SEQMERGE

Table of Contents

FUNCTION

DESCRIPTION

EXAMPLE

COMMAND-LINE SUMMARY

FUNCTION

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SeqMerge is GCG’s powerful new fragment assembly application with an X Windows graphical user interface.

DESCRIPTION

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SeqMerge allows you to intuitively assemble fragments in a sequencing project into contigs, or alignments of overlapping fragments.

From the contig, SeqMerge creates a consensus sequence representing the underlying sequence from which your fragments were derived.

For more information on SeqMerge refer to SeqMerge Tutorial.

EXAMPLE

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To run SeqMerge, type the following from the command line:

Note: You need to confirm the X display it should connect to. For example:

% setenv DISPLAY mypc.mynetwork.com:0.0

% seqmerge

Or

% setenv DISPLAY mypc.mynetwork.com:0.0

% Seqlab

 Navigate to Functions à Fragment Asssembly à SeqMerge and click Run Button to open the SeqMerge application window.

COMMAND-LINE SUMMARY

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Minimal Syntax: % seqlab

Optional Parameters:

-MODE=list   Start in the Main List mode of operation

-MODE=editor Start in the Editor mode of operation

Printed: May 27, 2005 14:27

Technical Support: support-us@accelrys.com, support-japan@accelrys.com,
or support-eu@accelrys.com

Licenses and Trademarks: Discovery Studio ®, SeqLab ®, SeqWeb ®, SeqMerge ®, GCG ® and, the GCG logo are registered trademarks of Accelrys Inc.

All other product names mentioned in this documentation may be trademarks, and if so, are trademarks or registered trademarks of their respective holders and are used in this documentation for identification purposes only.