulonDB:STMS1H003465" protein_bind complement(3615424..3615444) /gene="yhfA" /locus_tag="STM3465" /note="putative binding site for CRP, RegulonDB: STMS1H000123" /bound_moiety="CRP" protein_bind 3615430..3615443 /note="putative binding site for CRP, RegulonDB: STMS1H000077" /bound_moiety="CRP" gene 3615460..3616285 /gene="crp" /locus_tag="STM3466" /db_xref="GeneID:1254989" regulatory 3615460..3615468 /regulatory_class="minus_35_signal" /gene="crp" /locus_tag="STM3466" /note="putative -35_signal for crp; RegulonDB:STMLTH004592" regulatory 3615484..3615492 /regulatory_class="minus_10_signal" /gene="crp" /locus_tag="STM3466" /note="putative -10_signal for crp; RegulonDB:STMLTH004592" regulatory complement(3615489..3615497) /regulatory_class="minus_10_signal" /gene="yhfA" /locus_tag="STM3465" /note="putative -10_signal for yhfA; RegulonDB:STMLTH004591" regulatory complement(3615505..3615513) /regulatory_class="minus_35_signal" /gene="yhfA" /locus_tag="STM3465" /note="putative -35_signal for yhfA; RegulonDB:STMLTH004591" protein_bind complement(3615510..3615530) /note="putative binding site for CRP, RegulonDB: STMS1H000098" /bound_moiety="CRP" protein_bind 3615514..3615534 /gene="crp" /locus_tag="STM3466" /note="putative binding site for CRP, RegulonDB: STMS1H000086" /bound_moiety="CRP" regulatory 3615639..3615644 /regulatory_class="ribosome_binding_site" /gene="crp" /locus_tag="STM3466" /note="putative RBS for crp; RegulonDB:STMS1H003466" CDS 3615653..3616285 /gene="crp" /locus_tag="STM3466" /note="catabolite gene activator (CAMP receptor protein) (CAMP-regulatoryprotein). (SW:CRP_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional regulator Crp" /protein_id="NP_462369.1" /db_xref="GI:16766754" /db_xref="GeneID:1254989" /translation="MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIV KGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKK FRQLIQVNPDILMRLSSQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR" gene 3616334..3618421 /gene="yhfK" /locus_tag="STM3467" /db_xref="GeneID:1254990" CDS 3616334..3618421 /gene="yhfK" /locus_tag="STM3467" /note="similar to E. coli orf, hypothetical protein (AAC76383.1); Blastp hit to AAC76383.1 (696 aa), 86% identity in aa 1 - 695" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462370.1" /db_xref="GI:16766755" /db_xref="GeneID:1254990" /translation="MWRRLIYHPEINYALRQTLVLCLPVAVGLLIGQLHLGLLFSLVP ACCNIAGLDTPHKRFFKRLIIGASLFAGCSLVTQLLLAESIPLPLILTGLTLVLGVTA EISPLHARLLPASLIAAIFTLSLAGYMPVWEPLLIYALGTLWYGVFNWFWFWLWREQP LRESLSLLYRELADYCEAKYSLLTQHIDPEKALPPLLIRQQKAVDLITQCYQQMHMLS AHNNNDYKRLLRAFQEAMDLQEHISVSLHQPEEVQKLVERSHAEEVIRWNAQTVAARL RVLADDILYHRLPTRFSMEKQIGALEKIANQHPENPVGQFCYWHFSRIARVLRTQRPL YARDLMADKQRRLPLLPALKNYMSLKSPALRNAGRISVMMSIASLMGSALHLPKPYWI LMTVLFVTQNGYGATRVRILHRSVGTLVGLVIAGVTLHLHIPESITLAVMLVLTLASY LIIRKNYGWATVGFTVTAVYTIQLLTLNGEQFIVPRLIDTLIGCLIAFGGMVWLWPQW QSGLLRKNAHDALEAAQEAIRLILSNDPQATPLAYQRMRVNQAHNTLFNSLNQAMQEP GFNTHYLSDMKLWVTHSQFIVEHINAMTTLAREHTMLTPDLAQRYLESCEIAIQRCQQ RLEYDRPGGSGDVNILESPDMPSHGLLSTLEQHLQRIIGHLNTMHTISSMAWRQRPHH GIWLSKRLRDTKG" gene complement(3618464..3619751) /gene="argD" /locus_tag="STM3468" /db_xref="GeneID:1254991" CDS complement(3618464..3619681) /gene="argD" /locus_tag="STM3468" /EC_number="2.6.1.11" /note="NAcOATase and DapATase; similar to E. coli acetylornithine delta-aminotransferase (AAC76384.1); Blastp hit to AAC76384.1 (406 aa), 91% identity in aa 1 - 404" /codon_start=1 /transl_table=11 /product="bifunctional succinylornithine transaminase/acetylornithine transaminase" /protein_id="NP_462371.1" /db_xref="GI:16766756" /db_xref="GeneID:1254991" /translation="MATEQTAITRATFDEVILPVYAPADFIPVKGKGSRVWDQQGKEY IDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAERV LFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDG FGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDE HQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAF HVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSD IRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEG MQRFAQAVGKVVA" regulatory complement(3619687..3619692) /regulatory_class="ribosome_binding_site" /gene="argD" /locus_tag="STM3468" /note="putative RBS for argD; RegulonDB:STMS1H003467" regulatory complement(3619725..3619733) /regulatory_class="minus_10_signal" /gene="argD" /locus_tag="STM3468" /note="putative -10_signal for argD; RegulonDB:STMLTH004593" regulatory complement(3619743..3619751) /regulatory_class="minus_35_signal" /gene="argD" /locus_tag="STM3468" /note="putative -35_signal for argD; RegulonDB:STMLTH004593" gene complement(3619767..3620341) /gene="pabA" /locus_tag="STM3469" /db_xref="GeneID:1254992" CDS complement(3619767..3620330) /gene="pabA" /locus_tag="STM3469" /EC_number="4.1.3.-" /note="para-aminobenzoate synthase glutamine amidotransferase component II. (SW:PABA_SALTY)" /codon_start=1 /transl_table=11 /product="aminodeoxychorismate synthase component II" /protein_id="NP_462372.1" /db_xref="GI:16766757" /db_xref="GeneID:1254992" /translation="MILLIDNYDSFTWNLYQYFCELGAEVQVRRNDALTLAHIDALNP QKIVISPGPCTPNDAGISLAVIRHYAGRIPMLGVCLGHQAMAQAFGASVVRAAKVMHG KTSPVTHNGQGVFRGLPSPLTVTRYHSLIVDPATLPECFEITAWSETQEIMGIRHREW DLEGVQFHPESILSEQGHALLKNFLRR" regulatory complement(3620336..3620341) /regulatory_class="ribosome_binding_site" /gene="pabA" /locus_tag="STM3469" /note="putative RBS for pabA; RegulonDB:STMS1H003468" gene complement(3620362..3620972) /gene="fic" /locus_tag="STM3470" /db_xref="GeneID:1254993" CDS complement(3620362..3620964) /gene="fic" /locus_tag="STM3470" /note="stationary phase induced gene; affects cell division; cell filamentation protein FIC. (SW:FIC_SALTY)" /codon_start=1 /transl_table=11 /product="cell filamentation protein Fic" /protein_id="NP_462373.1" /db_xref="GI:16766758" /db_xref="GeneID:1254993" /translation="MSDKFGEGRDPYLYPGLNVMRNRLGIHQAQRLAQAAYEMTALRA ATIELGPLVRGLPHLCAIHRQLYQDIFDWAGQLREVDIYQGDTRFCHFAYIEKEGNAL MQDLEEEGYLVGLAHEKFVERLAHYYCEINVLHPFRFGSGLAQRIFFEQLALHAGYAL SWQGIAVETWKQANQSGAMGDLSALRAIFQKAISEARETE" gene complement(3620954..3621133) /gene="yhfG" /locus_tag="STM3471" /db_xref="GeneID:1254994" CDS complement(3620954..3621121) /gene="yhfG" /locus_tag="STM3471" /note="hypothetical 6.8 Kda protein in fic-ppiA intergenic region. (SW:YHFG_SALTY)" /codon_start=1 /transl_table=11 /product="DUF2559 domain-containing protein" /protein_id="NP_462374.1" /db_xref="GI:16766759" /db_xref="GeneID:1254994" /translation="MKKLTDKQKSRFWEQRRNVNFQQSRRLEGIEIPLVTLTADEALV RLDELRRHYER" regulatory complement(3620967..3620972) /regulatory_class="ribosome_binding_site" /gene="yhfG" /locus_tag="STM3471" /note="putative RBS for fic; RegulonDB:STMS1H003469" regulatory complement(3621128..3621133) /regulatory_class="ribosome_binding_site" /gene="yhfG" /locus_tag="STM3471" /note="putative RBS for yhfG; RegulonDB:STMS1H003470" gene complement(3621230..3621875) /gene="ppiA" /locus_tag="STM3472" /db_xref="GeneID:1254995" CDS complement(3621230..3621802) /gene="ppiA" /locus_tag="STM3472" /EC_number="5.2.1.8" /note="peptidyl-prolyl cis-trans isomerase A. (SW:PPIA_SALTY)" /codon_start=1 /transl_table=11 /product="peptidylprolyl isomerase A" /protein_id="NP_462375.1" /db_xref="GI:16766760" /db_xref="GeneID:1254995" /translation="MLKSTLAAVAAVFALSALSPAALAAKGDPHVLLTTSAGNIELEL NSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFNEQMQQKKPNPPIKNEAD NGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVAD KISQVPTHDVGPYQNVPTKPVVILSAKVLP" regulatory complement(3621808..3621813) /regulatory_class="ribosome_binding_site" /gene="ppiA" /locus_tag="STM3472" /note="putative RBS for ppiA; RegulonDB:STMS1H003471" regulatory complement(3621851..3621859) /regulatory_class="minus_10_signal" /gene="ppiA" /locus_tag="STM3472" /note="putative -10_signal for ppiA; RegulonDB:STMLTH004594" regulatory complement(3621867..3621875) /regulatory_class="minus_35_signal" /gene="ppiA" /locus_tag="STM3472" /note="putative -35_signal for ppiA; RegulonDB:STMLTH004594" protein_bind complement(3621936..3621956) /note="putative binding site for CRP, RegulonDB: STMS1H000052" /bound_moiety="CRP" protein_bind complement(3621990..3622010) /note="putative binding site for CRP, RegulonDB: STMS1H000115" /bound_moiety="CRP" gene 3622069..3623260 /gene="yhfC" /locus_tag="STM3473" /db_xref="GeneID:1254996" regulatory 3622069..3622074 /regulatory_class="ribosome_binding_site" /gene="yhfC" /locus_tag="STM3473" /note="putative RBS for yhfC; RegulonDB:STMS1H003472" CDS 3622079..3623260 /gene="yhfC" /locus_tag="STM3473" /note="similar to E. coli putative transport (AAC76389.1); Blastp hit to AAC76389.1 (393 aa), 90% identity in aa 1 - 393" /codon_start=1 /transl_table=11 /product="MFS transporter TsgA" /protein_id="NP_462376.1" /db_xref="GI:16766761" /db_xref="GeneID:1254996" /translation="MTNSNRIKLTWISFLSYALTGALVIVTGMVMGNIADYFHLPVSS MSNTFTFLNAGILISIFLNAWLMEIIPLKTQLRFGFILMVLAVAGLMFGHSLALFSAA MFVLGLVSGITMSIGTFLITQLYEGRQRGSRLLFTDSFFSMAGMIFPMVAAFLLARSI EWYWVYACIGLVYLAIFILTFGCEFPALGKHAQHSQAPVVKEKWGIGVLFLAVAALCY ILGQLGFISWVPEYAKGLGMSLNDAGALVSDFWMSYMFGMWAFSFILRFFDLQRILTV LAGMAAVLMYLFITGTQAHMPWFILTLGFFSSAIYTSIITLGSQQTKVASPKLVNFIL TCGTIGTMLTFVVTGPIVAHSGPQAALLTANGLYAVVFVMCFALGFVSRHRQHSAPAT H" gene 3623325..3626066 /gene="nirB" /locus_tag="STM3474" /db_xref="GeneID:1254997" regulatory 3623325..3623333 /regulatory_class="minus_35_signal" /gene="nirB" /locus_tag="STM3474" /note="putative -35_signal for nirB; RegulonDB:STMLTH004595" regulatory 3623349..3623357 /regulatory_class="minus_10_signal" /gene="nirB" /locus_tag="STM3474" /note="putative -10_signal for nirB; RegulonDB:STMLTH004595" protein_bind 3623398..3623420 /gene="nirB" /locus_tag="STM3474" /note="putative binding site for FNR, RegulonDB: STMS1H000151" /bound_moiety="FNR" protein_bind 3623422..3623442 /gene="nirB" /locus_tag="STM3474" /note="putative binding site for NarL, RegulonDB: STMS1H000309" /bound_moiety="NarL" protein_bind 3623450..3623472 /gene="nirB" /locus_tag="STM3474" /note="putative binding site for FNR, RegulonDB: STMS1H000165" /bound_moiety="FNR" regulatory 3623514..3623519 /regulatory_class="ribosome_binding_site" /gene="nirB" /locus_tag="STM3474" /note="putative RBS for nirB; RegulonDB:STMS1H003473" CDS 3623523..3626066 /gene="nirB" /locus_tag="STM3474" /EC_number="1.6.6.-" /note="similar to E. coli nitrite reductase (NAD(P)H) subunit (AAC76390.1); Blastp hit to AAC76390.1 (847 aa), 95% identity in aa 1 - 847" /codon_start=1 /transl_table=11 /product="nitrite reductase large subunit" /protein_id="NP_462377.1" /db_xref="GI:16766762" /db_xref="GeneID:1254997" /translation="MSKVRLAIIGNGMVGHRFIEDLLDKSDASLFDITVFCEEPRKAY DRVHLSSYFSHHTAEELSLVREGFYEKHGVKVLVGERAITINRQEKVIHSSAGRTVYY DKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEA AGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTQEIVQQGN EARKTMRFADGSELEVDFIVFSTGIRPRDKLATQCGLAVAQRGGIVINDTCQTSDPDI YAIGECASWNNRVYGLVAPGYKMAQVAVDHILGSENAFEGADLSAKLKLLGVDVGGIG DAHGRTPGARSYVYLDESKEVYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIE LPENPDSLILPSHAGSGKPAIGVDKLPDSAQICSCFDVTKGDLIAAINKGCHTVAALK AETKAGTGCGGCIPLVTQVLNAELAKQGIEVNNNLCEHFAYSRQELFHLIRVEGIKTF EELLAKHGKGYGCEVCKPTVGSLLASCWNEYILKPQHTPLQDTNDNFLANIQKDGTYS VIPRSAGGEITPEGLVAVGRIAREFNLYTKITGSQRIGLFGAQKDDLPEIWRQLIEAG FETGHAYAKALRMAKTCVGSTWCRYGVGDSVGFGVELENRYKGIRTPHKMKFGVSGCT RECAEAQGKDVGIIATEKGWNLYVCGNGGMKPRHADLLAADLDRDTLIKYLDRFMMFY IRTADKLTRTAPWLDNLEGGIEYLKSVIIDDKLGLNEHLEEEMARLRAAVVCEWTETV NTPSAQVRFKHFINSDKRDPNVQVVPEREQHRPATPYERIPVTLVEENA" gene 3626052..3626389 /gene="nirD" /locus_tag="STM3475" /db_xref="GeneID:1254998" regulatory 3626052..3626057 /regulatory_class="ribosome_binding_site" /gene="nirD" /locus_tag="STM3475" /note="putative RBS for nirD; RegulonDB:STMS1H003474" CDS 3626063..3626389 /gene="nirD" /locus_tag="STM3475" /EC_number="1.6.6.-" /note="nitrite reductase [NAD(P)H] small subunit. (SW:NIRD_SALTY)" /codon_start=1 /transl_table=11 /product="nitrite reductase small subunit" /protein_id="NP_462378.1" /db_xref="GI:16766763" /db_xref="GeneID:1254998" /translation="MSQWQNICKIDDILPGTGVCALSGGEQVAIFRPYHSDQVFAISN IDPFFEASVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYDARVKDG VVQLRG" gene 3626649..3627464 /gene="nirC" /locus_tag="STM3476" /db_xref="GeneID:1254999" regulatory 3626649..3626654 /regulatory_class="ribosome_binding_site" /gene="nirC" /locus_tag="STM3476" /note="putative RBS for nirC; RegulonDB:STMS1H003475" CDS 3626655..3627464 /gene="nirC" /locus_tag="STM3476" /note="potential nitrite transporter. (SW:NIRC_SALTY)" /codon_start=1 /transl_table=11 /product="nitrite transporter NirC" /protein_id="NP_462379.1" /db_xref="GI:16766764" /db_xref="GeneID:1254999" /translation="MFTDTINKCAANAARIARLSANNPLGFWVSSAMAGAYVGLGIIL IFTLGNLLDPSVRPLVMGATFGIALTLVIIAGSELFTGHTMFLTLGVKAGTISHGQMW AILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTSIVHSVALAKTTAPATVLFFKGALC NWLVCLAIWMAIRTEGTAKFLAIWWCLLAFIASGYEHSVANMTLFALSWFGHHSDAYT LAGIGHNLLWVTLGNTLSGVVFMGLGYWYATPKSERPAPAKINQPEAAANN" gene 3627463..3628849 /gene="cysG" /locus_tag="STM3477" /db_xref="GeneID:1255000" regulatory 3627463..3627468 /regulatory_class="ribosome_binding_site" /gene="cysG" /locus_tag="STM3477" /note="putative RBS for cysG; RegulonDB:STMS1H003476" CDS 3627476..3628849 /gene="cysG" /locus_tag="STM3477" /EC_number="1.-.-.-" /EC_number="2.1.1.107" /EC_number="4.99.1.-" /note="catalyses four separate reactions that are required for the transformation of uroporphyrinogen III into siroheme; SIROHEME synthase [includes: uroporphyrin-III C-methyltransferase]. (SW:CYSG_SALTY)" /codon_start=1 /transl_table=11 /product="uroporphyrinogen-III C-methyltransferase" /protein_id="NP_462380.1" /db_xref="GI:16766765" /db_xref="GeneID:1255000" /translation="MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT FIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV VDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLESLLPQHLGQVARYAGQ LRARVKKQFATMGERRRFWEKFFVNDRLAQSLANADEKAVNATTERLFSEPLDHRGEV VLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHC VPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAAS GCSAYSGIPLTHRDYAQSVRLVTGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQE KLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGELAQQVESPALIIVGRVVALRDK LNWFSNH" gene 3629155..3635036 /gene="bigA" /locus_tag="STM3478" /db_xref="GeneID:1255001" regulatory 3629155..3629160 /regulatory_class="ribosome_binding_site" /gene="bigA" /locus_tag="STM3478" /note="putative RBS for bigA; RegulonDB:STMS1H003477" CDS 3629175..3635036 /gene="bigA" /locus_tag="STM3478" /note="putative surface-exposed virulence protein BigA (gi|5081595)" /codon_start=1 /transl_table=11 /product="putative surface-exposed virulence protein" /protein_id="NP_462381.1" /db_xref="GI:16766766" /db_xref="GeneID:1255001" /translation="MNPMQKKKLISIAIALTLQSYYIPAIAAENNDDEKECPSNISSL PKEKRAKLSPTCLATPENDNHWGWVAGGVAALVAGVAIGVENNGGGDSNHSYTPPKPD NGGDVTPPDDGGNVTPPDDGGNVTPPDDGGDDNVTPPDDSGDDDVAPPDDSGDDDVTP PDDSGDDDVTPPDDSGDGDVTPPDDSGDDDVTPPDDSGDDDVTPPDDSGDDDVTPPDD SGDDDVTPPDDSGDDDVTPPDDSGDDDDTPPDDSVITFSNGVTIDKGKDTLTFDSFKL DNGSVLEGAVWNYSEQDNQWQLTTADGKTLNVTGWDVTDANAAVIEGTQENGLYWKYD SRGYLIIADDNTTVISGDDQAHNSDRGMDISGQDRTGVIISGDRTVNTLTGDSSVTDG ATGMVISGDGTTNTISGHSTVDNATGALISGNGTTTNFAGDIAVSGGGTAIIIDGDNA TIKNTGTSDISGAGSTGTVIDGNNARVNNDGDMTITDGGTGGHITGDNVVIDNAGSTT VSGADATALYIEGDNALVINEGNQTISGGAVGTRIDGDDAHTTNTGDIAVDGAGSAAV IINGDNGSLTQAGDLLVTDGAMGIITYGTGNEAKNTGNATVRDADSVGFVVAGEKNTF KNKGDIDVSLNGTGALVSGDMSQVTLDGDINVVSVQDSEGVFSSATGVSVSGDSNAVD ITGNVNISADYGQDDLAAGAPPLTGVVVGGNGNTVTLNGALNIDDNDLSATGGQYLDV VGLSVTGDDNDVEIDGGINITHSEDPLDGTSADITGISVSGNSTVTLNGHSTIDTNTV VGGHVVLARVNNGGSLILGDDSVVDVNVSYIPTGYYTYNALLMADGEGTSIENKGDIT SHGVYSVIRADNGSEVSNSGDILVYATSSNSSEDRAAITRASGEGSAVHNKAGGDITL ISDQTPQGSGGIEVYPLKWYTHTFYAMMASDYGDVVNDEGATIHLQGAGVYGVTASRG KALNEGNIYLDGLVPTLDDENNITSTSYWQPSSLYLTSSGMVAGSTDADGDATAINTG NITVNNAGFGMMALNGGTAINQGVITLTADDGVTGQADELVGMAALNGGVVINDTSGV INIDADYGQAFLSDSSSYIINNGSINLNGSPMDDTDSHMGGTPTDKIWIQSLPGSGDS DTRTSDTGFFTAGTLANYGTETLNGDVDVNGGWLYNEAGASLTVNGTVTINGGANALA NYGTLDADAISTWHSLFNEADGSITTDLLTLNGDVTFYNNGDFTGSIAGTSYQQEIVN TGDMTVAEDGKSLVSGSFYFYNEEDATLTNSGSAVEGGENTIINLTRANDSLTQVNSG TITATNGYSAITTVNGSNDPKWIWNTATGVINGINPDAPLINLGRGYNFGNQGTINVQ GDNAVAISGGTSSYVINLVNSGTINVGTEQGKEDGTNGTGLIGIKGNGNATTINNTAD GVINVYADDSYAFGGKTKAIINNGEINLLCDSGCDIYAPGTTGTQNDHNGTADIVIPD ATTAPTEGSIPTPPADPNAPQQLSNYIVGTNADGSSGTLKANNLVIGDNVKVDTGFTS GTADTTVVVDNAFTGSNIQGADNITSTSVVWNAQGSQDADGNVDVTMTKNAYADVATD SSVSDVAQALDAGYTNNELYTSLNVGTTAELNSALKQVSGAQATTVFREARVLSNRFT MLADAAPQIKDGLAFNVVAKGDPRAELGNDTQYDMLALRQTLDLTASQNLTLEYGIAR LDGDGSKTAGDNGLTGGYSQFFGLKHSMAFDEGLAWNNSLRYDVHNLDSSRSVAYGDV NKIADSDMRQQYLEFRSEGAKTFTMMGDALKVTPYAGVKFRHTMEDGYKERSAGDFNL SMNSGNETAVDSIVGLKLDYAGKDGWSATATLEGGPNLSYSKSQRTASLQGAAGQSFG VDDGQKGGGVNGLATIGVKYSSNDTALHLDAYQWKEDGISDKGFMLNVKKTFR" mobile_element complement(3635061..3635769) /mobile_element_type="insertion sequence:IS200_5" gene complement(3635168..3635632) /gene="tnpA_5" /locus_tag="STM3479" /db_xref="GeneID:1255002" CDS complement(3635168..3635626) /gene="tnpA_5" /locus_tag="STM3479" /note="transposase for insertion sequence element IS200 (SW:T200_SALTY)" /codon_start=1 /transl_table=11 /product="IS200 family transposase" /protein_id="NP_462382.1" /db_xref="GI:16766767" /db_xref="GeneID:1255002" /translation="MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKL CEWKNVRILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRN REFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTGRK" regulatory complement(3635627..3635632) /regulatory_class="ribosome_binding_site" /gene="tnpA_5" /locus_tag="STM3479" /note="putative RBS for tnpA_5; RegulonDB:STMS1H003478" gene 3635928..3636110 /gene="yhfL" /locus_tag="STM3480" /db_xref="GeneID:1255003" regulatory 3635928..3635933 /regulatory_class="ribosome_binding_site" /gene="yhfL" /locus_tag="STM3480" /note="putative RBS for yhfL; RegulonDB:STMS1H003479" CDS 3635940..3636110 /gene="yhfL" /locus_tag="STM3480" /note="similar to E. coli orf, hypothetical protein (AAC76394.1); Blastp hit to AAC76394.1 (55 aa), 81% identity in aa 1 - 54" /codon_start=1 /transl_table=11 /product="DUF4223 domain-containing protein" /protein_id="NP_462383.1" /db_xref="GI:16766768" /db_xref="GeneID:1255003" /translation="MFKFVKIAVVAGVLATLTACTGHIENKKNNCSYDYLLHPAISIS KIIGGCGPAADQ" gene complement(3636255..3637272) /gene="trpS" /locus_tag="STM3481" /db_xref="GeneID:1255004" CDS complement(3636255..3637259) /gene="trpS" /locus_tag="STM3481" /EC_number="6.1.1.2" /note="similar to E. coli tryptophan tRNA synthetase (AAC76409.1); Blastp hit to AAC76409.1 (334 aa), 96% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="tryptophan--tRNA ligase" /protein_id="NP_462384.1" /db_xref="GI:16766769" /db_xref="GeneID:1255004" /translation="MTKPIVFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQ HAITVRQDAQQLRKATLDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFG ELSRMTQFKDKSARYAENINAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDI AQRFNGLYGDIFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVK KIKRAVTDSDEPPVVRYDVKEKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGE VAEAVSGMLSELQERYHRFRNDEAFLQKVMKDGAEKASARAAETLKAVYEAIGFVAKP " gene complement(3637252..3638020) /gene="gph" /locus_tag="STM3482" /db_xref="GeneID:1255005" CDS complement(3637252..3638010) /gene="gph" /locus_tag="STM3482" /EC_number="3.1.3.18" /note="similar to E. coli phosphoglycolate phosphatase (AAC76410.1); Blastp hit to AAC76410.1 (252 aa), 90% identity in aa 1 - 252" /codon_start=1 /transl_table=11 /product="phosphoglycolate phosphatase" /protein_id="NP_462385.1" /db_xref="GI:16766770" /db_xref="GeneID:1255005" /translation="MDKLQNIRGVAFDLDGTLVDSAPGLAAAVDMALYALELPVAGEE RVITWIGNGADVLMERALTWAREERATLRKTMGKPPVDEDIPAEEQVRILRKLFDRYY GEVAEEGTVLFPHVADTLGALHASGLSLGLVTNKPTPFVAPLLESLDIAKYFSVVIGG DDVQNKKPHPEPLLLVASRLGMMPEQMLFVGDSRNDIQAAKAAGCPSVGLTYGYNYGE AIALSEPDVIYDSFNDLLPALGLPHSDNQEIKND" regulatory complement(3637267..3637272) /regulatory_class="ribosome_binding_site" /gene="gph" /locus_tag="STM3482" /note="putative RBS for trpS; RegulonDB:STMS1H003480" gene complement(3638003..3638692) /gene="rpe" /locus_tag="STM3483" /db_xref="GeneID:1255006" CDS complement(3638003..3638680) /gene="rpe" /locus_tag="STM3483" /EC_number="5.1.3.1" /note="similar to E. coli D-ribulose-5-phosphate 3-epimerase (AAC76411.1); Blastp hit to AAC76411.1 (225 aa), 97% identity in aa 1 - 224" /codon_start=1 /transl_table=11 /product="ribulose-phosphate 3-epimerase" /protein_id="NP_462386.1" /db_xref="GI:16766771" /db_xref="GeneID:1255006" /translation="MKQYLIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVP NLTIGPMVLKSLRQYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASEHVDRT LQLIKEHGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLRE VRRRIDASGYDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDKPDYKKVIDEMRSE LAKVTHG" regulatory complement(3638015..3638020) /regulatory_class="ribosome_binding_site" /gene="rpe" /locus_tag="STM3483" /note="putative RBS for gph; RegulonDB:STMS1H003481" regulatory complement(3638687..3638692) /regulatory_class="ribosome_binding_site" /gene="rpe" /locus_tag="STM3483" /note="putative RBS for rpe; RegulonDB:STMS1H003482" gene complement(3638698..3639534) /gene="dam" /locus_tag="STM3484" /db_xref="GeneID:1255007" CDS complement(3638698..3639534) /gene="dam" /locus_tag="STM3484" /EC_number="2.1.1.72" /note="DNA adenine methylase. (SW:DMA_SALTY)" /codon_start=1 /transl_table=11 /product="DNA adenine methylase" /protein_id="NP_462387.1" /db_xref="GI:16766772" /db_xref="GeneID:1255007" /translation="MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLN TDFSRYILADINSDLISLYNIVKLRTDEYVQASRELFMPETNQAEVYYQLREEFNTCQ DPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKRPYFPEAELYHFAEKAQNAFF YCESYADSMARADKSSVVYCDPPYAPLSATANFTAYHTNSFSLTQQAHLAEIAENLVS NRIPVLISNHDTALTREWYQLAKLHVVKVRRSISSNGGTRKKVDELLALYQPGVATPA RK" gene complement(3639715..3641004) /gene="damX" /locus_tag="STM3485" /db_xref="GeneID:1255008" CDS complement(3639715..3640992) /gene="damX" /locus_tag="STM3485" /note="similar to E. coli putative membrane protein; interferes with cell division (AAC76413.1); Blastp hit to AAC76413.1 (428 aa), 78% identity in aa 1 - 428" /codon_start=1 /transl_table=11 /product="cell division protein DamX" /protein_id="NP_462388.1" /db_xref="GI:16766773" /db_xref="GeneID:1255008" /translation="MDEFKPEDELKPDPSDRRTGRSRQSSERDSEPQINFDDVDLDAD DRRPTRTRKARSEEPEVEEEYESDEDDTVDEERVERRPRKRKKAAHKPASRQYMMMGV GVLVLLLLIIGIGSALKAPSTSSSEPSASGEKSIDLSGNAADQANATQPAPGATSAEQ TAGNTSQDISLPPISSTPTQGQSPVVADGQQRVEVQGDLNNALTQNPEQMNNVAVNST LPTEPATVAPVRNGSTTRQAAVSEPAERHTTRPERKQAVIEPKKPQTTAKTTTAEPKK PVAPVKRTEPAAPAATPKATTTTAAPTATASAAPVQTAKPAQASTTPVAGGGKSAGNV GALKSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVTGMYAS KEDAKRAVSTLPADVQAKNPWAKPLHQVQADLK" regulatory complement(3640999..3641004) /regulatory_class="ribosome_binding_site" /gene="damX" /locus_tag="STM3485" /note="putative RBS for damX; RegulonDB:STMS1H003483" gene complement(3641090..3642195) /gene="aroB" /locus_tag="STM3486" /db_xref="GeneID:1255009" CDS complement(3641090..3642178) /gene="aroB" /locus_tag="STM3486" /EC_number="4.2.3.4" /note="3-dehydroquinate synthase. (SW:AROB_SALTY)" /codon_start=1 /transl_table=11 /product="3-dehydroquinate synthase" /protein_id="NP_462389.1" /db_xref="GI:16766774" /db_xref="GeneID:1255009" /translation="MERITVTLGERSYPITIAAGLFNEPASFLPLKSGDQVMLVTNET LAPLYLDKVRGVLERAGVNVDSVILPDGEQYKSLTVLDTVFTALLKKPHGRDTTLVAL GGGVIGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQP ASVVVDLDCLKTLPARELTSGLAEVIKYGIILDADFFTWLEGNLDALLRLDGPAMAYC IRRCCELKAEVVAADEREAGLRALLNLGHTFGHAIEAEMGYGNWLHGEAVAAGIVMAA RASERLGQFSSADTQRIIALLERAGLPVNGPCEMSAQDYLPHMLRDKKVLAGELRLVL PLAIGKSEVRGGVSHEVVLSAIADCQQA" regulatory complement(3642190..3642195) /regulatory_class="ribosome_binding_site" /gene="aroB" /locus_tag="STM3486" /note="putative RBS for aroB; RegulonDB:STMS1H003484" gene complement(3642235..3642756) /gene="aroK" /locus_tag="STM3487" /db_xref="GeneID:1255010" CDS complement(3642235..3642756) /gene="aroK" /locus_tag="STM3487" /EC_number="2.7.1.71" /note="similar to E. coli shikimate kinase I (AAC76415.1); Blastp hit to AAC76415.1 (240 aa), 97% identity in aa 68 - 240" /codon_start=1 /transl_table=11 /product="shikimate kinase I" /protein_id="NP_462390.1" /db_xref="GI:16766775" /db_xref="GeneID:1255010" /translation="MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG ADVGWVFDVEGEDGFRNREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVY LETTIEKQLARTQRDKKRPLLQVEAPPREVLEALANERNPLYEEIADVTIRTDDQSAK VVANQIIHMLESN" gene complement(3643221..3644472) /gene="hofQ" /locus_tag="STM3488" /db_xref="GeneID:1255011" CDS complement(3643221..3644459) /gene="hofQ" /locus_tag="STM3488" /note="possibly in biosynthesis of type IV pilin; similar to E. coli putative transport portein (AAC76416.1); Blastp hit to AAC76416.1 (412 aa), 86% identity in aa 1 - 412" /codon_start=1 /transl_table=11 /product="DNA transporter HofQ" /protein_id="NP_462391.1" /db_xref="GI:16766776" /db_xref="GeneID:1255011" /translation="MKRWIAIILIALMPAAQAGKAAKVTLVVDDVPVVQVLQTLAEQE RQNLVVSPDVSGTLSLHLTDVPWKQALQTVVNSAGLVLRQEGNILHVHSQAWQKEHSA RQDAERLRFQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDN RAALAELEKWVSQMDLPVAQVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT LSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIK QGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQA DGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDG KEDERRELVVFITPRLVATE" gene complement(3644374..3644791) /gene="yrfA" /locus_tag="STM3489" /db_xref="GeneID:1255012" CDS complement(3644374..3644775) /gene="yrfA" /locus_tag="STM3489" /note="similar to E. coli orf, hypothetical protein (AAC76417.1); Blastp hit to AAC76417.1 (147 aa), 61% identity in aa 14 - 146" /codon_start=1 /transl_table=11 /product="DNA utilization protein HofP" /protein_id="NP_462392.1" /db_xref="GI:16766777" /db_xref="GeneID:1255012" /translation="MKASRSVLLCFCLLMLTGMRDPFRPPEDRCRIAELSQWRYQGAV RKGERWTGILKDSQQKWRRVEEGQTLENGWTIVRLTAETLTLTTGKNCAPPQWRWLRQ GADNEAMDSHNTDSLDARRAGGKSGESDAGG" regulatory complement(3644467..3644472) /regulatory_class="ribosome_binding_site" /gene="yrfA" /locus_tag="STM3489" /note="putative RBS for hofQ; RegulonDB:STMS1H003485" gene complement(3644765..3645252) /gene="yrfB" /locus_tag="STM3490" /db_xref="GeneID:1255013" CDS complement(3644765..3645238) /gene="yrfB" /locus_tag="STM3490" /note="similar to E. coli orf, hypothetical protein (AAC76418.1); Blastp hit to AAC76418.1 (146 aa), 46% identity in aa 1 - 146" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462393.1" /db_xref="GI:16766778" /db_xref="GeneID:1255013" /translation="MNALFDIWYGMSRRGRVFYWCAGVLCLTLTVALSVGYPGWKTLD TQQTRLSQQREAARQQWRHLRRLSVAAEPLFGRTVENPRPFSPLDFQAPPLRLLHWQP SAQGGEMALKTSWDAVPSLFVRLAESEMSVSRFSLRKEGAELLMTLQLERLANEG" regulatory complement(3644786..3644791) /regulatory_class="ribosome_binding_site" /gene="yrfA" /locus_tag="STM3489" /note="putative RBS for yrfA; RegulonDB:STMS1H003486" gene complement(3645222..3645778) /gene="yrfC" /locus_tag="STM3491" /db_xref="GeneID:1255014" CDS complement(3645222..3645761) /gene="yrfC" /locus_tag="STM3491" /note="similar to E. coli orf, hypothetical protein (AAC76419.1); Blastp hit to AAC76419.1 (179 aa), 49% identity in aa 5 - 179" /codon_start=1 /transl_table=11 /product="pilus assembly protein PilN" /protein_id="NP_462394.1" /db_xref="GI:16766779" /db_xref="GeneID:1255014" /translation="MAHSVNLLPWRRQHYVARLRLWCVVWGASLLLIASLATIARLVF WQEGRINELLLTTENGRTTALAANIPQLQQRQRQQQARLQRQAQRELTQAWQSILTDL ANLLPEQAWLTSLNYQQETLELEGLARTFDALLTLETSLRHYVSFPLNRTGATRQDAQ GRWQFHYQLTRSAARERAL" regulatory complement(3645247..3645252) /regulatory_class="ribosome_binding_site" /gene="yrfB" /locus_tag="STM3490" /note="putative RBS for yrfB; RegulonDB:STMS1H003487" gene complement(3645761..3646556) /gene="yrfD" /locus_tag="STM3492" /db_xref="GeneID:1255015" CDS complement(3645761..3646540) /gene="yrfD" /locus_tag="STM3492" /note="similar to E. coli orf, hypothetical protein (AAC76420.1); Blastp hit to AAC76420.1 (268 aa), 65% identity in aa 10 - 266" /codon_start=1 /transl_table=11 /product="DNA utilization protein HofM" /protein_id="NP_462395.1" /db_xref="GI:16766780" /db_xref="GeneID:1255015" /translation="MAFKTWQIGLHIQQHEALAIAVIHGASGWSLQRWWRLPLMNAST AEGTIPDPQSLAHVLRPWSRELPLRHRIYLSFPANRTLQRAFPHPPMRLREREQVAWL SQTMARELDMDPDLLRFDFQDDALSPAFNVTAVQSKEISELLTLAQTLNVRIAAVTPD ACALQRLLPFIPSGRQCLVWRDESQWLWATRYAWGRKSAREAMTLHDLAATLSVVPEH ISLCAEGEFDPWHAVTVRQPPVPPDGYRFAIALGLAMGEIR" regulatory complement(3645773..3645778) /regulatory_class="ribosome_binding_site" /gene="yrfC" /locus_tag="STM3491" /note="putative RBS for yrfC; RegulonDB:STMS1H003488" regulatory complement(3646551..3646556) /regulatory_class="ribosome_binding_site" /gene="yrfD" /locus_tag="STM3492" /note="putative RBS for yrfD; RegulonDB:STMS1H003489" gene 3646637..3649213 /gene="mrcA" /locus_tag="STM3493" /db_xref="GeneID:1255016" CDS 3646637..3649213 /gene="mrcA" /locus_tag="STM3493" /note="similar to E. coli peptidoglycan synthetase; penicillin-binding protein 1A (AAC76421.1); Blastp hit to AAC76421.1 (858 aa), 92% identity in aa 1 - 858; transpeptidase of penicillin-binding protein 1a" /codon_start=1 /transl_table=11 /product="peptidoglycan synthetase" /protein_id="NP_462396.3" /db_xref="GI:1109557755" /db_xref="GeneID:1255016" /translation="MTLNGKSPVKFVKYLLILAVCCILLGAGSIYGLYRYIEPQLPDV ATLKDVRLQIPMQVYSADGELIAQYGEKRRIPVTLDQIPPEMINAFIATEDSRFYEHH GIDPVGIFRAASVALFSGHASQGASTITQQLARNFFLSPERTLMRKIKEAFLAIRIEQ LLNKNEILELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLSLSEMAVIAGLPKAPSTFN PLYSMDRAIARRNVVLSRMLSEGYITQAQYDQARSEPIDANYHAPEIAFSAPYLSEMV RQEMYNRYGESAYEDGYRIYTTITRKVQQAAQQAVRNNVLDYDMRHGYRGPANVLWKV GETAWDSKKITDTLKALPTYGPLLPAVVTSANPQEATAALADGTSVSLHMEGMRWARP YRSDTQQGPTPRKVTDVVQTGQQIWVRQVDNDWWLAQVPEVNSALVSLNPQTGAVLAL VGGFDFNQSKFNRATQALRQVGSNIKPFLYTAAMDKGLTLASMLNDVPISRWDAGAGS DWRPKNSPPQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHT ESLALGSASFTPMQVARGYAVMANGGFLIDPYFISKIENDQGGVIFEAKPKIACPECD IPVIYGNTQKSDVLENTNVEEVAVSQEQQNSAVPMPELEQANQALVAQNGTQEYAPHV INTPLAFLIKSALNTNIFGEPGWMGTGWRAARDLKRRDIGGKTGTTNSSKDAWFSGYG PGVVTSVWIGFDDHRRDLGRTTASGAIKDQISGYEGGAKSAQPAWDAYMKAVLEGVPE QPLTPPPGIVTVNIDRSTGQLASGGNSREEYFIEGTQPTQQAVHEVGTTIIDNGETHE LF" gene complement(3649309..3649920) /gene="yrfE" /locus_tag="STM3494" /db_xref="GeneID:1255017" CDS complement(3649309..3649905) /gene="yrfE" /locus_tag="STM3494" /note="similar to E. coli orf, hypothetical protein (AAC76422.1); Blastp hit to AAC76422.1 (186 aa), 92% identity in aa 1 - 186" /codon_start=1 /transl_table=11 /product="putative NTP pyrophosphohydrolase" /protein_id="NP_462397.3" /db_xref="GI:1109557756" /db_xref="GeneID:1255017" /translation="MTTDYTAKILTMSKSLQKPTILKVETVAQSRLFNVESVDLEFSN GVRRVYERMRPSTREAVMIVPIVDEHLILIREYAVGTESYELGFSKGLIDPGETVFEA ANRELKEEVGFGAHNLTFLKKLSMAPSYFSSKMNIVVAEDLYPESLEGDEPEPLPQVR WPLAHLMDLLEDPDFNEARNVSALFLVREWLKAQGRIA" regulatory complement(3649915..3649920) /regulatory_class="ribosome_binding_site" /gene="yrfE" /locus_tag="STM3494" /note="putative RBS for yrfE; RegulonDB:STMS1H003490" gene 3650184..3652327 /gene="yrfF" /locus_tag="STM3495" /db_xref="GeneID:1255018" regulatory 3650184..3650189 /regulatory_class="ribosome_binding_site" /gene="yrfF" /locus_tag="STM3495" /note="putative RBS for yrfF; RegulonDB:STMS1H003491" CDS 3650195..3652327 /gene="yrfF" /locus_tag="STM3495" /note="similar to E. coli putative dehydrogenase (AAC76423.1); Blastp hit to AAC76423.1 (711 aa), 83% identity in aa 1 - 710" /codon_start=1 /transl_table=11 /product="Intracellular growth attenuator protein igaA" /protein_id="NP_462398.1" /db_xref="GI:16766783" /db_xref="GeneID:1255018" /translation="MSTILIFIAALLACSLLAIWRFRVKSRRGSLPWISAFQDAQTRK LLPEERSAVENYLDNLSQIQQVPGPTGASAAPISLTLNAESNSVVILTHSITRYGITT DDPNKWRYYLDSVEVHLPPFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESR GYALQNTASTQASIRGEESEQIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFF CLITPDVFVPWMIGGAILLLAAGLWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQE QINNISLGIIDLIYPAHWQPYITQDLGQQTDIDIYLDRHVARQGRFLSLHDEVKNFPL QHWLRSTVIAIGSLLVLFMLLFWIPLDMPIKFTLSWMKGAQTIEATTVKQLEKAGVRV GDTLHLSGKGMCNIHSGATWSGQSNSPFMPFDCSQIIWNDAPALPLPESDLVNKAMAL SQAVNRQLHPKPEDDSRVSASLRSAIQKSGMVLLDDFGDIVLKTADLCAAEDECVRLK NALVNLGNSKDWNALVKRANAGKLDGVNVLLRPVSAESLENLVTTSTAPFISRETARA AQSLNSPAPGGFLIASDEGSELVDQTWPSTPLYDYPAQEQWSAFQRLAQTLMQTPFSA EGIVTSVYTDANGTQHISLHRIPDKSGWWRYLGTTLLMLAMIVSAVYNGIQAFRRYQR HRTRMADIQEYYESCLNPRLTVSPENLI" gene 3652380..3653060 /gene="yrfG" /locus_tag="STM3496" /db_xref="GeneID:1255019" regulatory 3652380..3652385 /regulatory_class="ribosome_binding_site" /gene="yrfG" /locus_tag="STM3496" /note="putative RBS for yrfG; RegulonDB:STMS1H003492" CDS 3652392..3653060 /gene="yrfG" /locus_tag="STM3496" /note="similar to E. coli putative phosphatase (AAC76424.1); Blastp hit to AAC76424.1 (237 aa), 85% identity in aa 16 - 237" /codon_start=1 /transl_table=11 /product="GMP/IMP nucleotidase" /protein_id="NP_462399.1" /db_xref="GI:16766784" /db_xref="GeneID:1255019" /translation="MHIDIDWQNVDTVLLDMDGTLLDLAFDNYFWQKLVPETYGAQQG ISPQDAQEYIRQQYHAVQHTLNWYCLDYWSERLGLDICAMTTAQGPRAVLRDDTVPFL NALKASGKRRILLTNAHPHNLAVKLEHTGLASHLDLLLSTHTFGYPKEDQRLWRAVTE ETGISAEKTLFIDDSEPILDAAARFGIRYCLGVTNPDSGLAEKHYTRHPSLNDYRRLI PSLM" gene 3653060..3653472 /gene="yrfH" /locus_tag="STM3497" /db_xref="GeneID:1255020" regulatory 3653060..3653065 /regulatory_class="ribosome_binding_site" /gene="yrfH" /locus_tag="STM3497" /note="putative RBS for yrfH; RegulonDB:STMS1H003493" CDS 3653071..3653472 /gene="yrfH" /locus_tag="STM3497" /note="predicted small RNA-binding protein; similar to E. coli orf, hypothetical protein (AAC76425.1); Blastp hit to AAC76425.1 (133 aa), 95% identity in aa 1 - 133" /codon_start=1 /transl_table=11 /product="heat-shock protein" /protein_id="NP_462400.1" /db_xref="GI:16766785" /db_xref="GeneID:1255020" /translation="MKEKSSVEVRLDKWLWAARFYKTRAMAREMIEGGKVHYNGQRSK PSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAVALYEETAESVEKREKMAQAR KLNALTMPHPDRRPDKKERRDLLRFKHGDSE" gene 3653491..3654375 /gene="yrfI" /locus_tag="STM3498" /db_xref="GeneID:1255021" CDS 3653491..3654375 /gene="yrfI" /locus_tag="STM3498" /note="redox regulated chaparone; similar to E. coli orf, hypothetical protein (AAC76426.1); Blastp hit to AAC76426.1 (294 aa), 92% identity in aa 1 - 294" /codon_start=1 /transl_table=11 /product="heat shock protein 33" /protein_id="NP_462401.3" /db_xref="GI:1109557757" /db_xref="GeneID:1255021" /translation="MIMPQHDQLHRYLFENFAVRGELVTVSETLQQILDNHNYPQPVK TVLAELLVATSLLTATLKFAGDITVQLQGDGPLSLAVINGNNQQQMRGVARVQGDIPD NADLKTLVGNGYLVITITPEEGERYQGVVGLEGDTLAACLEDYFLRSEQLPTRLFIRT GDVDGKPAAGGMLLQVMPAQNAQAEDFDHLAMLTETIKSEELLTLPANDVLWRLYHEE EVTLYDPQNVEFKCTCSRERCAGALKTLPDEEVDSILAEEGEIDMHCDYCGNHYLFNA MDIAEIRNNASPADPQVH" gene complement(3654485..3656206) /gene="yhgE" /locus_tag="STM3499" /db_xref="GeneID:1255022" CDS complement(3654485..3656194) /gene="yhgE" /locus_tag="STM3499" /note="similar to E. coli putative transport (AAC76427.1); Blastp hit to AAC76427.1 (574 aa), 56% identity in aa 1 - 574" /codon_start=1 /transl_table=11 /product="DUF4153 domain-containing protein" /protein_id="NP_462402.1" /db_xref="GI:16766787" /db_xref="GeneID:1255022" /translation="MESVALSHTTRWGMLLTGLLQGVLCYLLMAWLVPQNSDWLFYGM PATIALSSMLLLTVVSFKQRALWGWLGLIFVVVLAMSGWLKWQVETVEKWRLAELLWL YGLRLVLMAMLVLPWMQYQLHSQTGSARYPQFYLRLWHNVLTLFIVLVANGLFWLVLL LWSALFRLVGIRFFSTLFFETEAFIYVTIGLITALAVILARTQSRLVAAVQKLLTLIA TGLLPVVSLLALLFIVTLPFTGLEAISARVSAAGLLSTLTLMLLLLVAIVNEPQKRVL PYPRVLRGMISASLCVAPIYMLLAGWALWVRIQQYGWTPDRLYGALTVSVLLVWSFGY LIGLLRRGRDPGEWQGKVILSVSLLTLVILLLLASPVLDVWRISVNSHMARYHSGKIT ADQISLYMLDHSGKPGQEALKSLRDDEAFTQNRKRNRELMTFLQRNKVSPTADDLARV VMIAPGSQKPDAAFWAFVKEQSYSDDSCLEPDACVLVSQDLNGDGQPEQVLYNFIVAE SQVYGLKEGKWTQKAFARLPDGFSKTQLLHAIAGHRLDSAPKAWRDIIVDGQRLDVDY YNE" regulatory complement(3656201..3656206) /regulatory_class="ribosome_binding_site" /gene="yhgE" /locus_tag="STM3499" /note="putative RBS for yhgE; RegulonDB:STMS1H003494" gene 3656520..3658193 /gene="pckA" /locus_tag="STM3500" /db_xref="GeneID:1255023" regulatory 3656520..3656528 /regulatory_class="minus_35_signal" /gene="pckA" /locus_tag="STM3500" /note="putative -35_signal for pckA; RegulonDB:STMLTH004596" regulatory 3656544..3656552 /regulatory_class="minus_10_signal" /gene="pckA" /locus_tag="STM3500" /note="putative -10_signal for pckA; RegulonDB:STMLTH004596" regulatory 3656561..3656566 /regulatory_class="ribosome_binding_site" /gene="pckA" /locus_tag="STM3500" /note="putative RBS for pckA; RegulonDB:STMS1H003495" CDS 3656574..3658193 /gene="pckA" /locus_tag="STM3500" /EC_number="4.1.1.49" /note="phosphoenolpyruvate carboxykinase [ATP]. (SW:PPCK_SALTY)" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate carboxykinase (ATP)" /protein_id="NP_462403.2" /db_xref="GI:1109557758" /db_xref="GeneID:1255023" /translation="MRVNNLTPQDLKAYGINDVQDIVYNPSYDTLYQEELNPGLEGYE RGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTLWWSDKGKGKNDNKPLSQETWQ HLKGLVTHQLSGKRLFIVDAFCGANADTRLSVRFITEVAWQAHFVKNMFIRPTDEELV GFKPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERIQLIGGTWYGGEMKKGMFSVM NYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDG VFNFEGGCYAKTIKLSKEAEPEIYHAIRRDALLENVTVREDGTVDFDDGSKTENTRVS YPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTANQTQYHFLSGFTAKLAG TERGVTEPTPTFSACFGAAFLTLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRIS IKDTRAIIDAILNGSLDNAETFRLPLFDLAIPTELPGVDTHILDPRNTYASPEQWQEK ATALAKLFIENFEKYTDTPAGEALVSAGPKL" gene complement(3658268..3659637) /gene="envZ" /locus_tag="STM3501" /db_xref="GeneID:1255024" CDS complement(3658268..3659620) /gene="envZ" /locus_tag="STM3501" /EC_number="2.7.3.-" /note="osmolarity sensor protein ENVZ. (SW:ENVZ_SALTY)" /codon_start=1 /transl_table=11 /product="two-component system sensor histidine kinase EnvZ" /protein_id="NP_462404.1" /db_xref="GI:16766789" /db_xref="GeneID:1255024" /translation="MRRMRFSPRSSFARTLLLIVTLLFVSLVTTYLVVLNFAILPSLQ QFNKVLAYEVRMLMTDKLQLEDGTQLVVPPAFRREIYRELGISLYTNEAAEEAGLRWA QHYEFLSHQMAQQLGGPTEVRVEVNKSSPVVWLKTWLSPNIWVRVPLTEIHQGDFSPL FRYTLAIMLLAIGGAWLFIRIQNRPLVDLEHAALQVGKGIIPPPLREYGASEVRSVTR AFNHMAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMGEEDGYLAESINKDIEE CNAIIEQFIDYLRTGQEMPMEMADLNSVLGEVIAAESGYEREINTALQAGSIQVKMHP LSIKRAVANMVVNAARYGNGWIKVSSGTESHRAWFQVEDDGPGIKPEQRKHLFQPFVR GDSARSTSGTGLGLAIVQRIIDNHNGMLEIGTSERGGLSIRAWLPVPVARVQGTTKEA " gene complement(3659617..3660468) /gene="ompR" /locus_tag="STM3502" /db_xref="GeneID:1255025" CDS complement(3659617..3660336) /gene="ompR" /locus_tag="STM3502" /note="affecting transcription of ompC and ompF (OmpR family); transcriptional regulatory protein OMPR. (SW:OMPR_SALTY)" /codon_start=1 /transl_table=11 /product="two-component system response regulator OmpR" /protein_id="NP_462405.1" /db_xref="GI:16766790" /db_xref="GeneID:1255025" /translation="MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL TRESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDY IPKPFNPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMP LTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAH PRYIQTVWGLGYVFVPDGSKA" regulatory complement(3659632..3659637) /regulatory_class="ribosome_binding_site" /gene="ompR" /locus_tag="STM3502" /note="putative RBS for envZ; RegulonDB:STMS1H003496" regulatory complement(3660346..3660351) /regulatory_class="ribosome_binding_site" /gene="ompR" /locus_tag="STM3502" /note="putative RBS for ompR; RegulonDB:STMS1H003497" regulatory complement(3660441..3660449) /regulatory_class="minus_10_signal" /gene="ompR" /locus_tag="STM3502" /note="putative -10_signal for ompR; RegulonDB:STMLTH004597" regulatory complement(3660460..3660468) /regulatory_class="minus_35_signal" /gene="ompR" /locus_tag="STM3502" /note="putative -35_signal for ompR; RegulonDB:STMLTH004597" gene 3660546..3661035 /gene="greB" /locus_tag="STM3503" /db_xref="GeneID:1255026" regulatory 3660546..3660551 /regulatory_class="ribosome_binding_site" /gene="greB" /locus_tag="STM3503" /note="putative RBS for greB; RegulonDB:STMS1H003498" CDS 3660562..3661035 /gene="greB" /locus_tag="STM3503" /note="similar to E. coli transcription elongation factor and transcript cleavage (AAC76431.1); Blastp hit to AAC76431.1 (170 aa), 94% identity in aa 13 - 169" /codon_start=1 /transl_table=11 /product="transcription elongation factor GreB" /protein_id="NP_462406.1" /db_xref="GI:16766791" /db_xref="GeneID:1255026" /translation="MKTPLITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSE NADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGDRLK FRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPVGEANWYVNAIEYVK" gene 3661120..3663464 /gene="yhgF" /locus_tag="STM3504" /db_xref="GeneID:1255027" regulatory 3661120..3661125 /regulatory_class="ribosome_binding_site" /gene="yhgF" /locus_tag="STM3504" /note="putative RBS for yhgF; RegulonDB:STMS1H003499" CDS 3661137..3663464 /gene="yhgF" /locus_tag="STM3504" /note="similar to E. coli orf, hypothetical protein (AAC76432.1); Blastp hit to AAC76432.1 (740 aa), 94% identity in aa 1 - 740" /codon_start=1 /transl_table=11 /product="putative RNase R" /protein_id="NP_462407.3" /db_xref="GI:1109557759" /db_xref="GeneID:1255027" /translation="MNDSFCRIIAGEIQANAGQVEAAVRLLDEGNTVPFIARYRKEIT GGLDDTQLRNLETRLGYLRELEDRRQAILKSISEQGKLTDELAGAINATLSKTELEDL YLPYKPKRRTRGQIAIEAGLEPLADLLWNEPSHDPDVEAAKYIDGDKGVADTKAALDG ARYILMERFAEDAALLAKVRDYLWKNAHLVATVVSGKEEEGAKFRDYFDHHEPIANVP SHRALAMFRGRNEGILQLSLNADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKG VVSWTWRIKVLMHLETELMGTVRERAEDEAINVFARNLHDLLMAAPAGLRATMGLDPG LRTGVKVAVVDGTGKLVATDTIYPHTGQAAKAATVIAALCEKYHVELVAIGNGTASRE TERFYLDVQKQFPNVTAQKVIVSEAGASVYSASELAAQEFPDLDVSLRGAVSIARRLQ DPLAELVKIDPKSIGVGQYQHDVSQTQLARKLDAVVEDCVNAVGVDLNTASVPLLTRV AGLTRMMAQNIVAWRDENGQFQNRQQLLKVSRLGPKAFEQCAGFLRINHGDNPLDAST VHPEAYPVVERILAATQQALKDLMGNSNELRHLKAADFTDDKFGVPTVSDIIKELEKP GRDPRPEFKTAQFADGVETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL STKFVDDPHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPGETAARRGGGADRAQG NRPASKAAKPRGRDAQPAGNSAMMDALAAAMGKKR" gene 3663893..3664128 /gene="feoA" /locus_tag="STM3505" /db_xref="GeneID:1255028" regulatory 3663893..3663898 /regulatory_class="ribosome_binding_site" /gene="feoA" /locus_tag="STM3505" /note="putative RBS for feoA; RegulonDB:STMS1H003500" CDS 3663901..3664128 /gene="feoA" /locus_tag="STM3505" /note="similar to E. coli ferrous iron transport protein A (AAC76433.1); Blastp hit to AAC76433.1 (75 aa), 96% identity in aa 1 - 75" /codon_start=1 /transl_table=11 /product="ferrous iron transporter A" /protein_id="NP_462408.1" /db_xref="GI:16766793" /db_xref="GeneID:1255028" /translation="MQFTPDTAWKITGFAREISPAYRQKLLSLGMLPGSSFNVVRVAP LGDPIHIETRRVSLVLRKKDLALIEVEAVSC" gene 3664147..3666465 /gene="feoB" /locus_tag="STM3506" /db_xref="GeneID:1255029" CDS 3664147..3666465 /gene="feoB" /locus_tag="STM3506" /note="FeoB family; ferrous iron transport protein B. (SW:FEOB_SALTY)" /codon_start=1 /transl_table=11 /product="ferrous iron transporter B" /protein_id="NP_462409.1" /db_xref="GI:16766794" /db_xref="GeneID:1255029" /translation="MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ FATTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL YLTLQLLELGIPCIVALNMLDIAEKQQVRIDVDALSTRLGCPVVPLVSTRGRGIEALK LAIDRHNANDNVELVHYAQPLLREADFLADAMAQEMPLQQRRWLGLQMLEGDIYSRAY AGEAAQNLDTSLARLKDEMDDPALHIADARYQCIAAICDVVSNTLTAEPSRFTRAVDK IILNRFLGLPIFLFVMYLMFLLAINIGGALQPLFDAGSVAIFIHGIQWIGYTLHFPDW LTIFLAQGLGGGINTVLPLVPQIGMMYLFLSFLEDSGYMARAAFVMDRLMQALGLPGK SFVPLIVGFGCNVPSVMGARTLDAPRERLMTIMMAPFMSCGARLAIFAVFAAAFFGQN GALAVFSLYVLGIVMAVLTGLMLKHTIMRGEASPFVMELPVYHVPHIKSLIIQTWQRL KGFVLRAGKVIIIVSIFLSAFNSFSLSGKIVDNINDSALASVSRVITPVFKPIGVHED NWQATVGLFTGAMAKEVVVGTLNTLYTAENIQDEAFNPADFHLGDELLGAVDDTWQSL KDTFSLSVLANPIEASKGDGEMATGAMGVMDQKFGSAAAAYSYLIFVLLYVPCISVMG AIARESSRGWMGFSILWGLNIAYSLATLFYQVTSFSQHPTYSLICILAVIVFNVVVLS LLRRARSRVDIELLATRKNVSSCCSGTAGNCH" gene 3666464..3666714 /gene="yhgG" /locus_tag="STM3507" /db_xref="GeneID:1255030" regulatory 3666464..3666469 /regulatory_class="ribosome_binding_site" /gene="yhgG" /locus_tag="STM3507" /note="putative RBS for yhgG; RegulonDB:STMS1H003501" CDS 3666478..3666714 /gene="yhgG" /locus_tag="STM3507" /note="similar to E. coli orf, hypothetical protein (AAC76435.1); Blastp hit to AAC76435.1 (78 aa), 89% identity in aa 1 - 78" /codon_start=1 /transl_table=11 /product="ferrous iron transporter C" /protein_id="NP_462410.1" /db_xref="GI:16766795" /db_xref="GeneID:1255030" /translation="MASLIQVRDLLALRGRMEATQISHTLHAPQPMIDAMLNQLEIMG KAVRIPEEPDGCLSGSCKSCPEGKACLREWWALR" gene 3666939..3667863 /locus_tag="STM3508" /db_xref="GeneID:1255031" regulatory 3666939..3666944 /regulatory_class="ribosome_binding_site" /locus_tag="STM3508" /note="putative RBS for STM3508; RegulonDB:STMS1H003502" CDS 3666949..3667863 /locus_tag="STM3508" /note="similar to E. coli orf, hypothetical protein (AAC75365.1); Blastp hit to AAC75365.1 (296 aa), 67% identity in aa 1 - 296" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462411.1" /db_xref="GI:16766796" /db_xref="GeneID:1255031" /translation="MATSTTSTPHDAVFKQFLCHPDTARDFLEIHLPSTLRQICNLNT LRLESGSFIEEDLRPHYSDILWSLETSEGEGYIYVVIEHQSTPDAHMAFRLMRYAMAA MQRHLEAGHKTLPLVVPMLFYHGNRSPYPFSLCWLDEFADPVMARKLYATAFPLVDIT VVPDDEIMRHRRVALLELIQKHIRQRDLMGLVEQLVALLVKGYANDTQLQSLFNYMMH TGDAARFNTFIRQVAMRIPQHKEKIMTIADRLRQEGHRNGLQQGKQEGQRLAALRIAR SMLNDGFDRDTVLRVTGLAPADLASENH" gene complement(3667899..3668683) /gene="bioH" /locus_tag="STM3509" /db_xref="GeneID:1255032" CDS complement(3667899..3668669) /gene="bioH" /locus_tag="STM3509" /note="biotin biosynthesis; reaction prior to pimeloyl CoA; similar to E. coli biotin biosynthesis; reaction prior to pimeloyl CoA (AAC76437.1); Blastp hit to AAC76437.1 (256 aa), 81% identity in aa 1 - 253" /codon_start=1 /transl_table=11 /product="pimeloyl-[acyl-carrier protein] methyl ester esterase" /protein_id="NP_462412.1" /db_xref="GI:16766797" /db_xref="GeneID:1255032" /translation="MNDIWWQTYGEGNCHLVLLHGWGLNAEVWHCIREELGSHFTLHL VDLPGYGRSSGFGAMTLEEMTAQVAKNAPDQAIWLGWSLGGLVASQMALTHPERVQAL VTVASSPCFSAREGWPGIKPEILGGFQQQLSDDFQRTVERFLALQTLGTETARQDART LKSVVLAQPMPDVEVLNGGLEILKTVDLREALKNVNMPFLRLYGYLDGLVPRKIVPLL DTLWPHSTSQIMAKAAHAPFISHPAAFCQALMTLKSSL" regulatory complement(3668678..3668683) /regulatory_class="ribosome_binding_site" /gene="bioH" /locus_tag="STM3509" /note="putative RBS for bioH; RegulonDB:STMS1H003503" gene 3668695..3669390 /gene="yhgH" /locus_tag="STM3510" /db_xref="GeneID:1255033" regulatory 3668695..3668700 /regulatory_class="ribosome_binding_site" /gene="yhgH" /locus_tag="STM3510" /note="putative RBS for yhgH; RegulonDB:STMS1H003504" CDS 3668707..3669390 /gene="yhgH" /locus_tag="STM3510" /note="similar to E. coli orf, hypothetical protein (AAC76438.1); Blastp hit to AAC76438.1 (243 aa), 85% identity in aa 17 - 243" /codon_start=1 /transl_table=11 /product="DNA utilization protein GntX" /protein_id="NP_462413.1" /db_xref="GI:16766798" /db_xref="GeneID:1255033" /translation="MLTVPGLCWLCRMPLALSHWGICSVCARAVRQRVSLCPQCGLPA AHPSLPCGRCLQKPPPWQRLVSVSDYTPPLSLLVHQLKFTRRSEIAAALARLLLQEVL MARRSTGLQLPDRIVSVPLWSRRHWRRGFNQSDLLCQPLAHWLGCAWDSQTITRVRAT ATQHHLSARLRKRNLKNAFRLELPVQGLHMVIVDDVVTTGSTVAEIAQLLLRNGAATV QVWCLCRTL" gene 3669437..3670024 /gene="yhgI" /locus_tag="STM3511" /db_xref="GeneID:1255034" regulatory 3669437..3669442 /regulatory_class="ribosome_binding_site" /gene="yhgI" /locus_tag="STM3511" /note="putative RBS for yhgI; RegulonDB:STMS1H003505" CDS 3669449..3670024 /gene="yhgI" /locus_tag="STM3511" /note="similar to E. coli orf, hypothetical protein (AAC76439.1); Blastp hit to AAC76439.1 (191 aa), 98% identity in aa 1 - 191" /codon_start=1 /transl_table=11 /product="Fe-S biogenesis protein NfuA" /protein_id="NP_462414.1" /db_xref="GI:16766799" /db_xref="GeneID:1255034" /translation="MIRISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYC PPDAVEATDTALKFDLLTAYVDELSAPYLEDAEIDFVTDQLGSQLTLKAPNAKMRKVA DDAPLMERVEYALQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLK EGIEKQLLNEFPELKGVRDLTEHQRGEHSYY" protein_bind 3670168..3670185 /note="putative binding site for CRP, RegulonDB: STMS1H000104" /bound_moiety="CRP" gene 3670225..3671717 /gene="gntT" /locus_tag="STM3512" /db_xref="GeneID:1255035" regulatory 3670225..3670233 /regulatory_class="minus_35_signal" /gene="gntT" /locus_tag="STM3512" /note="putative -35_signal for gntT; RegulonDB:STMLTH004598" regulatory 3670252..3670260 /regulatory_class="minus_10_signal" /gene="gntT" /locus_tag="STM3512" /note="putative -10_signal for gntT; RegulonDB:STMLTH004598" regulatory 3670391..3670396 /regulatory_class="ribosome_binding_site" /gene="gntT" /locus_tag="STM3512" /note="putative RBS for gntT; RegulonDB:STMS1H003506" CDS 3670401..3671717 /gene="gntT" /locus_tag="STM3512" /note="GntP family; similar to E. coli high-affinity transport of gluconate / gluconate permease (AAC76440.1); Blastp hit to AAC76440.1 (437 aa), 96% identity in aa 1 - 437" /codon_start=1 /transl_table=11 /product="gluconate transporter" /protein_id="NP_462415.1" /db_xref="GI:16766800" /db_xref="GeneID:1255035" /translation="MPLVIVAIGVILLLLLMIRFKMNGFIALVLVALAVGLMQGMPLD KVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVV LTGFTVGFALFYEVGFVLMLPLVFTIAAAANIPLLYVGVPMAAALSVTHGFLPPHPGP TAIATIFHADMGKTLLFGTILAIPTVILAGPVYARFLKGIDKPIPEGLYSAKTFTEEE MPGFGVSVWTSLVPVILMAMRAIAEMILPKGHAFLPVAEFLGDPVMATLIAVLIAMFT FGLNRGRSMDQINDTLVSSIKIIAMMLLIIGGGGAFKQVLVDSGVDKYIASMMHETNV SPLLMAWSIAAVLRIALGSATVAAITAGGIAAPLIATTGVSPELMVIAVGSGSVIFSH VNDPGFWLFKEYFNLTIGETIKSWSMLETIISVCGLIGCLLLGMVV" gene complement(3671836..3673925) /gene="malQ" /locus_tag="STM3513" /db_xref="GeneID:1255036" CDS complement(3671836..3673914) /gene="malQ" /locus_tag="STM3513" /EC_number="2.4.1.25" /note="similar to E. coli 4-alpha-glucanotransferase (amylomaltase) (AAC76441.1); Blastp hit to AAC76441.1 (694 aa), 85% identity in aa 1 - 694" /codon_start=1 /transl_table=11 /product="4-alpha-glucanotransferase" /protein_id="NP_462416.1" /db_xref="GI:16766801" /db_xref="GeneID:1255036" /translation="MENKRLDSAALAAGISPSYINAHGKPQSIGAETKRRLLAAMHGT TTGPQAVVPNVKVYTAGKKMALPVEGRGEFAWLLTTEEGVHYKGRVTGGKKLNLPATL PEGYHTLTLTQDEQRTHCRIIVAPPRCYEPQALLEGKKLWGACVQLYTLRSEKNWGIG DFGDLKSMLVDVATRGGAFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVE DFRLSEEAQAWWQMPATQQKLRQARDAQWVDYATVTALKITALRMAWTRFAARDDAQM AEFRHFIAREGESLYWQAAFDALHAYQVKEDEQRWGWPAWPEAYQSVEYPAVKQFCEA HREEVEFYLWLQWLAWRQFAACWDTCQSFKLPIGLYRDLAVGVAEGGAETWCDRELYC LKASVGAPPDILGPLGQNWGLPPMDPHIIVARAYEPFIDLLRANMQNCGALRIDHVMS LLRLWWIPYGETADQGAYVHYPVDDLLSILALESQRHRCMVIGEDLGTVPVEIVGKLR DSGVYSYKVLWFENDLEKNFRAPGAYPQQSMAVASTHDLPTLRGYWECGDLTLGKALG LYPDEVILRGLYEDRERAKQGLLDALHKYGCLPKRAGHKASLMSMTPTLNRGLQRYIA DSNSGLLGLQPEDWLDMADPVNVPGTSDQYKNWRRKLTATLEQMFADEGVNKLIKDLD KRRKAAAKKK" regulatory complement(3673920..3673925) /regulatory_class="ribosome_binding_site" /gene="malQ" /locus_tag="STM3513" /note="putative RBS for malQ; RegulonDB:STMS1H003507" gene complement(3673924..3676406) /gene="malP" /locus_tag="STM3514" /db_xref="GeneID:1255037" CDS complement(3673924..3676317) /gene="malP" /locus_tag="STM3514" /EC_number="2.4.1.1" /note="similar to E. coli maltodextrin phosphorylase (AAC76442.1); Blastp hit to AAC76442.1 (797 aa), 90% identity in aa 1 - 797" /codon_start=1 /transl_table=11 /product="maltodextrin phosphorylase" /protein_id="NP_462417.1" /db_xref="GI:16766802" /db_xref="GeneID:1255037" /translation="MSQPTFNKDQFQAALTRQWQRFGLLSASDMTPRQWWQAVSGALA ELLSAQPVAQPTKGQRHVNYISMEFLIGRLTGNNLLNLGWYQDVSDVLKAHDINLTDL LEEEVDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVEGKQMEAPD DWHRGSYPWFRHNEALDVQVGIGGKVTKEGRWEPGFVITGQAWDLPVLGYRNGVAQPL RLWQATHAHPFDLTKFNDGAFLRAEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQ CACSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQLSWDDAW AITSKTFAYTNHTLMPEALECWDEKLVKALLPRHMQIIKQINDRFKTLVDNTWPGDKQ VWAKLAVVHDRQVRMANMCVVSGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTN GITPRRWIKQCNPQLAALLDKTLKKEWANDLDQLINLEKYADDAKFRQQYRDIKRANK ERLVKFIKARTGIEISSNAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVP RVFLFGAKAAPGYYLAKNIIFAINKVAEAINNDPAVGDKLKVVFLPDYCVSAAEMLIP AADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVE EVKALKAKGYDPVKWRKKDKVLDAVLKELESGQYSDGDKHAFDQMLHSLGKQGGDPYL VMADFAAYVEAQKQVDALYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQAKR" regulatory complement(3676327..3676332) /regulatory_class="ribosome_binding_site" /gene="malP" /locus_tag="STM3514" /note="putative RBS for malP; RegulonDB:STMS1H003508" protein_bind complement(3676367..3676391) /gene="malP" /locus_tag="STM3514" /note="putative binding site for MalT, RegulonDB: STMS1H000273" /bound_moiety="MalT" regulatory complement(3676379..3676387) /regulatory_class="minus_10_signal" /gene="malP" /locus_tag="STM3514" /note="putative -10_signal for malP; RegulonDB:STMLTH004599" regulatory complement(3676398..3676406) /regulatory_class="minus_35_signal" /gene="malP" /locus_tag="STM3514" /note="putative -35_signal for malP; RegulonDB:STMLTH004599" protein_bind complement(3676402..3676427) /note="putative binding site for MalT, RegulonDB: STMS1H000275" /bound_moiety="MalT" gene 3676747..3679616 /gene="malT" /locus_tag="STM3515" /db_xref="GeneID:1255038" regulatory 3676747..3676755 /regulatory_class="minus_35_signal" /gene="malT" /locus_tag="STM3515" /note="putative -35_signal for malT; RegulonDB:STMLTH004600" protein_bind 3676771..3676791 /gene="malT" /locus_tag="STM3515" /note="putative binding site for CRP, RegulonDB: STMS1H000096" /bound_moiety="CRP" regulatory 3676774..3676782 /regulatory_class="minus_10_signal" /gene="malT" /locus_tag="STM3515" /note="putative -10_signal for malT; RegulonDB:STMLTH004600" regulatory 3676897..3676902 /regulatory_class="ribosome_binding_site" /gene="malT" /locus_tag="STM3515" /note="putative RBS for malT; RegulonDB:STMS1H003509" CDS 3676911..3679616 /gene="malT" /locus_tag="STM3515" /note="binds inducer (maltotriose) and ATP (LysR family); similar to E. coli positive regulator of mal regulon (AAC76443.1); Blastp hit to AAC76443.1 (901 aa), 91% identity in aa 1 - 901" /codon_start=1 /transl_table=11 /product="transcriptional regulator MalT" /protein_id="NP_462418.1" /db_xref="GI:16766803" /db_xref="GeneID:1255038" /translation="MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALVTSPAGYG KTTLVSQWAAGKNELGWYSLDEGDNQQERFASYLIAAIQQATGGHCSTSEAMAQKRQY ASLTSLFAQLFIELAQWHRPLYLVIDDYHLITNPVIHDAMRFFLRHQPENFTLVVLSR NLPQLGIANLRVRDQLLEIGSQQLAFNHQEAKQFFDRRLSSPIEAAESSRMCDDVAGW ATALQLIALSARQNHTSAHHSARRLAGINASHLSDYLVDEVLDNVDVSTRHFLLKSAI LRSMNDALIVRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFSYHPLFGSFLRQRCQW ELAAELPEIHRAAAESWMEQGFPSEAIHHALAAGDAQMLRDILLNHAWGLFNHSELAL LEESLKALPWESLLENPRLVLLQAWLMQSQHRYSEVNTLLARAEQEIKGVMDGTLHAE FNALRAQVAINDGNPEEAERLAKLALDELPLAWFYSRIVATSVHGEVLHCKGDLSQSL SLMQQTEQMARHHDVWHYALWSLIQQSEIQFAQGFLQAAWETQERAFQLIKEQHLEQL PMHEFLVRIRAQLLWAWARLDEAEASARSGIAVLSTFQPQQQLQCLTLLVQCSLARGD LDNARSQLNRLENLLGNGRYHCDWISNADKVRVIYWQLTGDKKSAANWLRHTPKPAFA NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNCNLLLLNQLYWQ SGRKNDAQRVLLDALQLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPEMEQHRAQRI LREINQHHRHKFAHFDEGFVERLLNHPDVPELIRTSPLTQREWQVLGLIYSGYSNEQI AGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMMGYGV" gene complement(3679704..3679992) /locus_tag="STM3516" /db_xref="GeneID:1255039" CDS complement(3679704..3679979) /locus_tag="STM3516" /note="similar to E. coli orf, hypothetical protein (AAC73329.1); Blastp hit to AAC73329.1 (92 aa), 78% identity in aa 1 - 91" /codon_start=1 /transl_table=11 /product="mRNA interferase YafQ" /protein_id="NP_462419.1" /db_xref="GI:16766804" /db_xref="GeneID:1255039" /translation="MGQREIEYSGQFQKDVKRAQKRHKDVGKLKTLMTLLIHHPFPLP AIYKDHPLQGSYSGYRDAHIEPDWILIYKITDECLRFERTGTHADLF" gene complement(3679982..3680256) /locus_tag="STM3517" /db_xref="GeneID:1255040" CDS complement(3679982..3680242) /locus_tag="STM3517" /note="resembles dinJ; similar to E. coli damage-inducible protein J (AAC73330.1); Blastp hit to AAC73330.1 (86 aa), 83% identity in aa 1 - 86" /codon_start=1 /transl_table=11 /product="antitoxin DinJ" /protein_id="NP_462420.1" /db_xref="GI:16766805" /db_xref="GeneID:1255040" /translation="MAANALVRARIDETLKDQAADVLAEMGLTISDLIRITLTKVARE KALPFDLRIPNELTSRTIENSEAGVDIHKAKDADDLFDQLGI" regulatory complement(3679987..3679992) /regulatory_class="ribosome_binding_site" /locus_tag="STM3517" /note="putative RBS for STM3516; RegulonDB:STMS1H003510" regulatory complement(3680251..3680256) /regulatory_class="ribosome_binding_site" /locus_tag="STM3517" /note="putative RBS for STM3517; RegulonDB:STMS1H003511" gene complement(3680351..3681381) /gene="rtcA" /locus_tag="STM3518" /db_xref="GeneID:1255041" CDS complement(3680351..3681370) /gene="rtcA" /locus_tag="STM3518" /EC_number="6.5.1.4" /note="similar to E. coli orf, hypothetical protein (AAC76444.1); Blastp hit to AAC76444.1 (201 aa), 58% identity in aa 3 - 199" /codon_start=1 /transl_table=11 /product="RNA 3'-terminal-phosphate cyclase" /protein_id="NP_462421.1" /db_xref="GI:16766806" /db_xref="GeneID:1255041" /translation="MARIIALDGAQGEGGGQILRSALSLSMITGQPFEMSGIRAGRAK PGLLRQHLTAVRAATEICGAQVNGDELGSQQLRFTPGPIRGGEYRFAIGSAGSCMLVL QTVLPALWFADGSSRVEVHGGTHNQAAPSADFICRVWEPLLARMGISQRTTLIKHGFY PAGGGAAATVVEPAASLRGLTLISRGETLRTTAEALLAAVPYHVGEREVATLEAHFPQ AEKNVVALEGGCGPGNALSLMIQSEQLTELFAAFGVKGTSAEAVANQVAHEARRYLAS PAAVGEHLADQLILPLALAGEGAFTVARASAHLLTNIAVVERFLPVRFSCEATESGYL VRVSD" gene complement(3681374..3682600) /gene="rtcB" /locus_tag="STM3519" /db_xref="GeneID:1255042" CDS complement(3681374..3682591) /gene="rtcB" /locus_tag="STM3519" /note="similar to E. coli orf, hypothetical protein (AAC76446.1); Blastp hit to AAC76446.1 (408 aa), 87% identity in aa 1 - 408" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462422.1" /db_xref="GI:16766807" /db_xref="GeneID:1255042" /translation="MMNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHI AVMPDVHLGKGSTIGSVIPTKGAIIPAAVGVDIGCGMNALRTSLTAADLPENLADLRS AIEAAVPHGRTTGRGHRDVGAWGNPPANVNEKWAQLEAGYQWLTQKYPRFLNTNNYKH LGTLGTGNHFIEICLDETDRVWIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSR DLAYFNEGSEYFDDYLKAVHWAQQFASLNREAMMENALAALQRCVEKPSALDMDEINC HHNYVQKEQHFGEEIYVTRKGAVSARRGEFGIIPGSMGAKSFIVRGLGNEESFCSCSH GAGRVMSRTKAKKLFSVDDQIRATAHVECRKDADVIDEIPMAYKDIDAVMAAQSDLVE IMYALRQVVCVKG" regulatory complement(3681376..3681381) /regulatory_class="ribosome_binding_site" /gene="rtcA" /locus_tag="STM3518" /note="putative RBS for rtcA; RegulonDB:STMS1H003512" regulatory complement(3682595..3682600) /regulatory_class="ribosome_binding_site" /gene="rtcB" /locus_tag="STM3519" /note="putative RBS for rtcB; RegulonDB:STMS1H003513" gene complement(3682667..3682780) /locus_tag="STM3520" /note="pseudogene; tRNA" /pseudo /db_xref="GeneID:1255043" gene complement(3683136..3684694) /locus_tag="STM3521" /db_xref="GeneID:1255044" CDS complement(3683136..3684689) /locus_tag="STM3521" /codon_start=1 /transl_table=11 /product="RNA-binding protein" /protein_id="NP_462423.1" /db_xref="GI:16766808" /db_xref="GeneID:1255044" /translation="MANPLLFRSLLRDAPLANASNQQGAAAFAFTPRHKLAQMVMTGC MNETFYASGQAQLNDVLATAKDLDDLFLAQLAIYGRERGMMKDMPALLTAILAARGSA LLPVVFTRVINNGRMLRNFVQMLRSGVTGRRSLGTRPKKLVQRWLQNASEERLLQASV GNAPSLADIVKMVHPRPQAAWQEAFFAWLIGKPCDKAQLPEKTRALLAFREGDMGAAL PDVSFLLLTNAPLSREQWAQLAQRMSWQTLRMNLNTLARHDVFENATLAASVAQRLAD RAQVRQSWVYPYQLLSAWSNLQSGVPQVIREALAQAMEYALENIPPFRGNVVVCPDVS GSMKSSITGYRKGETSKIRCVDVAGLIAAAVLRNHPQARVLPFECDVVDVRLDARQSV MHNAQKLAAVGGGGTNCSAPLRRLLNERARVDLVIMVSDNESWVDKSRHGSTATMECW IELKKRNPQARLVCIDLLPYGTTQAAERSDILNVGGFSDEVFTVIDNFVNGHYGSAHW LEEIEAVTL" regulatory complement(3684689..3684694) /regulatory_class="ribosome_binding_site" /locus_tag="STM3521" /note="putative RBS for STM3521; RegulonDB:STMS1H003515" gene 3684866..3686462 /gene="rtcR" /locus_tag="STM3522" /db_xref="GeneID:1255045" regulatory 3684866..3684871 /regulatory_class="ribosome_binding_site" /gene="rtcR" /locus_tag="STM3522" /note="putative RBS for rtcR; RegulonDB:STMS1H003516" CDS 3684879..3686462 /gene="rtcR" /locus_tag="STM3522" /note="EBP family; similar to E. coli putative 2-component regulator (AAC76447.1); Blastp hit to AAC76447.1 (532 aa), 84% identity in aa 1 - 527" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_462424.1" /db_xref="GI:16766809" /db_xref="GeneID:1255045" /translation="MRKTVAFGFVGTVLDYAGRGSQRWEKWRPTLCLCQQETLVVHRL ELLYDARSRSLFEGLKKDIASVSPETEVVGVEIAIRNPWDFEEVYACLHDFARSHTFH PEDEDYLIHITTGTHVAQICWFLLAEARYLPARLAQTSPPRKKDKPHSTGDVTIIDLD LSRYNDIATRFAQEREETLNFLKSGIATRNPCFNRMIEQIERVAIRSRSPILLNGPTG AGKSFLARRIYELKLARHQFSGPFVEVNCATLRGDTAMSALFGHVKGAFTGAREERAG LLRSADGGMLFLDEVGELGADEQAMLLKAIEEKRFYPFGSDQQVSSDFQLIAGTVRDL RQRVAEGTFREDLYARINLWTFELPGLRQRQEDIEPNLDYELERHAALTGDSVRFNTE ARRAWLSFATSPQAAWRGNFRELSASVTRMATLADNGRITVETVDDEIARLRYSWNDH RPSALDGLPGIDATALDLFDRMQLENVVAVCRQAKTLSDAGRQLFNVSRQGKATVNDA DRLRKYLARFGLTWDVLQN" gene complement(3686459..3687229) /gene="glpR" /locus_tag="STM3523" /db_xref="GeneID:1255046" CDS complement(3686459..3687217) /gene="glpR" /locus_tag="STM3523" /note="DeoR family; similar to E. coli repressor of the glp operon (AAC76448.1); Blastp hit to AAC76448.1 (252 aa), 93% identity in aa 1 - 252" /codon_start=1 /transl_table=11 /product="DeoR/GlpR family transcriptional regulator" /protein_id="NP_462425.1" /db_xref="GI:16766810" /db_xref="GeneID:1255046" /translation="MKQTQRHDAIIELVKKQGYVSTEELVEHFSVSPQTIRRDLNDLA EQNMILRHHGGAALPSSSVNTPWHDRKATQTEEKERIARKVAAQIPNGSTLFIDIGTT PEAVAHALLGHSNLRIVTNNLNVANTLMAKEDFRIILAGGELRSRDGGIIGEATQDFI AQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVN MGSISMVDAVYTDTLPPPGVMQVLTENHIQLELC" regulatory complement(3687224..3687229) /regulatory_class="ribosome_binding_site" /gene="glpR" /locus_tag="STM3523" /note="putative RBS for glpR; RegulonDB:STMS1H003517" gene complement(3687311..3688141) /gene="glpG" /locus_tag="STM3524" /db_xref="GeneID:1255047" CDS complement(3687311..3688141) /gene="glpG" /locus_tag="STM3524" /note="similar to E. coli protein of glp regulon (AAC76449.1); Blastp hit to AAC76449.1 (276 aa), 88% identity in aa 1 - 275" /codon_start=1 /transl_table=11 /product="rhomboid family serine protease GlpG" /protein_id="NP_462426.1" /db_xref="GI:16766811" /db_xref="GeneID:1255047" /translation="MLMITSFANPRVAQAFVDYMATQGVILTIQQHNQSDIWLADESQ AERVRGELARFIENPGDPRYLAASWQSGQTNSGLRYRRFPFLATLRERAGPVTWIVML ACVLVYIAMSLIGDQTVMVWLAWPFDPVLKFEVWRYFTHIFMHFSLMHILFNLLWWWY LGGAVEKRLGSGKLIVITVISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERD PQSGIYLQRGLIIFALLWIVAGWFDWFGMSMANGAHIAGLIVGLAMAFVDTLNARKRT " gene complement(3688217..3688543) /gene="glpE" /locus_tag="STM3525" /db_xref="GeneID:1255048" CDS complement(3688217..3688543) /gene="glpE" /locus_tag="STM3525" /note="rhodanese; similar to E. coli protein of glp regulon (AAC76450.1); Blastp hit to AAC76450.1 (108 aa), 81% identity in aa 1 - 108" /codon_start=1 /transl_table=11 /product="thiosulfate sulfurtransferase" /protein_id="NP_462427.1" /db_xref="GI:16766812" /db_xref="GeneID:1255048" /translation="MEQFECITVEEAYQKLHQGAAVLVDIRDPQSYAMGHAPQAFHLT NDTLGAFMREHGFDTAVMVMCYHGNSSKGAAQYLLQQGYDAVYSIDGGFEAWHRRFPA DVANGA" protein_bind 3688627..3688647 /note="putative binding site for CRP, RegulonDB: STMS1H000119" /bound_moiety="CRP" gene 3688661..3690250 /gene="glpD" /locus_tag="STM3526" /db_xref="GeneID:1255049" regulatory 3688661..3688669 /regulatory_class="minus_35_signal" /gene="glpD" /locus_tag="STM3526" /note="putative -35_signal for glpD; RegulonDB:STMLTH004601" regulatory 3688685..3688693 /regulatory_class="minus_10_signal" /gene="glpD" /locus_tag="STM3526" /note="putative -10_signal for glpD; RegulonDB:STMLTH004601" protein_bind 3688691..3688711 /gene="glpD" /locus_tag="STM3526" /note="putative binding site for GlpR, RegulonDB: STMS1H000206" /bound_moiety="GlpR" protein_bind 3688701..3688721 /gene="glpD" /locus_tag="STM3526" /note="putative binding site for GlpR, RegulonDB: STMS1H000216" /bound_moiety="GlpR" regulatory 3688733..3688738 /regulatory_class="ribosome_binding_site" /gene="glpD" /locus_tag="STM3526" /note="putative RBS for glpD; RegulonDB:STMS1H003518" CDS 3688742..3690250 /gene="glpD" /locus_tag="STM3526" /EC_number="1.1.5.3" /note="aerobic; similar to E. coli sn-glycerol-3-phosphate dehydrogenase (aerobic) (AAC76451.1); Blastp hit to AAC76451.1 (501 aa), 90% identity in aa 1 - 501" /codon_start=1 /transl_table=11 /product="glycerol-3-phosphate dehydrogenase" /protein_id="NP_462428.1" /db_xref="GI:16766813" /db_xref="GeneID:1255049" /translation="METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSA SSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIR IGLFMYDHLGKRTSLPGSTGVRFGADSVLKPEIVRGFEYSDCWVDDARLVLANAQMVV RKGGEVLTRTRATAARRENGLWIVEAEDIDTGKKYVWQARGLVNATGPWVKQFFDEGM HLPSPYGIRLIKGSHIVVPRVHNQKQAYILQNEDKRIVFVIPWMEEFSIIGTTDVEYK GDPKAVKIEESEINYLLKVYNAHFQKQLGRDDIVWTYSGVRPLCDDESDSPQAITRDY TLDIHDENGKAPLLSVFGGKLTTYRKLAEHAMEKLASYYPGIGPAWTKTCVLPGGDID GSREDYAAKLRRRYPFLTESLARHYSRTYGSNTEWILGEATSLLDLGEDFGHEFYEAE LKYLVDHEWVRRTEDAIWRRTKEGMWLTAEQQSRITQWLAAYVEKHQLSMAS" gene complement(3690297..3690852) /locus_tag="STM3527" /db_xref="GeneID:1255050" CDS complement(3690297..3690842) /locus_tag="STM3527" /note="similar to E. coli orf, hypothetical protein (AAC73602.1); Blastp hit to AAC73602.1 (86 aa), 35% identity in aa 21 - 85" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462429.1" /db_xref="GI:16766814" /db_xref="GeneID:1255050" /translation="MEEVKLYVERVGIDPASGADIRIARRESTSWHKDIVAELINQVL RCGAALIIIAVLTACDDRQVSYFPDYAAIPEQSGIWTWLPVFFPSSASEIEMTFNLDS NLFYADFSVADGDKRAHFESVLGEESVVHYANFSHKSWCKTGKTLWNSEARAKPFFIT QISVDRYRITNHMPGCTKPGE" regulatory complement(3690847..3690852) /regulatory_class="ribosome_binding_site" /locus_tag="STM3527" /note="putative RBS for STM3527; RegulonDB:STMS1H003519" gene complement(3690852..3692416) /locus_tag="STM3528" /db_xref="GeneID:1255051" CDS complement(3690852..3692411) /locus_tag="STM3528" /codon_start=1 /transl_table=11 /product="putative periplasmic phosphate-binding protein" /protein_id="NP_462430.1" /db_xref="GI:16766815" /db_xref="GeneID:1255051" /translation="MGGLRTTGFILPLSQGLADRKMKNANWLFLSIIMAFIGVPLLVN IITIIVGGMWAYISVLENSIPVARSIEEATIIPVALLGAGLIFLCGRIWGKGNASEVN PEWRDCCLLMPALVVLMGWVILMFLTDLNIRAIGCKPIAQVVQTLWLVPRVISFFNGW VWAVLLIPVGSQLCFALGYGGARWGVLRGGAGYTCRNLLVICLLFFGSCAVYQSHLYA VKYPAPESSEYLYFRDYQAHTWGNKLTGLRDEPTLLLTQNWPRLDGATAGLPLYASAF YALTRFPDDICPEDYLENQGTIEAYQNILNGNADLIFVAQPSTAQKQLAEASGVKLVY TPFAREAFVFIVNQNNPVSSLSDVQIRGIFSGRITHWNEVGGEAIDIKPWQRPENSGS QTAMLAKVMKETKLMPAQTTSVATAMGDMVDIVAEYRNTHNAIGYTFRYYATQMHSNK EIKLLAINDVAPTVENIRNGSYPYTVDVYMVTREHPTAETQKLVDWFLSPQGQQLVQD VGYVPLYPAAK" regulatory complement(3692411..3692416) /regulatory_class="ribosome_binding_site" /locus_tag="STM3528" /note="putative RBS for STM3528; RegulonDB:STMS1H003520" gene complement(3692505..3693621) /locus_tag="STM3529" /db_xref="GeneID:1255052" CDS complement(3692505..3693614) /locus_tag="STM3529" /EC_number="1.1.1.6" /EC_number="1.1.5.3" /note="similar to E. coli glycerol dehydrogenase, (NAD) (AAC76927.1); Blastp hit to AAC76927.1 (380 aa), 49% identity in aa 21 - 373" /codon_start=1 /transl_table=11 /product="putative glycerol dehydrogenase" /protein_id="NP_462431.1" /db_xref="GI:16766816" /db_xref="GeneID:1255052" /translation="MVTTAIFPSRYVQGKGALTTHLPQELAALGHKALILQDPVVHNT YRDTVATALHGVIEFDIEVFSSECCDEEIARISARAQEIGADVIVGMGGGKTLDTAKA TGASLRLPIAVVPTLASTDAPCSSLVVIYTPEGKFKRYLMIPRNPTLVLVDSSIIAAA PVRFLVSGIGDALATWFEAEDCRIKGAGNMTTRPGPMTAFELARFCYTTLMRYGRLAK LACEQHQVTPALEHVIEANTLLSGLGFESGGLAAAHAIHNGLTVLPATHKYWHGEKVA FGTLAMLMLTDRAPELIEEVYQFCEDIGLPTTLADIGLAGVSDDELLAVARASCQTGE TIHNEPFTITPEAVQAALRAADAVGQARKKIDLAG" regulatory complement(3693616..3693621) /regulatory_class="ribosome_binding_site" /locus_tag="STM3529" /note="putative RBS for STM3529; RegulonDB:STMS1H003521" gene 3693952..3695286 /locus_tag="STM3530" /note="pseudogene; frameshift; putative permease" /pseudo /db_xref="GeneID:1255053" gene 3695266..3696998 /locus_tag="STM3531" /db_xref="GeneID:1255054" regulatory 3695266..3695271 /regulatory_class="ribosome_binding_site" /locus_tag="STM3530" /note="putative RBS for STM3531; RegulonDB:STMS1H003523" /pseudo CDS 3695283..3696998 /locus_tag="STM3531" /EC_number="4.2.1.9" /EC_number="1.1.5.3" /note="similar to E. coli putative dehydratase (AAC73372.1); Blastp hit to AAC73372.1 (655 aa), 39% identity in aa 86 - 578" /codon_start=1 /transl_table=11 /product="dihydroxy-acid dehydratase" /protein_id="NP_462432.1" /db_xref="GI:16766817" /db_xref="GeneID:1255054" /translation="MSQKCQHARDLWSQLDALRLGMNYSKEDVNKLQVLVDDCYGESH PGSFHLNQLGDEAVLGVHESGGRAVRHHVTDICDGWGQGHDGMNYILASREAIANMVE IHASVVPYDAGILISSCDKSIPAHLIAAARLNLPLLHIPGGSMRPAPNMSTSDLGGIT AKLRKGEIGIQQVEAMQQCGCPTAGACQFMGTASTMQCMSEALGLALPGSALLPSTLA EIRRVARTAGHQALYLAEKNITTHKILTPAAFENAIKVHAAIGGSTNAMIHLPAIAHE LGWELKPELFDRINNEIPYLTNIQPSGEYVTEMMWFAGGVPMVQWYLRDYLDLDVLTV TGRTLGDNLEMLHQSGFFTRNHGYLNNYKVSPEEVIRKPENATKKGSIAVLKGNIAPE GAVIKYAACAPDMHHHTGPARVFNSEEDAQQAIIHNHIEPGDVIFIRYEGAKGSGAPE MLMTTDAIVYDKRLDGKVALITDGRFSGATSGPCVGHVSPEAADGGPIALVEDGDLIE MDVKGRKLNIVGIDGMPKTEEEIRRCLEERRASWKKPDYSNRRGVFKQFTANATSLMA GAWLK" gene 3697030..3697947 /locus_tag="STM3532" /db_xref="GeneID:1255055" regulatory 3697030..3697035 /regulatory_class="ribosome_binding_site" /locus_tag="STM3532" /note="putative RBS for STM3532; RegulonDB:STMS1H003524" CDS 3697042..3697947 /locus_tag="STM3532" /note="similar to E. coli putative lyase/synthase (AAC73371.1); Blastp hit to AAC73371.1 (309 aa), 43% identity in aa 8 - 308" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate synthase family protein" /protein_id="NP_462433.1" /db_xref="GI:16766818" /db_xref="GeneID:1255055" /translation="MTQITKFHGVFPPVPTIVNAQGELDKVGMATLLDHLIASKVNGV LLLGSGGEFCHMTNALRLETAEFCVRHINRRIPVLLGISSTSTQEVIEYGQHADRLEV DAVLVLNPYYARLTDEYIYHHFKTVANNIKSPVILYNFPALTGQDLSVDLITRLAQDH PNIIGIKDTVDNISHIREIINNVRPVRPDFVIFSGYDEYMMDTLILGGNGGIPATANF APQLTCGIYRAWCEKEYETMFGLQRRLSALSTIYSLDSPFFGIIKKAIQLSGVDISTH VMPPVLPANEEHISNLKQILQRAGL" gene complement(3697991..3698746) /locus_tag="STM3533" /db_xref="GeneID:1255056" CDS complement(3697991..3698746) /locus_tag="STM3533" /note="similar to E. coli putative regulator (AAC75308.1); Blastp hit to AAC75308.1 (260 aa), 38% identity in aa 4 - 249" /codon_start=1 /transl_table=11 /product="IclR family transcriptional regulator" /protein_id="NP_462434.1" /db_xref="GI:16766819" /db_xref="GeneID:1255056" /translation="MKKITTSIPALDKIMRVFAYLLECDGATFTQIHQNSGIAKSSTS SLLNGMVEHGLLRQEKDKYYLGLRLYELGNKAAEQYDIKKIALPILEEIRDNTGLTCH LGVLEGDAPIYLLKVESPQAIVIRSWEGKRLSLHSSGLGKVLIAWLSGEELEELLPPD QILTRFTDTTITDVNILKQELAGIRRRGWGYDNEEDSLGVRCIAVPVFNTQGKVIAAL SVSGVTFQIPDDKRESLATLMMDASRSLTRLMC" gene complement(3698924..3701385) /gene="glgP" /locus_tag="STM3534" /db_xref="GeneID:1255057" CDS complement(3698924..3701371) /gene="glgP" /locus_tag="STM3534" /EC_number="2.4.1.1" /note="similar to E. coli glycogen phosphorylase (AAC76453.1); Blastp hit to AAC76453.1 (815 aa), 93% identity in aa 1 - 815" /codon_start=1 /transl_table=11 /product="glycogen phosphorylase" /protein_id="NP_462435.1" /db_xref="GI:16766820" /db_xref="GeneID:1255057" /translation="MNAPFTYASPTLSVEALKHSIAYKLMFTIGKDPVIANKHEWLNA TLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGRTLSNALLSLGIYDDVKGAL EAMGLDLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNI VDGRQKESPDYWLEYGNPWEFKRHNTRYKVLFGGRIQQEGKKARWIETEEILAVAYDQ IIPGYDTDATNTLRLWNAQASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTY SGRELRLRQEYFLVSATVQDILHRHYQLHKTYENLADKIAIHLNDTHPVLSIPELMRL LIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYF LKTVQEQYPNDTSLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLF ADFAKIFPTRFCNVTNGVTPRRWLALANPPLSDVLDENIGRTWRTDLSQLSELKQHCD YPLVNHAVRQAKLENKKRLAVVIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVI TRYNRIKENPEADWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKV VFIPNYSVSLAQVIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMQ EHIGEENIFIFGNTAEEVEALRRQGYKPRDYYEKDEELHQVLTQIGSGVFNPEEPGRY RDLVDSLINFGDHYQVLADYRSYVDCQDKVDELYRRPEEWTTKAMLNIANMGYFSSDR TIKEYAENIWHIDPVRL" regulatory complement(3701380..3701385) /regulatory_class="ribosome_binding_site" /gene="glgP" /locus_tag="STM3534" /note="putative RBS for glgP; RegulonDB:STMS1H003525" gene complement(3701391..3702835) /gene="glgA" /locus_tag="STM3535" /db_xref="GeneID:1255058" CDS complement(3701391..3702824) /gene="glgA" /locus_tag="STM3535" /EC_number="2.4.1.21" /note="glycogen synthase. (SW:GLGA_SALTY)" /codon_start=1 /transl_table=11 /product="starch synthase" /protein_id="NP_462436.1" /db_xref="GI:16766821" /db_xref="GeneID:1255058" /translation="MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDVRVLLPGF PDIRRGIPDAHVVSRRDTFAGKISLLFGHYNGVGIYLIDAPHLYERPGSPYHDTNLYA YTDNVLRFALLGWVGCEMACGLDPFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTV HNLAYQGMFYAKHMDDIELPWSFFNMHGLEFNGQLSFLKAGLYYADHITAVSPTYARE ITEPQFAYGMEGLLRQRHLEGRLSGILNGVDEKIWNPESDLLLASRYTRDTLEEKAEN KRQLQIAMGLKVNDKVPLFAVVSRLTNQKGLDLVLEALPGLLEQGGQLALLGAGDPVL QEGFLAAAAEHPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTL PLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRF VQRQAMAMDFSWQVAAKSYRELYYRLK" gene complement(3702824..3704278) /gene="glgC" /locus_tag="STM3536" /db_xref="GeneID:1255059" CDS complement(3702824..3704119) /gene="glgC" /locus_tag="STM3536" /EC_number="2.7.7.27" /note="glucose-1-phosphate adenylyltransferase. (SW:GLGC_SALTY)" /codon_start=1 /transl_table=11 /product="glucose-1-phosphate adenylyltransferase" /protein_id="NP_462437.1" /db_xref="GI:16766822" /db_xref="GeneID:1255059" /translation="MVSLEKNDRVMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPA VHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGWSLFSEEMNEFVDLL PAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKG ARCTVACMPVPIKEATAFGVMAVDESDKIIDFVEKPANPPAMPGDASKSLASMGIYVF DADYLYELLAADDKDDASSHDFGKDIIPKITREGMAYAHPFPLSCVQSDPQAEPYWRD VGTLEAYWKANLDLASVTPELDMYDQNWPIRTHMESLPPAKFVQDRSGSHGMTLNSLV SGGCIISGSVVVQSVLFPRVRINSFCNIDSAVLLPEVWVGRSCRLRRCVIDRACIIPE GMVIGENAEEDARRFYRSEEGIVLVTREMLRKLQVKQER" regulatory complement(3702830..3702835) /regulatory_class="ribosome_binding_site" /gene="glgA" /locus_tag="STM3535" /note="putative RBS for glgA; RegulonDB:STMS1H003526" regulatory complement(3704126..3704131) /regulatory_class="ribosome_binding_site" /gene="glgC" /locus_tag="STM3536" /note="putative RBS for glgC; RegulonDB:STMS1H003527" gene complement(3704134..3706118) /gene="glgX" /locus_tag="STM3537" /db_xref="GeneID:1255060" CDS complement(3704134..3706110) /gene="glgX" /locus_tag="STM3537" /EC_number="3.2.1.-" /note="similar to E. coli part of glycogen operon, a glycosyl hydrolase, debranching enzyme (AAC76456.1); Blastp hit to AAC76456.1 (657 aa), 85% identity in aa 1 - 657" /codon_start=1 /transl_table=11 /product="glycogen-debranching enzyme GlgX" /protein_id="NP_462438.1" /db_xref="GI:16766823" /db_xref="GeneID:1255060" /translation="MTQLAIGEATPHGATYDGHGVNFTLFSAHAERVELCVFDSRGNE RRYDLPGRRGDVWHGYLAGARPGLRYGYRVHGPWQPAQGHRFNPAKLLLDPYARRVEG ELKDHPLLHGGHDEPDYRDNAAVAPKSVVISDHYDWEDDAAPRTPWGKTVIYEAHVKG LTYLHPELPQEIRGTYKALGHPVMVAYFKQLGITALELLPVAQFASEPRLQRMGLTNY WGYNPMAMFALHPAWASSPETALDEFRDAVKALHRAGIEVILDIVLNHSAELDLDGPT FSLRGIDNRSYYWIRDDGDYHNWTGCGNTLNLSHPGVVEYACECLRYWVETCHVDGFR FDLASVMGRTPTFRQDAPLFAAIKACPVLSTVKLIAEPWDIGEGGYQVGNFPPPFAEW NDHFRDAARRFWLPRNLTTGEFACRFAASSDVFKRNGRAPGASVNLLTAHDGFTLRDC VCFNQKHNEANGEENRDGTNSNYSDNHGKEGLGGPLDLMERRRDSIHALLATLLLSQG TPMLLAGDEHGHSQHGNNNAYCQDNALTWLDWQQANRGLTTFTAALIRLRQQIPALTG NSWWEEGDGNVRWLNKNAQPLSADEWQNGPKLMQILLSDRFLIAINATLEVTDIVLPE GEWRAVPPFAGEDNPVITAVWQGPAHGLCVFQRG" regulatory complement(3704254..3704262) /regulatory_class="minus_10_signal" /gene="glgC" /locus_tag="STM3536" /note="putative -10_signal for glgC; RegulonDB:STMLTH004602" regulatory complement(3704270..3704278) /regulatory_class="minus_35_signal" /gene="glgC" /locus_tag="STM3536" /note="putative -35_signal for glgC; RegulonDB:STMLTH004602" gene complement(3706107..3708307) /gene="glgB" /locus_tag="STM3538" /db_xref="GeneID:1255061" CDS complement(3706107..3708293) /gene="glgB" /locus_tag="STM3538" /EC_number="2.4.1.18" /note="similar to E. coli 1,4-alpha-glucan branching enzyme (AAC76457.1); Blastp hit to AAC76457.1 (728 aa), 93% identity in aa 1 - 728" /codon_start=1 /transl_table=11 /product="1,4-alpha-glucan branching enzyme" /protein_id="NP_462439.1" /db_xref="GI:16766824" /db_xref="GeneID:1255061" /translation="MSSRIDRDVINALIAGHFADPFSVLGMHQTQAGLEVRALLPDAT DVWVIEPKTGRKVGKLECLDARGFFCGVLPRRKNFFRYQLAVTWHGQQNLIDDPYRFG PLIQEMDAWLLSEGTHLRPYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFNYWD GRRHPMRLRKESGIWELFIPGAHNGQLYKFELLDANGNLRIKADPYAFEAQMRPETAS MICGLPEKVTPGEERQKANQFDAPISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYA KWMGFTHLELLPVNEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFINAAHAAGLNVIL DWVPGHFPSDEFSLAEFDGTHLYEHSDPREGYHQDWNTLIYNYGRREVSNYLVGNALY WMERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRIIGEQV PGAVSMAEESTDFSGVTRPPETGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLT FGMLYNHTENFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLL FMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRDLNHTYRHHKALHELDFDAY GFEWLVVDDNERSVLIFVRRDKAGNEIIVASNFTPVPRHDYRFGINQPGRWREILNTD SMHYHGSNTGNGGVVHSDEIESHGRQHSLNLTLPPLATIWLMREGE" regulatory complement(3706113..3706118) /regulatory_class="ribosome_binding_site" /gene="glgX" /locus_tag="STM3537" /note="putative RBS for glgX; RegulonDB:STMS1H003528" regulatory complement(3708302..3708307) /regulatory_class="ribosome_binding_site" /gene="glgB" /locus_tag="STM3538" /note="putative RBS for glgB; RegulonDB:STMS1H003529" gene complement(3708640..3709761) /gene="asd" /locus_tag="STM3539" /db_xref="GeneID:1255062" CDS complement(3708640..3709746) /gene="asd" /locus_tag="STM3539" /EC_number="1.2.1.11" /note="aspartate-semialdehyde dehydrogenase. (SW:DHAS_SALTY)" /codon_start=1 /transl_table=11 /product="aspartate-semialdehyde dehydrogenase" /protein_id="NP_462440.1" /db_xref="GI:16766825" /db_xref="GeneID:1255062" /translation="MKNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQFGQAA PTFGDTSTGTLQDAFDLDALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASTL RMKDDAIIILDPVNQDVITDGLNNGVKTFVGGNCTVSLMLMSLGGLFAHNLVDWVSVA TYQAASGGGARHMRELLTQMGQLYGHVADELATPSSAILDIERKVTALTRSGELPVDN FGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTASVIPVDGLCVRVGALRCHS QAFTIKLKKEVSIPTVEELLAAHNPWAKVVPNDRDITMRELTPAAVTGTLTTPVGRLR KLNMGPEFLSAFTVGDQLLWGAAEPLRRMLRQLA" regulatory complement(3709756..3709761) /regulatory_class="ribosome_binding_site" /gene="asd" /locus_tag="STM3539" /note="putative RBS for asd; RegulonDB:STMS1H003530" gene 3709870..3710253 /gene="yhgN" /locus_tag="STM3540" /db_xref="GeneID:2673721" regulatory 3709870..3709875 /regulatory_class="ribosome_binding_site" /gene="yhgN" /locus_tag="STM3540" /note="putative RBS for yhgN; RegulonDB:STMS1H003531" CDS 3709873..3710253 /gene="yhgN" /locus_tag="STM3540" /note="similar to E. coli orf, hypothetical protein (AAC76459.1); Blastp hit to AAC76459.1 (197 aa), 72% identity in aa 4 - 39" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_452851.1" /db_xref="GI:1109557760" /db_xref="GeneID:2673721" /translation="MRLILPYRASRKSSGDYQGICVRKGIISVAVLLILIMDQRRNLP AFMRVLKHGEAKCRWAIAMHTSIKKPGSDYALPGLRCRYVPVSRPGKHRATGQQDSAQ QLESNHPDNRADRTEDSFHHRPGF" gene complement(3710170..3711523) /gene="gntU" /locus_tag="STM3541" /db_xref="GeneID:1255064" CDS complement(3710170..3711510) /gene="gntU" /locus_tag="STM3541" /note="similar to E. coli low-affinity gluconate transport permease protein, interrupted (AAC76461.1); Blastp hit to AAC76461.1 (332 aa), 96% identity in aa 1 - 331" /codon_start=1 /transl_table=11 /product="gluconate transporter" /protein_id="NP_462442.1" /db_xref="GI:16766827" /db_xref="GeneID:1255064" /translation="MSTLTLVLTAVGSVLLLLFLVMKARMHAFVALMVVSMGAGLFSG MPLDKIAATMEKGMGGTLGFLAIVVALGAMFGKILHETGAVDQIAVKMLKSFGHSRAH YAIGLAGLICALPLFFEVAIVLLISVAFSMARHTGTNLVKLVIPLFAGVAAAAAFLLP GPAPMLLASQMHADFGWMILIGLCAAIPGMIIAGPLWGNFISRYVELHVPEDITEPHL GEGKMPSFGFSLSLILLPLVLVGLKTIAARFVPEGSTAYEWFEFIGHPFTAILVACLV AIYGLAMRQGMPKDKVMEICGHALQPAGIILLVIGAGGVFKQVLVDSGVGPALGEALT GMGLPIAITCFVLAAAVRIIQGSATVACLTAVGLVMPVIEQLNFSGAQMAALSICIAG GSIVVSHVNDAGFWLFGKFTGATEAQTLKTWTMMETILGTVGAIVGMIAFQLLS" gene complement(3711507..3712210) /gene="gntK" /locus_tag="STM3542" /db_xref="GeneID:1255065" CDS complement(3711507..3712040) /gene="gntK" /locus_tag="STM3542" /EC_number="2.7.1.12" /note="thermoresistant; similar to E. coli gluconokinase 2, thermoresistant (AAC76462.1); Blastp hit to AAC76462.1 (162 aa), 96% identity in aa 1 - 161" /codon_start=1 /transl_table=11 /product="gluconokinase" /protein_id="NP_462443.1" /db_xref="GI:16766828" /db_xref="GeneID:1255065" /translation="MSTTNHDHHVYVLMGVSGSGKSAVASAVAHQLHAAFLDGDFLHP RCNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKISLIVCSALKKHYRDLLREGN PNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADERDVLVVDIDQPL EGVVASTIEVINKGSTL" regulatory complement(3711518..3711523) /regulatory_class="ribosome_binding_site" /gene="gntK" /locus_tag="STM3542" /note="putative RBS for gntU; RegulonDB:STMS1H003532" regulatory complement(3712048..3712053) /regulatory_class="ribosome_binding_site" /gene="gntK" /locus_tag="STM3542" /note="putative RBS for gntK; RegulonDB:STMS1H003533" gene complement(3712179..3713181) /gene="gntR" /locus_tag="STM3543" /db_xref="GeneID:1255066" CDS complement(3712179..3713174) /gene="gntR" /locus_tag="STM3543" /note="gntUKR; GalR/LacI family; similar to E. coli regulator of gluconate (gnt) operon (AAC76463.1); Blastp hit to AAC76463.1 (313 aa), 97% identity in aa 1 - 304" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_462444.1" /db_xref="GI:16766829" /db_xref="GeneID:1255066" /translation="MKKKRPVLQDVADRVGVTKMTVSRFLRNPEQVSVALRGKIAAAL DELGYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLRGIEAVTDAHGYQTMLAHYG YKPEMEQERLESMLSWNIDGLILTERTHTPRTLKMIEVAGIPVVELMDSQSPCLDIAV GFDNFEAARQMTAAIIARGHRHIAYLGARLDERTIIKQKGYEQAMRDAGLVPYSVMME QSSSYSSGIELMRQARREYPQLDGIFCTNDDLAVGAAFECQRLGLKIPDDMAIAGFHG HDIGQVMEPRLASVLTPRERMGSIGAERLLARIRGETVTPKMLDLGFTLSPGGSI" regulatory complement(3712183..3712191) /regulatory_class="minus_10_signal" /gene="gntK" /locus_tag="STM3542" /note="putative -10_signal for gntK; RegulonDB:STMLTH004603" regulatory complement(3712202..3712210) /regulatory_class="minus_35_signal" /gene="gntK" /locus_tag="STM3542" /note="putative -35_signal for gntK; RegulonDB:STMLTH004603" regulatory complement(3713176..3713181) /regulatory_class="ribosome_binding_site" /gene="gntR" /locus_tag="STM3543" /note="putative RBS for gntR; RegulonDB:STMS1H003534" gene complement(3713304..3714014) /gene="yhhW" /locus_tag="STM3544" /db_xref="GeneID:1255067" CDS complement(3713304..3713999) /gene="yhhW" /locus_tag="STM3544" /note="similar to E. coli orf, hypothetical protein (AAC76464.1); Blastp hit to AAC76464.1 (231 aa), 93% identity in aa 1 - 231" /codon_start=1 /transl_table=11 /product="quercetin 2,3-dioxygenase" /protein_id="NP_462445.1" /db_xref="GI:16766830" /db_xref="GeneID:1255067" /translation="MIYLRKANDRGHANHGWLDSWHTFSFADYYDPNFMGFSALRVIN DDVIDAGQGFGTHPHKDMEILTYVLEGAVEHQDSMGNKEQVPAGEFQIMSAGTGVRHS EYNPSKTDRLRLYQIWIIPQETGITPRYEQRRFDAAQGKQLVLSPDARDGSLKVHQDM ELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTINGTKATTSDGLAIWDEQAISIHAD SDSEVLLFDLPPV" regulatory complement(3714009..3714014) /regulatory_class="ribosome_binding_site" /gene="yhhW" /locus_tag="STM3544" /note="putative RBS for yhhW; RegulonDB:STMS1H003535" gene complement(3714123..3715172) /gene="yhhX" /locus_tag="STM3545" /db_xref="GeneID:1255068" CDS complement(3714123..3715160) /gene="yhhX" /locus_tag="STM3545" /note="similar to E. coli putative regulator (AAC76465.1); Blastp hit to AAC76465.1 (345 aa), 92% identity in aa 1 - 345" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_462446.1" /db_xref="GI:16766831" /db_xref="GeneID:1255068" /translation="MTLHCAFIGFGKSTTRYHLPYVLNRKDTWHVAHIFRRHAKPEEQ APQYSHIHFTSDLDEVLGDPQVKLVIVCTHADSHFEYAKRALEAGKNVLVEKPFTPTL AEAKVLFDLARSKGLTVTPYQNRRFDSCFLTAKKAIESGKLGKIVEVESHFDYYRPVA ETKPGLPQDGAFYGLGVHTMDQIISLFGRPDHVAYDIRSLRNKANPDDTFEAQLFYGD LKAIVKTSHLVKIDYPKFIVHGTKGSFVKYGIDQQETSLKANIMPGEPGFAADESVGV LEYVNDDGVTVKEEVKPETGDYGRVYDALYQTLTVGTPNYVKESEVLTNLEILERAFE QATPATITLAK" regulatory complement(3715167..3715172) /regulatory_class="ribosome_binding_site" /gene="yhhX" /locus_tag="STM3545" /note="putative RBS for yhhX; RegulonDB:STMS1H003536" gene 3715616..3716117 /gene="yhhY" /locus_tag="STM3546" /db_xref="GeneID:1255069" regulatory 3715616..3715621 /regulatory_class="ribosome_binding_site" /gene="yhhY" /locus_tag="STM3546" /note="putative RBS for yhhY; RegulonDB:STMS1H003537" CDS 3715629..3716117 /gene="yhhY" /locus_tag="STM3546" /note="similar to E. coli orf, hypothetical protein (AAC76466.1); Blastp hit to AAC76466.1 (162 aa), 82% identity in aa 1 - 162" /codon_start=1 /transl_table=11 /product="N-acetyltransferase" /protein_id="NP_462447.1" /db_xref="GI:16766832" /db_xref="GeneID:1255069" /translation="MSEIVIRHAEPKDYDAIRQIHAQPEVYHNMLQVPHPSLEMWQAR LTEQAGVKQLVACIDDIVVGHLSIQVTQRPRRSHVADFGICVDARWHNRGIASALIRT MIDMCDNWLRVDRIELTVFVDNEPAVAVYKKYGFEIEGTGKKYGLRNGEYVDAYFMAR VK" gene 3716376..3717596 /locus_tag="STM3547" /db_xref="GeneID:1255070" regulatory 3716376..3716381 /regulatory_class="ribosome_binding_site" /locus_tag="STM3547" /note="putative RBS for STM3547; RegulonDB:STMS1H003538" CDS 3716382..3717596 /locus_tag="STM3547" /note="ORF 408 (gi|4456874)" /codon_start=1 /transl_table=11 /product="ribokinase" /protein_id="NP_462448.3" /db_xref="GI:1109557761" /db_xref="GeneID:1255070" /translation="MKFERHHRILKELSISGVVKVSNLAKSLKVTKETIRSDLNELAG QGYLTRCHGGAFITLDSLDNVAKNEIAYVLEKYESAQKIKKGLSAMKNNVCVIGSFNV DIISYLPRLPSTGESLLADKFIFSPGGKGCNQALAASYADSDVHFITKVGSDHFSDYA INFINSSKIHKSVIYQTKETQTGTATIMVNGDTGDNVIAIYPGANMTISPDEITIQKE AIVHSDIVLVQLETNYEALQQTIRLAQKNDIPVIINPAPYNDMVNTIIDNIDYITPNE TEAGLLANMAVNDIESAKCAAKIIHQKGVKNTIITLGSKGSLAYDGTQFIYSPAFPAV VKNTAGAGDAFNGALASGLAKGKSLASALCYASAFASLAVETPNASDMPENDSVLHRI QGSHYKQTISTH" gene 3717605..3718373 /locus_tag="STM3548" /db_xref="GeneID:1255071" regulatory 3717605..3717610 /regulatory_class="ribosome_binding_site" /locus_tag="STM3548" /note="putative RBS for STM3548; RegulonDB:STMS1H003539" CDS 3717612..3718373 /locus_tag="STM3548" /note="ORF 245 (gi|4456875)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462449.1" /db_xref="GI:16766834" /db_xref="GeneID:1255071" /translation="MNNTQKKLKVLFIGESWHIHMIHSKGYDSFTSSKYEEGATWLLE CLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKP NALESIKEYVKNGGGLLMIGGYLSFMGIEAKANYKNTVLAEVLPVIMLDGDDRVEKPE GICAEAVSPEHPVVNGFSDYPVFLGYNQAVARDDADVVLTINNDPLLVFGEYQQGKTA CFMSDCSPHWGTQQFMSWPFYTDLWVNTLQFIARK" gene 3718421..3719398 /locus_tag="STM3549" /db_xref="GeneID:1255072" regulatory 3718421..3718426 /regulatory_class="ribosome_binding_site" /locus_tag="STM3549" /note="putative RBS for STM3549; RegulonDB:STMS1H003540" CDS 3718427..3719398 /locus_tag="STM3549" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462450.1" /db_xref="GI:16766835" /db_xref="GeneID:1255072" /translation="MNKNKYSTPLLMLATILAGMLSPMQSAVNGQLGHWLQDGNACAV ISFASGLVVMFFIIIARKETRQQFASIPTLIKKRKIPLWNWFAGLCGAMVVFSEGASA SALGVATFQTALISALLLSGLLCDRFGIGVEEKKYFTPWRITGALFAVIATIFVVSPQ WHSTSFILLAILPFLAGLLAGWQPAGNAKVAEATGSMLVSITWNFIVGFCVLGAALAI RIALGHVTIQLPDTWWMYLGGPLGLLSIGLMAILVRGLGLLMLGVASTAGQLLGSVLI DELIPSLGNTVYLVTIIGTLFALVGAIVTTIPEYRASKMAQRIEVSE" gene 3719384..3720429 /locus_tag="STM3550" /db_xref="GeneID:1255073" regulatory 3719384..3719389 /regulatory_class="ribosome_binding_site" /locus_tag="STM3549" /note="putative RBS for STM3550; RegulonDB:STMS1H003541" CDS 3719395..3720429 /locus_tag="STM3550" /note="similar to E. coli putative hydrolase (AAC76404.1); Blastp hit to AAC76404.1 (292 aa), 28% identity in aa 24 - 289, 71% identity in aa 7 - 20" /codon_start=1 /transl_table=11 /product="putative phosphotriesterase" /protein_id="NP_462451.1" /db_xref="GI:16766836" /db_xref="GeneID:1255073" /translation="MKGFLQTVTGPVAHTDMGLTLPHEHLFNDLSSVVDEPHYAFSQQ LVGKKVSADLQWGLKHDPYCCADNMDRKEIDDVIFEINNFMSLGGRTIVDATGSESIG RDASALREVALKTGLNIVASSGPYLEKFESTRIHKPVELLASLIDKELNQGIGETDIR AGMIGEIGVSPAFTQAERNSLRAASLAQCNNPHTAMNIHMPGWLRLGDEVLDIVLEEM NVSPAKVSLAHSDPSGKDVVYQRKMLDRGVWLEFDMIGLDITFPKEGVAPGVQETADA VANLIALGYADQIVLSHDVFLKQMWAKNGGNGWGFVPNVFLAYLAARGVDNDTLRKLC IDNPARLLTA" gene complement(3720474..3722232) /gene="ggt" /locus_tag="STM3551" /db_xref="GeneID:1255074" CDS complement(3720474..3722216) /gene="ggt" /locus_tag="STM3551" /EC_number="2.3.2.2" /note="similar to E. coli gamma-glutamyltranspeptidase (AAC76472.1); Blastp hit to AAC76472.1 (580 aa), 91% identity in aa 2 - 580" /codon_start=1 /transl_table=11 /product="gamma-glutamyltransferase" /protein_id="NP_462452.1" /db_xref="GI:16766837" /db_xref="GeneID:1255074" /translation="MKPTFMRWVAIAALLAGGTFSAVANPPVAPPVSYGVEEDVFHPV RATQGMVASVDAMATQVGVDILKQGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLLR TKDGATTAIDFREMAPAGATRDMFLDDQGNADAKKSLTSHLASGTPGTVAGFSLALEK YGTMPLNKVVRPAMKLAEEGFVVNDALANDLKTYGSEVILNHENSKAIFWKDGEPLKK GDKLVQKNLAKSLEMIAENGPDAFYKGAIADQIAGEMQKNGGLMTKEDLANYKAVERT PISGDYRGYQVFSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMAEAEKYAY ADRSEYLGDPDFVKVPWQALTHKAYAKTLADQIDINKAKPSSQIKPGKLAPYESNQTT HFSVVDKDGNAVAVTYTLNTTFGTGIVAGNTGILLNNQMDDFSAKPGVPNVYGLVGGD ANAVGPKKRPLSSMSPTIVVKEGKTWLVTGSPGGSRIITTVLQMVVNSIDFGMNVAEA TNAPRFHHQWLPDELRVEKGFSPDTLKLLEQKGQKVALKEAMGSTQSIMVGPDGELYG ASDPRSVDDLTAGY" regulatory complement(3722227..3722232) /regulatory_class="ribosome_binding_site" /gene="ggt" /locus_tag="STM3551" /note="putative RBS for ggt; RegulonDB:STMS1H003542" gene 3722330..3722758 /gene="yhhA" /locus_tag="STM3552" /db_xref="GeneID:1255075" regulatory 3722330..3722335 /regulatory_class="ribosome_binding_site" /gene="yhhA" /locus_tag="STM3552" /note="putative RBS for yhhA; RegulonDB:STMS1H003543" CDS 3722342..3722758 /gene="yhhA" /locus_tag="STM3552" /note="similar to E. coli orf, hypothetical protein (AAC76473.1); Blastp hit to AAC76473.1 (146 aa), 66% identity in aa 1 - 146" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462453.1" /db_xref="GI:16766838" /db_xref="GeneID:1255075" /translation="MKRLLLITALLPFAVLAQPINTMNNPNQPGYQIPSQQRMQTQMQ TQQIQQQGMLKQQMQTQARSQQQNLQSQLNANTQRVQQGQPGNGMLGQQTLPNTQGGM LSGSGNPDRMLNHSQPMLQQDSGTPQPDIPLKTISP" gene complement(3722771..3723524) /gene="ugpQ" /locus_tag="STM3553" /db_xref="GeneID:1255076" CDS complement(3722771..3723511) /gene="ugpQ" /locus_tag="STM3553" /EC_number="3.1.4.46" /note="similar to E. coli glycerophosphodiester phosphodiesterase, cytosolic (AAC76474.1); Blastp hit to AAC76474.1 (247 aa), 87% identity in aa 1 - 244" /codon_start=1 /transl_table=11 /product="glycerophosphodiester phosphodiesterase" /protein_id="NP_462454.1" /db_xref="GI:16766839" /db_xref="GeneID:1255076" /translation="MSNWPYPHIVAHRGGGKLAPENTLAAIDVGARYGHTMIEFDAKL SKDGEIFLLHDDNLERTSNGWGVAGELNWQDLLRVDAGGWFSGEFKGEPLPLLSQVAE RCRKHGMMANIEIKPTTGSGRLTGRVVALAARELWAGMTPPLLSSFEIEALEAAQAAA PELPRGLLLDKWREDWRELTTRLGCVSLHLNHKLLDETRVQEIKAAGLRILVYTVNQP QRAAELLRWGVDCICTDRIDDIGPHFQF" gene complement(3723508..3724588) /gene="ugpC" /locus_tag="STM3554" /db_xref="GeneID:1255077" CDS complement(3723508..3724578) /gene="ugpC" /locus_tag="STM3554" /note="ABC superfamily (atp_bind); similar to E. coli ATP-binding component of sn-glycerol 3-phosphate transport system (AAC76475.1); Blastp hit to AAC76475.1 (369 aa), 88% identity in aa 14 - 369" /codon_start=1 /transl_table=11 /product="sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC" /protein_id="NP_462455.1" /db_xref="GI:16766840" /db_xref="GeneID:1255077" /translation="MAGLKLQAVTKSWDGKTQVIQPLTLDVADGEFIVMVGPSGCGKS TLLRMVAGLERVTSGDIWIDRKRVTEMEPKDRGIAMVFQNYALYPHMSVEENMAWGLK IRGMSKAHIEERVREAARILELDGLLKRRPRELSGGQRQRVAMGRAIVREPAVFLFDE PLSNLDAKLRVQMRLELQHLHRRLRTTSLYVTHDQVEAMTLAQRVMVMNKGVAEQIGT PVEVYEKPASRFVASFIGSPAMNLLDGVISASGDRFELPGGLALPIGADYRGHAGRNM TLGIRPEHIALSSQAEGGVPLTVDTLEILGADNLAHGRWGDQKLVVRLAHQQRPAAGS TLWLHLPEHQRHLFDGETGQRV" regulatory complement(3723519..3723524) /regulatory_class="ribosome_binding_site" /gene="ugpQ" /locus_tag="STM3553" /note="putative RBS for ugpQ; RegulonDB:STMS1H003544" gene complement(3724580..3725439) /gene="ugpE" /locus_tag="STM3555" /db_xref="GeneID:1255078" CDS complement(3724580..3725425) /gene="ugpE" /locus_tag="STM3555" /note="ABC superfamily (membrane); similar to E. coli sn-glycerol 3-phosphate transport system, integral membrane protein (AAC76476.1); Blastp hit to AAC76476.1 (281 aa), 91% identity in aa 1 - 281" /codon_start=1 /transl_table=11 /product="glycerol-3-phosphate transporter" /protein_id="NP_462456.1" /db_xref="GI:16766841" /db_xref="GeneID:1255078" /translation="MIENRRGLTIFSHTMLILGIAVILFPLYVAFVAATLDDRAVFET PMTLLPGTQLLENIKTIWVNGVGVNSAPFWLMMLNSFIMAFSITVGKITVSMLSAFAI VWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATF LFRQFFMTLPDELVEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQYLWP LLIITDVNLGTAVAGIKGMIATGEGTTQWNQVMAAMLLTLIPPVVIVLAMQRAFVRGL VDSEK" regulatory complement(3724583..3724588) /regulatory_class="ribosome_binding_site" /gene="ugpE" /locus_tag="STM3555" /note="putative RBS for ugpC; RegulonDB:STMS1H003545" gene complement(3725422..3726325) /gene="ugpA" /locus_tag="STM3556" /db_xref="GeneID:1255079" CDS complement(3725422..3726309) /gene="ugpA" /locus_tag="STM3556" /note="ABC superfamily (membrane); similar to E. coli sn-glycerol 3-phosphate transport system, integral membrane protein (AAC76477.1); Blastp hit to AAC76477.1 (295 aa), 93% identity in aa 1 - 295" /codon_start=1 /transl_table=11 /product="glycerol-3-phosphate transporter permease" /protein_id="NP_462457.1" /db_xref="GI:16766842" /db_xref="GeneID:1255079" /translation="MSSSRPVFRSRWLPYLLVAPQLVITVIFFIWPAGEALWYSLQSV DPFGFSSQFVGLENFVALFHDSYYLDAFWTTIKFSALVTFSGLLVSLFFAALVDYVVR GSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLGEFGYDWNHAQNSGQAMFL VVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFRLSLPLIAPVSFFL LVVNLVYAFFDTFPVIDAATAGGPVQATTTLIYKIYREGFTGLDLSASAAQSVVLMFL VIILTVVQFRYVESKVRYQ" regulatory complement(3725434..3725439) /regulatory_class="ribosome_binding_site" /gene="ugpE" /locus_tag="STM3555" /note="putative RBS for ugpE; RegulonDB:STMS1H003546" regulatory complement(3726320..3726325) /regulatory_class="ribosome_binding_site" /gene="ugpA" /locus_tag="STM3556" /note="putative RBS for ugpA; RegulonDB:STMS1H003547" gene complement(3726373..3727699) /gene="ugpB" /locus_tag="STM3557" /db_xref="GeneID:1255080" CDS complement(3726373..3727689) /gene="ugpB" /locus_tag="STM3557" /note="ABC superfamily (peri_perm); similar to E. coli sn-glycerol 3-phosphate transport system; periplasmic binding protein (AAC76478.1); Blastp hit to AAC76478.1 (438 aa), 91% identity in aa 1 - 438" /codon_start=1 /transl_table=11 /product="sn-glycerol-3-phosphate ABC transporter substrate-binding protein" /protein_id="NP_462458.1" /db_xref="GI:16766843" /db_xref="GeneID:1255080" /translation="MISLRHTALGLALSLAFTGQALAVTTIPFWHSMEGELGKEVDSL AQRFNQANPDYKIVPVYKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIK PVYEVFKDAGINFDESQFVPTVAGYYTDAKSGHLLSQPFNSSTPVLYYNKDAFKKAGL DPEQPPKTWQELADYTAKLRAAGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDG TDAVLEFNKPEQVKHIALLEEMNKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLAN IRQYAKFNYGVGMMPYDADIKGAPQNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKP ENAAEWHQKTGYLPITTAAYELTREQGYYDKNPGADIATRQMLNKPPLPFTKGLRLGN MPQIRTIVDEELESVWTGKKTPQQALDTAVDRGNQLLRRFEKASKS" regulatory complement(3727694..3727699) /regulatory_class="ribosome_binding_site" /gene="ugpB" /locus_tag="STM3557" /note="putative RBS for ugpB; RegulonDB:STMS1H003548" gene complement(3727948..3728322) /locus_tag="STM3558" /db_xref="GeneID:1255081" CDS complement(3727948..3728316) /locus_tag="STM3558" /codon_start=1 /transl_table=11 /product="prophage maintenance system killer protein" /protein_id="NP_462459.1" /db_xref="GI:16766844" /db_xref="GeneID:1255081" /translation="MTLQLISAEEIIQFHDRLLRVTPGVTGMPDPGRAEALMYRVLKQ IEYEGVTDVWLLAAMHLLAISRGHIFNDGNKRTALFITLLFLKRNGISLAANPDFVDM TVDAAAGRLTLEQIAVRLRA" gene complement(3728313..3728548) /gene="yhhV" /locus_tag="STM3559" /db_xref="GeneID:1255082" CDS complement(3728313..3728540) /gene="yhhV" /locus_tag="STM3559" /note="hypothetical protein in livF 5'region. (SW:YHHV_SALTY)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462460.1" /db_xref="GI:16766845" /db_xref="GeneID:1255082" /translation="MFMRTVNYSEARQNLAEVLESAVTGGPVTITRRGHKSAVIISAE EFERYQTARMDDEFAAIMAVHGNELRELADK" regulatory complement(3728317..3728322) /regulatory_class="ribosome_binding_site" /gene="yhhV" /locus_tag="STM3559" /note="putative RBS for STM3558; RegulonDB:STMS1H003549" regulatory complement(3728543..3728548) /regulatory_class="ribosome_binding_site" /gene="yhhV" /locus_tag="STM3559" /note="putative RBS for yhhV; RegulonDB:STMS1H003550" gene complement(3728666..3729389) /gene="livF" /locus_tag="STM3560" /db_xref="GeneID:1255083" CDS complement(3728666..3729379) /gene="livF" /locus_tag="STM3560" /note="ABC superfamily (atp_bind); high-affinity branched-chain amino acid transport ATP-binding protein LIVF. (SW:LIVF_SALTY)" /codon_start=1 /transl_table=11 /product="branched-chain amino acid ABC transporter ATP-binding protein" /protein_id="NP_462461.1" /db_xref="GI:16766846" /db_xref="GeneID:1255083" /translation="MEKTMLTFEKVSAHYGKIQALHDVSLHINQGEIVTLIGANGAGK TTLLGTLCGDPRASSGRVVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLA MGGFFAERDRFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL LDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLS DTGDALLANEAVRSAYLGG" gene complement(3729381..3730161) /gene="livG" /locus_tag="STM3561" /db_xref="GeneID:1255084" CDS complement(3729381..3730148) /gene="livG" /locus_tag="STM3561" /note="ABC superfamily (atp_bind); high-affinity branched-chain amino acid transport ATP-binding protein LIVG. (SW:LIVG_SALTY)" /codon_start=1 /transl_table=11 /product="high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG" /protein_id="NP_462462.1" /db_xref="GI:16766847" /db_xref="GeneID:1255084" /translation="MSQPLLAVNGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGK TTVFNCLTGFYKPTGGTITLRERHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLL VAQHQQLKTGLFSGLLKTPAFRRAQSEALDRAATWLERIGLLEHANRQASNLAYGDQR RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNHHNTTILLIEHDMKLVM GISDRIYVVNQGTPLANGTPEEIRNNPDVIRAYLGEA" regulatory complement(3729384..3729389) /regulatory_class="ribosome_binding_site" /gene="livF" /locus_tag="STM3560" /note="putative RBS for livF; RegulonDB:STMS1H003551" gene complement(3730145..3731439) /gene="livM" /locus_tag="STM3562" /db_xref="GeneID:1255085" CDS complement(3730145..3731422) /gene="livM" /locus_tag="STM3562" /note="ABC superfamily (membrane); high-affinity branched-chain amino acid transport system permeaseprotein LIVM. (SW:LIVM_SALTY)" /codon_start=1 /transl_table=11 /product="high-affinity branched-chain amino acid ABC transporter permease LivM" /protein_id="NP_462463.1" /db_xref="GI:16766848" /db_xref="GeneID:1255085" /translation="MKPMHIAMALFSAAMFFVLAGVFMGVQLELDGTKLVVDTAADIR WQWIFIGTAVVFFFQLLRPMFQKAVKHVSGPKFILPAIDGSTVKQKLFLMALLVIAVA WPFMVSRGSVDIATMTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYY GLGFWTCLPLAGLVSAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGG PNGISQIPKPTLFGLEFSRSTREGGWDTFSNFFGVKYDPSDRVIFLYLVALLLVVLSL FVINRLLRMPLGRAWEALREDEIACRSLGLSPTRIKLTAFTISAAFAGFAGTLFAARQ GFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAVLLVVSRELMRDFNEYSMLMLGG LMVLMMIWRPQGLLPMTRPQLKLKSGQAKGEQA" regulatory complement(3730156..3730161) /regulatory_class="ribosome_binding_site" /gene="livG" /locus_tag="STM3561" /note="putative RBS for livG; RegulonDB:STMS1H003552" gene complement(3731419..3732356) /gene="livH" /locus_tag="STM3563" /db_xref="GeneID:1255086" CDS complement(3731419..3732345) /gene="livH" /locus_tag="STM3563" /note="ABC superfamily (membrane); high-affinity branched-chain amino acid transport system permeaseprotein LIVH. (SW:LIVH_SALTY)" /codon_start=1 /transl_table=11 /product="branched-chain amino acid ABC transporter permease LivH" /protein_id="NP_462464.1" /db_xref="GI:16766849" /db_xref="GeneID:1255086" /translation="MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHG EVYMIGSYVSFMIIAALMMMGIDTSWLLVAAGFIGAIIIASAYGWSIERVAYRPVRNS KRLIALISAIGMSIFLQNYVSLTEGSRDVALPSLFNGQWIVGSSENFSASITTMQAVI WIVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAV AGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGVAEALSSAYLS TEYKDVVSFALLILVLLVMPTGILGRPEVEKV" regulatory complement(3731434..3731439) /regulatory_class="ribosome_binding_site" /gene="livH" /locus_tag="STM3563" /note="putative RBS for livM; RegulonDB:STMS1H003553" regulatory complement(3732351..3732356) /regulatory_class="ribosome_binding_site" /gene="livH" /locus_tag="STM3563" /note="putative RBS for livH; RegulonDB:STMS1H003554" gene complement(3732405..3733570) /gene="livK" /locus_tag="STM3564" /db_xref="GeneID:1255087" CDS complement(3732405..3733514) /gene="livK" /locus_tag="STM3564" /note="ABC superfamily (bind_prot); leucine-specific binding protein precursor (LS-BP). (SW:LIVK_SALTY)" /codon_start=1 /transl_table=11 /product="leucine ABC transporter subunit substrate-binding protein LivK" /protein_id="NP_462465.1" /db_xref="GI:16766850" /db_xref="GeneID:1255087" /translation="MKRKAKTIIAGIVALAVSQGAMADDIKVAIVGAMSGPVAQWGDM EFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIQYVIGHLCS SSTQPASDIYEDEGILMISPGATNPELTQRGYQYIMRTAGLDSSQGPTAAKYILETVK PQRIAIIHDKQQYGEGLARSVQDGLKQGNANIVFFDGITAGEKDFSALIARLQKENID FVYYGGYYPEMGQMLRQARANGLKTQFMGPEGVGNASLSNIAGGAAEGMLVTMPKRYD QDPANKAIVEALKADKKDPSGPYVWITYAAVQSLATAMTRSASHAPLDLVKDLKANGA DTVIGPLKWDEKGDLKGFEFGVFQWHADGSSTVAK" regulatory complement(3733516..3733521) /regulatory_class="ribosome_binding_site" /gene="livK" /locus_tag="STM3564" /note="putative RBS for livK; RegulonDB:STMS1H003555" regulatory complement(3733543..3733551) /regulatory_class="minus_10_signal" /gene="livK" /locus_tag="STM3564" /note="putative -10_signal for livK; RegulonDB:STMLTH004604" regulatory complement(3733562..3733570) /regulatory_class="minus_35_signal" /gene="livK" /locus_tag="STM3564" /note="putative -35_signal for livK; RegulonDB:STMLTH004604" gene 3733936..3734319 /gene="yhhK" /locus_tag="STM3565" /db_xref="GeneID:1255088" CDS 3733936..3734319 /gene="yhhK" /locus_tag="STM3565" /note="similar to E. coli orf, hypothetical protein (AAC76484.1); Blastp hit to AAC76484.1 (127 aa), 82% identity in aa 1 - 126" /codon_start=1 /transl_table=11 /product="GNAT family N-acetyltransferase" /protein_id="NP_462466.1" /db_xref="GI:16766851" /db_xref="GeneID:1255088" /translation="MKLTILRLEHFSAQDQIDLGKIWPEYSASSLSVDETHRIYAARF NERLLGAVRVTLSGTQGALDSLRVREITRRRGVGQYLVEEVIRDNPNVSSWWMADVGV EDRSVMAAFMQALGFTAQHDGWEKR" gene 3734292..3734431 /locus_tag="STM3566" /db_xref="GeneID:1255089" regulatory 3734292..3734297 /regulatory_class="ribosome_binding_site" /locus_tag="STM3566" /note="putative RBS for STM3566; RegulonDB:STMS1H003556" CDS 3734297..3734431 /locus_tag="STM3566" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462467.1" /db_xref="GI:16766852" /db_xref="GeneID:1255089" /translation="MTAGRSAKRKPDGADAYPAYMPGEKIKTTSQFSKNFALQAGGKL " gene complement(3734514..3735715) /gene="livJ" /locus_tag="STM3567" /db_xref="GeneID:1255090" CDS complement(3734514..3735611) /gene="livJ" /locus_tag="STM3567" /note="ABC superfamily (bind_prot); leu/ile/val/thr-binding protein precursor (LIVT-BP). (SW:LIVJ_SALTY)" /codon_start=1 /transl_table=11 /product="high-affinity branched-chain amino acid transporter" /protein_id="NP_462468.1" /db_xref="GI:16766853" /db_xref="GeneID:1255090" /translation="MKGKTLLAGCIALSLSHMAFADDIKVAVVGAMSGPVAQYGDQEF TGAEQAIADINAKGGIKGDKLVAVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSS TQPASDIYEDEGILMITPAATAPELTARGYKLVLRTTGLDSDQGPTAAKYILEKVKPQ RIAIIHDKQQYGEGLARAVQDGLKKGGVNVVFFDGITAGEKDFSTLVARLKKENIDFV YYGGYHPEMGQILRQSRAAGLKTQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYDQV PANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNHSDDPAEIAKYLKGATVDTVM GPLSWDEKGDLKGFEFGVFDWHANGTATDAK" regulatory complement(3735616..3735621) /regulatory_class="ribosome_binding_site" /gene="livJ" /locus_tag="STM3567" /note="putative RBS for livJ; RegulonDB:STMS1H003557" regulatory complement(3735691..3735699) /regulatory_class="minus_10_signal" /gene="livJ" /locus_tag="STM3567" /note="putative -10_signal for livJ; RegulonDB:STMLTH004605" regulatory complement(3735707..3735715) /regulatory_class="minus_35_signal" /gene="livJ" /locus_tag="STM3567" /note="putative -35_signal for livJ; RegulonDB:STMLTH004605" protein_bind complement(3735834..3735846) /note="putative binding site for Lrp, RegulonDB: STMS1H000254" /bound_moiety="Lrp" gene complement(3735939..3736803) /gene="rpoH" /locus_tag="STM3568" /db_xref="GeneID:1255091" CDS complement(3735939..3736793) /gene="rpoH" /locus_tag="STM3568" /note="transcription of heat shock proteins induced by cytoplasmic stress; similar to E. coli RNA polymerase, sigma(32) factor; regulation of proteins induced at high temperatures (AAC76486.1); Blastp hit to AAC76486.1 (284 aa), 96% identity in aa 1 - 284" /codon_start=1 /transl_table=11 /product="RNA polymerase factor sigma-32" /protein_id="NP_462469.1" /db_xref="GI:16766854" /db_xref="GeneID:1255091" /translation="MTKEMQNLALAPVGNLESYIRAANAWPMLSADEERALAERLHYQ GDLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLV SFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARE LGVSSKDVREMESRMAAQDMTFDMSSDDESDSQPMAPVLYLQDKSSNFADGIEDDNWE EQAANRLTDAMQGLDERSQDIIRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMK KLRAAIEA" regulatory complement(3736798..3736803) /regulatory_class="ribosome_binding_site" /gene="rpoH" /locus_tag="STM3568" /note="putative RBS for rpoH; RegulonDB:STMS1H003558" protein_bind complement(3736892..3736907) /note="putative binding site for CRP, RegulonDB: STMS1H000111" /bound_moiety="CRP" protein_bind complement(3736896..3736906) /note="putative binding site for DnaA, RegulonDB: STMS1H000138" /bound_moiety="DnaA" protein_bind complement(3736910..3736930) /note="putative binding site for CRP, RegulonDB: STMS1H000043" /bound_moiety="CRP" protein_bind complement(3736990..3737010) /note="putative binding site for CRP, RegulonDB: STMS1H000079" /bound_moiety="CRP" gene complement(3737039..3738109) /gene="ftsX" /locus_tag="STM3569" /db_xref="GeneID:1255092" CDS complement(3737039..3738094) /gene="ftsX" /locus_tag="STM3569" /note="similar to E. coli cell division membrane protein (AAC76487.1); Blastp hit to AAC76487.1 (352 aa), 92% identity in aa 1 - 352" /codon_start=1 /transl_table=11 /product="cell division protein FtsX" /protein_id="NP_462470.1" /db_xref="GI:16766855" /db_xref="GeneID:1255092" /translation="MNRRDAINQIRQFGGRLDRLRKSRGGTGGGRNAPGRQKPTPKPN SRKTNVFNEQVRYAWHGALQDLKSKPLATFLTVMVIAISLTLPSVCYMVYKNVNQAAT QYYPSPQITVYLQKTLDDDAAARVVGQLQAEQGVEKVNYLSREDALGEFRNWSGFGGA LDMLEENPLPAVAVVIPKLDFQSTASLNTLRDRISQINGIDEVRMDDSWFARLAALTG LVGRVSAMIGVLMVAAVFLVIGNSVRLSIFARRDTINVQKLIGATDGFILRPFLYGGA LLGFSGAFLSLILSEILVMRLSSAVTEVAQVFGTKFDLNGLSFDECLLLLLVCSMIGW IAAWLATVQHLRHFTPD" protein_bind complement(3737056..3737066) /gene="ftsX" /locus_tag="STM3569" /note="putative binding site for DnaA, RegulonDB: STMS1H000139" /bound_moiety="DnaA" protein_bind complement(3737080..3737090) /gene="ftsX" /locus_tag="STM3569" /note="putative binding site for DnaA, RegulonDB: STMS1H000137" /bound_moiety="DnaA" gene complement(3738087..3738766) /gene="ftsE" /locus_tag="STM3570" /db_xref="GeneID:1255093" CDS complement(3738087..3738755) /gene="ftsE" /locus_tag="STM3570" /note="similar to E. coli ATP-binding component of a membrane-associated complex involved in cell division (AAC76488.1); Blastp hit to AAC76488.1 (222 aa), 95% identity in aa 1 - 222" /codon_start=1 /transl_table=11 /product="cell division ATP-binding protein FtsE" /protein_id="NP_462471.1" /db_xref="GI:16766856" /db_xref="GeneID:1255093" /translation="MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTL LKLICGIERPSAGKIFFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI PLIIAGASGDDIRRRVSAALDKVGLLDKARNFPIQLSGGEQQRVGIARAVVNKPAVLL ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRQLVLSDGHLHGG LANE" regulatory complement(3738104..3738109) /regulatory_class="ribosome_binding_site" /gene="ftsE" /locus_tag="STM3570" /note="putative RBS for ftsX; RegulonDB:STMS1H003559" gene complement(3738758..3740250) /gene="ftsY" /locus_tag="STM3571" /db_xref="GeneID:1255094" CDS complement(3738758..3740233) /gene="ftsY" /locus_tag="STM3571" /note="similar to E. coli cell division membrane protein (AAC76489.1); Blastp hit to AAC76489.1 (497 aa), 83% identity in aa 1 - 497" /codon_start=1 /transl_table=11 /product="signal recognition particle-docking protein FtsY" /protein_id="NP_462472.1" /db_xref="GI:16766857" /db_xref="GeneID:1255094" /translation="MAKQKKRGFFSWLGFGDKEQKQEQTEEQQIVEEQRPVEPPVETA ADVDAQTPAHSKAETEAFAEEVVDVTEKVQESEKPQPVEPEPAAAIETAAPQIAVERE ELPLPEEVKDEAISPEEWQAEAETVEVIAAVEEEGENAAKFTDEELEAQALAAQAAEE AVMVVPPAEEDAPVEAIVQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKID DDLFEELEEQLLIADVGVETTRKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKV DEPLNIEGKTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQL QVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELK KIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGV IFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED" regulatory complement(3738761..3738766) /regulatory_class="ribosome_binding_site" /gene="ftsE" /locus_tag="STM3570" /note="putative RBS for ftsE; RegulonDB:STMS1H003560" regulatory complement(3740245..3740250) /regulatory_class="ribosome_binding_site" /gene="ftsY" /locus_tag="STM3571" /note="putative RBS for ftsY; RegulonDB:STMS1H003561" gene 3740341..3740955 /gene="yhhF" /locus_tag="STM3572" /db_xref="GeneID:1255095" regulatory 3740341..3740346 /regulatory_class="ribosome_binding_site" /gene="yhhF" /locus_tag="STM3572" /note="putative RBS for yhhF; RegulonDB:STMS1H003562" CDS 3740359..3740955 /gene="yhhF" /locus_tag="STM3572" /note="similar to E. coli orf, hypothetical protein (AAC76490.1); Blastp hit to AAC76490.1 (198 aa), 86% identity in aa 1 - 198" /codon_start=1 /transl_table=11 /product="16S rRNA (guanine(966)-N(2))-methyltransferase RsmD" /protein_id="NP_462473.1" /db_xref="GI:16766858" /db_xref="GeneID:1255095" /translation="MKKPTHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLF NWLAPVMVDAHCLDCFAGSGALGLEALSRYAAQATLLEMDRAVSQQLQKNLATLKANN ARVVNTNTLTFLSQPGTPHHVVFVDPPFRKGLLEETLQLLETQGWLADDALIYVESEV ENGLPPVPANWALYREKVAGQVAYRLYQRDAQGENDVD" gene 3740933..3741214 /gene="yhhL" /locus_tag="STM3573" /db_xref="GeneID:1255096" regulatory 3740933..3740938 /regulatory_class="ribosome_binding_site" /gene="yhhL" /locus_tag="STM3573" /note="putative RBS for yhhL; RegulonDB:STMS1H003563" CDS 3740942..3741214 /gene="yhhL" /locus_tag="STM3573" /note="similar to E. coli orf, hypothetical protein (AAC76491.1); Blastp hit to AAC76491.1 (89 aa), 86% identity in aa 1 - 89" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462474.3" /db_xref="GI:1109557762" /db_xref="GeneID:1255096" /translation="MMLINLGRLLMLFVWAFLILNLVHPFPRPLNIFVNVALVFMALM HGMQLALLKSTIPKAGPQMTTGEKIRIFLFGVFELLVWQKKFKNKK" gene complement(3741236..3741619) /gene="yhhM" /locus_tag="STM3574" /db_xref="GeneID:1255097" CDS complement(3741236..3741607) /gene="yhhM" /locus_tag="STM3574" /note="similar to E. coli putative receptor (AAC76492.1); Blastp hit to AAC76492.1 (119 aa), 84% identity in aa 1 - 116" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462475.1" /db_xref="GI:16766860" /db_xref="GeneID:1255097" /translation="MSKPPLFFIIIIALIVVAASFRFVQQRREKAANEAAPLQQKQVV VSNKREKPVNDRRSRQQEVIPAGTSMRYEVSFKPLNGGLEKTFRLQAQQYHALTVGDQ GTLSYKGTRFVGFVSRTPDNE" regulatory complement(3741614..3741619) /regulatory_class="ribosome_binding_site" /gene="yhhM" /locus_tag="STM3574" /note="putative RBS for yhhM; RegulonDB:STMS1H003564" gene 3741738..3742375 /gene="yhhN" /locus_tag="STM3575" /db_xref="GeneID:1255098" regulatory 3741738..3741743 /regulatory_class="ribosome_binding_site" /gene="yhhN" /locus_tag="STM3575" /note="putative RBS for yhhN; RegulonDB:STMS1H003565" CDS 3741749..3742375 /gene="yhhN" /locus_tag="STM3575" /note="similar to E. coli putative enzyme (AAC76493.1); Blastp hit to AAC76493.1 (208 aa), 91% identity in aa 1 - 208" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462476.1" /db_xref="GI:16766861" /db_xref="GeneID:1255098" /translation="MLWSFIAVCLSAWLYVDASYRGPAWQRWVFKPVTLLLLLLLAWQ APMFDAISYLVLAGLCASLVGDALTLLPRQRLLYAVGAFFLSHLLYTIYFASQMTLSF FWPLPLALLIVGALLIAVIWTRLEELRWPVCTFIAMTLVMVWLAGELWFFRPTAPALS AFTGATLLFIGNIVWLGSHYRRRFRADNAIAAACYFAGHFLIVRSLYL" gene 3742444..3744654 /gene="zntA" /locus_tag="STM3576" /db_xref="GeneID:1255099" regulatory 3742444..3742449 /regulatory_class="ribosome_binding_site" /gene="zntA" /locus_tag="STM3576" /note="putative RBS for zntA; RegulonDB:STMS1H003566" CDS 3742456..3744654 /gene="zntA" /locus_tag="STM3576" /EC_number="3.6.1.-" /note="Pb/Cd/Zn/Hg transporting ATPase; similar to E. coli zinc-transporting ATPase (AAC76494.1); Blastp hit to AAC76494.1 (732 aa), 84% identity in aa 1 - 731" /codon_start=1 /transl_table=11 /product="zinc/cadmium/mercury/lead-transporting ATPase" /protein_id="NP_462477.1" /db_xref="GI:16766862" /db_xref="GeneID:1255099" /translation="MSTPDTDGKKVPPFTSFRLAPAIQKADSCCCEEHCASSAPVSTA MAGTRYTWKISGMDCAACARKVENAVRQIRGVNQAQVLFATEKLVVDADADLRAQIEH AVQKAGYTLRSEDSRDAAPESRLKENLPLITLIIMMAISWGLEQFNHPFGQLAFIATT LVGLYPIARQALRLMKSGSWFAIETLMSVAAIGALFIGATAEAAMVLLLFLIGERLEG WAASRARKGVSALMALKPETATRLRDGVREEVAINTLRPGDIIEVAAGGRLPADGKLV SGFASFDESALTGESIPVERATGDKVPAGATSVDRLVTLEVLSEPGASAIDRILTLIE EAEERRAPIERFIDRFSRIYTPVIMVIALLVTLIPPLMFDGGWQEWIYKGLTLLLIGC PCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRITQVAFDKTGTLTIGKPRVTA IHPASGISEAELLALAAAVEQGATHPLAQAIVREAQTRDLAIPTAESQRTLAGTGIEA QVNGERILICAAGKQPAAAFAGQISELENAGQTVVLVLRNETVVGVLALQDTLRDDAR DAIRDLHQLGVNGVILTGDNPRAAAAIAGELDLAFKAGLLPEDKVRAVTALNQQAPLA MVGDGINDAPAMKAASIGIAMGSGTDVALETADAALTHNRLRGLAQMITLARATHANI RQNITIALGLKAIFLVTTLLGFTGLWLAILADTGATVLVTANALRLLRKN" gene 3744847..3746497 /gene="tcp" /locus_tag="STM3577" /db_xref="GeneID:1255100" regulatory 3744847..3744852 /regulatory_class="ribosome_binding_site" /gene="tcp" /locus_tag="STM3577" /note="putative RBS for tcp; RegulonDB:STMS1H003567" CDS 3744854..3746497 /gene="tcp" /locus_tag="STM3577" /note="methyl-accepting chemotaxis citrate transducer (citrate chemoreceptorprotein). (SW:MCPC_SALTY)" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein II" /protein_id="NP_462478.1" /db_xref="GI:16766863" /db_xref="GeneID:1255100" /translation="MKNIKVITGVIATLGIFSALLLVTGILFYSAVSSDRLNFQNASA LSYQQQELGGSFQTLIETRVTINRVAIRMLKNQRDPASLDAMNTLLTNAGASLNEAEK HFNNYVNSEAIAGKDPALDAQAEASFKQMYDVLQQSIHYLKADNYAAYGNLDAQKAQD DMEQVYDQWLSQNAQLIKLASDQNQSSFTQMQWTLGIILLIVLIVLAFIWLGLQRVLL RPLQRIMAHIQTIADGDLTHEIEAEGRSEMGQLAAGLKTMQQSLIRTVSAVRDNADSI YTGAGEISAGSSDLSSRTEQQASALEETAASMEQLTATVRQNTDNARQATGLAKTASE TARKGGRVVDNVVSTMNDIAESSEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQG RGFAVVAGEVRTLASRSAQAAKEIKVLIENSVSRIDTGSTQVREAGETMKEIVNAVTR VTDIMGEIASASDEQSKGIEQVAQAVSEMDSVTQQNASLVEESAAAAAALEDQANELR QAVAAFRIQKQPRREASPTTLSKGLTPQPAAEQANWESF" gene complement(3746521..3746773) /gene="yhhP" /locus_tag="STM3578" /db_xref="GeneID:1255101" CDS complement(3746521..3746766) /gene="yhhP" /locus_tag="STM3578" /note="similar to E. coli orf, hypothetical protein (AAC76495.1); Blastp hit to AAC76495.1 (81 aa), 91% identity in aa 1 - 79" /codon_start=1 /transl_table=11 /product="sulfurtransferase TusA" /protein_id="NP_462479.1" /db_xref="GI:16766864" /db_xref="GeneID:1255101" /translation="MSDLFSSPDHTLDALGLRCPEPVMMVRKTVRNMQTGETLLIIAD DPATTRDIPGFCTFMEHDLLAQETEGLPYRYLLRKAH" regulatory complement(3746768..3746773) /regulatory_class="ribosome_binding_site" /gene="yhhP" /locus_tag="STM3578" /note="putative RBS for yhhP; RegulonDB:STMS1H003568" gene 3746925..3747601 /gene="yhhQ" /locus_tag="STM3579" /db_xref="GeneID:1255102" regulatory 3746925..3746930 /regulatory_class="ribosome_binding_site" /gene="yhhQ" /locus_tag="STM3579" /note="putative RBS for yhhQ; RegulonDB:STMS1H003569" CDS 3746936..3747601 /gene="yhhQ" /locus_tag="STM3579" /note="similar to E. coli orf, hypothetical protein (AAC76496.1); Blastp hit to AAC76496.1 (221 aa), 89% identity in aa 1 - 221" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462480.1" /db_xref="GI:16766865" /db_xref="GeneID:1255102" /translation="MTPFTQSQRIKALFWLSLFHLLVIISSNYLVQLPITIFGFHTTW GAFSFPFIFLATDLTVRIFGAPLARRIIFAVMIPALLVSYVVSSLFYMGAWQGFAALA NFNLFVARIAAASFMAYALGQILDVHVFNRLRQNRRWWLAPTASTLFGNISDTLAFFF IAFWRSPDAFMAGHWMEIALVDYCFKVLISIIFFLPMYGVLLNMLLKKLADKSEISPL PAS" gene 3747661..3748231 /locus_tag="STM3580" /db_xref="GeneID:1255103" regulatory 3747661..3747666 /regulatory_class="ribosome_binding_site" /locus_tag="STM3580" /note="putative RBS for STM3580; RegulonDB:STMS1H003570" CDS 3747674..3748231 /locus_tag="STM3580" /note="similar to E. coli orf, hypothetical protein (AAC76497.1); Blastp hit to AAC76497.1 (203 aa), 80% identity in aa 19 - 203" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462481.1" /db_xref="GI:16766866" /db_xref="GeneID:1255103" /translation="MRNLVKYAGIGLLVMGLAACDNNDTKASAESAAAESQASGQPIS LMDGKLSFSLPADMTDQSGKLGTQANNMHVYSDPTGQKAVIVIVGDNTDEALPVLANR LLEQQRSRDPQLQVVTNKSIELKGHTLQQLDSIISAKGQTAYSSIVLGKVDNQLLTIQ VTLPADNQQKAQTTAENIINTLVIK" gene complement(3748235..3749494) /gene="yhhS" /locus_tag="STM3581" /db_xref="GeneID:1255104" CDS complement(3748235..3749494) /gene="yhhS" /locus_tag="STM3581" /note="similar to E. coli putative transport (AAC76498.1); Blastp hit to AAC76498.1 (419 aa), 89% identity in aa 1 - 419" /codon_start=1 /transl_table=11 /product="putative MFS family transport protein" /protein_id="NP_462482.3" /db_xref="GI:1109557763" /db_xref="GeneID:1255104" /translation="MIEKKTCCKNAVILMPEPVAEPALNGLRLNLRIVSIVMFNFASY LTIGLPLAVLPGYVHDAMGFSAFWAGLIISLQYFATLLSRPHAGRYADVLGPKKIVVF GLCGCFLSGLGYLLADIASAWPMISLLLLGLGRVILGIGQSFAGTGSTLWGVGVVGSL HIGRVISWNGIVTYGAMAMGAPLGVLCYAWGGLQGLALTVMGVALLAVLLALPRPSVK ANKGKPLPFRAVLGRVWLYGMALALASAGFGVIATFITLFYDAKGWDGAAFALTLFSV AFVGTRLLFPNGINRLGGLNVAMICFGVEIIGLLLVGTAAMPWMAKIGVLLTGMGFSL VFPALGVVAVKAVPPQNQGAALATYTVFMDMSLGVTGPLAGLVMTWAGVPVIYLAAAG LVAMALLLTWRLKKRPPSALPEAASSS" gene 3749572..3750633 /gene="yhhT" /locus_tag="STM3582" /db_xref="GeneID:1255105" regulatory 3749572..3749577 /regulatory_class="ribosome_binding_site" /gene="yhhT" /locus_tag="STM3582" /note="putative RBS for yhhT; RegulonDB:STMS1H003571" CDS 3749584..3750633 /gene="yhhT" /locus_tag="STM3582" /note="similar to E. coli orf, hypothetical protein (AAC76499.1); Blastp hit to AAC76499.1 (376 aa), 89% identity in aa 28 - 376" /codon_start=1 /transl_table=11 /product="permease" /protein_id="NP_462483.1" /db_xref="GI:16766868" /db_xref="GeneID:1255105" /translation="MATAQPDKTGMHILLKLASLVIILAGIHAAADIIVQLLLALFFA IVLNPLVTWFIRRGVKRPLAITIVVVVMLIVLTALVGVLAASLNEFIAMLPKYSKELT RKVLHLQELMPFLNLHMSPERMLRGMDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVF MLFEVRHVPYKLRFALNNPQIHIAGLHRALKGVSHYLALKTLLSLWTGAIIWLGLALM GIQFALMWGVLAFLLNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLVVHMVIG NIMEPRMMGHRLGMSTLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKIWMETTKGGSKL AILLGPGRPKSRLPG" gene 3750665..3751263 /gene="acpT" /locus_tag="STM3583" /db_xref="GeneID:1255106" regulatory 3750665..3750670 /regulatory_class="ribosome_binding_site" /gene="acpT" /locus_tag="STM3583" /note="putative RBS for acpT; RegulonDB:STMS1H003572" CDS 3750685..3751263 /gene="acpT" /locus_tag="STM3583" /note="similar to E. coli orf, hypothetical protein (AAC76500.1); Blastp hit to AAC76500.1 (195 aa), 78% identity in aa 1 - 188" /codon_start=1 /transl_table=11 /product="ACP synthase" /protein_id="NP_462484.1" /db_xref="GI:16766869" /db_xref="GeneID:1255106" /translation="MYQVVLGKVSTLSAGQLPDALIAQAPQGVRRASWLAGRVLLSRA LSPLPEMVYGEQGKPAFSAGAPLWFNLSHSGDTIALLLSDEGEVGCDIEVIRPRDNWR SLANAVFSLGEHAEMEAERPEQQLAAFWRIWTRKEAIVKQRGGSAWQIVSVDSTLPSA LSVSQCQLDTLSLAVCTPTPFTLTPQTITKAL" gene 3751341..3751756 /gene="nikR" /locus_tag="STM3584" /db_xref="GeneID:1255107" regulatory 3751341..3751346 /regulatory_class="ribosome_binding_site" /gene="nikR" /locus_tag="STM3584" /note="putative RBS for nikR; RegulonDB:STMS1H003573" CDS 3751355..3751756 /gene="nikR" /locus_tag="STM3584" /note="similar to E. coli orf, hypothetical protein (AAC76506.1); Blastp hit to AAC76506.1 (133 aa), 98% identity in aa 1 - 133" /codon_start=1 /transl_table=11 /product="nickel-responsive transcriptional regulator" /protein_id="NP_462485.1" /db_xref="GI:16766870" /db_xref="GeneID:1255107" /translation="MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRGALAQEA TQEHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLK GDMGDVQHFADDVIAQRGVRHGHLQCLPKED" gene complement(3751846..3752981) /gene="yhhJ" /locus_tag="STM3585" /db_xref="GeneID:1255108" CDS complement(3751846..3752970) /gene="yhhJ" /locus_tag="STM3585" /note="atp_bind/membrane; similar to E. coli putative transporter (AAC76510.1); Blastp hit to AAC76510.1 (375 aa), 92% identity in aa 2 - 375" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462486.1" /db_xref="GI:16766871" /db_xref="GeneID:1255108" /translation="MRGLRNIYNLGVKELRSLLGDKAMLALIVFAFTISVYSSATVLP GSLHLAPIAIADMDQSQLSNRIVNSFYRPWFLPPEMITATEMDAGLDAGRYTFAVNIP PNFQRDVLAGRQPDIQVNVDATRMSQAFTGNSYIQNIISGEVNSFVARARGDNVQPVS LEIRMRFNPNLDPAWFGGVMAIINNITMLAIVLTGSALIREREHGTVEHLLVMPVTPF EIMMAKVWSMGLVVLVVSGLSLMLMVKGVLGVPIEGSIPLFMLGVALSLFATTSIGIF MGTIARSMPQLGLLMILVLLPLQMLSGGSTPRESMPQAVQDIMLTMPTTHFVSLAQAI LYRGAGLSIVWPQFLTLLAIGGVFFLIALLRFRKTIGTMA" gene complement(3752970..3755666) /gene="yhiH" /locus_tag="STM3586" /db_xref="GeneID:1255109" CDS complement(3752970..3755660) /gene="yhiH" /locus_tag="STM3586" /note="ATPase component; Permease component of an ABC-transporter; similar to E. coli putative ATP-binding component of a transport system, fragment 1 (AAC76511.1); Blastp hit to AAC76511.1 (894 aa), 89% identity in aa 1 - 894" /codon_start=1 /transl_table=11 /product="putative ABC-type multidrug transport system" /protein_id="NP_462487.3" /db_xref="GI:1109557764" /db_xref="GeneID:1255109" /translation="MSQHYGKTVALNNITLDIPARSMVGLIGPDGVGKSSLLSLISGA RVIEQGNVIVLGGDMRDAKHRRDVCPRIAWMPQGLGKNLYHTLSVYENVDFFARLFGH DKAEREARITELLNSTGLAPFRDRPAGKLSGGMKQKLGLCCALIYDPELLILDEPTTG VDPLSRAQFWDLIDSIRQRQTNMSVLVATAYMEEAERFDWLVAMNAGEILATGSAQQL RAKTHSATLEQAFIALLPEAQRQAHKPVVIPPYHAEQEEIAIEAKDLTMRFGKFVAVD HVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGQAWLFGQPVDPNDIDTRRRV GYMSQAFSLYNELTVRQNLELHARLFHIPPAEIPARVAQMIERFMLTEVEDTLPASLP LGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLSRQDKVTIFISTHF MNEAERCDRMSLMHAGKVLASGTPQELVQQRGAANLEAAFISWLQEAAGAAPETPIPP SQTPAASGKPSRQGLSFRRLFSYSRREALELRRDPVRSTLALLGTVILMLIMGYGISM DVENLRFAVLDRDQTVSSQAWSLNLAGSRYFIEQPPLASYDELDRRMRSGELAVAIEI PPNFGRDIARGTPAQIGVWVDGAMPSRAETVKGYVQAMHQSWLQEAASRQPNPVKQVG LLNIETRYRYNPDVKSLPAIVPAVIPLLLMMIPSMLSALSVVREKELGSMINLYVTPT TRSEFLLGKQLPYIALGMLNFLLLCALSVFVFGVPLKGSFLTLTLAALLYVIIATGLG LLISTFMKSQIAAIFGTSIITLIPATQFSGMIDPVASLEGPGRWIGEIYPTSHFLTIA RGTFSKALDLSDLWPLFMPLLIAVPVVMGLSILLLKKQEG" regulatory complement(3752976..3752981) /regulatory_class="ribosome_binding_site" /gene="yhhJ" /locus_tag="STM3585" /note="putative RBS for yhhJ; RegulonDB:STMS1H003574" regulatory complement(3755661..3755666) /regulatory_class="ribosome_binding_site" /gene="yhiH" /locus_tag="STM3586" /note="putative RBS for yhiH; RegulonDB:STMS1H003575" gene complement(3755708..3756786) /gene="yhiI" /locus_tag="STM3587" /db_xref="GeneID:1255110" CDS complement(3755708..3756775) /gene="yhiI" /locus_tag="STM3587" /note="similar to E. coli putative membrane protein (AAC76512.1); Blastp hit to AAC76512.1 (355 aa), 87% identity in aa 1 - 355" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462488.1" /db_xref="GI:16766873" /db_xref="GeneID:1255110" /translation="MDKMKRHLVWWGAGILVAVAAIAWWMLRPAGIPEGFAASNGRIE ATEVDIATKIAGRIDTILVSEGQFVRQGEVLAKMDTRVLQEQRLEAIAQIKEAESAVA AARALLEQRQSEMRAAQSVVKQREAELDSVSKRHVRSRSLSQRGAVSVQQLDDDRAAA ESARAALETAKAQVSAAKAAIEAARTSIIQAQTRVEAAQATERRIVADIDDSELKAPR DGRVQYRVAEPGEVLSAGGRVLNMVDLSDVYMTFFLPTEQAGLLKIGGEARLVLDAAP DLRIPATISFVASVAQFTPKTVETHDERLKLMFRVKARIPPELLRQHLEYVKTGLPGM AWVRLDERVPWPDALSVRLSQ" regulatory complement(3756781..3756786) /regulatory_class="ribosome_binding_site" /gene="yhiI" /locus_tag="STM3587" /note="putative RBS for yhiI; RegulonDB:STMS1H003576" gene complement(3757081..3758289) /gene="yhiN" /locus_tag="STM3588" /db_xref="GeneID:1255111" CDS complement(3757081..3758277) /gene="yhiN" /locus_tag="STM3588" /note="similar to E. coli orf, hypothetical protein (AAC76517.1); Blastp hit to AAC76517.1 (400 aa), 88% identity in aa 1 - 398" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462489.1" /db_xref="GI:16766874" /db_xref="GeneID:1255111" /translation="MERFDAVIIGAGAAGMFCAAQAGQAGSRVLLIDNGKKPGRKILM SGGGRCNFTNLYVEPAAYLSQNPHFCKSALARYTQWDFIDLVDRYGIAWHEKTLGQLF CDDSAQRIVDMLVAECDKGGVTMRLRSEVLSVERDESGFILALNGETVTTQKLVIASG GLSMPGLGASPFGYKIAEQFGLRVLPTRAGLVPFTLHKPLLEQLQTLSGVSVPCVITA RNGTVFRENLLFTHRGLSGPAVLQISSYWQPGELVSINLLPDLSLEDVLNEQRNAHPN QSLKNTLAMHLPKRLVECLQQLGQIPDVSLRQLNVRDQQALVDTLTAWQVQPNGTEGY RTAEVTLGGVDTNELSSRTMEARRVPGLYFIGEVMDVTGWLGGYNFQWAWSSAWACAQ DLAAKR" regulatory complement(3758284..3758289) /regulatory_class="ribosome_binding_site" /gene="yhiN" /locus_tag="STM3588" /note="putative RBS for yhiN; RegulonDB:STMS1H003577" gene 3758493..3760004 /gene="pitA" /locus_tag="STM3589" /db_xref="GeneID:1255112" regulatory 3758493..3758498 /regulatory_class="ribosome_binding_site" /gene="pitA" /locus_tag="STM3589" /note="putative RBS for pitA; RegulonDB:STMS1H003578" CDS 3758508..3760004 /gene="pitA" /locus_tag="STM3589" /note="PiT family; similar to E. coli low-affinity phosphate transport (AAC76518.1); Blastp hit to AAC76518.1 (499 aa), 92% identity in aa 1 - 499" /codon_start=1 /transl_table=11 /product="anion permease" /protein_id="NP_462490.1" /db_xref="GI:16766875" /db_xref="GeneID:1255112" /translation="MLHLFAGLDLHTGLLLLLALAFVLFYEAINGFHDTANAVATVIY TRAMRSQLAVVMAAVFNFFGVLLGGLSVAYAIVHMLPTDLLLNMGSAHGLAMVFSMLL AAIIWNLGTWYFGLPASSSHTLIGAIIGIGLTNAMMTGTSVVDALNIPKVINIFGSLI ISPIVGLVFAGGLIFLLRRYWSGTKKRARIHLTPAEREKKDGKKKPPFWTRIALILSA IGVAFSHGANDGQKGIGLVMLVLIGVAPAGFVVNMNASSYEITRTRDAINNVETYFEQ RPDLLKAVTGVDQLIPSPEPGATEPTEFHCHPANTINALNRAKGMLANVESYDKLSVE QRSQLRRIMLCISDTTDKVVKLPGVSSDDQRLLKKLKTDMLSTIEYAPVWIIMAVALA LGIGTMIGWRRVATTIGEKIGKKGMTYAQGMSAQMTAAVSIGLASYTGMPVSTTHVLS SSVAGTMVVDGGGLQRKTVTSILMAWVFTLPAAIILSGVLYWLSLKII" gene complement(3760144..3760487) /gene="uspB" /locus_tag="STM3590" /db_xref="GeneID:1255113" CDS complement(3760144..3760479) /gene="uspB" /locus_tag="STM3590" /note="involved in stationary-phase resistance to ethanol; similar to E. coli orf, hypothetical protein (AAC76519.1); Blastp hit to AAC76519.1 (111 aa), 95% identity in aa 1 - 111" /codon_start=1 /transl_table=11 /product="universal stress protein UspB" /protein_id="NP_462491.1" /db_xref="GI:16766876" /db_xref="GeneID:1255113" /translation="MISTVSLFWALCVVCIVNMARYFSSLRALLVVLRGCDPLLYQYV DGGGFFTTHGQPNKQVRLVWYIYAQRYRDHHDEEFIRRCERVRRQFLLTSALCGLVVV SLIALMIWH" regulatory complement(3760482..3760487) /regulatory_class="ribosome_binding_site" /gene="uspB" /locus_tag="STM3590" /note="putative RBS for uspB; RegulonDB:STMS1H003579" protein_bind 3760615..3760623 /note="putative binding site for FadR, RegulonDB: STMS1H000178" /bound_moiety="FadR" gene 3760693..3761301 /gene="uspA" /locus_tag="STM3591" /db_xref="GeneID:1255114" regulatory 3760693..3760701 /regulatory_class="minus_35_signal" /gene="uspA" /locus_tag="STM3591" /note="putative -35_signal for uspA; RegulonDB:STMLTH004606" regulatory 3760719..3760727 /regulatory_class="minus_10_signal" /gene="uspA" /locus_tag="STM3591" /note="putative -10_signal for uspA; RegulonDB:STMLTH004606" protein_bind 3760732..3760740 /gene="uspA" /locus_tag="STM3591" /note="putative binding site for FadR, RegulonDB: STMS1H000180" /bound_moiety="FadR" regulatory 3760854..3760859 /regulatory_class="ribosome_binding_site" /gene="uspA" /locus_tag="STM3591" /note="putative RBS for uspA; RegulonDB:STMS1H003580" CDS 3760867..3761301 /gene="uspA" /locus_tag="STM3591" /note="similar to E. coli universal stress protein; broad regulatory function? (AAC76520.1); Blastp hit to AAC76520.1 (144 aa), 99% identity in aa 1 - 144" /codon_start=1 /transl_table=11 /product="universal stress global response regulator UspA" /protein_id="NP_462492.1" /db_xref="GI:16766877" /db_xref="GeneID:1255114" /translation="MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKISLIHVDVNYS DLYTGLIDVNLGDMQKRISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIKKY DMDLVVCGHHQDFWSKLMSSARQLINTVHVDMLIVPLRDEEE" gene 3761619..3763095 /gene="yhiP" /locus_tag="STM3592" /db_xref="GeneID:1255115" regulatory 3761619..3761624 /regulatory_class="ribosome_binding_site" /gene="yhiP" /locus_tag="STM3592" /note="putative RBS for yhiP; RegulonDB:STMS1H003581" CDS 3761626..3763095 /gene="yhiP" /locus_tag="STM3592" /note="similar to E. coli putative transport protein (AAC76521.1); Blastp hit to AAC76521.1 (489 aa), 88% identity in aa 1 - 486" /codon_start=1 /transl_table=11 /product="dipeptide/tripeptide permease" /protein_id="NP_462493.1" /db_xref="GI:16766878" /db_xref="GeneID:1255115" /translation="MNTTAPTGLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQ LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTLVLGAIVLAIGYFMTGMSL LNPDLIFIALGTIAVGNGLFKANPASLLSKCYQPKDPRLDGAFTLFYMSINIGSLLSL SLAPVIADKFGYAVTYNLCGAGLIVALLVYFACRGMVKNIGSEPDHKPLRFRNLLLVL LGTVVMIFLCAWLMHNVKIANLVLIVLSIVVTIFFFREAFRLDKTGRNKMFVAFILMI EAVLFYILYAQMPTSLNFFAINNVHHEILGFAINPVSFQALNPFWVVVASPVLAAIYT RLGSKGKDLTMPMKFTLGMFLCALGFLTAAAGMWFADAQGLTSPWFIVLVYLFQSLGE LLISALGLAMVAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPENITDPLQTL PIYTGVFSKIGLVTLAVTVVMAIMVPWLNRMINTPGTEQ" gene complement(3763187..3763959) /gene="yhiQ" /locus_tag="STM3593" /db_xref="GeneID:1255116" CDS complement(3763187..3763945) /gene="yhiQ" /locus_tag="STM3593" /note="hypothetical 27.4 Kda protein in uspA-prlC intergenic region. (SW:YHIQ_SALTY)" /codon_start=1 /transl_table=11 /product="16S rRNA (guanine(1516)-N(2))-methyltransferase" /protein_id="NP_462494.1" /db_xref="GI:16766879" /db_xref="GeneID:1255116" /translation="MQICLMDETGATDGALSVLAARWGLEHDEDNPMALVMTPQHLEL RKRDEPKLGGIFVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRD AFVLASVGCRVRMLERNPVVAALLDDGLTRGYADADIGGWLQERLQLIHASSLTALTD ITPRPQVVYLDPMFPHRQKSALVKKEMRVFQSLVGPDLDADGLLEPARQLATKRVVVK RPDYAPPLADVATPNAIVTKGHRFDIYAGTPLTE" gene complement(3763952..3766007) /gene="prlC" /locus_tag="STM3594" /db_xref="GeneID:1255117" CDS complement(3763952..3765994) /gene="prlC" /locus_tag="STM3594" /EC_number="3.4.24.70" /note="oligopeptidase A. (SW:OPDA_SALTY)" /codon_start=1 /transl_table=11 /product="oligopeptidase A" /protein_id="NP_462495.1" /db_xref="GI:16766880" /db_xref="GeneID:1255117" /translation="MTNPLLTSFSLPPFSAIKPEHVVPAVTKALADCRAAVEGVVAHG APYSWENLCQPLAEADDVLGRIFSPISHLNSVKNSPELREAYEQTLPLLSEYSTWVGQ HEGLYNAYRDLRDGDHYATLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLS ELGNQYSNNVLDATMGWTKLITDEAELAGMPESALAAAKAQAEAKEQEGYLLTLDIPS YLPVMTYCDNQALREEMYRAYSTRASDQGPNAGKWDNSPVMEEILALRHELAQLLGFE NYAHESLATKMAENPQQVLDFLTDLAKRARPQGEKELAQLRAFAKAEFGVEELQPWDI AYYSEKQKQHLYSISDEQLRPYFPENKAVNGLFEVVKRIYGITAKERTDVDVWHPEVR FFELYDENNELRGSFYLDLYAREHKRGGAWMDDCVGQMRKADGTLQKPVAYLTCNFNR PVNGKPALFTHDEVITLFHEFGHGLHHMLTRIETAGVSGISGVPWDAVELPSQFMENW CWEPEALAFISGHYETGEPLPKELLDKMLAAKNYQAALFILRQLEFGLFDFRLHAEFN PQQGAKILETLFEIKKQVAVVPSPTWGRFPHAFSHIFAGGYAAGYYSYLWADVLAADA YSRFEEEGIFNRETGQSFLDNILTRGGSEEPMELFKRFRGREPQLDAMLEHYGIKG" regulatory complement(3763954..3763959) /regulatory_class="ribosome_binding_site" /gene="yhiQ" /locus_tag="STM3593" /note="putative RBS for yhiQ; RegulonDB:STMS1H003582" regulatory complement(3766002..3766007) /regulatory_class="ribosome_binding_site" /gene="prlC" /locus_tag="STM3594" /note="putative RBS for prlC; RegulonDB:STMS1H003583" gene complement(3766176..3767454) /locus_tag="STM3595" /db_xref="GeneID:1255118" CDS complement(3766176..3767447) /locus_tag="STM3595" /codon_start=1 /transl_table=11 /product="phosphoesterase PA-phosphatase" /protein_id="NP_462496.1" /db_xref="GI:16766881" /db_xref="GeneID:1255118" /translation="MKLHITVLASSLALAMPALAKDIPLSQAESIAKSVTPDSASVAF NDLEAQWLTQLRKALQGDTAALTRDALAQMRQNSIQADNAWLQASGYDFHTTENQQMG ITLLSAFNTLPEAVLKDNLATVTAINHDADVNTRHQALADAESVEYLYFLSDAMGPRL GRAFLAAYDKGELGKAAALIKASEVSTGAAKKYFHYPRPYQVPGNTIHLTPDDVVVKD GHPYTAGGGAFPSGHTNTGYTDALLMAEMIPERFDALVIRGARYGYSRLVLGVHYPLD VMGARMVAQRNVAHYLNDPYYRTLFNEARAQLREALVKECGTTIVECAASTGKDDPYR DPAMHTFYRFTMTYNLPQQKGEHQPLKIPKGADVLLQTALPNLSPAQRQALMEETALP AGYPLSGETEDQQFWQRLDLSAAYEMARKTR" regulatory complement(3767449..3767454) /regulatory_class="ribosome_binding_site" /locus_tag="STM3595" /note="putative RBS for STM3595; RegulonDB:STMS1H003584" gene 3767641..3768500 /gene="yhiR" /locus_tag="STM3596" /db_xref="GeneID:1255119" regulatory 3767641..3767646 /regulatory_class="ribosome_binding_site" /gene="yhiR" /locus_tag="STM3596" /note="putative RBS for yhiR; RegulonDB:STMS1H003585" CDS 3767658..3768500 /gene="yhiR" /locus_tag="STM3596" /note="similar to E. coli orf, hypothetical protein (AAC76524.1); Blastp hit to AAC76524.1 (280 aa), 92% identity in aa 1 - 280" /codon_start=1 /transl_table=11 /product="23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ" /protein_id="NP_462497.1" /db_xref="GI:16766882" /db_xref="GeneID:1255119" /translation="MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKEKPFLYLDTHAG AGRYQLGSEHAERTGEYLEGIARIWQQDDLPAELEPYISVVKHFNRSGQLRYYPGSPL IARQLLREQDSLQLTELHPSDFPLLRAEFQKDNRARVERADGYQQLKAKLPPVSRRGL ILIDPPYEMKTDYQAVVSGISEGYKRFATGTYALWYPVVLRQQIKRMIHELEATGIRK ILQIELAIRPDSDQRGMTASGMIVVNPPWKLEQQMNNVLPWLHSRLAPNGHGHTSVSW IVPE" gene 3768594..3769957 /gene="gor" /locus_tag="STM3597" /db_xref="GeneID:1255120" regulatory 3768594..3768599 /regulatory_class="ribosome_binding_site" /gene="gor" /locus_tag="STM3597" /note="putative RBS for gor; RegulonDB:STMS1H003586" CDS 3768605..3769957 /gene="gor" /locus_tag="STM3597" /EC_number="1.8.1.7" /note="similar to E. coli glutathione oxidoreductase (AAC76525.1); Blastp hit to AAC76525.1 (450 aa), 94% identity in aa 1 - 450" /codon_start=1 /transl_table=11 /product="glutathione-disulfide reductase" /protein_id="NP_462498.1" /db_xref="GI:16766883" /db_xref="GeneID:1255120" /translation="MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVN VGCVPKKVMWHAAQIREAIHLYGPDYGFDTTINQFDWSKLIASRTAYIDRIHTSYDNV LGKNNVDVIKGFARFVDAKTIEVNGETITADHILIATGGRPSHPEIPGVEYGIDSDGF FALSALPERVAVVGAGYIAVELAGVINALGAKTHLFVRKHAPLRSFDPMISETLVEVM NAEGPQLHTHAVPKAVVKNADGSLTLELEDGRSETVDCLIWAIGREPSTDNINLAAAG VKTNEKGYIIVDKFQNTNVEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKPEEHL DYSNIPTVVFSHPPIGTVGLSEPQAREQYGDEQVKVYKSSFTAMYTAVTTHRQPCRMK LVCVGPEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTASEEFVTMR " gene complement(3770004..3771054) /locus_tag="STM3598" /db_xref="GeneID:1255121" CDS complement(3770004..3771047) /locus_tag="STM3598" /EC_number="3.5.1.1" /EC_number="1.8.1.7" /note="similar to E. coli periplasmic L-asparaginase II (AAC75994.1); Blastp hit to AAC75994.1 (348 aa), 46% identity in aa 22 - 348" /codon_start=1 /transl_table=11 /product="putative L-asparaginase" /protein_id="NP_462499.1" /db_xref="GI:16766884" /db_xref="GeneID:1255121" /translation="MKIRVFMATVLLLISHCVFSTTSLPHIVILATGGTIAGTAANNT QTAGYKSGELGVQTLINAVPEMNNIARVDGEQVANIGSENMTSDIILKLSQKVNALLA RDDVDGVVITHGTDTLDETAYFLNLTVKSDKPVVFTAAMRPASAISADGAMNLLEAVT VAADPNAKGRGVMVVLNDRIGSARFVTKTNATTLDTFKAPEEGYLGVIVNGQPQFETR VEKIHTLRSVFDVRNIKKLPNVVIIYGYQDDPEYMYDAAIAHHADGIIYAGTGAGSVS VRSDAGIKKAEKAGIIVVRASRTGNGVVPLDKGQPGLVSDSLNPAKARVLLMTALTQT RNPELIQSYFSTY" regulatory complement(3771049..3771054) /regulatory_class="ribosome_binding_site" /locus_tag="STM3598" /note="putative RBS for STM3598; RegulonDB:STMS1H003587" gene complement(3771106..3772433) /locus_tag="STM3599" /db_xref="GeneID:1255122" CDS complement(3771106..3772425) /locus_tag="STM3599" /note="similar to E. coli anaerobic dicarboxylate transport (AAC77098.1); Blastp hit to AAC77098.1 (433 aa), 42% identity in aa 1 - 433" /codon_start=1 /transl_table=11 /product="C4-dicarboxylate ABC transporter" /protein_id="NP_462500.1" /db_xref="GI:16766885" /db_xref="GeneID:1255122" /translation="MFWTELCFILVALMIGARIGGVFLGMVGGLGVGVMVFIFGLTPS TPPIDVILIILSVVLAAASLQASGGLDLLVKLAEKILRRHPRYITLLAPFICYIFTFM SGTGHVVYSLLPVISEVARDSGIRPERPLSISVIASQQAITASPISAAMAAMIGLMAP LGVSISTIMMICVPATLIGVAMGAIATFNKGKELKDDPEYQRRLAEGLIKPAQKESKN TVVTSRAKLSVALFLTSAIVIVLLGLIPALRPMVETAKGLQPLSMSAAIQITMLSFAC LIVLLCRPQVDQIISGTVFRAGALAIVCAFGLAWMSETFVNGHIALIKAEVQTLLQQH TWLIAIMMFFVSAMVSSQAATTLILLPLGLALGLPAYALIGSWPAVNGYFFIPVAGQC LAALAFDDTGTTRIGKYVLNHSFMRPGLVNVIVSVIVGLLIGKMVLA" regulatory complement(3772428..3772433) /regulatory_class="ribosome_binding_site" /locus_tag="STM3599" /note="putative RBS for STM3599; RegulonDB:STMS1H003588" gene complement(3772479..3773335) /locus_tag="STM3600" /db_xref="GeneID:1255123" CDS complement(3772479..3773324) /locus_tag="STM3600" /note="ribokinase family; similar to E. coli putative kinase (AAC76399.1); Blastp hit to AAC76399.1 (261 aa), 30% identity in aa 7 - 261" /codon_start=1 /transl_table=11 /product="fructoselysine 6-kinase" /protein_id="NP_462501.1" /db_xref="GI:16766886" /db_xref="GeneID:1255123" /translation="MSISVLGIGDNVVDKYLHSGIMYPGGNALNFAVYAKLADIPSAF MGAFGNDDAAQHVQDVLHQLQIDISHSRHYTGENGYACIRLSHGDRQFVASNKNGVLR EHPFSLSDDDLRYISQFTLVHSSINGHLESELEKIKQQTVLLSFDFSGRGTDDYFEKV CPWVDYGFISCSGLSPDEIKVKLNKLYRYGCRHIIATCGHEKVYYFSGADYLEWQPAY IEPVDTLGAGDAFLTGFLLSILQSGMAEPDKESVLRAMRQGGKSAAQVLSHYGAFGFG KPFAQ" regulatory complement(3773330..3773335) /regulatory_class="ribosome_binding_site" /locus_tag="STM3600" /note="putative RBS for STM3600; RegulonDB:STMS1H003589" gene complement(3773388..3774372) /locus_tag="STM3601" /db_xref="GeneID:1255124" CDS complement(3773388..3774365) /locus_tag="STM3601" /note="similar to E. coli putative transport protein (AAC76396.1); Blastp hit to AAC76396.1 (347 aa), 28% identity in aa 42 - 303" /codon_start=1 /transl_table=11 /product="putative phosphosugar isomerase" /protein_id="NP_462502.1" /db_xref="GI:16766887" /db_xref="GeneID:1255124" /translation="MMGMKETVSNIVTSQAEKGGVKHVYYVACGGSYAAFYPAKAFLE KEAKALTVGLYNSGEFINNPPVALGENAVVVVASHKGNTPETIKAAEIARQHGAPVIG LTWIMDSPLVAHCDYVETYTFGDGKDIAGEKTMKGLLSAVELLQQTEGYAHYDDFQDG VSKINRIVWRACEQVAERAQAFAQEYKDDKVIYTVASGAGYGAAYLQSICIFMEMQWI HSACIHSGEFFHGPFEITDANTPFFFQFSEGNTRAVDERALNFLKKYGRRIEVVDAKE LGLSTIKTTVIDYFNHSLFNNVYPVYNRALAEARQHPLTTRRYMWKVEY" regulatory complement(3774367..3774372) /regulatory_class="ribosome_binding_site" /locus_tag="STM3601" /note="putative RBS for STM3601; RegulonDB:STMS1H003590" gene complement(3774541..3775265) /locus_tag="STM3602" /db_xref="GeneID:1255125" CDS complement(3774541..3775260) /locus_tag="STM3602" /note="similar to E. coli putative transcriptional regulator (AAC76400.1); Blastp hit to AAC76400.1 (265 aa), 28% identity in aa 27 - 260" /codon_start=1 /transl_table=11 /product="GntR family transcriptional regulator" /protein_id="NP_462503.1" /db_xref="GI:16766888" /db_xref="GeneID:1255125" /translation="MIEQPDSKSAKPLYKQLEAALKEAIARGEYKPGQQIPTENELSV RWQVSRVTVRKALDALTRENLLTRVSGKGTFVSGEKFQRSMTGIMSFSELCQSQGRRP GSRTIKSVFESVDDETKALLNMNDGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLD EDLNNHSLYECLREKYHLWFTHSRKMIELVYASFEVAHYLGVNEGYPLILIKSEMIDN KGELSCVSQQLIVGDKIRFTV" regulatory complement(3775260..3775265) /regulatory_class="ribosome_binding_site" /locus_tag="STM3602" /note="putative RBS for STM3602; RegulonDB:STMS1H003591" gene 3775568..3777235 /gene="treF" /locus_tag="STM3603" /db_xref="GeneID:1255126" regulatory 3775568..3775573 /regulatory_class="ribosome_binding_site" /gene="treF" /locus_tag="STM3603" /note="putative RBS for treF; RegulonDB:STMS1H003592" CDS 3775586..3777235 /gene="treF" /locus_tag="STM3603" /EC_number="3.2.1.28" /note="similar to E. coli cytoplasmic trehalase (AAC76544.1); Blastp hit to AAC76544.1 (549 aa), 92% identity in aa 1 - 549" /codon_start=1 /transl_table=11 /product="alpha,alpha-trehalase" /protein_id="NP_462504.1" /db_xref="GI:16766889" /db_xref="GeneID:1255126" /translation="MLNQKLNPTPSEDLTIDVDLLYETDPCELKLDEMIEAEPEPEMI EGLPASDALTPADRYLELFEHVQSTKLFPDSKTFPDCAPKMDPLDILIRYRKVRRHRD FDLRRFVENHFWLPETLSSEYVSNPENSLKEHIDQLWPILTREPQDHIPWSSLLALPQ SYIVPGGRFSETYYWDSYFTMLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYY LSRSQPPVFALMVELFEEDGVRGARRYLDHLKMEYAFWMDGAESLALNQAYRHVVRMP DGSLLNRYWDDRDTPRDESWLEDVETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRD AGRLASIRTTQFIPIDLNAFLYKLESAIANISALKGERDTEALFRQKASDRRAAVNHY LWDDENGCYRDYDWRREEMALFSAASIVPLYVGMANHEQADRLANVVRSRLLTPGGIM ATEYETGEQWDKPNGWAPLQWMAIQGFKRYGDDMLGDEIAHNWLKTVNHFYQEHHKLI EKYHISGGTPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP" gene complement(3777248..3778842) /locus_tag="STM3604" /db_xref="GeneID:1255127" CDS complement(3777248..3778837) /locus_tag="STM3604" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462505.1" /db_xref="GI:16766890" /db_xref="GeneID:1255127" /translation="MTNSASQATRAPFEHSLGIIRQASIEILLLLGIHTTEGKEPRWF MEQLEQARLNLGGWGAVAKKLRINDAQLSQFMLQLRHLQQHVPQYDSGQEVSENQLLA ALRFVTSLEHLRQQQPLLTYQTELEEPDQEAHLEAQRQLRAIELTLKALIARAWPDRA SLNHYLKQHFGPDRLRQWLKQGEDQHALEGMLFSELALMVVDKKLFARHYVRIFNDAS ALTLFAESRTTLRMFLDDCRLARNEVIARQPLTSAQLMLLNVQYQQIVRPIQRAYAEK RTRVNPASFLLADERELRQFWETARLKDRQAGGDKHEISESIEPPRKRPPRTPEEREQ LISGALWGAVGVMTLAILAGAFWLFSSSSPGSDNGQAPAMAQDEPPREAPSARETLNH MGITWDAFTMRAAIERNDTRVTALFLQGGMNWQLAWTEQAFAAGHTEVLQLLLRYPAL MDEVKPCRRFITTLSHDMSSGAPLTAMHKTYLQTFCTVPAVVTRQQHDTEQARLRAQA RPSADNKKWLKIQSAIYDAIH" regulatory complement(3778837..3778842) /regulatory_class="ribosome_binding_site" /locus_tag="STM3604" /note="putative RBS for STM3604; RegulonDB:STMS1H003593" gene 3779114..3779474 /locus_tag="STM3605" /db_xref="GeneID:1255128" regulatory 3779114..3779119 /regulatory_class="ribosome_binding_site" /locus_tag="STM3605" /note="putative RBS for STM3605; RegulonDB:STMS1H003594" CDS 3779118..3779474 /locus_tag="STM3605" /codon_start=1 /transl_table=11 /product="endolysin" /protein_id="NP_462506.1" /db_xref="GI:16766891" /db_xref="GeneID:1255128" /translation="MPHISSRFSSACIAFIKQWQGLSLEKYRDRQGNWVIGYGHMLTP DETLTFITPDQAEAFLLDDLNSCDILLQNCLPELNDRFQRETLIALMFSIGHQRFLSL INTGDISQPEISGLRI" gene complement(3779480..3780098) /gene="yhjB" /locus_tag="STM3606" /db_xref="GeneID:1255129" CDS complement(3779480..3780082) /gene="yhjB" /locus_tag="STM3606" /note="LuxR/UhpA family; similar to E. coli putative regulator (AAC76545.1); Blastp hit to AAC76545.1 (200 aa), 72% identity in aa 1 - 200" /codon_start=1 /transl_table=11 /product="helix-turn-helix transcriptional regulator" /protein_id="NP_462507.1" /db_xref="GI:16766892" /db_xref="GeneID:1255129" /translation="MQVIMFDRQSIFIHGMKISLQQHIPGISIQSVGQAEELWQKIES APDALVMLDSGLDAEFCREVLQRTAQQFPEVKIIITAMDGSQKWLHEVMQFNVQAVVP RDSDAETFVLALNAVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNK QIGRALNISTGTVKAHLESLYRRLDVKNRTQAAMMLNESN" regulatory complement(3780093..3780098) /regulatory_class="ribosome_binding_site" /gene="yhjB" /locus_tag="STM3606" /note="putative RBS for yhjB; RegulonDB:STMS1H003595" gene 3780707..3781612 /gene="yhjC" /locus_tag="STM3607" /db_xref="GeneID:1255130" regulatory 3780707..3780712 /regulatory_class="ribosome_binding_site" /gene="yhjC" /locus_tag="STM3607" /note="putative RBS for yhjC; RegulonDB:STMS1H003596" CDS 3780713..3781612 /gene="yhjC" /locus_tag="STM3607" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC76546.1); Blastp hit to AAC76546.1 (323 aa), 66% identity in aa 25 - 320" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_462508.1" /db_xref="GI:16766893" /db_xref="GeneID:1255130" /translation="MDKIYAMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQL GIRLLHRTTRRVQLTQDGMVYYERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCL ANSLIMPRLPTFLHQYPGIALELCSSDRQVDLLREDFDCVVRTEPLHAPGILTRPLGK LRRVNCASPQYLARFGYPENLDDLASHAMVHYSLTPGVSSPGFAFETPHGMQWVKTGG MLTVNSTETWHTACLAGLGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYPHR RNLSRRVHLFMVWLTETIKEAAE" gene 3781669..3782713 /gene="yhjD" /locus_tag="STM3608" /db_xref="GeneID:1255131" regulatory 3781669..3781674 /regulatory_class="ribosome_binding_site" /gene="yhjD" /locus_tag="STM3608" /note="putative RBS for yhjD; RegulonDB:STMS1H003597" CDS 3781685..3782713 /gene="yhjD" /locus_tag="STM3608" /note="similar to E. coli orf, hypothetical protein (AAC76547.1); Blastp hit to AAC76547.1 (337 aa), 85% identity in aa 1 - 336" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462509.1" /db_xref="GI:16766894" /db_xref="GeneID:1255131" /translation="MTQENDVKRPIQELEHDPIQKIETQPHDAPEKNEKANQALHSVT TLMQKIQRQPMVAHLIRATERFNDRLGNQFGAAITYFSFLSMIPIMMVSFAAAGFILA SHPNLLEDIFSKILMNVSDPTLASTLKNTINTAVQQRTTVGLVGLGIALYSGVNWMGN LREAIRAQSRDVWERKPQDQEKIWLKYLRDFISLIGLLIALIITLSITSIAGSAQQMI ISALYLDSIEWLKPAWHLIGLAISIFANYLLFFWIFWRLPRHRPRKKALIRGTFIAAI GFEVIKIIMTYTLPSLVKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDP RMPGKTQR" gene 3783053..3784386 /gene="yhjE" /locus_tag="STM3609" /db_xref="GeneID:1255132" regulatory 3783053..3783058 /regulatory_class="ribosome_binding_site" /gene="yhjE" /locus_tag="STM3609" /note="putative RBS for yhjE; RegulonDB:STMS1H003598" CDS 3783064..3784386 /gene="yhjE" /locus_tag="STM3609" /note="similar to E. coli putative transport protein (AAC76548.1); Blastp hit to AAC76548.1 (440 aa), 94% identity in aa 1 - 440" /codon_start=1 /transl_table=11 /product="MFS transporter" /protein_id="NP_462510.1" /db_xref="GI:16766895" /db_xref="GeneID:1255132" /translation="MQATATTLDHEQEHVPVNSRNKVVIASLIGTAIEFFDFYIYATA AVIVFPLIFFPQGDPTAATLQSLATFAIAFVARPIGSALFGHFGDRVGRKVTLVASLL TMGISTVIIGLLPGYATIGIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRA LYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVS LHETPVFAKVAAAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTYST AAAPVGLGLPRNEILWMLMMAVIGFGVMVPIAGLLADAFGRRKSMVIITTLIILFALF AFTPLLGSGNPALVFVFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVSSI LGASVAPYIAAWLQSHYGLAAVGVYLASMAALTLIALLLTHETRHQAL" gene complement(3784426..3786499) /gene="yhjG" /locus_tag="STM3610" /db_xref="GeneID:1255133" CDS complement(3784426..3786486) /gene="yhjG" /locus_tag="STM3610" /note="similar to E. coli orf, hypothetical protein (AAC76549.1); Blastp hit to AAC76549.1 (691 aa), 93% identity in aa 6 - 691" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462511.1" /db_xref="GI:16766896" /db_xref="GeneID:1255133" /translation="MTKAGKITAAITGTFLLLIAIVILLIATFDWNRLKPTINQKVST ELNRPFAIRGDLGVVWERQKQETGWRSWVPWPHVHAEDVILGNPPDIPEVTMVHLPRV EATLAPLALLTKTVWLPWIKLVKPDARLIRLSEKTNNWTFNLAQDKNTDPNAKPSAWS FRLDNILFDQGRIAIDDKVSKADITILIDPLGKPLPFSEVTGTKGKADKSTVGDYVFG LKAQGRYNGEPLTGTGKIGGMLALRSESTPFPVQADFRSGNTRVAFSGVVNEPMKMGG VDLRLKFSGDSLGDLYDLTGVLLPDTPPFETDGRLVAKIDAEKSSVFDYRGFNGRIGD SDIHGSLTYTTGKPRPKLEGDVESRQLRLADLGPLIGVDSGKDAEQSKRSEQRKGEKN VQPADKVLPYDRFETDKWDVMDADVRFKGRRIEHGGSLPISDLSTHIILKNADLRLQP LKFGLAGGSIVSNIHLEGDKKPMQGRADIQARRLKLKELMPDVELMQKTLGELNGDAD IRGTGNSVAALLGNSNGNLKLLMNDGLISRNLMEIVGLNVGNYIVGQIFGDDEVRVNC AAANLNITNGVARPQIFAFDTENALINVTGTASFASEQLDLTIDPESKGIRIITLRSP LYVRGTFKNPQAGVKPGPLIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILT QMKQ" regulatory complement(3786494..3786499) /regulatory_class="ribosome_binding_site" /gene="yhjG" /locus_tag="STM3610" /note="putative RBS for yhjG; RegulonDB:STMS1H003599" gene complement(3786596..3787376) /gene="yhjH" /locus_tag="STM3611" /db_xref="GeneID:1255134" CDS complement(3786596..3787363) /gene="yhjH" /locus_tag="STM3611" /note="similar to E. coli orf, hypothetical protein (AAC76550.1); Blastp hit to AAC76550.1 (256 aa), 79% identity in aa 2 - 256" /codon_start=1 /transl_table=11 /product="cyclic-guanylate-specific phosphodiesterase" /protein_id="NP_462512.1" /db_xref="GI:16766897" /db_xref="GeneID:1255134" /translation="MIKQVIQQLRVPDAGIENLQERRYWLQCERAYTYQPIYQTDGRL MAVELLTVVTHPDNPSRRIAPDRYFAELAVRHRIDVVKEQLHQLEQKADFFTRHHLLA SVNVDGPTLIAMRRQPDILAAMERLPWLRFELVEHIRLPKDSSFASMCEFGPLWLDDF GTGMANFSALSEVRYDYIKVARELFVMLRQSPEGRNLFTLLLQLMNRYCRGVIVEGVE TLEEWRDVQRSPAFAAQGYFLSRPVPLISLEEVILTL" regulatory complement(3787371..3787376) /regulatory_class="ribosome_binding_site" /gene="yhjH" /locus_tag="STM3611" /note="putative RBS for yhjH; RegulonDB:STMS1H003600" gene 3787579..3788521 /gene="kdgK" /locus_tag="STM3612" /db_xref="GeneID:1255135" regulatory 3787579..3787584 /regulatory_class="ribosome_binding_site" /gene="kdgK" /locus_tag="STM3612" /note="putative RBS for kdgK; RegulonDB:STMS1H003601" CDS 3787592..3788521 /gene="kdgK" /locus_tag="STM3612" /EC_number="2.7.1.45" /note="similar to E. coli ketodeoxygluconokinase (AAC76551.1); Blastp hit to AAC76551.1 (382 aa), 92% identity in aa 74 - 381" /codon_start=1 /transl_table=11 /product="ketodeoxygluconokinase" /protein_id="NP_462513.1" /db_xref="GI:16766898" /db_xref="GeneID:1255135" /translation="MSKKIAVIGECMIELSQKGADVQRGFGGDTLNTSVYIARQVDSA ALAVHYVTALGTDSFSQQMLEAWQHENVDTSLTQRMENRLPGLYYIETDDTGERTFYY WRNEAAAKFWLESEQSAAICETLATFDYLYLSGISLAILSPTSRDKLLSLLRECRANG GKVIFDNNYRPRLWTSREETQQVYQKMLECTDIAFLTLDDEDALWGQQPVEEVIARTH AAGVQEVVVKRGADSCLVSIQGEALIDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLT GGSATDAAKRGHLTASTVIQYRGAIIPHDAMPQ" gene complement(3788575..3790073) /gene="yhjJ" /locus_tag="STM3613" /db_xref="GeneID:1255136" CDS complement(3788575..3790062) /gene="yhjJ" /locus_tag="STM3613" /note="protein YHJJ precursor. (SW:YHJJ_SALTY)" /codon_start=1 /transl_table=11 /product="putative Zn-dependent peptidase" /protein_id="NP_462514.1" /db_xref="GI:16766899" /db_xref="GeneID:1255136" /translation="MQGTKIRLLAGSLLMLASAGYVQADALQPDPAWQQGTLANGLQW QVLATPQRPSDRIEVRLQVNTGSLTESTQQSGFSHAIPRIALTQSGGLDAAQARSLWQ QGFDPKRPMPPVIVSYDSTLYNLSLPNNRNDLLKEALTYLANVSGKLTITPETVNHAL SSEDMVATWPADTKEGWWRYRLKGSALLGHDPAEPLKQPVDAAKIQAFYEKWYTPDAM TLIVVGNIDARSVAEQINKTFGTLKGKRETPAPVPTLSPLRAESVSIMTDAVRQDRLS IMWDTPWQPIRESAALLRYWQADLAREALFWHIQQELTKNNAKDIGLGFDCRVLFLRA QCAINIESPNDKLNTNLSLVANELAKVRDKGLSEEEFTALVAQKNLELQKLFATYART DTDILTGQRMRSLQNQVVDIAPEQYQKLRQNFLNSLTVDMLNQNLRQQLSQEMALILL QPQGEPEFNMKALKATWDEIMVPTTAAAVEADEAHPEVTETPAAQ" regulatory complement(3790068..3790073) /regulatory_class="ribosome_binding_site" /gene="yhjJ" /locus_tag="STM3613" /note="putative RBS for yhjJ; RegulonDB:STMS1H003602" gene complement(3790282..3791579) /gene="dctA" /locus_tag="STM3614" /db_xref="GeneID:1255137" CDS complement(3790282..3791568) /gene="dctA" /locus_tag="STM3614" /note="C4-dicarboxylate transport protein. (SW:DCTA_SALTY)" /codon_start=1 /transl_table=11 /product="C4-dicarboxylate transporter DctA" /protein_id="NP_462515.1" /db_xref="GI:16766900" /db_xref="GeneID:1255137" /translation="MKTSLFKSLYFQVLTAIAIGILLGHYYPELGAQMKPLGDAFVKL IKMIIAPVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLIIVNVVQPG AGMNVDPATLDAQAVAVYAAQAKEQGIIAFLMDVIPGSVIGAFASGNILQVLLFAVLF GFALHRLGSKGQLIFNVIESFSQVIFGIINMIMRLAPIGAFGAMAFTIGKYGVGSLVQ LGQLIICFYITCILFVVVVLGTIARVTGFSIFKFIRYIREELLIVLGTSSSESALPRM LDKMEKLGCRKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATNSHMDIFHQITLLV VLLLSSKGAAGVTGSGFIVLAATISAVGHLPVAGLALILGIDRFMSEARALTNLVGNG VATVVVAKWVKELDHQKLDDVLNNRAPDGKTHEISS" regulatory complement(3791574..3791579) /regulatory_class="ribosome_binding_site" /gene="dctA" /locus_tag="STM3614" /note="putative RBS for dctA; RegulonDB:STMS1H003603" gene complement(3791726..3793699) /gene="yhjK" /locus_tag="STM3615" /db_xref="GeneID:1255138" CDS complement(3791726..3793699) /gene="yhjK" /locus_tag="STM3615" /note="similar to E. coli orf, hypothetical protein (AAC76554.1); Blastp hit to AAC76554.1 (651 aa), 84% identity in aa 1 - 651" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase/phosphodiesterase" /protein_id="NP_462516.3" /db_xref="GI:1109557765" /db_xref="GeneID:1255138" /translation="MAMVAAVVMMFVFVFCTVLLFHLVQQNRYNTATQLESIARSVRE PLSSAILKADLPGAETILESIKPAGVVSRADVVLPNQFQALRKRFIPERPVPVMVTRL FELPVQISLPVYSLERPANPQPLAYLVLQADSYRMYKFVMSALSTLVTIYLLLSLILT VAIAWCVNRLIVHPLRKIARELNDIPQQELIGHQLALPRLHQDDEIGMLVRSYNLNQQ LMQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTTALIIVTCETLRDTAGVL QETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII NERLPIQGIQLRPSCSIGIAMYYGDLTAEALYGRAVSAAFTARRKGKNQIQFFDPAQM EAAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEG LIERIESCGLMVTVGYWVLEESCRQLAAWQERGVTLPLSVNLSALQLMHPGMVSDLLE LLNRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQ HMKSLPVDILKIDKMFVDGLPDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQA GVNVAQGFLFARPVPADIFEERYLSHENPDYKS" gene complement(3793906..3797460) /gene="yhjL" /locus_tag="STM3616" /db_xref="GeneID:1255139" CDS complement(3793906..3797448) /gene="yhjL" /locus_tag="STM3616" /note="similar to E. coli putative oxidoreductase subunit (AAC76555.1); Blastp hit to AAC76555.1 (1166 aa), 80% identity in aa 20 - 1166" /codon_start=1 /transl_table=11 /product="cellulose biosynthesis protein BcsC" /protein_id="NP_462517.1" /db_xref="GI:16766902" /db_xref="GeneID:1255139" /translation="MRKFTLSLMHAFLPAGGRNALPGKRGVSRALLGLSLGMALTPLA GAATSAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNDPQVIAARFRYLLRQGDSD GAQKLLDRLAQLAPESTAYQSSRTAMLLSTPQGRQSLQEARLLATTGHTEQAIASYDK LFKGYPPEGELAVEYWTTVAKLPARRHEAINQLQKINAVSPGNNALQNALAQLLFASG RRDEGFAVLKQMAKSSTGRSAASAIWYQQIKDLPVSDASVKALQDYLTQFSEGDSVSA ARAQLSEQQKQLADPAFRARSQGIAAVNAGEGGKAIAQLQQAVSARQDDSEAVGALGQ AYSQRGDRARAVAQFEKALAMAPHSSSRDKWESLLKVNRYWLLIQQGDAALKANNLAQ AERFYQQARAVDNTDSYAVLGLGDVAMARKDNAAAERYYQQTLRMDSGNTNAVRGLAN LYRQQSPQKAAAFIASLSASQRRSIDDIERSLENDRLAQQAETLESEGKWAQAAELHR RRLALDPGSVWVTYRLSRDLWQAGQHAQADAQMRSLAQQKPNDPEQVYAYGLYLSGSD RDRAALAHLNTLPTSQWNSNIQELAGRLQSNQVLESANRLRDSGKEREAEALLRQQPP STRIALTLADWAQQRGDNAAARAAYDAVLAREPGNVDAMLGRVEIDIAQGDNAAARAQ LAALPASQITSINMQRRVALAQLQLGDITAAARTFNRITPQAKAQPPSMESAMVLRDA AAFQAQTGEPQRALETYKDAMVAAAITPVRPQDNDTFTRLTRNDEKDDWLKRGVRSDA AELYRQQDLNVTLAHDYWGSSGTGGYSDLKAHTTMLQVDAPWSDGRAFFRTDMVNMDV GRFSTDADGKYDNNWGTCTLEKCSGHRSQADTGASVAVGWQNETWRWDIGTTPMGFNV VDVVGGVSYSDDIGPLGYTLNAHRRPISSSLLAFGGQKDASSNTGTKWGGVRANGGGV SLSYDKGEANGVWASLSGDQLSGKNVEDNWRVRWMTGYYYKVINENNRRVTVGLNNMI WHYDKDLSGYSLGQGGYYSPQEYLSFAVPVMWRQRTENWSWELGGSVSWSHSRNRTMP RYPLMNLIPADYQEDARDQTNGGGSSQGFGYTARALIERRVTANWFVGTAVDIQQAKD YTPSHLLLYVRYSAAGWQGDMDLPPQPLVPYADW" gene complement(3797430..3798539) /gene="bcsC" /locus_tag="STM3617" /db_xref="GeneID:1255140" CDS complement(3797430..3798539) /gene="bcsC" /locus_tag="STM3617" /note="similar to E. coli putative endoglucanase (AAC76556.1); Blastp hit to AAC76556.1 (368 aa), 81% identity in aa 1 - 367" /codon_start=1 /transl_table=11 /product="endo-1,4-D-glucanase" /protein_id="NP_462518.1" /db_xref="GI:16766903" /db_xref="GeneID:1255140" /translation="MMTMLRGWITMLVMLTAINAQAACSWPAWEQFKKDYISQQGRVI DPGDARKITTSEGQSYAMFFALAANDRPAFAQLFNWTQNNLAQGSLREYLPAWLWGQK DPDTWSVLDSNSASDGDIWMAWSLLEAGRLWKETRYTEVGTALLKRIAREEVLNVPGL GSMLLPGKIGFAEANSWRFNPSYLPPQLAQYFSRFGAPWSTLRETNLRLLLETAPKGF SPDWVRYESKQGWQLKAEKTLISSYDAIRVYLWAGMMHDGDPQKARLLARFKPMATLT MKNGVPPEKVDVVSGNAQGTGPVGFSAALLPFLQNRDAQAVQRQRVADHFPGSDAYYN YVLTLFGQGWDQHRFRFTVKGELLPDWGQECVSSR" regulatory complement(3797455..3797460) /regulatory_class="ribosome_binding_site" /gene="bcsC" /locus_tag="STM3617" /note="putative RBS for yhjL; RegulonDB:STMS1H003604" gene complement(3798543..3800843) /gene="yhjN" /locus_tag="STM3618" /db_xref="GeneID:1255141" CDS complement(3798543..3800843) /gene="yhjN" /locus_tag="STM3618" /note="similar to E. coli orf, hypothetical protein (AAC76557.1); Blastp hit to AAC76557.1 (779 aa), 82% identity in aa 1 - 779" /codon_start=1 /transl_table=11 /product="cellulose synthase regulator BcsB" /protein_id="NP_462519.1" /db_xref="GI:16766904" /db_xref="GeneID:1255141" /translation="MKRKLSWMCAAVIGLSAFPAFMTAAAPATPPLINAEPTEPAPSP ATEAPVVAQTAPSREVKLTFAQIAPPPGSMALRGVNPNGGIEFGMRSDEVASKAVLNL EYTPSPSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQVPINPLFITDFNRVRLE FVGHYRDVCENPASSTLWLDIGRNSALDLTYNMLAVNNDLSHFPVPFFDPRDNRPVTL PIVFADMPDLAQQQAASIVASWFGSRAGWRGQRFPVLYNHLPDRNAIVFATNDRRPDF LRDHPAVNAPVIEMMSHPDNPYVKLLVVFGRDDKDLLQAAKGIAQGNILFRGSSVVVN DVKPLLARKPYDAPNWVRTDRPVTFGELKTYEEQLQSSGLEPAPINVSLNLPPDLYLL RSNGIDMDLNYRYTSPPTKDSSRLDISLNNQFLQAFSLNSTQETNRLLLRLPVLQGLL DGKTDVSIPALKLGAMNQLRFDFRYMNPMPGGSVDNCITFQPVPNHVVIGDDSTIDFS KYYHFIAMPDLRAFANAGFPFSRMADLSDTLAVMPKTPTEAQMETLLNTVGAIGGQTG FPAINLTITDDSAQIADKDADLLIISAIPGKLKDDKRIDLLVQATQSWVKTPMRQTAF PSIMPDEADRAADAQSTVTASGPMAAVVGFQSPFNDQRSVIALLADSPRGYQLLNDAV NDSGKRAAMFGSVAVIRESGVHSLRVGDIYYVGHLPWFERLWYALANHPVLLAVLAAL SVVLLAWVLWRLLRILSRRRLDPDHE" gene complement(3800854..3803491) /gene="yhjO" /locus_tag="STM3619" /db_xref="GeneID:1255142" CDS complement(3800854..3803478) /gene="yhjO" /locus_tag="STM3619" /note="probably involved in cell wall biogenesis; similar to E. coli putative cellulose synthase (AAC76558.1); Blastp hit to AAC76558.1 (888 aa), 88% identity in aa 17 - 887" /codon_start=1 /transl_table=11 /product="UDP-forming cellulose synthase catalytic subunit" /protein_id="NP_462520.1" /db_xref="GI:16766905" /db_xref="GeneID:1255142" /translation="MSALSRWLLIPPVSARLSERYQGYRRHGASPFSAALGCLWTILA WIVFPLEHPRWQRIRDGHKALYPHINAARPRPLDPARYLIQTLWLVMISSTKERHEPR WRSFARLKDVRGRYHQWMDTLPERVRQKTTHLEKEKELGHLSNGARRFILGVIVTFSL ILALICITQPFNPLSQFIFLLLLWGVALLVRRMPGRFSALMLIVLSLTVSCRYIWWRY TSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVPLPKEMSQWPTVD IFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGRESFRHFARHVGVHYIART THEHAKAGNINNALKHAKGEFVAIFDCDHVPTRSFLQMTMGWFLKEKQLAMMQTPHHF FSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIA VETVTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHIGQRIRWARGMVQIFRLD NPLFGKGLKLAQRLCYLNAMFHFLSGIPRLIFLTAPLAFLLLHAYIIYAPALMIALFV IPHMVHASLTNSKIQGKYRHSFWSEIYETVLAWYIAPPTLVALINPHKGKFNVTAKGG LVEEKYVDWVISRPYIFLVLLNLLGVAAGVWRYYYGPENETLTVIVSLVWVFYNLVIL GGAVAVSVESKQVRRAHRVEIAMPGAIAREDGHLFSCTVHDFSDGGLGIKINGQAQVL EGQKVNLLLKRGQQEYVFPTQVVRVTGNEVGLQLMPLTTKQHIDFVQCTFARADTWAL WQDSFPEDKPLESLLDILKLGFRGYRHLAEFAPPSVKVIFRSLTALIAWIVSFIPRRP ERQAAIQPSDRVMAQAQQ" gene complement(3803475..3804240) /gene="yhjQ" /locus_tag="STM3620" /db_xref="GeneID:1255143" CDS complement(3803475..3804227) /gene="yhjQ" /locus_tag="STM3620" /note="similar to E. coli orf, hypothetical protein (AAC76559.1); Blastp hit to AAC76559.1 (242 aa), 77% identity in aa 1 - 240" /codon_start=1 /transl_table=11 /product="cellulose synthase operon protein YhjQ" /protein_id="NP_462521.1" /db_xref="GI:16766906" /db_xref="GeneID:1255143" /translation="MAILGLQGVRGGVGTTSLTAALAWALQILGENVLVIDASPDNLL RMSFNVDFVHQGGWARSLLDGQDWRDAGLRYTSQLDLLPFGQLTAQERENPQSWQETL GEIGSAIQALKASGRYSWILLDLPYGASPLTRQLVSLCDHTLAIARVDANCHIRLHQQ ALPAGAHILINDLRIGSQLQDDLYQVWLQSQRRLLPIVIHRDEAMAECMASKQPLGEY RSDSLAAEEVLTLANWCLLHDAGDKTSAGSLR" regulatory complement(3803486..3803491) /regulatory_class="ribosome_binding_site" /gene="yhjQ" /locus_tag="STM3620" /note="putative RBS for yhjO; RegulonDB:STMS1H003605" gene complement(3804228..3804445) /gene="yhjR" /locus_tag="STM3621" /db_xref="GeneID:1255144" CDS complement(3804228..3804431) /gene="yhjR" /locus_tag="STM3621" /note="similar to E. coli orf, hypothetical protein (AAC76560.1); Blastp hit to AAC76560.1 (62 aa), 76% identity in aa 1 - 60" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462522.1" /db_xref="GI:16766907" /db_xref="GeneID:1255144" /translation="MYNNEPGAQSDPTLGYTFQNDFLALSQAFSLPEIDYTDISQREQ LAAAIKRWPLLAEFAQPHSLRKP" regulatory complement(3804235..3804240) /regulatory_class="ribosome_binding_site" /gene="yhjR" /locus_tag="STM3621" /note="putative RBS for yhjQ; RegulonDB:STMS1H003606" regulatory complement(3804440..3804445) /regulatory_class="ribosome_binding_site" /gene="yhjR" /locus_tag="STM3621" /note="putative RBS for yhjR; RegulonDB:STMS1H003607" gene 3804676..3806247 /gene="yhjS" /locus_tag="STM3622" /db_xref="GeneID:1255145" CDS 3804676..3806247 /gene="yhjS" /locus_tag="STM3622" /note="similar to E. coli putative protease (AAC76561.1); Blastp hit to AAC76561.1 (523 aa), 80% identity in aa 1 - 523" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462523.1" /db_xref="GI:16766908" /db_xref="GeneID:1255145" /translation="MRDTVDPVFSLGISSLWDELRHMPTGGVWWVNADRQQDAISLVN QTIASQTENANVAVIGMEGDPGKVIKLDESHGPEKIRLFTMPASEKGLYSLPHDLLCS VNPTHYFFILICANNTWRNITSESLHKWLEKMNKWTRFHHCSLLVINPCNNSDKQSSL LMGEYRSLFGLASLRFQGDQHLFDIAFWCNEKGVSARQQLLLCQQDERWTLSHQEETA IQPRSDEKRILSHVAVLEGAPPLSEHWTLFDNNEALFNDARTAQAATIIFSLTQNNQI EPLARRIHTLRRQRGSALKIVVRENIASLRATDERLLLGCGANMIIPWNAPLSRCLTL IESVQGQQFSRYVPEDITTLLSMTQPLKLRGFQPWDTFCDAIHTMMSNTLLPADGKGV LVALRPVPGIRVEQALTLCRPNRTGDIMTIGGNRLVLFLSFCRVNDLDTALNHIFPLP TGDIFSNRMVWFEDKQISAELVQMRLLSPELWGTPLPLAKRADPVINAEHDGRIWRRI PEPLRLLDDTAERAS" gene 3806230..3806435 /gene="yhjT" /locus_tag="STM3623" /db_xref="GeneID:1255146" regulatory 3806230..3806235 /regulatory_class="ribosome_binding_site" /gene="yhjT" /locus_tag="STM3623" /note="putative RBS for yhjT; RegulonDB:STMS1H003608" CDS 3806244..3806435 /gene="yhjT" /locus_tag="STM3623" /note="similar to E. coli orf, hypothetical protein (AAC76562.1); Blastp hit to AAC76562.1 (62 aa), 80% identity in aa 1 - 62" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462524.1" /db_xref="GI:16766909" /db_xref="GeneID:1255146" /translation="MMTISDIVQIILFCALIFFPLGYLARHSLRRISDTTRLLFAKPR YVKPAGTLRRATKVKADKK" gene 3806418..3808111 /gene="yhjU" /locus_tag="STM3624" /db_xref="GeneID:1255147" regulatory 3806418..3806423 /regulatory_class="ribosome_binding_site" /gene="yhjT" /locus_tag="STM3623" /note="putative RBS for yhjU; RegulonDB:STMS1H003609" CDS 3806432..3808111 /gene="yhjU" /locus_tag="STM3624" /note="similar to E. coli orf, hypothetical protein (AAC76563.1); Blastp hit to AAC76563.1 (559 aa), 84% identity in aa 1 - 559" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462525.1" /db_xref="GI:16766910" /db_xref="GeneID:1255147" /translation="MTQHTQTPSMPSPLWQYWRGLSGWNFYFLVKFGLLWAGYLNFHP LLNLVFMAFLLMPIPKYRLHRLRHWIAIPVGFALFWHDTWLPGPQSIMSQGTQVAEFS SGYLLDLIARFINWQMIGAIFVLLVAWLFLSQWIRVTVFVVAIMVWLNVLTLTGPVFT LWPAGQPTDTVTTTGGNAAATVATAGDKPVIGDMPAQTAPPTTANLNAWLNTFYAAEE KRKTTFPAQLPPDAQPFDLLVINICSLSWSDVEAAGLMSHPLWSHFDILFKHFNSGTS YSGPAAIRLLRASCGQPSHTRLYQPANNECYLFDNLAKLGFTQHLMMDHNGEFGGFLK EVRENGGMQSELMNQSGLPTALLSFDGSPVYDDLAVLNRWLTGEEREANSRSATFFNL LPLHDGNHFPGVSKTADYKIRAQKLFDELDAFFTELEKSGRKVMVVVVPEHGGALKGD RMQISGLRDIPSPSITNVPAGVKFFGMKAPHEGAPIDINQPSSYLAISELVVRAVDGK LFTEDSVNWNKLTSNLPQTAPVSENANAVVIQYQGKPYVRLNGGDWVPYPQ" gene 3808685..3808825 /locus_tag="STM3624A" /db_xref="GeneID:1255148" CDS 3808685..3808825 /locus_tag="STM3624A" /codon_start=1 /transl_table=11 /product="cystathionine gamma-synthase" /protein_id="NP_462526.1" /db_xref="GI:16766911" /db_xref="GeneID:1255148" /translation="MTYSPVAPEEWLKAGITDELIRLSAGPEDPDDIIHDLERASRKA AF" gene 3808932..3810241 /gene="yhjV" /locus_tag="STM3625" /db_xref="GeneID:1255149" regulatory 3808932..3808937 /regulatory_class="ribosome_binding_site" /gene="yhjV" /locus_tag="STM3625" /note="putative RBS for yhjV; RegulonDB:STMS1H003610" CDS 3808943..3810241 /gene="yhjV" /locus_tag="STM3625" /note="similar to E. coli putative transporter protein (AAC76564.1); Blastp hit to AAC76564.1 (423 aa), 87% identity in aa 5 - 423" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_462527.1" /db_xref="GI:16766912" /db_xref="GeneID:1255149" /translation="MQDDTLPLNNSNATTTPLSTRLPFTKYDFGWVLLCIGMAIGAGT VLMPVQIGLKGIWVFITAFIIAYPATYIVQDIYLKTLSESETCDDYTDIISHYLGKNW GIFLGVIYFLMIIHGVFIYSLSVVFDSASYIKTFGLTEADLSQSIIYKVAIFAVLVAI ASGGEKLLFKISGPMVVVKVGIILIFGFAMIPHWNLDNISAFPAASVFFRDVLLTIPF CFFSAVFIQVLNPMNIAYRKREPDRVLATRMAIRTHRISYITLIAIILFFSFSFTFSI SHEEAVSAFEQNISALALAAQVIPGHIIHITSTILNIFAVLTAFFGIYLGFHEALKGI VLNVLSRIMDVKNVNPLLLTSGICVFIVVTLVIWVSFRVSVLVFFQLGSPLYGIVACI IPFFLIYKVAQLEKLRGLKTWLILLYGILLCLSPLLKLIE" gene complement(3810342..3811367) /gene="dppF" /locus_tag="STM3626" /db_xref="GeneID:1255150" CDS complement(3810342..3811355) /gene="dppF" /locus_tag="STM3626" /note="ABC superfamily (atp_bind); similar to E. coli putative ATP-binding component of dipeptide transport system (AAC76565.1); Blastp hit to AAC76565.1 (334 aa), 95% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="dipeptide ABC transporter ATP-binding protein" /protein_id="NP_462528.1" /db_xref="GI:16766913" /db_xref="GeneID:1255150" /translation="MSTHEATLQQPLLRAIDLKKHYPVKKGIFSPERLVKALDGVSFN LERGKTLAVVGESGCGKSTLGRLLTMIETPTGGELYYQGQDLLKHDPHAQKLRRQKIQ IVFQNPYGSLNPRKKVGQILEEPLLINTSLSKAQRREKALAMMAKVGLKTEHYDRYPH MFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQDMGLSYVFI SHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQALLSATPRLNPDDRRER IKLTGELPSPLNPPPGCAFNARCSRRFGPCTQLQPQLKEYDGQLVACFAVDQDENPQK PLS" gene complement(3811352..3812345) /gene="dppD" /locus_tag="STM3627" /db_xref="GeneID:1255151" CDS complement(3811352..3812335) /gene="dppD" /locus_tag="STM3627" /note="ABC superfamily (atp_bind); similar to E. coli putative ATP-binding component of dipeptide transport system (AAC76566.1); Blastp hit to AAC76566.1 (327 aa), 95% identity in aa 1 - 327" /codon_start=1 /transl_table=11 /product="dipeptide ABC transporter ATP-binding protein" /protein_id="NP_462529.1" /db_xref="GI:16766914" /db_xref="GeneID:1255151" /translation="MALLNVDQLSVHFGDEGTPFKAVDRISYSVKQGEVVGIVGESGS GKSVSSLAIMGLIDYPGRVMAENLLFNGQDLKRISEKERRNLVGAEVAMIFQDPMTSL NPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVA EAAHKIIVMYAGQVVETGAAQDIFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPG KYDRPTGCLLNPRCPYATDRCRAEEPALNQLDDGRQSKCHYPLDDAGRPTL" regulatory complement(3811362..3811367) /regulatory_class="ribosome_binding_site" /gene="dppD" /locus_tag="STM3627" /note="putative RBS for dppF; RegulonDB:STMS1H003611" regulatory complement(3812340..3812345) /regulatory_class="ribosome_binding_site" /gene="dppD" /locus_tag="STM3627" /note="putative RBS for dppD; RegulonDB:STMS1H003612" gene complement(3812346..3813259) /gene="dppC" /locus_tag="STM3628" /db_xref="GeneID:1255152" CDS complement(3812346..3813248) /gene="dppC" /locus_tag="STM3628" /note="ABC superfamily (membrane); similar to E. coli dipeptide transport system permease protein 2 (AAC76567.1); Blastp hit to AAC76567.1 (300 aa), 94% identity in aa 1 - 300" /codon_start=1 /transl_table=11 /product="dipeptide ABC transporter permease DppC" /protein_id="NP_462530.1" /db_xref="GI:16766915" /db_xref="GeneID:1255152" /translation="MSQVTENNVNAAPAPMTPLREFWHYFKRNKGAVVGLAYVLIVIL IAVFANFIAPYNPAEQFRDALLAPPVWQEGGSWAHILGTDDVGRDVLSRLMYGARLSL LVGCLVVVLSLVMGIILGLVAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS IGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFVNIFPNCLAP LIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAI LLTVLAFNLMGDGLRDALDPKLKQ" regulatory complement(3813254..3813259) /regulatory_class="ribosome_binding_site" /gene="dppC" /locus_tag="STM3628" /note="putative RBS for dppC; RegulonDB:STMS1H003613" gene complement(3813258..3814290) /gene="dppB" /locus_tag="STM3629" /db_xref="GeneID:1255153" CDS complement(3813258..3814277) /gene="dppB" /locus_tag="STM3629" /note="ABC superfamily (membrane); similar to E. coli dipeptide transport system permease protein 1 (AAC76568.1); Blastp hit to AAC76568.1 (339 aa), 97% identity in aa 1 - 339" /codon_start=1 /transl_table=11 /product="dipeptide ABC transporter permease DppB" /protein_id="NP_462531.1" /db_xref="GI:16766916" /db_xref="GeneID:1255153" /translation="MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGI SPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLEL GVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW NLTPVSGRVSDMVFLDDTNPLTGFMLIDTAIWGEEGNFIDALAHMILPAMVLGTIPLA VIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLA GAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPR IRHKK" regulatory complement(3814285..3814290) /regulatory_class="ribosome_binding_site" /gene="dppB" /locus_tag="STM3629" /note="putative RBS for dppB; RegulonDB:STMS1H003614" gene complement(3814434..3816223) /gene="dppA" /locus_tag="STM3630" /db_xref="GeneID:1255154" CDS complement(3814434..3816041) /gene="dppA" /locus_tag="STM3630" /note="ABC superfamily (peri_perm); similar to E. coli dipeptide transport protein (AAC76569.1); Blastp hit to AAC76569.1 (535 aa), 93% identity in aa 1 - 535" /codon_start=1 /transl_table=11 /product="ABC transporter substrate-binding protein" /protein_id="NP_462532.1" /db_xref="GI:16766917" /db_xref="GeneID:1255154" /translation="MSISLKKSGMLKLGLSLVAMTVAASVQAKTLVYCSEGSPEGFNP QLFTSGTTYDASSVPIYNRLVEFKTGTTEVIPGLAEKWDISEDGKTYTFHLRKGVKWQ SSKDFKPTRELNADDVVFSFDRQKNEQNPYHKVSGGSYEYFEGMGLPDLISEVKKVDD HTVQFVLTRPEAPFLADLAMDFASILSKEYADNMLKAGTPEKVDLNPVGTGPFQLVQY QKDSRILYKAFDGYWGTKPQIDRLVFSITPDASVRYAKLQKNECQVMPYPNPADIARM KEDKNINLMEQAGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKEAIIKAVYQGAGVAA KNLIPPTMWGYNDDIKDYGYDPEKAKALLKEAGLEKGFTIDLWAMPVQRPYNPNARRM AEMIQADWAKIGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATLFSC DAAQQGSNYSKWCYKPFEDLIQPARATDDHNKRIELYKQAQVVMHDQAPALIIAHSTV YEPVRKEVKGYVVDPLGKHHFENVSVE" regulatory complement(3816049..3816054) /regulatory_class="ribosome_binding_site" /gene="dppA" /locus_tag="STM3630" /note="putative RBS for dppA; RegulonDB:STMS1H003615" regulatory complement(3816198..3816206) /regulatory_class="minus_10_signal" /gene="dppA" /locus_tag="STM3630" /note="putative -10_signal for dppA; RegulonDB:STMLTH004607" regulatory complement(3816215..3816223) /regulatory_class="minus_35_signal" /gene="dppA" /locus_tag="STM3630" /note="putative -35_signal for dppA; RegulonDB:STMLTH004607" gene complement(3816597..3817926) /locus_tag="STM3631" /db_xref="GeneID:1255155" CDS complement(3816597..3817922) /locus_tag="STM3631" /note="similar to E. coli putative permease (AAC75926.1); Blastp hit to AAC75926.1 (505 aa), 27% identity in aa 54 - 466" /codon_start=1 /transl_table=11 /product="nucleobase:cation symporter" /protein_id="NP_462533.1" /db_xref="GI:16766918" /db_xref="GeneID:1255155" /translation="MPQPGLTTPDNDALPWQTTLLLALQHVLVVAATPITSVFLIAKA LHFTDTVTASVLSATFLMCGLGAILQSLGVKGVGARLPFIMVPGGAPIAIFVAIALQT NIQTAIGAVILTSLFYFIALPIFRRCLHHFPPFIIGIMLLMVSINLIRLYGGLIIGQP GSADFAHPTSIILSLGTILITLIFALAFSGILRQLAVMFGLLAGTLLGMALGSTDFSG VSHGPLFSFPQLLPFGWPIFDLSASLPLLIYAVISMAEATGQTIATAEIVNSTQNVQQ AIPRTIRGDAVMSLLGGIFGTSLIITSGENIGVVRTTNVKSRFVTAAAGGLLILIAIF APLVRLATCLPGSVVCGTAVIVFSIIGVIGIDMIAREPLHTPGKTYALAMGLAMGMLP ILVPGLYQNFPAGVQMVFGNGMAAGTLTAILVNSLFNWSEKRTQARVKS" regulatory complement(3817921..3817926) /regulatory_class="ribosome_binding_site" /locus_tag="STM3631" /note="putative RBS for STM3631; RegulonDB:STMS1H003616" gene complement(3817980..3819112) /locus_tag="STM3632" /db_xref="GeneID:1255156" CDS complement(3817980..3819104) /locus_tag="STM3632" /codon_start=1 /transl_table=11 /product="aryl sulfotransferase" /protein_id="NP_462534.1" /db_xref="GI:16766919" /db_xref="GeneID:1255156" /translation="MAHLTQDSTFTLGRRLAGLIYADKAKSFGGYTLFAPQTAEGRVY LVDEQGEVAHQWQLPVRAGRDAVLLPNGNLGYNGSHRTSANLYPAWDLWHGGDFYEVT PDNEIVWHYEDIYHHHDAQWLANGNLLYTAASPLPADIAARVTGGDPRRDAPDGIIQS DVVKEVNRDGEVVWEWRAWEHLNPEDFPIHDIFDRRHWPMINGLSVTRDGLVLMSLRT TSGVIAVDKESGKVIWHAGPEVVAQQHTPVEMENGSILVFDNGNLRPGVTSPHSTVLE FDPQTKAITWQYRDIFPPAFFSPYMGSAQRLANGNTFICESAFGRLFEVTPEGETVWE YIIPFFNEYPEHLSKGIIPGKQNSAFRAHRYAADAISWLK" regulatory complement(3819107..3819112) /regulatory_class="ribosome_binding_site" /locus_tag="STM3632" /note="putative RBS for STM3632; RegulonDB:STMS1H003617" gene 3819246..3820261 /locus_tag="STM3633" /db_xref="GeneID:1255157" regulatory 3819246..3819251 /regulatory_class="ribosome_binding_site" /locus_tag="STM3633" /note="putative RBS for STM3633; RegulonDB:STMS1H003618" CDS 3819254..3820261 /locus_tag="STM3633" /note="lacI family; similar to E. coli regulator for rbs operon (AAC76776.1); Blastp hit to AAC76776.1 (330 aa), 27% identity in aa 2 - 304" /codon_start=1 /transl_table=11 /product="LacI family transcriptional regulator" /protein_id="NP_462535.1" /db_xref="GI:16766920" /db_xref="GeneID:1255157" /translation="MAVQNKKRAKLIDVARHAGVSPGTVSNALHNTRFVEPQTRRRIE EAIAALNYTPNIRARQLRTGKTNTIALLSSVPLAIASGASRLGFMMEVALTSAMMALE KQHALILVPPGANPLDAVSFDAAILIEPAENDPQLQALAQAGIPCVTIGRTPGTDTPV PWVELHSAATAQLLLTHLETSGASKCALFVGNTRRTSVLESEAAYQRWCAGRQAPVVY SLNESEGENAGYQAAQQLLQAHPDVDGVLVLIDTFASGAVRAFQEQAVAIPERMRVVT RYDGIRARESLPPLTAVNMHLDEVARQAITLLFAVLSGEKISYSDGIMPELVVRASTC R" gene complement(3820424..3820497) /gene="proK" /locus_tag="STM3634" /db_xref="GeneID:1255158" tRNA complement(3820424..3820497) /gene="proK" /locus_tag="STM3634" /product="tRNA-Pro" /db_xref="GeneID:1255158" gene complement(3820588..3822293) /gene="yhjW" /locus_tag="STM3635" /db_xref="GeneID:1255159" CDS complement(3820588..3822279) /gene="yhjW" /locus_tag="STM3635" /note="membrane-protein YHJW. (SW:YHJW_SALTY)" /codon_start=1 /transl_table=11 /product="lipid A phosphoethanolamine transferase" /protein_id="NP_462536.1" /db_xref="GI:16766921" /db_xref="GeneID:1255159" /translation="MRYIKSMTQQKLSFLLALYIGLFMNCAVFYRRFGSYAQEFTIWK GLSAVVELGATVLVTFFLLRLLSLFGRRVWRVLATLVVLFSAGASYYMTFLNVVIGYG IIASVMTTDIDLSKEVVGLHFVLWLIAVSVLPLIFIWSNHCRYTLLRQLRTPGQRFRS AAVVVLAGVMVWAPIRLLDIQQKKVERATGIDLPSYGGVVANSYLPSNWLSALGLYAW AQVDESSDNNSLINPARKFTYVAPKDGDDTYVVFIIGETTRWDHMGIFGYERNTTPKL AQEKNLAAFRGYSCDTATKLSLRCMFVREGGADNNPQRTLKEQNVFAVLKQLGFSSDL YAMQSEMWFYSNTMADNISYREQIGAEPRNRGKTVDDMLLIDEMQNSLAQNPEGKHLI ILHTKGSHFNYTQRYPRSYAQWKPECIGVDSGCTKAQMINSYDNSVTYVDHFITSVFD QLRDKKAIVFYAADHGESINEREHLHGTPRNMAPPEQFRVPMLVWMSDKYLASPQHAQ MFAHLKQQAEIKVPRRHVELYDTIMGCLGYTSPNGGINQNNNWCHIPDVQKVAAK" regulatory complement(3822288..3822293) /regulatory_class="ribosome_binding_site" /gene="yhjW" /locus_tag="STM3635" /note="putative RBS for yhjW; RegulonDB:STMS1H003620" gene complement(3822497..3823031) /gene="lpfE" /locus_tag="STM3636" /db_xref="GeneID:1255160" CDS complement(3822497..3823024) /gene="lpfE" /locus_tag="STM3636" /note="PFE protein precursor (SW:LPFE_SALTY)" /codon_start=1 /transl_table=11 /product="long polar fimbrial protein LpfE" /protein_id="NP_462537.1" /db_xref="GI:16766922" /db_xref="GeneID:1255160" /translation="MKNLHALMPACLLLTASAMAAPSNIGSAGDIHFTITIKAATCEL ENDSIDVNMETVVLQRPVKVGKELNQKNFSIGLKDCAYATKASVTMDGSPDPTDPSLF ALDSGGATGVALKIKTSGGEQQYPSSTDSTPVEHTVWFDGTNKLNYIASYVPVKPDAT VGTANATVNFSVTYE" regulatory complement(3823026..3823031) /regulatory_class="ribosome_binding_site" /gene="lpfE" /locus_tag="STM3636" /note="putative RBS for lpfE; RegulonDB:STMS1H003621" gene complement(3823030..3824116) /gene="lpfD" /locus_tag="STM3637" /db_xref="GeneID:1255161" CDS complement(3823030..3824109) /gene="lpfD" /locus_tag="STM3637" /note="LPFD protein precursor. (SW:LPFD_SALTY)" /codon_start=1 /transl_table=11 /product="long polar fimbrial protein LpfD" /protein_id="NP_462538.1" /db_xref="GI:16766923" /db_xref="GeneID:1255161" /translation="MLKKLIMFTGLLGGSVLFSGQALAAADFGPCTPEGGTHIFSATI NKTVSDTSKNTTGATFVDFDSWNLGGTYAMSCECPDDTSLINDTLFKAVVPLAFVTNI ESRSYYQINNNIAIASDVLISGGRGEYVNTPFENVGNLTNNRSQCSQNASSKDAIWTS GGKGHLSLYILHPFVGESIIPSTKIMDLFVTKKPSVYGSIPASSVYISGSITVPQGCE LSSGSTLEIPFGEFKATDFKDRKGQVAKNATKFTKELQFKCTNISDGVKIFLRIEGMP NANDSNAIDMGNPDIGAVIEGANGKILVPNDASVNQELSVSGLVDDTHRTASTTISAY PISTTGKLPAAGDFEGIATMRIDVE" regulatory complement(3824111..3824116) /regulatory_class="ribosome_binding_site" /gene="lpfD" /locus_tag="STM3637" /note="putative RBS for lpfD; RegulonDB:STMS1H003622" gene complement(3824127..3826668) /gene="lpfC" /locus_tag="STM3638" /db_xref="GeneID:1255162" CDS complement(3824127..3826655) /gene="lpfC" /locus_tag="STM3638" /note="outer membrane usher protein LPFC precursor. (SW:LPFC_SALTY)" /codon_start=1 /transl_table=11 /product="fimbrial assembly protein" /protein_id="NP_462539.1" /db_xref="GI:16766924" /db_xref="GeneID:1255162" /translation="MTWTHLPLGNKTSRFTQSALALMIAGTLPAYAGTFNPRFLEDVP GIDQHVDLSMYESNKAEHLPGKYRVSVVVNEKKMESRTLEFKAATEAQRAKMGESLVP CLSRVQLEDMGVRIDSFPALKMAPPEACVAFDDIIPQAASHFDFADQTLIMSFPQAAM KQTARGTVPESQWDEGVNALLVDYNFSGSNASYDAHDSETSYNSDSYYLNLRSGMNLG AWRLRNYSTWTRNDGNNTWDNIGTSLSRAIVPLKSQLTLGDTSTAGDIFDSVQMRGVQ LTSDEEMLPDSQRGFAPVIRGIAKSNAEVTVEQNNYVIYRTFVQPGAFEINDLYPTSN SGDLTVTIKESDGSEQKFVQPFSSVALLQREGHLKYSLSAGEYRAGNYNSAEPKFGQL DAMYGLPYGFTVYGGAIFSDDYYSLAGGLGKNFGYIGAISIDVTQAKSKLANEENSEG QSYRFLYSKSFNSGTDFRLLGYKYSTSGYYTFQEATDVRSDADSSYSQYHKRSQIQGN VTQQLGAWGSVYFNVTQQDYWNDEGKQRSLNAGYNGRIGRVNYSVAYTWTKSPEWDES DRLLSFSMSIPLGRVWSNYHLTTDQHGRTNQQLGVSGTALEDHNLNYSVQEGYGSNGV GNSGSVNLDYQGGVGSASLGYNYNRDGQQVNYGLRGGVIAHSEGITLSQPLGESMAII SAPGARGAHVINNGGVEVDWMGNAVVPYLTPYRETEVSLRSDSLNNQVDLDTASVNVV PTRGAIVRARFDTRVGYRVLMNLTQANGKAVPFGATATLLDTTKESSSIVGEDGQLYI SGMPEKGALQVNWGKDQAQQCRVAFTLPEQQDNTGVVMANAVCR" regulatory complement(3826663..3826668) /regulatory_class="ribosome_binding_site" /gene="lpfC" /locus_tag="STM3638" /note="putative RBS for lpfC; RegulonDB:STMS1H003623" gene complement(3826678..3827389) /gene="lpfB" /locus_tag="STM3639" /db_xref="GeneID:1255163" CDS complement(3826678..3827376) /gene="lpfB" /locus_tag="STM3639" /note="chaperone protein LPFB precursor. (SW:LPFB_SALTY)" /codon_start=1 /transl_table=11 /product="long polar fimbrial chaperone LpfB" /protein_id="NP_462540.1" /db_xref="GI:16766925" /db_xref="GeneID:1255163" /translation="MNRSRLISCTALVLALIAQNSFAGGVALSSTRVIYDGSRKEASL TVNNKSTTDEFLIQSWIDDANGNKKTPFIITPPLFKLSPTKNNVLRIVNTTNTLPQDR ESVYWINVKAIPAKSEDAEAKNVLQIAVRTRLKLFYRPAGLKGNSMDGWNKLQFTSAG ANQIKVENPSAFNLTFNKFYANGRDIEKTGMVPAKGSLNIELPAGTGKVSEVKYNIIN DFGTAGDMLTQRVN" regulatory complement(3827384..3827389) /regulatory_class="ribosome_binding_site" /gene="lpfB" /locus_tag="STM3639" /note="putative RBS for lpfB; RegulonDB:STMS1H003624" gene complement(3827461..3827997) /gene="lpfA" /locus_tag="STM3640" /db_xref="GeneID:1255164" CDS complement(3827461..3827997) /gene="lpfA" /locus_tag="STM3640" /note="long polar fimbria protein A precursor. (SW:LPFA_SALTY)" /codon_start=1 /transl_table=11 /product="long polar fimbria" /protein_id="NP_462541.1" /db_xref="GI:16766926" /db_xref="GeneID:1255164" /translation="MEFLMKKVVFALSALAVVSTSAFAAESGDGTIKFTGEIVDAPCV VSTDSQNQEVVLGQVKKNIFKAIGDKSSSKPFQIKLEDCDITSNTKVNVSFNGVGDTD DATLVSVNTEAGAATGVGIGIYDNANKLVEMNTGKSTTTLAAGQTVLYYTANYVATKD TVTTGYGNAEVDFNLSYE" gene complement(3828503..3829221) /gene="yhjY" /locus_tag="STM3641" /db_xref="GeneID:1255165" CDS complement(3828503..3829207) /gene="yhjY" /locus_tag="STM3641" /note="similar to E. coli putative lipase (AAC76572.1); Blastp hit to AAC76572.1 (234 aa), 72% identity in aa 3 - 234" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462542.1" /db_xref="GI:16766927" /db_xref="GeneID:1255165" /translation="MIVRKRRGRRTLRCLAGLMACSFFINTTYAWQQEYIAEAAPGHT TERYTWDSDHQPNYNDILAERIQSTQNTVGPVLSLADETPLDATSGISMGWNFPLSRR VTTGPVAALHYDGSTSSMYNEYGDSATTLAFTDPLWHASVSTLGWRVNSQFGDVRPWA QISYNQQFGENIWKAQSGLSRMTAGNQAGNWLDVTVGADVLLNPHLAAYAAFSQAENS ATDSDYLYTLGVSARF" regulatory complement(3829216..3829221) /regulatory_class="ribosome_binding_site" /gene="yhjY" /locus_tag="STM3641" /note="putative RBS for yhjY; RegulonDB:STMS1H003625" gene 3829354..3829945 /gene="tag" /locus_tag="STM3642" /db_xref="GeneID:1255166" regulatory 3829354..3829359 /regulatory_class="ribosome_binding_site" /gene="tag" /locus_tag="STM3642" /note="putative RBS for tag; RegulonDB:STMS1H003626" CDS 3829364..3829945 /gene="tag" /locus_tag="STM3642" /EC_number="3.2.2.20" /note="similar to E. coli 3-methyl-adenine DNA glycosylase I, constitutive (AAC76573.1); Blastp hit to AAC76573.1 (187 aa), 85% identity in aa 1 - 186" /codon_start=1 /transl_table=11 /product="DNA-3-methyladenine glycosylase I" /protein_id="NP_462543.1" /db_xref="GI:16766928" /db_xref="GeneID:1255166" /translation="MQRCDWVSQDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGL SWITVLKKRENYRACFHQFDPVRIAAMQEEDVEHLLQNTGIIRHRGKIQAIISNARAW LAMEQNGESFADFVWSFVDGQPQITQAASLDEIPTSTPASDALAKALKKRGFKFVGTT ICYSFMQACGLVNDHITGCFCHPGEKHDSQIPE" gene 3829910..3830363 /gene="yiaC" /locus_tag="STM3643" /db_xref="GeneID:1255167" regulatory 3829910..3829915 /regulatory_class="ribosome_binding_site" /gene="yiaC" /locus_tag="STM3643" /note="putative RBS for yiaC; RegulonDB:STMS1H003627" CDS 3829923..3830363 /gene="yiaC" /locus_tag="STM3643" /note="similar to E. coli orf, hypothetical protein (AAC76574.1); Blastp hit to AAC76574.1 (146 aa), 60% identity in aa 1 - 145" /codon_start=1 /transl_table=11 /product="N-acetyltransferase" /protein_id="NP_462544.1" /db_xref="GI:16766929" /db_xref="GeneID:1255167" /translation="MIRKSQSEDMASILALWMKSTIYAHPFIEERYWHESEAIVRDVY LPAAQTWVWEENGQLKGFVSVLEARFVGALFVAPDALRHGIGKALLEYVQQRFPLLSL EVYQKNQSAVNFYHALGFRIEDSAWQEDTAHPTWIMSWQADQTP" gene complement(3830332..3832677) /gene="bisC" /locus_tag="STM3644" /db_xref="GeneID:1255168" CDS complement(3830332..3832665) /gene="bisC" /locus_tag="STM3644" /EC_number="1.-.-.-" /note="similar to E. coli biotin sulfoxide reductase (AAC76575.1); Blastp hit to AAC76575.1 (739 aa), 86% identity in aa 2 - 739" /codon_start=1 /transl_table=11 /product="trimethylamine N-oxide reductase I catalytic subunit" /protein_id="NP_462545.1" /db_xref="GI:16766930" /db_xref="GeneID:1255168" /translation="MTHAPSRHSVLTAAHWGPVRVETDGERIFASYGELPTAHQNSLQ TVVHDQVHSKTRVRFPMVRKGFLASPDKPQGIRGQDEFVRVSWDDALDLIHAQHKRIR ESYGPSSIFAGSYGWRSNGVLHKAATLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVV GGNEVYQQQTSWPVVLEHSEVVVLWSANPLNTLKIAWNASDEQGLDYFAALRQSGKRL ICIDPMRSESVDFFGDKMEWIAPHMGTDVALMLGIAHTLVENGWQDEAFLARCTTGYD RFADYLLGTTDGTAKTAEWAAEICGVSAVKIRELAEIFHHNTTMLMAGWGMQRQQFGE QKHWMIVTLAAMLGQIGTPGGGFGFSYHFANGGNPTRRAAVLASMQGSIPGGVDAVDK IPVARIVEALENPGGFYQHNGMDRRFPDIRFIWWAGGANFTHHQDTNRLIRAWQKPEL VVISECFWTAAAKHADIVLPATTSYERNDLTMTGDYSNQHLAPMKQVVSPRWEARNDF DVFAELSERWEAGGYARFTEGKSELAWLETFYNIAAQRGASQGVTLPPFAAFWQANRL LEMPENPANAQFVRFADFRRDPDNHPLKTASGKIEIYSARIASYGYADCPGHPMWLAP DEWHGNADAGQVQLLSAHPAHRLHSQLNYSSLRERYAVAGREPVTIHPQDATTRGIVD GDTVRVWNHRGQVLAGAVVTDGIRPGVICIHEGAWPDPEPTAGGICKNGAVNVLTKDL PSSRLGNGCAGNTALVWFEKYTGPALPLTAFDPPANS" regulatory complement(3832672..3832677) /regulatory_class="ribosome_binding_site" /gene="bisC" /locus_tag="STM3644" /note="putative RBS for bisC; RegulonDB:STMS1H003628" gene 3832807..3833480 /gene="yiaD" /locus_tag="STM3645" /db_xref="GeneID:1255169" regulatory 3832807..3832812 /regulatory_class="ribosome_binding_site" /gene="yiaD" /locus_tag="STM3645" /note="putative RBS for yiaD; RegulonDB:STMS1H003629" CDS 3832818..3833480 /gene="yiaD" /locus_tag="STM3645" /note="similar to E. coli putative outer membrane protein (AAC76576.1); Blastp hit to AAC76576.1 (219 aa), 94% identity in aa 1 - 219" /codon_start=1 /transl_table=11 /product="OmpA family lipoprotein" /protein_id="NP_462546.1" /db_xref="GI:16766931" /db_xref="GeneID:1255169" /translation="MKKRVFVIAAIVSGALAVSGCTTNPYTGEREAGKSGIGAGIGSL VGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRS GDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDL NMRLSQQRADSVASSLITQGVDASRIRTSGMGPANPIASNSTAEGKAQNRRVEITLSP LQ" gene 3833687..3834673 /gene="yiaE" /locus_tag="STM3646" /db_xref="GeneID:1255170" regulatory 3833687..3833692 /regulatory_class="ribosome_binding_site" /gene="yiaE" /locus_tag="STM3646" /note="putative RBS for yiaE; RegulonDB:STMS1H003630" CDS 3833699..3834673 /gene="yiaE" /locus_tag="STM3646" /note="similar to E. coli putative dehydrogenase (AAC76577.1); Blastp hit to AAC76577.1 (328 aa), 83% identity in aa 5 - 327" /codon_start=1 /transl_table=11 /product="bifunctional glyoxylate/hydroxypyruvate reductase B" /protein_id="NP_462547.1" /db_xref="GI:16766932" /db_xref="GeneID:1255170" /translation="MKPSIILYKTLPDDLLHRLEAHFTVTQVPNLHPETVAQHAQAFA SAQGLLGASETVNRALLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTET VADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMAL AQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLF GATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLN MSNVVAVPHIGSATHETRYNMMACAVDNLIDALQGKIEKNCVNPQAAG" gene complement(3834723..3835447) /gene="yiaF" /locus_tag="STM3647" /db_xref="GeneID:1255171" CDS complement(3834723..3835433) /gene="yiaF" /locus_tag="STM3647" /note="similar to E. coli orf, hypothetical protein (AAC76578.1); Blastp hit to AAC76578.1 (276 aa), 88% identity in aa 41 - 276" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462548.1" /db_xref="GI:16766933" /db_xref="GeneID:1255171" /translation="MATGKSCSRWFAPVVALLMVFSLSGCFDKEGDQRKAFVDFLQNT AMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQ DYMTQREPLRQANGSLGVLAQQLQNAKLQADAAHGALKQADDLKPVFDQVYKKVVTVP ADALQPLIPAAQIFTQQLVQVGDYIAQQGEQVSFVANGIQFPTSQQASQYNALIGPLA SQHQAFNQAWTAAVNATQ" regulatory complement(3835442..3835447) /regulatory_class="ribosome_binding_site" /gene="yiaF" /locus_tag="STM3647" /note="putative RBS for yiaF; RegulonDB:STMS1H003631" gene 3835860..3836162 /gene="yiaG" /locus_tag="STM3648" /db_xref="GeneID:1255172" regulatory 3835860..3835865 /regulatory_class="ribosome_binding_site" /gene="yiaG" /locus_tag="STM3648" /note="putative RBS for yiaG; RegulonDB:STMS1H003632" CDS 3835872..3836162 /gene="yiaG" /locus_tag="STM3648" /note="similar to E. coli orf, hypothetical protein (AAC76579.1); Blastp hit to AAC76579.1 (96 aa), 79% identity in aa 1 - 96" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_462549.1" /db_xref="GI:16766934" /db_xref="GeneID:1255172" /translation="MEYKDPMFELLSSLEQIVFKDETRKITLTQKPNPFTEFEQLRRG TGLKTDEFARALGVTVAMVQEWESKREKPTPAELKLMRLIQANPRLSKQLME" gene 3836438..3836663 /gene="cspA" /locus_tag="STM3649" /db_xref="GeneID:1255173" regulatory 3836438..3836443 /regulatory_class="ribosome_binding_site" /gene="cspA" /locus_tag="STM3649" /note="putative RBS for cspA; RegulonDB:STMS1H003633" CDS 3836451..3836663 /gene="cspA" /locus_tag="STM3649" /note="transcriptional activator of hns; cold shock protein CSPA. (SW:CSPA_SALTY)" /codon_start=1 /transl_table=11 /product="cold-shock protein" /protein_id="NP_462550.1" /db_xref="GI:16766935" /db_xref="GeneID:1255173" /translation="MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKS LDEGQKVSFTIESGAKGPAAGNVTSL" gene 3836830..3837376 /locus_tag="STM3650" /db_xref="GeneID:1255174" regulatory 3836830..3836835 /regulatory_class="ribosome_binding_site" /locus_tag="STM3650" /note="putative RBS for STM3650; RegulonDB:STMS1H003634" CDS 3836837..3837376 /locus_tag="STM3650" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462551.1" /db_xref="GI:16766936" /db_xref="GeneID:1255174" /translation="MSKSSWLLLLGLCASGSALAASSESAFLAQHGLAGKTVEQIVDT IDQTPQSRPLPYSASITSTELKLSDGEQIYTLPLGDKFYLSFAPYEWRTHPCFNHSLS GCQGEMPNKPFTVKVTDSKGAVIVQKEMQSYRNGFIGVWLPRNMEGTLEVSYNGKTAS HAIATSDDSQTCLTELPLR" gene complement(3837748..3838240) /locus_tag="STM3651" /db_xref="GeneID:1255175" CDS complement(3837748..3838233) /locus_tag="STM3651" /codon_start=1 /transl_table=11 /product="GNAT family N-acetyltransferase" /protein_id="NP_462552.1" /db_xref="GI:16766937" /db_xref="GeneID:1255175" /translation="MGRVTAPEPLSAFHQVAEFVSGEAVLDDWLKQKGLKNQALGAAR TFVVCKKDTKQVAGFYSLATGSVNHTEATGNLRRNMPDPIPVIILARLAVDLSFHGKG LGADLLHDAVLRCYRVAENIGVRAIMVHALTEEAKNFYIHHGFKSSQTQQRTLFLRLP Q" gene complement(3838221..3838508) /locus_tag="STM3652" /db_xref="GeneID:1255176" CDS complement(3838221..3838508) /locus_tag="STM3652" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462553.1" /db_xref="GI:16766938" /db_xref="GeneID:1255176" /translation="MLYKGCLMKSDVQLNLRAKESQRALIDAAAEILHKSRTDFILET ACQAAEKVILDRRVFNFNDEQYEEFINLLDAPVADDPVIEKLLARKPQWDV" regulatory complement(3838235..3838240) /regulatory_class="ribosome_binding_site" /locus_tag="STM3652" /note="putative RBS for STM3651; RegulonDB:STMS1H003635" gene complement(3838686..3839161) /locus_tag="STM3653" /db_xref="GeneID:1255177" CDS complement(3838686..3839153) /locus_tag="STM3653" /note="similar to E. coli orf, hypothetical protein (AAC73338.1); Blastp hit to AAC73338.1 (150 aa), 33% identity in aa 4 - 145" /codon_start=1 /transl_table=11 /product="GNAT family N-acetyltransferase" /protein_id="NP_462554.1" /db_xref="GI:16766939" /db_xref="GeneID:1255177" /translation="MKIRRFSNGDEISLFRVFFSSVHTIASHYYTREQIDAWAPADID LERWANHIKELQPFVVELDGEIAGYADVQPNGYIDHFFVSGTYSRQGVGTLLMNCIHE EARQRGISELTSNVSKAAEVFFLRHGFHIVERGFPICRGVTLQNALMRKCLAK" regulatory complement(3839156..3839161) /regulatory_class="ribosome_binding_site" /locus_tag="STM3653" /note="putative RBS for STM3653; RegulonDB:STMS1H003636" gene complement(3839295..3839630) /locus_tag="STM3654" /note="pseudogene; in-frame stop following codon 23" /pseudo /db_xref="GeneID:1255178" gene complement(3839782..3841860) /gene="glyS" /locus_tag="STM3655" /db_xref="GeneID:1255179" CDS complement(3839782..3841851) /gene="glyS" /locus_tag="STM3655" /EC_number="6.1.1.14" /note="similar to E. coli glycine tRNA synthetase, beta subunit (AAC76583.1); Blastp hit to AAC76583.1 (689 aa), 92% identity in aa 1 - 689" /codon_start=1 /transl_table=11 /product="glycine--tRNA ligase subunit beta" /protein_id="NP_462555.1" /db_xref="GI:16766940" /db_xref="GeneID:1255179" /translation="MSEKTFLVEIGTEELPPKALRSLAESFAANFTAELDNAGLAHGN VEWFAAPRRLALKVANLAESQPDREVEKRGPAIAQAFDAEGKPSKAAEGWARGCGITV DQAERLKTDKGEWLLYRAHVKGESTEALVPNMVATSLAKLPIPKLMRWGASDVHFVRP VHTVTLLLGDKVIPATILGIQSDRVIRGHRFMGEPEFTIDNADQYPQILLERGKVIAD YEARKAKIKADAEEAARKIGGNADLSESLLEEVASLVEWPVVLTAKFEEKFLAVPAEA LVYTMKGDQKYFPVYDNAGKLLPNFIFVANIESKDPTQIISGNEKVVRPRLADAEFFF NTDRKKRLEDHLPRLQTVLFQQQLGTLRDKTDRIQALAGWIAGQIGADVNHATRAGLL SKCDLMTNMVFEFTDTQGVMGMHYARHDGEAEDVAVALNEQYQPRFAGDDLPSNPVAC ALAIADKMDTLAGIFGIGQHPKGDKDPFALRRAALGVLRIIVEKNLALDLQTLTEEAV RLYGDKLTNANVVDDVIDFMLGRFRAWYQDEGYTVDTIQAVLARRPTRPADFDARMKA VSHFRTLEEASALAAANKRVSNILAKATEPLNDIVHASVLKEAAEIELARHLVVLRDK LQPYFADGRYQEALIELAALRAPVDEFFENVMVNAEEKDIRINRLTLLSKLRELFLQV ADISLLQ" regulatory complement(3841855..3841860) /regulatory_class="ribosome_binding_site" /gene="glyS" /locus_tag="STM3655" /note="putative RBS for glyS; RegulonDB:STMS1H003637" gene complement(3841861..3842783) /gene="glyQ" /locus_tag="STM3656" /db_xref="GeneID:1255180" CDS complement(3841861..3842772) /gene="glyQ" /locus_tag="STM3656" /EC_number="6.1.1.14" /note="similar to E. coli glycine tRNA synthetase, alpha subunit (AAC76584.1); Blastp hit to AAC76584.1 (303 aa), 99% identity in aa 1 - 303" /codon_start=1 /transl_table=11 /product="glycine--tRNA ligase subunit alpha" /protein_id="NP_462556.1" /db_xref="GI:16766941" /db_xref="GeneID:1255180" /translation="MQKFDTRTFQGLILTLQDYWARQGCTIVQPLDMEVGAGTSHPMT CLRALGPEPMATAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLGSL KELGMDPTIHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVT GEITYGLERLAMYIQGVDSVYDLVWSDGPLGKTTYGDVFHQNEVEQSTYNFEYADVDF LFTCFEQYEKEAQQLLALENPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILRI RTLTKAVAEAYYASREALGFPMCNKDK" regulatory complement(3842778..3842783) /regulatory_class="ribosome_binding_site" /gene="glyQ" /locus_tag="STM3656" /note="putative RBS for glyQ; RegulonDB:STMS1H003638" gene complement(3842911..3843217) /locus_tag="STM3657" /db_xref="GeneID:1255181" CDS complement(3842911..3843213) /locus_tag="STM3657" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462557.1" /db_xref="GI:16766942" /db_xref="GeneID:1255181" /translation="MIMKYFCSVMIAIALVGCTATPPPTQKAQQSKVSPTRTLDMEAL CKAQAAQRYNTGAQKIAVTGFEQFQGSYEMRGNTFRKESFVCSFDADGQFLHLSMR" regulatory complement(3843212..3843217) /regulatory_class="ribosome_binding_site" /locus_tag="STM3657" /note="putative RBS for STM3657; RegulonDB:STMS1H003639" gene 3843370..3844374 /gene="yiaH" /locus_tag="STM3658" /db_xref="GeneID:1255182" regulatory 3843370..3843375 /regulatory_class="ribosome_binding_site" /gene="yiaH" /locus_tag="STM3658" /note="putative RBS for yiaH; RegulonDB:STMS1H003640" CDS 3843379..3844374 /gene="yiaH" /locus_tag="STM3658" /note="similar to E. coli orf, hypothetical protein (AAC76585.1); Blastp hit to AAC76585.1 (331 aa), 81% identity in aa 1 - 331" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="NP_462558.1" /db_xref="GI:16766943" /db_xref="GeneID:1255182" /translation="MQPKINWIDNLRGIACLMVVMIHTTTWYITNAHSVSPLNWDIAN VLNSASRVSVPLFFMISGYLFFGERCAQPRHFLRIALCLIFYSVVALAYISLFTSINV ELSLKNVLQKPVFYHLWFFFAITVIYLVSPLIQVKNVSGKMLLMLMVIIGIIANPNTV PQKIGGVEWLPINLYISGDTFYYILYGILGRAIGMMETQKSSLTLICTALFIIAVFVI SRGTLHELRWRGNFADTWYLYCGPMVFICAVSLFTVVKNKLNARTLPGLGLISRHSLG IYGFHALIIHALRTNGLELKRWPPLDIVWVFAATVTGSLLLSMLLQRIDKRKWVS" gene complement(3844397..3844762) /gene="yiaB" /locus_tag="STM3659" /db_xref="GeneID:1255183" CDS complement(3844397..3844750) /gene="yiaB" /locus_tag="STM3659" /note="similar to E. coli orf, hypothetical protein (AAC76587.1); Blastp hit to AAC76587.1 (117 aa), 33% identity in aa 15 - 109" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462559.1" /db_xref="GI:16766944" /db_xref="GeneID:1255183" /translation="MDDHVARRKRIFGLGMLVVGAVVYLVGLWPGCHTLSEKGYFFAA IVMCGFPVLIRQEHTGNGRLLSRCKSLLLLGIGMVAVGVFNLALAGALKILCLVALGV SIYGTDLYASYSDDE" regulatory complement(3844757..3844762) /regulatory_class="ribosome_binding_site" /gene="yiaB" /locus_tag="STM3659" /note="putative RBS for yiaB; RegulonDB:STMS1H003641" gene complement(3844925..3846393) /gene="xylB" /locus_tag="STM3660" /db_xref="GeneID:1255184" CDS complement(3844925..3846379) /gene="xylB" /locus_tag="STM3660" /EC_number="2.7.1.17" /note="similar to E. coli xylulokinase (AAC76588.1); Blastp hit to AAC76588.1 (484 aa), 85% identity in aa 1 - 484" /codon_start=1 /transl_table=11 /product="xylulokinase" /protein_id="NP_462560.1" /db_xref="GI:16766945" /db_xref="GeneID:1255184" /translation="MYIGIDLGTSGVKAILLNEQGDVLATHTEKLTVSRPHPLWSEQE PEQWWQATDRAVKGLGRQQSLSGVRALGIAGQMHGATLLDSRQQVLRPAILWNDGRCS EECAWLEKQVPQSRAITGNLMMPGFTAPKLVWVQRHEPDIFYQIDKVLLPKDFLRLRM TGVFASDMSDAAGTMWLDVKKRDWSDVMLNACHLTRQQMPALFEGSDITGTLLPEVAS AWGMPAVPVVAGGGDNAAGAVGVGMIDAGQAMLSLGTSGVYFAVSDGFLSKPESAVHS FCHALPERWHLMSVMLSAASCLDWAAKLTGQENVPALIAAAQQADEHADSIWFLPYLS GERTPHNNPQAKGVFFGLTHQHGPAELARAVLEGVGYALADGMDVVHACGVKPASVTL IGGGARSEYWRQMLSDISGLQLDYRTGGDVGPALGAARLAQIAVNKQTPLADVLPQLP LEQAHYPDAQRHAVYQQRRETFRRLYQQLLPLMS" regulatory complement(3846388..3846393) /regulatory_class="ribosome_binding_site" /gene="xylB" /locus_tag="STM3660" /note="putative RBS for xylB; RegulonDB:STMS1H003642" gene complement(3846479..3847813) /gene="xylA" /locus_tag="STM3661" /db_xref="GeneID:1255185" CDS complement(3846479..3847801) /gene="xylA" /locus_tag="STM3661" /EC_number="5.3.1.5" /note="similar to E. coli D-xylose isomerase (AAC76589.1); Blastp hit to AAC76589.1 (440 aa), 92% identity in aa 1 - 440" /codon_start=1 /transl_table=11 /product="xylose isomerase" /protein_id="NP_462561.1" /db_xref="GI:16766946" /db_xref="GeneID:1255185" /translation="MQAYFDQLDRVRYEGPQSTNPLAFRHYNPDELVLGKRMEDHLRF AACYWHTFCWNGADMFGVGAFNRPWQQPGEALELAKRKADVAFEFFHKLNVPFYCFHD VDVSPEGASLKEYKNNFAQMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDP EVFSWAATQVVTAMNATHKLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVE HKHKMGFQGTLLIEPKPQEPTKHQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAG HSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTG GLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNG ELGQQILKGQLSLGELAQYAEQHNLAPVHQSGHQELLENLVNRYLFDK" regulatory complement(3847808..3847813) /regulatory_class="ribosome_binding_site" /gene="xylA" /locus_tag="STM3661" /note="putative RBS for xylA; RegulonDB:STMS1H003643" protein_bind complement(3847870..3847886) /note="putative binding site for XylR, RegulonDB: STMS1H000397" /bound_moiety="XylR" protein_bind complement(3848094..3848112) /note="putative binding site for XylR, RegulonDB: STMS1H000396" /bound_moiety="XylR" gene 3848150..3849342 /gene="xylR" /locus_tag="STM3662" /db_xref="GeneID:1255186" regulatory 3848150..3848155 /regulatory_class="ribosome_binding_site" /gene="xylR" /locus_tag="STM3662" /note="putative RBS for xylR; RegulonDB:STMS1H003644" CDS 3848164..3849342 /gene="xylR" /locus_tag="STM3662" /note="AraC/XylS family; similar to E. coli putative regulator of xyl operon (AAC76593.1); Blastp hit to AAC76593.1 (392 aa), 92% identity in aa 1 - 392" /codon_start=1 /transl_table=11 /product="XylR family transcriptional regulator" /protein_id="NP_462562.1" /db_xref="GI:16766947" /db_xref="GeneID:1255186" /translation="MFDKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEED FRARIDNIKEWLGDGVIADYDDDDIAQLLADVDVPIVGVGGSYHLAENYPAVHYIATD NHALVESAFLHLKEKGVNRFAFYGLPNSSRKHWAAEREYAFRQLVAEEKYRGVVYQGL ETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHVLQACEHLHIPVPEKLCVIGI DNEELTRYLSRVALSSVAQGARQMGYQAAKLLHRLLAREEMPLQRILVPPVRVIARRS TDYRSLTDPAVIQAMHFIRNHACKGIKVEQVLDAVGISRSNLEKRFKEEVGETIHALI HAEKLEKARSLLISTTLAINEISQMCGYPSLQYFYSVFKKEYVTTPKEYRDQHSEALL " gene complement(3849403..3850238) /gene="bax" /locus_tag="STM3663" /db_xref="GeneID:1255187" CDS complement(3849403..3850227) /gene="bax" /locus_tag="STM3663" /note="similar to E. coli putative ATP-binding protein (AAC76594.1); Blastp hit to AAC76594.1 (274 aa), 89% identity in aa 1 - 274" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462563.1" /db_xref="GI:16766948" /db_xref="GeneID:1255187" /translation="MILTPMRRYGAMILMLLTIAFSGEVLAKTHATQTSQKSHITETS YKQVSSKQEYSRNSAKSSSLPDLRKYPSGTPRKKAFLRTVMPYITSQNAAITADRNWL ISKQYQNRWSPSERARMKDIAKRYKVSWSGNTRRIPWNTLLERVDIIPTSMVATMAAA ESGWGTSKLARSNNNLFGMKCTKGRCTNTPGKVKGYSQFASVEESVSAYVANLNTHPA YSSFRKSRAQLRKADQEVTATAMIHKLKGYSTQGSRYNNYLFAMYQDNQRLIAAHM" regulatory complement(3850233..3850238) /regulatory_class="ribosome_binding_site" /gene="bax" /locus_tag="STM3663" /note="putative RBS for bax; RegulonDB:STMS1H003645" protein_bind 3850260..3850280 /note="putative binding site for CRP, RegulonDB: STMS1H000046" /bound_moiety="CRP" protein_bind 3850478..3850487 /note="putative binding site for MalT, RegulonDB: STMS1H000277" /bound_moiety="MalT" gene 3850510..3852570 /gene="malS" /locus_tag="STM3664" /db_xref="GeneID:1255188" regulatory 3850510..3850518 /regulatory_class="minus_35_signal" /gene="malS" /locus_tag="STM3664" /note="putative -35_signal for malS; RegulonDB:STMLTH004608" regulatory 3850531..3850536 /regulatory_class="ribosome_binding_site" /gene="malS" /locus_tag="STM3664" /note="putative RBS for malS; RegulonDB:STMS1H003646" regulatory 3850534..3850542 /regulatory_class="minus_10_signal" /gene="malS" /locus_tag="STM3664" /note="putative -10_signal for malS; RegulonDB:STMLTH004608" CDS 3850543..3852570 /gene="malS" /locus_tag="STM3664" /EC_number="3.2.1.1" /note="similar to E. coli alpha-amylase (AAC76595.1); Blastp hit to AAC76595.1 (676 aa), 81% identity in aa 1 - 676" /codon_start=1 /transl_table=11 /product="alpha-amylase" /protein_id="NP_462564.1" /db_xref="GI:16766949" /db_xref="GeneID:1255188" /translation="MKLAAFALTLIPGIAIASSWTSPGFPTFSTQETGRFTSHAALTK GTRALTLHIDQQCWQPSGAIKLNQMLSLKPCEGAPPQWRLFKDGDYTITVDTRSGTPT LLLSIKTEPERTAQLAYQCPVWDGSPLTLDVRQTFPEGTVVRDYYSGQTDTVQNGQIT LQPADSHGLLLLERAETHAPAPFNWRNATVYFVLTDRFRNGDPTNDHSYSRHKDGMQE IGTFHGGDLRGLTSQLDYLQQLGVNALWISSPFEQIHGWVGGGTKGDFPHYAYHGYYT QDWTTLDANMGSEADLRALVDGAHQRGIRILFDVVMNHAGYATLADMQEYQFGALYLS GAERQKILGDRWTNWRPAAGQSWHSFNDYINFSDSAAWEKWWGKKWIRTDIGDYDSPG FDDLTLSLAFLPDIKTESTTPSGLPAFYANKPDTKAKFIEGYTPRDYLTHWLSQWVHD YGIDGFRVDTAKNVELPAWQQLKTQASAALREWKQANPDKALDNSPFWMTGEAWGHGV MKSDYYRYGFDAMINFDYQEQAAKAVDCLAEMGPVWQQMTDKMQDFNVLSYLSSHDTR LFREGGDKAAELLLLSPGAVQIFYGDESARPFGPTGSDPLQGTRSDMNWQDVSGKSAA AVAHWQRISQFRARHPAIGAGQQTTLTLKHGYGFVRQYGDDTVMVVWAGRR" gene 3852744..3853994 /gene="avtA" /locus_tag="STM3665" /db_xref="GeneID:1255189" CDS 3852744..3853994 /gene="avtA" /locus_tag="STM3665" /EC_number="2.6.1.66" /note="similar to E. coli alanine-alpha-ketoisovalerate (or valine-pyruvate) transaminase, transaminase C (AAC76596.1); Blastp hit to AAC76596.1 (417 aa), 92% identity in aa 1 - 415" /codon_start=1 /transl_table=11 /product="valine--pyruvate transaminase" /protein_id="NP_462565.1" /db_xref="GI:16766950" /db_xref="GeneID:1255189" /translation="MTFSLFGDKFTRHSGITRLMEDLNDGLRTPGAIMLGGGNPAHIP AMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIAL TNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELL PEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVID NAYGVPFPGIIFSEARPLWNPNIILCMSLSKLGLPGSRCGIIIANDKTITAIANMNGI ISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHK PEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYV PEPDKIEAGVKILAEEIERAWREG" gene complement(3854031..3854517) /gene="ysaA" /locus_tag="STM3666" /db_xref="GeneID:1255190" CDS complement(3854031..3854504) /gene="ysaA" /locus_tag="STM3666" /note="similar to E. coli orf, hypothetical protein (AAC76597.1); Blastp hit to AAC76597.1 (157 aa), 72% identity in aa 1 - 156" /codon_start=1 /transl_table=11 /product="electron transporter" /protein_id="NP_462566.1" /db_xref="GI:16766951" /db_xref="GeneID:1255190" /translation="MNRFIMADASACIGCRTCEVACVVSHQEQQNSAAVTTADFVPRI RVIKEDSFTTATVCHQCEDAPCANVCPVQAIRRDRGHIFVTSSRCIGCKSCMLACPFG AMTVVASASGAQAIKCDLCWHREAGPACVEACPTSALQCVDAAHVQRQRLYSQPF" regulatory complement(3854512..3854517) /regulatory_class="ribosome_binding_site" /gene="ysaA" /locus_tag="STM3666" /note="putative RBS for ysaA; RegulonDB:STMS1H003647" gene complement(3854621..3855438) /gene="yiaJ" /locus_tag="STM3667" /db_xref="GeneID:1255191" CDS complement(3854621..3855421) /gene="yiaJ" /locus_tag="STM3667" /note="similar to E. coli putative regulator (AAC76598.1); Blastp hit to AAC76598.1 (282 aa), 91% identity in aa 16 - 276" /codon_start=1 /transl_table=11 /product="IclR family transcriptional repressor" /protein_id="NP_462567.1" /db_xref="GI:16766952" /db_xref="GeneID:1255191" /translation="MSQNNDKEKPAGSQSLFRGLMLIEILSNYPNGCPLAHLSELAGL NKSTVHRLLQGLQSCGYVTPAPAAGSYRLTTKFIAVGQKALSSLNIIHVAAPHLEALN LTTGETVNFSSREDDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMGKIYMAFGQPD YVASYWESHKDQIQPLTRNTITDLPAMYDELAQIRETSMAMDREENELGVSCIAVPVF DIHHRVPYAISISLSTSRLKQIGEKNLLKPLRETAQAISNELGFTVRE" regulatory complement(3855433..3855438) /regulatory_class="ribosome_binding_site" /gene="yiaJ" /locus_tag="STM3667" /note="putative RBS for yiaJ; RegulonDB:STMS1H003648" gene 3855638..3856649 /gene="yiaK" /locus_tag="STM3668" /db_xref="GeneID:1255192" regulatory 3855638..3855643 /regulatory_class="ribosome_binding_site" /gene="yiaK" /locus_tag="STM3668" /note="putative RBS for yiaK; RegulonDB:STMS1H003649" CDS 3855651..3856649 /gene="yiaK" /locus_tag="STM3668" /EC_number="1.1.1.37" /note="similar to E. coli putative dehydrogenase (AAC76599.1); Blastp hit to AAC76599.1 (332 aa), 89% identity in aa 1 - 332" /codon_start=1 /transl_table=11 /product="3-dehydro-L-gulonate 2-dehydrogenase" /protein_id="NP_462568.1" /db_xref="GI:16766953" /db_xref="GeneID:1255192" /translation="MKVTFEELKGAFYRVLRSRNIAEDTADECAEMFARTTESGVYSH GVNRFPRFIQQLDNGDIIPDAKPQRVTSLGAIEQWDAQRAIGNLTAKKMMDRAIELAS DHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLI VAIPSTPITMVDMSMSMFSYGMLEVNRLAGRELPVDGGFDDNGQLTKEPGVIEKNRRI LPMGYWKGSGLSIVLDMIATLLSNGSSVAEVTQENSDEYGVSQIFIAIEVDKLIDGAT RDAKLQRIMDFITTAERADDNVAIRLPGHEFTKLLDDNRRHGITIDDSVWAKIQAL" gene 3856648..3857125 /gene="yiaL" /locus_tag="STM3669" /db_xref="GeneID:1255193" regulatory 3856648..3856653 /regulatory_class="ribosome_binding_site" /gene="yiaL" /locus_tag="STM3669" /note="putative RBS for yiaL; RegulonDB:STMS1H003650" CDS 3856661..3857125 /gene="yiaL" /locus_tag="STM3669" /note="similar to E. coli putative lipase (AAC76600.1); Blastp hit to AAC76600.1 (155 aa), 82% identity in aa 1 - 154" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462569.1" /db_xref="GI:16766954" /db_xref="GeneID:1255193" /translation="MIFGHIAQPDPCRLPSAIEQALDFLRNTDFRTLEPGVVEIDGKN IFAQIIDMTTRDAAENRPEVHRRYLDIQFLAWGEEKIGVAIDTGNNQISESLLEQRDI IFYHDSEHESFIEMIPGSYALFFPQDVHRPGCNKSIATPIRKIVVKVAIDVL" gene 3857142..3858081 /locus_tag="STM3670" /db_xref="GeneID:1255194" regulatory 3857142..3857147 /regulatory_class="ribosome_binding_site" /locus_tag="STM3670" /note="putative RBS for STM3670; RegulonDB:STMS1H003651" CDS 3857149..3858081 /locus_tag="STM3670" /codon_start=1 /transl_table=11 /product="DUF4862 domain-containing protein" /protein_id="NP_462570.1" /db_xref="GI:16766955" /db_xref="GeneID:1255194" /translation="MKNNTGYIIGAYPCAPSFHQKSEEEETEFWRQLSDTPDIRGLEQ PCLEHLHPLGDEWLLRHTPGNWQIVVTAIMETMRRRSENGGFGLASSDEEQRKACVEY YRHLYQKINKINGNNTGKVIALELHAAPLAGNPNVAQATDAFARSLKEIANWDWSCDL VLEHCDAMTGPAPRKGFLPLVNVLETIADYDISVCINWARSAIEGRDTSLPLIHTQQA KQAGKLGALMFSGTTLDGEYGEWQDLHAPFAPFCPQSLMTEKHVKELITAAAPELLQF TGIKLLEINASADINHRINILRDGINMMKKATRR" gene 3858209..3858693 /gene="yiaM" /locus_tag="STM3671" /db_xref="GeneID:1255195" regulatory 3858209..3858214 /regulatory_class="ribosome_binding_site" /gene="yiaM" /locus_tag="STM3671" /note="putative RBS for yiaM; RegulonDB:STMS1H003652" CDS 3858220..3858693 /gene="yiaM" /locus_tag="STM3671" /note="similar to E. coli orf, hypothetical protein (AAC76601.1); Blastp hit to AAC76601.1 (157 aa), 76% identity in aa 1 - 157" /codon_start=1 /transl_table=11 /product="2,3-diketo-L-gulonate TRAP transporter small permease YiaM" /protein_id="NP_462571.1" /db_xref="GI:16766956" /db_xref="GeneID:1255195" /translation="MKRVLEGILAVLIAVLSCIVFINVILRYGFESSILSVDELSRYL FVWLTFIGAIVAFMDNAHVQVTFVVEKLSPANQRRLSLLTHSLILLLCIALGWGSLQK ALQDWSDHSPILGLPIGLMYIACLPTSVAIALIELRRLYHLITRNDSFQQPQQGA" gene 3858683..3859973 /gene="yiaN" /locus_tag="STM3672" /db_xref="GeneID:1255196" regulatory 3858683..3858688 /regulatory_class="ribosome_binding_site" /gene="yiaM" /locus_tag="STM3671" /note="putative RBS for yiaN; RegulonDB:STMS1H003653" CDS 3858696..3859973 /gene="yiaN" /locus_tag="STM3672" /note="similar to E. coli putative membrane protein (AAC76602.1); Blastp hit to AAC76602.1 (424 aa), 90% identity in aa 1 - 398" /codon_start=1 /transl_table=11 /product="L-dehydroascorbate transporter large permease subunit" /protein_id="NP_462572.1" /db_xref="GI:16766957" /db_xref="GeneID:1255196" /translation="MAVVIFLCCLLGGIAIGLPIAWSLLLCGAALMAYLDMFDVQIMA QTLVNGADSFSLLAIPFFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVIAAM IMASLSGSAVADTAAVAALLVPMMRSANYPINRSVGLIASGGIIAPIIPPSIPFIIFG VSSGLSISKLFMAGIAPGIMMGAALMLTWWWQAGRLNLPSQPKATPREIWQSLVSGIW ALFLPVIIIGGFRSGLFTPTEAGAVAAFYALFVAVVIYRELTFSSLYHVLVNAAKTTS VVMFLVAAAQVSAWLITIAELPMMVSDLLQPLVDSPRLLFIVIMISIMVVGMVMDLTP TVLILTPVLLPLVKEANIDPIYFGVMFIINCSIGLITPPVGNVLNVISGVAKLKFDDA VRGVFPYVVVLMSLLVLFIFIPELIITPLKWIN" gene 3859973..3860971 /gene="yiaO" /locus_tag="STM3673" /db_xref="GeneID:1255197" regulatory 3859973..3859978 /regulatory_class="ribosome_binding_site" /gene="yiaO" /locus_tag="STM3673" /note="putative RBS for yiaO; RegulonDB:STMS1H003654" CDS 3859985..3860971 /gene="yiaO" /locus_tag="STM3673" /note="similar to E. coli putative solute-binding transport protein (AAC76603.1); Blastp hit to AAC76603.1 (328 aa), 87% identity in aa 1 - 328" /codon_start=1 /transl_table=11 /product="2,3-diketo-L-gulonate TRAP transporter" /protein_id="NP_462573.1" /db_xref="GI:16766958" /db_xref="GeneID:1255197" /translation="MKLHVIARSLLIAGLTVFSVSSLAAQSLRFGYETPQTDSQHIAA KKFNELLKEKTNGELTLKLFPDSTLGNAQAMISGVRGGTIDMEMSGSNNFTGLAPVFN LLDVPFLFRDTAHAHKTLDGKVGDELKKSLDSKGLKVLAYWENGWRDVTNSRAPVKTP GDLKGLKIRTNNSPMNIAAFKIFGANPIPMPFSEVYTGLETRTIDAQEHPINVVWSAK FYEVQKYLSLTHHAYSPLLLVINKAKFDALSPQFQEALLSSAKEAGDYQRKLVAEDQQ KIIDGMKEAEVEVLTDIDRKAFSDALGSQVRDMFLKDNPQGADLLKAVDEVQ" gene 3860960..3862471 /gene="lyxK" /locus_tag="STM3674" /db_xref="GeneID:1255198" regulatory 3860960..3860965 /regulatory_class="ribosome_binding_site" /gene="yiaO" /locus_tag="STM3673" /note="putative RBS for lyxK; RegulonDB:STMS1H003655" CDS 3860975..3862471 /gene="lyxK" /locus_tag="STM3674" /EC_number="2.7.1.53" /note="similar to E. coli L-xylulose kinase, cryptic (AAC76604.1); Blastp hit to AAC76604.1 (498 aa), 85% identity in aa 1 - 498" /codon_start=1 /transl_table=11 /product="carbohydrate kinase" /protein_id="NP_462574.1" /db_xref="GI:16766959" /db_xref="GeneID:1255198" /translation="MSNYWLGLDCGGSWLKAGLYDGAGREVAVQRLPLHALSPQPGWV ERDMTELWQQCASVISKLLAHTGVSGSQIRGLGISAQGKGLFLLDKSDRPLGKAILSS DRRAMEIVQRWQKEAVPQKLYPLTRQTLWTGHPVSLLRWVKENEPQRYAQIGCVMMTH DYLRWCLTGVKGCEESNISESNLYNMATGQYDPRLTEWLGISEIDSALSPVVGSAEIC GEITAQAAAITGLAAGTPVVGGLFDVVSTALCAGIEDESTLNAVMGTWAVTSGIAHGL RDHEAHPYVYGRYVNDGQYIVHEASPTSSGNLEWFTAQWGDLSFDEINQAVASLPKAG SDLFFLPFLYGSNAGLEMTCGFYGMQALHNRAHLLQALYEGVVFSHMTHLNRMRERFT EVCALRVTGGPAHSDVWMQMLADVSGLRIELPQVEETGCFGAALAARVGTGVYRDFRE AQRDLQHPVRTLLPDMTAHALYQRKYRQYQDLIEALQGYHARIKEHAL" gene 3862454..3863130 /gene="sgbH" /locus_tag="STM3675" /db_xref="GeneID:1255199" regulatory 3862454..3862459 /regulatory_class="ribosome_binding_site" /gene="sgbH" /locus_tag="STM3675" /note="putative RBS for sgbH; RegulonDB:STMS1H003656" CDS 3862468..3863130 /gene="sgbH" /locus_tag="STM3675" /EC_number="4.1.2.-" /note="similar to E. coli probable 3-hexulose 6-phosphate synthase (AAC76605.1); Blastp hit to AAC76605.1 (220 aa), 90% identity in aa 1 - 220" /codon_start=1 /transl_table=11 /product="3-keto-L-gulonate-6-phosphate decarboxylase" /protein_id="NP_462575.1" /db_xref="GI:16766960" /db_xref="GeneID:1255199" /translation="MSRPLLQLALDHTSLEAAQRDVALLQDHVDIVEAGTILCLTEGL SAVKALRAQCPEKIIVADWKVADAGETLAQQAFGAGANWMTIICAAPLATVEKGHAVA QSCGGEIQMELFGNWTLDDARDWYRTGVRQAIYHRGRDAQASGQQWGEADLARMKALS DIGLELSITGGITPADLPLFRDINVKAFIAGRALAGAAHPAQVAAEFHAQIDAIWGEK HA" gene 3863114..3863983 /gene="sgbU" /locus_tag="STM3676" /db_xref="GeneID:1255200" regulatory 3863114..3863119 /regulatory_class="ribosome_binding_site" /gene="sgbH" /locus_tag="STM3675" /note="putative RBS for sgbU; RegulonDB:STMS1H003657" CDS 3863123..3863983 /gene="sgbU" /locus_tag="STM3676" /EC_number="5.-.-.-" /note="similar to E. coli probable 3-hexulose-6-phosphate isomerase (AAC76606.1); Blastp hit to AAC76606.1 (297 aa), 91% identity in aa 12 - 297" /codon_start=1 /transl_table=11 /product="xylulose 5-phosphate 3-epimerase" /protein_id="NP_462576.1" /db_xref="GI:16766961" /db_xref="GeneID:1255200" /translation="MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDER LSRLEWTPAQRASLVNAMLESGVAIPSMCLSAHRRFPFGSRDEAVRQRAREIMTKAIR LARDLGIRTIQLAGYDVYYEEHDEGTQQRFAEGLAWAVEQAAAAQVMLAVEIMDTAFM NSISKWKKWDEMLSSPWFTVYPDVGNLSAWGNDVTAELKLGIDRIAAIHLKDTLPVTG DSPGQFRDVPFGEGCVDFVGIFKTLHELNYRGSFLIEMWTEKASEPVLEIIQARRWIE SRMQEGGFTC" gene 3863960..3864672 /gene="sgbE" /locus_tag="STM3677" /db_xref="GeneID:1255201" regulatory 3863960..3863965 /regulatory_class="ribosome_binding_site" /gene="sgbE" /locus_tag="STM3677" /note="putative RBS for sgbE; RegulonDB:STMS1H003658" CDS 3863977..3864672 /gene="sgbE" /locus_tag="STM3677" /EC_number="5.1.3.4" /note="similar to E. coli putative epimerase/aldolase (AAC76607.1); Blastp hit to AAC76607.1 (231 aa), 93% identity in aa 1 - 231" /codon_start=1 /transl_table=11 /product="L-ribulose-5-phosphate 4-epimerase" /protein_id="NP_462577.1" /db_xref="GI:16766962" /db_xref="GeneID:1255201" /translation="MLEQLKAEVLAANLALPAHGLVTFTWGNVSAVDETRKLMVIKPS GVEYEVMTADDMVVVEIASGKVVEGHKKPSSDTATHLALYRRYPQIGGIVHTHSRHAT IWSQAGLDLPAWGTTHADYFYGAIPCTRLMTVEEINGEYEYQTGEVIIKTFEERGLDP AQIPAVLVHSHGPFAWGKNAADAVHNAVVLEECAYMGLFSRQLAPQLPDMQPELLDKH YLRKHGANAYYGQ" gene complement(3864833..3865652) /locus_tag="STM3678" /db_xref="GeneID:1255202" CDS complement(3864833..3865648) /locus_tag="STM3678" /note="araC family; similar to E. coli putative ARAC-type regulatory protein (AAC76936.1); Blastp hit to AAC76936.1 (283 aa), 25% identity in aa 112 - 274" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="NP_462578.1" /db_xref="GI:16766963" /db_xref="GeneID:1255202" /translation="MLELSITLPIKVQNGGLFISRGIGRHPARRLQSWEIIFVEKGCL KIQEEECVFCVEAGESLLLWPHRRHIGVEEFPADLKFYWLHFEVKAPDSDPRWLTHLS VPQHTQVADPQALIALFRQFMNEQEKHQRSPALEFIVLLILQQLTVDARQNENAEAAG VSLAWKAQQLIRTHYHLPLSSAVLAKELHCNVDYLGRVYRRVFHLTLTEAIHRQRVRE AEKLLISDARSLKEVAERCGFNDVGYFRQIFRKHTGLTPTAWKRRYSKEHVNS" regulatory complement(3865647..3865652) /regulatory_class="ribosome_binding_site" /locus_tag="STM3678" /note="putative RBS for STM3678; RegulonDB:STMS1H003659" gene 3865905..3867867 /locus_tag="STM3679" /db_xref="GeneID:1255203" regulatory 3865905..3865910 /regulatory_class="ribosome_binding_site" /locus_tag="STM3679" /note="putative RBS for STM3679; RegulonDB:STMS1H003660" CDS 3865912..3867867 /locus_tag="STM3679" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462579.1" /db_xref="GI:16766964" /db_xref="GeneID:1255203" /translation="MNVLEVDLHKLTVSDPFLGQYQQLVRDVVIPYQWDALNDRIPEA EPSHAIENFRIAAGQQTGDFYGMVFQDSDVAKWLEAVAWSLCQKPDPALEKTADEVIE LVAAAQCDDGYLNTYFTAKAPQERWSNLAECHELYCAGHLIEAGVAFFQATGKRRLLD VVCRLADHIDSTFGPGENQLHGYPGHPEIELALMRLYEVTEQPRYMTLASYFIGQRGA QPHFYDEEYEKRGQTSYWHTYGPAWMVKDKAYSQAHLPISQQQTAIGHAVRFVYLMTG VAHLARLSNDEGKRQDCLRLWKNMAQRQLYITGGIGSQSSGEAFSSDYDLPNDSVYAE SCASIGLMMFARRMLEMEADSQYADVMERALYNTVLGGMALDGKHFFYVNPLEVHPKS LKFNHIYDHVKPIRRRWFGCACCPPNIARVLTSLGHYIYTPRADALYINMYVGNSMEI PVENGALKLRISGNYPWHEQVKIAIDSVQPVRHTLALRLPDWCPEAKVTLNGLDVEQD IRKGYLHIRRTWQEGDTITLTLPMPVRRVYGNPLARHVAGKVAIQRGPLVYCLEQADN GEELHNLWLPKESEFRVFEGKGLFAHKMLIQAEGEKQSAPDAQHQALWHYDNAPSSRQ PQTLTFIPWFSWANRGEGEMRIWVNER" gene complement(3867985..3869535) /gene="aldB" /locus_tag="STM3680" /db_xref="GeneID:1255204" CDS complement(3867985..3869523) /gene="aldB" /locus_tag="STM3680" /EC_number="1.2.1.22" /note="lactaldehyde dehydrogenase; similar to E. coli aldehyde dehydrogenase B (lactaldehyde dehydrogenase) (AAC76612.1); Blastp hit to AAC76612.1 (542 aa), 96% identity in aa 31 - 542" /codon_start=1 /transl_table=11 /product="aldehyde dehydrogenase" /protein_id="NP_462580.1" /db_xref="GI:16766965" /db_xref="GeneID:1255204" /translation="MTNNPPSTRIQPGEYGYPLKLKARYDNFIGGDWVAPADGEYYQN LTPVTGQPLCEVASSGKKDIDLALDAAHKAKDKWAHTSVQDRAAILFKIADRMEQNLE LLATAETWDNGKPIRETSAADVPLAIDHFRYFASCIRAQEGGISEVDSETVAYHFHEP LGVVGQIIPWNFPLLMASWKMAPALAAGNCVVLKPARLTPLSVLLLMEIIGDLLPPGV VNVVNGAGGEIGEYLATSKRIAKVAFTGSTEVGQQIMQYATQNIIPVTLELGGKSPNI FFADVMDEEDAFFDKALEGFALFAFNQGEVCTCPSRALVQESIYERFMERAIRRVESI RSGNPLDSGTQMGAQVSHGQLETILNYIDIGKKEGADILTGGRRKELDGELKEGYYLE PTILFGKNNMRVFQEEIFGPVLAVTTFKTMEEALEIANDTQYGLGAGVWSRNGNLAYK MGRGIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRETHKMMLEHYQQTKCLLVSYSDKP LGLF" regulatory complement(3869530..3869535) /regulatory_class="ribosome_binding_site" /gene="aldB" /locus_tag="STM3680" /note="putative RBS for aldB; RegulonDB:STMS1H003661" protein_bind complement(3869564..3869582) /note="putative binding site for FIS, RegulonDB: STMS1H000146" /bound_moiety="FIS" protein_bind complement(3869568..3869584) /note="putative binding site for FIS, RegulonDB: STMS1H000142" /bound_moiety="FIS" protein_bind complement(3869596..3869616) /note="putative binding site for CRP, RegulonDB: STMS1H000054" /bound_moiety="CRP" protein_bind complement(3869664..3869682) /note="putative binding site for FIS, RegulonDB: STMS1H000147" /bound_moiety="FIS" gene 3869686..3870573 /locus_tag="STM3681" /db_xref="GeneID:1255205" regulatory 3869686..3869691 /regulatory_class="ribosome_binding_site" /locus_tag="STM3681" /note="putative RBS for STM3681; RegulonDB:STMS1H003662" CDS 3869692..3870573 /locus_tag="STM3681" /note="similar to E. coli possible NAGC-like transcriptional regulator (AAC73497.1); Blastp hit to AAC73497.1 (348 aa), 24% identity in aa 49 - 348" /codon_start=1 /transl_table=11 /product="sugar kinase" /protein_id="NP_462581.1" /db_xref="GI:16766966" /db_xref="GeneID:1255205" /translation="MQQYIGIDVGGTHVKYGVINSDGEELTHHQFDTPEDASTFTRKW QDVVARCQQDYDIAAIGVSFPGHINPHNGHAAKAGALAYLDDVNLMELFSGLTDLPLV VENDANCAALGEMWRGAGQHYENMVCITIGTGIGGGIIVGRELYRGAHFHAGEFGVMP VGNNGESMHKIASTSGLMASCRQALALPAEEMPPADVIFERMATDVHLREAVNDWARY LSRGVYSVISMFDPGVVLIGGGISEQEKLYPLLTRHLETFEMWEALQVPIQPCQLGNQ AGRLGAVWLAQQKLDRG" protein_bind complement(3869756..3869772) /note="putative binding site for FIS, RegulonDB: STMS1H000140" /bound_moiety="FIS" protein_bind complement(3869762..3869780) /note="putative binding site for FIS, RegulonDB: STMS1H000145" /bound_moiety="FIS" gene complement(3870858..3872725) /gene="selB" /locus_tag="STM3682" /db_xref="GeneID:1255206" CDS complement(3870858..3872708) /gene="selB" /locus_tag="STM3682" /note="similar to E. coli selenocysteinyl-tRNA-specific translation factor (AAC76614.1); Blastp hit to AAC76614.1 (614 aa), 85% identity in aa 1 - 614" /codon_start=1 /transl_table=11 /product="selenocysteinyl-tRNA-specific translation elongation factor SelB" /protein_id="NP_462582.1" /db_xref="GI:16766967" /db_xref="GeneID:1255206" /translation="MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAY WPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLQILQLT GNLQLTVALTKADRVDEARIGEVREEVLAALDNYGFADTVLFVTAANEGRGIAELRAH LQQLPARSHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVNVGDTLWLTGVNTPMRV RSLHAQNQPTDHAYAGQRIALNIAGDAEKEQLNRGDWLLSDAPVGEAFSRVIVSLALH APLSQWQPLHIHHAASHVTGRVSLLEGGLAELIFDTPLWLADNDRLVLRDISARATLA GARVVTLKAPRRGKRKPDYLHWLSTLAAAQDDSAALAIHLERGAVNLPDFGWARQLNP LGMRQLIEQHGFIQAGDNLLSAPVAARWQRKILDTLATYHEQHRDEPGPGRERLRRMA LPMEDEALVLMLIERMRDDGLIHSHHGWLHLPDHKAGFSDEQQAVWQKVEPLFGDEPW WVRDLAKETGTEEQLMRLVLRQAAQQGIITAIVKDRYYRNDRIVAFANMIRELDQERG STCAADFRDRLNVGRKLAIQILEYFDRIGFTRRRGNDHLLRDALLFPQKE" gene complement(3872705..3874107) /gene="selA" /locus_tag="STM3683" /db_xref="GeneID:1255207" CDS complement(3872705..3874096) /gene="selA" /locus_tag="STM3683" /EC_number="2.9.1.1" /note="combine with SelD; similar to E. coli selenocysteine synthase: L-seryl-tRNA (Ser) selenium transferase (AAC76615.1); Blastp hit to AAC76615.1 (463 aa), 86% identity in aa 1 - 463" /codon_start=1 /transl_table=11 /product="L-seryl-tRNA(Sec) selenium transferase" /protein_id="NP_462583.1" /db_xref="GI:16766968" /db_xref="GeneID:1255207" /translation="MTSETRTLYSQLPAIDRLLHDSAFLSLRDRYGHTQVVDLLRRML DDARDVIRNTQTLPDWYADWAQEAKLRLENAAQSALRPVINLTGTVLHTNLGRALQAQ EAIEAVTQAMRAPVTLEYDLDGAGRGHRDRALATLLCRITGAEDACIVNNNAAAVLLM LAATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHAKDYRQAVNEN TGLLMKVHTSNYSIEGFTKTVEEAELAEIGRELDIPVVADLGSGSLVDLSQYGLPKEP MPQQLIAAGVSLVSFSGDKLLGGPQAGIIVGKKAMIAQLQSHPLKRALRADKMTLAAL EATLRLYLHPEALAEKLPTLRLLTRSEASIREQAQRLQARLAARYGDEFALEVKPCLS QIGSGSLPVDRLPSAAMTFTPHDGRGSRLEALAARWRMLPVPVIGRIYDGRLWLDMRC LEDESRFMEMMLK" regulatory complement(3872720..3872725) /regulatory_class="ribosome_binding_site" /gene="selA" /locus_tag="STM3683" /note="putative RBS for selB; RegulonDB:STMS1H003663" regulatory complement(3874102..3874107) /regulatory_class="ribosome_binding_site" /gene="selA" /locus_tag="STM3683" /note="putative RBS for selA; RegulonDB:STMS1H003664" gene complement(3874195..3874814) /gene="yibF" /locus_tag="STM3684" /db_xref="GeneID:1255208" CDS complement(3874195..3874803) /gene="yibF" /locus_tag="STM3684" /note="similar to E. coli putative S-transferase (AAC76616.1); Blastp hit to AAC76616.1 (202 aa), 86% identity in aa 1 - 202" /codon_start=1 /transl_table=11 /product="putative glutathione S-transferase" /protein_id="NP_462584.1" /db_xref="GI:16766969" /db_xref="GeneID:1255208" /translation="MKLIGSYTSPFVRKISVLLLEKGITFEFINELPYEADNGVAQYN PLGKVPALVTEKGEYWFDSPIIAEYIELLDIAPAMLPRDPMAALKVRQLEALADGIMD AALVSVREQARPTAQQSETELLRQREKINRSLDMLESYLSDGTLKTDTVNLATIAIAC AVGYLNFRRVAPGWCVSRPHLVKLVETLFQRESFARTEAPKA" regulatory complement(3874809..3874814) /regulatory_class="ribosome_binding_site" /gene="yibF" /locus_tag="STM3684" /note="putative RBS for yibF; RegulonDB:STMS1H003665" protein_bind 3874892..3874912 /note="putative binding site for CRP, RegulonDB: STMS1H000121" /bound_moiety="CRP" protein_bind 3874898..3874918 /note="putative binding site for CRP, RegulonDB: STMS1H000055" /bound_moiety="CRP" protein_bind 3875001..3875019 /note="putative binding site for CRP, RegulonDB: STMS1H000122" /bound_moiety="CRP" protein_bind 3875075..3875104 /note="putative binding site for CRP, RegulonDB: STMS1H000062" /bound_moiety="CRP" protein_bind 3875118..3875138 /note="putative binding site for CRP, RegulonDB: STMS1H000114" /bound_moiety="CRP" gene 3875190..3877195 /gene="mtlA" /locus_tag="STM3685" /db_xref="GeneID:1255209" regulatory 3875190..3875198 /regulatory_class="minus_35_signal" /gene="mtlA" /locus_tag="STM3685" /note="putative -35_signal for mtlA; RegulonDB:STMLTH004609" regulatory 3875217..3875225 /regulatory_class="minus_10_signal" /gene="mtlA" /locus_tag="STM3685" /note="putative -10_signal for mtlA; RegulonDB:STMLTH004609" regulatory 3875266..3875271 /regulatory_class="ribosome_binding_site" /gene="mtlA" /locus_tag="STM3685" /note="putative RBS for mtlA; RegulonDB:STMS1H003666" CDS 3875279..3877195 /gene="mtlA" /locus_tag="STM3685" /EC_number="2.7.1.191" /note="similar to E. coli PTS system, mannitol-specific enzyme IIABC components (AAC76623.1); Blastp hit to AAC76623.1 (637 aa), 95% identity in aa 1 - 637" /codon_start=1 /transl_table=11 /product="PTS mannitol transporter subunit IICBA" /protein_id="NP_462585.1" /db_xref="GI:16766970" /db_xref="GeneID:1255209" /translation="MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLP NETLAKLVGPMITYLLPLLIGYTGGRLVGGERGGVVGAITTMGVIVGADMPMFLGSMI AGPLGGYCIKKFDSWVDGKIKSGFEMLVNNFSAGIIGMILAILAFLGIGPAVEVLSKI LAAGVNFMVAHDMLPLASIFVEPAKILFLNNAINHGIFSPLGIQQSHEMGKSIFFLIE ANPGPGMGVLLAYMFFGRGSAKQSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILG GMTGVFTLTILNGGLVSPASPGSILAVLAMTPKGAYFANIAAIVAAMAVSFVVSAILL KTSKVKEEDDIEAATRRMHDMKAESKGASPLAAGDVTNDLSHVRKIIVACDAGMGSSA MGAGVLRKKVQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLT NFLDSGLYTSLTERLVAAQRHNTNEEKVRDHLKDSFEEGDNNLFKLGAENIFLGRKAA NKEEAIRFAGEQLVKGGYVEPEYVEAMLDREKLTPTYLGESIAVPHGTVEAKDRVLKT GVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTT SVDEVLELLAGKKA" gene 3877404..3878564 /gene="mtlD" /locus_tag="STM3686" /db_xref="GeneID:1255210" regulatory 3877404..3877409 /regulatory_class="ribosome_binding_site" /gene="mtlD" /locus_tag="STM3686" /note="putative RBS for mtlD; RegulonDB:STMS1H003667" CDS 3877416..3878564 /gene="mtlD" /locus_tag="STM3686" /EC_number="1.1.1.17" /note="similar to E. coli mannitol-1-phosphate dehydrogenase (AAC76624.1); Blastp hit to AAC76624.1 (382 aa), 93% identity in aa 1 - 380" /codon_start=1 /transl_table=11 /product="mannitol-1-phosphate 5-dehydrogenase" /protein_id="NP_462586.1" /db_xref="GI:16766971" /db_xref="GeneID:1255210"